Query psy3461
Match_columns 87
No_of_seqs 124 out of 661
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 17:18:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02873 coproporphyrinogen-II 100.0 4E-51 8.7E-56 318.1 7.9 84 3-87 190-273 (274)
2 PRK05330 coproporphyrinogen II 100.0 9.8E-50 2.1E-54 313.1 7.5 83 3-87 217-299 (300)
3 PF01218 Coprogen_oxidas: Copr 100.0 1.3E-50 2.9E-55 317.5 -3.6 84 3-87 212-295 (296)
4 COG0408 HemF Coproporphyrinoge 100.0 1E-48 2.2E-53 307.4 5.6 84 2-87 219-302 (303)
5 KOG1518|consensus 100.0 4.1E-46 8.9E-51 297.7 6.1 84 4-87 298-381 (382)
6 PF12211 LMWSLP_N: Low molecul 63.8 5.6 0.00012 31.4 2.2 24 16-39 65-88 (258)
7 TIGR03807 RR_fam_repeat putati 62.1 6.9 0.00015 21.5 1.7 11 25-35 9-19 (27)
8 TIGR03002 outer_YhbN_LptA lipo 53.2 12 0.00027 25.1 2.2 31 24-54 110-140 (142)
9 PF07353 Uroplakin_II: Uroplak 39.0 9.2 0.0002 29.3 -0.2 27 28-59 25-51 (184)
10 PF11614 FixG_C: IG-like fold 35.8 36 0.00077 22.3 2.2 25 27-52 10-34 (118)
11 PF15649 Tox-REase-7: Restrict 35.6 54 0.0012 22.0 3.1 36 5-40 48-83 (87)
12 PF04676 CwfJ_C_2: Protein sim 34.7 8.9 0.00019 25.2 -0.8 46 33-81 43-88 (98)
13 PF05965 FYRC: F/Y rich C-term 29.3 8.1 0.00017 24.5 -1.6 24 35-60 51-75 (86)
14 PF04446 Thg1: tRNAHis guanyly 28.4 8.9 0.00019 27.3 -1.7 20 29-53 75-95 (135)
15 KOG3823|consensus 27.2 34 0.00073 30.3 1.3 17 27-43 62-83 (630)
16 COG2877 KdsA 3-deoxy-D-manno-o 26.3 15 0.00034 29.7 -0.9 28 32-63 163-190 (279)
17 cd00233 VIP2 VIP2; A family of 22.8 69 0.0015 23.4 2.0 12 29-40 168-179 (201)
18 PF11040 DGF-1_C: Dispersed ge 22.4 37 0.0008 23.3 0.5 13 14-26 3-15 (87)
19 PF05962 HutD: HutD; InterPro 21.5 70 0.0015 23.3 1.9 14 25-38 100-113 (184)
20 PF01338 Bac_thur_toxin: Bacil 21.4 50 0.0011 26.0 1.1 28 24-60 148-175 (229)
21 COG3642 Mn2+-dependent serine/ 21.0 35 0.00076 26.5 0.2 7 23-29 195-201 (204)
No 1
>PLN02873 coproporphyrinogen-III oxidase
Probab=100.00 E-value=4e-51 Score=318.06 Aligned_cols=84 Identities=62% Similarity=1.103 Sum_probs=82.7
Q ss_pred cccccCCCCCCHHHHHHHHHhhcceeEeEEeeeccceecccCCCCceeeeeccCCCcccccccCCCCCCCHHHHHHHHhc
Q psy3461 3 PVKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTAKWEYMHTPEETSKEGQLIKILK 82 (87)
Q Consensus 3 ~v~rr~~~~~t~~er~wQ~~RRGRYvEFNLvyDRGT~FGL~t~g~R~EsILmSlPp~a~W~Y~~~p~~gS~Ea~l~~~l~ 82 (87)
||+||++++||++||+||++||||||||||||||||+|||+|+| |||||||||||+|+|+|+++|++||+|++|+++|+
T Consensus 190 Iv~rr~~~~~te~er~~Ql~RRGRYvEFNLvyDRGT~FGL~t~g-r~EsILmSLPp~a~W~Y~~~p~~gs~E~~l~~~l~ 268 (274)
T PLN02873 190 IVEKRKDDPFTEEQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGG-RIESILVSLPPTARWEYDHQPEEGSEEAELLDALR 268 (274)
T ss_pred HHHHhCCCCCCHHHHHHHHHhCcceEEEEeeeecCchhhccCCC-CceEEEEcCCCCCcccCCCCCCCCCHHHHHHHHhh
Confidence 59999999999999999999999999999999999999999976 99999999999999999999999999999999999
Q ss_pred CCCCC
Q psy3461 83 NPKEW 87 (87)
Q Consensus 83 ~PrdW 87 (87)
+||||
T Consensus 269 ~prdW 273 (274)
T PLN02873 269 NPREW 273 (274)
T ss_pred CCCCC
Confidence 99999
No 2
>PRK05330 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=9.8e-50 Score=313.08 Aligned_cols=83 Identities=58% Similarity=0.976 Sum_probs=81.2
Q ss_pred cccccCCCCCCHHHHHHHHHhhcceeEeEEeeeccceecccCCCCceeeeeccCCCcccccccCCCCCCCHHHHHHHHhc
Q psy3461 3 PVKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTAKWEYMHTPEETSKEGQLIKILK 82 (87)
Q Consensus 3 ~v~rr~~~~~t~~er~wQ~~RRGRYvEFNLvyDRGT~FGL~t~g~R~EsILmSlPp~a~W~Y~~~p~~gS~Ea~l~~~l~ 82 (87)
+|+||++.+||++||+||++||||||||||||||||+|||+|+ ||||||||||||+|+|+|+++|++||+|++| ++|+
T Consensus 217 Iv~rr~~~~~te~er~~Ql~rRGRYvEFNLvyDRGT~FGL~t~-gr~EsILmSLPp~a~W~Y~~~p~~gs~E~~l-~~~~ 294 (300)
T PRK05330 217 IVERRKDTPYGEREREFQLYRRGRYVEFNLVYDRGTLFGLQTG-GRTESILMSLPPLVRWEYDYQPEPGSPEARL-SDFL 294 (300)
T ss_pred HHHHhCCCCCCHHHHHHHHhhccceEEEEeeeecCcHhhccCC-CcceeEEEcCCCCCcccCCCCCCCCCHHHHH-HHhc
Confidence 5999999999999999999999999999999999999999996 5999999999999999999999999999999 9999
Q ss_pred CCCCC
Q psy3461 83 NPKEW 87 (87)
Q Consensus 83 ~PrdW 87 (87)
+||||
T Consensus 295 ~prdW 299 (300)
T PRK05330 295 KPRDW 299 (300)
T ss_pred CCCCC
Confidence 99999
No 3
>PF01218 Coprogen_oxidas: Coproporphyrinogen III oxidase; InterPro: IPR001260 Coprogen oxidase (i.e. coproporphyrin III oxidase or coproporphyrinogenase) catalyses the oxidative decarboxylation of coproporphyrinogen III to proto-porhyrinogen IX in the haem and chlorophyll biosynthetic pathways [, ]. The protein is a homodimer containing two internally bound iron atoms per molecule of native protein []. The enzyme is active in the presence of molecular oxygen that acts as an electron acceptor. The enzyme is widely distributed having been found in a variety of eukaryotic and prokaryotic sources.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 3EJO_B 3DWR_B 1VJU_B 2QT8_B 3DWS_A 2AEX_A 1TKL_B 1TK1_A 1TLB_Q 1TXN_A ....
Probab=100.00 E-value=1.3e-50 Score=317.49 Aligned_cols=84 Identities=62% Similarity=1.073 Sum_probs=67.2
Q ss_pred cccccCCCCCCHHHHHHHHHhhcceeEeEEeeeccceecccCCCCceeeeeccCCCcccccccCCCCCCCHHHHHHHHhc
Q psy3461 3 PVKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTAKWEYMHTPEETSKEGQLIKILK 82 (87)
Q Consensus 3 ~v~rr~~~~~t~~er~wQ~~RRGRYvEFNLvyDRGT~FGL~t~g~R~EsILmSlPp~a~W~Y~~~p~~gS~Ea~l~~~l~ 82 (87)
||+||++++||++||+||++||||||||||||||||+|||+|+ ||||||||||||+|+|+|+++|++||+|++|+++|+
T Consensus 212 Iv~rr~~~~~t~~er~~Ql~RRGRYvEFNLvyDRGT~FGL~t~-gr~EsILmSLPp~a~W~Y~~~p~~gs~E~~l~~~~~ 290 (296)
T PF01218_consen 212 IVERRKDEPYTEEEREWQLYRRGRYVEFNLVYDRGTKFGLQTG-GRIESILMSLPPTARWEYDYQPEPGSPEAELLEVLL 290 (296)
T ss_dssp HHHHHTTS---HHHHHHHHHHHHHHHHHHHHT-HHHHHHHHTT---HHHHGGGS-SEEE--TT----TTSHHHHHHHTHH
T ss_pred HHHHhCCCCCCHHHHHHHHHhccceEEEEEEeccCceecccCC-CchhhhhhcCchhcCccCCCCCCCcCHHHHHHHHhc
Confidence 5999999999999999999999999999999999999999998 699999999999999999999999999999999999
Q ss_pred CCCCC
Q psy3461 83 NPKEW 87 (87)
Q Consensus 83 ~PrdW 87 (87)
+||||
T Consensus 291 ~prdW 295 (296)
T PF01218_consen 291 KPRDW 295 (296)
T ss_dssp HH---
T ss_pred ccCCC
Confidence 99999
No 4
>COG0408 HemF Coproporphyrinogen III oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1e-48 Score=307.41 Aligned_cols=84 Identities=55% Similarity=0.934 Sum_probs=81.8
Q ss_pred ccccccCCCCCCHHHHHHHHHhhcceeEeEEeeeccceecccCCCCceeeeeccCCCcccccccCCCCCCCHHHHHHHHh
Q psy3461 2 IPVKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTAKWEYMHTPEETSKEGQLIKIL 81 (87)
Q Consensus 2 ~~v~rr~~~~~t~~er~wQ~~RRGRYvEFNLvyDRGT~FGL~t~g~R~EsILmSlPp~a~W~Y~~~p~~gS~Ea~l~~~l 81 (87)
.||+||++++||++||+||+|||||||||||||||||+|||+|+| |+|||||||||+|+|+|+|+|++||+||+|+ ++
T Consensus 219 pIV~~r~~~~~te~er~fQl~RRGRYVEFNLvyDRGT~FGLqTgG-r~ESILmSlPP~vrW~Y~~~P~~gs~ea~L~-~f 296 (303)
T COG0408 219 PIVERRKNMPWTEREREFQLYRRGRYVEFNLVYDRGTLFGLQTGG-RVESILMSLPPLVRWEYDYQPEPGSPEAALS-VF 296 (303)
T ss_pred HHHHHhcCCCCchhHHHHHHHhccceEEEEEEEeccceEeeccCC-chhhhhhcCCccccccCCCCCCCCCchhhhh-hh
Confidence 469999999999999999999999999999999999999999986 9999999999999999999999999999999 78
Q ss_pred cCCCCC
Q psy3461 82 KNPKEW 87 (87)
Q Consensus 82 ~~PrdW 87 (87)
+.||||
T Consensus 297 l~prdW 302 (303)
T COG0408 297 LKPRDW 302 (303)
T ss_pred cCcccc
Confidence 899999
No 5
>KOG1518|consensus
Probab=100.00 E-value=4.1e-46 Score=297.65 Aligned_cols=84 Identities=65% Similarity=1.200 Sum_probs=83.7
Q ss_pred ccccCCCCCCHHHHHHHHHhhcceeEeEEeeeccceecccCCCCceeeeeccCCCcccccccCCCCCCCHHHHHHHHhcC
Q psy3461 4 VKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTAKWEYMHTPEETSKEGQLIKILKN 83 (87)
Q Consensus 4 v~rr~~~~~t~~er~wQ~~RRGRYvEFNLvyDRGT~FGL~t~g~R~EsILmSlPp~a~W~Y~~~p~~gS~Ea~l~~~l~~ 83 (87)
|+||++++||++||+||++||||||||||+|||||+|||+|+|.||||||||||.+|+|+|+|+|.++|+|++||+|+++
T Consensus 298 v~krkdmeft~~ek~wQ~lRRGrYvEFNliYDRGT~FGL~tpgsRiESILmsLPlha~w~y~h~P~~~sre~~ll~V~~~ 377 (382)
T KOG1518|consen 298 VEKRKDMEFTEQEKQWQQLRRGRYVEFNLIYDRGTKFGLKTPGSRIESILMSLPLHASWEYMHEPKQGSREAKLLEVTHT 377 (382)
T ss_pred hhhhcCCCcChhHHHHHHHhccceEEEEEEEecCceeeccCCcchhHhHhhcccchhhhhhhcCCCCcchhhHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy3461 84 PKEW 87 (87)
Q Consensus 84 PrdW 87 (87)
||||
T Consensus 378 P~eW 381 (382)
T KOG1518|consen 378 PREW 381 (382)
T ss_pred Cccc
Confidence 9999
No 6
>PF12211 LMWSLP_N: Low molecular weight S layer protein N terminal; InterPro: IPR021071 This family of proteins is found in bacteria. Proteins in this family are typically between 328 and 381 amino acids in length. There is a conserved LGDG sequence motif. Clostridial species have a layer of surface proteins surrounding their membrane. This layer is comprised of a high molecular weight protein and a low molecular weight protein. This domain is the N-terminal domain of the low molecular weight protein. It is a structural domain. ; PDB: 3CVZ_C.
Probab=63.80 E-value=5.6 Score=31.42 Aligned_cols=24 Identities=25% Similarity=0.645 Sum_probs=15.2
Q ss_pred HHHHHHHhhcceeEeEEeeeccce
Q psy3461 16 ERQWQLLRRGRYVEFNLIYDRGTK 39 (87)
Q Consensus 16 er~wQ~~RRGRYvEFNLvyDRGT~ 39 (87)
+-+--.|--|.||+||+.|.-++.
T Consensus 65 d~kLdnLGDGdyVdF~ItY~~~~~ 88 (258)
T PF12211_consen 65 DNKLDNLGDGDYVDFEITYNAAAE 88 (258)
T ss_dssp HHHHHT--TT-EEEEEEEEEGGG-
T ss_pred HHHhccCCCCCeEEEEEEeCCCCc
Confidence 344455678999999999997543
No 7
>TIGR03807 RR_fam_repeat putative cofactor-binding repeat. This model describes a small repeat found in a family of proteins that crosses the plasma membrane by twin-arginine translation, which usually signifies the presence of a bound cofactor. This repeat shows similarity to the beta-helical repeat, in which three beta-strands per repeat wind once per repeat around in a right-handed helical stack of parallel beta structure.
Probab=62.09 E-value=6.9 Score=21.52 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=9.1
Q ss_pred cceeEeEEeee
Q psy3461 25 GRYVEFNLIYD 35 (87)
Q Consensus 25 GRYvEFNLvyD 35 (87)
|+|+|||.+-.
T Consensus 9 G~y~~~d~~vs 19 (27)
T TIGR03807 9 GIYLEFDAVVT 19 (27)
T ss_pred EEEEeeeeEEe
Confidence 89999997654
No 8
>TIGR03002 outer_YhbN_LptA lipopolysaccharide transport periplasmic protein LptA. Members of this protein family include LptA (previously called YhbN). It was shown to be an essential protein in E. coli, implicated in cell envelope integrity, and to play a role in the delivery of LPS to the outer leaflet of the outer membrane. It works with LptB (formerly yhbG), a homolog of ABC transporter ATP-binding proteins, encoded by an adjacent gene. Numerous homologs in other Proteobacteria are found in a conserved location near lipopolysaccharide inner core biosynthesis genes. This family is related to organic solvent tolerance protein (OstA), though distantly.
Probab=53.18 E-value=12 Score=25.11 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=24.4
Q ss_pred hcceeEeEEeeeccceecccCCCCceeeeec
Q psy3461 24 RGRYVEFNLIYDRGTKFGLQTPGARYESILM 54 (87)
Q Consensus 24 RGRYvEFNLvyDRGT~FGL~t~g~R~EsILm 54 (87)
.|..++||+--.+++..|=...++||.+||+
T Consensus 110 ~G~~i~~~~~~~~~~~~g~~~~~~rv~~i~~ 140 (142)
T TIGR03002 110 SGDVITYDTKKQKVIAKGDGGKTGRVTTIIQ 140 (142)
T ss_pred EecEEEEECCcCEEEEECCCCCCCeEEEEEC
Confidence 5889999999888888884433359999985
No 9
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=39.00 E-value=9.2 Score=29.31 Aligned_cols=27 Identities=44% Similarity=0.646 Sum_probs=21.1
Q ss_pred eEeEEeeeccceecccCCCCceeeeeccCCCc
Q psy3461 28 VEFNLIYDRGTKFGLQTPGARYESILMSLPLT 59 (87)
Q Consensus 28 vEFNLvyDRGT~FGL~t~g~R~EsILmSlPp~ 59 (87)
.|||+- ..-||-|+ +=+||+|++|||-
T Consensus 25 a~fnis----~lsg~lsp-al~esllvalppc 51 (184)
T PF07353_consen 25 AEFNIS----SLSGLLSP-ALAESLLVALPPC 51 (184)
T ss_pred ccccee----eccccccH-hHhhhHhhhCCCc
Confidence 488875 34678887 4799999999994
No 10
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=35.85 E-value=36 Score=22.28 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=12.0
Q ss_pred eeEeEEeeeccceecccCCCCceeee
Q psy3461 27 YVEFNLIYDRGTKFGLQTPGARYESI 52 (87)
Q Consensus 27 YvEFNLvyDRGT~FGL~t~g~R~EsI 52 (87)
-+|.|++-|||..|=..++| .|+..
T Consensus 10 ~~~~~V~rdr~~ly~~~~dg-~I~N~ 34 (118)
T PF11614_consen 10 PVELNVLRDRGPLYRELSDG-SIRNQ 34 (118)
T ss_dssp SEEEEEEE-SS----------SEEEE
T ss_pred cEEEEEEecCCCcEEEcCCC-eEEEE
Confidence 47999999999999866654 67653
No 11
>PF15649 Tox-REase-7: Restriction endonuclease fold toxin 7
Probab=35.61 E-value=54 Score=21.96 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=29.1
Q ss_pred cccCCCCCCHHHHHHHHHhhcceeEeEEeeecccee
Q psy3461 5 KKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKF 40 (87)
Q Consensus 5 ~rr~~~~~t~~er~wQ~~RRGRYvEFNLvyDRGT~F 40 (87)
+-=+..++|.+=|+...+-+-+=-+|||+-|++|+.
T Consensus 48 KNV~~~s~t~Qlr~~~~~A~~~G~~~~Lvv~~~Tkl 83 (87)
T PF15649_consen 48 KNVKYQSLTKQLRDYVKYAKENGYRFNLVVNHRTKL 83 (87)
T ss_pred echhhccchHHHHHHHHHHHHcCCcEEEEEcCCCee
Confidence 334566899999999888766667999999999985
No 12
>PF04676 CwfJ_C_2: Protein similar to CwfJ C-terminus 2; InterPro: IPR006767 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006768 from INTERPRO, which is generally N-terminal and adjacent to this domain.
Probab=34.70 E-value=8.9 Score=25.19 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=29.2
Q ss_pred eeeccceecccCCCCceeeeeccCCCcccccccCCCCCCCHHHHHHHHh
Q psy3461 33 IYDRGTKFGLQTPGARYESILMSLPLTAKWEYMHTPEETSKEGQLIKIL 81 (87)
Q Consensus 33 vyDRGT~FGL~t~g~R~EsILmSlPp~a~W~Y~~~p~~gS~Ea~l~~~l 81 (87)
+-|...+|-++-+ -+|=|=|+-||+.+.|.=+.++.+ .|.+..+.|
T Consensus 43 vie~~~~f~~qFg-ReVla~lL~lp~r~~Wr~c~~~~~--ee~~~~~~F 88 (98)
T PF04676_consen 43 VIEDEERFPLQFG-REVLAGLLNLPERADWRKCQQSKE--EETQDAEAF 88 (98)
T ss_pred ECCcCCccCcchH-HHHHHHHhCCCchHHHHhcccCHH--HHHHHHHHH
Confidence 4455556666653 257777999999999998665443 344444334
No 13
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=29.29 E-value=8.1 Score=24.50 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=17.4
Q ss_pred eccc-eecccCCCCceeeeeccCCCcc
Q psy3461 35 DRGT-KFGLQTPGARYESILMSLPLTA 60 (87)
Q Consensus 35 DRGT-~FGL~t~g~R~EsILmSlPp~a 60 (87)
-.|. -|||..+ .|-.+|.+||..-
T Consensus 51 isG~~~FGls~p--~V~~lie~Lp~a~ 75 (86)
T PF05965_consen 51 ISGPEMFGLSNP--AVQRLIESLPGAD 75 (86)
T ss_dssp --HHHHHSTTSH--HHHHHHTTSTTGG
T ss_pred CCHhHhcCCCCH--HHHHHHHhCCCcc
Confidence 3443 4999986 6999999999643
No 14
>PF04446 Thg1: tRNAHis guanylyltransferase; InterPro: IPR007537 The Thg1 protein from Saccharomyces cerevisiae (Baker's yeast) is responsible for adding a GMP residue to the 5' end of tRNA His [].; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=28.44 E-value=8.9 Score=27.26 Aligned_cols=20 Identities=25% Similarity=0.652 Sum_probs=12.1
Q ss_pred EeEEeeeccce-ecccCCCCceeeee
Q psy3461 29 EFNLIYDRGTK-FGLQTPGARYESIL 53 (87)
Q Consensus 29 EFNLvyDRGT~-FGL~t~g~R~EsIL 53 (87)
|+|+|+.+++. |+ +|++=|+
T Consensus 75 EiSfvf~~~~~~f~-----~R~~Kl~ 95 (135)
T PF04446_consen 75 EISFVFRKSTPLFN-----RRVEKLV 95 (135)
T ss_dssp EEEEEE-TT--TTT-----TBHHHHH
T ss_pred eeEEEECCCChhhc-----chhhhHH
Confidence 89999999988 64 4655433
No 15
>KOG3823|consensus
Probab=27.23 E-value=34 Score=30.32 Aligned_cols=17 Identities=47% Similarity=0.794 Sum_probs=15.4
Q ss_pred eeEeEEee-----eccceeccc
Q psy3461 27 YVEFNLIY-----DRGTKFGLQ 43 (87)
Q Consensus 27 YvEFNLvy-----DRGT~FGL~ 43 (87)
+|=|||.| |-||.||+.
T Consensus 62 fvyFtLp~~~~PnDegtifgvS 83 (630)
T KOG3823|consen 62 FVYFTLPSLYEPNDEGTIFGVS 83 (630)
T ss_pred eEEEecccccCCCCCccEEEEE
Confidence 67799999 999999997
No 16
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=26.34 E-value=15 Score=29.69 Aligned_cols=28 Identities=25% Similarity=0.577 Sum_probs=22.6
Q ss_pred EeeeccceecccCCCCceeeeeccCCCccccc
Q psy3461 32 LIYDRGTKFGLQTPGARYESILMSLPLTAKWE 63 (87)
Q Consensus 32 LvyDRGT~FGL~t~g~R~EsILmSlPp~a~W~ 63 (87)
++.+||+.||.+ +.-|=|-|||-+.+|.
T Consensus 163 ~lcERG~sFGYn----nLV~DMrsl~iM~~~~ 190 (279)
T COG2877 163 ILCERGASFGYN----NLVVDMRSLPIMKEFG 190 (279)
T ss_pred EEEeccCccCcc----hhHHHhhhhHHHHHcC
Confidence 789999999986 3557788888888874
No 17
>cd00233 VIP2 VIP2; A family of actin-ADP-ribosylating toxin. A member of the Bacillus-prodiced vegetative insecticidal proteins (VIPs) possesses high specificity against the major insect pest, corn rootworms, and belongs to a classs of binary toxins and regulators of biological pathways distinct from classical A-B toxins. A novel family of insecticidal ADP-ribosyltransferses were isolated from Bacillus cereus during vegetative growth, where VIP1 likely targets insect cells and VIP2 ribosylates actin. VIP2 shares significant sequence similarity with enzymatic components of other binary toxins, Clostridium botulinum C2 toxin, C. perfringens iota toxin, C. piroforme toxin, C. piroforme toxin and C. difficile toxin.
Probab=22.76 E-value=69 Score=23.40 Aligned_cols=12 Identities=25% Similarity=0.789 Sum_probs=7.3
Q ss_pred EeEEeeecccee
Q psy3461 29 EFNLIYDRGTKF 40 (87)
Q Consensus 29 EFNLvyDRGT~F 40 (87)
|.=++.+|||+|
T Consensus 168 E~EvLl~rgt~f 179 (201)
T cd00233 168 ELEVLLPRGSTY 179 (201)
T ss_pred ceEEEECCCCEE
Confidence 345566666666
No 18
>PF11040 DGF-1_C: Dispersed gene family protein 1 of Trypanosoma cruzi C-terminus ; InterPro: IPR021053 Dispersed gene family protein 1 of Trypanosoma cruzi is likely to be highly expressed, and is expressed from the sub-telomeric region []. However, its function is not known. This entry represents the C-terminal domain on this protein.
Probab=22.42 E-value=37 Score=23.26 Aligned_cols=13 Identities=46% Similarity=0.848 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhcc
Q psy3461 14 YHERQWQLLRRGR 26 (87)
Q Consensus 14 ~~er~wQ~~RRGR 26 (87)
.++|.||.+|--|
T Consensus 3 aEdrHWqeLREPr 15 (87)
T PF11040_consen 3 AEDRHWQELREPR 15 (87)
T ss_pred ccchhHHHHcccc
Confidence 5789999998544
No 19
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=21.48 E-value=70 Score=23.26 Aligned_cols=14 Identities=43% Similarity=0.750 Sum_probs=10.7
Q ss_pred cceeEeEEeeeccc
Q psy3461 25 GRYVEFNLIYDRGT 38 (87)
Q Consensus 25 GRYvEFNLvyDRGT 38 (87)
|.-.-|||+|+||.
T Consensus 100 G~~~dfNlM~r~~~ 113 (184)
T PF05962_consen 100 GPVRDFNLMTRRGR 113 (184)
T ss_dssp S-EEEEEEEE-TTT
T ss_pred CCEEEEEEEecCCc
Confidence 77788999999996
No 20
>PF01338 Bac_thur_toxin: Bacillus thuringiensis toxin; InterPro: IPR001615 Bacillus thuringiensis produces toxins active against insects []. The toxin kills the larvae of dipteran insects by making pores in the epithelial cell membrane of the insect midgut. The crystal protein is produced during sporulation and is accumulated both as an inclusion and as part of the spore coat.; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 2RCI_A 1PP6_D 1PP0_C 1VGF_B 1VCY_A 1CBY_A 3RON_A.
Probab=21.45 E-value=50 Score=25.96 Aligned_cols=28 Identities=25% Similarity=0.636 Sum_probs=21.8
Q ss_pred hcceeEeEEeeeccceecccCCCCceeeeeccCCCcc
Q psy3461 24 RGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTA 60 (87)
Q Consensus 24 RGRYvEFNLvyDRGT~FGL~t~g~R~EsILmSlPp~a 60 (87)
..+| ++||+ |.+|.. -+.++|.++|--.
T Consensus 148 ~TSY-~YnIl------FAIQn~--~TG~~m~alPi~~ 175 (229)
T PF01338_consen 148 QTSY-SYNIL------FAIQNE--ETGSVMYALPIGF 175 (229)
T ss_dssp EEEE-EEEEE------EEEEST--TCTTEEEEEEEEE
T ss_pred cceE-EEEEE------EEEcCC--CccceEEEEEEEE
Confidence 3678 88888 999954 5889999999543
No 21
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.03 E-value=35 Score=26.47 Aligned_cols=7 Identities=86% Similarity=1.360 Sum_probs=6.0
Q ss_pred hhcceeE
Q psy3461 23 RRGRYVE 29 (87)
Q Consensus 23 RRGRYvE 29 (87)
+||||||
T Consensus 195 ~RgRYve 201 (204)
T COG3642 195 LRGRYVE 201 (204)
T ss_pred Hhccccc
Confidence 4899998
Done!