RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3461
         (87 letters)



>gnl|CDD|216370 pfam01218, Coprogen_oxidas, Coproporphyrinogen III oxidase. 
          Length = 296

 Score =  158 bits (403), Expect = 4e-50
 Identities = 50/84 (59%), Positives = 61/84 (72%), Gaps = 1/84 (1%)

Query: 4   VKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTAKWE 63
           V++ KD  YG  ER++QL RRGRYVEFNL+YDRGT FGLQT G R ESILMSLP  A+WE
Sbjct: 213 VERRKDTPYGEREREFQLYRRGRYVEFNLVYDRGTLFGLQTGG-RTESILMSLPPLARWE 271

Query: 64  YMHTPEETSKEGQLIKILKNPKEW 87
           Y   PE  S E +L ++   P++W
Sbjct: 272 YDWQPEPGSPEARLYEVFLKPRDW 295


>gnl|CDD|215471 PLN02873, PLN02873, coproporphyrinogen-III oxidase.
          Length = 274

 Score =  140 bits (354), Expect = 4e-43
 Identities = 52/84 (61%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 4   VKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTAKWE 63
           V+K KD  +   ++ WQ LRRGRYVEFNL+YDRGT FGL+T G R ESIL+SLP TA+WE
Sbjct: 191 VEKRKDDPFTEEQKAWQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPPTARWE 249

Query: 64  YMHTPEETSKEGQLIKILKNPKEW 87
           Y H PEE S+E +L+  L+NP+EW
Sbjct: 250 YDHQPEEGSEEAELLDALRNPREW 273


>gnl|CDD|235413 PRK05330, PRK05330, coproporphyrinogen III oxidase; Provisional.
          Length = 300

 Score =  136 bits (344), Expect = 3e-41
 Identities = 51/84 (60%), Positives = 61/84 (72%), Gaps = 2/84 (2%)

Query: 4   VKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTAKWE 63
           V++ KD  YG  ER++QL RRGRYVEFNL+YDRGT FGLQT G R ESILMSLP   +WE
Sbjct: 218 VERRKDTPYGEREREFQLYRRGRYVEFNLVYDRGTLFGLQT-GGRTESILMSLPPLVRWE 276

Query: 64  YMHTPEETSKEGQLIKILKNPKEW 87
           Y + PE  S E +L   LK P++W
Sbjct: 277 YDYQPEPGSPEARLSDFLK-PRDW 299


>gnl|CDD|223485 COG0408, HemF, Coproporphyrinogen III oxidase [Coenzyme
           metabolism].
          Length = 303

 Score =  122 bits (309), Expect = 5e-36
 Identities = 48/84 (57%), Positives = 59/84 (70%), Gaps = 2/84 (2%)

Query: 4   VKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTAKWE 63
           V++ K+  +   ER++QL RRGRYVEFNL+YDRGT FGLQT G R ESILMSLP   +WE
Sbjct: 221 VERRKNMPWTEREREFQLYRRGRYVEFNLVYDRGTLFGLQTGG-RVESILMSLPPLVRWE 279

Query: 64  YMHTPEETSKEGQLIKILKNPKEW 87
           Y + PE  S E  L   LK P++W
Sbjct: 280 YDYQPEPGSPEAALSVFLK-PRDW 302


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,563,557
Number of extensions: 354413
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 6
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)