RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3461
         (87 letters)



>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania
           major [TaxId: 5664]}
          Length = 302

 Score =  125 bits (315), Expect = 1e-37
 Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 4   VKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTAKWE 63
           V + K+  Y   + ++Q  RRGRY EFNL+ DRGTKFGLQ+ G R ESIL+SLP  A+W 
Sbjct: 219 VNRRKNTPYTEQQVEFQEFRRGRYAEFNLVIDRGTKFGLQS-GGRTESILISLPPRARWG 277

Query: 64  YMHTPEETSKEGQLIKILKNPKEW 87
           Y   PE  + E +L +     ++W
Sbjct: 278 YNWQPEPGTPEARLTEYFLTKRQW 301


>d1tkla_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 325

 Score =  123 bits (310), Expect = 9e-37
 Identities = 51/84 (60%), Positives = 63/84 (75%)

Query: 4   VKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFGLQTPGARYESILMSLPLTAKWE 63
           VK+ KD  Y   E+QWQ +RRGRYVEFNLIYDRGT+FGL+TPG+R ESILMSLP  A W 
Sbjct: 240 VKRRKDMPYTKEEQQWQAIRRGRYVEFNLIYDRGTQFGLRTPGSRVESILMSLPEHASWL 299

Query: 64  YMHTPEETSKEGQLIKILKNPKEW 87
           Y H P   S+E +L+++   P+EW
Sbjct: 300 YNHHPAPGSREAKLLEVTTKPREW 323


>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX,
           catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 255

 Score = 26.5 bits (58), Expect = 0.35
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 10/77 (12%)

Query: 1   MIPVKKNKDAGYGYHERQWQLLRR-----GRYVEFNLIYDRGTKFG-LQTPGARYESILM 54
                K  D     H    + L           +  ++   GT  G +    A   +  +
Sbjct: 93  KGTAIKIMDRSVICHPTIVRWLEELAKKHEIPYQLEILLGGGTDAGAIHLTKAGVPTGAL 152

Query: 55  SLPLTAKWEYMHTPEET 71
           S+P      Y+H+  E 
Sbjct: 153 SVPA----RYIHSNTEV 165


>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048,
           catalytic domain {Thermotoga maritima [TaxId: 2336]}
          Length = 248

 Score = 23.8 bits (50), Expect = 3.2
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 1   MIPVKKNKDAGYGYHERQWQLLRRGRYVEFNLIYDRGTKFG-LQTPGARYESILMSLPLT 59
           +I +    D        +          E  +    GT+   +Q       + L+S+PL 
Sbjct: 160 VIGLGPVVDRNLVQKIIEIAKKHNVSLQEEAVGGRSGTETDFVQLVRNGVRTSLISIPL- 218

Query: 60  AKWEYMHTPEET-SKEG--QLIKILK 82
              +YMHTP E        +L ++L 
Sbjct: 219 ---KYMHTPVEMVDPRDVEELARLLS 241


>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE
           {Bacillus cereus [TaxId: 1396]}
          Length = 233

 Score = 23.8 bits (51), Expect = 3.5
 Identities = 4/34 (11%), Positives = 10/34 (29%), Gaps = 6/34 (17%)

Query: 51  SILMSLPLTAKWEYMHTPEETSKEG--QLIKILK 82
             L+   +    +  H  E T +        ++ 
Sbjct: 195 HALIGAGI----DSSHAFERTHESSIAHTEALVY 224


>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL,
           amidotransferase domain {Salmonella typhimurium [TaxId:
           90371]}
          Length = 262

 Score = 23.6 bits (50), Expect = 4.2
 Identities = 4/27 (14%), Positives = 11/27 (40%)

Query: 61  KWEYMHTPEETSKEGQLIKILKNPKEW 87
                  PE   ++   ++I +N ++ 
Sbjct: 234 TVANSWHPENWGEDSPWMRIFRNARKQ 260


>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049
           {Thermotoga maritima [TaxId: 2336]}
          Length = 255

 Score = 23.4 bits (49), Expect = 5.4
 Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 10/77 (12%)

Query: 1   MIPVKKNKDAGYGYH-ERQWQLLRRGRYVEFNLIYDRGTKFG-----LQTPGARYESILM 54
             P       GY    E    ++   +  +      R T  G              + ++
Sbjct: 156 DGPAITFYHRGYVIPKEIFQTIVDTAKNNDIPFQMKRRTAGGTDAGRYARTAYGVPAGVI 215

Query: 55  SLPLTAKWEYMHTPEET 71
           S P      Y+H+P   
Sbjct: 216 STPA----RYIHSPNSI 228


>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella
           flexneri [TaxId: 623]}
          Length = 264

 Score = 23.3 bits (49), Expect = 5.7
 Identities = 3/29 (10%), Positives = 7/29 (24%), Gaps = 4/29 (13%)

Query: 43  QTPGARYESILMSLPLTAKWEYMHTPEET 71
              G    +++M         + H     
Sbjct: 208 HLTGTGVPTLVMGPAT----RHGHCAASI 232


>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type
           2 [TaxId: 10515]}
          Length = 646

 Score = 22.8 bits (49), Expect = 8.4
 Identities = 9/22 (40%), Positives = 9/22 (40%), Gaps = 6/22 (27%)

Query: 15  HERQW------QLLRRGRYVEF 30
           H R         LL  GRYV F
Sbjct: 548 HHRNAGLRYRSMLLGNGRYVPF 569


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 347,721
Number of extensions: 13475
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 9
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)