Query psy3462
Match_columns 795
No_of_seqs 665 out of 2859
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 17:20:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a15_A XPD helicase, ATP-depen 100.0 7.6E-32 2.6E-36 308.5 8.9 101 580-691 499-614 (620)
2 3iz5_g 60S ribosomal protein L 100.0 2.1E-30 7.2E-35 241.6 7.6 83 112-194 4-86 (123)
3 3u5e_d L34, YL28, 60S ribosoma 100.0 2.4E-30 8.2E-35 238.5 6.6 78 117-194 1-78 (113)
4 2zkr_x 60S ribosomal protein L 100.0 4.4E-30 1.5E-34 240.4 5.8 81 114-194 11-91 (125)
5 3j21_a 50S ribosomal protein L 100.0 1.4E-29 4.7E-34 227.2 7.3 76 120-195 3-78 (95)
6 4a17_W RPL31, 60S ribosomal pr 100.0 3.5E-29 1.2E-33 230.2 6.4 74 121-194 4-77 (111)
7 1vq8_X 50S ribosomal protein L 99.9 1.1E-28 3.7E-33 220.7 7.0 74 120-194 3-78 (92)
8 3crv_A XPD/RAD3 related DNA he 99.9 5E-24 1.7E-28 239.5 20.6 108 555-672 414-544 (551)
9 2vl7_A XPD; helicase, unknown 99.9 1.8E-23 6.3E-28 234.8 8.4 106 555-661 406-531 (540)
10 4a15_A XPD helicase, ATP-depen 99.2 5.1E-12 1.7E-16 145.1 7.1 64 19-99 2-65 (620)
11 3crv_A XPD/RAD3 related DNA he 99.0 2.9E-10 1E-14 128.0 8.0 61 18-99 1-61 (551)
12 2vl7_A XPD; helicase, unknown 98.9 5.3E-10 1.8E-14 125.9 6.8 62 16-98 3-64 (540)
13 3iuy_A Probable ATP-dependent 98.4 4.5E-07 1.5E-11 89.1 7.6 47 16-66 38-84 (228)
14 3fe2_A Probable ATP-dependent 98.4 7E-07 2.4E-11 89.1 8.5 51 12-66 43-93 (242)
15 2pl3_A Probable ATP-dependent 98.3 1.4E-06 4.9E-11 86.0 9.1 50 13-66 40-89 (236)
16 1vec_A ATP-dependent RNA helic 98.3 1.3E-06 4.4E-11 84.0 7.8 50 11-64 16-65 (206)
17 1wrb_A DJVLGB; RNA helicase, D 98.3 1.3E-06 4.6E-11 87.2 7.8 51 14-68 39-89 (253)
18 3dkp_A Probable ATP-dependent 98.3 1.3E-06 4.5E-11 86.7 7.5 46 15-64 46-91 (245)
19 2i4i_A ATP-dependent RNA helic 98.2 2E-06 7E-11 90.6 9.1 52 13-68 30-81 (417)
20 1qde_A EIF4A, translation init 98.2 1.8E-06 6.2E-11 84.2 7.5 51 9-64 26-76 (224)
21 1q0u_A Bstdead; DEAD protein, 98.2 1.3E-06 4.4E-11 85.5 6.3 49 12-64 18-66 (219)
22 2gxq_A Heat resistant RNA depe 98.2 2.1E-06 7.1E-11 82.4 7.4 50 12-65 15-64 (207)
23 3ber_A Probable ATP-dependent 98.2 2.4E-06 8E-11 86.4 7.9 54 9-66 54-107 (249)
24 2oxc_A Probable ATP-dependent 98.2 2.8E-06 9.4E-11 84.1 7.4 49 12-64 38-86 (230)
25 2db3_A ATP-dependent RNA helic 98.1 3.2E-06 1.1E-10 92.0 8.3 50 14-67 72-121 (434)
26 3ly5_A ATP-dependent RNA helic 98.1 4.3E-06 1.5E-10 85.1 8.7 48 16-67 72-119 (262)
27 3oiy_A Reverse gyrase helicase 98.1 2.8E-06 9.4E-11 90.6 6.4 54 7-64 8-61 (414)
28 1t6n_A Probable ATP-dependent 98.1 5E-06 1.7E-10 81.1 7.3 53 7-64 24-76 (220)
29 3fmo_B ATP-dependent RNA helic 98.1 4.5E-06 1.5E-10 87.1 7.4 46 15-64 109-156 (300)
30 3bor_A Human initiation factor 98.0 3.5E-06 1.2E-10 83.9 5.4 46 15-64 47-92 (237)
31 3sqw_A ATP-dependent RNA helic 98.0 1.1E-05 3.8E-10 90.7 9.2 55 11-67 34-88 (579)
32 3b6e_A Interferon-induced heli 98.0 9.3E-06 3.2E-10 77.8 6.9 56 7-66 20-75 (216)
33 3pey_A ATP-dependent RNA helic 98.0 1.4E-05 5E-10 82.7 8.8 53 7-64 15-69 (395)
34 2z0m_A 337AA long hypothetical 98.0 9.6E-06 3.3E-10 82.4 7.2 46 13-62 9-54 (337)
35 3i5x_A ATP-dependent RNA helic 97.9 1.3E-05 4.4E-10 89.1 7.7 52 14-67 88-139 (563)
36 3fht_A ATP-dependent RNA helic 97.9 1.7E-05 5.7E-10 83.1 7.4 54 8-64 36-89 (412)
37 1s2m_A Putative ATP-dependent 97.9 2E-05 6.7E-10 82.8 7.8 53 7-64 31-83 (400)
38 1xti_A Probable ATP-dependent 97.8 1.6E-05 5.5E-10 82.8 6.6 46 15-64 25-70 (391)
39 2j0s_A ATP-dependent RNA helic 97.8 1.8E-05 6.2E-10 83.5 6.5 45 16-64 55-99 (410)
40 2v1x_A ATP-dependent DNA helic 97.8 1.9E-05 6.6E-10 90.3 7.0 52 7-62 31-82 (591)
41 3eiq_A Eukaryotic initiation f 97.8 2.2E-05 7.4E-10 82.5 6.8 52 8-64 51-102 (414)
42 1fuu_A Yeast initiation factor 97.8 1.4E-05 4.7E-10 83.2 5.3 53 7-64 31-83 (394)
43 1hv8_A Putative ATP-dependent 97.8 2.2E-05 7.6E-10 80.5 6.2 49 13-64 21-69 (367)
44 3fmp_B ATP-dependent RNA helic 97.8 2.8E-05 9.7E-10 84.7 7.2 52 7-63 102-155 (479)
45 3fe2_A Probable ATP-dependent 97.8 2.8E-05 9.7E-10 77.4 6.5 46 246-318 47-93 (242)
46 3oiy_A Reverse gyrase helicase 97.8 2.6E-05 8.8E-10 83.1 6.5 76 245-351 17-100 (414)
47 3iuy_A Probable ATP-dependent 97.7 3E-05 1E-09 76.1 5.8 46 246-318 38-84 (228)
48 1vec_A ATP-dependent RNA helic 97.7 3.5E-05 1.2E-09 74.0 6.1 44 246-316 21-65 (206)
49 1oyw_A RECQ helicase, ATP-depe 97.7 2.6E-05 8.8E-10 87.6 5.7 52 7-62 12-63 (523)
50 1wrb_A DJVLGB; RNA helicase, D 97.7 5.7E-05 2E-09 75.4 7.7 46 246-318 41-87 (253)
51 3dkp_A Probable ATP-dependent 97.7 3.7E-05 1.3E-09 76.2 6.3 45 246-317 47-92 (245)
52 4a2p_A RIG-I, retinoic acid in 97.7 3.4E-05 1.2E-09 84.2 6.3 46 16-65 3-48 (556)
53 3tbk_A RIG-I helicase domain; 97.7 4.3E-05 1.5E-09 83.1 6.9 45 18-66 2-46 (555)
54 3ber_A Probable ATP-dependent 97.6 6.7E-05 2.3E-09 75.7 7.1 47 245-318 60-107 (249)
55 1qde_A EIF4A, translation init 97.6 4.3E-05 1.5E-09 74.4 5.1 45 245-316 31-76 (224)
56 1t6n_A Probable ATP-dependent 97.6 6.5E-05 2.2E-09 73.2 6.1 44 246-316 32-76 (220)
57 2ykg_A Probable ATP-dependent 97.6 7E-05 2.4E-09 85.2 6.9 49 13-65 6-54 (696)
58 3ly5_A ATP-dependent RNA helic 97.6 7.7E-05 2.6E-09 75.8 6.4 46 246-318 72-118 (262)
59 2oxc_A Probable ATP-dependent 97.6 7.6E-05 2.6E-09 73.8 6.1 45 245-316 41-86 (230)
60 3b6e_A Interferon-induced heli 97.6 0.00016 5.4E-09 69.2 8.1 47 246-319 30-76 (216)
61 2gxq_A Heat resistant RNA depe 97.5 8E-05 2.7E-09 71.3 5.7 45 246-317 19-64 (207)
62 2pl3_A Probable ATP-dependent 97.5 8.5E-05 2.9E-09 73.2 5.9 46 246-318 43-89 (236)
63 1q0u_A Bstdead; DEAD protein, 97.5 6.3E-05 2.1E-09 73.5 4.8 44 246-316 22-66 (219)
64 3tbk_A RIG-I helicase domain; 97.5 0.00017 5.9E-09 78.3 8.5 46 247-319 2-47 (555)
65 1gm5_A RECG; helicase, replica 97.5 0.00012 4.3E-09 86.5 7.8 58 7-65 356-415 (780)
66 3bor_A Human initiation factor 97.5 6.5E-05 2.2E-09 74.8 4.2 45 245-316 47-92 (237)
67 3sqw_A ATP-dependent RNA helic 97.4 0.00016 5.6E-09 81.3 7.7 50 245-319 38-88 (579)
68 2i4i_A ATP-dependent RNA helic 97.4 0.00011 3.9E-09 77.3 6.0 47 246-319 33-80 (417)
69 3i5x_A ATP-dependent RNA helic 97.4 0.00018 6E-09 80.0 7.7 51 245-320 89-140 (563)
70 4gl2_A Interferon-induced heli 97.4 0.00012 4.2E-09 83.2 6.6 47 17-67 4-50 (699)
71 2va8_A SSO2462, SKI2-type heli 97.4 0.00025 8.5E-09 81.7 8.8 54 8-65 18-72 (715)
72 2zj8_A DNA helicase, putative 97.4 0.00019 6.3E-09 83.0 7.3 54 8-65 11-65 (720)
73 2p6r_A Afuhel308 helicase; pro 97.4 0.00013 4.3E-09 84.2 5.6 54 8-65 13-66 (702)
74 1gm5_A RECG; helicase, replica 97.3 0.00042 1.4E-08 82.1 9.3 83 245-351 364-454 (780)
75 4ddu_A Reverse gyrase; topoiso 97.3 0.00028 9.5E-09 86.4 7.7 52 9-64 67-118 (1104)
76 2z0m_A 337AA long hypothetical 97.3 0.00024 8.2E-09 72.1 5.9 43 245-314 11-54 (337)
77 1xti_A Probable ATP-dependent 97.3 0.00019 6.7E-09 74.7 5.3 45 246-317 26-71 (391)
78 2j0s_A ATP-dependent RNA helic 97.3 0.00022 7.7E-09 75.2 5.6 46 245-317 54-100 (410)
79 2db3_A ATP-dependent RNA helic 97.3 0.00025 8.7E-09 77.0 6.1 46 246-318 74-120 (434)
80 4a2q_A RIG-I, retinoic acid in 97.3 0.00025 8.4E-09 83.2 6.4 45 17-65 245-289 (797)
81 1s2m_A Putative ATP-dependent 97.2 0.0003 1E-08 73.8 6.4 45 246-317 39-84 (400)
82 3fmo_B ATP-dependent RNA helic 97.2 0.00018 6.1E-09 75.0 4.5 46 246-316 110-156 (300)
83 4a2p_A RIG-I, retinoic acid in 97.2 0.00025 8.7E-09 77.4 5.7 46 246-318 4-49 (556)
84 3l9o_A ATP-dependent RNA helic 97.2 0.00039 1.3E-08 85.1 7.9 47 15-65 179-225 (1108)
85 3llm_A ATP-dependent RNA helic 97.2 0.00024 8.1E-09 70.8 4.7 44 18-65 59-102 (235)
86 4gl2_A Interferon-induced heli 97.2 0.00043 1.5E-08 78.8 7.4 75 247-352 5-94 (699)
87 1fuu_A Yeast initiation factor 97.2 0.00023 7.8E-09 74.1 4.5 46 246-318 39-85 (394)
88 2v1x_A ATP-dependent DNA helic 97.1 0.00026 9E-09 81.0 4.8 43 245-314 39-82 (591)
89 3eiq_A Eukaryotic initiation f 97.1 0.00042 1.4E-08 72.7 5.8 45 246-317 58-103 (414)
90 3fho_A ATP-dependent RNA helic 97.1 0.00013 4.5E-09 81.1 1.9 44 17-64 138-183 (508)
91 2xgj_A ATP-dependent RNA helic 97.1 0.00065 2.2E-08 82.5 7.9 45 17-65 83-127 (1010)
92 3fht_A ATP-dependent RNA helic 97.1 0.00044 1.5E-08 72.3 5.5 47 246-317 43-90 (412)
93 3pey_A ATP-dependent RNA helic 97.1 0.00044 1.5E-08 71.6 5.5 47 246-317 23-70 (395)
94 1tf5_A Preprotein translocase 97.1 0.00044 1.5E-08 82.4 6.1 39 19-63 82-120 (844)
95 1hv8_A Putative ATP-dependent 97.1 0.00056 1.9E-08 70.1 6.1 47 246-318 24-71 (367)
96 1rif_A DAR protein, DNA helica 97.0 0.00094 3.2E-08 68.1 7.2 42 19-64 112-153 (282)
97 2eyq_A TRCF, transcription-rep 97.0 0.001 3.5E-08 81.8 8.5 57 7-64 591-649 (1151)
98 2z83_A Helicase/nucleoside tri 97.0 0.00026 8.8E-09 78.1 2.8 38 28-65 10-47 (459)
99 1wp9_A ATP-dependent RNA helic 97.0 0.00066 2.3E-08 71.2 5.7 43 18-65 7-49 (494)
100 4ddu_A Reverse gyrase; topoiso 97.0 0.00099 3.4E-08 81.6 7.9 76 245-351 74-157 (1104)
101 4a2w_A RIG-I, retinoic acid in 97.0 0.00057 1.9E-08 82.1 5.7 44 17-64 245-288 (936)
102 3fmp_B ATP-dependent RNA helic 96.9 0.00056 1.9E-08 74.5 5.0 47 246-317 110-157 (479)
103 2eyq_A TRCF, transcription-rep 96.9 0.0016 5.4E-08 80.1 9.1 82 244-350 598-688 (1151)
104 2fwr_A DNA repair protein RAD2 96.9 0.00089 3.1E-08 72.7 6.2 41 18-62 91-131 (472)
105 1oyw_A RECQ helicase, ATP-depe 96.9 0.00036 1.2E-08 78.3 2.9 43 245-314 20-63 (523)
106 2xgj_A ATP-dependent RNA helic 96.8 0.0012 4.1E-08 80.2 7.1 50 243-319 80-129 (1010)
107 2oca_A DAR protein, ATP-depend 96.8 0.0013 4.5E-08 72.1 6.8 56 247-329 111-175 (510)
108 1gku_B Reverse gyrase, TOP-RG; 96.8 0.0014 4.8E-08 79.8 7.7 52 9-66 46-97 (1054)
109 4a4z_A Antiviral helicase SKI2 96.8 0.001 3.5E-08 80.7 6.4 54 8-65 24-80 (997)
110 2jlq_A Serine protease subunit 96.8 0.00022 7.6E-09 78.3 0.6 43 19-65 3-45 (451)
111 2fz4_A DNA repair protein RAD2 96.8 0.0013 4.3E-08 66.4 6.0 40 18-61 91-130 (237)
112 4a4z_A Antiviral helicase SKI2 96.8 0.001 3.4E-08 80.7 6.1 51 242-319 32-82 (997)
113 2oca_A DAR protein, ATP-depend 96.8 0.00085 2.9E-08 73.6 4.8 43 18-64 111-153 (510)
114 3l9o_A ATP-dependent RNA helic 96.7 0.001 3.5E-08 81.5 5.6 62 241-329 176-245 (1108)
115 2ykg_A Probable ATP-dependent 96.7 0.0015 5E-08 74.4 6.4 48 245-319 8-56 (696)
116 1wp9_A ATP-dependent RNA helic 96.7 0.0011 3.6E-08 69.7 4.5 42 248-317 8-49 (494)
117 2fsf_A Preprotein translocase 96.7 0.0013 4.6E-08 78.4 5.7 40 19-64 73-112 (853)
118 1nkt_A Preprotein translocase 96.6 0.0013 4.4E-08 78.9 5.1 41 18-64 109-149 (922)
119 1rif_A DAR protein, DNA helica 96.6 0.0038 1.3E-07 63.6 7.5 43 248-317 112-154 (282)
120 2whx_A Serine protease/ntpase/ 96.5 0.00044 1.5E-08 79.7 0.5 43 19-65 170-212 (618)
121 2fwr_A DNA repair protein RAD2 96.5 0.0017 6E-08 70.4 5.1 44 245-315 89-132 (472)
122 3h1t_A Type I site-specific re 96.5 0.0029 1E-07 71.1 6.7 41 19-59 177-218 (590)
123 4f92_B U5 small nuclear ribonu 96.4 0.0039 1.3E-07 79.7 7.8 54 8-66 915-969 (1724)
124 4f92_B U5 small nuclear ribonu 96.4 0.0026 9E-08 81.2 6.3 45 18-66 77-122 (1724)
125 4a2q_A RIG-I, retinoic acid in 96.4 0.0027 9.1E-08 74.5 5.9 46 247-319 246-291 (797)
126 2fz4_A DNA repair protein RAD2 96.4 0.0028 9.6E-08 63.8 5.1 43 243-312 87-129 (237)
127 2wv9_A Flavivirin protease NS2 96.3 0.0004 1.4E-08 80.9 -1.6 46 20-65 215-267 (673)
128 1yks_A Genome polyprotein [con 96.3 0.00096 3.3E-08 73.2 1.4 31 35-65 4-34 (440)
129 2p6r_A Afuhel308 helicase; pro 96.2 0.0022 7.4E-08 74.0 4.0 75 246-351 21-104 (702)
130 3h1t_A Type I site-specific re 96.2 0.0046 1.6E-07 69.5 6.5 44 248-313 177-220 (590)
131 2zj8_A DNA helicase, putative 96.1 0.0033 1.1E-07 72.6 4.7 46 246-317 19-65 (720)
132 2ipc_A Preprotein translocase 96.1 0.0041 1.4E-07 74.8 5.3 41 18-64 77-117 (997)
133 2va8_A SSO2462, SKI2-type heli 96.1 0.0044 1.5E-07 71.3 5.4 46 246-317 26-72 (715)
134 1yks_A Genome polyprotein [con 96.0 0.0034 1.1E-07 68.9 4.0 32 288-319 5-36 (440)
135 2z83_A Helicase/nucleoside tri 96.0 0.0038 1.3E-07 68.7 4.4 32 287-318 17-48 (459)
136 4a2w_A RIG-I, retinoic acid in 95.8 0.0062 2.1E-07 73.2 5.4 45 247-318 246-290 (936)
137 2jlq_A Serine protease subunit 95.8 0.004 1.4E-07 68.3 3.2 35 285-319 12-47 (451)
138 1gku_B Reverse gyrase, TOP-RG; 95.8 0.0073 2.5E-07 73.6 5.8 44 246-318 54-97 (1054)
139 2v6i_A RNA helicase; membrane, 95.7 0.0038 1.3E-07 68.2 2.9 26 39-64 2-27 (431)
140 2whx_A Serine protease/ntpase/ 95.7 0.0059 2E-07 70.4 4.5 35 285-319 180-214 (618)
141 3fho_A ATP-dependent RNA helic 95.7 0.0038 1.3E-07 69.4 2.7 45 249-318 141-185 (508)
142 3llm_A ATP-dependent RNA helic 95.7 0.0069 2.4E-07 60.2 4.3 34 283-316 68-101 (235)
143 1tf5_A Preprotein translocase 95.5 0.009 3.1E-07 71.4 5.2 42 246-316 80-121 (844)
144 2v6i_A RNA helicase; membrane, 95.4 0.0087 3E-07 65.4 4.1 39 291-329 2-49 (431)
145 2wv9_A Flavivirin protease NS2 95.1 0.011 3.8E-07 68.9 3.8 31 289-319 239-269 (673)
146 2w00_A HSDR, R.ECOR124I; ATP-b 94.9 0.018 6.3E-07 70.3 5.3 44 19-63 270-323 (1038)
147 1z63_A Helicase of the SNF2/RA 94.7 0.041 1.4E-06 60.1 6.8 40 20-59 37-76 (500)
148 2fsf_A Preprotein translocase 94.5 0.028 9.7E-07 67.2 5.3 42 246-316 71-112 (853)
149 1nkt_A Preprotein translocase 94.4 0.026 8.9E-07 67.9 4.9 43 246-317 108-150 (922)
150 3o8b_A HCV NS3 protease/helica 93.7 0.006 2E-07 71.3 -2.4 33 30-62 223-255 (666)
151 2xau_A PRE-mRNA-splicing facto 93.6 0.043 1.5E-06 64.9 4.4 39 19-62 92-130 (773)
152 3upu_A ATP-dependent DNA helic 93.5 0.13 4.5E-06 56.5 8.0 64 18-98 23-87 (459)
153 1z63_A Helicase of the SNF2/RA 93.1 0.11 3.9E-06 56.6 6.6 45 245-312 33-77 (500)
154 2ipc_A Preprotein translocase 92.7 0.077 2.6E-06 64.1 4.7 42 246-316 76-117 (997)
155 3jux_A Protein translocase sub 92.5 0.11 3.7E-06 61.8 5.6 43 17-65 72-114 (822)
156 3o8b_A HCV NS3 protease/helica 91.9 0.048 1.7E-06 63.8 1.8 31 284-314 225-255 (666)
157 4b3f_X DNA-binding protein smu 91.6 0.22 7.6E-06 57.1 6.8 56 23-99 192-247 (646)
158 3n70_A Transport activator; si 91.2 0.17 5.8E-06 46.6 4.4 27 27-53 12-38 (145)
159 2w00_A HSDR, R.ECOR124I; ATP-b 91.2 0.14 4.9E-06 62.6 4.8 55 248-316 270-324 (1038)
160 1w36_D RECD, exodeoxyribonucle 90.8 0.17 5.9E-06 58.0 4.8 57 22-98 151-209 (608)
161 2r44_A Uncharacterized protein 90.7 0.12 4.1E-06 53.5 3.1 45 7-53 16-60 (331)
162 3co5_A Putative two-component 90.6 0.17 5.9E-06 46.6 3.8 27 27-53 15-41 (143)
163 3dmq_A RNA polymerase-associat 90.3 0.3 1E-05 59.1 6.5 44 18-63 151-194 (968)
164 2w58_A DNAI, primosome compone 90.2 0.28 9.7E-06 46.8 5.1 32 23-54 32-69 (202)
165 3ec2_A DNA replication protein 89.3 0.37 1.3E-05 45.4 5.0 36 18-53 11-52 (180)
166 1jbk_A CLPB protein; beta barr 88.9 0.28 9.5E-06 44.8 3.7 34 21-54 23-58 (195)
167 3mwy_W Chromo domain-containin 88.4 0.57 1.9E-05 55.2 6.8 43 19-61 235-277 (800)
168 1z3i_X Similar to RAD54-like; 88.4 0.55 1.9E-05 54.0 6.5 44 20-63 55-103 (644)
169 3upu_A ATP-dependent DNA helic 88.3 0.67 2.3E-05 50.9 6.9 51 246-319 21-72 (459)
170 3dmq_A RNA polymerase-associat 87.9 0.5 1.7E-05 57.1 6.1 49 246-319 150-198 (968)
171 3nbx_X ATPase RAVA; AAA+ ATPas 87.5 0.26 8.8E-06 55.7 3.1 45 7-53 11-55 (500)
172 1njg_A DNA polymerase III subu 87.4 0.29 1E-05 46.1 2.9 32 23-54 26-60 (250)
173 2p65_A Hypothetical protein PF 87.4 0.3 1E-05 44.8 2.9 32 22-53 24-57 (187)
174 2qgz_A Helicase loader, putati 87.3 0.75 2.6E-05 48.2 6.3 30 24-53 132-166 (308)
175 3ec2_A DNA replication protein 87.1 0.59 2E-05 44.0 4.9 41 248-306 12-53 (180)
176 2gk6_A Regulator of nonsense t 87.0 0.76 2.6E-05 52.7 6.6 57 22-99 182-238 (624)
177 2chg_A Replication factor C sm 86.5 0.39 1.3E-05 44.9 3.2 32 23-54 20-53 (226)
178 1ofh_A ATP-dependent HSL prote 86.3 0.39 1.3E-05 48.3 3.3 15 39-53 50-64 (310)
179 3hws_A ATP-dependent CLP prote 86.2 0.42 1.4E-05 50.4 3.6 17 38-54 50-66 (363)
180 2xau_A PRE-mRNA-splicing facto 86.1 0.4 1.4E-05 56.7 3.7 29 284-314 102-130 (773)
181 2bjv_A PSP operon transcriptio 86.1 0.5 1.7E-05 47.2 4.0 27 27-53 17-43 (265)
182 1jbk_A CLPB protein; beta barr 85.9 0.44 1.5E-05 43.4 3.2 17 291-307 43-59 (195)
183 3n70_A Transport activator; si 85.6 0.72 2.5E-05 42.4 4.5 17 290-306 23-39 (145)
184 3rc3_A ATP-dependent RNA helic 85.4 0.4 1.4E-05 56.1 3.3 27 624-650 415-443 (677)
185 3bos_A Putative DNA replicatio 85.4 0.58 2E-05 44.8 3.9 29 25-53 36-66 (242)
186 1w36_D RECD, exodeoxyribonucle 85.3 0.49 1.7E-05 54.3 3.9 24 291-314 164-189 (608)
187 3rc3_A ATP-dependent RNA helic 85.0 0.49 1.7E-05 55.4 3.7 17 38-54 154-170 (677)
188 1iqp_A RFCS; clamp loader, ext 84.5 0.66 2.2E-05 46.9 4.0 33 22-54 27-61 (327)
189 2p65_A Hypothetical protein PF 83.5 0.48 1.6E-05 43.4 2.3 16 291-306 43-58 (187)
190 4fcw_A Chaperone protein CLPB; 82.7 0.51 1.8E-05 47.8 2.3 31 24-54 21-62 (311)
191 1sxj_D Activator 1 41 kDa subu 82.1 0.51 1.8E-05 48.5 2.1 33 22-54 39-73 (353)
192 3co5_A Putative two-component 81.9 0.7 2.4E-05 42.5 2.7 17 290-306 26-42 (143)
193 1ojl_A Transcriptional regulat 81.8 0.91 3.1E-05 47.3 3.8 28 27-54 13-40 (304)
194 3te6_A Regulatory protein SIR3 81.5 0.85 2.9E-05 48.7 3.6 32 23-54 26-60 (318)
195 3pfi_A Holliday junction ATP-d 81.5 0.68 2.3E-05 47.8 2.7 32 23-54 32-70 (338)
196 2chg_A Replication factor C sm 81.2 0.93 3.2E-05 42.3 3.3 15 292-306 39-53 (226)
197 3e1s_A Exodeoxyribonuclease V, 80.9 2.6 8.8E-05 48.2 7.4 58 19-98 188-245 (574)
198 2w58_A DNAI, primosome compone 80.9 1.1 3.7E-05 42.7 3.8 15 292-306 55-69 (202)
199 2xzl_A ATP-dependent helicase 80.7 2.2 7.7E-05 50.7 7.1 56 23-99 363-418 (802)
200 1a5t_A Delta prime, HOLB; zinc 80.1 1.7 5.7E-05 45.6 5.2 33 21-53 3-38 (334)
201 1a5t_A Delta prime, HOLB; zinc 80.0 1.5 5.2E-05 45.9 4.8 39 250-308 3-41 (334)
202 3mwy_W Chromo domain-containin 79.8 2 7E-05 50.5 6.3 43 248-313 235-277 (800)
203 1z3i_X Similar to RAD54-like; 79.6 2.3 8E-05 48.8 6.6 53 247-317 53-105 (644)
204 3bos_A Putative DNA replicatio 79.6 1 3.4E-05 43.2 3.0 16 291-306 52-67 (242)
205 3h4m_A Proteasome-activating n 79.6 0.87 3E-05 45.7 2.7 16 38-53 50-65 (285)
206 3b9p_A CG5977-PA, isoform A; A 78.8 0.93 3.2E-05 45.9 2.7 16 39-54 54-69 (297)
207 2wjy_A Regulator of nonsense t 78.2 2.7 9.2E-05 50.1 6.7 57 22-99 358-414 (800)
208 2r44_A Uncharacterized protein 77.9 0.62 2.1E-05 48.2 1.1 17 290-306 45-61 (331)
209 2bjv_A PSP operon transcriptio 77.6 1.9 6.4E-05 43.0 4.5 16 291-306 29-44 (265)
210 1jr3_A DNA polymerase III subu 77.6 1.5 5E-05 45.5 3.8 33 21-53 17-52 (373)
211 1hqc_A RUVB; extended AAA-ATPa 76.6 1.7 5.7E-05 44.3 3.8 14 40-53 39-52 (324)
212 3uk6_A RUVB-like 2; hexameric 76.5 1.9 6.5E-05 44.8 4.3 32 23-54 50-85 (368)
213 3syl_A Protein CBBX; photosynt 76.1 1.4 4.9E-05 44.5 3.2 15 40-54 68-82 (309)
214 2v1u_A Cell division control p 75.9 2 6.8E-05 44.3 4.2 31 24-54 23-59 (387)
215 1g8p_A Magnesium-chelatase 38 75.7 1.1 3.8E-05 46.0 2.3 31 23-53 27-59 (350)
216 3nbx_X ATPase RAVA; AAA+ ATPas 75.6 1 3.5E-05 50.9 2.0 19 288-306 38-56 (500)
217 3h4m_A Proteasome-activating n 75.4 1 3.4E-05 45.2 1.8 18 289-306 49-66 (285)
218 2qz4_A Paraplegin; AAA+, SPG7, 75.3 2.7 9.2E-05 41.3 4.8 17 290-306 38-54 (262)
219 2qz4_A Paraplegin; AAA+, SPG7, 75.1 2.8 9.5E-05 41.2 4.8 15 40-54 40-54 (262)
220 2chq_A Replication factor C sm 75.0 1.2 3.9E-05 44.9 2.1 32 23-54 20-53 (319)
221 3pxg_A Negative regulator of g 74.9 1.7 5.9E-05 48.0 3.6 35 19-53 179-215 (468)
222 3te6_A Regulatory protein SIR3 74.6 1.7 5.7E-05 46.5 3.3 19 290-308 44-62 (318)
223 1lv7_A FTSH; alpha/beta domain 74.5 2.4 8.3E-05 42.0 4.3 15 39-53 45-59 (257)
224 3hws_A ATP-dependent CLP prote 74.4 1.4 4.9E-05 46.4 2.7 16 291-306 51-66 (363)
225 1um8_A ATP-dependent CLP prote 73.9 1.9 6.4E-05 45.6 3.5 15 39-53 72-86 (376)
226 4b3f_X DNA-binding protein smu 73.9 2.1 7.1E-05 49.1 4.1 21 291-311 205-225 (646)
227 1njg_A DNA polymerase III subu 73.9 2 6.7E-05 40.4 3.3 15 292-306 46-60 (250)
228 3cf0_A Transitional endoplasmi 73.9 1.7 5.7E-05 44.8 3.0 16 39-54 49-64 (301)
229 1sxj_C Activator 1 40 kDa subu 73.7 2.3 7.9E-05 44.3 4.0 31 23-53 28-60 (340)
230 3pxi_A Negative regulator of g 73.4 1.4 4.8E-05 51.4 2.5 30 24-53 495-535 (758)
231 1l8q_A Chromosomal replication 73.4 2.6 9.1E-05 43.3 4.4 30 24-53 18-51 (324)
232 3vfd_A Spastin; ATPase, microt 73.1 1.7 5.9E-05 46.4 3.0 16 39-54 148-163 (389)
233 1g8p_A Magnesium-chelatase 38 73.1 0.92 3.1E-05 46.6 0.8 16 291-306 45-60 (350)
234 1ofh_A ATP-dependent HSL prote 73.0 1.4 4.8E-05 44.2 2.2 16 291-306 50-65 (310)
235 1fnn_A CDC6P, cell division co 72.5 4.5 0.00015 41.8 5.9 13 41-53 46-58 (389)
236 3pvs_A Replication-associated 71.7 2.1 7.1E-05 47.4 3.3 33 21-53 27-64 (447)
237 3d8b_A Fidgetin-like protein 1 71.6 1.9 6.4E-05 45.8 2.8 16 39-54 117-132 (357)
238 3uk6_A RUVB-like 2; hexameric 71.6 3 0.0001 43.2 4.4 17 291-307 70-86 (368)
239 2oap_1 GSPE-2, type II secreti 71.5 2.4 8.1E-05 47.9 3.8 27 27-53 248-274 (511)
240 2qby_B CDC6 homolog 3, cell di 71.2 2.1 7.1E-05 44.5 3.0 36 19-54 22-60 (384)
241 3k1j_A LON protease, ATP-depen 71.0 2.5 8.5E-05 48.2 3.8 31 23-53 44-74 (604)
242 3eie_A Vacuolar protein sortin 70.8 2 6.8E-05 44.6 2.8 15 40-54 52-66 (322)
243 1ojl_A Transcriptional regulat 70.6 3.2 0.00011 43.1 4.3 16 291-306 25-40 (304)
244 1sxj_B Activator 1 37 kDa subu 70.5 2.1 7E-05 43.2 2.7 31 23-53 24-56 (323)
245 2qgz_A Helicase loader, putati 69.9 2.7 9.1E-05 44.0 3.5 16 291-306 152-167 (308)
246 2c9o_A RUVB-like 1; hexameric 69.9 3.6 0.00012 45.1 4.6 28 27-54 47-78 (456)
247 3jux_A Protein translocase sub 69.8 4.3 0.00015 48.6 5.5 52 295-346 92-150 (822)
248 1iqp_A RFCS; clamp loader, ext 69.7 2.2 7.4E-05 43.1 2.7 34 253-307 29-62 (327)
249 4fcw_A Chaperone protein CLPB; 69.6 1.5 5E-05 44.4 1.4 16 292-307 48-63 (311)
250 2c9o_A RUVB-like 1; hexameric 69.1 2.1 7.1E-05 47.0 2.6 16 291-306 63-78 (456)
251 3pxg_A Negative regulator of g 69.1 2.3 7.9E-05 47.0 3.0 36 250-306 181-216 (468)
252 1in4_A RUVB, holliday junction 68.9 2.2 7.6E-05 44.7 2.7 30 24-53 29-65 (334)
253 1r6b_X CLPA protein; AAA+, N-t 68.9 1.7 6E-05 50.4 2.0 31 24-54 462-503 (758)
254 3pfi_A Holliday junction ATP-d 68.8 2.4 8.2E-05 43.7 2.8 16 292-307 56-71 (338)
255 3pxi_A Negative regulator of g 68.7 2.7 9.4E-05 49.0 3.6 36 19-54 179-216 (758)
256 2r62_A Cell division protease 68.0 2.6 8.9E-05 41.9 2.8 16 39-54 44-59 (268)
257 2chq_A Replication factor C sm 67.4 2.6 8.7E-05 42.4 2.6 34 253-307 21-54 (319)
258 3syl_A Protein CBBX; photosynt 67.3 1.9 6.6E-05 43.6 1.7 17 291-307 67-83 (309)
259 2qp9_X Vacuolar protein sortin 67.2 2.4 8.1E-05 45.1 2.5 15 40-54 85-99 (355)
260 3t15_A Ribulose bisphosphate c 67.1 3.4 0.00012 42.6 3.5 13 41-53 38-50 (293)
261 1hqc_A RUVB; extended AAA-ATPa 66.5 2.5 8.6E-05 42.9 2.4 16 291-306 38-53 (324)
262 3cf0_A Transitional endoplasmi 65.9 2.4 8.4E-05 43.6 2.2 18 289-306 47-64 (301)
263 2gk6_A Regulator of nonsense t 65.9 4.1 0.00014 46.7 4.2 18 292-309 196-213 (624)
264 1sxj_D Activator 1 41 kDa subu 65.8 4.2 0.00014 41.7 3.9 34 253-307 41-74 (353)
265 2gza_A Type IV secretion syste 65.6 3.6 0.00012 44.0 3.5 25 29-53 165-189 (361)
266 1xwi_A SKD1 protein; VPS4B, AA 65.6 3.2 0.00011 43.4 3.1 14 40-53 46-59 (322)
267 1d2n_A N-ethylmaleimide-sensit 65.0 2.2 7.7E-05 42.7 1.7 17 291-307 64-80 (272)
268 3b9p_A CG5977-PA, isoform A; A 64.8 2.7 9.1E-05 42.5 2.2 17 291-307 54-70 (297)
269 2qby_A CDC6 homolog 1, cell di 64.7 3.3 0.00011 42.5 2.9 15 39-53 45-59 (386)
270 3t15_A Ribulose bisphosphate c 64.2 2.3 8E-05 43.8 1.7 16 291-306 36-51 (293)
271 1l8q_A Chromosomal replication 64.2 4.5 0.00016 41.6 3.8 16 291-306 37-52 (324)
272 2qen_A Walker-type ATPase; unk 64.1 6.1 0.00021 40.0 4.7 16 291-306 31-46 (350)
273 3f9v_A Minichromosome maintena 63.2 2.1 7.2E-05 49.1 1.2 30 24-53 299-341 (595)
274 1d2n_A N-ethylmaleimide-sensit 63.1 3 0.0001 41.9 2.1 15 40-54 65-79 (272)
275 2qen_A Walker-type ATPase; unk 62.7 5.1 0.00017 40.6 3.8 32 19-53 14-45 (350)
276 3lfu_A DNA helicase II; SF1 he 62.6 6 0.0002 44.5 4.7 31 21-57 10-40 (647)
277 1qvr_A CLPB protein; coiled co 62.5 2.7 9.1E-05 49.9 1.9 31 24-54 562-603 (854)
278 2v1u_A Cell division control p 62.3 5 0.00017 41.3 3.7 17 291-307 44-60 (387)
279 2pt7_A CAG-ALFA; ATPase, prote 61.9 4.8 0.00017 42.6 3.6 27 27-53 159-185 (330)
280 2zan_A Vacuolar protein sortin 61.9 4 0.00014 44.7 3.1 14 40-53 168-181 (444)
281 1e9r_A Conjugal transfer prote 61.9 4 0.00014 44.0 3.0 29 505-533 295-323 (437)
282 2qmh_A HPR kinase/phosphorylas 61.5 4 0.00014 41.4 2.7 17 291-307 34-51 (205)
283 1c4o_A DNA nucleotide excision 61.3 6.5 0.00022 45.6 4.8 39 18-56 6-45 (664)
284 3eie_A Vacuolar protein sortin 61.2 3.1 0.00011 43.2 2.0 17 291-307 51-67 (322)
285 2j41_A Guanylate kinase; GMP, 61.2 3.4 0.00012 39.0 2.0 17 290-306 5-21 (207)
286 2kjq_A DNAA-related protein; s 61.2 3.3 0.00011 38.7 1.9 17 290-306 35-51 (149)
287 1lv7_A FTSH; alpha/beta domain 61.1 3.4 0.00012 40.9 2.2 16 291-306 45-60 (257)
288 2r62_A Cell division protease 61.0 2.4 8.1E-05 42.2 1.0 16 291-306 44-59 (268)
289 1sxj_C Activator 1 40 kDa subu 60.8 6.1 0.00021 41.0 4.1 36 253-309 29-64 (340)
290 1ixz_A ATP-dependent metallopr 60.7 8 0.00027 38.2 4.8 13 41-53 51-63 (254)
291 1um8_A ATP-dependent CLP prote 60.6 3.5 0.00012 43.6 2.2 16 291-306 72-87 (376)
292 1kgd_A CASK, peripheral plasma 60.5 3.5 0.00012 39.1 2.0 17 290-306 4-20 (180)
293 1sxj_E Activator 1 40 kDa subu 60.5 3.7 0.00013 42.3 2.4 35 253-308 18-53 (354)
294 1sxj_A Activator 1 95 kDa subu 60.3 4.9 0.00017 44.9 3.4 15 40-54 78-92 (516)
295 1e9r_A Conjugal transfer prote 59.8 4.4 0.00015 43.6 2.9 18 291-308 53-70 (437)
296 1g41_A Heat shock protein HSLU 59.8 4.9 0.00017 44.9 3.3 15 40-54 51-65 (444)
297 3lw7_A Adenylate kinase relate 59.7 3.5 0.00012 37.2 1.8 15 292-306 2-16 (179)
298 3hu3_A Transitional endoplasmi 59.5 3.8 0.00013 46.0 2.4 18 290-307 237-254 (489)
299 2qmh_A HPR kinase/phosphorylas 59.5 4.2 0.00014 41.2 2.5 14 40-53 35-48 (205)
300 1sxj_B Activator 1 37 kDa subu 59.4 3.9 0.00013 41.2 2.2 16 292-307 43-58 (323)
301 3tr0_A Guanylate kinase, GMP k 59.4 3.8 0.00013 38.7 2.0 17 290-306 6-22 (205)
302 1jr3_A DNA polymerase III subu 59.2 4.1 0.00014 42.1 2.4 35 253-307 20-54 (373)
303 3tr0_A Guanylate kinase, GMP k 58.7 3.9 0.00013 38.7 2.0 17 37-53 5-21 (205)
304 3u61_B DNA polymerase accessor 58.7 7.4 0.00025 39.8 4.2 33 22-54 28-63 (324)
305 2bwj_A Adenylate kinase 5; pho 58.6 3.9 0.00013 38.4 2.0 24 30-53 3-26 (199)
306 3tau_A Guanylate kinase, GMP k 58.6 3.9 0.00013 39.7 2.0 17 290-306 7-23 (208)
307 2w0m_A SSO2452; RECA, SSPF, un 58.5 7.6 0.00026 36.8 4.0 21 287-307 19-39 (235)
308 1sxj_E Activator 1 40 kDa subu 58.5 3.5 0.00012 42.5 1.8 32 23-54 17-51 (354)
309 1xwi_A SKD1 protein; VPS4B, AA 58.3 3.8 0.00013 42.9 2.0 16 291-306 45-60 (322)
310 4b4t_M 26S protease regulatory 58.1 5.3 0.00018 44.4 3.2 16 291-306 215-230 (434)
311 3hu3_A Transitional endoplasmi 58.0 5.2 0.00018 44.8 3.2 16 39-54 238-253 (489)
312 1w5s_A Origin recognition comp 57.8 6.5 0.00022 41.1 3.7 36 19-54 24-67 (412)
313 1f9v_A Kinesin-like protein KA 57.6 7.2 0.00025 42.1 4.0 48 242-309 52-103 (347)
314 2j41_A Guanylate kinase; GMP, 57.3 4.3 0.00015 38.3 2.0 18 36-53 3-20 (207)
315 2eyu_A Twitching motility prot 57.2 4.1 0.00014 41.8 2.0 18 289-306 23-40 (261)
316 4akg_A Glutathione S-transfera 57.0 8.9 0.0003 51.6 5.5 39 19-57 903-941 (2695)
317 1kgd_A CASK, peripheral plasma 57.0 4.5 0.00015 38.3 2.1 16 38-53 4-19 (180)
318 2y65_A Kinesin, kinesin heavy 56.9 8.7 0.0003 41.8 4.6 52 238-308 47-102 (365)
319 4b4t_M 26S protease regulatory 56.8 4.2 0.00014 45.3 2.1 15 40-54 216-230 (434)
320 4b4t_K 26S protease regulatory 56.7 5.8 0.0002 44.0 3.2 16 291-306 206-221 (428)
321 1r6b_X CLPA protein; AAA+, N-t 56.7 6.7 0.00023 45.5 3.9 34 21-54 187-222 (758)
322 3tau_A Guanylate kinase, GMP k 56.2 4.6 0.00016 39.2 2.1 16 38-53 7-22 (208)
323 1kht_A Adenylate kinase; phosp 56.0 4.4 0.00015 37.5 1.9 16 291-306 3-18 (192)
324 2xzl_A ATP-dependent helicase 56.0 8.8 0.0003 45.7 4.8 19 291-309 375-393 (802)
325 2kjq_A DNAA-related protein; s 55.7 2.6 8.8E-05 39.4 0.2 16 38-53 35-50 (149)
326 2gno_A DNA polymerase III, gam 55.6 7.3 0.00025 40.8 3.6 31 24-54 1-33 (305)
327 1p9r_A General secretion pathw 55.5 6.3 0.00021 43.4 3.2 29 23-53 153-181 (418)
328 1c4o_A DNA nucleotide excision 55.5 8.1 0.00028 44.8 4.3 40 247-308 6-45 (664)
329 1uaa_A REP helicase, protein ( 55.5 9.7 0.00033 43.6 4.9 34 21-60 3-36 (673)
330 3e1s_A Exodeoxyribonuclease V, 55.4 13 0.00043 42.6 5.8 34 247-307 187-220 (574)
331 3vfd_A Spastin; ATPase, microt 55.4 4.6 0.00016 43.1 2.1 16 291-306 148-163 (389)
332 4b4t_L 26S protease subunit RP 55.4 6.3 0.00021 43.9 3.2 16 291-306 215-230 (437)
333 3iij_A Coilin-interacting nucl 55.4 4.8 0.00016 37.6 2.0 17 290-306 10-26 (180)
334 2zts_A Putative uncharacterize 55.1 9 0.00031 36.9 4.0 19 288-306 27-45 (251)
335 2b8t_A Thymidine kinase; deoxy 55.0 7.9 0.00027 39.1 3.7 28 290-317 11-38 (223)
336 2dr3_A UPF0273 protein PH0284; 55.0 8.2 0.00028 37.2 3.6 21 288-308 20-40 (247)
337 2qby_B CDC6 homolog 3, cell di 55.0 9.6 0.00033 39.4 4.4 17 291-307 45-61 (384)
338 2b8t_A Thymidine kinase; deoxy 54.9 7.6 0.00026 39.3 3.5 23 37-59 10-32 (223)
339 4b4t_J 26S protease regulatory 54.8 4.9 0.00017 44.5 2.2 15 40-54 183-197 (405)
340 1bg2_A Kinesin; motor protein, 54.6 10 0.00035 40.6 4.6 51 239-308 41-95 (325)
341 1iy2_A ATP-dependent metallopr 54.6 11 0.00038 38.0 4.6 13 41-53 75-87 (278)
342 2z4s_A Chromosomal replication 54.6 7.2 0.00025 42.7 3.5 14 40-53 131-144 (440)
343 4b4t_J 26S protease regulatory 54.5 5 0.00017 44.4 2.2 17 290-306 181-197 (405)
344 2wjy_A Regulator of nonsense t 54.2 8.4 0.00029 45.9 4.2 25 291-316 371-395 (800)
345 4b4t_L 26S protease subunit RP 54.0 4.9 0.00017 44.7 2.1 15 40-54 216-230 (437)
346 2qp9_X Vacuolar protein sortin 54.0 5 0.00017 42.6 2.0 16 291-306 84-99 (355)
347 3d8b_A Fidgetin-like protein 1 53.9 5.3 0.00018 42.3 2.3 16 291-306 117-132 (357)
348 3dc4_A Kinesin-like protein NO 53.7 9.8 0.00034 41.1 4.3 53 237-308 56-112 (344)
349 3u61_B DNA polymerase accessor 53.7 6.8 0.00023 40.1 2.9 36 253-308 30-65 (324)
350 3lw7_A Adenylate kinase relate 53.6 5.2 0.00018 36.0 1.8 13 41-53 3-15 (179)
351 4b4t_K 26S protease regulatory 53.5 5.1 0.00017 44.5 2.1 15 40-54 207-221 (428)
352 2rep_A Kinesin-like protein KI 53.4 8.3 0.00028 42.1 3.7 46 243-308 84-133 (376)
353 1fnn_A CDC6P, cell division co 52.8 12 0.00043 38.5 4.8 15 293-307 46-60 (389)
354 2fna_A Conserved hypothetical 52.8 4.7 0.00016 40.9 1.5 30 19-53 15-44 (357)
355 4etp_A Kinesin-like protein KA 52.7 8.1 0.00028 42.5 3.5 47 243-309 109-159 (403)
356 2eyu_A Twitching motility prot 52.7 4.6 0.00016 41.4 1.5 18 36-53 22-39 (261)
357 3trf_A Shikimate kinase, SK; a 52.6 5.5 0.00019 37.1 1.9 16 291-306 5-20 (185)
358 2fna_A Conserved hypothetical 52.6 11 0.00039 38.0 4.4 15 292-306 31-45 (357)
359 2qor_A Guanylate kinase; phosp 52.4 5.7 0.0002 38.2 2.0 17 290-306 11-27 (204)
360 3kb2_A SPBC2 prophage-derived 52.4 5.4 0.00018 36.3 1.8 14 293-306 3-16 (173)
361 3pvs_A Replication-associated 52.2 5.1 0.00017 44.3 1.8 16 292-307 51-66 (447)
362 1qvr_A CLPB protein; coiled co 52.0 7.1 0.00024 46.3 3.2 36 18-53 168-205 (854)
363 3a8t_A Adenylate isopentenyltr 51.9 5.2 0.00018 43.3 1.8 16 291-306 40-55 (339)
364 3vaa_A Shikimate kinase, SK; s 51.8 6 0.00021 37.8 2.1 19 35-53 21-39 (199)
365 2cvh_A DNA repair and recombin 51.7 9.7 0.00033 36.1 3.5 21 287-307 16-36 (220)
366 3t0q_A AGR253WP; kinesin, alph 51.7 8.6 0.00029 41.5 3.5 47 243-309 54-104 (349)
367 3lnc_A Guanylate kinase, GMP k 51.5 5.3 0.00018 39.1 1.7 18 289-306 25-42 (231)
368 3vaa_A Shikimate kinase, SK; s 51.5 5.9 0.0002 37.9 2.0 17 290-306 24-40 (199)
369 4akg_A Glutathione S-transfera 51.2 9.7 0.00033 51.2 4.5 43 12-54 618-660 (2695)
370 1ixz_A ATP-dependent metallopr 50.9 6.6 0.00023 38.8 2.3 14 293-306 51-64 (254)
371 2gza_A Type IV secretion syste 50.5 8.4 0.00029 41.2 3.1 18 289-306 173-190 (361)
372 1lvg_A Guanylate kinase, GMP k 50.4 6.5 0.00022 38.0 2.1 16 38-53 3-18 (198)
373 3exa_A TRNA delta(2)-isopenten 50.2 5.5 0.00019 42.9 1.7 16 291-306 3-18 (322)
374 3trf_A Shikimate kinase, SK; a 50.2 6.7 0.00023 36.6 2.1 15 39-53 5-19 (185)
375 2ce7_A Cell division protein F 50.1 13 0.00043 41.8 4.6 15 40-54 50-64 (476)
376 3b85_A Phosphate starvation-in 50.0 6.5 0.00022 38.9 2.0 21 288-308 19-39 (208)
377 4b4t_H 26S protease regulatory 50.0 8.5 0.00029 43.4 3.2 17 290-306 242-258 (467)
378 1z6g_A Guanylate kinase; struc 49.9 7.1 0.00024 38.4 2.3 20 34-53 18-37 (218)
379 2ehv_A Hypothetical protein PH 49.9 9.2 0.00032 37.0 3.1 23 287-309 26-48 (251)
380 3vkg_A Dynein heavy chain, cyt 49.8 18 0.00061 49.6 6.5 40 18-57 885-924 (3245)
381 1zp6_A Hypothetical protein AT 49.5 5.6 0.00019 37.2 1.4 18 289-306 7-24 (191)
382 3vkg_A Dynein heavy chain, cyt 49.5 12 0.00042 51.1 5.0 35 20-54 1285-1319(3245)
383 4gp7_A Metallophosphoesterase; 49.4 6.1 0.00021 37.2 1.7 19 289-307 7-25 (171)
384 2v54_A DTMP kinase, thymidylat 49.4 6.9 0.00024 36.9 2.0 16 291-306 4-19 (204)
385 1in4_A RUVB, holliday junction 49.2 6.9 0.00023 40.9 2.2 16 292-307 52-67 (334)
386 1ry6_A Internal kinesin; kines 49.2 11 0.00036 41.0 3.7 48 242-308 50-102 (360)
387 1sxj_A Activator 1 95 kDa subu 48.7 11 0.00037 42.1 3.7 17 292-308 78-94 (516)
388 2zan_A Vacuolar protein sortin 48.6 6.7 0.00023 43.0 2.1 16 291-306 167-182 (444)
389 1znw_A Guanylate kinase, GMP k 48.5 7.3 0.00025 37.6 2.1 19 35-53 16-34 (207)
390 3ney_A 55 kDa erythrocyte memb 48.5 7 0.00024 38.9 2.0 17 290-306 18-34 (197)
391 2ehv_A Hypothetical protein PH 48.5 6 0.0002 38.3 1.5 20 35-54 26-45 (251)
392 3a8t_A Adenylate isopentenyltr 48.2 6.6 0.00022 42.5 1.9 14 40-53 41-54 (339)
393 4b4t_I 26S protease regulatory 48.1 10 0.00035 42.5 3.4 16 291-306 216-231 (437)
394 1u0j_A DNA replication protein 48.0 17 0.00058 38.0 4.9 16 41-56 106-121 (267)
395 3k1j_A LON protease, ATP-depen 47.8 11 0.00038 42.9 3.8 18 291-308 60-77 (604)
396 1u0j_A DNA replication protein 47.7 13 0.00046 38.8 4.1 18 292-309 105-122 (267)
397 3b85_A Phosphate starvation-in 47.6 9.6 0.00033 37.7 2.8 22 32-53 15-36 (208)
398 2rhm_A Putative kinase; P-loop 47.6 6.3 0.00022 36.7 1.4 16 291-306 5-20 (193)
399 1kht_A Adenylate kinase; phosp 47.5 7.7 0.00026 35.9 2.0 15 39-53 3-17 (192)
400 4b4t_H 26S protease regulatory 47.5 6.4 0.00022 44.4 1.7 16 39-54 243-258 (467)
401 2jaq_A Deoxyguanosine kinase; 47.5 7 0.00024 36.6 1.8 14 293-306 2-15 (205)
402 1z6g_A Guanylate kinase; struc 47.5 7.5 0.00026 38.2 2.0 18 289-306 21-38 (218)
403 1tev_A UMP-CMP kinase; ploop, 47.4 6.7 0.00023 36.3 1.6 16 291-306 3-18 (196)
404 3cm0_A Adenylate kinase; ATP-b 47.3 6.4 0.00022 36.6 1.4 16 291-306 4-19 (186)
405 3f9v_A Minichromosome maintena 47.2 7.1 0.00024 44.7 2.1 14 293-306 329-342 (595)
406 3ney_A 55 kDa erythrocyte memb 47.2 7.7 0.00026 38.6 2.1 16 38-53 18-33 (197)
407 2plr_A DTMP kinase, probable t 47.2 7 0.00024 36.8 1.7 16 291-306 4-19 (213)
408 2h58_A Kinesin-like protein KI 46.9 7.5 0.00026 41.7 2.1 46 243-308 49-98 (330)
409 3a00_A Guanylate kinase, GMP k 46.8 7.6 0.00026 36.8 1.9 15 292-306 2-16 (186)
410 3kb2_A SPBC2 prophage-derived 46.7 7.6 0.00026 35.3 1.8 13 41-53 3-15 (173)
411 1pjr_A PCRA; DNA repair, DNA r 46.6 15 0.00053 42.7 4.7 33 21-59 12-44 (724)
412 1tue_A Replication protein E1; 46.5 15 0.00053 37.3 4.2 17 292-308 59-75 (212)
413 1n0w_A DNA repair protein RAD5 46.5 11 0.00039 36.2 3.1 23 288-310 21-43 (243)
414 1ly1_A Polynucleotide kinase; 46.5 7.3 0.00025 35.7 1.7 15 292-306 3-17 (181)
415 3lnc_A Guanylate kinase, GMP k 46.4 6 0.0002 38.7 1.1 18 36-53 24-41 (231)
416 1m7g_A Adenylylsulfate kinase; 46.4 9.7 0.00033 36.7 2.6 18 289-306 23-40 (211)
417 4b4t_I 26S protease regulatory 46.4 7.6 0.00026 43.5 2.0 15 40-54 217-231 (437)
418 1zak_A Adenylate kinase; ATP:A 46.2 7.6 0.00026 37.6 1.8 16 291-306 5-20 (222)
419 1lvg_A Guanylate kinase, GMP k 46.1 7.6 0.00026 37.5 1.8 16 291-306 4-19 (198)
420 1nks_A Adenylate kinase; therm 45.6 6.5 0.00022 36.4 1.2 14 293-306 3-16 (194)
421 2ewv_A Twitching motility prot 45.6 7.4 0.00025 41.9 1.8 17 290-306 135-151 (372)
422 2qby_A CDC6 homolog 1, cell di 45.5 7.6 0.00026 39.8 1.8 17 291-307 45-61 (386)
423 1qhx_A CPT, protein (chloramph 45.4 8.8 0.0003 35.4 2.0 16 291-306 3-18 (178)
424 2qor_A Guanylate kinase; phosp 45.4 7.9 0.00027 37.2 1.8 18 36-53 9-26 (204)
425 2vp4_A Deoxynucleoside kinase; 45.4 7.8 0.00027 38.2 1.8 17 290-306 19-35 (230)
426 2wwf_A Thymidilate kinase, put 45.3 6.9 0.00023 37.1 1.3 17 290-306 9-25 (212)
427 3jvv_A Twitching mobility prot 45.1 11 0.00036 40.7 2.9 17 37-53 121-137 (356)
428 3exa_A TRNA delta(2)-isopenten 45.0 7.9 0.00027 41.7 1.8 14 40-53 4-17 (322)
429 1nlf_A Regulatory protein REPA 44.9 11 0.00037 38.1 2.8 25 286-310 25-49 (279)
430 1zp6_A Hypothetical protein AT 44.9 5.9 0.0002 37.0 0.8 18 36-53 6-23 (191)
431 3a00_A Guanylate kinase, GMP k 44.7 9.5 0.00032 36.1 2.2 14 40-53 2-15 (186)
432 3iij_A Coilin-interacting nucl 44.7 9.8 0.00034 35.4 2.3 16 38-53 10-25 (180)
433 1uaa_A REP helicase, protein ( 44.7 17 0.00058 41.6 4.6 27 291-317 15-41 (673)
434 2x8a_A Nuclear valosin-contain 44.6 9.4 0.00032 39.1 2.3 14 293-306 46-59 (274)
435 2c95_A Adenylate kinase 1; tra 44.5 9.5 0.00033 35.6 2.1 16 291-306 9-24 (196)
436 1znw_A Guanylate kinase, GMP k 44.5 8.9 0.0003 37.0 2.0 19 288-306 17-35 (207)
437 1ny5_A Transcriptional regulat 44.5 17 0.00057 39.1 4.3 29 27-55 148-176 (387)
438 3jvv_A Twitching mobility prot 44.5 7.9 0.00027 41.7 1.8 17 291-307 123-139 (356)
439 1zd8_A GTP:AMP phosphotransfer 44.3 7.9 0.00027 37.7 1.6 16 291-306 7-22 (227)
440 1goj_A Kinesin, kinesin heavy 44.1 17 0.00057 39.4 4.2 48 242-308 47-98 (355)
441 4gp7_A Metallophosphoesterase; 44.0 6.6 0.00023 36.9 1.0 17 37-53 7-23 (171)
442 2w0m_A SSO2452; RECA, SSPF, un 44.0 15 0.00051 34.8 3.5 19 35-53 19-37 (235)
443 1tue_A Replication protein E1; 44.0 16 0.00056 37.2 3.9 14 41-54 60-73 (212)
444 4a74_A DNA repair and recombin 43.8 11 0.00038 35.9 2.5 23 287-309 21-43 (231)
445 3lre_A Kinesin-like protein KI 43.8 14 0.00049 39.9 3.7 48 242-308 72-123 (355)
446 1x88_A Kinesin-like protein KI 43.8 15 0.0005 39.9 3.8 47 243-308 56-106 (359)
447 1xx6_A Thymidine kinase; NESG, 43.7 12 0.00043 36.6 2.9 27 290-316 7-33 (191)
448 3foz_A TRNA delta(2)-isopenten 43.3 8.7 0.0003 41.3 1.8 13 41-53 12-24 (316)
449 2x8a_A Nuclear valosin-contain 43.3 9.5 0.00032 39.1 2.1 14 40-53 45-58 (274)
450 2jaq_A Deoxyguanosine kinase; 43.2 9.3 0.00032 35.7 1.8 13 41-53 2-14 (205)
451 2zts_A Putative uncharacterize 43.1 11 0.00039 36.2 2.5 18 36-53 27-44 (251)
452 2bwj_A Adenylate kinase 5; pho 43.0 8.7 0.0003 35.9 1.6 16 291-306 12-27 (199)
453 1iy2_A ATP-dependent metallopr 42.8 9 0.00031 38.6 1.8 14 293-306 75-88 (278)
454 1zak_A Adenylate kinase; ATP:A 42.8 9.5 0.00033 36.9 1.9 16 38-53 4-19 (222)
455 1kag_A SKI, shikimate kinase I 42.7 9.7 0.00033 34.9 1.9 16 291-306 4-19 (173)
456 4eun_A Thermoresistant glucoki 42.7 9.8 0.00033 36.4 2.0 17 290-306 28-44 (200)
457 1nn5_A Similar to deoxythymidy 42.7 9.3 0.00032 36.2 1.8 16 291-306 9-24 (215)
458 2ius_A DNA translocase FTSK; n 42.5 16 0.00056 41.4 4.0 23 291-313 167-189 (512)
459 2dhr_A FTSH; AAA+ protein, hex 42.4 25 0.00084 39.7 5.4 14 41-54 66-79 (499)
460 2z0h_A DTMP kinase, thymidylat 42.4 9.2 0.00032 35.7 1.7 14 293-306 2-15 (197)
461 3foz_A TRNA delta(2)-isopenten 42.4 8.5 0.00029 41.4 1.6 16 291-306 10-25 (316)
462 1ex7_A Guanylate kinase; subst 42.4 11 0.00037 37.1 2.2 14 40-53 2-15 (186)
463 2dr3_A UPF0273 protein PH0284; 42.2 15 0.00052 35.3 3.2 19 36-54 20-38 (247)
464 2v54_A DTMP kinase, thymidylat 42.2 11 0.00036 35.6 2.1 16 38-53 3-18 (204)
465 2pt7_A CAG-ALFA; ATPase, prote 42.2 7.6 0.00026 41.1 1.2 17 290-306 170-186 (330)
466 3lfu_A DNA helicase II; SF1 he 42.1 18 0.00061 40.7 4.2 26 291-317 22-47 (647)
467 2wbe_C Bipolar kinesin KRP-130 42.1 16 0.00055 39.8 3.7 49 242-308 67-118 (373)
468 1knq_A Gluconate kinase; ALFA/ 42.1 9.6 0.00033 35.2 1.7 16 291-306 8-23 (175)
469 1ly1_A Polynucleotide kinase; 42.0 10 0.00034 34.7 1.8 13 41-53 4-16 (181)
470 1t5c_A CENP-E protein, centrom 42.0 13 0.00046 40.1 3.1 48 242-308 44-95 (349)
471 2ze6_A Isopentenyl transferase 41.9 8.6 0.0003 38.8 1.5 14 293-306 3-16 (253)
472 3bfn_A Kinesin-like protein KI 41.7 15 0.00052 40.4 3.5 47 243-308 66-116 (388)
473 2c95_A Adenylate kinase 1; tra 41.7 13 0.00046 34.6 2.7 17 37-53 7-23 (196)
474 3u06_A Protein claret segregat 41.6 10 0.00035 41.9 2.2 47 242-308 106-156 (412)
475 4a14_A Kinesin, kinesin-like p 41.6 18 0.00062 38.9 4.0 48 242-308 50-101 (344)
476 2pez_A Bifunctional 3'-phospho 41.4 9.8 0.00033 35.5 1.7 17 290-306 4-20 (179)
477 3b6u_A Kinesin-like protein KI 41.4 17 0.00057 39.8 3.7 48 242-308 68-119 (372)
478 2oap_1 GSPE-2, type II secreti 41.3 9.9 0.00034 42.9 2.0 18 290-307 259-276 (511)
479 2ewv_A Twitching motility prot 41.2 8.3 0.00028 41.5 1.3 18 36-53 133-150 (372)
480 1p5z_B DCK, deoxycytidine kina 41.2 9.8 0.00034 38.1 1.8 16 291-306 24-39 (263)
481 1cr0_A DNA primase/helicase; R 41.1 17 0.00057 36.9 3.5 23 288-310 32-54 (296)
482 1zd8_A GTP:AMP phosphotransfer 41.1 9.9 0.00034 37.0 1.7 16 38-53 6-21 (227)
483 3bh0_A DNAB-like replicative h 41.0 19 0.00064 37.5 3.9 24 286-309 63-86 (315)
484 1nks_A Adenylate kinase; therm 41.0 9.6 0.00033 35.2 1.6 13 41-53 3-15 (194)
485 1g41_A Heat shock protein HSLU 41.0 11 0.00036 42.2 2.1 16 291-306 50-65 (444)
486 2gno_A DNA polymerase III, gam 40.9 15 0.0005 38.5 3.1 35 253-308 1-35 (305)
487 2yvu_A Probable adenylyl-sulfa 40.8 10 0.00035 35.5 1.8 17 290-306 12-28 (186)
488 1ex7_A Guanylate kinase; subst 40.8 11 0.00036 37.1 1.9 15 292-306 2-16 (186)
489 3c8u_A Fructokinase; YP_612366 40.8 6.2 0.00021 38.1 0.2 27 27-53 6-36 (208)
490 2z0h_A DTMP kinase, thymidylat 40.2 11 0.00038 35.1 1.9 12 42-53 3-14 (197)
491 2vvg_A Kinesin-2; motor protei 40.2 15 0.00053 39.6 3.2 48 242-308 56-107 (350)
492 2orw_A Thymidine kinase; TMTK, 40.2 19 0.00066 34.6 3.6 24 291-314 3-26 (184)
493 1aky_A Adenylate kinase; ATP:A 40.2 11 0.00039 36.3 2.0 16 291-306 4-19 (220)
494 2vp4_A Deoxynucleoside kinase; 40.0 12 0.00042 36.7 2.2 15 39-53 20-34 (230)
495 1f2t_A RAD50 ABC-ATPase; DNA d 40.0 17 0.00059 33.7 3.2 23 41-65 25-47 (149)
496 2ze6_A Isopentenyl transferase 39.9 11 0.00037 38.0 1.8 13 41-53 3-15 (253)
497 3cm0_A Adenylate kinase; ATP-b 39.7 9.1 0.00031 35.6 1.2 15 39-53 4-18 (186)
498 1kag_A SKI, shikimate kinase I 39.3 13 0.00045 34.0 2.2 15 39-53 4-18 (173)
499 3tlx_A Adenylate kinase 2; str 39.3 16 0.00053 36.5 2.9 15 39-53 29-43 (243)
500 2cvh_A DNA repair and recombin 39.3 12 0.0004 35.5 1.9 20 35-54 16-35 (220)
No 1
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.97 E-value=7.6e-32 Score=308.55 Aligned_cols=101 Identities=19% Similarity=0.138 Sum_probs=82.0
Q ss_pred eEeecCc---------cccceEEEEecCCCCCCCccccccc-----ccCCcccc-hHHHHHHHHHhccCccccccCceeE
Q psy3462 580 KQVMGKG---------NLELCKGVFWTRFPNTCQYSVVYPT-----GLLKGGDW-YQIQAYRALNQALGRCIRHRYDWGA 644 (795)
Q Consensus 580 fAV~GGK---------nl~rcViVVGIPYPn~~d~~Lk~~~-----~~~~G~ew-Y~~~AmRaVNQAIGRvIRHknDyGa 644 (795)
|||+||+ +.++||||+|||||++ |+.++... ...+|+.| |..+||++|+||+||+|||++|||+
T Consensus 499 ~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~ 577 (620)
T 4a15_A 499 FAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGA 577 (620)
T ss_dssp EEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEE
T ss_pred EEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEE
Confidence 8999996 6899999999999999 68776321 12233444 8899999999999999999999999
Q ss_pred EEEeecccCChhhhhhHhHHHHhhccccCChhHHHHHHHHHHHHHHH
Q psy3462 645 ILLVDQRFYSKNSQQGLSKWVRNQVQNTSSHNTFMENLRNFVRRRME 691 (795)
Q Consensus 645 IiLlD~Rf~~~~~~~~LP~WIr~~l~~~~sfe~~~~~l~~Ffk~~k~ 691 (795)
|+|+|+|| +++++.||. ++.... ..+.+.+||...+.
T Consensus 578 v~llD~R~--~~~~~~LP~-~~~~~~-------~~~~~~~f~~~~~~ 614 (620)
T 4a15_A 578 CVILDKRA--GQFRKFIPD-MKKTSD-------PASDIYNFFISAQA 614 (620)
T ss_dssp EEEECGGG--GGGGGGSTT-CEEESC-------HHHHHHHHHHHHHT
T ss_pred EEEEccch--HHHHHhCCc-hhhhcC-------cHHHHHHHHhChhh
Confidence 99999999 889999999 655433 34678899987743
No 2
>3iz5_g 60S ribosomal protein L31 (L31E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_g 2go5_6 2j37_6
Probab=99.96 E-value=2.1e-30 Score=241.64 Aligned_cols=83 Identities=48% Similarity=0.720 Sum_probs=77.4
Q ss_pred CCCCCCCCCcccceeEEEEecCccccccCCCCcchHHHHHHHHHHHhhhCCCCeEeCccchHHHHhcCCCCCCCceEEEe
Q psy3462 112 KPATKKKPLNEVVTRDYTIHMHKRLHKVGFKKRAPRAIKVVRAFVKKQMGTEDVRIDTRLNKHIWSKGINNHTLGTAYFD 191 (795)
Q Consensus 112 ~~k~~~s~~~e~vtreyTInL~K~v~g~~fkkRAprAik~IrkFa~K~mkt~dVrID~~LNk~IWsrGirnpP~rirV~~ 191 (795)
+.+++.+++.|+|||||||||||++||++|+||||+|+++||+||+|||||+||+||++||++||++||+|||++|||+.
T Consensus 4 ~~~~~~~~~~evvtreyTInlhK~ihgv~fkKRAprAlKeIrkFa~K~Mgt~dVrID~~LNkaVWakGirnvP~rIRVrl 83 (123)
T 3iz5_g 4 KKRGAGTRKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGIRSVPRRVRVRI 83 (123)
T ss_dssp CCCSCSSCCCSCCEEEEEEECHHHHHHSCTTTCHHHHHHHHHHHHHHHHTCSCBCCCHHHHHHHHTTCSSCCCSEEEEEE
T ss_pred cccCCCccccCceeeEEEEeCchhcccCCCcccCHHHHHHHHHHHHHHcCCCceEECcHHHHHHHHccccCCCceEEEEE
Confidence 33344478899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q psy3462 192 SAA 194 (795)
Q Consensus 192 s~~ 194 (795)
+..
T Consensus 84 sRk 86 (123)
T 3iz5_g 84 SRK 86 (123)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
No 3
>3u5e_d L34, YL28, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_M 2ww9_M 3izc_g 3izs_g 2wwb_M 3o5h_a 3o58_a 3u5i_d 4b6a_d 1s1i_W 3jyw_W
Probab=99.96 E-value=2.4e-30 Score=238.55 Aligned_cols=78 Identities=47% Similarity=0.776 Sum_probs=73.5
Q ss_pred CCCCcccceeEEEEecCccccccCCCCcchHHHHHHHHHHHhhhCCCCeEeCccchHHHHhcCCCCCCCceEEEeccc
Q psy3462 117 KKPLNEVVTRDYTIHMHKRLHKVGFKKRAPRAIKVVRAFVKKQMGTEDVRIDTRLNKHIWSKGINNHTLGTAYFDSAA 194 (795)
Q Consensus 117 ~s~~~e~vtreyTInL~K~v~g~~fkkRAprAik~IrkFa~K~mkt~dVrID~~LNk~IWsrGirnpP~rirV~~s~~ 194 (795)
+|+++|++||||||||||++||++|+||||+|+++||+||+|||||+||+||++||++||++||+|||++|||+.+..
T Consensus 1 ~sa~~evvtreyTInlhK~ihgv~fkKrAprAlkeIrkFa~K~Mgt~dV~ID~~LNk~vWakGirnvP~rIrVrlsRk 78 (113)
T 3u5e_d 1 MAGLKDVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVKGVEYRLRLRISRK 78 (113)
T ss_dssp ---CCCCEEEEEEEEHHHHHTTCCTTTHHHHHHHHHHHHHHHHHCCSCEEECHHHHHHHHTTCTTCCCSEEEEEEEEE
T ss_pred CCcccCceeeEEEEeCcceeccCCCcccCHHHHHHHHHHHHHHcCCCceEECcHHHHHHHhccccCCCceEEEEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999998765
No 4
>2zkr_x 60S ribosomal protein L31; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.96 E-value=4.4e-30 Score=240.43 Aligned_cols=81 Identities=57% Similarity=0.874 Sum_probs=68.6
Q ss_pred CCCCCCCcccceeEEEEecCccccccCCCCcchHHHHHHHHHHHhhhCCCCeEeCccchHHHHhcCCCCCCCceEEEecc
Q psy3462 114 ATKKKPLNEVVTRDYTIHMHKRLHKVGFKKRAPRAIKVVRAFVKKQMGTEDVRIDTRLNKHIWSKGINNHTLGTAYFDSA 193 (795)
Q Consensus 114 k~~~s~~~e~vtreyTInL~K~v~g~~fkkRAprAik~IrkFa~K~mkt~dVrID~~LNk~IWsrGirnpP~rirV~~s~ 193 (795)
++++|++++++||||||||||++|+++|+||||+||++||+||+|||||+||+||++||++||++||+|||++|||+.+.
T Consensus 11 ~~~~s~~~evvtreyTInL~K~ihgv~fkKRAprAik~IrkFa~K~Mgt~dVrID~~LNk~IWskGirnvP~rIRVrlsR 90 (125)
T 2zkr_x 11 KKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSR 90 (125)
T ss_dssp -----------CEEEEEECHHHHSSBSSSBHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHTTCSSCCCSEEEEEEEE
T ss_pred cCCCcccccceeeEEEeccccccccCCCCccCHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHhccCCCCCceEEEEEEE
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q psy3462 194 A 194 (795)
Q Consensus 194 ~ 194 (795)
.
T Consensus 91 k 91 (125)
T 2zkr_x 91 K 91 (125)
T ss_dssp E
T ss_pred e
Confidence 5
No 5
>3j21_a 50S ribosomal protein L31E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.96 E-value=1.4e-29 Score=227.23 Aligned_cols=76 Identities=29% Similarity=0.420 Sum_probs=72.7
Q ss_pred CcccceeEEEEecCccccccCCCCcchHHHHHHHHHHHhhhCCCCeEeCccchHHHHhcCCCCCCCceEEEecccc
Q psy3462 120 LNEVVTRDYTIHMHKRLHKVGFKKRAPRAIKVVRAFVKKQMGTEDVRIDTRLNKHIWSKGINNHTLGTAYFDSAAK 195 (795)
Q Consensus 120 ~~e~vtreyTInL~K~v~g~~fkkRAprAik~IrkFa~K~mkt~dVrID~~LNk~IWsrGirnpP~rirV~~s~~~ 195 (795)
++|++||||||||||++||++|+||||+|+++||+||+|||||+||+|||+||++||++||+|||++|+|+.+...
T Consensus 3 ~~e~vtreyTInlhK~~hgv~fkKrAprAlkeIrkFa~K~mgt~dV~ID~~LNk~vWakGirnvP~rIrVrlsRk~ 78 (95)
T 3j21_a 3 IKAGEEVIFTVPIKKIKKIVPRWKRAPRAVKFVREFVARHAKAQEVIIDPKVNEKIWERGIEKPPSKLRVKVKVEE 78 (95)
T ss_dssp -CCSSCEEEEEECTTHHHHBCSGGGHHHHHHHHHHHHHHHHTCSSCEECHHHHHHHHTTCSSCCCSEEEEEEEEEC
T ss_pred CCCCceEEEEEEChheecCCCccccCHHHHHHHHHHHHHhcCCCcEEEChHHHHHHHhccccCCCCeEEEEEEEec
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999987653
No 6
>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_W 4a1c_W 4a1e_W
Probab=99.95 E-value=3.5e-29 Score=230.19 Aligned_cols=74 Identities=49% Similarity=0.700 Sum_probs=71.7
Q ss_pred cccceeEEEEecCccccccCCCCcchHHHHHHHHHHHhhhCCCCeEeCccchHHHHhcCCCCCCCceEEEeccc
Q psy3462 121 NEVVTRDYTIHMHKRLHKVGFKKRAPRAIKVVRAFVKKQMGTEDVRIDTRLNKHIWSKGINNHTLGTAYFDSAA 194 (795)
Q Consensus 121 ~e~vtreyTInL~K~v~g~~fkkRAprAik~IrkFa~K~mkt~dVrID~~LNk~IWsrGirnpP~rirV~~s~~ 194 (795)
.|++||||||||||++||++|+||||+|+++||+||+|||||+||+||++||++||++||+|||++|||+.+..
T Consensus 4 ~~vvtreyTInlhK~ihgv~fkKrAprAlkeIrkFa~K~Mgt~dV~ID~~LNk~vWakGirnvP~rIrVrlsRk 77 (111)
T 4a17_W 4 QEEKSIDTTVNLHKQCHKISFKKKAPRAIREIVAIAKKTMGTDDVRIDTELNKFIWSNGIRNIPRRVRVRLCKR 77 (111)
T ss_dssp CCCCEEEEEEEHHHHTTTCCGGGHHHHHHHHHHHHHHHHHCCSCEEECHHHHHHHHTTCSSSCCSEEEEEEEEE
T ss_pred CcceEEEEEEECeeeeecCCccccCHHHHHHHHHHHHHHcCCCceEECcHHHHHHHhccccCCCcEEEEEEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999998765
No 7
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Probab=99.95 E-value=1.1e-28 Score=220.66 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=67.5
Q ss_pred CcccceeEEEEecCccccccCCCCcchHHHHHHHHHHHhhhCCC--CeEeCccchHHHHhcCCCCCCCceEEEeccc
Q psy3462 120 LNEVVTRDYTIHMHKRLHKVGFKKRAPRAIKVVRAFVKKQMGTE--DVRIDTRLNKHIWSKGINNHTLGTAYFDSAA 194 (795)
Q Consensus 120 ~~e~vtreyTInL~K~v~g~~fkkRAprAik~IrkFa~K~mkt~--dVrID~~LNk~IWsrGirnpP~rirV~~s~~ 194 (795)
+++++|||||||||| +||++|+||||+|+++||+||+|||||+ ||+|||+||++||++||+|||++|||+.+..
T Consensus 3 ~~~~vtreyTInl~k-i~~~~~kkRAprAik~Irkfa~k~m~t~~~dVriD~~LNk~iW~rGir~vP~rIRVr~sR~ 78 (92)
T 1vq8_X 3 ASDFEERVVTIPLRD-ARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARF 78 (92)
T ss_dssp -----CEEEEEECGG-GGGSCGGGHHHHHHHHHHHHHHHHTTCCGGGEEECHHHHHHHTTTCSSCCCSEEEEEEEEE
T ss_pred cccceeEEEEEEhHH-hcCCCccccCHHHHHHHHHHHHHHhCCCcccEEECcHHHHHHHhcccCCCCceEEEEEEEE
Confidence 468899999999999 9999999999999999999999999999 9999999999999999999999999998764
No 8
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.91 E-value=5e-24 Score=239.52 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=85.0
Q ss_pred cCcEEEcCCCcchhhHHhhhcc---cce-eEeecCc-----c-------ccceEEEEecCCCCCCCcccccc----cccC
Q psy3462 555 KRNIFYDTLMLCDVQTKETKHR---DSV-KQVMGKG-----N-------LELCKGVFWTRFPNTCQYSVVYP----TGLL 614 (795)
Q Consensus 555 ~K~IFiE~kd~~e~~~~L~~Y~---~ai-fAV~GGK-----n-------l~rcViVVGIPYPn~~d~~Lk~~----~~~~ 614 (795)
.++||+|+++++ ..++++.|+ .+| |||+||+ + ..+||||+|||||++ |+.++.. +...
T Consensus 414 ~~~v~~q~~~~~-~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~ 491 (551)
T 3crv_A 414 SLPKYVESEDSS-VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKM 491 (551)
T ss_dssp CSSEEECCSSCC-HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCS
T ss_pred CCcEEEcCCCCC-HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhh
Confidence 589999999753 456677773 344 9999996 2 358999999999999 9988732 2121
Q ss_pred Ccccc---hHHHHHHHHHhccCccccccCceeEEEEeecccCChhhhhhHhHHHHhhcccc
Q psy3462 615 KGGDW---YQIQAYRALNQALGRCIRHRYDWGAILLVDQRFYSKNSQQGLSKWVRNQVQNT 672 (795)
Q Consensus 615 ~G~ew---Y~~~AmRaVNQAIGRvIRHknDyGaIiLlD~Rf~~~~~~~~LP~WIr~~l~~~ 672 (795)
.+++| |..+||++|+||+||+|||++|||+|+|+|+||.. +|+...+.+.
T Consensus 492 g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~~~--------~~~~~~~~~~ 544 (551)
T 3crv_A 492 NRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRFES--------LYWKKNLKCL 544 (551)
T ss_dssp STTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGGGGS--------HHHHHHTTCT
T ss_pred CCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehhccc--------chhhhhceeC
Confidence 22356 88999999999999999999999999999999976 5777766543
No 9
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.88 E-value=1.8e-23 Score=234.84 Aligned_cols=106 Identities=16% Similarity=0.092 Sum_probs=80.4
Q ss_pred cCcEEEcCCCcchhhHHhhhcc--cce-eEeecCc--------c---ccceEEEEecCCCCCCCccccccc-----ccCC
Q psy3462 555 KRNIFYDTLMLCDVQTKETKHR--DSV-KQVMGKG--------N---LELCKGVFWTRFPNTCQYSVVYPT-----GLLK 615 (795)
Q Consensus 555 ~K~IFiE~kd~~e~~~~L~~Y~--~ai-fAV~GGK--------n---l~rcViVVGIPYPn~~d~~Lk~~~-----~~~~ 615 (795)
.+++|+|+++ .+.+.++++|+ .+| |||+||+ + +.+||||+|+|||++.|+.++... ...+
T Consensus 406 ~~~~~~q~~~-~~~~~~l~~f~~~~~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~ 484 (540)
T 2vl7_A 406 GIPVIEENKK-TRHEEVLELMKTGKYLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGK 484 (540)
T ss_dssp TSCEEESTTT-CCHHHHHHHHHTSCCEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTC
T ss_pred cCceEecCCC-CcHHHHHHHHhcCCeEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCC
Confidence 3789999886 56777888884 344 8999986 2 589999999999999999887321 1122
Q ss_pred cc-cchHHHHHHHHHhccCccccccCceeEEEEeecccCChhhhhhH
Q psy3462 616 GG-DWYQIQAYRALNQALGRCIRHRYDWGAILLVDQRFYSKNSQQGL 661 (795)
Q Consensus 616 G~-ewY~~~AmRaVNQAIGRvIRHknDyGaIiLlD~Rf~~~~~~~~L 661 (795)
+. ++....+|++++||+||+|||++|||+|+|+|+||...+|...|
T Consensus 485 ~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R~~~~~yg~~l 531 (540)
T 2vl7_A 485 DEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSRYREYFADLGI 531 (540)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGGGGGGTTTTTC
T ss_pred ChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccccCcchhhccc
Confidence 22 23344559999999999999999999999999999998877666
No 10
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.24 E-value=5.1e-12 Score=145.09 Aligned_cols=64 Identities=25% Similarity=0.215 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCceeEEeccccccc
Q psy3462 19 FLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELVQQKMFEQRTQDLQKTSFVFCGRSDFFL 98 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~~~~vq~~~~~~~~~~~~~~~~~yc~rth~~l 98 (795)
|.|||+|.+||++|++++.+++++++|||||||||+|||+|++.++.. .+++++||+|||.+.
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-----------------~~~kvli~t~T~~l~ 64 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-----------------RKLKVLYLVRTNSQE 64 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-----------------HTCEEEEEESSHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-----------------cCCeEEEECCCHHHH
Confidence 789999999999999999999999999999999999999999999753 136899999999865
Q ss_pred c
Q psy3462 99 L 99 (795)
Q Consensus 99 ~ 99 (795)
.
T Consensus 65 ~ 65 (620)
T 4a15_A 65 E 65 (620)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.02 E-value=2.9e-10 Score=127.98 Aligned_cols=61 Identities=30% Similarity=0.263 Sum_probs=55.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCceeEEecccccc
Q psy3462 18 YFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELVQQKMFEQRTQDLQKTSFVFCGRSDFF 97 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~~~~vq~~~~~~~~~~~~~~~~~yc~rth~~ 97 (795)
+|.|||.|.+||++|++++.++++++++||||||||+|||+|++. ..++++|+++||.+
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---------------------~~~~v~i~~pt~~l 59 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---------------------VKPKVLFVVRTHNE 59 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---------------------HCSEEEEEESSGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---------------------CCCeEEEEcCCHHH
Confidence 368999999999999999999999999999999999999999987 14789999999985
Q ss_pred cc
Q psy3462 98 LL 99 (795)
Q Consensus 98 l~ 99 (795)
..
T Consensus 60 ~~ 61 (551)
T 3crv_A 60 FY 61 (551)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 12
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.95 E-value=5.3e-10 Score=125.87 Aligned_cols=62 Identities=18% Similarity=0.073 Sum_probs=51.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCceeEEecccc
Q psy3462 16 PNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELVQQKMFEQRTQDLQKTSFVFCGRSD 95 (795)
Q Consensus 16 ~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~~~~vq~~~~~~~~~~~~~~~~~yc~rth 95 (795)
+++|.|||+|.+||.+|++++.++++++++||||||||+|||+|++.+ .++++|+++||
T Consensus 3 ~~~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------------------~~~~~~~~~t~ 61 (540)
T 2vl7_A 3 VLKLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------------------KKKVLIFTRTH 61 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------------------TCEEEEEESCH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------------------CCcEEEEcCCH
Confidence 456799999999999999999999999999999999999999998642 47999999999
Q ss_pred ccc
Q psy3462 96 FFL 98 (795)
Q Consensus 96 ~~l 98 (795)
.+.
T Consensus 62 ~l~ 64 (540)
T 2vl7_A 62 SQL 64 (540)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
No 13
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.39 E-value=4.5e-07 Score=89.14 Aligned_cols=47 Identities=17% Similarity=0.107 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHH
Q psy3462 16 PNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 66 (795)
Q Consensus 16 ~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~ 66 (795)
.++..|++.|. +++..+.+++++++.||||+|||++|++|++..+..
T Consensus 38 ~g~~~~~~~Q~----~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~ 84 (228)
T 3iuy_A 38 VGILKPTPIQS----QAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDS 84 (228)
T ss_dssp HTCCSCCHHHH----HHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-
T ss_pred CCCCCCCHHHH----HHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 36779999995 445566678999999999999999999999987653
No 14
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.36 E-value=7e-07 Score=89.08 Aligned_cols=51 Identities=18% Similarity=0.103 Sum_probs=40.7
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHH
Q psy3462 12 YLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 66 (795)
Q Consensus 12 ~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~ 66 (795)
.+...++..|++.|.+.+ .++.+++++++.||||+|||++|++|++..+..
T Consensus 43 ~l~~~g~~~~~~~Q~~~i----~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 43 VIARQNFTEPTAIQAQGW----PVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp HHHTTTCCSCCHHHHHHH----HHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCCHHHHHHH----HHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 344456778999995544 555578899999999999999999999987653
No 15
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.31 E-value=1.4e-06 Score=86.00 Aligned_cols=50 Identities=40% Similarity=0.397 Sum_probs=40.9
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHH
Q psy3462 13 LNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 66 (795)
Q Consensus 13 ~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~ 66 (795)
+...++..|++.|. +++.++.+++++++.||||+|||++|++|++..+..
T Consensus 40 l~~~~~~~~~~~Q~----~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 40 LQEAQYRLVTEIQK----QTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp HHHTTCCBCCHHHH----HHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHH----HHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 34457789999995 445556678999999999999999999999987754
No 16
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.28 E-value=1.3e-06 Score=84.01 Aligned_cols=50 Identities=16% Similarity=0.052 Sum_probs=39.9
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 11 TYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 11 ~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
+.+...++..|++.|.+.+ +++.+++++++.||||+|||++|++|++...
T Consensus 16 ~~l~~~g~~~~~~~Q~~~i----~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~ 65 (206)
T 1vec_A 16 MGIFEMGWEKPSPIQEESI----PIALSGRDILARAKNGTGKSGAYLIPLLERL 65 (206)
T ss_dssp HHHHTTTCCSCCHHHHHHH----HHHHTTCCEEEECCSSSTTHHHHHHHHHHHC
T ss_pred HHHHHCCCCCCCHHHHHHH----HHHccCCCEEEECCCCCchHHHHHHHHHHHh
Confidence 3444557779999995554 4555678999999999999999999988764
No 17
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.26 E-value=1.3e-06 Score=87.24 Aligned_cols=51 Identities=20% Similarity=0.131 Sum_probs=40.8
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHhh
Q psy3462 14 NEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEK 68 (795)
Q Consensus 14 ~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~~ 68 (795)
...++..|++.|.+.+ +++.+++++++.||||+|||++|++|++..+...+
T Consensus 39 ~~~g~~~~~~~Q~~~i----~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~ 89 (253)
T 1wrb_A 39 LLASYQRPTPIQKNAI----PAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQD 89 (253)
T ss_dssp TTTTCCSCCHHHHHHH----HHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCCCHHHHHHH----HHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhc
Confidence 3446778999995554 45556789999999999999999999998876543
No 18
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.25 E-value=1.3e-06 Score=86.70 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=38.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 15 EPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 15 ~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
..++..|++.|.+. +.++.+++++++.||||+|||++|++|++..+
T Consensus 46 ~~g~~~~~~~Q~~~----i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 46 DAGFQMPTPIQMQA----IPVMLHGRELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp HTTCCSCCHHHHHH----HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHH----HHHHhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 34677899999544 45566678999999999999999999998765
No 19
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.24 E-value=2e-06 Score=90.60 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=42.6
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHhh
Q psy3462 13 LNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEK 68 (795)
Q Consensus 13 ~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~~ 68 (795)
+...++..|+|.|.+ ++.++.+++++++.||||+|||++|++|++..+...+
T Consensus 30 l~~~~~~~~~~~Q~~----~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 30 IELTRYTRPTPVQKH----AIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp HHHHTCCSCCHHHHH----HHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCHHHHH----HHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 334577799999954 4556677899999999999999999999998876554
No 20
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.22 E-value=1.8e-06 Score=84.21 Aligned_cols=51 Identities=12% Similarity=0.076 Sum_probs=39.8
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 9 FKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 9 ~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
.+.+. ..++..|++.|.+.+ ..+.++.++++.||||+|||++|++|++.++
T Consensus 26 ~~~l~-~~g~~~~~~~Q~~~i----~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 26 LRGVF-GYGFEEPSAIQQRAI----MPIIEGHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp HHHHH-HHTCCSCCHHHHHHH----HHHHTTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred HHHHH-HCCCCCCcHHHHHHH----HHHhcCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 33443 346778999995544 4555678999999999999999999998775
No 21
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.21 E-value=1.3e-06 Score=85.55 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=39.7
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 12 YLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 12 ~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
.+...++..|++.|.+.+. ++.+++++++.||||+|||++|++|++..+
T Consensus 18 ~l~~~g~~~~~~~Q~~~i~----~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l 66 (219)
T 1q0u_A 18 AIKTLRFYKPTEIQERIIP----GALRGESMVGQSQTGTGKTHAYLLPIMEKI 66 (219)
T ss_dssp HHHHTTCCSCCHHHHHHHH----HHHHTCCEEEECCSSHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCCCHHHHHHHH----HHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 3344578899999965554 445678999999999999999999988775
No 22
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.20 E-value=2.1e-06 Score=82.43 Aligned_cols=50 Identities=18% Similarity=0.092 Sum_probs=40.1
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 12 YLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 12 ~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
.+...++..|++.|.+.+ +.+.+++++++.||||+|||++|++|++..+.
T Consensus 15 ~l~~~~~~~~~~~Q~~~i----~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~ 64 (207)
T 2gxq_A 15 ALHGRGLTTPTPIQAAAL----PLALEGKDLIGQARTGTGKTLAFALPIAERLA 64 (207)
T ss_dssp HHHHTTCCSCCHHHHHHH----HHHHTTCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred HHHHcCCCCCCHHHHHHH----HHHcCCCCEEEECCCCChHHHHHHHHHHHHHh
Confidence 334457779999995554 45556789999999999999999999887754
No 23
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.19 E-value=2.4e-06 Score=86.38 Aligned_cols=54 Identities=17% Similarity=0.036 Sum_probs=42.5
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHH
Q psy3462 9 FKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 66 (795)
Q Consensus 9 ~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~ 66 (795)
+.+.+...++..|++.|.+. +..+.+++++++.||||+|||++|++|++..+..
T Consensus 54 l~~~l~~~g~~~~~~~Q~~~----i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~ 107 (249)
T 3ber_A 54 LCEACDQLGWTKPTKIQIEA----IPLALQGRDIIGLAETGSGKTGAFALPILNALLE 107 (249)
T ss_dssp HHHHHHHTTCCSCCHHHHHH----HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHH----HHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhc
Confidence 33445556778999999554 4555677999999999999999999999877643
No 24
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.15 E-value=2.8e-06 Score=84.12 Aligned_cols=49 Identities=12% Similarity=0.007 Sum_probs=38.9
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 12 YLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 12 ~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
.+...++..|++.|.+.+ .++.+++++++.||||+|||++|++|++..+
T Consensus 38 ~l~~~g~~~~~~~Q~~~i----~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 38 GLRAAGFERPSPVQLKAI----PLGRCGLDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp HHHHTTCCSCCHHHHHHH----HHHHTTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred HHHHCCCCCCCHHHHHHH----HHHhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 334456667999995554 4566688999999999999999999988764
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.15 E-value=3.2e-06 Score=91.96 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=41.5
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHh
Q psy3462 14 NEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 67 (795)
Q Consensus 14 ~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~ 67 (795)
...++..|+|.| ..++..+.+++++++.||||+|||+||++|++..+...
T Consensus 72 ~~~g~~~pt~iQ----~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 72 NKSGYKIPTPIQ----KCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp HHTTCCSCCHHH----HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred HHcCCCCCCHHH----HHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 345777899999 45555667889999999999999999999999887654
No 26
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.15 E-value=4.3e-06 Score=85.11 Aligned_cols=48 Identities=23% Similarity=0.136 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHh
Q psy3462 16 PNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 67 (795)
Q Consensus 16 ~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~ 67 (795)
.++..|++.|.+++.. +..++++++.||||+|||++|++|++..+...
T Consensus 72 ~g~~~~~~~Q~~~i~~----~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~ 119 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRP----LLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL 119 (262)
T ss_dssp TTCCBCCHHHHHHHHH----HHHTCCCEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHH----HhCCCcEEEEccCCCCchHHHHHHHHHHHHhc
Confidence 4677799999655554 44568899999999999999999999877643
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.10 E-value=2.8e-06 Score=90.62 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=41.7
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 7 DIFKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
+.+.++.....+|.|+|.| .++++++.+++++++.||||+|||++|++|++..+
T Consensus 8 ~~~~~~l~~~~~~~~~~~Q----~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~ 61 (414)
T 3oiy_A 8 EDFRSFFKKKFGKDLTGYQ----RLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA 61 (414)
T ss_dssp HHHHHHHHHHHSSCCCHHH----HHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHH----HHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3444555555577999999 45555566778999999999999999999987654
No 28
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.08 E-value=5e-06 Score=81.05 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=39.8
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 7 DIFKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
...+.+.+ .++..|++.|.+.+ .++.++.++++.||||+|||++|++|++..+
T Consensus 24 ~l~~~l~~-~g~~~~~~~Q~~~i----~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~ 76 (220)
T 1t6n_A 24 ELLRAIVD-CGFEHPSEVQHECI----PQAILGMDVLCQAKSGMGKTAVFVLATLQQL 76 (220)
T ss_dssp HHHHHHHH-TTCCCCCHHHHHHH----HHHHTTCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHH-CCCCCCCHHHHHHH----HHHhCCCCEEEECCCCCchhhhhhHHHHHhh
Confidence 33444443 45667999995555 4455578899999999999999999988764
No 29
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.07 E-value=4.5e-06 Score=87.08 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=38.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 15 EPNYFLKYSSCKILHLQVIQGCNKA--KNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 15 ~~~~~~p~~~Q~~mm~~i~~al~~~--~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
..++..|+++| ..++.++..+ .++++.||||||||+||++|++..+
T Consensus 109 ~~g~~~pt~iQ----~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 109 AMGFNRPSKIQ----ENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp HTTCCSCCHHH----HHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred HcCCCCCCHHH----HHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 35788999999 5555666665 8999999999999999999998754
No 30
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.03 E-value=3.5e-06 Score=83.90 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=37.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 15 EPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 15 ~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
..++..|++.|.+.+ ..+.++.++++.||||+|||++|++|++..+
T Consensus 47 ~~g~~~~~~~Q~~ai----~~i~~~~~~li~apTGsGKT~~~~l~~l~~l 92 (237)
T 3bor_A 47 AYGFEKPSAIQQRAI----IPCIKGYDVIAQAQSGTGKTATFAISILQQL 92 (237)
T ss_dssp HHTCCSCCHHHHHHH----HHHHTTCCEEECCCSSHHHHHHHHHHHHHHC
T ss_pred HCCCCCCCHHHHHHH----HHHhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 346667999995544 4455678999999999999999999998764
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.00 E-value=1.1e-05 Score=90.74 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=42.1
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHh
Q psy3462 11 TYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 67 (795)
Q Consensus 11 ~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~ 67 (795)
+.+...++..|+|.|.+.+..+.. ..++++++.||||+|||+||++|++..+...
T Consensus 34 ~~l~~~g~~~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~ 88 (579)
T 3sqw_A 34 KAITRMEFPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINT 88 (579)
T ss_dssp HHHHTTTCSSCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhc
Confidence 334455777899999665554431 1567899999999999999999999887654
No 32
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.97 E-value=9.3e-06 Score=77.83 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=43.9
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHH
Q psy3462 7 DIFKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 66 (795)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~ 66 (795)
+.+.......+.+.|++.|.+.+..+. ++.++++.+|||+|||+++++|++..+..
T Consensus 20 ~~~~~~~~~~~~~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~ 75 (216)
T 3b6e_A 20 ENVAARASPEPELQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDK 75 (216)
T ss_dssp HHHHHHTCCSCCCCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCccCCCCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 344555566678899999976665544 56899999999999999999998877643
No 33
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.97 E-value=1.4e-05 Score=82.72 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 7 DIFKTYLNEPNYFLKYSSCKILHLQVIQGCNKA--KNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~--~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
...+.+.+ .++..|+|.|.+.+.. +.++ .++++.||||+|||++|++|++..+
T Consensus 15 ~l~~~l~~-~~~~~~~~~Q~~~i~~----~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~ 69 (395)
T 3pey_A 15 ELLKGIYA-MKFQKPSKIQERALPL----LLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV 69 (395)
T ss_dssp HHHHHHHH-TTCCSCCHHHHHHHHH----HHCSSCCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHH-CCCCCCCHHHHHHHHH----HHcCCCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 34444544 4778999999655544 4444 8999999999999999999988654
No 34
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.96 E-value=9.6e-06 Score=82.40 Aligned_cols=46 Identities=24% Similarity=0.180 Sum_probs=37.4
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHH
Q psy3462 13 LNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLA 62 (795)
Q Consensus 13 ~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~ 62 (795)
+...++..|+|.|.+.+ +.+.+++++++.||||+|||++|++|++.
T Consensus 9 l~~~g~~~l~~~Q~~~i----~~i~~~~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 9 IREMGFKNFTEVQSKTI----PLMLQGKNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp HHHTTCCSCCHHHHHHH----HHHHTTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHH----HHHhcCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 34457778999995544 55557889999999999999999999764
No 35
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.91 E-value=1.3e-05 Score=89.06 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=40.3
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHh
Q psy3462 14 NEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 67 (795)
Q Consensus 14 ~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~ 67 (795)
...++..|+|.|.+.+..+.. ..++++|+.||||+|||++|++|++..+...
T Consensus 88 ~~~g~~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~ 139 (563)
T 3i5x_A 88 TRMEFPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINT 139 (563)
T ss_dssp HTTCCSSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhc
Confidence 444777899999665554431 1467899999999999999999999887643
No 36
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.88 E-value=1.7e-05 Score=83.11 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 8 IFKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 8 ~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
..+.+. ..++..|+|.|.+.+..+... .+.++++.||||+|||++|++|++..+
T Consensus 36 l~~~l~-~~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 36 LLQGVY-AMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp HHHHHH-HTTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred HHHHHH-HcCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHh
Confidence 334444 357789999995555444321 248999999999999999999988653
No 37
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.87 E-value=2e-05 Score=82.83 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 7 DIFKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
...+.+.. .++..|+|.|.+.+.. +.+++++++.||||+|||++|++|++..+
T Consensus 31 ~l~~~l~~-~g~~~~~~~Q~~~i~~----i~~~~~~li~a~TGsGKT~~~~~~~~~~~ 83 (400)
T 1s2m_A 31 ELLMGIFE-AGFEKPSPIQEEAIPV----AITGRDILARAKNGTGKTAAFVIPTLEKV 83 (400)
T ss_dssp HHHHHHHH-TTCCSCCHHHHHHHHH----HHHTCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHH-CCCCCCCHHHHHHHHH----HhcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 33444444 3666799999665554 44678899999999999999999988764
No 38
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.85 E-value=1.6e-05 Score=82.82 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=37.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 15 EPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 15 ~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
..++..|+|.|.+.+ +.+..+.++++.||||+|||++|++|++..+
T Consensus 25 ~~g~~~~~~~Q~~~i----~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l 70 (391)
T 1xti_A 25 DCGFEHPSEVQHECI----PQAILGMDVLCQAKSGMGKTAVFVLATLQQL 70 (391)
T ss_dssp HHSCCSCCHHHHHHH----HHHTTTCCEEEECSSCSSHHHHHHHHHHHHC
T ss_pred HCCCCCCCHHHHHHH----HHHhcCCcEEEECCCCCcHHHHHHHHHHHhh
Confidence 346667999995544 5555678999999999999999999988664
No 39
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.82 E-value=1.8e-05 Score=83.51 Aligned_cols=45 Identities=20% Similarity=0.179 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 16 PNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 16 ~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
.++..|+|.|.+.+ +.+.+++++++.||||+|||++|++|++..+
T Consensus 55 ~g~~~~~~~Q~~ai----~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l 99 (410)
T 2j0s_A 55 YGFEKPSAIQQRAI----KQIIKGRDVIAQSQSGTGKTATFSISVLQCL 99 (410)
T ss_dssp HTCCSCCHHHHHHH----HHHHTTCCEEEECCTTSSHHHHHHHHHHHTC
T ss_pred cCCCCCCHHHHHHH----HHHhCCCCEEEECCCCCCchHHHHHHHHHHH
Confidence 36667999995554 4455678999999999999999999988754
No 40
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.81 E-value=1.9e-05 Score=90.30 Aligned_cols=52 Identities=21% Similarity=0.109 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHH
Q psy3462 7 DIFKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLA 62 (795)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~ 62 (795)
...+.+.+..++..|+|.|.+. ++++.+++++++.+|||+|||++|++|++.
T Consensus 31 ~l~~~L~~~fg~~~~rp~Q~~~----i~~il~g~d~lv~~pTGsGKTl~~~lpal~ 82 (591)
T 2v1x_A 31 KVKDILQNVFKLEKFRPLQLET----INVTMAGKEVFLVMPTGGGKSLCYQLPALC 82 (591)
T ss_dssp HHHHHHHHTSCCCSCCTTHHHH----HHHHHTTCCEEEECCTTSCTTHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCHHHHHH----HHHHHcCCCEEEEECCCChHHHHHHHHHHH
Confidence 3444445545677899999554 455556889999999999999999999874
No 41
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.81 E-value=2.2e-05 Score=82.52 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=40.1
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 8 IFKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 8 ~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
..+.+. ..++..|++.|.+.+ .++.+++++++.||||+|||++|++|++..+
T Consensus 51 ~~~~l~-~~~~~~~~~~Q~~~i----~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~ 102 (414)
T 3eiq_A 51 LLRGIY-AYGFEKPSAIQQRAI----LPCIKGYDVIAQAQSGTGKTATFAISILQQI 102 (414)
T ss_dssp HHHHHH-HTTCCSCCHHHHHHH----HHHHTTCCEEECCCSCSSSHHHHHHHHHHHC
T ss_pred HHHHHH-HcCCCCCCHHHHHHh----HHHhCCCCEEEECCCCCcccHHHHHHHHHHH
Confidence 333443 357778999995554 5555688999999999999999999988654
No 42
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.80 E-value=1.4e-05 Score=83.22 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=40.6
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 7 DIFKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
...+.+.. .++..|+|.|.+.+. .+.++.++++.||||+|||++|++|++..+
T Consensus 31 ~l~~~l~~-~g~~~~~~~Q~~~i~----~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l 83 (394)
T 1fuu_A 31 NLLRGVFG-YGFEEPSAIQQRAIM----PIIEGHDVLAQAQSGTGKTGTFSIAALQRI 83 (394)
T ss_dssp HHHHHHHH-HTCCSCCHHHHHHHH----HHHHTCCEEECCCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-cCCCCCCHHHHHHHH----HHhCCCCEEEECCCCChHHHHHHHHHHHHh
Confidence 34444444 467799999955544 455578999999999999999999998764
No 43
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.78 E-value=2.2e-05 Score=80.48 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=38.0
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 13 LNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 13 ~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
+...++..|+|.|.+.+..+. .++.++++.||||+|||++|++|++..+
T Consensus 21 l~~~g~~~~~~~Q~~~i~~~~---~~~~~~l~~~~TGsGKT~~~~~~~~~~~ 69 (367)
T 1hv8_A 21 IRNKGFEKPTDIQMKVIPLFL---NDEYNIVAQARTGSGKTASFAIPLIELV 69 (367)
T ss_dssp HHHHTCCSCCHHHHHHHHHHH---HTCSEEEEECCSSSSHHHHHHHHHHHHS
T ss_pred HHHcCCCCCCHHHHHHHHHHh---CCCCCEEEECCCCChHHHHHHHHHHHHh
Confidence 344577789999966554442 3447999999999999999999988654
No 44
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.77 E-value=2.8e-05 Score=84.73 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEECCCCCchHHHHHHHHHHH
Q psy3462 7 DIFKTYLNEPNYFLKYSSCKILHLQVIQGCNKA--KNCLLESPTGSGKTLALLCSVLAW 63 (795)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~--~~~llEAPTGTGKTLAyL~paL~~ 63 (795)
...+.+.. .++..|+|+|.+. +..+..+ .++++.||||+|||++|++|++..
T Consensus 102 ~l~~~l~~-~g~~~p~~~Q~~a----i~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~ 155 (479)
T 3fmp_B 102 QLLQGVYA-MGFNRPSKIQENA----LPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (479)
T ss_dssp HHHHHHHH-TTCCSCCHHHHHH----HHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTT
T ss_pred HHHHHHHH-cCCCCCCHHHHHH----HHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHH
Confidence 34444444 5788999999544 4555444 899999999999999999998754
No 45
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.76 E-value=2.8e-05 Score=77.44 Aligned_cols=46 Identities=20% Similarity=0.122 Sum_probs=37.9
Q ss_pred cCCC-CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHH
Q psy3462 246 FPVK-AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 318 (795)
Q Consensus 246 fpy~-~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~ 318 (795)
+.|+ |+|.|.+.+..+.+ ++++++.||||+|||++|++|++..+..
T Consensus 47 ~g~~~~~~~Q~~~i~~~~~---------------------------g~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 47 QNFTEPTAIQAQGWPVALS---------------------------GLDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp TTCCSCCHHHHHHHHHHHH---------------------------TCCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHhC---------------------------CCCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 5665 89999998877542 4689999999999999999999877643
No 46
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.76 E-value=2.6e-05 Score=83.14 Aligned_cols=76 Identities=26% Similarity=0.296 Sum_probs=52.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHhhH---
Q psy3462 245 EFPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKE--- 321 (795)
Q Consensus 245 ~fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~~k--- 321 (795)
.|+|+|+|.|.+.+..+. +++++++.||||+|||++|+.+++..+....+
T Consensus 17 ~~~~~~~~~Q~~~i~~i~---------------------------~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~li 69 (414)
T 3oiy_A 17 KFGKDLTGYQRLWAKRIV---------------------------QGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSAL 69 (414)
T ss_dssp HHSSCCCHHHHHHHHHHT---------------------------TTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred hcCCCCCHHHHHHHHHHh---------------------------cCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 478999999998887753 24689999999999999999998876644332
Q ss_pred -----HHHHHHHhhhhhhhhhcCCCCceEEEeccc
Q psy3462 322 -----LVQQKMFEQRTQDLQKIPFRKLKISRLKAK 351 (795)
Q Consensus 322 -----~LQ~Ql~~kdip~l~~i~~~~l~~~~~KGr 351 (795)
.|-.|..+. +.+.....+++..+-|.
T Consensus 70 l~Pt~~L~~q~~~~----~~~~~~~~~~v~~~~g~ 100 (414)
T 3oiy_A 70 VFPTVTLVKQTLER----LQKLADEKVKIFGFYSS 100 (414)
T ss_dssp EESSHHHHHHHHHH----HHHHCCSSCCEEECCTT
T ss_pred EECCHHHHHHHHHH----HHHHccCCceEEEEECC
Confidence 566665543 22222234555555554
No 47
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.72 E-value=3e-05 Score=76.08 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=36.9
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 318 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~ 318 (795)
+.| +|+|.|.+.+..+. +++++++.||||+|||++|++|++..+..
T Consensus 38 ~g~~~~~~~Q~~~i~~~~---------------------------~~~~~l~~apTGsGKT~~~~l~~~~~l~~ 84 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIIL---------------------------QGIDLIVVAQTGTGKTLSYLMPGFIHLDS 84 (228)
T ss_dssp HTCCSCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSCHHHHHHHHHHHHHC-
T ss_pred CCCCCCCHHHHHHHHHHh---------------------------CCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 455 68999998886653 25689999999999999999998877643
No 48
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.71 E-value=3.5e-05 Score=73.99 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=36.3
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 316 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~ 316 (795)
+.| +|+|.|.+.+..+. +++++++.||||+|||++|++|++..+
T Consensus 21 ~g~~~~~~~Q~~~i~~~~---------------------------~~~~~lv~apTGsGKT~~~~~~~~~~~ 65 (206)
T 1vec_A 21 MGWEKPSPIQEESIPIAL---------------------------SGRDILARAKNGTGKSGAYLIPLLERL 65 (206)
T ss_dssp TTCCSCCHHHHHHHHHHH---------------------------TTCCEEEECCSSSTTHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHc---------------------------cCCCEEEECCCCCchHHHHHHHHHHHh
Confidence 566 58999999887753 246799999999999999999987654
No 49
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.70 E-value=2.6e-05 Score=87.59 Aligned_cols=52 Identities=21% Similarity=0.322 Sum_probs=40.0
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHH
Q psy3462 7 DIFKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLA 62 (795)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~ 62 (795)
...+.+.+..++..|+|.|. ++++++.+++++++.||||+|||++|++|++.
T Consensus 12 ~~~~~l~~~~g~~~~r~~Q~----~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~ 63 (523)
T 1oyw_A 12 GAKQVLQETFGYQQFRPGQE----EIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL 63 (523)
T ss_dssp HHHHHHHHTTCCSSCCTTHH----HHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHH----HHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 34444555456678999995 45555567889999999999999999999873
No 50
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.70 E-value=5.7e-05 Score=75.41 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=37.7
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 318 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~ 318 (795)
+.| +|+|.|.+.+..+.+ ++++++.||||+|||++|++|++..+..
T Consensus 41 ~g~~~~~~~Q~~~i~~i~~---------------------------~~~~l~~a~TGsGKT~~~~~~~l~~l~~ 87 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAILE---------------------------HRDIMACAQTGSGKTAAFLIPIINHLVC 87 (253)
T ss_dssp TTCCSCCHHHHHHHHHHHT---------------------------TCCEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHhC---------------------------CCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 345 589999998887532 4679999999999999999999887654
No 51
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.70 E-value=3.7e-05 Score=76.23 Aligned_cols=45 Identities=29% Similarity=0.409 Sum_probs=36.6
Q ss_pred cCCC-CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 246 FPVK-AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 246 fpy~-~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
..|. |+|.|.+.+..+. +++++++.||||+|||++|++|++..+.
T Consensus 47 ~g~~~~~~~Q~~~i~~~~---------------------------~~~~~l~~a~TGsGKT~~~~l~~l~~l~ 92 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVML---------------------------HGRELLASAPTGSGKTLAFSIPILMQLK 92 (245)
T ss_dssp TTCCSCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHh---------------------------CCCCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4564 8999999887753 2467999999999999999999887653
No 52
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.69 E-value=3.4e-05 Score=84.22 Aligned_cols=46 Identities=26% Similarity=0.138 Sum_probs=34.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 16 PNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 16 ~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
++.+.|+|.|.+.+. .+.++.++++.||||+|||++|++|++..+.
T Consensus 3 ~~~~~~~~~Q~~~i~----~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~ 48 (556)
T 4a2p_A 3 METKKARSYQIELAQ----PAINGKNALICAPTGSGKTFVSILICEHHFQ 48 (556)
T ss_dssp -----CCHHHHHHHH----HHHTTCCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH----HHHcCCCEEEEcCCCChHHHHHHHHHHHHHH
Confidence 467899999965544 4456789999999999999999999887654
No 53
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.68 E-value=4.3e-05 Score=83.07 Aligned_cols=45 Identities=29% Similarity=0.273 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHH
Q psy3462 18 YFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 66 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~ 66 (795)
.+.|+|.|.+.+. .+.++.++++.||||+|||++|++|++..+..
T Consensus 2 ~~~~~~~Q~~~i~----~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~ 46 (555)
T 3tbk_A 2 PLKPRNYQLELAL----PAKKGKNTIICAPTGCGKTFVSLLICEHHLKK 46 (555)
T ss_dssp CCCCCHHHHHHHH----HHHTTCCEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHH----HHhCCCCEEEEeCCCChHHHHHHHHHHHHHHh
Confidence 4789999965555 44567899999999999999999999877643
No 54
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.64 E-value=6.7e-05 Score=75.72 Aligned_cols=47 Identities=23% Similarity=0.192 Sum_probs=38.2
Q ss_pred ccCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHH
Q psy3462 245 EFPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 318 (795)
Q Consensus 245 ~fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~ 318 (795)
.+.| +|+|.|.+.+..+. +++++++.||||+|||++|++|++..+..
T Consensus 60 ~~g~~~~~~~Q~~~i~~i~---------------------------~~~~~lv~a~TGsGKT~~~~~~il~~l~~ 107 (249)
T 3ber_A 60 QLGWTKPTKIQIEAIPLAL---------------------------QGRDIIGLAETGSGKTGAFALPILNALLE 107 (249)
T ss_dssp HTTCCSCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHh---------------------------CCCCEEEEcCCCCCchhHhHHHHHHHHhc
Confidence 3566 68999998887753 24679999999999999999999876654
No 55
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.61 E-value=4.3e-05 Score=74.44 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=36.8
Q ss_pred ccCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHH
Q psy3462 245 EFPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 316 (795)
Q Consensus 245 ~fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~ 316 (795)
.++| +++|.|.+.+..+. +++++++.||||+|||++|++|++.++
T Consensus 31 ~~g~~~~~~~Q~~~i~~~~---------------------------~~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 31 GYGFEEPSAIQQRAIMPII---------------------------EGHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp HHTCCSCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred HCCCCCCcHHHHHHHHHHh---------------------------cCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 3566 58999998887753 246799999999999999999988765
No 56
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.59 E-value=6.5e-05 Score=73.16 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=36.4
Q ss_pred cCCC-CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHH
Q psy3462 246 FPVK-AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 316 (795)
Q Consensus 246 fpy~-~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~ 316 (795)
+.|+ |+|.|.+.+..+.+ ++++++.||||+|||++|++|++..+
T Consensus 32 ~g~~~~~~~Q~~~i~~~~~---------------------------~~~~li~~~TGsGKT~~~~~~~~~~~ 76 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAIL---------------------------GMDVLCQAKSGMGKTAVFVLATLQQL 76 (220)
T ss_dssp TTCCCCCHHHHHHHHHHHT---------------------------TCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHhC---------------------------CCCEEEECCCCCchhhhhhHHHHHhh
Confidence 5675 99999998877642 45799999999999999999987654
No 57
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.57 E-value=7e-05 Score=85.18 Aligned_cols=49 Identities=29% Similarity=0.226 Sum_probs=37.9
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 13 LNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 13 ~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
+...+++.||+.|.+.+. .+..+.++|+.+|||+|||++|++|++..+.
T Consensus 6 l~~~g~~~lr~~Q~~~i~----~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~ 54 (696)
T 2ykg_A 6 TNLYSPFKPRNYQLELAL----PAMKGKNTIICAPTGCGKTFVSLLICEHHLK 54 (696)
T ss_dssp -CTTC--CCCHHHHHHHH----HHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccccCCCCccHHHHHHHH----HHHcCCCEEEEcCCCchHHHHHHHHHHHHHH
Confidence 445678899999955554 4556789999999999999999999987654
No 58
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.56 E-value=7.7e-05 Score=75.85 Aligned_cols=46 Identities=26% Similarity=0.297 Sum_probs=37.9
Q ss_pred cCCC-CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHH
Q psy3462 246 FPVK-AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 318 (795)
Q Consensus 246 fpy~-~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~ 318 (795)
+.|+ |+|.|.+++..+.+ ++++++.||||+|||++|++|++..+..
T Consensus 72 ~g~~~~~~~Q~~~i~~~~~---------------------------~~~~lv~a~TGsGKT~~~~l~~l~~l~~ 118 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLLE---------------------------GRDLLAAAKTGSGKTLAFLIPAVELIVK 118 (262)
T ss_dssp TTCCBCCHHHHHHHHHHHH---------------------------TCCCEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC---------------------------CCcEEEEccCCCCchHHHHHHHHHHHHh
Confidence 5665 89999998877642 4678999999999999999999877654
No 59
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.56 E-value=7.6e-05 Score=73.77 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=36.5
Q ss_pred ccCCC-CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHH
Q psy3462 245 EFPVK-AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 316 (795)
Q Consensus 245 ~fpy~-~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~ 316 (795)
.+.|+ |+|.|.+.+..+. +++++++.||||+|||++|++|++..+
T Consensus 41 ~~g~~~~~~~Q~~~i~~~~---------------------------~~~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 41 AAGFERPSPVQLKAIPLGR---------------------------CGLDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp HTTCCSCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred HCCCCCCCHHHHHHHHHHh---------------------------CCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 35665 8999998887653 246799999999999999999987654
No 60
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.55 E-value=0.00016 Score=69.21 Aligned_cols=47 Identities=26% Similarity=0.293 Sum_probs=38.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHh
Q psy3462 246 FPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 319 (795)
Q Consensus 246 fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~ 319 (795)
..+++||.|.+.+..+.+ ++++++.+|||+|||++++.+++..+...
T Consensus 30 ~~~~l~~~Q~~~i~~~~~---------------------------~~~~li~~~tGsGKT~~~~~~~~~~~~~~ 76 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALE---------------------------GKNIIICLPTGSGKTRVAVYIAKDHLDKK 76 (216)
T ss_dssp CCCCCCHHHHHHHHHHHT---------------------------TCCEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHhc---------------------------CCCEEEEcCCCCCHHHHHHHHHHHHHhhc
Confidence 447899999999887641 36799999999999999999988776543
No 61
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.53 E-value=8e-05 Score=71.34 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=36.7
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
+.| +|+|.|.+.+..+. +++++++.||||||||++|++|++..+.
T Consensus 19 ~~~~~~~~~Q~~~i~~~~---------------------------~~~~~li~~~TGsGKT~~~~~~~~~~l~ 64 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLAL---------------------------EGKDLIGQARTGTGKTLAFALPIAERLA 64 (207)
T ss_dssp TTCCSCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred cCCCCCCHHHHHHHHHHc---------------------------CCCCEEEECCCCChHHHHHHHHHHHHHh
Confidence 455 68999999887753 2467999999999999999999877653
No 62
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.53 E-value=8.5e-05 Score=73.24 Aligned_cols=46 Identities=30% Similarity=0.268 Sum_probs=37.0
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 318 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~ 318 (795)
+.| .|+|.|.+.+..+. +++++++.||||+|||++|++|++..+..
T Consensus 43 ~~~~~~~~~Q~~~i~~~~---------------------------~~~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLAL---------------------------QGKDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp TTCCBCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh---------------------------CCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 455 58999988877653 25689999999999999999999877643
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.52 E-value=6.3e-05 Score=73.52 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=36.3
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 316 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~ 316 (795)
+.| +|+|.|.+.+..+.+ ++++++.||||+|||++|++|++..+
T Consensus 22 ~g~~~~~~~Q~~~i~~~~~---------------------------~~~~lv~a~TGsGKT~~~~~~~l~~l 66 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGALR---------------------------GESMVGQSQTGTGKTHAYLLPIMEKI 66 (219)
T ss_dssp TTCCSCCHHHHHHHHHHHH---------------------------TCCEEEECCSSHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHhC---------------------------CCCEEEECCCCChHHHHHHHHHHHHH
Confidence 444 689999999877642 46799999999999999999987665
No 64
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.50 E-value=0.00017 Score=78.32 Aligned_cols=46 Identities=30% Similarity=0.384 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHh
Q psy3462 247 PVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 319 (795)
Q Consensus 247 py~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~ 319 (795)
||+|||.|.+.+..+. .++++++.+|||+|||++|++|++..+...
T Consensus 2 ~~~~~~~Q~~~i~~~~---------------------------~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~ 47 (555)
T 3tbk_A 2 PLKPRNYQLELALPAK---------------------------KGKNTIICAPTGCGKTFVSLLICEHHLKKF 47 (555)
T ss_dssp CCCCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCcHHHHHHHHHHh---------------------------CCCCEEEEeCCCChHHHHHHHHHHHHHHhc
Confidence 6899999999988763 246799999999999999999998887753
No 65
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.49 E-value=0.00012 Score=86.54 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=49.7
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 7 DIFKTYLNEPNYFLKYSSCKILHLQVIQGCNKA--KNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~--~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
...+++.+..++ .|++.|.+.+.++.+.+..+ .++++.||||+|||++|++|++..+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~ 415 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE 415 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 566777777666 99999999999999988776 48999999999999999999987753
No 66
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.47 E-value=6.5e-05 Score=74.75 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=36.7
Q ss_pred ccCCC-CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHH
Q psy3462 245 EFPVK-AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 316 (795)
Q Consensus 245 ~fpy~-~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~ 316 (795)
.+.|. |+|.|.+.+..+. +++++++.||||||||++|++|++..+
T Consensus 47 ~~g~~~~~~~Q~~ai~~i~---------------------------~~~~~li~apTGsGKT~~~~l~~l~~l 92 (237)
T 3bor_A 47 AYGFEKPSAIQQRAIIPCI---------------------------KGYDVIAQAQSGTGKTATFAISILQQL 92 (237)
T ss_dssp HHTCCSCCHHHHHHHHHHH---------------------------TTCCEEECCCSSHHHHHHHHHHHHHHC
T ss_pred HCCCCCCCHHHHHHHHHHh---------------------------CCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 35675 9999998887753 246799999999999999999987654
No 67
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.45 E-value=0.00016 Score=81.26 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=40.9
Q ss_pred ccCCC-CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHh
Q psy3462 245 EFPVK-AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 319 (795)
Q Consensus 245 ~fpy~-~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~ 319 (795)
.++|+ |+|.|.+.+..+.. . .++++++.||||||||++|++|++..+...
T Consensus 38 ~~g~~~~~~~Q~~~i~~il~---~----------------------~~~dvlv~apTGsGKTl~~~lpil~~l~~~ 88 (579)
T 3sqw_A 38 RMEFPGLTPVQQKTIKPILS---S----------------------EDHDVIARAKTGTGKTFAFLIPIFQHLINT 88 (579)
T ss_dssp TTTCSSCCHHHHHHHHHHHC---S----------------------SSEEEEEECCTTSCHHHHHHHHHHHHHHHT
T ss_pred HCCCCCCCHHHHHHHHHHHc---c----------------------CCCeEEEEcCCCcHHHHHHHHHHHHHHHhc
Confidence 46775 99999998877641 1 257899999999999999999999887654
No 68
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.45 E-value=0.00011 Score=77.30 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=38.3
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHh
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 319 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~ 319 (795)
..| +|+|.|.+.+..+. .++++++.||||+|||++|++|++..+...
T Consensus 33 ~~~~~~~~~Q~~~i~~i~---------------------------~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~ 80 (417)
T 2i4i_A 33 TRYTRPTPVQKHAIPIIK---------------------------EKRDLMACAQTGSGKTAAFLLPILSQIYSD 80 (417)
T ss_dssp HTCCSCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHc---------------------------cCCCEEEEcCCCCHHHHHHHHHHHHHHHhc
Confidence 455 68999999887643 257899999999999999999998877543
No 69
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.44 E-value=0.00018 Score=79.97 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=41.0
Q ss_pred ccCCC-CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHhh
Q psy3462 245 EFPVK-AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEK 320 (795)
Q Consensus 245 ~fpy~-~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~~ 320 (795)
.++|. ++|.|.+.+..+. .. .++++++.||||||||++|++|++..+...+
T Consensus 89 ~~g~~~~~~~Q~~~i~~~l---~~----------------------~~~~~lv~apTGsGKTl~~~lpil~~l~~~~ 140 (563)
T 3i5x_A 89 RMEFPGLTPVQQKTIKPIL---SS----------------------EDHDVIARAKTGTGKTFAFLIPIFQHLINTK 140 (563)
T ss_dssp TTCCSSCCHHHHHHHHHHH---SS----------------------SSEEEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCCCHHHHHHHHHHh---cC----------------------CCCeEEEECCCCCCccHHHHHHHHHHHHhcc
Confidence 35664 8999999887764 11 2578999999999999999999998887653
No 70
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=97.44 E-value=0.00012 Score=83.25 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHh
Q psy3462 17 NYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 67 (795)
Q Consensus 17 ~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~ 67 (795)
..+.|+|.|.+.+.. +.++.++|+.+|||+|||++|++|++..+...
T Consensus 4 ~~~~l~~~Q~~~i~~----il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~ 50 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQP----ALEGKNIIICLPTGCGKTRVAVYIAKDHLDKK 50 (699)
T ss_dssp ---CCCHHHHHHHHH----HHSSCCEEECCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHH----HHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhc
Confidence 467899999555544 44578999999999999999999999887654
No 71
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.41 E-value=0.00025 Score=81.69 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=42.7
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 8 IFKTYLNEPNYFLKYSSCKILHLQVIQG-CNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 8 ~~~~~~~~~~~~~p~~~Q~~mm~~i~~a-l~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
.+.+.....++..|+|.|.+.+ ++ +.+++++++.||||+|||++|.+|++..+.
T Consensus 18 ~~~~~l~~~g~~~l~~~Q~~~i----~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~ 72 (715)
T 2va8_A 18 NVIEIIKKRGIKKLNPPQTEAV----KKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLL 72 (715)
T ss_dssp HHHHHHHTTSCCBCCHHHHHHH----HTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHH----HHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 4455566666669999995444 44 567899999999999999999999987654
No 72
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.38 E-value=0.00019 Score=83.04 Aligned_cols=54 Identities=26% Similarity=0.241 Sum_probs=41.9
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 8 IFKTYLNEPNYFLKYSSCKILHLQVIQG-CNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 8 ~~~~~~~~~~~~~p~~~Q~~mm~~i~~a-l~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
.+.+.+...++..|+|.|.+ ++++ +.+++++++.||||+|||++|++|++....
T Consensus 11 ~~~~~l~~~g~~~l~~~Q~~----~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~ 65 (720)
T 2zj8_A 11 RIKSTLKERGIESFYPPQAE----ALKSGILEGKNALISIPTASGKTLIAEIAMVHRIL 65 (720)
T ss_dssp HHHHHHHHTTCCBCCHHHHH----HHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHH----HHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHH
Confidence 34445555566689999954 4444 667899999999999999999999987654
No 73
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=97.37 E-value=0.00013 Score=84.17 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=41.0
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 8 IFKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 8 ~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
.+.+.+...++..|+|.|. ++++++.+++++++.||||+|||+++++|++..+.
T Consensus 13 ~~~~~l~~~g~~~l~~~Q~----~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~ 66 (702)
T 2p6r_A 13 YAVGILKEEGIEELFPPQA----EAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI 66 (702)
T ss_dssp HHHHHHHCC---CCCCCCH----HHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHH----HHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH
Confidence 4455666666668999994 45555667899999999999999999999987654
No 74
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.31 E-value=0.00042 Score=82.07 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=59.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHhhH---
Q psy3462 245 EFPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKE--- 321 (795)
Q Consensus 245 ~fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~~k--- 321 (795)
.+||+++|.|.+.+..|.+.+..+ ...++++.||||+|||++|+.|++..+....+
T Consensus 364 ~lpf~lt~~Q~~ai~~I~~~l~~~---------------------~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlv 422 (780)
T 1gm5_A 364 SLPFKLTNAQKRAHQEIRNDMISE---------------------KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAF 422 (780)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHHSS---------------------SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEE
T ss_pred hCCCCCCHHHHHHHHHHHhhcccc---------------------CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 689999999999999998877542 13579999999999999999999988765533
Q ss_pred -----HHHHHHHhhhhhhhhhcCCCCceEEEeccc
Q psy3462 322 -----LVQQKMFEQRTQDLQKIPFRKLKISRLKAK 351 (795)
Q Consensus 322 -----~LQ~Ql~~kdip~l~~i~~~~l~~~~~KGr 351 (795)
.|-+|..+.-...+ .+..+++..+-|.
T Consensus 423 laPtr~La~Q~~~~l~~~~---~~~gi~v~~l~G~ 454 (780)
T 1gm5_A 423 MVPTSILAIQHYRRTVESF---SKFNIHVALLIGA 454 (780)
T ss_dssp ECSCHHHHHHHHHHHHHHH---TCSSCCEEECCSS
T ss_pred EeCcHHHHHHHHHHHHHHh---hhcCceEEEEeCC
Confidence 56666554322211 2234566666555
No 75
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.29 E-value=0.00028 Score=86.40 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=40.8
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 9 FKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 9 ~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
|.++.....+|.|+|.| ..++..+.+++++++.||||+|||++||.|++..+
T Consensus 67 ~~~~~~~~~gf~pt~iQ----~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~ 118 (1104)
T 4ddu_A 67 FRSFFKKKFGKDLTGYQ----RLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA 118 (1104)
T ss_dssp HHHHHHHHSSSCCCHHH----HHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHH----HHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH
Confidence 33444444467899999 55566666789999999999999999999988766
No 76
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.28 E-value=0.00024 Score=72.13 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=35.2
Q ss_pred ccCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHH
Q psy3462 245 EFPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLA 314 (795)
Q Consensus 245 ~fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~ 314 (795)
.+.| ++||.|.+.+..+. +++++++.||||+|||++|+.|++.
T Consensus 11 ~~g~~~l~~~Q~~~i~~i~---------------------------~~~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 11 EMGFKNFTEVQSKTIPLML---------------------------QGKNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp HTTCCSCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHh---------------------------cCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 3566 48999999887754 2467999999999999999999765
No 77
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.27 E-value=0.00019 Score=74.67 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=37.0
Q ss_pred cCCC-CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 246 FPVK-AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 246 fpy~-~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
+.|+ |||.|.+.+..+. .++++++.||||+|||++|++|++..+.
T Consensus 26 ~g~~~~~~~Q~~~i~~~~---------------------------~~~~~lv~a~TGsGKT~~~~~~~~~~l~ 71 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAI---------------------------LGMDVLCQAKSGMGKTAVFVLATLQQLE 71 (391)
T ss_dssp HSCCSCCHHHHHHHHHHT---------------------------TTCCEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred CCCCCCCHHHHHHHHHHh---------------------------cCCcEEEECCCCCcHHHHHHHHHHHhhc
Confidence 5665 9999998887653 2467999999999999999999887754
No 78
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.26 E-value=0.00022 Score=75.20 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=38.0
Q ss_pred ccCCC-CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 245 EFPVK-AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 245 ~fpy~-~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
.+.|+ |+|.|.+.+..+. +++++++.||||+|||++|++|++..+.
T Consensus 54 ~~g~~~~~~~Q~~ai~~i~---------------------------~~~~~lv~a~TGsGKT~~~~~~~~~~l~ 100 (410)
T 2j0s_A 54 AYGFEKPSAIQQRAIKQII---------------------------KGRDVIAQSQSGTGKTATFSISVLQCLD 100 (410)
T ss_dssp HHTCCSCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSSHHHHHHHHHHHTCC
T ss_pred HcCCCCCCHHHHHHHHHHh---------------------------CCCCEEEECCCCCCchHHHHHHHHHHHh
Confidence 36775 9999999888754 2467999999999999999999887654
No 79
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.26 E-value=0.00025 Score=77.01 Aligned_cols=46 Identities=28% Similarity=0.305 Sum_probs=38.0
Q ss_pred cCCC-CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHH
Q psy3462 246 FPVK-AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 318 (795)
Q Consensus 246 fpy~-~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~ 318 (795)
+.|+ |+|.|.+.+..+. .++++++.||||||||++|++|++..+..
T Consensus 74 ~g~~~pt~iQ~~ai~~i~---------------------------~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVIS---------------------------SGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp TTCCSCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHh---------------------------cCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 5664 9999998877652 25789999999999999999999887754
No 80
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.25 E-value=0.00025 Score=83.15 Aligned_cols=45 Identities=27% Similarity=0.158 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 17 NYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 17 ~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
+++.|+|.|.+.+. .+.++.++|+.+|||+|||++|++|++..+.
T Consensus 245 g~~~l~~~Q~~~i~----~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~ 289 (797)
T 4a2q_A 245 ETKKARSYQIELAQ----PAINGKNALICAPTGSGKTFVSILICEHHFQ 289 (797)
T ss_dssp ---CCCHHHHHHHH----HHHTTCCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHH----HHHhCCCEEEEeCCCChHHHHHHHHHHHHHH
Confidence 36789999965544 4556789999999999999999999887754
No 81
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.25 E-value=0.0003 Score=73.78 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=37.2
Q ss_pred cCCC-CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 246 FPVK-AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 246 fpy~-~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
+.|+ |+|.|.+.+..+.+ ++++++.||||+|||++|++|++..+.
T Consensus 39 ~g~~~~~~~Q~~~i~~i~~---------------------------~~~~li~a~TGsGKT~~~~~~~~~~~~ 84 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAIT---------------------------GRDILARAKNGTGKTAAFVIPTLEKVK 84 (400)
T ss_dssp TTCCSCCHHHHHHHHHHHH---------------------------TCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCCCCCCHHHHHHHHHHhc---------------------------CCCEEEECCCCcHHHHHHHHHHHHHHh
Confidence 4564 99999999887642 457999999999999999999987764
No 82
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.23 E-value=0.00018 Score=75.02 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=35.7
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 316 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~ 316 (795)
+.| .|+|.|...+..+. .. .++++++.||||||||++|++|++..+
T Consensus 110 ~g~~~pt~iQ~~ai~~il---~~----------------------~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLML---AE----------------------PPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp TTCCSCCHHHHHHHHHHT---SS----------------------SCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHH---cC----------------------CCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 455 58999998876642 21 137899999999999999999988654
No 83
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.22 E-value=0.00025 Score=77.37 Aligned_cols=46 Identities=30% Similarity=0.322 Sum_probs=36.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHH
Q psy3462 246 FPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 318 (795)
Q Consensus 246 fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~ 318 (795)
.+++|+|.|.+.+..+. .++++++.+|||+|||++|++|++..+..
T Consensus 4 ~~~~~~~~Q~~~i~~~~---------------------------~~~~~l~~~~tGsGKT~~~~~~~~~~~~~ 49 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAI---------------------------NGKNALICAPTGSGKTFVSILICEHHFQN 49 (556)
T ss_dssp ----CCHHHHHHHHHHH---------------------------TTCCEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHH---------------------------cCCCEEEEcCCCChHHHHHHHHHHHHHHh
Confidence 46899999999887763 14679999999999999999999887765
No 84
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00039 Score=85.14 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=39.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 15 EPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 15 ~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
...+|.|++.| ..++.++.++.++|+.||||+|||++|++|++..+.
T Consensus 179 ~~~~f~ltp~Q----~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~ 225 (1108)
T 3l9o_A 179 RTYPFTLDPFQ----DTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK 225 (1108)
T ss_dssp SCCSSCCCHHH----HHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHH----HHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh
Confidence 34577899999 555666788899999999999999999999887764
No 85
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.20 E-value=0.00024 Score=70.84 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 18 YFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
.+..++.| ++++.++.+++++++.||||+|||.++.++++....
T Consensus 59 ~~p~~~~q----~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~ 102 (235)
T 3llm_A 59 LLPVKKFE----SEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFI 102 (235)
T ss_dssp TSGGGGGH----HHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCChHHHH----HHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchh
Confidence 44567889 666677788999999999999999999988776544
No 86
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=97.19 E-value=0.00043 Score=78.78 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHhh------
Q psy3462 247 PVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEK------ 320 (795)
Q Consensus 247 py~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~~------ 320 (795)
+|++||.|.+.+..+.+ ++++++.+|||+|||++|+.|++..+....
T Consensus 5 ~~~l~~~Q~~~i~~il~---------------------------g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~ 57 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALE---------------------------GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPG 57 (699)
T ss_dssp --CCCHHHHHHHHHHHS---------------------------SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCccHHHHHHHHHHHh---------------------------CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCC
Confidence 58899999998887642 467999999999999999999988776542
Q ss_pred H--------HHHHHH-HhhhhhhhhhcCCCCceEEEecccc
Q psy3462 321 E--------LVQQKM-FEQRTQDLQKIPFRKLKISRLKAKD 352 (795)
Q Consensus 321 k--------~LQ~Ql-~~kdip~l~~i~~~~l~~~~~KGr~ 352 (795)
+ .|..|. .+. +.+..+..+++..+-|..
T Consensus 58 ~vlvl~P~~~L~~Q~~~~~----l~~~~~~~~~v~~~~g~~ 94 (699)
T 4gl2_A 58 KVIVLVNKVLLVEQLFRKE----FQPFLKKWYRVIGLSGDT 94 (699)
T ss_dssp CBCCEESCSHHHHHHHHHT----HHHHHTTTSCEEEEC---
T ss_pred eEEEEECCHHHHHHHHHHH----HHHHcCcCceEEEEeCCc
Confidence 2 466666 432 233333346666666553
No 87
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.17 E-value=0.00023 Score=74.06 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=37.9
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 318 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~ 318 (795)
++| +|+|.|.+.+..+.+ ++++++.||||+|||++|++|++.++..
T Consensus 39 ~g~~~~~~~Q~~~i~~i~~---------------------------~~~~lv~~~TGsGKT~~~~~~~~~~l~~ 85 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPIIE---------------------------GHDVLAQAQSGTGKTGTFSIAALQRIDT 85 (394)
T ss_dssp HTCCSCCHHHHHHHHHHHH---------------------------TCCEEECCCSSHHHHHHHHHHHHHHCCT
T ss_pred cCCCCCCHHHHHHHHHHhC---------------------------CCCEEEECCCCChHHHHHHHHHHHHhhc
Confidence 566 699999988877642 4679999999999999999999877643
No 88
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.13 E-value=0.00026 Score=80.98 Aligned_cols=43 Identities=33% Similarity=0.475 Sum_probs=35.8
Q ss_pred ccCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHH
Q psy3462 245 EFPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLA 314 (795)
Q Consensus 245 ~fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~ 314 (795)
.|+| .+||.|.+.+..+. +++++++.||||+|||++|++|++.
T Consensus 39 ~fg~~~~rp~Q~~~i~~il---------------------------~g~d~lv~~pTGsGKTl~~~lpal~ 82 (591)
T 2v1x_A 39 VFKLEKFRPLQLETINVTM---------------------------AGKEVFLVMPTGGGKSLCYQLPALC 82 (591)
T ss_dssp TSCCCSCCTTHHHHHHHHH---------------------------TTCCEEEECCTTSCTTHHHHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHHH---------------------------cCCCEEEEECCCChHHHHHHHHHHH
Confidence 4787 58999998887753 2567999999999999999999864
No 89
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.11 E-value=0.00042 Score=72.70 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=37.0
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
+.| .|+|.|.+.+..+. +++++++.||||+|||++|+++++..+.
T Consensus 58 ~~~~~~~~~Q~~~i~~~~---------------------------~~~~~lv~a~TGsGKT~~~~~~~~~~~~ 103 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCI---------------------------KGYDVIAQAQSGTGKTATFAISILQQIE 103 (414)
T ss_dssp TTCCSCCHHHHHHHHHHH---------------------------TTCCEEECCCSCSSSHHHHHHHHHHHCC
T ss_pred cCCCCCCHHHHHHhHHHh---------------------------CCCCEEEECCCCCcccHHHHHHHHHHHh
Confidence 566 58999998887654 2467999999999999999999887654
No 90
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.10 E-value=0.00013 Score=81.07 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcC--CcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 17 NYFLKYSSCKILHLQVIQGCNKA--KNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 17 ~~~~p~~~Q~~mm~~i~~al~~~--~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
++..|++.|.+.+ .++.++ +++++.||||+|||++|++|++..+
T Consensus 138 g~~~p~~~Q~~ai----~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l 183 (508)
T 3fho_A 138 XXXXXXKIQEKAL----PLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV 183 (508)
T ss_dssp -CEECCCTTSSSH----HHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHS
T ss_pred cccCcHHHHHHHH----HHHHcCCCCCEEEECCCCccHHHHHHHHHHHHH
Confidence 4446899995544 444444 8999999999999999999988653
No 91
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.00065 Score=82.50 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 17 NYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 17 ~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
.+|.|++.|.+. +.++.++.++++.||||+|||++|++|++..+.
T Consensus 83 ~~f~L~~~Q~ea----i~~l~~g~~vLV~apTGSGKTlva~lai~~~l~ 127 (1010)
T 2xgj_A 83 YPFTLDPFQDTA----ISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK 127 (1010)
T ss_dssp CSSCCCHHHHHH----HHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHH----HHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc
Confidence 457899999554 455667889999999999999999999887653
No 92
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.08 E-value=0.00044 Score=72.35 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=37.6
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
+.| .|+|.|.+.+..+.+. .++++++.||||+|||++|++|++..+.
T Consensus 43 ~g~~~~~~~Q~~~i~~~~~~-------------------------~~~~~lv~apTGsGKT~~~~~~~~~~~~ 90 (412)
T 3fht_A 43 MGFNRPSKIQENALPLMLAE-------------------------PPQNLIAQSQSGTGKTAAFVLAMLSQVE 90 (412)
T ss_dssp TTCCSCCHHHHHHHHHHHSS-------------------------SCCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred cCCCCCCHHHHHHHHHHhcC-------------------------CCCeEEEECCCCchHHHHHHHHHHHHhh
Confidence 455 5899999988776431 1478999999999999999999887654
No 93
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.08 E-value=0.00044 Score=71.59 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=37.2
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
+.| +|+|.|.+.+..+.+ . .++++++.||||+|||++|+.+++..+.
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~---~----------------------~~~~~lv~a~TGsGKT~~~~~~~~~~~~ 70 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLH---N----------------------PPRNMIAQSQSGTGKTAAFSLTMLTRVN 70 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHC---S----------------------SCCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCCCCCCHHHHHHHHHHHc---C----------------------CCCeEEEECCCCCcHHHHHHHHHHHHhc
Confidence 344 699999998877642 1 1378999999999999999999887653
No 94
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=97.07 E-value=0.00044 Score=82.44 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHH
Q psy3462 19 FLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAW 63 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~ 63 (795)
|.|+|+| ...+.++..|+ |.+|+||+||||||++|++..
T Consensus 82 ~~pt~VQ----~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~ 120 (844)
T 1tf5_A 82 MFPFKVQ----LMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLN 120 (844)
T ss_dssp CCCCHHH----HHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcHHH----HHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHH
Confidence 3999999 55556677776 999999999999999998854
No 95
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.06 E-value=0.00056 Score=70.08 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=37.4
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 318 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~ 318 (795)
+.| +|+|.|.+.+..+.+ .++++++.||||+|||++|+.+++.++..
T Consensus 24 ~g~~~~~~~Q~~~i~~~~~--------------------------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~ 71 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLFLN--------------------------DEYNIVAQARTGSGKTASFAIPLIELVNE 71 (367)
T ss_dssp HTCCSCCHHHHHHHHHHHH--------------------------TCSEEEEECCSSSSHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHhC--------------------------CCCCEEEECCCCChHHHHHHHHHHHHhcc
Confidence 455 699999998877532 13689999999999999999998877643
No 96
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.02 E-value=0.00094 Score=68.06 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 19 FLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
+.|++.|.+.+..+.+ +.++++.+|||+|||++++.++....
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYL 153 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHH
Confidence 5899999776665544 36688999999999999988876643
No 97
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=97.00 E-value=0.001 Score=81.75 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=47.1
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCC--cEEEECCCCCchHHHHHHHHHHHH
Q psy3462 7 DIFKTYLNEPNYFLKYSSCKILHLQVIQGCNKAK--NCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~--~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
.+++++.+. .+|.|+|.|.+.+..+.+.+.++. ++++.||||+|||++++.+++..+
T Consensus 591 ~~~~~~~~~-f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~ 649 (1151)
T 2eyq_A 591 EQYQLFCDS-FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 649 (1151)
T ss_dssp HHHHHHHHT-CCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555555 456789999999999999888776 899999999999999999987653
No 98
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.98 E-value=0.00026 Score=78.06 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 28 LHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 28 mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
|-+...+++.+++++|+.||||+|||++|++|++..+.
T Consensus 10 ~~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~ 47 (459)
T 2z83_A 10 MGRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAI 47 (459)
T ss_dssp -----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 33444667788899999999999999999999997653
No 99
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.97 E-value=0.00066 Score=71.20 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 18 YFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
.+.|||.|.+.+..+ .++ ++++.+|||+|||++++++++..+.
T Consensus 7 ~~~l~~~Q~~~i~~~----~~~-~~ll~~~tG~GKT~~~~~~~~~~~~ 49 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKC----KET-NCLIVLPTGLGKTLIAMMIAEYRLT 49 (494)
T ss_dssp HHCCCHHHHHHHHHG----GGS-CEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHH----hhC-CEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 467999996666544 344 9999999999999999999887654
No 100
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=96.96 E-value=0.00099 Score=81.62 Aligned_cols=76 Identities=26% Similarity=0.296 Sum_probs=54.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHhhH---
Q psy3462 245 EFPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKE--- 321 (795)
Q Consensus 245 ~fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~~k--- 321 (795)
.++|+|+|.|.+.+..+. +++++++.||||||||++||.+++..+....+
T Consensus 74 ~~gf~pt~iQ~~ai~~il---------------------------~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Li 126 (1104)
T 4ddu_A 74 KFGKDLTGYQRLWAKRIV---------------------------QGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSAL 126 (1104)
T ss_dssp HSSSCCCHHHHHHHHHHT---------------------------TTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEE
T ss_pred hcCCCCCHHHHHHHHHHH---------------------------cCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEE
Confidence 468899999998877653 25689999999999999999998777644432
Q ss_pred -----HHHHHHHhhhhhhhhhcCCCCceEEEeccc
Q psy3462 322 -----LVQQKMFEQRTQDLQKIPFRKLKISRLKAK 351 (795)
Q Consensus 322 -----~LQ~Ql~~kdip~l~~i~~~~l~~~~~KGr 351 (795)
.|-.|+.+. ++++.+..+++..+-|.
T Consensus 127 l~PtreLa~Q~~~~----l~~l~~~~i~v~~l~Gg 157 (1104)
T 4ddu_A 127 VFPTVTLVKQTLER----LQKLADEKVKIFGFYSS 157 (1104)
T ss_dssp EESSHHHHHHHHHH----HHTTSCTTSCEEEECTT
T ss_pred EechHHHHHHHHHH----HHHhhCCCCeEEEEeCC
Confidence 566666543 33433556677666554
No 101
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=96.96 E-value=0.00057 Score=82.05 Aligned_cols=44 Identities=27% Similarity=0.151 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 17 NYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 17 ~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
+++.|++.|.+.+. .+.++.++++.+|||+|||++|++|++..+
T Consensus 245 ~~~~~r~~Q~~ai~----~il~g~~~ll~a~TGsGKTl~~~~~i~~~l 288 (936)
T 4a2w_A 245 ETKKARSYQIELAQ----PAINGKNALICAPTGSGKTFVSILICEHHF 288 (936)
T ss_dssp ---CCCHHHHHHHH----HHHTTCCEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHH----HHHcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 47789999965554 445678999999999999999999987653
No 102
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.94 E-value=0.00056 Score=74.52 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=37.0
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
+.| .|+|.|.+.+..+.+ . .++++++.||||+|||++|++|++..+.
T Consensus 110 ~g~~~p~~~Q~~ai~~il~---~----------------------~~~~~l~~a~TGsGKT~~~~l~il~~l~ 157 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLA---E----------------------PPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTS---B----------------------SCCEEEEECCSSSSHHHHHHHHHHTTCC
T ss_pred cCCCCCCHHHHHHHHHHHc---C----------------------CCCcEEEEcCCCCchhHHHHHHHHHHHh
Confidence 455 589999998877632 1 1478999999999999999999876543
No 103
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.90 E-value=0.0016 Score=80.13 Aligned_cols=82 Identities=22% Similarity=0.318 Sum_probs=57.5
Q ss_pred eccCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHhhH--
Q psy3462 244 VEFPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKE-- 321 (795)
Q Consensus 244 ~~fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~~k-- 321 (795)
..|||+++|.|.+.+..+.+.+..+ ...++++.||||+|||++++.+++..+...++
T Consensus 598 ~~f~~~~t~~Q~~ai~~il~~~~~g---------------------~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vl 656 (1151)
T 2eyq_A 598 DSFPFETTPDQAQAINAVLSDMCQP---------------------LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 656 (1151)
T ss_dssp HTCCSCCCHHHHHHHHHHHHHHHSS---------------------SCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEE
T ss_pred HhCCCCCCHHHHHHHHHHHHHHhcC---------------------CcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 3689999999999999998877542 12379999999999999999998776655433
Q ss_pred ------HHHHHHHhhhhhhhhh-cCCCCceEEEecc
Q psy3462 322 ------LVQQKMFEQRTQDLQK-IPFRKLKISRLKA 350 (795)
Q Consensus 322 ------~LQ~Ql~~kdip~l~~-i~~~~l~~~~~KG 350 (795)
.|-+|..+. +.+ ..+.++++..+-|
T Consensus 657 vlvPt~~La~Q~~~~----~~~~~~~~~i~v~~l~~ 688 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDN----FRDRFANWPVRIEMISR 688 (1151)
T ss_dssp EECSSHHHHHHHHHH----HHHHSTTTTCCEEEEST
T ss_pred EEechHHHHHHHHHH----HHHHhhcCCCeEEEEeC
Confidence 455665543 222 2234555555543
No 104
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.90 E-value=0.00089 Score=72.66 Aligned_cols=41 Identities=20% Similarity=0.089 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHH
Q psy3462 18 YFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLA 62 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~ 62 (795)
.+.|+|.|.+.+ +++.++.++++.+|||+|||++|+.++..
T Consensus 91 ~~~l~~~Q~~ai----~~i~~~~~~ll~~~TGsGKT~~~l~~i~~ 131 (472)
T 2fwr_A 91 EISLRDYQEKAL----ERWLVDKRGCIVLPTGSGKTHVAMAAINE 131 (472)
T ss_dssp CCCBCHHHHHHH----HHHTTTTEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHH----HHHHhcCCEEEEeCCCCCHHHHHHHHHHH
Confidence 457999995554 44555677999999999999999998764
No 105
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.88 E-value=0.00036 Score=78.33 Aligned_cols=43 Identities=30% Similarity=0.553 Sum_probs=35.8
Q ss_pred ccCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHH
Q psy3462 245 EFPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLA 314 (795)
Q Consensus 245 ~fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~ 314 (795)
.|+| ++||.|.+.+..+. +++++++.||||+|||++|++|++.
T Consensus 20 ~~g~~~~r~~Q~~~i~~il---------------------------~g~d~lv~apTGsGKTl~~~lp~l~ 63 (523)
T 1oyw_A 20 TFGYQQFRPGQEEIIDTVL---------------------------SGRDCLVVMPTGGGKSLCYQIPALL 63 (523)
T ss_dssp TTCCSSCCTTHHHHHHHHH---------------------------TTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHH---------------------------cCCCEEEECCCCcHHHHHHHHHHHH
Confidence 4777 58999998888764 2468999999999999999999873
No 106
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0012 Score=80.24 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=41.9
Q ss_pred eeccCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHh
Q psy3462 243 KVEFPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 319 (795)
Q Consensus 243 ~~~fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~ 319 (795)
...|||+++|.|.+.+..+.+ ++++++.||||+|||++|+++++..+...
T Consensus 80 ~~~~~f~L~~~Q~eai~~l~~---------------------------g~~vLV~apTGSGKTlva~lai~~~l~~g 129 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCIDR---------------------------GESVLVSAHTSAGKTVVAEYAIAQSLKNK 129 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHHHH---------------------------TCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHHHHHc---------------------------CCCEEEECCCCCChHHHHHHHHHHHhccC
Confidence 557899999999999887532 46799999999999999999988777554
No 107
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.83 E-value=0.0013 Score=72.05 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHhh------
Q psy3462 247 PVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEK------ 320 (795)
Q Consensus 247 py~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~~------ 320 (795)
+++++|.|.+.+..+.+ +..+++.+|||+|||++++.++...+...+
T Consensus 111 ~~~l~~~Q~~ai~~~~~---------------------------~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl 163 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLV---------------------------NRRRILNLPTSAGRSLIQALLARYYLENYEGKILII 163 (510)
T ss_dssp EECCCHHHHHHHHHHHH---------------------------HSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred CCCCCHHHHHHHHHHHh---------------------------cCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 67999999999888643 256899999999999999998877765543
Q ss_pred ---HHHHHHHHh
Q psy3462 321 ---ELVQQKMFE 329 (795)
Q Consensus 321 ---k~LQ~Ql~~ 329 (795)
..|-+|..+
T Consensus 164 ~P~~~L~~Q~~~ 175 (510)
T 2oca_A 164 VPTTALTTQMAD 175 (510)
T ss_dssp ESSHHHHHHHHH
T ss_pred ECcHHHHHHHHH
Confidence 256666654
No 108
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=96.82 E-value=0.0014 Score=79.77 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=38.0
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHH
Q psy3462 9 FKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 66 (795)
Q Consensus 9 ~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~ 66 (795)
|.+......+|.| +.|. +++.++.+++++++.||||+|||+ |++|++..+..
T Consensus 46 ~~~~~~~~~g~~p-~iQ~----~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~ 97 (1054)
T 1gku_B 46 FVEFFRKCVGEPR-AIQK----MWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL 97 (1054)
T ss_dssp HHHHHHTTTCSCC-HHHH----HHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCH-HHHH----HHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh
Confidence 3444433344459 9995 455555578999999999999998 99998887653
No 109
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=96.82 E-value=0.001 Score=80.67 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=41.0
Q ss_pred HHHHHHhC---CCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 8 IFKTYLNE---PNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 8 ~~~~~~~~---~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
.|.++..+ ..+|.|++.| .+++.++.+++++++.||||+|||++|++|++....
T Consensus 24 ~f~~l~~~~~~~~~f~l~~~Q----~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~ 80 (997)
T 4a4z_A 24 NFDELIPNPARSWPFELDTFQ----KEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR 80 (997)
T ss_dssp THHHHCSSCSCCCSSCCCHHH----HHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH
T ss_pred chhhhhHhHHHhCCCCCCHHH----HHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh
Confidence 35555333 3467789999 455667778899999999999999999999776543
No 110
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=96.82 E-value=0.00022 Score=78.30 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 19 FLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
-.|.|+| +.+-..+.++.++|+.||||+|||++|++|+|..+.
T Consensus 3 ~q~~~iq----~~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~ 45 (451)
T 2jlq_A 3 AMGEPDY----EVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL 45 (451)
T ss_dssp CCCSCCC----CCCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHH
T ss_pred CCCCCcH----HHHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHH
Confidence 3567777 323333444555699999999999999999987643
No 111
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.81 E-value=0.0013 Score=66.38 Aligned_cols=40 Identities=20% Similarity=0.054 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHH
Q psy3462 18 YFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVL 61 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL 61 (795)
.+.|++.|.+.+. .+.++.++++.+|||+|||++++.++.
T Consensus 91 ~~~l~~~Q~~ai~----~~~~~~~~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 91 EISLRDYQEKALE----RWLVDKRGCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp CCCCCHHHHHHHH----HHTTTSEEEEEESSSTTHHHHHHHHHH
T ss_pred CCCcCHHHHHHHH----HHHhCCCEEEEeCCCCCHHHHHHHHHH
Confidence 4578999965554 444556799999999999999887754
No 112
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=96.80 E-value=0.001 Score=80.72 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=41.2
Q ss_pred eeeccCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHh
Q psy3462 242 VKVEFPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 319 (795)
Q Consensus 242 ~~~~fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~ 319 (795)
....|||+++|.|.+.+..+. +++++++.||||+|||++|+.+++..+...
T Consensus 32 ~~~~~~f~l~~~Q~~aI~~il---------------------------~g~~vlv~apTGsGKTlv~~~~i~~~~~~g 82 (997)
T 4a4z_A 32 PARSWPFELDTFQKEAVYHLE---------------------------QGDSVFVAAHTSAGKTVVAEYAIAMAHRNM 82 (997)
T ss_dssp CSCCCSSCCCHHHHHHHHHHH---------------------------TTCEEEEECCTTSCSHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCHHHHHHHHHHH---------------------------cCCCEEEEECCCCcHHHHHHHHHHHHHhcC
Confidence 344799999999998777653 257899999999999999999987766544
No 113
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.78 E-value=0.00085 Score=73.58 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 18 YFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
.+.|+|.|.+.+..+.+ +.++++.+|||+|||++|+.|++..+
T Consensus 111 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYL 153 (510)
T ss_dssp EECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHH
Confidence 45899999777666553 47899999999999999999877665
No 114
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.001 Score=81.48 Aligned_cols=62 Identities=13% Similarity=0.247 Sum_probs=48.3
Q ss_pred CeeeccCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHhh
Q psy3462 241 GVKVEFPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEK 320 (795)
Q Consensus 241 ~~~~~fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~~ 320 (795)
.....|||+++|.|.+.+..+ + .++++++.||||+|||++|+.|++..+...+
T Consensus 176 ~~~~~~~f~ltp~Q~~AI~~i---~------------------------~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~ 228 (1108)
T 3l9o_A 176 NEARTYPFTLDPFQDTAISCI---D------------------------RGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ 228 (1108)
T ss_dssp SCSSCCSSCCCHHHHHHHHHH---T------------------------TTCCEEEECCSSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCCHHHHHHHHHH---H------------------------cCCCEEEECCCCCChHHHHHHHHHHHHhcCC
Confidence 345579999999999888775 2 2578999999999999999999988776543
Q ss_pred H--------HHHHHHHh
Q psy3462 321 E--------LVQQKMFE 329 (795)
Q Consensus 321 k--------~LQ~Ql~~ 329 (795)
+ .|-.|...
T Consensus 229 rvlvl~PtraLa~Q~~~ 245 (1108)
T 3l9o_A 229 RVIYTSPIKALSNQKYR 245 (1108)
T ss_dssp EEEEEESSHHHHHHHHH
T ss_pred eEEEEcCcHHHHHHHHH
Confidence 3 56666553
No 115
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.73 E-value=0.0015 Score=74.40 Aligned_cols=48 Identities=27% Similarity=0.299 Sum_probs=39.0
Q ss_pred ccCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHh
Q psy3462 245 EFPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 319 (795)
Q Consensus 245 ~fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~ 319 (795)
.|+| +|||.|.+.+..+. .++++++.+|||+|||++|++|++..+...
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l---------------------------~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~ 56 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAM---------------------------KGKNTIICAPTGCGKTFVSLLICEHHLKKF 56 (696)
T ss_dssp TTC--CCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred ccCCCCccHHHHHHHHHHH---------------------------cCCCEEEEcCCCchHHHHHHHHHHHHHHhC
Confidence 4665 69999999987753 246899999999999999999998877653
No 116
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.68 E-value=0.0011 Score=69.66 Aligned_cols=42 Identities=26% Similarity=0.331 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 248 VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 248 y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
+++||.|.+.+..+.+ + ++++.+|||+|||++++.+++..+.
T Consensus 8 ~~l~~~Q~~~i~~~~~---------------------------~-~~ll~~~tG~GKT~~~~~~~~~~~~ 49 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE---------------------------T-NCLIVLPTGLGKTLIAMMIAEYRLT 49 (494)
T ss_dssp HCCCHHHHHHHHHGGG---------------------------S-CEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhh---------------------------C-CEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7899999998877431 3 7899999999999999999887765
No 117
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=96.66 E-value=0.0013 Score=78.37 Aligned_cols=40 Identities=23% Similarity=0.112 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 19 FLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
..||+.| ....-++..|. |.|++||||||+||++|++..+
T Consensus 73 ~~p~~VQ----~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~ 112 (853)
T 2fsf_A 73 MRHFDVQ----LLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNA 112 (853)
T ss_dssp CCCCHHH----HHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCChHH----HhhcccccCCe--eeeecCCchHHHHHHHHHHHHH
Confidence 5899999 44444566665 9999999999999999988543
No 118
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=96.62 E-value=0.0013 Score=78.94 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 18 YFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
++.||++| ....-.+..|+ |.||+||+||||+|++|++..+
T Consensus 109 G~rP~~VQ----~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~a 149 (922)
T 1nkt_A 109 DQRPFDVQ----VMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNA 149 (922)
T ss_dssp SCCCCHHH----HHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHH
T ss_pred CCCCCHHH----HHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHH
Confidence 35999999 44445666665 9999999999999999987544
No 119
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.55 E-value=0.0038 Score=63.56 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 248 VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 248 y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
++++|.|.+.+..+.+ ++.+++.+|||+|||++++.++...+.
T Consensus 112 ~~l~~~Q~~ai~~~l~---------------------------~~~~ll~~~tGsGKT~~~~~~~~~~~~ 154 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV---------------------------NRRRILNLPTSAGRSLIQALLARYYLE 154 (282)
T ss_dssp CCCCHHHHHHHHHHHH---------------------------HSEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHh---------------------------cCCeEEEcCCCCCcHHHHHHHHHHHHH
Confidence 6899999998887543 235688999999999999887665544
No 120
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.55 E-value=0.00044 Score=79.68 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 19 FLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
-.|.|+|.. ....+.+++++|+.||||||||++|++|+|..+.
T Consensus 170 ~~~lpiq~~----~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~ 212 (618)
T 2whx_A 170 RIGEPDYEV----DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL 212 (618)
T ss_dssp CCCCCCCCC----CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred ccCCCcccc----CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456777754 2778888999999999999999999999997754
No 121
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.54 E-value=0.0017 Score=70.37 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=35.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHH
Q psy3462 245 EFPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAW 315 (795)
Q Consensus 245 ~fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~ 315 (795)
.++++++|.|.+.+..+.+ ++.+++.+|||+|||+.|+.++...
T Consensus 89 ~~~~~l~~~Q~~ai~~i~~---------------------------~~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 89 DAEISLRDYQEKALERWLV---------------------------DKRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp CCCCCBCHHHHHHHHHHTT---------------------------TTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHh---------------------------cCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 4688999999998876531 2459999999999999999886543
No 122
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.48 E-value=0.0029 Score=71.09 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcC-CcEEEECCCCCchHHHHHHH
Q psy3462 19 FLKYSSCKILHLQVIQGCNKA-KNCLLESPTGSGKTLALLCS 59 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~~-~~~llEAPTGTGKTLAyL~p 59 (795)
+.|++.|.+.+..+.+++.++ .++++.+|||+|||++++..
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~ 218 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQI 218 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHH
Confidence 469999999999999998776 55899999999999996544
No 123
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=96.40 E-value=0.0039 Score=79.65 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=40.3
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHH-hcCCcEEEECCCCCchHHHHHHHHHHHHHH
Q psy3462 8 IFKTYLNEPNYFLKYSSCKILHLQVIQGC-NKAKNCLLESPTGSGKTLALLCSVLAWQRK 66 (795)
Q Consensus 8 ~~~~~~~~~~~~~p~~~Q~~mm~~i~~al-~~~~~~llEAPTGTGKTLAyL~paL~~~~~ 66 (795)
.|+++... .+..+.|.| .+++.++ +.++++++.||||+|||+++.+|++..+..
T Consensus 915 ~~e~l~~~-~f~~fnpiQ----~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~ 969 (1724)
T 4f92_B 915 AFESLYQD-KFPFFNPIQ----TQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ 969 (1724)
T ss_dssp HHHTTTTT-TCSBCCHHH----HHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCCCCHHH----HHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh
Confidence 45555544 344578999 4455555 567899999999999999999999877653
No 124
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=96.40 E-value=0.0026 Score=81.17 Aligned_cols=45 Identities=27% Similarity=0.271 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHH-HHhcCCcEEEECCCCCchHHHHHHHHHHHHHH
Q psy3462 18 YFLKYSSCKILHLQVIQ-GCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 66 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~-al~~~~~~llEAPTGTGKTLAyL~paL~~~~~ 66 (795)
+-.+.+.|. .+++ +++.++|+|+.||||+|||+++.+|++..+..
T Consensus 77 ~~~ln~iQs----~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~ 122 (1724)
T 4f92_B 77 FKTLNRIQS----KLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGK 122 (1724)
T ss_dssp CSBCCHHHH----HTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGG
T ss_pred CCCCCHHHH----HHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHh
Confidence 445779994 4444 45778999999999999999999999987754
No 125
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=96.40 E-value=0.0027 Score=74.50 Aligned_cols=46 Identities=30% Similarity=0.336 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHh
Q psy3462 247 PVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 319 (795)
Q Consensus 247 py~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~ 319 (795)
+++|+|.|.+.+..+. +++++++.+|||+|||++|++|++..+...
T Consensus 246 ~~~l~~~Q~~~i~~~l---------------------------~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~ 291 (797)
T 4a2q_A 246 TKKARSYQIELAQPAI---------------------------NGKNALICAPTGSGKTFVSILICEHHFQNM 291 (797)
T ss_dssp --CCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHH---------------------------hCCCEEEEeCCCChHHHHHHHHHHHHHHhc
Confidence 3579999999887653 246799999999999999999998887653
No 126
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.37 E-value=0.0028 Score=63.82 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=33.5
Q ss_pred eeccCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHH
Q psy3462 243 KVEFPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSV 312 (795)
Q Consensus 243 ~~~fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~ 312 (795)
.+.++++++|.|.+.+..+. + ++.+++.+|||+|||+.++.++
T Consensus 87 ~~~~~~~l~~~Q~~ai~~~~---~------------------------~~~~ll~~~tG~GKT~~a~~~~ 129 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALERWL---V------------------------DKRGCIVLPTGSGKTHVAMAAI 129 (237)
T ss_dssp CCCCCCCCCHHHHHHHHHHT---T------------------------TSEEEEEESSSTTHHHHHHHHH
T ss_pred cccCCCCcCHHHHHHHHHHH---h------------------------CCCEEEEeCCCCCHHHHHHHHH
Confidence 34566899999999887642 2 2458999999999999987764
No 127
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=96.32 E-value=0.0004 Score=80.93 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=33.1
Q ss_pred CCCHHHH-----HHHHHHH--HHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 20 LKYSSCK-----ILHLQVI--QGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 20 ~p~~~Q~-----~mm~~i~--~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
.|+++|. +-+..+. +.+.+++++|+.||||+|||++|++|++..+.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~ 267 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAI 267 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5778886 3332222 23347899999999999999999999987653
No 128
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.30 E-value=0.00096 Score=73.21 Aligned_cols=31 Identities=29% Similarity=0.274 Sum_probs=27.2
Q ss_pred HHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 35 GCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 35 al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
++.+++++++.||||+|||++|++|++..+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~ 34 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECA 34 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4667899999999999999999999888653
No 129
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.25 E-value=0.0022 Score=73.97 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=49.5
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHhhH---
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKE--- 321 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~~k--- 321 (795)
++| +++|.|.+.+..+. +++++++.||||+|||++++.+++..+...++
T Consensus 21 ~g~~~l~~~Q~~~i~~i~---------------------------~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~ 73 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEKVF---------------------------SGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLY 73 (702)
T ss_dssp C---CCCCCCHHHHHHHT---------------------------TCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCCCHHHHHHHHHHh---------------------------CCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEE
Confidence 567 68999988877742 25789999999999999999999876654332
Q ss_pred -----HHHHHHHhhhhhhhhhcCCCCceEEEeccc
Q psy3462 322 -----LVQQKMFEQRTQDLQKIPFRKLKISRLKAK 351 (795)
Q Consensus 322 -----~LQ~Ql~~kdip~l~~i~~~~l~~~~~KGr 351 (795)
.|-.|..+. +++.....+++..+-|.
T Consensus 74 i~P~r~La~q~~~~----~~~~~~~g~~v~~~~G~ 104 (702)
T 2p6r_A 74 VVPLRALAGEKYES----FKKWEKIGLRIGISTGD 104 (702)
T ss_dssp EESSHHHHHHHHHH----HTTTTTTTCCEEEECSS
T ss_pred EeCcHHHHHHHHHH----HHHHHhcCCEEEEEeCC
Confidence 466665543 22222334566666554
No 130
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.24 E-value=0.0046 Score=69.52 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHH
Q psy3462 248 VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVL 313 (795)
Q Consensus 248 y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l 313 (795)
+.+||.|.+.+..+.+.+.++ ++.+++.+|||||||++.+..+.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~----------------------~~~~ll~~~TGsGKT~~~~~~~~ 220 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQG----------------------KKRSLITMATGTGKTVVAFQISW 220 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTT----------------------CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcC----------------------CCceEEEecCCCChHHHHHHHHH
Confidence 479999999999998877542 35689999999999999765443
No 131
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.12 E-value=0.0033 Score=72.62 Aligned_cols=46 Identities=28% Similarity=0.345 Sum_probs=37.2
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
++| +++|.|.+.+..+ + .+++++++.||||+|||+++.++++..+.
T Consensus 19 ~g~~~l~~~Q~~~i~~~---~-----------------------~~~~~~lv~apTGsGKT~~~~l~il~~~~ 65 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSG---I-----------------------LEGKNALISIPTASGKTLIAEIAMVHRIL 65 (720)
T ss_dssp TTCCBCCHHHHHHHTTT---G-----------------------GGTCEEEEECCGGGCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH---h-----------------------cCCCcEEEEcCCccHHHHHHHHHHHHHHH
Confidence 677 6899998877652 1 13578999999999999999999987665
No 132
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.08 E-value=0.0041 Score=74.83 Aligned_cols=41 Identities=24% Similarity=0.139 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 18 YFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
++.|+++| ....-.+..|. |.+|.||+|||++|++|++..+
T Consensus 77 G~~Pt~VQ----~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~a 117 (997)
T 2ipc_A 77 GMRHFDVQ----LIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNA 117 (997)
T ss_dssp CCCCCHHH----HHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHH
T ss_pred CCCCcHHH----HhhcccccCCc--eeeccCCCchHHHHHHHHHHHH
Confidence 45999999 44445666666 9999999999999999986544
No 133
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.08 E-value=0.0044 Score=71.35 Aligned_cols=46 Identities=30% Similarity=0.408 Sum_probs=37.6
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 246 FPV-KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 246 fpy-~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
++| +++|.|.+.+..+ + .+++++++.||||+|||+++..+++..+.
T Consensus 26 ~g~~~l~~~Q~~~i~~~---~-----------------------~~~~~~lv~apTGsGKT~~~~l~il~~~~ 72 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKG---L-----------------------LEGNRLLLTSPTGSGKTLIAEMGIISFLL 72 (715)
T ss_dssp TSCCBCCHHHHHHHHTT---T-----------------------TTTCCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH---h-----------------------cCCCcEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 677 6899999887752 2 13578999999999999999999987665
No 134
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.03 E-value=0.0034 Score=68.93 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=27.5
Q ss_pred ccccCcEEEeCCCCCChhHHHHHHHHHHHHHh
Q psy3462 288 CNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 319 (795)
Q Consensus 288 l~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~ 319 (795)
+.+++++++.||||||||++|++|++..+...
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~ 36 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR 36 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999998866544
No 135
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.03 E-value=0.0038 Score=68.74 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=27.4
Q ss_pred hccccCcEEEeCCCCCChhHHHHHHHHHHHHH
Q psy3462 287 GCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 318 (795)
Q Consensus 287 al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~ 318 (795)
++.+++++++.||||||||++|++|++..+..
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~ 48 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ 48 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35567899999999999999999999876653
No 136
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=95.83 E-value=0.0062 Score=73.17 Aligned_cols=45 Identities=31% Similarity=0.358 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHH
Q psy3462 247 PVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 318 (795)
Q Consensus 247 py~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~ 318 (795)
+++|||.|.+.+..+. +++++++.+|||+|||++|++|++..+..
T Consensus 246 ~~~~r~~Q~~ai~~il---------------------------~g~~~ll~a~TGsGKTl~~~~~i~~~l~~ 290 (936)
T 4a2w_A 246 TKKARSYQIELAQPAI---------------------------NGKNALICAPTGSGKTFVSILICEHHFQN 290 (936)
T ss_dssp --CCCHHHHHHHHHHH---------------------------TTCCEEEECCTTSCHHHHHHHHHHTTTTT
T ss_pred CCCCCHHHHHHHHHHH---------------------------cCCCEEEEeCCCchHHHHHHHHHHHHHHh
Confidence 4689999999887763 24679999999999999999998877654
No 137
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.79 E-value=0.004 Score=68.34 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=26.5
Q ss_pred Hhhcc-ccCcEEEeCCCCCChhHHHHHHHHHHHHHh
Q psy3462 285 IQGCN-KAKNCLLESPTGSGKTLALLCSVLAWQRKE 319 (795)
Q Consensus 285 i~al~-~~~~~l~EaPTGTGKTlayL~~~l~~~~~~ 319 (795)
|+.+. .+.++++.||||||||++|++|+|..+...
T Consensus 12 i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~ 47 (451)
T 2jlq_A 12 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR 47 (451)
T ss_dssp CGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT
T ss_pred HHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc
Confidence 44443 345569999999999999999998765443
No 138
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=95.79 E-value=0.0073 Score=73.60 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=35.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHH
Q psy3462 246 FPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 318 (795)
Q Consensus 246 fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~ 318 (795)
++|+| |.|.+.+..+. .++++++.||||||||+ |++|++..+..
T Consensus 54 ~g~~p-~iQ~~ai~~il---------------------------~g~dvlv~apTGSGKTl-~~lp~l~~~~~ 97 (1054)
T 1gku_B 54 VGEPR-AIQKMWAKRIL---------------------------RKESFAATAPTGVGKTS-FGLAMSLFLAL 97 (1054)
T ss_dssp TCSCC-HHHHHHHHHHH---------------------------TTCCEECCCCBTSCSHH-HHHHHHHHHHT
T ss_pred cCCCH-HHHHHHHHHHH---------------------------hCCCEEEEcCCCCCHHH-HHHHHHHHHhh
Confidence 55667 88888877753 25789999999999998 88888877654
No 139
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.75 E-value=0.0038 Score=68.22 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.5
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHHH
Q psy3462 39 AKNCLLESPTGSGKTLALLCSVLAWQ 64 (795)
Q Consensus 39 ~~~~llEAPTGTGKTLAyL~paL~~~ 64 (795)
++++++.||||+|||++|++|++..+
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~ 27 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREA 27 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998655
No 140
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=95.75 E-value=0.0059 Score=70.38 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=30.2
Q ss_pred HhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHh
Q psy3462 285 IQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 319 (795)
Q Consensus 285 i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~ 319 (795)
++.+.+++++++.||||||||++|++|+|..+...
T Consensus 180 i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~ 214 (618)
T 2whx_A 180 EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR 214 (618)
T ss_dssp GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT
T ss_pred HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC
Confidence 56677889999999999999999999998776543
No 141
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.70 E-value=0.0038 Score=69.35 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHH
Q psy3462 249 KAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRK 318 (795)
Q Consensus 249 ~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~ 318 (795)
.|+|.|.+.+..+.+. .++++++.||||||||++|+.+++..+..
T Consensus 141 ~p~~~Q~~ai~~i~~~-------------------------~~~~~ll~apTGsGKT~~~~~~il~~l~~ 185 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN-------------------------PPRNMIGQSQSGTGKTAAFALTMLSRVDA 185 (508)
T ss_dssp ECCCTTSSSHHHHHCS-------------------------SCCCEEEECCSSTTSHHHHHHHHHHHSCT
T ss_pred CcHHHHHHHHHHHHcC-------------------------CCCCEEEECCCCccHHHHHHHHHHHHHHh
Confidence 4788888777665421 13789999999999999999998877644
No 142
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.70 E-value=0.0069 Score=60.25 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=26.9
Q ss_pred HHHhhccccCcEEEeCCCCCChhHHHHHHHHHHH
Q psy3462 283 QVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 316 (795)
Q Consensus 283 ~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~ 316 (795)
++++++.+++++++.||||+|||..+.++++...
T Consensus 68 ~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~ 101 (235)
T 3llm_A 68 EILEAISQNSVVIIRGATGCGKTTQVPQFILDDF 101 (235)
T ss_dssp HHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcch
Confidence 4555666788999999999999998887765543
No 143
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=95.54 E-value=0.009 Score=71.40 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=32.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHH
Q psy3462 246 FPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 316 (795)
Q Consensus 246 fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~ 316 (795)
..|.|+|.|..-+-.+. .|+ +.||+||+|||++|++|++..+
T Consensus 80 lG~~pt~VQ~~~ip~ll---------------------------~G~--Iaea~TGeGKTlaf~LP~~l~a 121 (844)
T 1tf5_A 80 TGMFPFKVQLMGGVALH---------------------------DGN--IAEMKTGEGKTLTSTLPVYLNA 121 (844)
T ss_dssp HSCCCCHHHHHHHHHHH---------------------------TTS--EEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHhhHHHh---------------------------CCC--EEEccCCcHHHHHHHHHHHHHH
Confidence 45689999987665442 244 8899999999999999997443
No 144
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.41 E-value=0.0087 Score=65.41 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=29.8
Q ss_pred cCcEEEeCCCCCChhHHHHHHHHHHHHHhh---------HHHHHHHHh
Q psy3462 291 AKNCLLESPTGSGKTLALLCSVLAWQRKEK---------ELVQQKMFE 329 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTlayL~~~l~~~~~~~---------k~LQ~Ql~~ 329 (795)
++++++.||||+|||++|+.|++..+...+ +.|-+|+.+
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~ 49 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYE 49 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHH
Confidence 578999999999999999999985544433 256666654
No 145
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=95.07 E-value=0.011 Score=68.93 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=26.6
Q ss_pred cccCcEEEeCCCCCChhHHHHHHHHHHHHHh
Q psy3462 289 NKAKNCLLESPTGSGKTLALLCSVLAWQRKE 319 (795)
Q Consensus 289 ~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~ 319 (795)
.+++++++.||||||||++|++|++..+...
T Consensus 239 ~~g~dvlv~apTGSGKTl~~ll~il~~l~~~ 269 (673)
T 2wv9_A 239 KKRQLTVLDLHPGAGKTRRILPQIIKDAIQK 269 (673)
T ss_dssp STTCEEEECCCTTTTTTTTHHHHHHHHHHHT
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 3678999999999999999999998775443
No 146
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=94.91 E-value=0.018 Score=70.30 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHHhc----------CCcEEEECCCCCchHHHHHHHHHHH
Q psy3462 19 FLKYSSCKILHLQVIQGCNK----------AKNCLLESPTGSGKTLALLCSVLAW 63 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~----------~~~~llEAPTGTGKTLAyL~paL~~ 63 (795)
..|||.|.+.+..+.+.+.. +.++++.+|||||||+++ ++++..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~l 323 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARL 323 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHH
Confidence 46999999999999888753 367999999999999997 565544
No 147
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=94.68 E-value=0.041 Score=60.08 Aligned_cols=40 Identities=15% Similarity=-0.118 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHH
Q psy3462 20 LKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCS 59 (795)
Q Consensus 20 ~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~p 59 (795)
.+||.|.+.+..+......+.++|+-+|||+|||+..+..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~ 76 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAV 76 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHH
Confidence 5889999988877777777889999999999999886543
No 148
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=94.47 E-value=0.028 Score=67.24 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=32.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHH
Q psy3462 246 FPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 316 (795)
Q Consensus 246 fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~ 316 (795)
....|+|.|..-+-.+. .|+ +.||+||||||++|++|++..+
T Consensus 71 lg~~p~~VQ~~~i~~ll---------------------------~G~--Iaem~TGsGKTlaf~LP~l~~~ 112 (853)
T 2fsf_A 71 FGMRHFDVQLLGGMVLN---------------------------ERC--IAEMRTGEGKTLTATLPAYLNA 112 (853)
T ss_dssp HSCCCCHHHHHHHHHHH---------------------------SSE--EEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCCChHHHhhccccc---------------------------CCe--eeeecCCchHHHHHHHHHHHHH
Confidence 45788999987665431 244 8999999999999999997544
No 149
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=94.43 E-value=0.026 Score=67.91 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=33.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 246 FPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 246 fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
..+.|+|.|..-+-.+. .|+ +.||+||+|||+++++|++..+.
T Consensus 108 lG~rP~~VQ~~~ip~Ll---------------------------~G~--Iaem~TGeGKTLa~~LP~~l~aL 150 (922)
T 1nkt_A 108 LDQRPFDVQVMGAAALH---------------------------LGN--VAEMKTGEGKTLTCVLPAYLNAL 150 (922)
T ss_dssp HSCCCCHHHHHHHHHHH---------------------------TTE--EEECCTTSCHHHHTHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHhHh---------------------------cCC--EEEecCCCccHHHHHHHHHHHHH
Confidence 45789999987665432 233 99999999999999999965443
No 150
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.72 E-value=0.006 Score=71.30 Aligned_cols=33 Identities=24% Similarity=0.191 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCcEEEECCCCCchHHHHHHHHHH
Q psy3462 30 LQVIQGCNKAKNCLLESPTGSGKTLALLCSVLA 62 (795)
Q Consensus 30 ~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~ 62 (795)
+++..++.+++++++.||||+|||++|++|++.
T Consensus 223 ~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~ 255 (666)
T 3o8b_A 223 SSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA 255 (666)
T ss_dssp CSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH
Confidence 556677778889999999999999999998764
No 151
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.57 E-value=0.043 Score=64.87 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHH
Q psy3462 19 FLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLA 62 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~ 62 (795)
..|.+.|+ +++..++.+++++++.||||+|||+ ++|.+.
T Consensus 92 ~lP~~~q~---~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll 130 (773)
T 2xau_A 92 ELPVHAQR---DEFLKLYQNNQIMVFVGETGSGKTT--QIPQFV 130 (773)
T ss_dssp TSGGGGGH---HHHHHHHHHCSEEEEECCTTSSHHH--HHHHHH
T ss_pred cCChHHHH---HHHHHHHhCCCeEEEECCCCCCHHH--HHHHHH
Confidence 46777774 4556667788899999999999998 788763
No 152
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.53 E-value=0.13 Score=56.45 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCC-cEEEECCCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCceeEEeccccc
Q psy3462 18 YFLKYSSCKILHLQVIQGCNKAK-NCLLESPTGSGKTLALLCSVLAWQRKEKELVQQKMFEQRTQDLQKTSFVFCGRSDF 96 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~al~~~~-~~llEAPTGTGKTLAyL~paL~~~~~~~~~vq~~~~~~~~~~~~~~~~~yc~rth~ 96 (795)
+-.+.+.|++.+..+...+.++. +++|.||.|||||. .+...+.++... +...++.|+-|+.
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~-ll~~~~~~l~~~----------------~~~~il~~a~T~~ 85 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATT-LTKFIIEALIST----------------GETGIILAAPTHA 85 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHH-HHHHHHHHHHHT----------------TCCCEEEEESSHH
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHH-HHHHHHHHHHhc----------------CCceEEEecCcHH
Confidence 33455899999999988888766 89999999999993 333333333322 1245777777765
Q ss_pred cc
Q psy3462 97 FL 98 (795)
Q Consensus 97 ~l 98 (795)
..
T Consensus 86 Aa 87 (459)
T 3upu_A 86 AK 87 (459)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 153
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=93.08 E-value=0.11 Score=56.56 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=34.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHH
Q psy3462 245 EFPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSV 312 (795)
Q Consensus 245 ~fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~ 312 (795)
.+..++||.|.+.+..+...... +..+++..|||+|||+..+..+
T Consensus 33 ~~~~~L~~~Q~~~v~~l~~~~~~-----------------------~~~~ilad~~GlGKT~~ai~~i 77 (500)
T 1z63_A 33 NIKANLRPYQIKGFSWMRFMNKL-----------------------GFGICLADDMGLGKTLQTIAVF 77 (500)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHHT-----------------------TCCEEECCCTTSCHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHhhC-----------------------CCCEEEEeCCCCcHHHHHHHHH
Confidence 34567999999998877544432 4678999999999999876543
No 154
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=92.66 E-value=0.077 Score=64.15 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=32.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHH
Q psy3462 246 FPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 316 (795)
Q Consensus 246 fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~ 316 (795)
..|.|+|.|..-+-.+. .|. +.||.||+|||+++++|++..+
T Consensus 76 lG~~Pt~VQ~~~ip~Ll---------------------------qG~--IaeakTGeGKTLvf~Lp~~L~a 117 (997)
T 2ipc_A 76 LGMRHFDVQLIGGAVLH---------------------------EGK--IAEMKTGEGKTLVATLAVALNA 117 (997)
T ss_dssp TCCCCCHHHHHHHHHHH---------------------------TTS--EEECCSTHHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHhhccccc---------------------------CCc--eeeccCCCchHHHHHHHHHHHH
Confidence 56799999987765432 244 8999999999999999995433
No 155
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=92.52 E-value=0.11 Score=61.84 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=33.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 17 NYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 17 ~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
-+..||+.| +|-.+ +|+.|+ |.|..||.||||++.+|++..+.
T Consensus 72 lg~r~~dvQ--ligg~--~L~~G~--iaEM~TGEGKTLva~lp~~lnAL 114 (822)
T 3jux_A 72 LGMRPFDVQ--VMGGI--ALHEGK--VAEMKTGEGKTLAATMPIYLNAL 114 (822)
T ss_dssp TSCCCCHHH--HHHHH--HHHTTC--EEECCTTSCHHHHTHHHHHHHHT
T ss_pred hCCCCcHHH--HHHHH--HHhCCC--hhhccCCCCccHHHHHHHHHHHh
Confidence 366899999 44443 566665 99999999999999999876554
No 156
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=91.93 E-value=0.048 Score=63.76 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=25.6
Q ss_pred HHhhccccCcEEEeCCCCCChhHHHHHHHHH
Q psy3462 284 VIQGCNKAKNCLLESPTGSGKTLALLCSVLA 314 (795)
Q Consensus 284 ~i~al~~~~~~l~EaPTGTGKTlayL~~~l~ 314 (795)
+++++.+++++++.||||+|||++++.+++.
T Consensus 225 i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~ 255 (666)
T 3o8b_A 225 PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA 255 (666)
T ss_dssp CCCCCSSCEEEEEECCTTSCTTTHHHHHHHH
T ss_pred HHHHHHcCCeEEEEeCCchhHHHHHHHHHHH
Confidence 4455667889999999999999999987653
No 157
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.61 E-value=0.22 Score=57.13 Aligned_cols=56 Identities=20% Similarity=0.343 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCceeEEecccccccc
Q psy3462 23 SSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELVQQKMFEQRTQDLQKTSFVFCGRSDFFLL 99 (795)
Q Consensus 23 ~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~~~~vq~~~~~~~~~~~~~~~~~yc~rth~~l~ 99 (795)
+.|. ++|..++......||.||.|||||-.. +-++.++ +. .+.+|+.|+-||..+.
T Consensus 192 ~~Q~---~AV~~al~~~~~~lI~GPPGTGKT~ti-~~~I~~l---------------~~--~~~~ILv~a~TN~AvD 247 (646)
T 4b3f_X 192 TSQK---EAVLFALSQKELAIIHGPPGTGKTTTV-VEIILQA---------------VK--QGLKVLCCAPSNIAVD 247 (646)
T ss_dssp HHHH---HHHHHHHHCSSEEEEECCTTSCHHHHH-HHHHHHH---------------HH--TTCCEEEEESSHHHHH
T ss_pred HHHH---HHHHHHhcCCCceEEECCCCCCHHHHH-HHHHHHH---------------Hh--CCCeEEEEcCchHHHH
Confidence 6774 466667777778999999999999542 2222221 11 2468999999998763
No 158
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.22 E-value=0.17 Score=46.63 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCcEEEECCCCCchH
Q psy3462 27 ILHLQVIQGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 27 ~mm~~i~~al~~~~~~llEAPTGTGKT 53 (795)
++.+.+..+...+.+++|.+|+|||||
T Consensus 12 ~~~~~~~~~a~~~~~vll~G~~GtGKt 38 (145)
T 3n70_A 12 QYRRRLQQLSETDIAVWLYGAPGTGRM 38 (145)
T ss_dssp HHHHHHHHHTTCCSCEEEESSTTSSHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHH
Confidence 444555555567789999999999999
No 159
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=91.16 E-value=0.14 Score=62.60 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHH
Q psy3462 248 VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQ 316 (795)
Q Consensus 248 y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~ 316 (795)
..|||.|...+..+.+.+.... ..-..-..++.+++.+|||||||++. ++++.++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~-------------~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll 324 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSF-------------TAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLA 324 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHH-------------HHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcc-------------cccccccCCCCEEEEecCCCCHHHHH-HHHHHHH
Confidence 4699999999999887664210 00000012357999999999999997 5544443
No 160
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=90.77 E-value=0.17 Score=58.00 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHHhcCCcEEEECCCCCchH--HHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCceeEEeccccccc
Q psy3462 22 YSSCKILHLQVIQGCNKAKNCLLESPTGSGKT--LALLCSVLAWQRKEKELVQQKMFEQRTQDLQKTSFVFCGRSDFFL 98 (795)
Q Consensus 22 ~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKT--LAyL~paL~~~~~~~~~vq~~~~~~~~~~~~~~~~~yc~rth~~l 98 (795)
.+.|++.+.. +..+..+++.||+||||| ++++++.+... ....+.+++.|+.|+...
T Consensus 151 ~~~Q~~Ai~~----~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~----------------~~~~~~~vll~APTg~AA 209 (608)
T 1w36_D 151 INWQKVAAAV----ALTRRISVISGGPGTGKTTTVAKLLAALIQM----------------ADGERCRIRLAAPTGKAA 209 (608)
T ss_dssp CCHHHHHHHH----HHTBSEEEEECCTTSTHHHHHHHHHHHHHHT----------------CSSCCCCEEEEBSSHHHH
T ss_pred CHHHHHHHHH----HhcCCCEEEEeCCCCCHHHHHHHHHHHHHHh----------------hhcCCCeEEEEeCChhHH
Confidence 4678554443 335789999999999999 88888876532 112345777887776643
No 161
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.67 E-value=0.12 Score=53.48 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchH
Q psy3462 7 DIFKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKT 53 (795)
.++..+...... ..-+|.+.+..+..++..+.+++|.||+|||||
T Consensus 16 ~~~~~~~~~~~~--~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT 60 (331)
T 2r44_A 16 NKIKEVIDEVGK--VVVGQKYMINRLLIGICTGGHILLEGVPGLAKT 60 (331)
T ss_dssp HHHHHHHHHHTT--TCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHH
T ss_pred HHHHHHHHHhcc--ceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHH
Confidence 445555554332 345677888888888888999999999999999
No 162
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.64 E-value=0.17 Score=46.58 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCcEEEECCCCCchH
Q psy3462 27 ILHLQVIQGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 27 ~mm~~i~~al~~~~~~llEAPTGTGKT 53 (795)
++.+.+..+...+.+++|.+|+|||||
T Consensus 15 ~l~~~~~~~~~~~~~vll~G~~GtGKt 41 (143)
T 3co5_A 15 EMNREVEAAAKRTSPVFLTGEAGSPFE 41 (143)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETTCCHH
T ss_pred HHHHHHHHHhCCCCcEEEECCCCccHH
Confidence 344455555566789999999999999
No 163
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=90.32 E-value=0.3 Score=59.09 Aligned_cols=44 Identities=18% Similarity=0.038 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHH
Q psy3462 18 YFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAW 63 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~ 63 (795)
.+.|+|.|.+.+..+.. .....+|+-+|||+|||+.++..+...
T Consensus 151 ~~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l 194 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQ 194 (968)
T ss_dssp SSCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999876665544 224578999999999999987775444
No 164
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.21 E-value=0.28 Score=46.81 Aligned_cols=32 Identities=19% Similarity=0.020 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhcC------CcEEEECCCCCchHH
Q psy3462 23 SSCKILHLQVIQGCNKA------KNCLLESPTGSGKTL 54 (795)
Q Consensus 23 ~~Q~~mm~~i~~al~~~------~~~llEAPTGTGKTL 54 (795)
+.|.+.++.+.+.+.+. .+++|.+|+|||||.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~ 69 (202)
T 2w58_A 32 DGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTY 69 (202)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHH
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHH
Confidence 46767777777777654 689999999999994
No 165
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.32 E-value=0.37 Score=45.36 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=26.9
Q ss_pred CCCC-CHHHHHHHHHHHHHHh-----cCCcEEEECCCCCchH
Q psy3462 18 YFLK-YSSCKILHLQVIQGCN-----KAKNCLLESPTGSGKT 53 (795)
Q Consensus 18 ~~~p-~~~Q~~mm~~i~~al~-----~~~~~llEAPTGTGKT 53 (795)
.|.| .+.|.+.++.+.+.+. .+..++|.+|+|||||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKT 52 (180)
T 3ec2_A 11 TYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKT 52 (180)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHH
T ss_pred cccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHH
Confidence 4445 4678777777666553 3678999999999999
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.92 E-value=0.28 Score=44.80 Aligned_cols=34 Identities=24% Similarity=0.128 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHHhcC--CcEEEECCCCCchHH
Q psy3462 21 KYSSCKILHLQVIQGCNKA--KNCLLESPTGSGKTL 54 (795)
Q Consensus 21 p~~~Q~~mm~~i~~al~~~--~~~llEAPTGTGKTL 54 (795)
..-++.+.++.+.+.+..+ .+++|.||+|||||.
T Consensus 23 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~ 58 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTA 58 (195)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHH
T ss_pred ccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHH
Confidence 3344455667777777654 579999999999993
No 167
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=88.40 E-value=0.57 Score=55.24 Aligned_cols=43 Identities=16% Similarity=-0.060 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHH
Q psy3462 19 FLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVL 61 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL 61 (795)
..+||.|.+-+..+......+.++||-.+||+|||+..+..+.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~ 277 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFIS 277 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHH
Confidence 4678999999998888888999999999999999988766543
No 168
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=88.38 E-value=0.55 Score=54.00 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHh-----cCCcEEEECCCCCchHHHHHHHHHHH
Q psy3462 20 LKYSSCKILHLQVIQGCN-----KAKNCLLESPTGSGKTLALLCSVLAW 63 (795)
Q Consensus 20 ~p~~~Q~~mm~~i~~al~-----~~~~~llEAPTGTGKTLAyL~paL~~ 63 (795)
.+||.|.+-+..+++.+. ++..+|+-.+||+|||+..+..+...
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l 103 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTL 103 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHH
Confidence 578999999998888874 45679999999999998877665443
No 169
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.28 E-value=0.67 Score=50.85 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=37.5
Q ss_pred cCCC-CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHh
Q psy3462 246 FPVK-AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 319 (795)
Q Consensus 246 fpy~-~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~ 319 (795)
.+|. .-+.|.+.+..+.+.+.++ .++.++.||.|||||. .+...+.++...
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~----------------------~~~~li~G~aGTGKT~-ll~~~~~~l~~~ 72 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEK----------------------KHHVTINGPAGTGATT-LTKFIIEALIST 72 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSS----------------------SCEEEEECCTTSCHHH-HHHHHHHHHHHT
T ss_pred CccccCCHHHHHHHHHHHHHHhcC----------------------CCEEEEEeCCCCCHHH-HHHHHHHHHHhc
Confidence 3453 6789999999988877642 3489999999999995 445556666543
No 170
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=87.93 E-value=0.5 Score=57.13 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=36.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHHHh
Q psy3462 246 FPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKE 319 (795)
Q Consensus 246 fpy~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~~~ 319 (795)
.++++||.|.+.+..+.. + .+..+++.+|||+|||+.++..+.......
T Consensus 150 ~~~~LrpyQ~eav~~~l~---~----------------------~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g 198 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGR---R----------------------HAPRVLLADEVGLGKTIEAGMILHQQLLSG 198 (968)
T ss_dssp CSSCCCHHHHHHHHHHHH---S----------------------SSCEEEECCCTTSCHHHHHHHHHHHHHHTS
T ss_pred CCCCCcHHHHHHHHHHHH---h----------------------cCCCEEEECCCCCcHHHHHHHHHHHHHHhC
Confidence 458899999998776543 2 135689999999999999988765555433
No 171
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=87.52 E-value=0.26 Score=55.68 Aligned_cols=45 Identities=9% Similarity=0.044 Sum_probs=34.6
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchH
Q psy3462 7 DIFKTYLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKT 53 (795)
+.+..+.+.+.. -.-+|.+.++.+..++..+.+++|.||+|||||
T Consensus 11 ~~~~~l~~~l~~--~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT 55 (500)
T 3nbx_X 11 ERISRLSSSLEK--GLYERSHAIRLCLLAALSGESVFLLGPPGIAKS 55 (500)
T ss_dssp HHHHHHHHHHHT--TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHH
T ss_pred HHHHHHHHHHHh--hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHH
Confidence 445555554432 234677888999999999999999999999999
No 172
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.42 E-value=0.29 Score=46.09 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhcCC---cEEEECCCCCchHH
Q psy3462 23 SSCKILHLQVIQGCNKAK---NCLLESPTGSGKTL 54 (795)
Q Consensus 23 ~~Q~~mm~~i~~al~~~~---~~llEAPTGTGKTL 54 (795)
-++.+.++.+...+..+. .++|.||+|||||.
T Consensus 26 ~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~ 60 (250)
T 1njg_A 26 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTS 60 (250)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHH
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHH
Confidence 445566777777777765 58999999999993
No 173
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.35 E-value=0.3 Score=44.76 Aligned_cols=32 Identities=25% Similarity=0.176 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHhc--CCcEEEECCCCCchH
Q psy3462 22 YSSCKILHLQVIQGCNK--AKNCLLESPTGSGKT 53 (795)
Q Consensus 22 ~~~Q~~mm~~i~~al~~--~~~~llEAPTGTGKT 53 (795)
.-++...++.+.+.+.. ..+++|.+|+|||||
T Consensus 24 ~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT 57 (187)
T 2p65_A 24 VIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKT 57 (187)
T ss_dssp CCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHH
T ss_pred hhcchHHHHHHHHHHhCCCCCceEEECCCCCCHH
Confidence 33445556677777755 457999999999999
No 174
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.34 E-value=0.75 Score=48.17 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhc-----CCcEEEECCCCCchH
Q psy3462 24 SCKILHLQVIQGCNK-----AKNCLLESPTGSGKT 53 (795)
Q Consensus 24 ~Q~~mm~~i~~al~~-----~~~~llEAPTGTGKT 53 (795)
.+.+.++.+.+.+.+ +.+++|.||||||||
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT 166 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKS 166 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHH
Confidence 555566666666664 578999999999999
No 175
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=87.13 E-value=0.59 Score=43.96 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=29.5
Q ss_pred CCC-CHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhH
Q psy3462 248 VKA-YPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTL 306 (795)
Q Consensus 248 y~~-yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTl 306 (795)
|.+ .+.|...+..+.+.++.- .+..+.++++-||+|||||.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~~g~~~~l~G~~G~GKTt 53 (180)
T 3ec2_A 12 YHPKNVSQNRALLTIRVFVHNF------------------NPEEGKGLTFVGSPGVGKTH 53 (180)
T ss_dssp CCCCSHHHHHHHHHHHHHHHSC------------------CGGGCCEEEECCSSSSSHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhc------------------cccCCCEEEEECCCCCCHHH
Confidence 544 578888888877666531 01246789999999999995
No 176
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=86.96 E-value=0.76 Score=52.70 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCceeEEecccccccc
Q psy3462 22 YSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELVQQKMFEQRTQDLQKTSFVFCGRSDFFLL 99 (795)
Q Consensus 22 ~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~~~~vq~~~~~~~~~~~~~~~~~yc~rth~~l~ 99 (795)
-+.|.+.+..+ + .+...+|.||+|||||.... .++.++. ...+.+++.|+-||....
T Consensus 182 n~~Q~~av~~~---l-~~~~~li~GppGTGKT~~~~-~~i~~l~----------------~~~~~~ilv~a~tn~A~~ 238 (624)
T 2gk6_A 182 NHSQVYAVKTV---L-QRPLSLIQGPPGTGKTVTSA-TIVYHLA----------------RQGNGPVLVCAPSNIAVD 238 (624)
T ss_dssp CHHHHHHHHHH---H-TCSEEEEECCTTSCHHHHHH-HHHHHHH----------------TSSSCCEEEEESSHHHHH
T ss_pred CHHHHHHHHHH---h-cCCCeEEECCCCCCHHHHHH-HHHHHHH----------------HcCCCeEEEEeCcHHHHH
Confidence 37785555443 3 35689999999999995322 1222111 114578999999987754
No 177
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.55 E-value=0.39 Score=44.91 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhcC--CcEEEECCCCCchHH
Q psy3462 23 SSCKILHLQVIQGCNKA--KNCLLESPTGSGKTL 54 (795)
Q Consensus 23 ~~Q~~mm~~i~~al~~~--~~~llEAPTGTGKTL 54 (795)
-++.+.++.+.+.+..+ .+++|.||+|||||.
T Consensus 20 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~ 53 (226)
T 2chg_A 20 VGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTA 53 (226)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHH
T ss_pred cCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHH
Confidence 34556677777777765 359999999999993
No 178
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.32 E-value=0.39 Score=48.34 Aligned_cols=15 Identities=60% Similarity=0.860 Sum_probs=13.8
Q ss_pred CCcEEEECCCCCchH
Q psy3462 39 AKNCLLESPTGSGKT 53 (795)
Q Consensus 39 ~~~~llEAPTGTGKT 53 (795)
..+++|.||+|||||
T Consensus 50 ~~~vll~G~~GtGKT 64 (310)
T 1ofh_A 50 PKNILMIGPTGVGKT 64 (310)
T ss_dssp CCCEEEECCTTSSHH
T ss_pred CceEEEECCCCCCHH
Confidence 567999999999999
No 179
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.21 E-value=0.42 Score=50.45 Aligned_cols=17 Identities=65% Similarity=0.827 Sum_probs=14.6
Q ss_pred cCCcEEEECCCCCchHH
Q psy3462 38 KAKNCLLESPTGSGKTL 54 (795)
Q Consensus 38 ~~~~~llEAPTGTGKTL 54 (795)
...+++|.+|+|||||.
T Consensus 50 ~~~~vll~GppGtGKT~ 66 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTL 66 (363)
T ss_dssp CCCCEEEECCTTSSHHH
T ss_pred CCCeEEEECCCCCCHHH
Confidence 34679999999999994
No 180
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=86.13 E-value=0.4 Score=56.74 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=22.3
Q ss_pred HHhhccccCcEEEeCCCCCChhHHHHHHHHH
Q psy3462 284 VIQGCNKAKNCLLESPTGSGKTLALLCSVLA 314 (795)
Q Consensus 284 ~i~al~~~~~~l~EaPTGTGKTlayL~~~l~ 314 (795)
+..++..++++++.||||+|||+ ++|.+.
T Consensus 102 i~~~l~~~~~vii~gpTGSGKTt--llp~ll 130 (773)
T 2xau_A 102 FLKLYQNNQIMVFVGETGSGKTT--QIPQFV 130 (773)
T ss_dssp HHHHHHHCSEEEEECCTTSSHHH--HHHHHH
T ss_pred HHHHHhCCCeEEEECCCCCCHHH--HHHHHH
Confidence 44445567889999999999999 566653
No 181
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.06 E-value=0.5 Score=47.24 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCcEEEECCCCCchH
Q psy3462 27 ILHLQVIQGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 27 ~mm~~i~~al~~~~~~llEAPTGTGKT 53 (795)
++.+.+..+...+.+++|.||+|||||
T Consensus 17 ~~~~~~~~~~~~~~~vll~G~~GtGKt 43 (265)
T 2bjv_A 17 EVLEQVSHLAPLDKPVLIIGERGTGKE 43 (265)
T ss_dssp HHHHHHHHHTTSCSCEEEECCTTSCHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHH
Confidence 444555555566788999999999999
No 182
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.88 E-value=0.44 Score=43.43 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.6
Q ss_pred cCcEEEeCCCCCChhHH
Q psy3462 291 AKNCLLESPTGSGKTLA 307 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTla 307 (795)
..++++.||+|||||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999953
No 183
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.60 E-value=0.72 Score=42.36 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=15.0
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.+.++++.||+|||||.
T Consensus 23 ~~~~vll~G~~GtGKt~ 39 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMT 39 (145)
T ss_dssp CCSCEEEESSTTSSHHH
T ss_pred CCCCEEEECCCCCCHHH
Confidence 45789999999999995
No 184
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=85.42 E-value=0.4 Score=56.08 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=21.7
Q ss_pred HHHHHHhccCccccccCc--eeEEEEeec
Q psy3462 624 AYRALNQALGRCIRHRYD--WGAILLVDQ 650 (795)
Q Consensus 624 AmRaVNQAIGRvIRHknD--yGaIiLlD~ 650 (795)
......|.+||+=|...+ -|.++++..
T Consensus 415 s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 415 TTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp CHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred CHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 356778999999999876 578888864
No 185
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.39 E-value=0.58 Score=44.83 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhc--CCcEEEECCCCCchH
Q psy3462 25 CKILHLQVIQGCNK--AKNCLLESPTGSGKT 53 (795)
Q Consensus 25 Q~~mm~~i~~al~~--~~~~llEAPTGTGKT 53 (795)
+.+.++.+...+.. +..++|.||+|||||
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT 66 (242)
T 3bos_A 36 NDELIGALKSAASGDGVQAIYLWGPVKSGRT 66 (242)
T ss_dssp CHHHHHHHHHHHHTCSCSEEEEECSTTSSHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECCCCCCHH
Confidence 34566666666654 567999999999999
No 186
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=85.29 E-value=0.49 Score=54.29 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.0
Q ss_pred cCcEEEeCCCCCChh--HHHHHHHHH
Q psy3462 291 AKNCLLESPTGSGKT--LALLCSVLA 314 (795)
Q Consensus 291 ~~~~l~EaPTGTGKT--layL~~~l~ 314 (795)
++++++.||+||||| ++++++.+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 578999999999999 777777654
No 187
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=85.00 E-value=0.49 Score=55.37 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=15.4
Q ss_pred cCCcEEEECCCCCchHH
Q psy3462 38 KAKNCLLESPTGSGKTL 54 (795)
Q Consensus 38 ~~~~~llEAPTGTGKTL 54 (795)
+++++++.||||+|||+
T Consensus 154 ~rk~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY 170 (677)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCCHHH
Confidence 56789999999999997
No 188
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=84.45 E-value=0.66 Score=46.91 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHhcCC--cEEEECCCCCchHH
Q psy3462 22 YSSCKILHLQVIQGCNKAK--NCLLESPTGSGKTL 54 (795)
Q Consensus 22 ~~~Q~~mm~~i~~al~~~~--~~llEAPTGTGKTL 54 (795)
.-+|.+.++.+...+..+. +++|.||+|||||.
T Consensus 27 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~ 61 (327)
T 1iqp_A 27 IVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTT 61 (327)
T ss_dssp CCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHH
T ss_pred hhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHH
Confidence 3567777888888887765 79999999999993
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.50 E-value=0.48 Score=43.38 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=14.2
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
..++++.||+|||||.
T Consensus 43 ~~~vll~G~~G~GKT~ 58 (187)
T 2p65_A 43 KNNPILLGDPGVGKTA 58 (187)
T ss_dssp SCEEEEESCGGGCHHH
T ss_pred CCceEEECCCCCCHHH
Confidence 4678999999999995
No 190
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.73 E-value=0.51 Score=47.80 Aligned_cols=31 Identities=29% Similarity=0.282 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhcC-----------CcEEEECCCCCchHH
Q psy3462 24 SCKILHLQVIQGCNKA-----------KNCLLESPTGSGKTL 54 (795)
Q Consensus 24 ~Q~~mm~~i~~al~~~-----------~~~llEAPTGTGKTL 54 (795)
+|...++.+..++... .+++|.+|+|||||.
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~ 62 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTE 62 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHH
Confidence 4555556666655543 469999999999993
No 191
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.11 E-value=0.51 Score=48.46 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHHhcC--CcEEEECCCCCchHH
Q psy3462 22 YSSCKILHLQVIQGCNKA--KNCLLESPTGSGKTL 54 (795)
Q Consensus 22 ~~~Q~~mm~~i~~al~~~--~~~llEAPTGTGKTL 54 (795)
.-+|.+.++.+...+..+ .+++|.||+|||||.
T Consensus 39 i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~ 73 (353)
T 1sxj_D 39 VTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTS 73 (353)
T ss_dssp CCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHH
T ss_pred hhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHH
Confidence 356667788888888887 679999999999993
No 192
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.93 E-value=0.7 Score=42.45 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=14.8
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.+.++++.||+|||||.
T Consensus 26 ~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFET 42 (143)
T ss_dssp CSSCEEEEEETTCCHHH
T ss_pred CCCcEEEECCCCccHHH
Confidence 35789999999999995
No 193
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.80 E-value=0.91 Score=47.32 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCcEEEECCCCCchHH
Q psy3462 27 ILHLQVIQGCNKAKNCLLESPTGSGKTL 54 (795)
Q Consensus 27 ~mm~~i~~al~~~~~~llEAPTGTGKTL 54 (795)
++++.+..+...+.+++|.+|||||||+
T Consensus 13 ~~~~~~~~~a~~~~~vLi~Ge~GtGKt~ 40 (304)
T 1ojl_A 13 HLLNEIAMVAPSDATVLIHGDSGTGKEL 40 (304)
T ss_dssp HHHHHHHHHCSTTSCEEEESCTTSCHHH
T ss_pred HHHHHHHHHhCCCCcEEEECCCCchHHH
Confidence 4444455555567789999999999994
No 194
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=81.50 E-value=0.85 Score=48.68 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=23.4
Q ss_pred HHHH-HHHHHHHHHHhcC--CcEEEECCCCCchHH
Q psy3462 23 SSCK-ILHLQVIQGCNKA--KNCLLESPTGSGKTL 54 (795)
Q Consensus 23 ~~Q~-~mm~~i~~al~~~--~~~llEAPTGTGKTL 54 (795)
..|. ++...+..++..+ .+++|-||+|||||.
T Consensus 26 e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~ 60 (318)
T 3te6_A 26 VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQ 60 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHH
Confidence 4454 5555777777554 569999999999993
No 195
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=81.48 E-value=0.68 Score=47.78 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhc----C---CcEEEECCCCCchHH
Q psy3462 23 SSCKILHLQVIQGCNK----A---KNCLLESPTGSGKTL 54 (795)
Q Consensus 23 ~~Q~~mm~~i~~al~~----~---~~~llEAPTGTGKTL 54 (795)
-+|...++.+...+.. + .+++|.||+|||||.
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~ 70 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTT 70 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHH
Confidence 3455555555555543 2 479999999999994
No 196
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=81.23 E-value=0.93 Score=42.30 Aligned_cols=15 Identities=40% Similarity=0.724 Sum_probs=13.4
Q ss_pred CcEEEeCCCCCChhH
Q psy3462 292 KNCLLESPTGSGKTL 306 (795)
Q Consensus 292 ~~~l~EaPTGTGKTl 306 (795)
.++++.||+|||||.
T Consensus 39 ~~~ll~G~~G~GKT~ 53 (226)
T 2chg_A 39 PHLLFSGPPGTGKTA 53 (226)
T ss_dssp CCEEEECSTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 469999999999995
No 197
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=80.89 E-value=2.6 Score=48.23 Aligned_cols=58 Identities=10% Similarity=-0.024 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCceeEEeccccccc
Q psy3462 19 FLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELVQQKMFEQRTQDLQKTSFVFCGRSDFFL 98 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~~~~vq~~~~~~~~~~~~~~~~~yc~rth~~l 98 (795)
+...+.|++.+. .+..+..++|.||.|||||.. +-++.... . ..+.+|+.|+.|+...
T Consensus 188 ~~L~~~Q~~Av~----~~~~~~~~~I~G~pGTGKTt~--i~~l~~~l---------------~-~~g~~Vl~~ApT~~Aa 245 (574)
T 3e1s_A 188 KGLSEEQASVLD----QLAGHRLVVLTGGPGTGKSTT--TKAVADLA---------------E-SLGLEVGLCAPTGKAA 245 (574)
T ss_dssp TTCCHHHHHHHH----HHTTCSEEEEECCTTSCHHHH--HHHHHHHH---------------H-HTTCCEEEEESSHHHH
T ss_pred CCCCHHHHHHHH----HHHhCCEEEEEcCCCCCHHHH--HHHHHHHH---------------H-hcCCeEEEecCcHHHH
Confidence 345588855444 344568899999999999932 22222111 0 1346788888777554
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=80.87 E-value=1.1 Score=42.71 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=13.8
Q ss_pred CcEEEeCCCCCChhH
Q psy3462 292 KNCLLESPTGSGKTL 306 (795)
Q Consensus 292 ~~~l~EaPTGTGKTl 306 (795)
..+++.||+|||||.
T Consensus 55 ~~~~l~G~~GtGKT~ 69 (202)
T 2w58_A 55 KGLYLHGSFGVGKTY 69 (202)
T ss_dssp CEEEEECSTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 679999999999996
No 199
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=80.71 E-value=2.2 Score=50.71 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCceeEEecccccccc
Q psy3462 23 SSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELVQQKMFEQRTQDLQKTSFVFCGRSDFFLL 99 (795)
Q Consensus 23 ~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~~~~vq~~~~~~~~~~~~~~~~~yc~rth~~l~ 99 (795)
+.|.+.+..+ ..+...+|.||.|||||... .-++.++... .+.+++.|+-||....
T Consensus 363 ~~Q~~Av~~~----l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~----------------~~~~ILv~a~tn~A~d 418 (802)
T 2xzl_A 363 SSQSNAVSHV----LQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI----------------HKDRILVCAPSNVAVD 418 (802)
T ss_dssp HHHHHHHHHH----TTCSEEEEECSTTSSHHHHH-HHHHHHHHHH----------------HCCCEEEEESSHHHHH
T ss_pred HHHHHHHHHH----hcCCCEEEECCCCCCHHHHH-HHHHHHHHhC----------------CCCeEEEEcCcHHHHH
Confidence 7885544433 23567999999999999542 2222222110 3468888988887753
No 200
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=80.08 E-value=1.7 Score=45.65 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHhcCC--c-EEEECCCCCchH
Q psy3462 21 KYSSCKILHLQVIQGCNKAK--N-CLLESPTGSGKT 53 (795)
Q Consensus 21 p~~~Q~~mm~~i~~al~~~~--~-~llEAPTGTGKT 53 (795)
.||.|.+.++.+.+++.+++ + .++.||.|||||
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt 38 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDD 38 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHH
Confidence 48999999999999998875 3 899999999999
No 201
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=79.95 E-value=1.5 Score=45.93 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHH
Q psy3462 250 AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLAL 308 (795)
Q Consensus 250 ~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlay 308 (795)
.||+|.+.++.+.+++.+++ -....++.||.|||||...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~--------------------~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGR--------------------GHHALLIQALPGMGDDALI 41 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTC--------------------CCSEEEEECCTTSCHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCC--------------------cceeEEEECCCCchHHHHH
Confidence 58999999999999887531 1234899999999998643
No 202
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=79.79 E-value=2 Score=50.53 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHH
Q psy3462 248 VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVL 313 (795)
Q Consensus 248 y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l 313 (795)
.+.||.|.+.+..+...... +..++|-.+||+|||+..+..+.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~-----------------------~~~~ILademGlGKT~~ai~~i~ 277 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSK-----------------------GDNGILADEMGLGKTVQTVAFIS 277 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTT-----------------------TCCEEECCCTTSSTTHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhc-----------------------CCCEEEEeCCCcchHHHHHHHHH
Confidence 46899999999988766643 56799999999999998766543
No 203
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=79.64 E-value=2.3 Score=48.81 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 247 PVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 247 py~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
....||.|.+.+..+.+.+... ....+..+++..+||+|||+..+..+....+
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~------------------~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~ 105 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGR------------------RIENSYGCIMADEMGLGKTLQCITLIWTLLK 105 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTS------------------SSTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcc------------------cccCCCCeEeeeCCCchHHHHHHHHHHHHHH
Confidence 4578999999999988776421 0113466899999999999988777655544
No 204
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=79.62 E-value=1 Score=43.16 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=14.5
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+.++++.||+|||||.
T Consensus 52 ~~~~ll~G~~G~GKT~ 67 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTH 67 (242)
T ss_dssp CSEEEEECSTTSSHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 5789999999999995
No 205
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.58 E-value=0.87 Score=45.68 Aligned_cols=16 Identities=50% Similarity=0.750 Sum_probs=14.1
Q ss_pred cCCcEEEECCCCCchH
Q psy3462 38 KAKNCLLESPTGSGKT 53 (795)
Q Consensus 38 ~~~~~llEAPTGTGKT 53 (795)
....++|.||+|||||
T Consensus 50 ~~~~~ll~G~~GtGKT 65 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKT 65 (285)
T ss_dssp CCSEEEEESSSSSSHH
T ss_pred CCCeEEEECCCCCcHH
Confidence 3467999999999999
No 206
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.78 E-value=0.93 Score=45.85 Aligned_cols=16 Identities=63% Similarity=0.843 Sum_probs=14.1
Q ss_pred CCcEEEECCCCCchHH
Q psy3462 39 AKNCLLESPTGSGKTL 54 (795)
Q Consensus 39 ~~~~llEAPTGTGKTL 54 (795)
...++|.||+|||||.
T Consensus 54 ~~~vll~Gp~GtGKT~ 69 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTL 69 (297)
T ss_dssp CSEEEEESSSSSCHHH
T ss_pred CCeEEEECcCCCCHHH
Confidence 4679999999999993
No 207
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=78.21 E-value=2.7 Score=50.06 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccCCceeEEecccccccc
Q psy3462 22 YSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELVQQKMFEQRTQDLQKTSFVFCGRSDFFLL 99 (795)
Q Consensus 22 ~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~paL~~~~~~~~~vq~~~~~~~~~~~~~~~~~yc~rth~~l~ 99 (795)
-+.|.+.+..+ + .+...+|.||.|||||... ..++.++. ...+.+++.|+-||....
T Consensus 358 n~~Q~~Av~~~---l-~~~~~lI~GppGTGKT~ti-~~~i~~l~----------------~~~~~~ilv~a~tn~A~~ 414 (800)
T 2wjy_A 358 NHSQVYAVKTV---L-QRPLSLIQGPPGTGKTVTS-ATIVYHLA----------------RQGNGPVLVCAPSNIAVD 414 (800)
T ss_dssp CHHHHHHHHHH---H-TSSEEEEECCTTSCHHHHH-HHHHHHHH----------------TTCSSCEEEEESSHHHHH
T ss_pred CHHHHHHHHHh---c-cCCeEEEEcCCCCCHHHHH-HHHHHHHH----------------HcCCCcEEEEcCcHHHHH
Confidence 37785544433 3 3567999999999999532 22222211 114568889998887653
No 208
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=77.92 E-value=0.62 Score=48.15 Aligned_cols=17 Identities=41% Similarity=0.483 Sum_probs=15.0
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.+.++++.||+|||||.
T Consensus 45 ~~~~vll~G~pGtGKT~ 61 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTL 61 (331)
T ss_dssp HTCCEEEESCCCHHHHH
T ss_pred cCCeEEEECCCCCcHHH
Confidence 35789999999999995
No 209
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=77.59 E-value=1.9 Score=43.05 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=14.4
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+.+++|.||+|||||.
T Consensus 29 ~~~vll~G~~GtGKt~ 44 (265)
T 2bjv_A 29 DKPVLIIGERGTGKEL 44 (265)
T ss_dssp CSCEEEECCTTSCHHH
T ss_pred CCCEEEECCCCCcHHH
Confidence 5789999999999995
No 210
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=77.59 E-value=1.5 Score=45.45 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHhcCC--c-EEEECCCCCchH
Q psy3462 21 KYSSCKILHLQVIQGCNKAK--N-CLLESPTGSGKT 53 (795)
Q Consensus 21 p~~~Q~~mm~~i~~al~~~~--~-~llEAPTGTGKT 53 (795)
..-+|.+.++.+..++..+. + ++|.||.|||||
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT 52 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKT 52 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHH
T ss_pred hccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHH
Confidence 34567777788888887765 2 799999999999
No 211
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=76.57 E-value=1.7 Score=44.30 Aligned_cols=14 Identities=50% Similarity=0.712 Sum_probs=13.3
Q ss_pred CcEEEECCCCCchH
Q psy3462 40 KNCLLESPTGSGKT 53 (795)
Q Consensus 40 ~~~llEAPTGTGKT 53 (795)
.+++|.||+|||||
T Consensus 39 ~~vll~G~~GtGKT 52 (324)
T 1hqc_A 39 EHLLLFGPPGLGKT 52 (324)
T ss_dssp CCCEEECCTTCCCH
T ss_pred CcEEEECCCCCCHH
Confidence 67999999999999
No 212
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=76.48 E-value=1.9 Score=44.77 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhcC----CcEEEECCCCCchHH
Q psy3462 23 SSCKILHLQVIQGCNKA----KNCLLESPTGSGKTL 54 (795)
Q Consensus 23 ~~Q~~mm~~i~~al~~~----~~~llEAPTGTGKTL 54 (795)
+.+.+.+..+.+.+..+ ..++|.||+|||||.
T Consensus 50 ~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~ 85 (368)
T 3uk6_A 50 LAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTA 85 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHH
Confidence 34444455566666654 369999999999993
No 213
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=76.07 E-value=1.4 Score=44.53 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=13.3
Q ss_pred CcEEEECCCCCchHH
Q psy3462 40 KNCLLESPTGSGKTL 54 (795)
Q Consensus 40 ~~~llEAPTGTGKTL 54 (795)
.+++|.||+|||||.
T Consensus 68 ~~vll~G~~GtGKT~ 82 (309)
T 3syl_A 68 LHMSFTGNPGTGKTT 82 (309)
T ss_dssp CEEEEEECTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 369999999999993
No 214
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=75.94 E-value=2 Score=44.27 Aligned_cols=31 Identities=29% Similarity=0.264 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHH------hcCCcEEEECCCCCchHH
Q psy3462 24 SCKILHLQVIQGC------NKAKNCLLESPTGSGKTL 54 (795)
Q Consensus 24 ~Q~~mm~~i~~al------~~~~~~llEAPTGTGKTL 54 (795)
++.+-++.+...+ ....+++|.||+|||||.
T Consensus 23 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~ 59 (387)
T 2v1u_A 23 HREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTA 59 (387)
T ss_dssp TCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHH
Confidence 3334444555544 234579999999999993
No 215
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=75.67 E-value=1.1 Score=45.97 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHh--cCCcEEEECCCCCchH
Q psy3462 23 SSCKILHLQVIQGCN--KAKNCLLESPTGSGKT 53 (795)
Q Consensus 23 ~~Q~~mm~~i~~al~--~~~~~llEAPTGTGKT 53 (795)
-+|..++..+..++. ...+++|.||+|||||
T Consensus 27 ~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT 59 (350)
T 1g8p_A 27 VGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKS 59 (350)
T ss_dssp CSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTT
T ss_pred cChHHHHHHHHHHhhCCCCceEEEECCCCccHH
Confidence 345555554444332 3567999999999999
No 216
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=75.59 E-value=1 Score=50.89 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.3
Q ss_pred ccccCcEEEeCCCCCChhH
Q psy3462 288 CNKAKNCLLESPTGSGKTL 306 (795)
Q Consensus 288 l~~~~~~l~EaPTGTGKTl 306 (795)
+..+.+++++||+|||||.
T Consensus 38 l~~~~~VLL~GpPGtGKT~ 56 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSL 56 (500)
T ss_dssp HHHTCEEEEECCSSSSHHH
T ss_pred HhcCCeeEeecCchHHHHH
Confidence 4457899999999999995
No 217
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=75.41 E-value=1 Score=45.24 Aligned_cols=18 Identities=50% Similarity=0.757 Sum_probs=15.2
Q ss_pred cccCcEEEeCCCCCChhH
Q psy3462 289 NKAKNCLLESPTGSGKTL 306 (795)
Q Consensus 289 ~~~~~~l~EaPTGTGKTl 306 (795)
.....++|.||+|||||.
T Consensus 49 ~~~~~~ll~G~~GtGKT~ 66 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTL 66 (285)
T ss_dssp CCCSEEEEESSSSSSHHH
T ss_pred CCCCeEEEECCCCCcHHH
Confidence 345679999999999995
No 218
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=75.25 E-value=2.7 Score=41.25 Aligned_cols=17 Identities=53% Similarity=0.765 Sum_probs=14.5
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
....++|.||+|||||.
T Consensus 38 ~~~~vll~G~~GtGKT~ 54 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTL 54 (262)
T ss_dssp CCCEEEEESCTTSSHHH
T ss_pred CCceEEEECCCCCCHHH
Confidence 34678999999999995
No 219
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=75.12 E-value=2.8 Score=41.17 Aligned_cols=15 Identities=60% Similarity=0.897 Sum_probs=13.1
Q ss_pred CcEEEECCCCCchHH
Q psy3462 40 KNCLLESPTGSGKTL 54 (795)
Q Consensus 40 ~~~llEAPTGTGKTL 54 (795)
..++|.+|+|||||.
T Consensus 40 ~~vll~G~~GtGKT~ 54 (262)
T 2qz4_A 40 KGALLLGPPGCGKTL 54 (262)
T ss_dssp CEEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 458999999999993
No 220
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=75.02 E-value=1.2 Score=44.94 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhcCC--cEEEECCCCCchHH
Q psy3462 23 SSCKILHLQVIQGCNKAK--NCLLESPTGSGKTL 54 (795)
Q Consensus 23 ~~Q~~mm~~i~~al~~~~--~~llEAPTGTGKTL 54 (795)
-+|.+.++.+.+.+..+. +++|.||+|||||.
T Consensus 20 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~ 53 (319)
T 2chq_A 20 VGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTA 53 (319)
T ss_dssp CSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHH
T ss_pred hCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHH
Confidence 356677778888777664 69999999999993
No 221
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=74.86 E-value=1.7 Score=48.03 Aligned_cols=35 Identities=23% Similarity=0.151 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHHHHhc--CCcEEEECCCCCchH
Q psy3462 19 FLKYSSCKILHLQVIQGCNK--AKNCLLESPTGSGKT 53 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~--~~~~llEAPTGTGKT 53 (795)
+-|--+|...|+.+.+.+.. ..+++|.||+|||||
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT 215 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKT 215 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHH
Confidence 34455677778888888854 467999999999999
No 222
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=74.61 E-value=1.7 Score=46.46 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=15.7
Q ss_pred ccCcEEEeCCCCCChhHHH
Q psy3462 290 KAKNCLLESPTGSGKTLAL 308 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTlay 308 (795)
.+.+++|-||+|||||...
T Consensus 44 ~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3568999999999999643
No 223
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=74.53 E-value=2.4 Score=42.04 Aligned_cols=15 Identities=47% Similarity=0.829 Sum_probs=13.3
Q ss_pred CCcEEEECCCCCchH
Q psy3462 39 AKNCLLESPTGSGKT 53 (795)
Q Consensus 39 ~~~~llEAPTGTGKT 53 (795)
...++|.+|+|||||
T Consensus 45 ~~~vll~G~~GtGKT 59 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKT 59 (257)
T ss_dssp CCEEEEECCTTSCHH
T ss_pred CCeEEEECcCCCCHH
Confidence 346999999999999
No 224
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=74.41 E-value=1.4 Score=46.36 Aligned_cols=16 Identities=69% Similarity=0.902 Sum_probs=14.4
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
..+++|.||+|||||.
T Consensus 51 ~~~vll~GppGtGKT~ 66 (363)
T 3hws_A 51 KSNILLIGPTGSGKTL 66 (363)
T ss_dssp CCCEEEECCTTSSHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 4689999999999996
No 225
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=73.93 E-value=1.9 Score=45.62 Aligned_cols=15 Identities=67% Similarity=0.873 Sum_probs=13.6
Q ss_pred CCcEEEECCCCCchH
Q psy3462 39 AKNCLLESPTGSGKT 53 (795)
Q Consensus 39 ~~~~llEAPTGTGKT 53 (795)
..+++|.+|+|||||
T Consensus 72 ~~~ill~Gp~GtGKT 86 (376)
T 1um8_A 72 KSNILLIGPTGSGKT 86 (376)
T ss_dssp CCCEEEECCTTSSHH
T ss_pred CCCEEEECCCCCCHH
Confidence 457999999999999
No 226
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=73.92 E-value=2.1 Score=49.13 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=16.7
Q ss_pred cCcEEEeCCCCCChhHHHHHH
Q psy3462 291 AKNCLLESPTGSGKTLALLCS 311 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTlayL~~ 311 (795)
....||.||.|||||....--
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~ 225 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEI 225 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 357999999999999765433
No 227
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=73.91 E-value=2 Score=40.36 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=13.4
Q ss_pred CcEEEeCCCCCChhH
Q psy3462 292 KNCLLESPTGSGKTL 306 (795)
Q Consensus 292 ~~~l~EaPTGTGKTl 306 (795)
..+++.||+|||||.
T Consensus 46 ~~~ll~G~~G~GKT~ 60 (250)
T 1njg_A 46 HAYLFSGTRGVGKTS 60 (250)
T ss_dssp SEEEEECSTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 468999999999995
No 228
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=73.90 E-value=1.7 Score=44.85 Aligned_cols=16 Identities=50% Similarity=0.814 Sum_probs=14.0
Q ss_pred CCcEEEECCCCCchHH
Q psy3462 39 AKNCLLESPTGSGKTL 54 (795)
Q Consensus 39 ~~~~llEAPTGTGKTL 54 (795)
+..++|.||+|||||+
T Consensus 49 ~~~vLL~Gp~GtGKT~ 64 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTL 64 (301)
T ss_dssp CSEEEEECSSSSSHHH
T ss_pred CceEEEECCCCcCHHH
Confidence 4679999999999993
No 229
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.67 E-value=2.3 Score=44.28 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhcCCc--EEEECCCCCchH
Q psy3462 23 SSCKILHLQVIQGCNKAKN--CLLESPTGSGKT 53 (795)
Q Consensus 23 ~~Q~~mm~~i~~al~~~~~--~llEAPTGTGKT 53 (795)
-+|.+.++.+...+.+++. ++|.||.|||||
T Consensus 28 ~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKT 60 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60 (340)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHH
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHH
Confidence 4577888888888888765 999999999999
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=73.40 E-value=1.4 Score=51.43 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhcCC-----------cEEEECCCCCchH
Q psy3462 24 SCKILHLQVIQGCNKAK-----------NCLLESPTGSGKT 53 (795)
Q Consensus 24 ~Q~~mm~~i~~al~~~~-----------~~llEAPTGTGKT 53 (795)
+|.+.|+.+.+++.... +++|.||||||||
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT 535 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 535 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHH
Confidence 46667777777775422 5999999999999
No 231
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=73.37 E-value=2.6 Score=43.33 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhcC----CcEEEECCCCCchH
Q psy3462 24 SCKILHLQVIQGCNKA----KNCLLESPTGSGKT 53 (795)
Q Consensus 24 ~Q~~mm~~i~~al~~~----~~~llEAPTGTGKT 53 (795)
.+......+...+... ..++|.||+|||||
T Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT 51 (324)
T 1l8q_A 18 GNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKT 51 (324)
T ss_dssp TTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHH
T ss_pred cHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHH
Confidence 3333334444444432 47999999999999
No 232
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=73.09 E-value=1.7 Score=46.36 Aligned_cols=16 Identities=50% Similarity=0.808 Sum_probs=14.1
Q ss_pred CCcEEEECCCCCchHH
Q psy3462 39 AKNCLLESPTGSGKTL 54 (795)
Q Consensus 39 ~~~~llEAPTGTGKTL 54 (795)
..+++|.+|+|||||.
T Consensus 148 ~~~vLL~GppGtGKT~ 163 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTM 163 (389)
T ss_dssp CSEEEEESSTTSCHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 3679999999999993
No 233
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=73.09 E-value=0.92 Score=46.63 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=14.2
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
..+++|.||+|||||.
T Consensus 45 ~~~vLl~G~~GtGKT~ 60 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKST 60 (350)
T ss_dssp GCCEEEECCGGGCTTH
T ss_pred CceEEEECCCCccHHH
Confidence 4579999999999996
No 234
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=73.01 E-value=1.4 Score=44.21 Aligned_cols=16 Identities=56% Similarity=0.748 Sum_probs=14.2
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
..++++.||+|||||.
T Consensus 50 ~~~vll~G~~GtGKT~ 65 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTE 65 (310)
T ss_dssp CCCEEEECCTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4679999999999995
No 235
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=72.48 E-value=4.5 Score=41.82 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=12.5
Q ss_pred cEEEECCCCCchH
Q psy3462 41 NCLLESPTGSGKT 53 (795)
Q Consensus 41 ~~llEAPTGTGKT 53 (795)
.++|.||+|||||
T Consensus 46 ~~li~G~~G~GKT 58 (389)
T 1fnn_A 46 RATLLGRPGTGKT 58 (389)
T ss_dssp EEEEECCTTSSHH
T ss_pred eEEEECCCCCCHH
Confidence 7999999999999
No 236
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=71.65 E-value=2.1 Score=47.43 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=26.9
Q ss_pred CCHHHHHHH---HHHHHHHhcCC--cEEEECCCCCchH
Q psy3462 21 KYSSCKILH---LQVIQGCNKAK--NCLLESPTGSGKT 53 (795)
Q Consensus 21 p~~~Q~~mm---~~i~~al~~~~--~~llEAPTGTGKT 53 (795)
..-+|...+ ..+...+..+. .++|.+|+|||||
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKT 64 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKT 64 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHH
T ss_pred HhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHH
Confidence 346777777 67888888776 4999999999999
No 237
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=71.61 E-value=1.9 Score=45.76 Aligned_cols=16 Identities=56% Similarity=0.821 Sum_probs=13.9
Q ss_pred CCcEEEECCCCCchHH
Q psy3462 39 AKNCLLESPTGSGKTL 54 (795)
Q Consensus 39 ~~~~llEAPTGTGKTL 54 (795)
...++|.+|+|||||.
T Consensus 117 ~~~vLl~GppGtGKT~ 132 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTL 132 (357)
T ss_dssp CSEEEEESSTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4569999999999993
No 238
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=71.58 E-value=3 Score=43.24 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=14.6
Q ss_pred cCcEEEeCCCCCChhHH
Q psy3462 291 AKNCLLESPTGSGKTLA 307 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTla 307 (795)
+..++|.||+|||||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45799999999999963
No 239
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=71.47 E-value=2.4 Score=47.95 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCcEEEECCCCCchH
Q psy3462 27 ILHLQVIQGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 27 ~mm~~i~~al~~~~~~llEAPTGTGKT 53 (795)
++++.+.-++..+.+++|.+|||+|||
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKT 274 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKT 274 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHH
Confidence 345667777888999999999999999
No 240
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=71.20 E-value=2.1 Score=44.49 Aligned_cols=36 Identities=17% Similarity=-0.002 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHH-HHHHHHhc--CCcEEEECCCCCchHH
Q psy3462 19 FLKYSSCKILHL-QVIQGCNK--AKNCLLESPTGSGKTL 54 (795)
Q Consensus 19 ~~p~~~Q~~mm~-~i~~al~~--~~~~llEAPTGTGKTL 54 (795)
+.-+..+.+-+. .+...+.. ...++|.||+|||||.
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~ 60 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTF 60 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHH
Confidence 334455543333 33333333 3469999999999993
No 241
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=70.95 E-value=2.5 Score=48.23 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEECCCCCchH
Q psy3462 23 SSCKILHLQVIQGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 23 ~~Q~~mm~~i~~al~~~~~~llEAPTGTGKT 53 (795)
-+|...++.+..++..+.+++|.+|+|||||
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKT 74 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKS 74 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHH
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHH
Confidence 4577888999999999999999999999999
No 242
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=70.82 E-value=2 Score=44.64 Aligned_cols=15 Identities=40% Similarity=0.716 Sum_probs=13.3
Q ss_pred CcEEEECCCCCchHH
Q psy3462 40 KNCLLESPTGSGKTL 54 (795)
Q Consensus 40 ~~~llEAPTGTGKTL 54 (795)
.+++|.+|+|||||+
T Consensus 52 ~~vLl~GppGtGKT~ 66 (322)
T 3eie_A 52 SGILLYGPPGTGKSY 66 (322)
T ss_dssp CEEEEECSSSSCHHH
T ss_pred CeEEEECCCCCcHHH
Confidence 469999999999994
No 243
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=70.63 E-value=3.2 Score=43.12 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=14.5
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
..+++|.||||||||+
T Consensus 25 ~~~vLi~Ge~GtGKt~ 40 (304)
T 1ojl_A 25 DATVLIHGDSGTGKEL 40 (304)
T ss_dssp TSCEEEESCTTSCHHH
T ss_pred CCcEEEECCCCchHHH
Confidence 5689999999999996
No 244
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.51 E-value=2.1 Score=43.17 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhcCC--cEEEECCCCCchH
Q psy3462 23 SSCKILHLQVIQGCNKAK--NCLLESPTGSGKT 53 (795)
Q Consensus 23 ~~Q~~mm~~i~~al~~~~--~~llEAPTGTGKT 53 (795)
-+|.+.++.+.+.+.++. +++|.||+|||||
T Consensus 24 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt 56 (323)
T 1sxj_B 24 VGNKETIDRLQQIAKDGNMPHMIISGMPGIGKT 56 (323)
T ss_dssp CSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHH
T ss_pred HCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHH
Confidence 356666777778887653 5999999999999
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=69.88 E-value=2.7 Score=44.00 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=14.2
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+.+++|-||||||||.
T Consensus 152 ~~~lll~G~~GtGKT~ 167 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSY 167 (308)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4689999999999995
No 246
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=69.87 E-value=3.6 Score=45.13 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcC----CcEEEECCCCCchHH
Q psy3462 27 ILHLQVIQGCNKA----KNCLLESPTGSGKTL 54 (795)
Q Consensus 27 ~mm~~i~~al~~~----~~~llEAPTGTGKTL 54 (795)
+.+..+.+.+..+ .++++.+|+|||||.
T Consensus 47 ~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~ 78 (456)
T 2c9o_A 47 EACGVIVELIKSKKMAGRAVLLAGPPGTGKTA 78 (456)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCTTSSHHH
T ss_pred HHHHHHHHHHHhCCCCCCeEEEECCCcCCHHH
Confidence 3333445555443 479999999999993
No 247
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=69.78 E-value=4.3 Score=48.57 Aligned_cols=52 Identities=19% Similarity=0.104 Sum_probs=32.4
Q ss_pred EEeCCCCCChhHHHHHHHHHHHHHhhH----HHHHHHHhhhhhhhh---hcCCCCceEE
Q psy3462 295 LLESPTGSGKTLALLCSVLAWQRKEKE----LVQQKMFEQRTQDLQ---KIPFRKLKIS 346 (795)
Q Consensus 295 l~EaPTGTGKTlayL~~~l~~~~~~~k----~LQ~Ql~~kdip~l~---~i~~~~l~~~ 346 (795)
+.|+.||+||||++.+|++..+...+. ..-+.|..+|...+. +.+|..+-..
T Consensus 92 iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i 150 (822)
T 3jux_A 92 VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVI 150 (822)
T ss_dssp EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEE
Confidence 889999999999999998755544322 222334444444433 3566555433
No 248
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=69.71 E-value=2.2 Score=43.08 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHH
Q psy3462 253 SQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLA 307 (795)
Q Consensus 253 ~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTla 307 (795)
+|...+..+.+.+..+ ...++++.||+|||||..
T Consensus 29 g~~~~~~~l~~~l~~~---------------------~~~~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 29 GQEHIVKRLKHYVKTG---------------------SMPHLLFAGPPGVGKTTA 62 (327)
T ss_dssp SCHHHHHHHHHHHHHT---------------------CCCEEEEESCTTSSHHHH
T ss_pred CCHHHHHHHHHHHHcC---------------------CCCeEEEECcCCCCHHHH
Confidence 4666777777766532 124699999999999964
No 249
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=69.64 E-value=1.5 Score=44.42 Aligned_cols=16 Identities=44% Similarity=0.555 Sum_probs=13.9
Q ss_pred CcEEEeCCCCCChhHH
Q psy3462 292 KNCLLESPTGSGKTLA 307 (795)
Q Consensus 292 ~~~l~EaPTGTGKTla 307 (795)
.++++.||+|||||..
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 4789999999999953
No 250
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=69.15 E-value=2.1 Score=47.02 Aligned_cols=16 Identities=44% Similarity=0.796 Sum_probs=14.2
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
++++++.||+|||||.
T Consensus 63 ~~~iLl~GppGtGKT~ 78 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTA 78 (456)
T ss_dssp TCEEEEECCTTSSHHH
T ss_pred CCeEEEECCCcCCHHH
Confidence 4679999999999995
No 251
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=69.14 E-value=2.3 Score=47.00 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhH
Q psy3462 250 AYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTL 306 (795)
Q Consensus 250 ~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTl 306 (795)
+--+|...|..+...+.+. ...+++|.||+|||||.
T Consensus 181 ~iiGr~~~i~~l~~~l~r~---------------------~~~~~LL~G~pG~GKT~ 216 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRR---------------------TKNNPVLIGEPGVGKTA 216 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCS---------------------SSCEEEEESCTTTTTHH
T ss_pred CccCcHHHHHHHHHHHhcc---------------------CCCCeEEECCCCCCHHH
Confidence 3335566666777766542 24688999999999996
No 252
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=68.93 E-value=2.2 Score=44.66 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcC-------CcEEEECCCCCchH
Q psy3462 24 SCKILHLQVIQGCNKA-------KNCLLESPTGSGKT 53 (795)
Q Consensus 24 ~Q~~mm~~i~~al~~~-------~~~llEAPTGTGKT 53 (795)
+|....+.+..++..+ .+++|.+|+|+|||
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKT 65 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKT 65 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHH
Confidence 4555555555555543 68999999999999
No 253
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=68.89 E-value=1.7 Score=50.40 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcC-----------CcEEEECCCCCchHH
Q psy3462 24 SCKILHLQVIQGCNKA-----------KNCLLESPTGSGKTL 54 (795)
Q Consensus 24 ~Q~~mm~~i~~al~~~-----------~~~llEAPTGTGKTL 54 (795)
+|.+.++.+..++... .+++|.+|||||||.
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~ 503 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTE 503 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHH
Confidence 4555666666665431 159999999999993
No 254
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=68.76 E-value=2.4 Score=43.67 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=14.1
Q ss_pred CcEEEeCCCCCChhHH
Q psy3462 292 KNCLLESPTGSGKTLA 307 (795)
Q Consensus 292 ~~~l~EaPTGTGKTla 307 (795)
.+++|.||+|||||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5799999999999963
No 255
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=68.72 E-value=2.7 Score=48.97 Aligned_cols=36 Identities=22% Similarity=0.135 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHHhc--CCcEEEECCCCCchHH
Q psy3462 19 FLKYSSCKILHLQVIQGCNK--AKNCLLESPTGSGKTL 54 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~--~~~~llEAPTGTGKTL 54 (795)
+.|--+|...|+.+.+.+.. ..+++|.+|+|||||.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~ 216 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTA 216 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHH
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHH
Confidence 34555677788888888855 4589999999999994
No 256
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=67.99 E-value=2.6 Score=41.90 Aligned_cols=16 Identities=56% Similarity=0.885 Sum_probs=13.5
Q ss_pred CCcEEEECCCCCchHH
Q psy3462 39 AKNCLLESPTGSGKTL 54 (795)
Q Consensus 39 ~~~~llEAPTGTGKTL 54 (795)
...++|.||+|||||.
T Consensus 44 ~~~vll~G~~GtGKT~ 59 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTL 59 (268)
T ss_dssp CSCCCCBCSSCSSHHH
T ss_pred CceEEEECCCCCcHHH
Confidence 3458999999999993
No 257
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=67.43 E-value=2.6 Score=42.40 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHH
Q psy3462 253 SQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLA 307 (795)
Q Consensus 253 ~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTla 307 (795)
+|...+..+.+.+..+ ...++++.||+|||||..
T Consensus 21 g~~~~~~~l~~~l~~~---------------------~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 21 GQDEVIQRLKGYVERK---------------------NIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp SCHHHHHHHHTTTTTT---------------------CCCCEEEESSSSSSHHHH
T ss_pred CCHHHHHHHHHHHhCC---------------------CCCeEEEECcCCcCHHHH
Confidence 4566777777776542 124699999999999953
No 258
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=67.30 E-value=1.9 Score=43.57 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.4
Q ss_pred cCcEEEeCCCCCChhHH
Q psy3462 291 AKNCLLESPTGSGKTLA 307 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTla 307 (795)
..+++|.||+|||||..
T Consensus 67 ~~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 45799999999999963
No 259
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=67.23 E-value=2.4 Score=45.06 Aligned_cols=15 Identities=40% Similarity=0.716 Sum_probs=13.3
Q ss_pred CcEEEECCCCCchHH
Q psy3462 40 KNCLLESPTGSGKTL 54 (795)
Q Consensus 40 ~~~llEAPTGTGKTL 54 (795)
..++|.+|+|||||+
T Consensus 85 ~~iLL~GppGtGKT~ 99 (355)
T 2qp9_X 85 SGILLYGPPGTGKSY 99 (355)
T ss_dssp CCEEEECSTTSCHHH
T ss_pred ceEEEECCCCCcHHH
Confidence 469999999999993
No 260
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=67.09 E-value=3.4 Score=42.63 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=11.8
Q ss_pred cEEEECCCCCchH
Q psy3462 41 NCLLESPTGSGKT 53 (795)
Q Consensus 41 ~~llEAPTGTGKT 53 (795)
.+++.+|+|||||
T Consensus 38 ~lLl~GppGtGKT 50 (293)
T 3t15_A 38 ILGIWGGKGQGKS 50 (293)
T ss_dssp EEEEEECTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 4788899999999
No 261
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=66.46 E-value=2.5 Score=42.93 Aligned_cols=16 Identities=44% Similarity=0.571 Sum_probs=14.1
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
..+++|.||+|||||.
T Consensus 38 ~~~vll~G~~GtGKT~ 53 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTT 53 (324)
T ss_dssp CCCCEEECCTTCCCHH
T ss_pred CCcEEEECCCCCCHHH
Confidence 3679999999999995
No 262
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=65.91 E-value=2.4 Score=43.62 Aligned_cols=18 Identities=44% Similarity=0.722 Sum_probs=15.2
Q ss_pred cccCcEEEeCCCCCChhH
Q psy3462 289 NKAKNCLLESPTGSGKTL 306 (795)
Q Consensus 289 ~~~~~~l~EaPTGTGKTl 306 (795)
..+..++|.||+|||||+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~ 64 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTL 64 (301)
T ss_dssp CCCSEEEEECSSSSSHHH
T ss_pred CCCceEEEECCCCcCHHH
Confidence 345679999999999995
No 263
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=65.87 E-value=4.1 Score=46.71 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=15.3
Q ss_pred CcEEEeCCCCCChhHHHH
Q psy3462 292 KNCLLESPTGSGKTLALL 309 (795)
Q Consensus 292 ~~~l~EaPTGTGKTlayL 309 (795)
...++.||+|||||....
T Consensus 196 ~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 578999999999997643
No 264
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.82 E-value=4.2 Score=41.66 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHH
Q psy3462 253 SQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLA 307 (795)
Q Consensus 253 ~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTla 307 (795)
+|...++.+..++..+ ...++++.||+|||||..
T Consensus 41 g~~~~~~~l~~~l~~~---------------------~~~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 41 AQDHAVTVLKKTLKSA---------------------NLPHMLFYGPPGTGKTST 74 (353)
T ss_dssp SCCTTHHHHHHHTTCT---------------------TCCCEEEECSTTSSHHHH
T ss_pred CCHHHHHHHHHHHhcC---------------------CCCEEEEECCCCCCHHHH
Confidence 4555667777777542 124699999999999964
No 265
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=65.65 E-value=3.6 Score=44.00 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCcEEEECCCCCchH
Q psy3462 29 HLQVIQGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 29 m~~i~~al~~~~~~llEAPTGTGKT 53 (795)
.+.+.-++..++.++|-+|||+|||
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKS 189 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKT 189 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHH
Confidence 3777778889999999999999999
No 266
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=65.64 E-value=3.2 Score=43.44 Aligned_cols=14 Identities=43% Similarity=0.800 Sum_probs=12.9
Q ss_pred CcEEEECCCCCchH
Q psy3462 40 KNCLLESPTGSGKT 53 (795)
Q Consensus 40 ~~~llEAPTGTGKT 53 (795)
..++|.||+|||||
T Consensus 46 ~~iLL~GppGtGKT 59 (322)
T 1xwi_A 46 RGILLFGPPGTGKS 59 (322)
T ss_dssp SEEEEESSSSSCHH
T ss_pred ceEEEECCCCccHH
Confidence 46999999999999
No 267
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=64.96 E-value=2.2 Score=42.74 Aligned_cols=17 Identities=47% Similarity=0.557 Sum_probs=14.5
Q ss_pred cCcEEEeCCCCCChhHH
Q psy3462 291 AKNCLLESPTGSGKTLA 307 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTla 307 (795)
...++|.||+|||||..
T Consensus 64 ~~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 46799999999999963
No 268
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=64.76 E-value=2.7 Score=42.49 Aligned_cols=17 Identities=59% Similarity=0.770 Sum_probs=14.6
Q ss_pred cCcEEEeCCCCCChhHH
Q psy3462 291 AKNCLLESPTGSGKTLA 307 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTla 307 (795)
...++|.||+|||||..
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 46799999999999963
No 269
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=64.72 E-value=3.3 Score=42.48 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=13.6
Q ss_pred CCcEEEECCCCCchH
Q psy3462 39 AKNCLLESPTGSGKT 53 (795)
Q Consensus 39 ~~~~llEAPTGTGKT 53 (795)
+..++|.||+|||||
T Consensus 45 ~~~vli~G~~G~GKT 59 (386)
T 2qby_A 45 PNNIFIYGLTGTGKT 59 (386)
T ss_dssp CCCEEEEECTTSSHH
T ss_pred CCeEEEECCCCCCHH
Confidence 457999999999999
No 270
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=64.23 E-value=2.3 Score=43.82 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=13.6
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
...+++.||+|||||.
T Consensus 36 p~~lLl~GppGtGKT~ 51 (293)
T 3t15_A 36 PLILGIWGGKGQGKSF 51 (293)
T ss_dssp CSEEEEEECTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4568889999999995
No 271
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=64.16 E-value=4.5 Score=41.57 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=14.1
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
...++|-||+|||||.
T Consensus 37 ~~~lll~G~~GtGKT~ 52 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTH 52 (324)
T ss_dssp CSSEEEECSSSSSHHH
T ss_pred CCeEEEECCCCCcHHH
Confidence 4679999999999995
No 272
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=64.14 E-value=6.1 Score=39.96 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=14.3
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
++++++.||.|+|||-
T Consensus 31 ~~~v~i~G~~G~GKT~ 46 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSS 46 (350)
T ss_dssp CSEEEEECCTTSSHHH
T ss_pred CCeEEEECCCcCCHHH
Confidence 3689999999999995
No 273
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=63.21 E-value=2.1 Score=49.09 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhcCC-------------cEEEECCCCCchH
Q psy3462 24 SCKILHLQVIQGCNKAK-------------NCLLESPTGSGKT 53 (795)
Q Consensus 24 ~Q~~mm~~i~~al~~~~-------------~~llEAPTGTGKT 53 (795)
+|.+...++.-++..+. +++|.||+|||||
T Consensus 299 G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT 341 (595)
T 3f9v_A 299 GHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKS 341 (595)
T ss_dssp CCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHH
T ss_pred ChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHH
Confidence 45555555655666554 8999999999999
No 274
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=63.10 E-value=3 Score=41.86 Aligned_cols=15 Identities=53% Similarity=0.685 Sum_probs=13.2
Q ss_pred CcEEEECCCCCchHH
Q psy3462 40 KNCLLESPTGSGKTL 54 (795)
Q Consensus 40 ~~~llEAPTGTGKTL 54 (795)
..++|.+|+|||||.
T Consensus 65 ~~vLl~G~~GtGKT~ 79 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTA 79 (272)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECCCCCcHHH
Confidence 359999999999994
No 275
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=62.69 E-value=5.1 Score=40.57 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchH
Q psy3462 19 FLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKT 53 (795)
|..|+.+. +.+.+.+..+..++|.||.|+|||
T Consensus 14 ~~gR~~el---~~L~~~l~~~~~v~i~G~~G~GKT 45 (350)
T 2qen_A 14 IFDREEES---RKLEESLENYPLTLLLGIRRVGKS 45 (350)
T ss_dssp SCSCHHHH---HHHHHHHHHCSEEEEECCTTSSHH
T ss_pred cCChHHHH---HHHHHHHhcCCeEEEECCCcCCHH
Confidence 44455554 444445555688999999999999
No 276
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=62.60 E-value=6 Score=44.54 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHH
Q psy3462 21 KYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALL 57 (795)
Q Consensus 21 p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL 57 (795)
.-+.|++.+. ..+..++|.||.|||||-..+
T Consensus 10 Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 10 LNDKQREAVA------APRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CCHHHHHHHT------CCSSCEEEEECTTSCHHHHHH
T ss_pred CCHHHHHHHh------CCCCCEEEEECCCCCHHHHHH
Confidence 4578854443 346789999999999995543
No 277
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=62.52 E-value=2.7 Score=49.94 Aligned_cols=31 Identities=29% Similarity=0.282 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhcC-----------CcEEEECCCCCchHH
Q psy3462 24 SCKILHLQVIQGCNKA-----------KNCLLESPTGSGKTL 54 (795)
Q Consensus 24 ~Q~~mm~~i~~al~~~-----------~~~llEAPTGTGKTL 54 (795)
+|...|..+..++... ..++|.||||||||.
T Consensus 562 G~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~ 603 (854)
T 1qvr_A 562 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTE 603 (854)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHH
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHH
Confidence 3555666666666432 368999999999993
No 278
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=62.31 E-value=5 Score=41.27 Aligned_cols=17 Identities=47% Similarity=0.587 Sum_probs=14.8
Q ss_pred cCcEEEeCCCCCChhHH
Q psy3462 291 AKNCLLESPTGSGKTLA 307 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTla 307 (795)
..+++|-||+|||||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 56899999999999963
No 279
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=61.91 E-value=4.8 Score=42.61 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCcEEEECCCCCchH
Q psy3462 27 ILHLQVIQGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 27 ~mm~~i~~al~~~~~~llEAPTGTGKT 53 (795)
.+.+.+.-.+..++.+++.+|||+|||
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKT 185 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKT 185 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHH
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHH
Confidence 356677778888999999999999999
No 280
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=61.90 E-value=4 Score=44.75 Aligned_cols=14 Identities=43% Similarity=0.800 Sum_probs=13.0
Q ss_pred CcEEEECCCCCchH
Q psy3462 40 KNCLLESPTGSGKT 53 (795)
Q Consensus 40 ~~~llEAPTGTGKT 53 (795)
..++|.||+|||||
T Consensus 168 ~~vLL~GppGtGKT 181 (444)
T 2zan_A 168 RGILLFGPPGTGKS 181 (444)
T ss_dssp SEEEEECSTTSSHH
T ss_pred ceEEEECCCCCCHH
Confidence 56999999999999
No 281
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=61.86 E-value=4 Score=43.98 Aligned_cols=29 Identities=14% Similarity=0.019 Sum_probs=22.7
Q ss_pred CChhHHHHHhhhCCccccchhhhhhHHHH
Q psy3462 505 PCIEDLEQFSTRALVSPCFQLIQLDLMLD 533 (795)
Q Consensus 505 ~~~~dL~~~~~~~~~cpyf~~~q~~~~~~ 533 (795)
+.++++...+++.++|-++..-.++-+.+
T Consensus 295 ~~l~~~~~~~R~~g~~~~~~~Qs~~ql~~ 323 (437)
T 1e9r_A 295 ASLADALTKGRKAGLRVVAGLQSTSQLDD 323 (437)
T ss_dssp SSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred hhHHHHHHHHhccCCEEEEEecCHHHHHH
Confidence 57899999999999999887755554443
No 282
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=61.47 E-value=4 Score=41.38 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.0
Q ss_pred cCcEEEeCCCCCChh-HH
Q psy3462 291 AKNCLLESPTGSGKT-LA 307 (795)
Q Consensus 291 ~~~~l~EaPTGTGKT-la 307 (795)
+..++|-||||+||| +|
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 556899999999997 44
No 283
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=61.29 E-value=6.5 Score=45.59 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCC-cEEEECCCCCchHHHH
Q psy3462 18 YFLKYSSCKILHLQVIQGCNKAK-NCLLESPTGSGKTLAL 56 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~al~~~~-~~llEAPTGTGKTLAy 56 (795)
.|.|.+.|.+-++++.+.+..+. ..++.+.||+|||+.+
T Consensus 6 ~~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~ 45 (664)
T 1c4o_A 6 GPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTM 45 (664)
T ss_dssp SCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH
T ss_pred CCCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHH
Confidence 46899999988999999998775 5778899999999654
No 284
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=61.22 E-value=3.1 Score=43.16 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=14.4
Q ss_pred cCcEEEeCCCCCChhHH
Q psy3462 291 AKNCLLESPTGSGKTLA 307 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTla 307 (795)
...++|.||+|||||+.
T Consensus 51 ~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCEEEEECSSSSCHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 35699999999999963
No 285
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=61.17 E-value=3.4 Score=39.03 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=14.8
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.+.++++.||+|+|||-
T Consensus 5 ~g~~i~l~G~~GsGKST 21 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGT 21 (207)
T ss_dssp CCCEEEEECSTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46789999999999984
No 286
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=61.16 E-value=3.3 Score=38.70 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=14.8
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.+..+++-||+|+|||.
T Consensus 35 ~g~~~~l~G~~G~GKTt 51 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSH 51 (149)
T ss_dssp CCSEEEEESSSTTTTCH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46789999999999985
No 287
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=61.10 E-value=3.4 Score=40.94 Aligned_cols=16 Identities=50% Similarity=0.860 Sum_probs=13.7
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
...+++.||+|||||.
T Consensus 45 ~~~vll~G~~GtGKT~ 60 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTL 60 (257)
T ss_dssp CCEEEEECCTTSCHHH
T ss_pred CCeEEEECcCCCCHHH
Confidence 3568999999999995
No 288
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=61.04 E-value=2.4 Score=42.19 Aligned_cols=16 Identities=56% Similarity=0.885 Sum_probs=13.6
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
...++|.||+|||||.
T Consensus 44 ~~~vll~G~~GtGKT~ 59 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTL 59 (268)
T ss_dssp CSCCCCBCSSCSSHHH
T ss_pred CceEEEECCCCCcHHH
Confidence 3458999999999995
No 289
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.76 E-value=6.1 Score=41.04 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHHH
Q psy3462 253 SQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALL 309 (795)
Q Consensus 253 ~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlayL 309 (795)
+|...++.+...+..+ .-.+.++.||.|||||....
T Consensus 29 g~~~~~~~L~~~i~~g---------------------~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEG---------------------KLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SCHHHHHHHHHHHHTT---------------------CCCCEEEECSSSSSHHHHHH
T ss_pred CcHHHHHHHHHHHhcC---------------------CCceEEEECCCCCCHHHHHH
Confidence 3666777777766542 11348999999999995443
No 290
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=60.74 E-value=8 Score=38.19 Aligned_cols=13 Identities=54% Similarity=0.833 Sum_probs=12.2
Q ss_pred cEEEECCCCCchH
Q psy3462 41 NCLLESPTGSGKT 53 (795)
Q Consensus 41 ~~llEAPTGTGKT 53 (795)
.++|.+|+|||||
T Consensus 51 g~ll~G~~G~GKT 63 (254)
T 1ixz_A 51 GVLLVGPPGVGKT 63 (254)
T ss_dssp EEEEECCTTSSHH
T ss_pred eEEEECCCCCCHH
Confidence 4899999999999
No 291
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=60.62 E-value=3.5 Score=43.56 Aligned_cols=16 Identities=69% Similarity=0.902 Sum_probs=14.2
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
..+++|.||+|||||.
T Consensus 72 ~~~ill~Gp~GtGKT~ 87 (376)
T 1um8_A 72 KSNILLIGPTGSGKTL 87 (376)
T ss_dssp CCCEEEECCTTSSHHH
T ss_pred CCCEEEECCCCCCHHH
Confidence 4679999999999995
No 292
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=60.54 E-value=3.5 Score=39.08 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.8
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.++.+++-||+|+|||-
T Consensus 4 ~g~~i~i~GpsGsGKST 20 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRH 20 (180)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46789999999999995
No 293
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.54 E-value=3.7 Score=42.34 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHh-cCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHH
Q psy3462 253 SQISMMNQVSNLF-EQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLAL 308 (795)
Q Consensus 253 ~Q~~mm~~i~~~l-~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlay 308 (795)
+|...++.+.+++ ..+ ...+.++.||+|||||...
T Consensus 18 g~~~~~~~l~~~~~~~~---------------------~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPR---------------------DLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp SCHHHHHHHHTTTTCTT---------------------CCCCEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHhhCC---------------------CCCeEEEECCCCCCHHHHH
Confidence 4566677777766 432 1245899999999999643
No 294
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.29 E-value=4.9 Score=44.87 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=13.4
Q ss_pred CcEEEECCCCCchHH
Q psy3462 40 KNCLLESPTGSGKTL 54 (795)
Q Consensus 40 ~~~llEAPTGTGKTL 54 (795)
..++|.||+|||||.
T Consensus 78 ~~lLL~GppGtGKTt 92 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTT 92 (516)
T ss_dssp SEEEEECSTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 579999999999993
No 295
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=59.80 E-value=4.4 Score=43.63 Aligned_cols=18 Identities=33% Similarity=0.678 Sum_probs=15.9
Q ss_pred cCcEEEeCCCCCChhHHH
Q psy3462 291 AKNCLLESPTGSGKTLAL 308 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTlay 308 (795)
..|+++-||||+|||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 478999999999999864
No 296
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=59.77 E-value=4.9 Score=44.89 Aligned_cols=15 Identities=60% Similarity=0.791 Sum_probs=13.5
Q ss_pred CcEEEECCCCCchHH
Q psy3462 40 KNCLLESPTGSGKTL 54 (795)
Q Consensus 40 ~~~llEAPTGTGKTL 54 (795)
.++++.+|+|||||.
T Consensus 51 ~~iLl~GppGtGKT~ 65 (444)
T 1g41_A 51 KNILMIGPTGVGKTE 65 (444)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred ceEEEEcCCCCCHHH
Confidence 579999999999993
No 297
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=59.72 E-value=3.5 Score=37.18 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=13.0
Q ss_pred CcEEEeCCCCCChhH
Q psy3462 292 KNCLLESPTGSGKTL 306 (795)
Q Consensus 292 ~~~l~EaPTGTGKTl 306 (795)
.++++.||+|+|||-
T Consensus 2 ~~I~l~G~~GsGKsT 16 (179)
T 3lw7_A 2 KVILITGMPGSGKSE 16 (179)
T ss_dssp CEEEEECCTTSCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 367899999999995
No 298
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=59.53 E-value=3.8 Score=45.96 Aligned_cols=18 Identities=44% Similarity=0.717 Sum_probs=15.1
Q ss_pred ccCcEEEeCCCCCChhHH
Q psy3462 290 KAKNCLLESPTGSGKTLA 307 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTla 307 (795)
....++|.||+|||||+.
T Consensus 237 ~~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CCCEEEEECSTTSSHHHH
T ss_pred CCCcEEEECcCCCCHHHH
Confidence 346799999999999963
No 299
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=59.52 E-value=4.2 Score=41.24 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=12.4
Q ss_pred CcEEEECCCCCchH
Q psy3462 40 KNCLLESPTGSGKT 53 (795)
Q Consensus 40 ~~~llEAPTGTGKT 53 (795)
..++|.+|||+|||
T Consensus 35 ~~ilI~GpsGsGKS 48 (205)
T 2qmh_A 35 LGVLITGDSGVGKS 48 (205)
T ss_dssp EEEEEECCCTTTTH
T ss_pred EEEEEECCCCCCHH
Confidence 45899999999998
No 300
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.43 E-value=3.9 Score=41.16 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.6
Q ss_pred CcEEEeCCCCCChhHH
Q psy3462 292 KNCLLESPTGSGKTLA 307 (795)
Q Consensus 292 ~~~l~EaPTGTGKTla 307 (795)
.++++.||+|||||..
T Consensus 43 ~~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTS 58 (323)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 4599999999999953
No 301
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=59.38 E-value=3.8 Score=38.74 Aligned_cols=17 Identities=41% Similarity=0.716 Sum_probs=14.8
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.+.++.|.||+|+|||-
T Consensus 6 ~g~ii~l~Gp~GsGKST 22 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTS 22 (205)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 46788999999999995
No 302
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=59.21 E-value=4.1 Score=42.08 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHH
Q psy3462 253 SQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLA 307 (795)
Q Consensus 253 ~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTla 307 (795)
+|...++.+.+++..+ .....+++.||.|||||..
T Consensus 20 g~~~~~~~L~~~l~~~--------------------~~~~~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 20 GQEHVLTALANGLSLG--------------------RIHHAYLFSGTRGVGKTSI 54 (373)
T ss_dssp SCHHHHHHHHHHHHHT--------------------CCCSEEEEESCTTSSHHHH
T ss_pred CcHHHHHHHHHHHHhC--------------------CCCeEEEEECCCCCCHHHH
Confidence 4666667777766532 0123478999999999954
No 303
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=58.74 E-value=3.9 Score=38.66 Aligned_cols=17 Identities=47% Similarity=0.831 Sum_probs=15.0
Q ss_pred hcCCcEEEECCCCCchH
Q psy3462 37 NKAKNCLLESPTGSGKT 53 (795)
Q Consensus 37 ~~~~~~llEAPTGTGKT 53 (795)
..+..+.|.||+|+|||
T Consensus 5 ~~g~ii~l~Gp~GsGKS 21 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKT 21 (205)
T ss_dssp CCCCEEEEECCTTSCHH
T ss_pred CCCcEEEEECcCCCCHH
Confidence 45678999999999999
No 304
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=58.65 E-value=7.4 Score=39.83 Aligned_cols=33 Identities=21% Similarity=0.106 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHhcCC--cE-EEECCCCCchHH
Q psy3462 22 YSSCKILHLQVIQGCNKAK--NC-LLESPTGSGKTL 54 (795)
Q Consensus 22 ~~~Q~~mm~~i~~al~~~~--~~-llEAPTGTGKTL 54 (795)
.-+|.+.++.+.+.+..+. ++ ++-+|+|||||.
T Consensus 28 ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~ 63 (324)
T 3u61_B 28 CILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTT 63 (324)
T ss_dssp SCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHH
T ss_pred HhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHH
Confidence 3466667778888887664 45 555669999993
No 305
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=58.65 E-value=3.9 Score=38.36 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCcEEEECCCCCchH
Q psy3462 30 LQVIQGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 30 ~~i~~al~~~~~~llEAPTGTGKT 53 (795)
......+.....++|.+|.|+|||
T Consensus 3 ~~~~~~~~~~~~I~l~G~~GsGKs 26 (199)
T 2bwj_A 3 GGFMEDLRKCKIIFIIGGPGSGKG 26 (199)
T ss_dssp -CHHHHHHHSCEEEEEECTTSSHH
T ss_pred cccccccCCCCEEEEECCCCCCHH
Confidence 333444556678999999999999
No 306
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=58.59 E-value=3.9 Score=39.70 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.7
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.+.++++-||+|+|||-
T Consensus 7 ~g~~i~l~GpsGsGKsT 23 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGT 23 (208)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 36789999999999984
No 307
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=58.53 E-value=7.6 Score=36.84 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=17.3
Q ss_pred hccccCcEEEeCCCCCChhHH
Q psy3462 287 GCNKAKNCLLESPTGSGKTLA 307 (795)
Q Consensus 287 al~~~~~~l~EaPTGTGKTla 307 (795)
.+..+.++++-||+|+|||.-
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHH
Confidence 355678899999999999953
No 308
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.47 E-value=3.5 Score=42.49 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHH-hcC--CcEEEECCCCCchHH
Q psy3462 23 SSCKILHLQVIQGC-NKA--KNCLLESPTGSGKTL 54 (795)
Q Consensus 23 ~~Q~~mm~~i~~al-~~~--~~~llEAPTGTGKTL 54 (795)
-+|.+.++.+...+ ..+ .+++|.||+|||||-
T Consensus 17 vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTt 51 (354)
T 1sxj_E 17 SHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKT 51 (354)
T ss_dssp CSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHH
T ss_pred cCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHH
Confidence 35666777777777 444 359999999999993
No 309
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=58.28 E-value=3.8 Score=42.88 Aligned_cols=16 Identities=38% Similarity=0.625 Sum_probs=14.0
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
.+.++|.||+|||||+
T Consensus 45 ~~~iLL~GppGtGKT~ 60 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSY 60 (322)
T ss_dssp CSEEEEESSSSSCHHH
T ss_pred CceEEEECCCCccHHH
Confidence 3678999999999995
No 310
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.12 E-value=5.3 Score=44.45 Aligned_cols=16 Identities=50% Similarity=0.854 Sum_probs=14.1
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
.+-+|+-||.|||||+
T Consensus 215 prGvLLyGPPGTGKTl 230 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTL 230 (434)
T ss_dssp CCEEEEESCTTSSHHH
T ss_pred CCeeEEECcCCCCHHH
Confidence 4668999999999995
No 311
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=58.01 E-value=5.2 Score=44.83 Aligned_cols=16 Identities=50% Similarity=0.835 Sum_probs=14.0
Q ss_pred CCcEEEECCCCCchHH
Q psy3462 39 AKNCLLESPTGSGKTL 54 (795)
Q Consensus 39 ~~~~llEAPTGTGKTL 54 (795)
...++|.+|+|||||+
T Consensus 238 ~~~vLL~GppGtGKT~ 253 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTL 253 (489)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CCcEEEECcCCCCHHH
Confidence 4569999999999994
No 312
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=57.81 E-value=6.5 Score=41.06 Aligned_cols=36 Identities=14% Similarity=0.042 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHH-HH-Hhc----CCcEEE--ECCCCCchHH
Q psy3462 19 FLKYSSCKILHLQVI-QG-CNK----AKNCLL--ESPTGSGKTL 54 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~-~a-l~~----~~~~ll--EAPTGTGKTL 54 (795)
+.-|..+.+.+...+ .. +.. ...++| .||.|||||.
T Consensus 24 l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~ 67 (412)
T 1w5s_A 24 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTT 67 (412)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHH
T ss_pred CCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHH
Confidence 334555654444443 33 322 345888 8999999993
No 313
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=57.64 E-value=7.2 Score=42.11 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=32.5
Q ss_pred eeeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCc--EEEeCCCCCChhHHHH
Q psy3462 242 VKVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKN--CLLESPTGSGKTLALL 309 (795)
Q Consensus 242 ~~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~--~l~EaPTGTGKTlayL 309 (795)
..|.|. |.+-..|.+..+.|...++. +..|-+ ++.-|.||||||...+
T Consensus 52 ~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~--------------------~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 52 HEFKFDKIFDQQDTNVDVFKEVGQLVQS--------------------SLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp EEEEESEEECTTCCHHHHHHHHHHHHGG--------------------GGGTCCEEEEEECCTTSSHHHHHH
T ss_pred eEEeeCEEECCCCCHHHHHHHHHHHHHH--------------------hcCCceeEEEEECCCCCCCcEecc
Confidence 345555 67778898888887655542 223333 6678999999997663
No 314
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=57.31 E-value=4.3 Score=38.33 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.1
Q ss_pred HhcCCcEEEECCCCCchH
Q psy3462 36 CNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 36 l~~~~~~llEAPTGTGKT 53 (795)
+..+..++|.||+|+|||
T Consensus 3 i~~g~~i~l~G~~GsGKS 20 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKG 20 (207)
T ss_dssp -CCCCEEEEECSTTSCHH
T ss_pred CCCCCEEEEECCCCCCHH
Confidence 345778999999999998
No 315
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=57.16 E-value=4.1 Score=41.76 Aligned_cols=18 Identities=44% Similarity=0.604 Sum_probs=15.6
Q ss_pred cccCcEEEeCCCCCChhH
Q psy3462 289 NKAKNCLLESPTGSGKTL 306 (795)
Q Consensus 289 ~~~~~~l~EaPTGTGKTl 306 (795)
..++.+++-||||+|||-
T Consensus 23 ~~g~~v~i~Gp~GsGKST 40 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKST 40 (261)
T ss_dssp CSSEEEEEECSTTCSHHH
T ss_pred CCCCEEEEECCCCccHHH
Confidence 357889999999999985
No 316
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=56.99 E-value=8.9 Score=51.58 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHH
Q psy3462 19 FLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALL 57 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL 57 (795)
+.|.+.+..-+..+++++..+..+++.||||+|||.++=
T Consensus 903 l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 903 FSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 345566666666777888888889999999999997653
No 317
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=56.97 E-value=4.5 Score=38.30 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.0
Q ss_pred cCCcEEEECCCCCchH
Q psy3462 38 KAKNCLLESPTGSGKT 53 (795)
Q Consensus 38 ~~~~~llEAPTGTGKT 53 (795)
.++.++|.+|+|+|||
T Consensus 4 ~g~~i~i~GpsGsGKS 19 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRR 19 (180)
T ss_dssp CCCEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3567899999999999
No 318
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=56.94 E-value=8.7 Score=41.80 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=33.9
Q ss_pred eeCCeeeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhcccc--CcEEEeCCCCCChhHHH
Q psy3462 238 TIGGVKVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKA--KNCLLESPTGSGKTLAL 308 (795)
Q Consensus 238 ~~~~~~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~--~~~l~EaPTGTGKTlay 308 (795)
.+++..|.|. |.+...|.+..+.+..-+ ++.+..| ..++.-|.||||||...
T Consensus 47 ~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl-------------------v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 47 SIAGKVYLFDKVFKPNASQEKVYNEAAKSI-------------------VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp EETTEEEECSEEECTTCCHHHHHHHHTHHH-------------------HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred EECCEEEeCceEecCCCCHHHHHHHhhhhH-------------------HHHHhCCCceEEEeecCCCCCCceEE
Confidence 3456667776 688889988887763222 1112223 33677999999999765
No 319
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.82 E-value=4.2 Score=45.28 Aligned_cols=15 Identities=53% Similarity=0.904 Sum_probs=13.3
Q ss_pred CcEEEECCCCCchHH
Q psy3462 40 KNCLLESPTGSGKTL 54 (795)
Q Consensus 40 ~~~llEAPTGTGKTL 54 (795)
+.+++.||.|||||+
T Consensus 216 rGvLLyGPPGTGKTl 230 (434)
T 4b4t_M 216 KGALMYGPPGTGKTL 230 (434)
T ss_dssp CEEEEESCTTSSHHH
T ss_pred CeeEEECcCCCCHHH
Confidence 469999999999993
No 320
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.70 E-value=5.8 Score=44.02 Aligned_cols=16 Identities=44% Similarity=0.833 Sum_probs=13.8
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
.+-+|+-||.|||||+
T Consensus 206 prGiLL~GPPGtGKT~ 221 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTM 221 (428)
T ss_dssp CCEEEEESCTTTTHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4558999999999995
No 321
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=56.70 E-value=6.7 Score=45.53 Aligned_cols=34 Identities=26% Similarity=0.170 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHhc--CCcEEEECCCCCchHH
Q psy3462 21 KYSSCKILHLQVIQGCNK--AKNCLLESPTGSGKTL 54 (795)
Q Consensus 21 p~~~Q~~mm~~i~~al~~--~~~~llEAPTGTGKTL 54 (795)
|.-++...+..+.+.+.. ..+++|.+|+|||||.
T Consensus 187 ~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~ 222 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTA 222 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHH
T ss_pred CccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHH
Confidence 334556667778888865 4679999999999994
No 322
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=56.17 E-value=4.6 Score=39.19 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=14.3
Q ss_pred cCCcEEEECCCCCchH
Q psy3462 38 KAKNCLLESPTGSGKT 53 (795)
Q Consensus 38 ~~~~~llEAPTGTGKT 53 (795)
.+..++|.||+|+|||
T Consensus 7 ~g~~i~l~GpsGsGKs 22 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKG 22 (208)
T ss_dssp CCCEEEEECCTTSCHH
T ss_pred CCcEEEEECcCCCCHH
Confidence 4677999999999999
No 323
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=56.03 E-value=4.4 Score=37.53 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.9
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+..++++||.|+|||-
T Consensus 3 ~~~I~i~G~~GsGKsT 18 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTT 18 (192)
T ss_dssp CCEEEEECCTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578999999999994
No 324
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=56.01 E-value=8.8 Score=45.68 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=15.7
Q ss_pred cCcEEEeCCCCCChhHHHH
Q psy3462 291 AKNCLLESPTGSGKTLALL 309 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTlayL 309 (795)
+...++.||.|||||....
T Consensus 375 ~~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 3578999999999997543
No 325
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=55.69 E-value=2.6 Score=39.43 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=14.7
Q ss_pred cCCcEEEECCCCCchH
Q psy3462 38 KAKNCLLESPTGSGKT 53 (795)
Q Consensus 38 ~~~~~llEAPTGTGKT 53 (795)
.+..++|.+|+|+|||
T Consensus 35 ~g~~~~l~G~~G~GKT 50 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKS 50 (149)
T ss_dssp CCSEEEEESSSTTTTC
T ss_pred CCCEEEEECCCCCCHH
Confidence 5778999999999998
No 326
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=55.61 E-value=7.3 Score=40.85 Aligned_cols=31 Identities=13% Similarity=-0.066 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhcCC--cEEEECCCCCchHH
Q psy3462 24 SCKILHLQVIQGCNKAK--NCLLESPTGSGKTL 54 (795)
Q Consensus 24 ~Q~~mm~~i~~al~~~~--~~llEAPTGTGKTL 54 (795)
+|.+.++.+.+.+.+++ +.++.||.|+|||-
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt 33 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPRE 33 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHH
Confidence 47788888888998775 58999999999983
No 327
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=55.47 E-value=6.3 Score=43.45 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEECCCCCchH
Q psy3462 23 SSCKILHLQVIQGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 23 ~~Q~~mm~~i~~al~~~~~~llEAPTGTGKT 53 (795)
+.+...+..+. ...+..++|-+|||+|||
T Consensus 153 ~~~~~~L~~l~--~~~ggii~I~GpnGSGKT 181 (418)
T 1p9r_A 153 AHNHDNFRRLI--KRPHGIILVTGPTGSGKS 181 (418)
T ss_dssp HHHHHHHHHHH--TSSSEEEEEECSTTSCHH
T ss_pred HHHHHHHHHHH--HhcCCeEEEECCCCCCHH
Confidence 34555555552 245567899999999999
No 328
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=55.47 E-value=8.1 Score=44.81 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHH
Q psy3462 247 PVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLAL 308 (795)
Q Consensus 247 py~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlay 308 (795)
||+|.+.|-..+..+.+.+..+ .+..++.+.||+|||+.+
T Consensus 6 ~~~~~~~q~~ai~~l~~~~~~~----------------------~~~~~l~g~tgs~kt~~~ 45 (664)
T 1c4o_A 6 GPSPKGDQPKAIAGLVEALRDG----------------------ERFVTLLGATGTGKTVTM 45 (664)
T ss_dssp SCCCCTTHHHHHHHHHHHHHTT----------------------CSEEEEEECTTSCHHHHH
T ss_pred CCCCCCCChHHHHHHHHHHhcC----------------------CCcEEEEcCCCcHHHHHH
Confidence 5899999999999888777642 234678899999999755
No 329
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=55.46 E-value=9.7 Score=43.60 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHHH
Q psy3462 21 KYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSV 60 (795)
Q Consensus 21 p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~pa 60 (795)
+.+.|++.+.. .+.+++|.||.|||||-...-=+
T Consensus 3 L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri 36 (673)
T 1uaa_A 3 LNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKI 36 (673)
T ss_dssp CCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHH
Confidence 45778544432 36789999999999996554433
No 330
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=55.45 E-value=13 Score=42.59 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHH
Q psy3462 247 PVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLA 307 (795)
Q Consensus 247 py~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTla 307 (795)
++..-+.|.+.+..+. .+++.++.||.|||||..
T Consensus 187 ~~~L~~~Q~~Av~~~~---------------------------~~~~~~I~G~pGTGKTt~ 220 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA---------------------------GHRLVVLTGGPGTGKSTT 220 (574)
T ss_dssp TTTCCHHHHHHHHHHT---------------------------TCSEEEEECCTTSCHHHH
T ss_pred cCCCCHHHHHHHHHHH---------------------------hCCEEEEEcCCCCCHHHH
Confidence 6667788987766542 247899999999999954
No 331
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=55.42 E-value=4.6 Score=43.06 Aligned_cols=16 Identities=50% Similarity=0.808 Sum_probs=14.3
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
..++||.||+|||||.
T Consensus 148 ~~~vLL~GppGtGKT~ 163 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTM 163 (389)
T ss_dssp CSEEEEESSTTSCHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4689999999999995
No 332
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.38 E-value=6.3 Score=43.91 Aligned_cols=16 Identities=56% Similarity=0.868 Sum_probs=14.0
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
.+-+|+-||.|||||+
T Consensus 215 prGvLL~GPPGtGKTl 230 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTL 230 (437)
T ss_dssp CCEEEEESCTTSSHHH
T ss_pred CCeEEEECCCCCcHHH
Confidence 4668999999999996
No 333
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=55.38 E-value=4.8 Score=37.59 Aligned_cols=17 Identities=41% Similarity=0.470 Sum_probs=14.8
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
...++++.||+|+|||.
T Consensus 10 ~~~~i~i~G~~GsGKst 26 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTT 26 (180)
T ss_dssp CCCCEEEECSTTSSHHH
T ss_pred cCCeEEEEeCCCCCHHH
Confidence 45689999999999995
No 334
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=55.10 E-value=9 Score=36.92 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=16.6
Q ss_pred ccccCcEEEeCCCCCChhH
Q psy3462 288 CNKAKNCLLESPTGSGKTL 306 (795)
Q Consensus 288 l~~~~~~l~EaPTGTGKTl 306 (795)
+..+...++.|++|+|||.
T Consensus 27 l~~G~l~~i~G~pG~GKT~ 45 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTT 45 (251)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred CCCCeEEEEEeCCCCCHHH
Confidence 5567899999999999995
No 335
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=55.05 E-value=7.9 Score=39.11 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=21.7
Q ss_pred ccCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 290 KAKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
.+.+.++-||+|+|||.++|--+..+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4678999999999999887666555443
No 336
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=55.00 E-value=8.2 Score=37.23 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.7
Q ss_pred ccccCcEEEeCCCCCChhHHH
Q psy3462 288 CNKAKNCLLESPTGSGKTLAL 308 (795)
Q Consensus 288 l~~~~~~l~EaPTGTGKTlay 308 (795)
+..+.+.++.||+|+|||.-.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 556789999999999999643
No 337
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=54.98 E-value=9.6 Score=39.44 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.5
Q ss_pred cCcEEEeCCCCCChhHH
Q psy3462 291 AKNCLLESPTGSGKTLA 307 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTla 307 (795)
..+++|.||+|||||..
T Consensus 45 ~~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 45799999999999963
No 338
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=54.90 E-value=7.6 Score=39.27 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=17.0
Q ss_pred hcCCcEEEECCCCCchHHHHHHH
Q psy3462 37 NKAKNCLLESPTGSGKTLALLCS 59 (795)
Q Consensus 37 ~~~~~~llEAPTGTGKTLAyL~p 59 (795)
..+...++-+|+|+|||.+.|--
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~ 32 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRR 32 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHH
Confidence 44567888999999999665544
No 339
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.82 E-value=4.9 Score=44.47 Aligned_cols=15 Identities=53% Similarity=0.893 Sum_probs=13.5
Q ss_pred CcEEEECCCCCchHH
Q psy3462 40 KNCLLESPTGSGKTL 54 (795)
Q Consensus 40 ~~~llEAPTGTGKTL 54 (795)
+.+++.||.|||||+
T Consensus 183 rGvLL~GPPGTGKTl 197 (405)
T 4b4t_J 183 KGVILYGPPGTGKTL 197 (405)
T ss_dssp CCEEEESCSSSSHHH
T ss_pred CceEEeCCCCCCHHH
Confidence 569999999999993
No 340
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=54.60 E-value=10 Score=40.56 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=32.7
Q ss_pred eCCeeeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhcccc--CcEEEeCCCCCChhHHH
Q psy3462 239 IGGVKVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKA--KNCLLESPTGSGKTLAL 308 (795)
Q Consensus 239 ~~~~~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~--~~~l~EaPTGTGKTlay 308 (795)
+++..|.|. |.+...|.+..+.+..-+ ++.+.+| ..++.-|.||||||...
T Consensus 41 ~~~~~f~FD~Vf~~~~sQ~~Vy~~~~~pl-------------------v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 41 IASKPYAFDRVFQSSTSQEQVYNDCAKKI-------------------VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp ETTEEEECSEEECTTCCHHHHHHHHTHHH-------------------HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred ECCEEEECCeEeCCCCCHHHHHHHHhhhh-------------------HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 345566666 678888988887763211 1122223 33677899999999765
No 341
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=54.60 E-value=11 Score=37.96 Aligned_cols=13 Identities=54% Similarity=0.833 Sum_probs=12.2
Q ss_pred cEEEECCCCCchH
Q psy3462 41 NCLLESPTGSGKT 53 (795)
Q Consensus 41 ~~llEAPTGTGKT 53 (795)
.++|.+|+|||||
T Consensus 75 gvll~Gp~GtGKT 87 (278)
T 1iy2_A 75 GVLLVGPPGVGKT 87 (278)
T ss_dssp EEEEECCTTSSHH
T ss_pred eEEEECCCcChHH
Confidence 4899999999999
No 342
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=54.56 E-value=7.2 Score=42.75 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=13.1
Q ss_pred CcEEEECCCCCchH
Q psy3462 40 KNCLLESPTGSGKT 53 (795)
Q Consensus 40 ~~~llEAPTGTGKT 53 (795)
.+++|.||+|||||
T Consensus 131 ~~lll~Gp~G~GKT 144 (440)
T 2z4s_A 131 NPLFIYGGVGLGKT 144 (440)
T ss_dssp CCEEEECSSSSSHH
T ss_pred CeEEEECCCCCCHH
Confidence 47999999999999
No 343
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.48 E-value=5 Score=44.40 Aligned_cols=17 Identities=47% Similarity=0.823 Sum_probs=14.5
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
..+-+|+-||.|||||+
T Consensus 181 ~prGvLL~GPPGTGKTl 197 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTL 197 (405)
T ss_dssp CCCCEEEESCSSSSHHH
T ss_pred CCCceEEeCCCCCCHHH
Confidence 34668999999999995
No 344
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=54.23 E-value=8.4 Score=45.89 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=18.0
Q ss_pred cCcEEEeCCCCCChhHHHHHHHHHHH
Q psy3462 291 AKNCLLESPTGSGKTLALLCSVLAWQ 316 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTlayL~~~l~~~ 316 (795)
+...++.||.|||||.... .++.++
T Consensus 371 ~~~~lI~GppGTGKT~ti~-~~i~~l 395 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSA-TIVYHL 395 (800)
T ss_dssp SSEEEEECCTTSCHHHHHH-HHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHH-HHHHHH
Confidence 3578999999999997643 334443
No 345
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.01 E-value=4.9 Score=44.74 Aligned_cols=15 Identities=60% Similarity=0.919 Sum_probs=13.4
Q ss_pred CcEEEECCCCCchHH
Q psy3462 40 KNCLLESPTGSGKTL 54 (795)
Q Consensus 40 ~~~llEAPTGTGKTL 54 (795)
+.+++.||.|||||+
T Consensus 216 rGvLL~GPPGtGKTl 230 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTL 230 (437)
T ss_dssp CEEEEESCTTSSHHH
T ss_pred CeEEEECCCCCcHHH
Confidence 469999999999993
No 346
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=53.95 E-value=5 Score=42.58 Aligned_cols=16 Identities=38% Similarity=0.684 Sum_probs=13.8
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
...++|.||+|||||+
T Consensus 84 ~~~iLL~GppGtGKT~ 99 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSY 99 (355)
T ss_dssp CCCEEEECSTTSCHHH
T ss_pred CceEEEECCCCCcHHH
Confidence 3568999999999996
No 347
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=53.95 E-value=5.3 Score=42.27 Aligned_cols=16 Identities=56% Similarity=0.821 Sum_probs=14.2
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
...++|.||+|||||.
T Consensus 117 ~~~vLl~GppGtGKT~ 132 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTL 132 (357)
T ss_dssp CSEEEEESSTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4679999999999996
No 348
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=53.75 E-value=9.8 Score=41.07 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=34.4
Q ss_pred eeeCCeeeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhcccc--CcEEEeCCCCCChhHHH
Q psy3462 237 YTIGGVKVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKA--KNCLLESPTGSGKTLAL 308 (795)
Q Consensus 237 ~~~~~~~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~--~~~l~EaPTGTGKTlay 308 (795)
..+++..|.|. |.+...|.+..+.+..-+ ++.+..| ..++.-|.||||||...
T Consensus 56 ~~~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~pl-------------------v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 56 LIVDQNEFHFDHAFPATISQDEMYQALILPL-------------------VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp EEETTEEEECSEEECTTCCHHHHHHHHTHHH-------------------HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred EEecCcEEEcceEECCCCCHHHHHHhhccch-------------------hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 44566777777 678888988887753222 1122223 33677899999999764
No 349
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=53.70 E-value=6.8 Score=40.11 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHH
Q psy3462 253 SQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLAL 308 (795)
Q Consensus 253 ~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlay 308 (795)
+|...+..+.+.+..+. ....+++-+|+|||||...
T Consensus 30 g~~~~~~~l~~~l~~~~--------------------~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 30 LPAFDKETFKSITSKGK--------------------IPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CCHHHHHHHHHHHHTTC--------------------CCSEEEECSSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHcCC--------------------CCeEEEeeCcCCCCHHHHH
Confidence 55566777777776420 1245677888999999643
No 350
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=53.57 E-value=5.2 Score=35.99 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=12.0
Q ss_pred cEEEECCCCCchH
Q psy3462 41 NCLLESPTGSGKT 53 (795)
Q Consensus 41 ~~llEAPTGTGKT 53 (795)
.++|.||+|+|||
T Consensus 3 ~I~l~G~~GsGKs 15 (179)
T 3lw7_A 3 VILITGMPGSGKS 15 (179)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 5789999999999
No 351
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.47 E-value=5.1 Score=44.50 Aligned_cols=15 Identities=47% Similarity=0.882 Sum_probs=13.1
Q ss_pred CcEEEECCCCCchHH
Q psy3462 40 KNCLLESPTGSGKTL 54 (795)
Q Consensus 40 ~~~llEAPTGTGKTL 54 (795)
+.+++.||.|||||+
T Consensus 207 rGiLL~GPPGtGKT~ 221 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTM 221 (428)
T ss_dssp CEEEEESCTTTTHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 349999999999993
No 352
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=53.37 E-value=8.3 Score=42.15 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=31.7
Q ss_pred eeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccC--cEEEeCCCCCChhHHH
Q psy3462 243 KVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAK--NCLLESPTGSGKTLAL 308 (795)
Q Consensus 243 ~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~--~~l~EaPTGTGKTlay 308 (795)
.|.|. |.+...|.+..+.|...++. +.+|- .++.-|.||||||...
T Consensus 84 ~F~FD~Vf~~~~~Q~~Vy~~v~~lv~~--------------------~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 84 DFSFDRVFPPGSGQDEVFEEIAMLVQS--------------------ALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp EEECSEEECTTCCHHHHHHHHHHHHHG--------------------GGGTCCEEEEEECSTTSSHHHHH
T ss_pred eeeecEEcCCcccchhhhhhHHHHHHH--------------------hcCCCceEEEEeCCCCCCCceEe
Confidence 45555 67888999988887654432 22333 3667899999999765
No 353
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=52.84 E-value=12 Score=38.47 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=13.6
Q ss_pred cEEEeCCCCCChhHH
Q psy3462 293 NCLLESPTGSGKTLA 307 (795)
Q Consensus 293 ~~l~EaPTGTGKTla 307 (795)
+++|.||+|||||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999964
No 354
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=52.80 E-value=4.7 Score=40.86 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchH
Q psy3462 19 FLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 19 ~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKT 53 (795)
|..|+.+. +.+.+ +.. ..++|.||.|+|||
T Consensus 15 ~~gR~~el---~~L~~-l~~-~~v~i~G~~G~GKT 44 (357)
T 2fna_A 15 FFDREKEI---EKLKG-LRA-PITLVLGLRRTGKS 44 (357)
T ss_dssp SCCCHHHH---HHHHH-TCS-SEEEEEESTTSSHH
T ss_pred hcChHHHH---HHHHH-hcC-CcEEEECCCCCCHH
Confidence 44455553 33444 544 68999999999999
No 355
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=52.75 E-value=8.1 Score=42.50 Aligned_cols=47 Identities=21% Similarity=0.389 Sum_probs=31.4
Q ss_pred eeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccC--cEEEeCCCCCChhHHHH
Q psy3462 243 KVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAK--NCLLESPTGSGKTLALL 309 (795)
Q Consensus 243 ~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~--~~l~EaPTGTGKTlayL 309 (795)
.|.|. |.|...|.+..+.|...++. +..|- .++.-|.||||||...+
T Consensus 109 ~F~FD~VF~~~~~Q~~Vf~~v~~lv~~--------------------~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 109 EFKFDKIFDQQDTNVDVFKEVGQLVQS--------------------SLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp EEEESEEECTTCCHHHHHHHHHHHHHH--------------------HHTTCCEEEEEESCTTSSHHHHHH
T ss_pred EEEcCEEECCCCchHHHHHHHHHHHHH--------------------HhCCcceEEEEECCCCCCCceEeC
Confidence 44555 67788898888877654431 22233 36678999999998763
No 356
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=52.69 E-value=4.6 Score=41.37 Aligned_cols=18 Identities=44% Similarity=0.604 Sum_probs=16.3
Q ss_pred HhcCCcEEEECCCCCchH
Q psy3462 36 CNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 36 l~~~~~~llEAPTGTGKT 53 (795)
+..++.++|.+|||+|||
T Consensus 22 i~~g~~v~i~Gp~GsGKS 39 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKS 39 (261)
T ss_dssp GCSSEEEEEECSTTCSHH
T ss_pred hCCCCEEEEECCCCccHH
Confidence 667788999999999999
No 357
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=52.64 E-value=5.5 Score=37.13 Aligned_cols=16 Identities=38% Similarity=0.383 Sum_probs=13.8
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
..++++.||+|+|||-
T Consensus 5 ~~~i~l~G~~GsGKst 20 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTS 20 (185)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 4578999999999984
No 358
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=52.57 E-value=11 Score=37.99 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=13.6
Q ss_pred CcEEEeCCCCCChhH
Q psy3462 292 KNCLLESPTGSGKTL 306 (795)
Q Consensus 292 ~~~l~EaPTGTGKTl 306 (795)
+++++.||.|+|||-
T Consensus 31 ~~v~i~G~~G~GKT~ 45 (357)
T 2fna_A 31 PITLVLGLRRTGKSS 45 (357)
T ss_dssp SEEEEEESTTSSHHH
T ss_pred CcEEEECCCCCCHHH
Confidence 579999999999995
No 359
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=52.44 E-value=5.7 Score=38.15 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.8
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.+.++++.||+|+|||-
T Consensus 11 ~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCCCEEEECCTTSCHHH
T ss_pred cCCEEEEECCCCCCHHH
Confidence 46789999999999984
No 360
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=52.44 E-value=5.4 Score=36.31 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=12.5
Q ss_pred cEEEeCCCCCChhH
Q psy3462 293 NCLLESPTGSGKTL 306 (795)
Q Consensus 293 ~~l~EaPTGTGKTl 306 (795)
++++.||.|+|||-
T Consensus 3 ~i~l~G~~GsGKsT 16 (173)
T 3kb2_A 3 LIILEGPDCCFKST 16 (173)
T ss_dssp EEEEECSSSSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999994
No 361
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=52.15 E-value=5.1 Score=44.34 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=13.7
Q ss_pred CcEEEeCCCCCChhHH
Q psy3462 292 KNCLLESPTGSGKTLA 307 (795)
Q Consensus 292 ~~~l~EaPTGTGKTla 307 (795)
..++|.||+|||||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 4689999999999953
No 362
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=52.04 E-value=7.1 Score=46.32 Aligned_cols=36 Identities=25% Similarity=0.080 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcC--CcEEEECCCCCchH
Q psy3462 18 YFLKYSSCKILHLQVIQGCNKA--KNCLLESPTGSGKT 53 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~al~~~--~~~llEAPTGTGKT 53 (795)
.+.|.-++.+.+..+.+.+..+ .+++|.||+|||||
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT 205 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKT 205 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHH
T ss_pred CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHH
Confidence 3445556667788888888664 47999999999999
No 363
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=51.93 E-value=5.2 Score=43.30 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=13.8
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+.+++|-||||||||-
T Consensus 40 ~~lIvI~GPTgsGKTt 55 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSR 55 (339)
T ss_dssp CEEEEEECSTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 3578999999999994
No 364
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=51.77 E-value=6 Score=37.84 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=14.8
Q ss_pred HHhcCCcEEEECCCCCchH
Q psy3462 35 GCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 35 al~~~~~~llEAPTGTGKT 53 (795)
.+..+..++|.+|+|+|||
T Consensus 21 ~~~~~~~i~l~G~~GsGKs 39 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKT 39 (199)
T ss_dssp ---CCCEEEEECCTTSCHH
T ss_pred ecCCCCEEEEEcCCCCCHH
Confidence 3456778999999999999
No 365
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=51.73 E-value=9.7 Score=36.10 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=17.5
Q ss_pred hccccCcEEEeCCCCCChhHH
Q psy3462 287 GCNKAKNCLLESPTGSGKTLA 307 (795)
Q Consensus 287 al~~~~~~l~EaPTGTGKTla 307 (795)
.+..+...++-||+|+|||.-
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTL 36 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHH
Confidence 355678999999999999953
No 366
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=51.70 E-value=8.6 Score=41.49 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=31.7
Q ss_pred eeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCc--EEEeCCCCCChhHHHH
Q psy3462 243 KVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKN--CLLESPTGSGKTLALL 309 (795)
Q Consensus 243 ~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~--~l~EaPTGTGKTlayL 309 (795)
.|.|. |.|-..|.+..+.|...++. +.+|-+ ++.-|.||||||....
T Consensus 54 ~f~FD~Vf~~~~~Q~~vf~~v~~lv~~--------------------~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 54 NFQFDMIFEPSHTNKEIFEEIRQLVQS--------------------SLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp EEEESEEECTTCCHHHHHHHHHHHHHG--------------------GGTTCEEEEEEECSTTSSHHHHHH
T ss_pred eeecCEEECCCccHHHHHHHHHHHHHH--------------------HHCCcceeEEEeCCCCCCCceEeC
Confidence 34454 67778898888887654432 223433 5668999999998763
No 367
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=51.53 E-value=5.3 Score=39.06 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=11.6
Q ss_pred cccCcEEEeCCCCCChhH
Q psy3462 289 NKAKNCLLESPTGSGKTL 306 (795)
Q Consensus 289 ~~~~~~l~EaPTGTGKTl 306 (795)
..+.++.|-||+|+|||-
T Consensus 25 ~~G~ii~l~Gp~GsGKST 42 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTT 42 (231)
T ss_dssp ECCCEEEEECSCC----C
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457789999999999985
No 368
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=51.50 E-value=5.9 Score=37.91 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.7
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.+.++++.||+|+|||-
T Consensus 24 ~~~~i~l~G~~GsGKsT 40 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTT 40 (199)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCCEEEEEcCCCCCHHH
Confidence 45789999999999985
No 369
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=51.22 E-value=9.7 Score=51.23 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=32.4
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHH
Q psy3462 12 YLNEPNYFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTL 54 (795)
Q Consensus 12 ~~~~~~~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTL 54 (795)
|+.+.+.+--+|-=......+..|++.+..++++||+|||||-
T Consensus 618 YlG~~~rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe 660 (2695)
T 4akg_A 618 YIGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTE 660 (2695)
T ss_dssp CCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHH
T ss_pred ccCCCCcceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHH
Confidence 3344444444566566777888899999999999999999994
No 370
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=50.86 E-value=6.6 Score=38.78 Aligned_cols=14 Identities=50% Similarity=0.729 Sum_probs=12.5
Q ss_pred cEEEeCCCCCChhH
Q psy3462 293 NCLLESPTGSGKTL 306 (795)
Q Consensus 293 ~~l~EaPTGTGKTl 306 (795)
.+++.||+|||||.
T Consensus 51 g~ll~G~~G~GKTt 64 (254)
T 1ixz_A 51 GVLLVGPPGVGKTH 64 (254)
T ss_dssp EEEEECCTTSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 38999999999995
No 371
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=50.49 E-value=8.4 Score=41.18 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.6
Q ss_pred cccCcEEEeCCCCCChhH
Q psy3462 289 NKAKNCLLESPTGSGKTL 306 (795)
Q Consensus 289 ~~~~~~l~EaPTGTGKTl 306 (795)
..+.++++-||||+|||-
T Consensus 173 ~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HTTCCEEEEESSSSCHHH
T ss_pred hcCCEEEEECCCCCCHHH
Confidence 357899999999999994
No 372
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=50.40 E-value=6.5 Score=37.95 Aligned_cols=16 Identities=31% Similarity=0.740 Sum_probs=13.2
Q ss_pred cCCcEEEECCCCCchH
Q psy3462 38 KAKNCLLESPTGSGKT 53 (795)
Q Consensus 38 ~~~~~llEAPTGTGKT 53 (795)
.++.++|.||+|+|||
T Consensus 3 ~g~~i~lvGpsGaGKS 18 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKS 18 (198)
T ss_dssp --CCEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678999999999998
No 373
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=50.19 E-value=5.5 Score=42.88 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=13.5
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+.+++|-||||+|||-
T Consensus 3 ~~~i~i~GptgsGKt~ 18 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTK 18 (322)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CcEEEEECCCcCCHHH
Confidence 3568899999999994
No 374
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=50.19 E-value=6.7 Score=36.56 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=13.5
Q ss_pred CCcEEEECCCCCchH
Q psy3462 39 AKNCLLESPTGSGKT 53 (795)
Q Consensus 39 ~~~~llEAPTGTGKT 53 (795)
...+++.+|+|+|||
T Consensus 5 ~~~i~l~G~~GsGKs 19 (185)
T 3trf_A 5 LTNIYLIGLMGAGKT 19 (185)
T ss_dssp CCEEEEECSTTSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 457999999999999
No 375
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=50.15 E-value=13 Score=41.81 Aligned_cols=15 Identities=60% Similarity=0.913 Sum_probs=13.2
Q ss_pred CcEEEECCCCCchHH
Q psy3462 40 KNCLLESPTGSGKTL 54 (795)
Q Consensus 40 ~~~llEAPTGTGKTL 54 (795)
..++|.+|+|||||+
T Consensus 50 ~gvLL~GppGtGKT~ 64 (476)
T 2ce7_A 50 KGILLVGPPGTGKTL 64 (476)
T ss_dssp SEEEEECCTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 459999999999994
No 376
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=49.98 E-value=6.5 Score=38.95 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=16.8
Q ss_pred ccccCcEEEeCCCCCChhHHH
Q psy3462 288 CNKAKNCLLESPTGSGKTLAL 308 (795)
Q Consensus 288 l~~~~~~l~EaPTGTGKTlay 308 (795)
+..+.++.+-||+|+|||.-+
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 345788999999999998533
No 377
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.95 E-value=8.5 Score=43.40 Aligned_cols=17 Identities=53% Similarity=0.784 Sum_probs=14.6
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
-.+-+||-||.|||||+
T Consensus 242 pprGILLyGPPGTGKTl 258 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTL 258 (467)
T ss_dssp CCSEEEECSCTTSSHHH
T ss_pred CCCceEeeCCCCCcHHH
Confidence 45678999999999995
No 378
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=49.88 E-value=7.1 Score=38.37 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=15.0
Q ss_pred HHHhcCCcEEEECCCCCchH
Q psy3462 34 QGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 34 ~al~~~~~~llEAPTGTGKT 53 (795)
=.+..++.+.|.+|+|+|||
T Consensus 18 l~i~~G~~~~lvGpsGsGKS 37 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKG 37 (218)
T ss_dssp ----CCCCEEEECSTTSSHH
T ss_pred eecCCCCEEEEECCCCCCHH
Confidence 34567888999999999999
No 379
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=49.86 E-value=9.2 Score=36.96 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=18.6
Q ss_pred hccccCcEEEeCCCCCChhHHHH
Q psy3462 287 GCNKAKNCLLESPTGSGKTLALL 309 (795)
Q Consensus 287 al~~~~~~l~EaPTGTGKTlayL 309 (795)
.+..+.++.+-||+|+|||.-+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHH
Confidence 35678899999999999996443
No 380
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.77 E-value=18 Score=49.57 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHH
Q psy3462 18 YFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALL 57 (795)
Q Consensus 18 ~~~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL 57 (795)
++.|.+.+..=+-.+++.+.-...+++-||||+|||-++=
T Consensus 885 ~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 885 HLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp TCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 4456666666666777777777779999999999998764
No 381
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=49.55 E-value=5.6 Score=37.17 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.4
Q ss_pred cccCcEEEeCCCCCChhH
Q psy3462 289 NKAKNCLLESPTGSGKTL 306 (795)
Q Consensus 289 ~~~~~~l~EaPTGTGKTl 306 (795)
..+.++++-||+|+|||-
T Consensus 7 ~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CTTEEEEEEECTTSCHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 456789999999999984
No 382
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.52 E-value=12 Score=51.08 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHH
Q psy3462 20 LKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTL 54 (795)
Q Consensus 20 ~p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTL 54 (795)
-|+..=..+..-+...+..++++++.||||||||.
T Consensus 1285 VPT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1285 IPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHH
T ss_pred ecchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHH
Confidence 35543334444555667888999999999999993
No 383
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=49.42 E-value=6.1 Score=37.20 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.0
Q ss_pred cccCcEEEeCCCCCChhHH
Q psy3462 289 NKAKNCLLESPTGSGKTLA 307 (795)
Q Consensus 289 ~~~~~~l~EaPTGTGKTla 307 (795)
..+..+.+-||+|+|||--
T Consensus 7 ~~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp ESSEEEEEECCTTSCHHHH
T ss_pred CCCEEEEEECCCCCCHHHH
Confidence 3578899999999999953
No 384
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=49.42 E-value=6.9 Score=36.87 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=14.1
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+..++++||.|+|||-
T Consensus 4 ~~~I~l~G~~GsGKsT 19 (204)
T 2v54_A 4 GALIVFEGLDKSGKTT 19 (204)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEEcCCCCCHHH
Confidence 5678999999999984
No 385
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=49.24 E-value=6.9 Score=40.94 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=14.0
Q ss_pred CcEEEeCCCCCChhHH
Q psy3462 292 KNCLLESPTGSGKTLA 307 (795)
Q Consensus 292 ~~~l~EaPTGTGKTla 307 (795)
.++++.||+|||||.-
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999853
No 386
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=49.17 E-value=11 Score=41.04 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=30.1
Q ss_pred eeeccC--CCCCHHHHHHHHHHHH-HhcCCccccccchhhhhHHHHHhhccccCc--EEEeCCCCCChhHHH
Q psy3462 242 VKVEFP--VKAYPSQISMMNQVSN-LFEQPNHFLKYSSCKILHLQVIQGCNKAKN--CLLESPTGSGKTLAL 308 (795)
Q Consensus 242 ~~~~fp--y~~yp~Q~~mm~~i~~-~l~~~~~~~~~~~~~~~~~~~i~al~~~~~--~l~EaPTGTGKTlay 308 (795)
..|.|. |.+...|.+..+.+.. .++ ..+..+.+ ++.-|.||||||...
T Consensus 50 ~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~-------------------~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 50 HEFIVDKVFDDTVDNFTVYENTIKPLII-------------------DLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp EEEECSEEECTTCCHHHHHHHHTHHHHH-------------------HHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred ceEEeeeEecCCCCHHHHHHHHhhhhhh-------------------hhccCCceeEEEeeCCCCCCCCEEE
Confidence 445565 6777889887776432 221 11222444 578999999999765
No 387
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.68 E-value=11 Score=42.10 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=14.6
Q ss_pred CcEEEeCCCCCChhHHH
Q psy3462 292 KNCLLESPTGSGKTLAL 308 (795)
Q Consensus 292 ~~~l~EaPTGTGKTlay 308 (795)
..++|.||+|||||...
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57999999999999643
No 388
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=48.56 E-value=6.7 Score=42.98 Aligned_cols=16 Identities=38% Similarity=0.625 Sum_probs=14.0
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
.+.++|.||+|||||+
T Consensus 167 ~~~vLL~GppGtGKT~ 182 (444)
T 2zan_A 167 WRGILLFGPPGTGKSY 182 (444)
T ss_dssp CSEEEEECSTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 3678999999999995
No 389
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=48.55 E-value=7.3 Score=37.58 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=15.3
Q ss_pred HHhcCCcEEEECCCCCchH
Q psy3462 35 GCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 35 al~~~~~~llEAPTGTGKT 53 (795)
.+..++.+.|.+|+|+|||
T Consensus 16 ~i~~Gei~~l~GpnGsGKS 34 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKS 34 (207)
T ss_dssp ---CCCEEEEECSTTSSHH
T ss_pred CCCCCCEEEEECCCCCCHH
Confidence 6778889999999999999
No 390
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=48.53 E-value=7 Score=38.89 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=15.0
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.++.++|.||+|+|||-
T Consensus 18 ~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSH 34 (197)
T ss_dssp SCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECcCCCCHHH
Confidence 56789999999999995
No 391
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=48.49 E-value=6 Score=38.31 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.1
Q ss_pred HHhcCCcEEEECCCCCchHH
Q psy3462 35 GCNKAKNCLLESPTGSGKTL 54 (795)
Q Consensus 35 al~~~~~~llEAPTGTGKTL 54 (795)
.+..++.+.|.+|+|+|||-
T Consensus 26 gi~~G~~~~l~GpnGsGKST 45 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTT 45 (251)
T ss_dssp SEETTCEEEEECCTTSSHHH
T ss_pred CCCCCcEEEEEeCCCCCHHH
Confidence 45678889999999999993
No 392
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=48.25 E-value=6.6 Score=42.49 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=12.8
Q ss_pred CcEEEECCCCCchH
Q psy3462 40 KNCLLESPTGSGKT 53 (795)
Q Consensus 40 ~~~llEAPTGTGKT 53 (795)
..++|.||||+|||
T Consensus 41 ~lIvI~GPTgsGKT 54 (339)
T 3a8t_A 41 KLLVLMGATGTGKS 54 (339)
T ss_dssp EEEEEECSTTSSHH
T ss_pred ceEEEECCCCCCHH
Confidence 46899999999999
No 393
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.15 E-value=10 Score=42.47 Aligned_cols=16 Identities=44% Similarity=0.692 Sum_probs=14.1
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
.+-+|+-||.|||||+
T Consensus 216 prGvLLyGPPGTGKTl 231 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTL 231 (437)
T ss_dssp CSEEEEESSTTTTHHH
T ss_pred CCCCceECCCCchHHH
Confidence 4668999999999996
No 394
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=47.95 E-value=17 Score=38.01 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=13.7
Q ss_pred cEEEECCCCCchHHHH
Q psy3462 41 NCLLESPTGSGKTLAL 56 (795)
Q Consensus 41 ~~llEAPTGTGKTLAy 56 (795)
.++|-+|.|||||+-.
T Consensus 106 ~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIA 121 (267)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999543
No 395
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=47.81 E-value=11 Score=42.87 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=15.3
Q ss_pred cCcEEEeCCCCCChhHHH
Q psy3462 291 AKNCLLESPTGSGKTLAL 308 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTlay 308 (795)
+.+++|.||+|||||...
T Consensus 60 g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCEEEEEeCCCCCHHHHH
Confidence 578999999999999543
No 396
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=47.73 E-value=13 Score=38.78 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=14.7
Q ss_pred CcEEEeCCCCCChhHHHH
Q psy3462 292 KNCLLESPTGSGKTLALL 309 (795)
Q Consensus 292 ~~~l~EaPTGTGKTlayL 309 (795)
..+++-||.|||||+-..
T Consensus 105 n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 458999999999996443
No 397
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=47.65 E-value=9.6 Score=37.74 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=18.6
Q ss_pred HHHHHhcCCcEEEECCCCCchH
Q psy3462 32 VIQGCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 32 i~~al~~~~~~llEAPTGTGKT 53 (795)
+.+.+..++.+.|.+|.|+|||
T Consensus 15 ~l~~i~~Ge~~~liG~nGsGKS 36 (208)
T 3b85_A 15 YVDAIDTNTIVFGLGPAGSGKT 36 (208)
T ss_dssp HHHHHHHCSEEEEECCTTSSTT
T ss_pred HHHhccCCCEEEEECCCCCCHH
Confidence 4445688899999999999998
No 398
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=47.58 E-value=6.3 Score=36.70 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=14.0
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+..++++|+.|+|||-
T Consensus 5 ~~~I~l~G~~GsGKST 20 (193)
T 2rhm_A 5 PALIIVTGHPATGKTT 20 (193)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4678999999999985
No 399
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=47.55 E-value=7.7 Score=35.88 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=13.4
Q ss_pred CCcEEEECCCCCchH
Q psy3462 39 AKNCLLESPTGSGKT 53 (795)
Q Consensus 39 ~~~~llEAPTGTGKT 53 (795)
+..++|++|.|+|||
T Consensus 3 ~~~I~i~G~~GsGKs 17 (192)
T 1kht_A 3 NKVVVVTGVPGVGST 17 (192)
T ss_dssp CCEEEEECCTTSCHH
T ss_pred CeEEEEECCCCCCHH
Confidence 457899999999999
No 400
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.50 E-value=6.4 Score=44.38 Aligned_cols=16 Identities=56% Similarity=0.846 Sum_probs=13.7
Q ss_pred CCcEEEECCCCCchHH
Q psy3462 39 AKNCLLESPTGSGKTL 54 (795)
Q Consensus 39 ~~~~llEAPTGTGKTL 54 (795)
-+.+||.+|.|||||+
T Consensus 243 prGILLyGPPGTGKTl 258 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTL 258 (467)
T ss_dssp CSEEEECSCTTSSHHH
T ss_pred CCceEeeCCCCCcHHH
Confidence 3569999999999993
No 401
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=47.49 E-value=7 Score=36.55 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=12.3
Q ss_pred cEEEeCCCCCChhH
Q psy3462 293 NCLLESPTGSGKTL 306 (795)
Q Consensus 293 ~~l~EaPTGTGKTl 306 (795)
.++++|+.|+|||-
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 47899999999994
No 402
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=47.48 E-value=7.5 Score=38.19 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.1
Q ss_pred cccCcEEEeCCCCCChhH
Q psy3462 289 NKAKNCLLESPTGSGKTL 306 (795)
Q Consensus 289 ~~~~~~l~EaPTGTGKTl 306 (795)
..+..+.|-||+|+|||-
T Consensus 21 ~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp -CCCCEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457889999999999984
No 403
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=47.42 E-value=6.7 Score=36.31 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.6
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+..++++|+.|+|||-
T Consensus 3 ~~~I~l~G~~GsGKsT 18 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGT 18 (196)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 3568999999999984
No 404
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=47.26 E-value=6.4 Score=36.60 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=13.9
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+..++++||.|+|||-
T Consensus 4 g~~I~l~G~~GsGKST 19 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGT 19 (186)
T ss_dssp EEEEEEECCTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578999999999994
No 405
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=47.22 E-value=7.1 Score=44.73 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=13.3
Q ss_pred cEEEeCCCCCChhH
Q psy3462 293 NCLLESPTGSGKTL 306 (795)
Q Consensus 293 ~~l~EaPTGTGKTl 306 (795)
++++.||+|||||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999995
No 406
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=47.18 E-value=7.7 Score=38.58 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=14.0
Q ss_pred cCCcEEEECCCCCchH
Q psy3462 38 KAKNCLLESPTGSGKT 53 (795)
Q Consensus 38 ~~~~~llEAPTGTGKT 53 (795)
.++.++|.||+|+|||
T Consensus 18 ~g~~ivl~GPSGaGKs 33 (197)
T 3ney_A 18 GRKTLVLIGASGVGRS 33 (197)
T ss_dssp SCCEEEEECCTTSSHH
T ss_pred CCCEEEEECcCCCCHH
Confidence 3567999999999999
No 407
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=47.18 E-value=7 Score=36.81 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=13.8
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+..++++||.|+|||-
T Consensus 4 ~~~I~i~G~~GsGKsT 19 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSS 19 (213)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CeEEEEEcCCCCCHHH
Confidence 4578999999999984
No 408
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=46.91 E-value=7.5 Score=41.66 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=29.4
Q ss_pred eeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccC--cEEEeCCCCCChhHHH
Q psy3462 243 KVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAK--NCLLESPTGSGKTLAL 308 (795)
Q Consensus 243 ~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~--~~l~EaPTGTGKTlay 308 (795)
.|.|. |.+...|.+..+.|...++ .+.+|- .++.-|.||||||...
T Consensus 49 ~f~FD~Vf~~~~~Q~~Vy~~v~~lv~--------------------~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 49 SFELDKVFSPQASQQDVFQEVQALVT--------------------SCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp EEECSEEECTTCCHHHHHTTTHHHHH--------------------HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred EEecCeEeCCCCCcHhHHHHHHHHHH--------------------HHhCCCEEEEEeECCCCCCCcEEE
Confidence 34454 5677888887776543332 122233 3667999999999765
No 409
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=46.77 E-value=7.6 Score=36.79 Aligned_cols=15 Identities=27% Similarity=0.736 Sum_probs=13.0
Q ss_pred CcEEEeCCCCCChhH
Q psy3462 292 KNCLLESPTGSGKTL 306 (795)
Q Consensus 292 ~~~l~EaPTGTGKTl 306 (795)
+++.|-||+|+|||-
T Consensus 2 ~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEESSSSSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 567899999999995
No 410
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=46.71 E-value=7.6 Score=35.27 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=12.0
Q ss_pred cEEEECCCCCchH
Q psy3462 41 NCLLESPTGSGKT 53 (795)
Q Consensus 41 ~~llEAPTGTGKT 53 (795)
.++|.||.|+|||
T Consensus 3 ~i~l~G~~GsGKs 15 (173)
T 3kb2_A 3 LIILEGPDCCFKS 15 (173)
T ss_dssp EEEEECSSSSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 411
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=46.57 E-value=15 Score=42.69 Aligned_cols=33 Identities=21% Similarity=0.103 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEECCCCCchHHHHHHH
Q psy3462 21 KYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCS 59 (795)
Q Consensus 21 p~~~Q~~mm~~i~~al~~~~~~llEAPTGTGKTLAyL~p 59 (795)
+-+.|++.+. ..+.+++|.|+.|||||-...-=
T Consensus 12 Ln~~Q~~av~------~~~g~~lV~AgAGSGKT~vL~~r 44 (724)
T 1pjr_A 12 LNKEQQEAVR------TTEGPLLIMAGAGSGKTRVLTHR 44 (724)
T ss_dssp SCHHHHHHHH------CCSSCEEEEECTTSCHHHHHHHH
T ss_pred CCHHHHHHHh------CCCCCEEEEEcCCCCHHHHHHHH
Confidence 5678854433 23578999999999999654433
No 412
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=46.50 E-value=15 Score=37.33 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=14.1
Q ss_pred CcEEEeCCCCCChhHHH
Q psy3462 292 KNCLLESPTGSGKTLAL 308 (795)
Q Consensus 292 ~~~l~EaPTGTGKTlay 308 (795)
.+.++-||.|||||...
T Consensus 59 n~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SEEEEESCGGGCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999643
No 413
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=46.47 E-value=11 Score=36.23 Aligned_cols=23 Identities=13% Similarity=-0.034 Sum_probs=18.5
Q ss_pred ccccCcEEEeCCCCCChhHHHHH
Q psy3462 288 CNKAKNCLLESPTGSGKTLALLC 310 (795)
Q Consensus 288 l~~~~~~l~EaPTGTGKTlayL~ 310 (795)
+..+.+.++-||+|+|||.-.+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHH
Confidence 55678999999999999964433
No 414
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=46.46 E-value=7.3 Score=35.67 Aligned_cols=15 Identities=40% Similarity=0.346 Sum_probs=13.0
Q ss_pred CcEEEeCCCCCChhH
Q psy3462 292 KNCLLESPTGSGKTL 306 (795)
Q Consensus 292 ~~~l~EaPTGTGKTl 306 (795)
.++++.||.|+|||-
T Consensus 3 ~~I~i~G~~GsGKST 17 (181)
T 1ly1_A 3 KIILTIGCPGSGKST 17 (181)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred eEEEEecCCCCCHHH
Confidence 468999999999984
No 415
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=46.44 E-value=6 Score=38.71 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=11.3
Q ss_pred HhcCCcEEEECCCCCchH
Q psy3462 36 CNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 36 l~~~~~~llEAPTGTGKT 53 (795)
+..+..+.|.+|+|+|||
T Consensus 24 v~~G~ii~l~Gp~GsGKS 41 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKT 41 (231)
T ss_dssp EECCCEEEEECSCC----
T ss_pred cCCCCEEEEECCCCCCHH
Confidence 345677999999999999
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=46.41 E-value=9.7 Score=36.73 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.2
Q ss_pred cccCcEEEeCCCCCChhH
Q psy3462 289 NKAKNCLLESPTGSGKTL 306 (795)
Q Consensus 289 ~~~~~~l~EaPTGTGKTl 306 (795)
..+.+++++|+.|+|||-
T Consensus 23 ~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKST 40 (211)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 456789999999999984
No 417
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.38 E-value=7.6 Score=43.47 Aligned_cols=15 Identities=47% Similarity=0.731 Sum_probs=13.4
Q ss_pred CcEEEECCCCCchHH
Q psy3462 40 KNCLLESPTGSGKTL 54 (795)
Q Consensus 40 ~~~llEAPTGTGKTL 54 (795)
+.+++.+|.|||||+
T Consensus 217 rGvLLyGPPGTGKTl 231 (437)
T 4b4t_I 217 KGVILYGAPGTGKTL 231 (437)
T ss_dssp SEEEEESSTTTTHHH
T ss_pred CCCceECCCCchHHH
Confidence 459999999999994
No 418
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=46.18 E-value=7.6 Score=37.63 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=13.8
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
...++++||.|+|||-
T Consensus 5 ~~~I~l~G~~GsGKsT 20 (222)
T 1zak_A 5 PLKVMISGAPASGKGT 20 (222)
T ss_dssp SCCEEEEESTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578999999999984
No 419
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=46.11 E-value=7.6 Score=37.48 Aligned_cols=16 Identities=31% Similarity=0.735 Sum_probs=13.6
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
++.++|-||+|+|||-
T Consensus 4 g~~i~lvGpsGaGKST 19 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKST 19 (198)
T ss_dssp -CCEEEECCTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 5778999999999984
No 420
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=45.64 E-value=6.5 Score=36.36 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=12.4
Q ss_pred cEEEeCCCCCChhH
Q psy3462 293 NCLLESPTGSGKTL 306 (795)
Q Consensus 293 ~~l~EaPTGTGKTl 306 (795)
.++++||.|+|||-
T Consensus 3 ~I~i~G~~GsGKsT 16 (194)
T 1nks_A 3 IGIVTGIPGVGKST 16 (194)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999984
No 421
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=45.56 E-value=7.4 Score=41.87 Aligned_cols=17 Identities=47% Similarity=0.634 Sum_probs=15.1
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.++++++-||||+|||-
T Consensus 135 ~g~~i~ivG~~GsGKTT 151 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKST 151 (372)
T ss_dssp SSEEEEEECSSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46789999999999985
No 422
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=45.53 E-value=7.6 Score=39.77 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=14.8
Q ss_pred cCcEEEeCCCCCChhHH
Q psy3462 291 AKNCLLESPTGSGKTLA 307 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTla 307 (795)
+.+++|.||+|||||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56899999999999963
No 423
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=45.43 E-value=8.8 Score=35.41 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=13.8
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+.++++-||.|+|||-
T Consensus 3 ~~~i~l~G~~GsGKST 18 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSG 18 (178)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4578999999999984
No 424
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=45.42 E-value=7.9 Score=37.16 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.3
Q ss_pred HhcCCcEEEECCCCCchH
Q psy3462 36 CNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 36 l~~~~~~llEAPTGTGKT 53 (795)
...+..++|.+|+|+|||
T Consensus 9 ~~~~~~i~l~G~sGsGKs 26 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKG 26 (204)
T ss_dssp CCCCCCEEEECCTTSCHH
T ss_pred cccCCEEEEECCCCCCHH
Confidence 345678999999999999
No 425
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=45.37 E-value=7.8 Score=38.18 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=14.8
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.+..+.||||.|+|||-
T Consensus 19 ~g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CCEEEEEECSTTSCHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 46789999999999995
No 426
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=45.34 E-value=6.9 Score=37.13 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=14.7
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.+..++++|+.|+|||-
T Consensus 9 ~~~~I~l~G~~GsGKST 25 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKST 25 (212)
T ss_dssp CSCEEEEEESTTSSHHH
T ss_pred cCCEEEEEcCCCCCHHH
Confidence 45689999999999995
No 427
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=45.13 E-value=11 Score=40.70 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=14.6
Q ss_pred hcCCcEEEECCCCCchH
Q psy3462 37 NKAKNCLLESPTGSGKT 53 (795)
Q Consensus 37 ~~~~~~llEAPTGTGKT 53 (795)
..+..++|-+|||+|||
T Consensus 121 ~~~g~i~I~GptGSGKT 137 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKS 137 (356)
T ss_dssp CSSEEEEEECSTTSCHH
T ss_pred CCCCEEEEECCCCCCHH
Confidence 44568999999999998
No 428
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=45.03 E-value=7.9 Score=41.72 Aligned_cols=14 Identities=43% Similarity=0.529 Sum_probs=12.3
Q ss_pred CcEEEECCCCCchH
Q psy3462 40 KNCLLESPTGSGKT 53 (795)
Q Consensus 40 ~~~llEAPTGTGKT 53 (795)
..++|.||||+|||
T Consensus 4 ~~i~i~GptgsGKt 17 (322)
T 3exa_A 4 KLVAIVGPTAVGKT 17 (322)
T ss_dssp EEEEEECCTTSCHH
T ss_pred cEEEEECCCcCCHH
Confidence 35789999999999
No 429
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=44.90 E-value=11 Score=38.07 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=19.9
Q ss_pred hhccccCcEEEeCCCCCChhHHHHH
Q psy3462 286 QGCNKAKNCLLESPTGSGKTLALLC 310 (795)
Q Consensus 286 ~al~~~~~~l~EaPTGTGKTlayL~ 310 (795)
..+..+.+.+|-||+|+|||.-.+.
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHH
Confidence 3566788999999999999964444
No 430
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=44.87 E-value=5.9 Score=37.01 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=15.8
Q ss_pred HhcCCcEEEECCCCCchH
Q psy3462 36 CNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 36 l~~~~~~llEAPTGTGKT 53 (795)
+..+..++|.+|.|+|||
T Consensus 6 i~~g~~i~l~G~~GsGKS 23 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKS 23 (191)
T ss_dssp CCTTEEEEEEECTTSCHH
T ss_pred CCCCeEEEEECCCCCCHH
Confidence 556778999999999999
No 431
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=44.73 E-value=9.5 Score=36.13 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=12.5
Q ss_pred CcEEEECCCCCchH
Q psy3462 40 KNCLLESPTGSGKT 53 (795)
Q Consensus 40 ~~~llEAPTGTGKT 53 (795)
..++|.+|+|+|||
T Consensus 2 ~ii~l~GpsGaGKs 15 (186)
T 3a00_A 2 RPIVISGPSGTGKS 15 (186)
T ss_dssp CCEEEESSSSSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 45789999999999
No 432
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=44.73 E-value=9.8 Score=35.41 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=14.2
Q ss_pred cCCcEEEECCCCCchH
Q psy3462 38 KAKNCLLESPTGSGKT 53 (795)
Q Consensus 38 ~~~~~llEAPTGTGKT 53 (795)
....+++.+|.|+|||
T Consensus 10 ~~~~i~i~G~~GsGKs 25 (180)
T 3iij_A 10 LLPNILLTGTPGVGKT 25 (180)
T ss_dssp CCCCEEEECSTTSSHH
T ss_pred cCCeEEEEeCCCCCHH
Confidence 3567999999999999
No 433
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=44.66 E-value=17 Score=41.63 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=20.0
Q ss_pred cCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 291 AKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
++++++.|+.|||||..++-=+...+.
T Consensus 15 ~~~~lV~AgaGSGKT~~l~~ri~~ll~ 41 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVITNKIAHLIR 41 (673)
T ss_dssp SSEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHHHH
Confidence 468899999999999876655443333
No 434
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=44.55 E-value=9.4 Score=39.08 Aligned_cols=14 Identities=57% Similarity=0.940 Sum_probs=12.6
Q ss_pred cEEEeCCCCCChhH
Q psy3462 293 NCLLESPTGSGKTL 306 (795)
Q Consensus 293 ~~l~EaPTGTGKTl 306 (795)
.+++.||+|||||.
T Consensus 46 GvlL~Gp~GtGKTt 59 (274)
T 2x8a_A 46 GVLLAGPPGCGKTL 59 (274)
T ss_dssp EEEEESSTTSCHHH
T ss_pred eEEEECCCCCcHHH
Confidence 38999999999995
No 435
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=44.51 E-value=9.5 Score=35.56 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=14.1
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+.+++++||.|+|||-
T Consensus 9 ~~~I~l~G~~GsGKsT 24 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGT 24 (196)
T ss_dssp SCEEEEEECTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 4679999999999995
No 436
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=44.50 E-value=8.9 Score=36.95 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.4
Q ss_pred ccccCcEEEeCCCCCChhH
Q psy3462 288 CNKAKNCLLESPTGSGKTL 306 (795)
Q Consensus 288 l~~~~~~l~EaPTGTGKTl 306 (795)
+..+.++.|-||+|+|||-
T Consensus 17 i~~Gei~~l~GpnGsGKST 35 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKST 35 (207)
T ss_dssp --CCCEEEEECSTTSSHHH
T ss_pred CCCCCEEEEECCCCCCHHH
Confidence 4567899999999999995
No 437
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=44.49 E-value=17 Score=39.10 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCcEEEECCCCCchHHH
Q psy3462 27 ILHLQVIQGCNKAKNCLLESPTGSGKTLA 55 (795)
Q Consensus 27 ~mm~~i~~al~~~~~~llEAPTGTGKTLA 55 (795)
++++.+.+....+..+++.+++|||||+.
T Consensus 148 ~l~~~i~~~a~~~~~vli~Ge~GtGK~~l 176 (387)
T 1ny5_A 148 EILEKIKKISCAECPVLITGESGVGKEVV 176 (387)
T ss_dssp HHHHHHHHHTTCCSCEEEECSTTSSHHHH
T ss_pred HHHHHHHHhcCCCCCeEEecCCCcCHHHH
Confidence 44444444445567799999999999953
No 438
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=44.48 E-value=7.9 Score=41.67 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=14.7
Q ss_pred cCcEEEeCCCCCChhHH
Q psy3462 291 AKNCLLESPTGSGKTLA 307 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTla 307 (795)
++++++-||||+|||--
T Consensus 123 ~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56899999999999853
No 439
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=44.32 E-value=7.9 Score=37.73 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.9
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
...++++||+|+|||-
T Consensus 7 ~~~I~l~G~~GsGKsT 22 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGT 22 (227)
T ss_dssp CCEEEEEECTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4578999999999985
No 440
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=44.07 E-value=17 Score=39.42 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=29.4
Q ss_pred eeeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccC--cEEEeCCCCCChhHHH
Q psy3462 242 VKVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAK--NCLLESPTGSGKTLAL 308 (795)
Q Consensus 242 ~~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~--~~l~EaPTGTGKTlay 308 (795)
..|.|. |.+...|.+..+.+..-+ ++.+..|- .++.-|.||||||...
T Consensus 47 ~~f~FD~Vf~~~~~Q~~Vy~~~~~pl-------------------v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 47 GSFTFDRVFDMSCKQSDIFDFSIKPT-------------------VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp EEEECSEEECTTCCHHHHHHHHTHHH-------------------HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred cEEeeCeEECCCCccHHHHHHHHHHH-------------------HHHHhCCCcceEEEECCCCCCcceEe
Confidence 345555 567778888777542211 22222333 3667899999999765
No 441
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=44.04 E-value=6.6 Score=36.94 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.9
Q ss_pred hcCCcEEEECCCCCchH
Q psy3462 37 NKAKNCLLESPTGSGKT 53 (795)
Q Consensus 37 ~~~~~~llEAPTGTGKT 53 (795)
..++.+.+.+|+|+|||
T Consensus 7 ~~gei~~l~G~nGsGKS 23 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKS 23 (171)
T ss_dssp ESSEEEEEECCTTSCHH
T ss_pred CCCEEEEEECCCCCCHH
Confidence 45677999999999999
No 442
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=44.00 E-value=15 Score=34.77 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.1
Q ss_pred HHhcCCcEEEECCCCCchH
Q psy3462 35 GCNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 35 al~~~~~~llEAPTGTGKT 53 (795)
.+..+..++|.+|+|+|||
T Consensus 19 gi~~G~~~~i~G~~GsGKT 37 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKT 37 (235)
T ss_dssp SEETTCEEEEECSTTSSHH
T ss_pred CCcCCCEEEEEcCCCCCHH
Confidence 3455778999999999999
No 443
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=43.99 E-value=16 Score=37.17 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=12.7
Q ss_pred cEEEECCCCCchHH
Q psy3462 41 NCLLESPTGSGKTL 54 (795)
Q Consensus 41 ~~llEAPTGTGKTL 54 (795)
.+++-+|.|||||.
T Consensus 60 ~ili~GPPGtGKTt 73 (212)
T 1tue_A 60 CLVFCGPANTGKSY 73 (212)
T ss_dssp EEEEESCGGGCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 59999999999993
No 444
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=43.84 E-value=11 Score=35.88 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=18.4
Q ss_pred hccccCcEEEeCCCCCChhHHHH
Q psy3462 287 GCNKAKNCLLESPTGSGKTLALL 309 (795)
Q Consensus 287 al~~~~~~l~EaPTGTGKTlayL 309 (795)
.+..+.+..|-||+|+|||.-+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHH
Confidence 35567899999999999996443
No 445
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=43.82 E-value=14 Score=39.88 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=30.2
Q ss_pred eeeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccC--cEEEeCCCCCChhHHH
Q psy3462 242 VKVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAK--NCLLESPTGSGKTLAL 308 (795)
Q Consensus 242 ~~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~--~~l~EaPTGTGKTlay 308 (795)
..|.|. |.+...|.+..+.+..-+ ++.+.+|. .++.-|.||||||...
T Consensus 72 ~~F~FD~vf~~~~~Q~~Vy~~~~~pl-------------------v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 72 LKFVFDAVFDETSTQSEVFEHTTKPI-------------------LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp EEEECSEEECTTCCHHHHHHTTHHHH-------------------HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred ceEEeceEECCCCChHHHHHHHHHHH-------------------HHHHhCCCceEEEEeCCCCCCceeee
Confidence 455565 677888888777653211 22222333 3677899999999765
No 446
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=43.79 E-value=15 Score=39.86 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=29.9
Q ss_pred eeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccC--cEEEeCCCCCChhHHH
Q psy3462 243 KVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAK--NCLLESPTGSGKTLAL 308 (795)
Q Consensus 243 ~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~--~~l~EaPTGTGKTlay 308 (795)
.|.|. |.+...|.+..+.+..-+ ++.+..|- .++.-|.||||||...
T Consensus 56 ~f~FD~Vf~~~~~Q~~Vy~~~~~pl-------------------v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 56 TYTFDMVFGASTKQIDVYRSVVCPI-------------------LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp EEECSEEECTTCCHHHHHHHHHHHH-------------------HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred EEeceEEEeccCchhHHHHHHHHHh-------------------HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 44555 678888988887764322 11222233 3667899999999765
No 447
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=43.66 E-value=12 Score=36.65 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=21.0
Q ss_pred ccCcEEEeCCCCCChhHHHHHHHHHHH
Q psy3462 290 KAKNCLLESPTGSGKTLALLCSVLAWQ 316 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTlayL~~~l~~~ 316 (795)
.+.+.++-||.|+|||.++|--+..+.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467899999999999988775554443
No 448
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=43.35 E-value=8.7 Score=41.27 Aligned_cols=13 Identities=54% Similarity=0.721 Sum_probs=11.9
Q ss_pred cEEEECCCCCchH
Q psy3462 41 NCLLESPTGSGKT 53 (795)
Q Consensus 41 ~~llEAPTGTGKT 53 (795)
.++|.||||+|||
T Consensus 12 ~i~i~GptgsGKt 24 (316)
T 3foz_A 12 AIFLMGPTASGKT 24 (316)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCccCHH
Confidence 4789999999999
No 449
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=43.25 E-value=9.5 Score=39.07 Aligned_cols=14 Identities=50% Similarity=0.835 Sum_probs=12.6
Q ss_pred CcEEEECCCCCchH
Q psy3462 40 KNCLLESPTGSGKT 53 (795)
Q Consensus 40 ~~~llEAPTGTGKT 53 (795)
..++|.+|.|||||
T Consensus 45 ~GvlL~Gp~GtGKT 58 (274)
T 2x8a_A 45 AGVLLAGPPGCGKT 58 (274)
T ss_dssp SEEEEESSTTSCHH
T ss_pred CeEEEECCCCCcHH
Confidence 34999999999999
No 450
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=43.15 E-value=9.3 Score=35.72 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=11.9
Q ss_pred cEEEECCCCCchH
Q psy3462 41 NCLLESPTGSGKT 53 (795)
Q Consensus 41 ~~llEAPTGTGKT 53 (795)
.++|+|+.|+|||
T Consensus 2 ~I~i~G~~GsGKs 14 (205)
T 2jaq_A 2 KIAIFGTVGAGKS 14 (205)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCccCHH
Confidence 4789999999999
No 451
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=43.06 E-value=11 Score=36.21 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=15.2
Q ss_pred HhcCCcEEEECCCCCchH
Q psy3462 36 CNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 36 l~~~~~~llEAPTGTGKT 53 (795)
+..+...+|.|++|+|||
T Consensus 27 l~~G~l~~i~G~pG~GKT 44 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKT 44 (251)
T ss_dssp EETTCEEEEECCTTSSHH
T ss_pred CCCCeEEEEEeCCCCCHH
Confidence 344667999999999999
No 452
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=42.95 E-value=8.7 Score=35.93 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=14.0
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+..++++||.|+|||-
T Consensus 12 ~~~I~l~G~~GsGKsT 27 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGT 27 (199)
T ss_dssp SCEEEEEECTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 4679999999999984
No 453
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=42.85 E-value=9 Score=38.60 Aligned_cols=14 Identities=50% Similarity=0.729 Sum_probs=12.5
Q ss_pred cEEEeCCCCCChhH
Q psy3462 293 NCLLESPTGSGKTL 306 (795)
Q Consensus 293 ~~l~EaPTGTGKTl 306 (795)
.++|.||+|||||.
T Consensus 75 gvll~Gp~GtGKTt 88 (278)
T 1iy2_A 75 GVLLVGPPGVGKTH 88 (278)
T ss_dssp EEEEECCTTSSHHH
T ss_pred eEEEECCCcChHHH
Confidence 38999999999995
No 454
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=42.79 E-value=9.5 Score=36.92 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.9
Q ss_pred cCCcEEEECCCCCchH
Q psy3462 38 KAKNCLLESPTGSGKT 53 (795)
Q Consensus 38 ~~~~~llEAPTGTGKT 53 (795)
....++|+||.|+|||
T Consensus 4 ~~~~I~l~G~~GsGKs 19 (222)
T 1zak_A 4 DPLKVMISGAPASGKG 19 (222)
T ss_dssp CSCCEEEEESTTSSHH
T ss_pred CCeEEEEECCCCCCHH
Confidence 3457999999999999
No 455
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=42.70 E-value=9.7 Score=34.93 Aligned_cols=16 Identities=38% Similarity=0.713 Sum_probs=13.8
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+.+++|-||.|+|||-
T Consensus 4 ~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 4678999999999984
No 456
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=42.67 E-value=9.8 Score=36.38 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.6
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.+.++++.||.|+|||-
T Consensus 28 ~g~~i~l~G~~GsGKST 44 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTT 44 (200)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 35789999999999984
No 457
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=42.66 E-value=9.3 Score=36.19 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.1
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+..++++|+.|+|||-
T Consensus 9 ~~~I~l~G~~GsGKsT 24 (215)
T 1nn5_A 9 GALIVLEGVDRAGKST 24 (215)
T ss_dssp CCEEEEEESTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 5679999999999994
No 458
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=42.46 E-value=16 Score=41.41 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=18.4
Q ss_pred cCcEEEeCCCCCChhHHHHHHHH
Q psy3462 291 AKNCLLESPTGSGKTLALLCSVL 313 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTlayL~~~l 313 (795)
..|+++-|+||+|||..+-+-++
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999987654433
No 459
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=42.41 E-value=25 Score=39.70 Aligned_cols=14 Identities=50% Similarity=0.729 Sum_probs=12.6
Q ss_pred cEEEECCCCCchHH
Q psy3462 41 NCLLESPTGSGKTL 54 (795)
Q Consensus 41 ~~llEAPTGTGKTL 54 (795)
.++|.+|+|||||+
T Consensus 66 GvLL~GppGtGKTt 79 (499)
T 2dhr_A 66 GVLLVGPPGVGKTH 79 (499)
T ss_dssp EEEEECSSSSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 48999999999993
No 460
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=42.39 E-value=9.2 Score=35.68 Aligned_cols=14 Identities=36% Similarity=0.399 Sum_probs=12.2
Q ss_pred cEEEeCCCCCChhH
Q psy3462 293 NCLLESPTGSGKTL 306 (795)
Q Consensus 293 ~~l~EaPTGTGKTl 306 (795)
.++++||.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (197)
T 2z0h_A 2 FITFEGIDGSGKST 15 (197)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999984
No 461
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=42.37 E-value=8.5 Score=41.36 Aligned_cols=16 Identities=50% Similarity=0.634 Sum_probs=13.5
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
...+++-||||+|||-
T Consensus 10 ~~~i~i~GptgsGKt~ 25 (316)
T 3foz_A 10 PKAIFLMGPTASGKTA 25 (316)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CcEEEEECCCccCHHH
Confidence 3568899999999994
No 462
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=42.36 E-value=11 Score=37.07 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=12.6
Q ss_pred CcEEEECCCCCchH
Q psy3462 40 KNCLLESPTGSGKT 53 (795)
Q Consensus 40 ~~~llEAPTGTGKT 53 (795)
..+||.||+|+|||
T Consensus 2 RpIVi~GPSG~GK~ 15 (186)
T 1ex7_A 2 RPIVISGPSGTGKS 15 (186)
T ss_dssp CCEEEECCTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 45899999999999
No 463
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=42.25 E-value=15 Score=35.33 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.1
Q ss_pred HhcCCcEEEECCCCCchHH
Q psy3462 36 CNKAKNCLLESPTGSGKTL 54 (795)
Q Consensus 36 l~~~~~~llEAPTGTGKTL 54 (795)
+..+..+++.||+|+|||.
T Consensus 20 l~~G~~~~i~G~~GsGKTt 38 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTI 38 (247)
T ss_dssp EETTCEEEEEECTTSSHHH
T ss_pred CCCCcEEEEECCCCCCHHH
Confidence 4557789999999999994
No 464
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=42.22 E-value=11 Score=35.59 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=14.1
Q ss_pred cCCcEEEECCCCCchH
Q psy3462 38 KAKNCLLESPTGSGKT 53 (795)
Q Consensus 38 ~~~~~llEAPTGTGKT 53 (795)
.+..++|++|.|+|||
T Consensus 3 ~~~~I~l~G~~GsGKs 18 (204)
T 2v54_A 3 RGALIVFEGLDKSGKT 18 (204)
T ss_dssp CCCEEEEECCTTSSHH
T ss_pred CCcEEEEEcCCCCCHH
Confidence 3567999999999999
No 465
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=42.17 E-value=7.6 Score=41.11 Aligned_cols=17 Identities=47% Similarity=0.552 Sum_probs=15.1
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.++++++-||||+|||-
T Consensus 170 ~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HTCCEEEEESTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46789999999999995
No 466
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=42.13 E-value=18 Score=40.68 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=19.6
Q ss_pred cCcEEEeCCCCCChhHHHHHHHHHHHH
Q psy3462 291 AKNCLLESPTGSGKTLALLCSVLAWQR 317 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTlayL~~~l~~~~ 317 (795)
++.+++.||.|||||..++-= ++|+.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~r-i~~l~ 47 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHR-IAWLM 47 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHH-HHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHH-HHHHH
Confidence 577999999999999866554 44443
No 467
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=42.13 E-value=16 Score=39.82 Aligned_cols=49 Identities=27% Similarity=0.372 Sum_probs=29.6
Q ss_pred eeeccC--CCCCHHHHHHHHHHHH-HhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHH
Q psy3462 242 VKVEFP--VKAYPSQISMMNQVSN-LFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLAL 308 (795)
Q Consensus 242 ~~~~fp--y~~yp~Q~~mm~~i~~-~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlay 308 (795)
..|.|. |.+...|.+..+.+.. .++. ++++. +..++.-|.||||||...
T Consensus 67 ~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~----------------~l~G~--n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 67 KKFTFDRSFGPESKQCDVYSVVVSPLIEE----------------VLNGY--NCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp EEEECSEEECTTCCHHHHHHHHHHHHHHH----------------HHHTC--CEEEEEECSTTSSHHHHH
T ss_pred eEEeccEEeccccchhHHHHHHHHHHHHH----------------HhCCc--eEEEEeecCCCCCcceec
Confidence 345555 5677789888776532 2221 11111 234677899999999754
No 468
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=42.07 E-value=9.6 Score=35.21 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=14.1
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+.++++.||.|+|||-
T Consensus 8 g~~i~l~G~~GsGKST 23 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSA 23 (175)
T ss_dssp SEEEEEECSTTSCHHH
T ss_pred CcEEEEEcCCCCCHHH
Confidence 5678999999999985
No 469
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=42.00 E-value=10 Score=34.74 Aligned_cols=13 Identities=38% Similarity=0.350 Sum_probs=11.9
Q ss_pred cEEEECCCCCchH
Q psy3462 41 NCLLESPTGSGKT 53 (795)
Q Consensus 41 ~~llEAPTGTGKT 53 (795)
.+++.||.|+|||
T Consensus 4 ~I~i~G~~GsGKS 16 (181)
T 1ly1_A 4 IILTIGCPGSGKS 16 (181)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEecCCCCCHH
Confidence 4789999999999
No 470
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=41.97 E-value=13 Score=40.08 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=29.9
Q ss_pred eeeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhcccc--CcEEEeCCCCCChhHHH
Q psy3462 242 VKVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKA--KNCLLESPTGSGKTLAL 308 (795)
Q Consensus 242 ~~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~--~~~l~EaPTGTGKTlay 308 (795)
..|.|. |.+...|.++.+.+..- +++.+.+| ..++.-|.||||||...
T Consensus 44 ~~F~FD~Vf~~~~tQ~~Vy~~~~~p-------------------lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 44 KSFNFDRVFHGNETTKNVYEEIAAP-------------------IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp CEEECSCEECTTSCHHHHHHHTTHH-------------------HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred eEEECCEEECCCCCHHHHHHHHHHH-------------------HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 345565 56777898877765321 12222223 33667899999999765
No 471
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=41.87 E-value=8.6 Score=38.76 Aligned_cols=14 Identities=50% Similarity=0.449 Sum_probs=12.3
Q ss_pred cEEEeCCCCCChhH
Q psy3462 293 NCLLESPTGSGKTL 306 (795)
Q Consensus 293 ~~l~EaPTGTGKTl 306 (795)
++++-||||||||-
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 57899999999984
No 472
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=41.73 E-value=15 Score=40.36 Aligned_cols=47 Identities=23% Similarity=0.322 Sum_probs=29.7
Q ss_pred eeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCc--EEEeCCCCCChhHHH
Q psy3462 243 KVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKN--CLLESPTGSGKTLAL 308 (795)
Q Consensus 243 ~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~--~l~EaPTGTGKTlay 308 (795)
.|.|. |.+...|.+..+.+..-+ ++.+..|.+ ++.-|.||||||...
T Consensus 66 ~f~FD~Vf~~~~tQ~~Vy~~~~~pl-------------------v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 66 KYQFDAFYGERSTQQDIYAGSVQPI-------------------LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp EEECSEEECTTCCHHHHHHHHTGGG-------------------HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred EEEcceEecCCCCHhHHHHHHHHHH-------------------HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 45555 577888988877643211 222223333 667899999999765
No 473
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=41.72 E-value=13 Score=34.55 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=14.8
Q ss_pred hcCCcEEEECCCCCchH
Q psy3462 37 NKAKNCLLESPTGSGKT 53 (795)
Q Consensus 37 ~~~~~~llEAPTGTGKT 53 (795)
.....++|++|.|+|||
T Consensus 7 ~~~~~I~l~G~~GsGKs 23 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKG 23 (196)
T ss_dssp TTSCEEEEEECTTSSHH
T ss_pred cCCCEEEEECCCCCCHH
Confidence 45568999999999999
No 474
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=41.61 E-value=10 Score=41.90 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=29.4
Q ss_pred eeeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccC--cEEEeCCCCCChhHHH
Q psy3462 242 VKVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAK--NCLLESPTGSGKTLAL 308 (795)
Q Consensus 242 ~~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~--~~l~EaPTGTGKTlay 308 (795)
..|.|. |.|...|.+..+.|...++ .+..|- .++.-|.||||||...
T Consensus 106 ~~F~FD~VF~~~~~Q~~Vf~~v~plv~--------------------~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 106 QIFSFDQVFHPLSSQSDIFEMVSPLIQ--------------------SALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp CEEECSEEECTTCCHHHHHTTTHHHHH--------------------HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred eEEeeCeEcCCCCCHHHHHHHHHHHHH--------------------HHHCCCceEEEEecCCCCCCeeEe
Confidence 345555 6777788777665543332 222333 3667899999999765
No 475
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=41.58 E-value=18 Score=38.87 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=30.1
Q ss_pred eeeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccC--cEEEeCCCCCChhHHH
Q psy3462 242 VKVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAK--NCLLESPTGSGKTLAL 308 (795)
Q Consensus 242 ~~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~--~~l~EaPTGTGKTlay 308 (795)
..|.|. |.+...|.+..+.+..-+ ++.+.+|- .++.-|.||||||...
T Consensus 50 ~~f~FD~Vf~~~~~Q~~vy~~~~~pl-------------------v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 50 RHFGFHVVLAEDAGQEAVYQACVQPL-------------------LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp EEEECSEEECTTCCHHHHHHHHTHHH-------------------HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred ceEEEEEEEecCcchhHHHHHHHHHH-------------------HHHHHhhcCeeEEEecccCCCceEee
Confidence 345555 677888988877753211 22222233 3677899999999765
No 476
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=41.43 E-value=9.8 Score=35.48 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.4
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.+..++++|+.|+|||-
T Consensus 4 ~g~~i~l~G~~GsGKST 20 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTT 20 (179)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 35678899999999985
No 477
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=41.42 E-value=17 Score=39.78 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=29.8
Q ss_pred eeeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhcccc--CcEEEeCCCCCChhHHH
Q psy3462 242 VKVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKA--KNCLLESPTGSGKTLAL 308 (795)
Q Consensus 242 ~~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~--~~~l~EaPTGTGKTlay 308 (795)
..|.|. |.+...|.+..+.+..-| ++.+..| ..++.-|.||||||...
T Consensus 68 ~~F~FD~Vf~~~~~Q~~Vy~~~~~pl-------------------v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 68 KTFTFDAVYDWNAKQFELYDETFRPL-------------------VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp EEEECSEEECTTCCHHHHHHHTHHHH-------------------HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred eEEEcCeEeCCcCchHHHHHHHHHHH-------------------HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 345555 577888988877753222 1122223 33667899999999764
No 478
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=41.33 E-value=9.9 Score=42.92 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.2
Q ss_pred ccCcEEEeCCCCCChhHH
Q psy3462 290 KAKNCLLESPTGSGKTLA 307 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTla 307 (795)
.+.++++-||||+|||-.
T Consensus 259 ~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTT 276 (511)
T ss_dssp TTCCEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999953
No 479
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=41.18 E-value=8.3 Score=41.49 Aligned_cols=18 Identities=44% Similarity=0.604 Sum_probs=15.6
Q ss_pred HhcCCcEEEECCCCCchH
Q psy3462 36 CNKAKNCLLESPTGSGKT 53 (795)
Q Consensus 36 l~~~~~~llEAPTGTGKT 53 (795)
+..+..++|.+|||+|||
T Consensus 133 ~~~g~~i~ivG~~GsGKT 150 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKS 150 (372)
T ss_dssp TSSSEEEEEECSSSSSHH
T ss_pred hcCCCEEEEECCCCCCHH
Confidence 456778999999999998
No 480
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=41.15 E-value=9.8 Score=38.06 Aligned_cols=16 Identities=25% Similarity=0.354 Sum_probs=13.9
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
...+++||+.|+|||-
T Consensus 24 ~~~I~ieG~~GsGKST 39 (263)
T 1p5z_B 24 IKKISIEGNIAAGKST 39 (263)
T ss_dssp CEEEEEECSTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4578999999999994
No 481
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=41.11 E-value=17 Score=36.91 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=18.5
Q ss_pred ccccCcEEEeCCCCCChhHHHHH
Q psy3462 288 CNKAKNCLLESPTGSGKTLALLC 310 (795)
Q Consensus 288 l~~~~~~l~EaPTGTGKTlayL~ 310 (795)
+..+..++|-||+|+|||.-.++
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 45688999999999999964444
No 482
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=41.06 E-value=9.9 Score=37.01 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.6
Q ss_pred cCCcEEEECCCCCchH
Q psy3462 38 KAKNCLLESPTGSGKT 53 (795)
Q Consensus 38 ~~~~~llEAPTGTGKT 53 (795)
....++|+||+|+|||
T Consensus 6 ~~~~I~l~G~~GsGKs 21 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKG 21 (227)
T ss_dssp -CCEEEEEECTTSSHH
T ss_pred cCcEEEEECCCCCCHH
Confidence 3467999999999999
No 483
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=40.99 E-value=19 Score=37.54 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=19.5
Q ss_pred hhccccCcEEEeCCCCCChhHHHH
Q psy3462 286 QGCNKAKNCLLESPTGSGKTLALL 309 (795)
Q Consensus 286 ~al~~~~~~l~EaPTGTGKTlayL 309 (795)
-.+..+...++.|++|+|||.-.+
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l 86 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFAL 86 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHH
Confidence 457778899999999999995333
No 484
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=40.98 E-value=9.6 Score=35.19 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=12.0
Q ss_pred cEEEECCCCCchH
Q psy3462 41 NCLLESPTGSGKT 53 (795)
Q Consensus 41 ~~llEAPTGTGKT 53 (795)
.++|+||.|+|||
T Consensus 3 ~I~i~G~~GsGKs 15 (194)
T 1nks_A 3 IGIVTGIPGVGKS 15 (194)
T ss_dssp EEEEEECTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 485
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=40.96 E-value=11 Score=42.22 Aligned_cols=16 Identities=56% Similarity=0.748 Sum_probs=14.2
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
.+++++.||+|||||.
T Consensus 50 ~~~iLl~GppGtGKT~ 65 (444)
T 1g41_A 50 PKNILMIGPTGVGKTE 65 (444)
T ss_dssp CCCEEEECCTTSSHHH
T ss_pred CceEEEEcCCCCCHHH
Confidence 4679999999999995
No 486
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=40.87 E-value=15 Score=38.53 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhccccCcEEEeCCCCCChhHHH
Q psy3462 253 SQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLAL 308 (795)
Q Consensus 253 ~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~~~~l~EaPTGTGKTlay 308 (795)
+|.+.+..+.+.+..+ +..+.++.||.|||||-..
T Consensus 1 g~~~~~~~L~~~i~~~---------------------~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS---------------------EGISILINGEDLSYPREVS 35 (305)
T ss_dssp ---CHHHHHHHHHHTC---------------------SSEEEEEECSSSSHHHHHH
T ss_pred ChHHHHHHHHHHHHCC---------------------CCcEEEEECCCCCCHHHHH
Confidence 4667777887777653 1346899999999997543
No 487
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=40.83 E-value=10 Score=35.55 Aligned_cols=17 Identities=41% Similarity=0.405 Sum_probs=14.6
Q ss_pred ccCcEEEeCCCCCChhH
Q psy3462 290 KAKNCLLESPTGSGKTL 306 (795)
Q Consensus 290 ~~~~~l~EaPTGTGKTl 306 (795)
.+.+++++|+.|+|||-
T Consensus 12 ~~~~i~l~G~~GsGKsT 28 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTT 28 (186)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 45678999999999985
No 488
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=40.78 E-value=11 Score=37.09 Aligned_cols=15 Identities=27% Similarity=0.736 Sum_probs=12.9
Q ss_pred CcEEEeCCCCCChhH
Q psy3462 292 KNCLLESPTGSGKTL 306 (795)
Q Consensus 292 ~~~l~EaPTGTGKTl 306 (795)
+.++|-||+|+|||-
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 468999999999984
No 489
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=40.78 E-value=6.2 Score=38.10 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=19.0
Q ss_pred HHHHHHHHHHh----cCCcEEEECCCCCchH
Q psy3462 27 ILHLQVIQGCN----KAKNCLLESPTGSGKT 53 (795)
Q Consensus 27 ~mm~~i~~al~----~~~~~llEAPTGTGKT 53 (795)
++++++.+.+. .+..+.|.+|+|+|||
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKS 36 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKS 36 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHH
Confidence 34555555543 3456889999999998
No 490
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=40.25 E-value=11 Score=35.14 Aligned_cols=12 Identities=42% Similarity=0.587 Sum_probs=11.4
Q ss_pred EEEECCCCCchH
Q psy3462 42 CLLESPTGSGKT 53 (795)
Q Consensus 42 ~llEAPTGTGKT 53 (795)
++|+||.|+|||
T Consensus 3 I~l~G~~GsGKs 14 (197)
T 2z0h_A 3 ITFEGIDGSGKS 14 (197)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 789999999999
No 491
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=40.23 E-value=15 Score=39.65 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=29.9
Q ss_pred eeeccC--CCCCHHHHHHHHHHHHHhcCCccccccchhhhhHHHHHhhcccc--CcEEEeCCCCCChhHHH
Q psy3462 242 VKVEFP--VKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKA--KNCLLESPTGSGKTLAL 308 (795)
Q Consensus 242 ~~~~fp--y~~yp~Q~~mm~~i~~~l~~~~~~~~~~~~~~~~~~~i~al~~~--~~~l~EaPTGTGKTlay 308 (795)
..|.|. |.+...|.+..+.+..-+ ++.+.+| ..++.-|.||||||...
T Consensus 56 ~~f~FD~Vf~~~~~Q~~Vy~~~~~pl-------------------v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 56 RTFTFDAVYDQTSCNYGIFQASFKPL-------------------IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp EEEECSEEECTTCCHHHHHHHTTHHH-------------------HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred eEeeCCEEECCCcchhHHHHHHHHHH-------------------HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 455565 678888988777642211 1122223 34677899999999765
No 492
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=40.21 E-value=19 Score=34.61 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=18.4
Q ss_pred cCcEEEeCCCCCChhHHHHHHHHH
Q psy3462 291 AKNCLLESPTGSGKTLALLCSVLA 314 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTlayL~~~l~ 314 (795)
+.+.++-||.|+|||..++=-+..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999876544333
No 493
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=40.18 E-value=11 Score=36.34 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.8
Q ss_pred cCcEEEeCCCCCChhH
Q psy3462 291 AKNCLLESPTGSGKTL 306 (795)
Q Consensus 291 ~~~~l~EaPTGTGKTl 306 (795)
+..++++||.|+|||-
T Consensus 4 ~~~I~l~G~~GsGKsT 19 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGT 19 (220)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4578999999999984
No 494
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=40.04 E-value=12 Score=36.73 Aligned_cols=15 Identities=47% Similarity=0.620 Sum_probs=13.1
Q ss_pred CCcEEEECCCCCchH
Q psy3462 39 AKNCLLESPTGSGKT 53 (795)
Q Consensus 39 ~~~~llEAPTGTGKT 53 (795)
+..+.|++|.|+|||
T Consensus 20 g~~i~i~G~~GsGKS 34 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKT 34 (230)
T ss_dssp CEEEEEECSTTSCHH
T ss_pred ceEEEEECCCCCCHH
Confidence 445899999999999
No 495
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=39.99 E-value=17 Score=33.73 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=16.7
Q ss_pred cEEEECCCCCchHHHHHHHHHHHHH
Q psy3462 41 NCLLESPTGSGKTLALLCSVLAWQR 65 (795)
Q Consensus 41 ~~llEAPTGTGKTLAyL~paL~~~~ 65 (795)
..+|.+|+|+|||- |+=|+.|+.
T Consensus 25 ~~~I~G~NGsGKSt--il~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSS--LLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHH--HHHHHHHHH
T ss_pred eEEEECCCCCCHHH--HHHHHHHHH
Confidence 57899999999993 345555543
No 496
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=39.89 E-value=11 Score=38.04 Aligned_cols=13 Identities=54% Similarity=0.585 Sum_probs=11.7
Q ss_pred cEEEECCCCCchH
Q psy3462 41 NCLLESPTGSGKT 53 (795)
Q Consensus 41 ~~llEAPTGTGKT 53 (795)
.++|-+|||||||
T Consensus 3 li~I~G~~GSGKS 15 (253)
T 2ze6_A 3 LHLIYGPTCSGKT 15 (253)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCcCHH
Confidence 4789999999999
No 497
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=39.67 E-value=9.1 Score=35.56 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=13.3
Q ss_pred CCcEEEECCCCCchH
Q psy3462 39 AKNCLLESPTGSGKT 53 (795)
Q Consensus 39 ~~~~llEAPTGTGKT 53 (795)
+..+++++|.|+|||
T Consensus 4 g~~I~l~G~~GsGKS 18 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKG 18 (186)
T ss_dssp EEEEEEECCTTSCHH
T ss_pred CeEEEEECCCCCCHH
Confidence 456899999999999
No 498
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=39.33 E-value=13 Score=34.03 Aligned_cols=15 Identities=40% Similarity=0.789 Sum_probs=13.4
Q ss_pred CCcEEEECCCCCchH
Q psy3462 39 AKNCLLESPTGSGKT 53 (795)
Q Consensus 39 ~~~~llEAPTGTGKT 53 (795)
+..++|.+|.|+|||
T Consensus 4 ~~~i~l~G~~GsGKS 18 (173)
T 1kag_A 4 KRNIFLVGPMGAGKS 18 (173)
T ss_dssp CCCEEEECCTTSCHH
T ss_pred CCeEEEECCCCCCHH
Confidence 457899999999998
No 499
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=39.31 E-value=16 Score=36.52 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=13.2
Q ss_pred CCcEEEECCCCCchH
Q psy3462 39 AKNCLLESPTGSGKT 53 (795)
Q Consensus 39 ~~~~llEAPTGTGKT 53 (795)
...++|.||.|+|||
T Consensus 29 ~~~I~l~G~~GsGKs 43 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKG 43 (243)
T ss_dssp CEEEEEECCTTSSHH
T ss_pred CcEEEEECCCCCCHH
Confidence 346999999999998
No 500
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=39.30 E-value=12 Score=35.52 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=16.4
Q ss_pred HHhcCCcEEEECCCCCchHH
Q psy3462 35 GCNKAKNCLLESPTGSGKTL 54 (795)
Q Consensus 35 al~~~~~~llEAPTGTGKTL 54 (795)
.+..+..++|.+|+|+|||.
T Consensus 16 gi~~G~~~~i~G~~GsGKTt 35 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTT 35 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHH
T ss_pred CCcCCEEEEEECCCCCCHHH
Confidence 34557789999999999993
Done!