Query psy3461
Match_columns 87
No_of_seqs 124 out of 661
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 17:19:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1txn_A Coproporphyrinogen III 100.0 1.4E-52 4.9E-57 331.2 0.5 85 3-87 242-326 (328)
2 2aex_A Coproporphyrinogen III 100.0 6.3E-52 2.2E-56 329.4 1.4 85 3-87 260-344 (346)
3 1vju_A Coproporphyrinogen III 100.0 1.3E-51 4.3E-56 324.0 -1.3 84 3-87 225-308 (309)
4 2r39_A FIXG-related protein; s 58.3 7.4 0.00025 24.9 2.7 24 28-52 11-34 (118)
5 3cvz_A S-layer protein; surfac 48.7 8.9 0.0003 29.6 2.1 23 18-40 71-93 (273)
6 2wzo_A Transforming growth fac 19.1 12 0.00041 25.2 -1.5 19 39-59 115-133 (146)
7 2hti_A BH0577 protein; structu 17.0 90 0.0031 20.6 2.5 40 6-45 6-58 (185)
8 2ibn_A Inositol oxygenase; red 16.3 44 0.0015 25.5 0.9 20 37-56 138-157 (250)
9 1yll_A PA5104, conserved hypot 15.2 73 0.0025 22.8 1.8 13 25-37 106-118 (200)
10 1wh6_A CUT-like 2, homeobox pr 14.3 63 0.0022 21.2 1.2 13 75-87 50-62 (101)
No 1
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel fold, PSI, protein structu initiative; 1.70A {Saccharomyces cerevisiae} SCOP: d.248.1.1 PDB: 1tkl_A 1tlb_A 1tk1_A
Probab=100.00 E-value=1.4e-52 Score=331.22 Aligned_cols=85 Identities=60% Similarity=1.080 Sum_probs=28.4
Q ss_pred cccccCCCCCCHHHHHHHHHhhcceeEeEEeeeccceecccCCCCceeeeeccCCCcccccccCCCCCCCHHHHHHHHhc
Q psy3461 3 PVKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTAKWEYMHTPEETSKEGQLIKILK 82 (87)
Q Consensus 3 ~v~rr~~~~~t~~er~wQ~~RRGRYvEFNLvyDRGT~FGL~t~g~R~EsILmSlPp~a~W~Y~~~p~~gS~Ea~l~~~l~ 82 (87)
||+||++++||++||+||++||||||||||||||||+|||+|+|||||||||||||+|+|+|+|+|++||+|++|+++|+
T Consensus 242 Iv~rr~~~~~te~er~~Ql~RRGRYVEFNLvyDRGT~FGL~tpggr~ESILmSLPp~a~W~Y~~~pe~gS~Ea~l~~~~~ 321 (328)
T 1txn_A 242 IVKRRKDMPYTKEEQQWQAIRRGRYVEFNLIYDRGTQFGLRTPGSRVESILMSLPEHASWLYNHHPAPGSREAKLLEVTT 321 (328)
T ss_dssp HHHTTTTSCCCHHHHHHHHHHHTHHHHHC---------------------------------------------------
T ss_pred HHHHhCCCCCCHHHHHHHHhcccceEEEEeeeecCchhhCCCCCCCceeeeecCCCCCccccCCCCCCcCHHHHHHHHhc
Confidence 59999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CCCCC
Q psy3461 83 NPKEW 87 (87)
Q Consensus 83 ~PrdW 87 (87)
+||||
T Consensus 322 ~prdW 326 (328)
T 1txn_A 322 KPREW 326 (328)
T ss_dssp -----
T ss_pred CcccC
Confidence 99999
No 2
>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet sandwiched by helices, oxidoreductase; HET: CIT; 1.58A {Homo sapiens}
Probab=100.00 E-value=6.3e-52 Score=329.36 Aligned_cols=85 Identities=65% Similarity=1.195 Sum_probs=83.7
Q ss_pred cccccCCCCCCHHHHHHHHHhhcceeEeEEeeeccceecccCCCCceeeeeccCCCcccccccCCCCCCCHHHHHHHHhc
Q psy3461 3 PVKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTAKWEYMHTPEETSKEGQLIKILK 82 (87)
Q Consensus 3 ~v~rr~~~~~t~~er~wQ~~RRGRYvEFNLvyDRGT~FGL~t~g~R~EsILmSlPp~a~W~Y~~~p~~gS~Ea~l~~~l~ 82 (87)
||+||++++||++||+||++||||||||||||||||+|||+|+|||||||||||||+|+|+|+++|++||+|++|+++|+
T Consensus 260 Iv~rr~~~~~te~er~~Ql~RRGRYVEFNLvyDRGT~FGL~Tpggr~ESILmSLPp~a~W~Y~~~pe~gS~Ea~l~~~~~ 339 (346)
T 2aex_A 260 LVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEYMHSPSENSKEAEILEVLR 339 (346)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCCCCTTGGGSSSCCHHHHHHHCCSCCCCCCCCCCCTTSHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHhhCCeeeEEEEEeecCccccccCCCCChhhhhhcCCCcCccccCCCCCCCCHHHHHHHHhc
Confidence 59999999999999999999999999999999999999999977899999999999999999999999999999999999
Q ss_pred CCCCC
Q psy3461 83 NPKEW 87 (87)
Q Consensus 83 ~PrdW 87 (87)
+||||
T Consensus 340 ~prdW 344 (346)
T 2aex_A 340 HPRDW 344 (346)
T ss_dssp SCCCC
T ss_pred Ccccc
Confidence 99999
No 3
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A*
Probab=100.00 E-value=1.3e-51 Score=323.97 Aligned_cols=84 Identities=45% Similarity=0.813 Sum_probs=82.3
Q ss_pred cccccCCCCCCHHHHHHHHHhhcceeEeEEeeeccceecccCCCCceeeeeccCCCcccccccCCCCCCCHHHHHHHHhc
Q psy3461 3 PVKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTAKWEYMHTPEETSKEGQLIKILK 82 (87)
Q Consensus 3 ~v~rr~~~~~t~~er~wQ~~RRGRYvEFNLvyDRGT~FGL~t~g~R~EsILmSlPp~a~W~Y~~~p~~gS~Ea~l~~~l~ 82 (87)
||+||++++||++||+||++||||||||||||||||+|||+|+ ||||||||||||+|+|+|+++|++||+|++|+++|+
T Consensus 225 Iv~rr~~~~~te~er~~Ql~RRGRYVEFNLvyDRGT~FGL~tg-gr~ESILmSLPp~a~W~Y~~~pe~gS~Ea~L~~~~~ 303 (309)
T 1vju_A 225 IVNRRKNTPYTEQQVEFQEFRRGRYAEFNLVIDRGTKFGLQSG-GRTESILISLPPRARWGYNWQPEPGTPEARLTEYFL 303 (309)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTT-CCHHHHGGGSCSCCCCCTTCCCCTTSHHHHHHHTHH
T ss_pred HHHHhCCCCCCHHHHHHHHhhccceEEEEeeeecCchhhccCC-CcceeeeecCCccCeeccCCCCCCCCHHHHHHHHhc
Confidence 5999999999999999999999999999999999999999995 699999999999999999999999999999999999
Q ss_pred CCCCC
Q psy3461 83 NPKEW 87 (87)
Q Consensus 83 ~PrdW 87 (87)
+||||
T Consensus 304 ~prdW 308 (309)
T 1vju_A 304 TKRQW 308 (309)
T ss_dssp HHCCC
T ss_pred CCcCC
Confidence 99999
No 4
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=58.34 E-value=7.4 Score=24.90 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=18.7
Q ss_pred eEeEEeeeccceecccCCCCceeee
Q psy3461 28 VEFNLIYDRGTKFGLQTPGARYESI 52 (87)
Q Consensus 28 vEFNLvyDRGT~FGL~t~g~R~EsI 52 (87)
+|.|.+.|||..|=..++| .||..
T Consensus 11 ~~l~V~rdR~~Ly~~~~dG-~I~N~ 34 (118)
T 2r39_A 11 AGMSVIRDRNQLFRVNSAG-EVENT 34 (118)
T ss_dssp EEEEEEECSSCCCCC--CC-SEEEE
T ss_pred cEEEEEecCCceEEEcCCC-eEEEE
Confidence 7899999999999888765 68764
No 5
>3cvz_A S-layer protein; surface layer protein, protein binding, structural protein; 2.40A {Clostridium difficile}
Probab=48.73 E-value=8.9 Score=29.59 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=17.9
Q ss_pred HHHHHhhcceeEeEEeeecccee
Q psy3461 18 QWQLLRRGRYVEFNLIYDRGTKF 40 (87)
Q Consensus 18 ~wQ~~RRGRYvEFNLvyDRGT~F 40 (87)
+---|--|.||.||+-|+-.+.+
T Consensus 71 KLdnLGDGdYVdF~ItY~~~~~~ 93 (273)
T 3cvz_A 71 QLDKLGDGDYVDFSVDYNLENKI 93 (273)
T ss_dssp HHHTCCTTCEEEEEEEEEGGGCC
T ss_pred HhcCCCCCCeEEEEEeecCccce
Confidence 34445679999999999977665
No 6
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=19.05 E-value=12 Score=25.19 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=16.4
Q ss_pred eecccCCCCceeeeeccCCCc
Q psy3461 39 KFGLQTPGARYESILMSLPLT 59 (87)
Q Consensus 39 ~FGL~t~g~R~EsILmSlPp~ 59 (87)
-|||..+ .|-.+|.|||..
T Consensus 115 ~FGl~~p--~V~~lie~Lpg~ 133 (146)
T 2wzo_A 115 FFGFSHP--AIHNLIQSCPGA 133 (146)
T ss_dssp HHTTTSH--HHHHHHTTSTTG
T ss_pred eecCCCH--HHHHHHHhCCCc
Confidence 5999876 799999999974
No 7
>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1
Probab=17.03 E-value=90 Score=20.57 Aligned_cols=40 Identities=8% Similarity=0.107 Sum_probs=26.4
Q ss_pred ccCCCCCCHHHHHHHHHhhcceeE-------------eEEeeeccceecccCC
Q psy3461 6 KNKDAGYGYHERQWQLLRRGRYVE-------------FNLIYDRGTKFGLQTP 45 (87)
Q Consensus 6 rr~~~~~t~~er~wQ~~RRGRYvE-------------FNLvyDRGT~FGL~t~ 45 (87)
||++...+++|.-+++++...+.= .|.+||.|+.+...+.
T Consensus 6 Rr~~~~~~d~e~i~~~L~~~~~~~Lat~~~g~P~~~Pv~f~~~~~~ly~hta~ 58 (185)
T 2hti_A 6 RYTKRECKDEKKITEFLNKARTGFLGLSTNDQPYVIPLNFVWHNHAIYFHGAS 58 (185)
T ss_dssp -----CCCCHHHHHHHHHHCCCEEEEEEETTEEEEEEECCEEETTEEEEEEES
T ss_pred ccccccCCCHHHHHHHHhcCCEEEEEEeeCCEEEEEEEEEEEECCEEEEEeCC
Confidence 677888999999999999887753 5667787777655443
No 8
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=16.30 E-value=44 Score=25.55 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=17.2
Q ss_pred cceecccCCCCceeeeeccC
Q psy3461 37 GTKFGLQTPGARYESILMSL 56 (87)
Q Consensus 37 GT~FGL~t~g~R~EsILmSl 56 (87)
+|++|+-++|--.++||||-
T Consensus 138 nt~~GiY~~~CGLdnv~msW 157 (250)
T 2ibn_A 138 STELGMYQPHCGLDRVLMSW 157 (250)
T ss_dssp SSSSTTCCTTCCGGGSCBCC
T ss_pred cccCCcccCCCCccceeecc
Confidence 69999998876799999973
No 9
>1yll_A PA5104, conserved hypothetical protein; structural genomics, beta-BA PSI, protein structure initiative, midwest center for struc genomics; 1.64A {Pseudomonas aeruginosa} SCOP: b.82.1.17
Probab=15.16 E-value=73 Score=22.77 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=11.6
Q ss_pred cceeEeEEeeecc
Q psy3461 25 GRYVEFNLIYDRG 37 (87)
Q Consensus 25 GRYvEFNLvyDRG 37 (87)
|.-.-|||+|+||
T Consensus 106 G~~~DfNlM~rr~ 118 (200)
T 1yll_A 106 GAIRDFNLIYAPR 118 (200)
T ss_dssp SCEEEEEEEECTT
T ss_pred CCEEEEEEEEcCC
Confidence 6777899999998
No 10
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=14.34 E-value=63 Score=21.19 Aligned_cols=13 Identities=38% Similarity=0.991 Sum_probs=10.7
Q ss_pred HHHHHHhcCCCCC
Q psy3461 75 GQLIKILKNPKEW 87 (87)
Q Consensus 75 a~l~~~l~~PrdW 87 (87)
..|-++|.+|++|
T Consensus 50 gtlSdlL~~PKpW 62 (101)
T 1wh6_A 50 GSVSDMLSRPKPW 62 (101)
T ss_dssp HHHHHHHHSCCCT
T ss_pred CcHHHHhcCCCCH
Confidence 4577889999998
Done!