RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3462
(795 letters)
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 115 bits (288), Expect = 2e-30
Identities = 6/74 (8%), Positives = 11/74 (14%)
Query: 109 MVKKPATKKKPLNEVVTRDYTIHMHKRLHKVGFKKRAPRAIKVVRAFVKKQMGTEDVRID 168
M + Y + A K +
Sbjct: 1 MAPTSKMALGIKRASRSHTYHRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRT 60
Query: 169 TRLNKHIWSKGINN 182
K +K +
Sbjct: 61 VSTRKPHPTKLRST 74
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 111 bits (278), Expect = 4e-29
Identities = 8/63 (12%), Positives = 16/63 (25%)
Query: 120 LNEVVTRDYTIHMHKRLHKVGFKKRAPRAIKVVRAFVKKQMGTEDVRIDTRLNKHIWSKG 179
+ + Y+ + K K + K + T R+ R
Sbjct: 4 QKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQ 63
Query: 180 INN 182
I +
Sbjct: 64 IIS 66
>2zkr_x 60S ribosomal protein L31; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 125
Score = 110 bits (277), Expect = 7e-29
Identities = 50/75 (66%), Positives = 60/75 (80%), Gaps = 3/75 (4%)
Query: 111 KKPATKKK---PLNEVVTRDYTIHMHKRLHKVGFKKRAPRAIKVVRAFVKKQMGTEDVRI 167
KK KKK +NEVVTR+YTI++HKR+H VGFKKRAPRA+K +R F K+MGT DVRI
Sbjct: 5 KKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRI 64
Query: 168 DTRLNKHIWSKGINN 182
DTRLNK +W+KGI N
Sbjct: 65 DTRLNKAVWAKGIRN 79
>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_W 4a1c_W 4a1e_W
Length = 111
Score = 107 bits (270), Expect = 5e-28
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 121 NEVVTRDYTIHMHKRLHKVGFKKRAPRAIKVVRAFVKKQMGTEDVRIDTRLNKHIWSKGI 180
E + D T+++HK+ HK+ FKK+APRAI+ + A KK MGT+DVRIDT LNK IWS GI
Sbjct: 4 QEEKSIDTTVNLHKQCHKISFKKKAPRAIREIVAIAKKTMGTDDVRIDTELNKFIWSNGI 63
Query: 181 NN 182
N
Sbjct: 64 RN 65
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X*
1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X*
1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X*
1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Length = 92
Score = 105 bits (265), Expect = 1e-27
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 120 LNEVVTRDYTIHMHKRLHKVGFKKRAPRAIKVVRAFVKKQMGTED--VRIDTRLNKHIWS 177
++ R TI + KRA +A+ ++R + K ++ VR+D +N+ W+
Sbjct: 3 ASDFEERVVTIPLRD-ARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWA 61
Query: 178 KGINN 182
+G N
Sbjct: 62 RGRAN 66
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer
aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
acidocaldarius} PDB: 3crw_1*
Length = 551
Score = 85.5 bits (211), Expect = 2e-17
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 612 GLLKGGDWYQIQAYRALNQALGRCIRHRYDWGAILLVDQRFYSKNSQQGLSKWVRNQVQ 670
++I A + QA+GR IR D + L+D+RF S ++ L N+++
Sbjct: 492 NRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRFESLYWKKNLKCLNANKMK 550
Score = 42.7 bits (100), Expect = 4e-04
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 284 VIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELVQQK-MFEQRTQDLQKIPFRK 342
VI+G L +PTGSGKTL L L + K +V+ F +DL KI ++
Sbjct: 15 VIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKR 74
Query: 343 -LKISRLKAKD 352
+ S L K
Sbjct: 75 NITFSFLVGKP 85
Score = 39.6 bits (92), Expect = 0.004
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 32 VIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELVQQK-MFEQRTQDLQKTSFVF 90
VI+G L +PTGSGKTL L L + K +V+ F +DL K
Sbjct: 15 VIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKR 74
Query: 91 CGR 93
Sbjct: 75 NIT 77
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Length = 540
Score = 79.6 bits (196), Expect = 1e-15
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 615 KGGDWYQIQAYRALNQALGRCIRHRYDWGAILLVDQRFYSKNSQQGLSKW 664
+ Q +GR R D+ I L D R+ + G+S+
Sbjct: 485 DEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSRYREYFADLGISEK 534
Score = 42.7 bits (100), Expect = 5e-04
Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 25/107 (23%)
Query: 246 FPVKAYPSQISMMNQVSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKT 305
++ Q + + I K LL + G GKT
Sbjct: 4 LKLQLRQWQAEKLGEA-----------------------INALKHGKTLLLNAKPGLGKT 40
Query: 306 LALLCSVLAWQRKEKELVQQKMFEQRTQDLQKIPFRKLKISRLKAKD 352
+ + L Q K+K L+ + Q + LK L K
Sbjct: 41 VFVEV--LGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLIGKS 85
Score = 37.3 bits (86), Expect = 0.022
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 32 VIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELV----QQKMFEQRTQDLQKTS 87
I K LL + G GKT+ + + ++K Q + + L +
Sbjct: 19 AINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKT 78
Query: 88 FVFCGRSDFFLLFRERRISDTMV 110
G+S + + D +
Sbjct: 79 GFLIGKSASCIYAQGDEEPDEIN 101
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
nucleotide excision repair,; 2.20A {Thermoplasma
acidophilum} PDB: 2vsf_A*
Length = 620
Score = 71.7 bits (176), Expect = 4e-13
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 10/74 (13%)
Query: 618 DWYQIQAYRALNQALGRCIRHRYDWGAILLVDQRFYSKNSQQGLSKWVRNQVQNTSSHNT 677
+ Q +GR IR D GA +++D+R + + +
Sbjct: 551 YSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRAGQFRKF--IPDMKKT--------SD 600
Query: 678 FMENLRNFVRRRME 691
++ NF
Sbjct: 601 PASDIYNFFISAQA 614
Score = 43.9 bits (104), Expect = 2e-04
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 284 VIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELV-----QQKMFEQRTQDLQKI 338
+ K+ LESPTGSGKT+ L S L + + K V EQ ++L+ +
Sbjct: 15 LRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSL 74
Query: 339 PFR-KLKISRLKAKD 352
K++ ++ +
Sbjct: 75 SSTMKIRAIPMQGRV 89
Score = 40.5 bits (95), Expect = 0.002
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 32 VIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELVQQKMFEQRTQDLQK 85
+ K+ LESPTGSGKT+ L S L + + K V ++ RT ++
Sbjct: 15 LRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKV---LYLVRTNSQEE 65
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.7 bits (172), Expect = 1e-12
Identities = 85/598 (14%), Positives = 173/598 (28%), Gaps = 188/598 (31%)
Query: 2 TKKSSDIFKTYL-------NEPNYFLKYSSCKILHLQVIQGC----NKAKNCLLESPTGS 50
++ S + + Y+ N+ F KY+ ++ ++ AKN L++ GS
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 51 GKTLALLCSVLAWQRKEKELVQQKMFEQRTQDLQKTSFVF------CGRSDFF------L 98
GK + +A VQ KM + +F C + L
Sbjct: 162 GK------TWVALDVCLSYKVQCKMDFK----------IFWLNLKNCNSPETVLEMLQKL 205
Query: 99 LFRERRISDTMVKKPATKKKPLNEVVTRDYTIHMHKRLHKVGFKKRAPRAIKVVRAFVKK 158
L++ + + K ++ + +RL K K + V+
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAEL------RRLLK---SKPYENCLLVLL----- 251
Query: 159 QMGTEDVRIDTRLNKHIWSKGINNHTLGTAYFDSAAKCHKEMRYRNRVVKLTGFDQLIGE 218
+V+ N W+ F+ C +++ LT +
Sbjct: 252 -----NVQ-----NAKAWN-----------AFN--LSC--------KIL-LTTRFK---- 275
Query: 219 SAVLPSVKDKLKPSAATSYTIGGVKVEFPVKAYPSQISMMNQVSNLFEQPNH---FLKYS 275
V D L + T + ++ S LKY
Sbjct: 276 -----QVTDFLSAATTTHIS-------------------LDHHSMTLTPDEVKSLLLKYL 311
Query: 276 SCKILHL--QVIQGCNKAKNCLLESPTGSGKTLALLCSVLA---------WQR------- 317
C+ L +V+ +P S++A W
Sbjct: 312 DCRPQDLPREVLTT----------NP--------RRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 318 KEKELVQQKMFEQRTQDLQKIPFRKLKISRLKAKDFSTNNGMEQQLLTCITTINQQEDEL 377
K +++ + + +K+ F +L + F + + LL + + + ++
Sbjct: 354 KLTTIIESSLNVLEPAEYRKM-FDRLSV-------FPPSAHIPTILL-SLIWFDVIKSDV 404
Query: 378 RQSTKKTRVDKLKVLNGRSKNLVSSI-DFILGLLYKGI------QTCITTINQQEDELRQ 430
K K ++ + K SI L L K ++ + N +
Sbjct: 405 MVVVNKLH--KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 431 STKKTKVDK---------LKVL-NGRSKNLVSSIDFILGLLYKGVNCEDYHVCMESSVAF 480
+D+ LK + + L + L + + + S+
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL- 521
Query: 481 DQLIQLDLMLD---EHLNPYVLKVKDTPCIED-LEQFSTRALVSPCFQLIQLDLMLDE 534
+ L QL ++ Y V I D L + + S L+++ LM ++
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNA---ILDFLPKIEENLICSKYTDLLRIALMAED 576
Score = 59.5 bits (143), Expect = 3e-09
Identities = 84/584 (14%), Positives = 158/584 (27%), Gaps = 180/584 (30%)
Query: 352 DFSTNNGMEQQLLTC--ITTINQQ-----------EDELRQSTKKTRVDKLKVLNGRSKN 398
DF T E Q I ++ + +D + K +D ++ SK+
Sbjct: 8 DFETG---EHQY-QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID--HIIM--SKD 59
Query: 399 LVSSIDFILGLL-------------------YKGIQTCITTINQQE-------------- 425
VS + L YK + + I T +Q
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 426 ------------------DELRQSTKKTKVDKLKVLNG--------------RSKNLVSS 453
+LRQ+ + + K +++G S +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 454 IDFILGLLYKGV-NCEDYHVCMESSVAFDQLIQLDLMLDEHLNPYVLKVKDTPC-IEDLE 511
+DF + + + NC +E L +L +D + + I ++
Sbjct: 180 MDF--KIFWLNLKNCNSPETVLE------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 512 QFSTRALVSPCFQ--LIQLDLMLDEHLNPYVLKVKDTPC-IEDLVLKRNIFYDTLMLCDV 568
R L S ++ L L+L N + C I L+ R + +
Sbjct: 232 AELRRLLKSKPYENCL----LVLLNVQNAKAWNAFNLSCKI--LLTTR----FKQVTDFL 281
Query: 569 QTKETKHRDSVKQVMG---KGNLELCKGVFWTRF----PNTCQYSVVYPTGL------LK 615
T H M L R + P L ++
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIR 338
Query: 616 GG----DWYQIQAYRALNQALGRCI--------RHRYDWGAILLVDQRFYSKNSQQGLSK 663
G D ++ L + + R +D ++ + LS
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS----AHIPTILLSL 394
Query: 664 -W---VRNQVQN--TSSHNTFM--ENLRNFVRRRMEIQLEEERVKREEANLNEE------ 709
W +++ V H + + + I LE + E L+
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 710 -EEVMDDTDRASSSQES----------TGGTQSQNSTVMPQ-----RWAYLSLLKKLSPL 753
+ D D + + T+ R+ L +K+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF----LEQKIRHD 510
Query: 754 APTWGPPLKIQS-VPQVIFHKP--CDNKSIF--KLISIKYMLIR 792
+ W I + + Q+ F+KP CDN + + +I L +
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 7e-07
Identities = 91/516 (17%), Positives = 143/516 (27%), Gaps = 218/516 (42%)
Query: 7 DIFKTYLNEPN-----------------YFLKYSSCKILHLQVIQGCNKAKNCL--LESP 47
+ F L EP FL Y S + +V Q CL E+
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 48 TGSGK---TLA--LLCSVLAWQRKEKELVQQ----KMFEQRTQDLQKTSFVF----CGRS 94
G LA LL K KEL++ ++ +R D + S +F G +
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 95 DFFLLF----------RE-RRISDTMVKKPATKKKPLNEVVTRDYTIHMHKRLHKVGFKK 143
+F E R + T L D + L
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTY--------HVL----VGDLIKFSAETL------- 195
Query: 144 RAPRAIKVVRAFVKKQMGTEDVRIDTRLNKHIWSKGIN--------NHTLGTAYFDSAA- 194
+E +R K +++G+N ++T Y S
Sbjct: 196 ------------------SELIRTTLDAEKV-FTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 195 ---------------------KCHKEMRYRNRVVKLTGFDQ-LIGESAVLPSVKDKLKPS 232
E+R + + TG Q L+ +AV + D S
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELR--SYLKGATGHSQGLV--TAVAIAETD----S 288
Query: 233 AATSYTIG----------GVKV--EFPVKAYPSQI------------SMM--------NQ 260
+ + GV+ +P + P I S M Q
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 261 VSNLFEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLESPTGSGKTLALLCSVLAWQRKEK 320
V + + N L K + + ++ N AKN ++ +G ++L L L RK K
Sbjct: 349 VQDYVNKTNSHLPAG--KQVEISLV---NGAKNLVV---SGPPQSLYGLNLTL---RKAK 397
Query: 321 ELVQQKMFEQRTQDLQKIPF--RKLKIS-------------------------------R 347
D +IPF RKLK S
Sbjct: 398 A--------PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 348 LKAKD-----FSTNNGMEQQ---------LLTCITT 369
AKD + T +G + + ++ CI
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Score = 46.6 bits (110), Expect = 3e-05
Identities = 63/351 (17%), Positives = 106/351 (30%), Gaps = 139/351 (39%)
Query: 72 QQK-MFEQRTQDLQKTSFVF---CGRSDFFLLFRER---RISDTMVKKPATKKKPLNEVV 124
Q++ M DL KTS R+D F++ I D ++ P
Sbjct: 1627 QEQGM----GMDLYKTSKAAQDVWNRADNH--FKDTYGFSILDIVINNPVNL-------- 1672
Query: 125 TRDYTIHMHKRLHKVGFKKRAPRAIK------VVRAFVKKQMGTEDV--RIDTRLNKHIW 176
TIH F + I+ + V ++ TE + I+ + +
Sbjct: 1673 ----TIH---------FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 177 S--KGINNHT------LGTAYFDSAAKCHKEMRYRNRVVKLTGFDQL--------IGE-S 219
KG+ + T L A ++++ + G +GE +
Sbjct: 1720 RSEKGLLSATQFTQPALTLM---EKA-AFEDLKSK-------GLIPADATFAGHSLGEYA 1768
Query: 220 AVLPSVKDKLKPSAATSYTIGGVKV-----EFPVKAYP------SQISMM----NQVSNL 264
A L S+ D + + V+V A P S M+ +V+
Sbjct: 1769 A-LASLADVMSIESL-------VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 265 FEQPNHFLKYSSCKILHLQVIQGCNKAKNCLLE-----SPTG----SGKTLAL--LCSVL 313
F Q + L V++ K L+E +G AL + +VL
Sbjct: 1821 FSQ----------EALQ-YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL 1869
Query: 314 AWQRKEKELVQQKMFEQRTQDLQKIPFRKLKISRLKAKDFSTNNGMEQQLL 364
+ K LQKI +L+ S S +E L
Sbjct: 1870 ------NFI---K--------LQKIDIIELQKS------LSLEE-VEGHLF 1896
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 36.3 bits (84), Expect = 0.019
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 30 LQVIQGCNKAKNCLLESPTGSGKTL--ALLCSVLAWQRKE-------------KELVQQK 74
++V Q + KN ++ PTGSGKT + ++K+ LV+Q
Sbjct: 39 MEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQL 98
Query: 75 MFEQRTQDLQKTSFV 89
++ L+K V
Sbjct: 99 FRKEFQPFLKKWYRV 113
Score = 36.3 bits (84), Expect = 0.019
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 15/61 (24%)
Query: 282 LQVIQGCNKAKNCLLESPTGSGKTL--ALLCSVLAWQRKE-------------KELVQQK 326
++V Q + KN ++ PTGSGKT + ++K+ LV+Q
Sbjct: 39 MEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQL 98
Query: 327 M 327
Sbjct: 99 F 99
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
3tii_A* 3tin_A*
Length = 380
Score = 36.5 bits (84), Expect = 0.031
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 522 CFQLIQLDLMLDEHLNPYVLKVKDTPCIE---DLVLKRNIFYDTL 563
FQL D M+D++L ++++V P L + I +
Sbjct: 314 SFQLFGFDFMVDKNLKVWLIEVNGAPACAQKLYAELCKGIVDLAI 358
Score = 28.4 bits (63), Expect = 10.0
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 482 QLIQLDLMLDEHLNPYVLKVKDTPCIEDLEQFSTRALVSPCFQLIQLDLMLD 533
QL D M+D++L ++++V P Q L L + +
Sbjct: 316 QLFGFDFMVDKNLKVWLIEVNGAP---ACAQKLYAELCKGIVDLA-ISSVFP 363
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.057
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 747 LKKL-SPL---APTWGPPLKIQS 765
LKKL + L A P L I++
Sbjct: 22 LKKLQASLKLYADDSAPALAIKA 44
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.083
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 680 ENLRNFVRRRMEIQLEEERVKREEANLNEEEEVMDDTD 717
++L + +R+ E Q+E K + N ++ D
Sbjct: 118 KDLEEWNQRQSE-QVE----KNKINNRIADKAFYQQPD 150
Score = 27.8 bits (61), Expect = 9.6
Identities = 8/76 (10%), Positives = 29/76 (38%), Gaps = 25/76 (32%)
Query: 315 WQRKEKELVQQK----------MFEQRTQDLQKIPF---RKLKISRLKAKDFSTNNGMEQ 361
W+ ++++ +Q+ E+ +DL++ + + ++ + K N ++
Sbjct: 90 WREEQRKRLQELDAASKVMEQEWREKAKKDLEE--WNQRQSEQVEKNKIN----NRIADK 143
Query: 362 QLLTCITTINQQEDEL 377
Q + ++
Sbjct: 144 AFY------QQPDADI 153
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 33.9 bits (78), Expect = 0.23
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 17/82 (20%)
Query: 13 LNEPNYFLK-YSSCKILHLQVIQ------GCNKAKNCLLESPTGSGKT----LALLCSVL 61
L P+ ++ I L Q G + LL SPTGSGKT + ++ +L
Sbjct: 13 LKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLL 72
Query: 62 AWQRKE------KELVQQKMFE 77
K + L +K
Sbjct: 73 KNGGKAIYVTPLRALTNEKYLT 94
Score = 33.2 bits (76), Expect = 0.38
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 10/48 (20%)
Query: 292 KNCLLESPTGSGKT----LALLCSVLAWQRKE------KELVQQKMFE 329
LL SPTGSGKT + ++ +L K + L +K
Sbjct: 47 NRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLT 94
>1z24_A Insecticyanin A form; blue biliprotein, INS-A, chromophore
binding., lipid binding protein; HET: BLV; 2.60A
{Manduca sexta} SCOP: b.60.1.1
Length = 189
Score = 31.7 bits (71), Expect = 0.67
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 617 GDWYQIQAYRALNQALGRCIRHRYD-WGAILLVDQRFYSKNSQQ 659
G W++I N+ G+C Y G V F S ++
Sbjct: 25 GAWHEIAKLPLENENQGKCTIAEYKYDGKKASVYNSFVSNGVKE 68
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 32.4 bits (74), Expect = 0.68
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 47 PTGSGKTLALLCSVLAWQRKEK---------ELVQQ 73
PTG GKT + + L RK K LV+Q
Sbjct: 44 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQ 79
Score = 32.4 bits (74), Expect = 0.68
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 299 PTGSGKTLALLCSVLAWQRKEK---------ELVQQ 325
PTG GKT + + L RK K LV+Q
Sbjct: 44 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQ 79
>2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2,
protein structure initiative; NMR
{Methanothermobacterthermautotrophicus str}
Length = 101
Score = 29.8 bits (67), Expect = 1.1
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 200 MRYRNRVVKLTGFDQLIGESAVLPSVKDKLKPSAATSYTIGGVKVE 245
R K D+LIG V V + + P + G VKV+
Sbjct: 25 ARITGEPSKKAVSDRLIGRKGV---VMEAISPQNS-----GLVKVD 62
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase,
primase, NHEJ, transferase; 1.65A {Mycobacterium
tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Length = 303
Score = 30.9 bits (70), Expect = 1.3
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 607 VVYP-TGLLKGG--DWYQIQAYRALNQALGR-CIRHRYDWGAILLVDQRFYSKNSQQGLS 662
V+YP TG K D+Y A L GR R R+ G F+ K
Sbjct: 20 VLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGV---DQPAFFEKQLALSAP 76
Query: 663 KWVR 666
W+
Sbjct: 77 PWLS 80
>1kt6_A RBP, plasma retinol-binding protein; transport protein; HET: RTL;
1.10A {Bos taurus} SCOP: b.60.1.1 PDB: 1erb_A* 1fem_A*
1fen_A* 1hbp_A* 1fel_A* 1kt4_A* 1kt3_A* 1kt7_A* 1hbq_A
1aqb_A* 1kt5_A* 1rlb_E* 1rbp_A* 1brq_A 1brp_A* 1jyd_A
1jyj_A 2wqa_E* 3bsz_E* 1qab_E* ...
Length = 183
Score = 30.2 bits (67), Expect = 1.6
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 617 GDWYQIQAYRALNQALGRCIRHRY 640
G WY + L I +
Sbjct: 22 GTWYAMAKKDPEGLFLQDNIVAEF 45
>1kxo_A DIGA16; lipocalin, anticalin, genetical engineering, digoxigenin,
ligand binding protein; 1.80A {Pieris brassicae} SCOP:
b.60.1.1 PDB: 1lke_A* 1lnm_A* 1n0s_A* 1t0v_A 1bbp_A*
Length = 184
Score = 30.2 bits (67), Expect = 1.8
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 617 GDWYQIQAYRALNQALGRCIRHRYDWGAILLVDQRFYSKNSQQGLSKWVRNQVQNTSS 674
G W+Q+ AY G+C Y + R+ + ++ S+ V ++
Sbjct: 24 GKWWQVAAYPDHITKYGKCGWAEYTPEGKSVKVSRYSVIHGKEYFSEGTAYPVGDSKI 81
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition
domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus
fulgidus} SCOP: c.37.1.19
Length = 237
Score = 30.4 bits (69), Expect = 2.0
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 38 KAKNCLLESPTGSGKTLALLCSVLAWQRKEKELV 71
K + PTGSGKT + + L+
Sbjct: 107 VDKRGCIVLPTGSGKTHVAMA--AINELSTPTLI 138
Score = 30.4 bits (69), Expect = 2.0
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 290 KAKNCLLESPTGSGKTLALLCSVLAWQRKEKELV 323
K + PTGSGKT + + L+
Sbjct: 107 VDKRGCIVLPTGSGKTHVAMA--AINELSTPTLI 138
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold,
ATP-binding, hydrolase, nucleotide- binding; 2.00A
{Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 31.0 bits (70), Expect = 2.0
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 16/72 (22%)
Query: 22 YSSCKILHLQVIQ------GCNKAKNCLLESPTGSGKT----LALLCSVLAWQRKE---- 67
I Q G + KN L+ PT SGKT +A++ +L K
Sbjct: 16 LKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75
Query: 68 --KELVQQKMFE 77
K L ++K E
Sbjct: 76 PLKALAEEKFQE 87
Score = 31.0 bits (70), Expect = 2.0
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 16/72 (22%)
Query: 274 YSSCKILHLQVIQ------GCNKAKNCLLESPTGSGKT----LALLCSVLAWQRKE---- 319
I Q G + KN L+ PT SGKT +A++ +L K
Sbjct: 16 LKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75
Query: 320 --KELVQQKMFE 329
K L ++K E
Sbjct: 76 PLKALAEEKFQE 87
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix
transcriptional regulator cycle; 2.50A {Homo sapiens}
Length = 360
Score = 30.7 bits (68), Expect = 2.2
Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 363 LLTCITTINQQEDELRQSTKKTRVDKLKVLNGRSKNLVSSIDFILGLLYKGIQTCITTIN 422
+ + + + ++ KK +V +L + S + S+D + +Y + T+
Sbjct: 248 VRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPM--SHLTVR 305
Query: 423 QQEDELRQSTKKTKVDKLKVLNGRSKNLVSSIDFILGLL 461
+L KK ++ K + + S I ++ +
Sbjct: 306 INSAKLVSVLKKA-LEITKASHVTPQPEDSWIPLLINAI 343
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication,
DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 30.5 bits (68), Expect = 2.2
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 38 KAKNCLLESPTGSGKTL--ALLCSVLAWQRKEK--------ELVQQ--KMFEQRTQDLQK 85
K NCL+ PTG GKTL ++ + K LV Q + F + +
Sbjct: 22 KETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81
Query: 86 TSFVFCG 92
G
Sbjct: 82 KIVALTG 88
Score = 30.5 bits (68), Expect = 2.2
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 10/46 (21%)
Query: 290 KAKNCLLESPTGSGKTL--ALLCSVLAWQRKEK--------ELVQQ 325
K NCL+ PTG GKTL ++ + K LV Q
Sbjct: 22 KETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQ 67
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 30.7 bits (68), Expect = 2.4
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 17/97 (17%)
Query: 30 LQVIQGCNKAKNCLLESPTGSGKTLA---LLCSVLAWQRK-----------EKELVQQ-- 73
L++ K KN ++ +PTG GKT + L + + + +Q
Sbjct: 19 LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNK 78
Query: 74 KMFEQRTQDLQKTSFVFCGRSDFFLLFRERRISDTMV 110
+F + + G + + E+ + + +
Sbjct: 79 SVFSKYFERHGYRVTGISG-ATAENVPVEQIVENNDI 114
Score = 29.9 bits (66), Expect = 4.0
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 16/67 (23%)
Query: 282 LQVIQGCNKAKNCLLESPTGSGKTLA---LLCSVLAWQRK-----------EKELVQQ-- 325
L++ K KN ++ +PTG GKT + L + + + +Q
Sbjct: 19 LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNK 78
Query: 326 KMFEQRT 332
+F +
Sbjct: 79 SVFSKYF 85
>3fmz_A Retinol-binding protein 4; disease mutation, secreted, sensory
transduction, transport, vision, vitamin A, transport
protein; HET: 2T1; 2.90A {Homo sapiens}
Length = 212
Score = 29.8 bits (66), Expect = 2.5
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 617 GDWYQIQAYRALNQALGRCIRHRY 640
G WY + L I +
Sbjct: 51 GTWYAMAKKDPEGLFLQDNIVAEF 74
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5,
thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP:
c.1.8.3 PDB: 2man_A* 3man_A*
Length = 302
Score = 30.1 bits (68), Expect = 2.7
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 616 GGDWYQIQAYRALNQALGRCIRHRYDWGAILLVDQRFYSKNSQQGLSKWVRNQVQNTSSH 675
G D + A+ A + +R + L+VD + ++ + + +
Sbjct: 131 GNDSATVAAWATDTSAAIQRLR-AAGFEHTLVVDAPNWGQDWTNTMRNNADQVYASDPTG 189
Query: 676 NT 677
NT
Sbjct: 190 NT 191
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 29.8 bits (67), Expect = 3.9
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 283 QVIQGCNKAKNCLLESPTGSGKTL-ALLCSVLAWQRKEKE--------LVQQKMFEQRTQ 333
+ ++ KN LL PT +GKTL A + V + K L +K +
Sbjct: 32 EAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKY-----E 86
Query: 334 DLQKIPFRKLKISRLKAKDFSTNNGMEQQLLTCITTI 370
+K L+I D+ + + +TT
Sbjct: 87 SFKKWEKIGLRIGIS-TGDYESRDEHLGDCDIIVTTS 122
Score = 29.4 bits (66), Expect = 5.7
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 31 QVIQGCNKAKNCLLESPTGSGKTL-ALLCSVLAWQRKEKE--------LVQQKMFE 77
+ ++ KN LL PT +GKTL A + V + K L +K
Sbjct: 32 EAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYES 87
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily
2 RNA helicase, ATP and dsRNA binding antiviral
signalling pathway; 3.00A {Anas platyrhynchos} PDB:
4a36_A*
Length = 556
Score = 29.9 bits (66), Expect = 4.1
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 30 LQVIQGCNKAKNCLLESPTGSGKTL-ALLCSVLAWQRKEKELVQQKMFEQRTQDL 83
+++ Q KN L+ +PTGSGKT ++L +Q + +F +
Sbjct: 13 IELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPV 67
Score = 29.9 bits (66), Expect = 4.1
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 282 LQVIQGCNKAKNCLLESPTGSGKTL-ALLCSVLAWQRKEKELVQQKMFEQRTQDL 335
+++ Q KN L+ +PTGSGKT ++L +Q + +F +
Sbjct: 13 IELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPV 67
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 29.8 bits (67), Expect = 4.4
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 38 KAKNCLLESPTGSGKTLALLCSVLAWQRKEKELV 71
K + PTGSGKT + + L+
Sbjct: 107 VDKRGCIVLPTGSGKT--HVAMAAINELSTPTLI 138
Score = 29.8 bits (67), Expect = 4.4
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 290 KAKNCLLESPTGSGKTLALLCSVLAWQRKEKELV 323
K + PTGSGKT + + L+
Sbjct: 107 VDKRGCIVLPTGSGKT--HVAMAAINELSTPTLI 138
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 29.6 bits (66), Expect = 4.6
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 654 SKNSQQGLSKWVRNQVQNTSSHNTFMENLRNFVRRRMEIQLEEERVKREEANLNEEEEVM 713
++ + + ++ R +N + + LR RRR Q+E + KR+E L + +
Sbjct: 6 DSSTSKFVPEYRRTNFKNKGRFSA--DELR---RRRDTQQVELRKAKRDE-ALAKRRNFI 59
Query: 714 DDTDRASSSQESTGGTQSQNSTVMPQRWAYLSLLKKLS 751
TD A S +E + + + ++L+
Sbjct: 60 PPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLN 97
>1i4u_A Crustacyanin; lipocalin fold, antiparallel beta barrel, transport
protein; 1.15A {Synthetic} SCOP: b.60.1.1 PDB: 1obq_A
1obu_A 1s2p_A 1h91_A 1gka_A 1s44_A
Length = 181
Score = 29.0 bits (64), Expect = 4.7
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 617 GDWYQIQAYRALNQALGRCIRHRYDW-GAILLVDQRFYSKN 656
G WYQ Q + +C+R+ Y + G +++ + +
Sbjct: 33 GVWYQFALTNNPYQLIEKCVRNEYSFDGKQFVIESTGIAYD 73
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 29.5 bits (67), Expect = 5.1
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 41 NCLLESPTGSGKTL 54
N LL PTGSGKTL
Sbjct: 53 NILLIGPTGSGKTL 66
Score = 29.5 bits (67), Expect = 5.1
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 293 NCLLESPTGSGKTL 306
N LL PTGSGKTL
Sbjct: 53 NILLIGPTGSGKTL 66
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 29.1 bits (66), Expect = 5.5
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 41 NCLLESPTGSGKTL 54
N LL PTGSGKTL
Sbjct: 74 NILLIGPTGSGKTL 87
Score = 29.1 bits (66), Expect = 5.5
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 293 NCLLESPTGSGKTL 306
N LL PTGSGKTL
Sbjct: 74 NILLIGPTGSGKTL 87
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase;
HET: ANP; 2.14A {Mus musculus}
Length = 555
Score = 29.1 bits (64), Expect = 7.2
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 16/79 (20%)
Query: 30 LQVIQGCNKAKNCLLESPTGSGKTLA---LLCSVLAWQRKE-----------KELVQQ-- 73
L++ K KN ++ +PTG GKT + L + +Q
Sbjct: 10 LELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQA 69
Query: 74 KMFEQRTQDLQKTSFVFCG 92
+F + + L G
Sbjct: 70 TVFSRYFERLGYNIASISG 88
Score = 28.7 bits (63), Expect = 9.1
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 16/71 (22%)
Query: 282 LQVIQGCNKAKNCLLESPTGSGKTLA---LLCSVLAWQRKE-----------KELVQQ-- 325
L++ K KN ++ +PTG GKT + L + +Q
Sbjct: 10 LELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQA 69
Query: 326 KMFEQRTQDLQ 336
+F + + L
Sbjct: 70 TVFSRYFERLG 80
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding,
cytoplasm, damage, DNA recombination, DNA repair,
DNA-binding; 1.95A {Thermotoga maritima}
Length = 356
Score = 28.5 bits (64), Expect = 9.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 680 ENLRNFVRRRMEIQLEEERVKREEANLNEEEEVMDDTDRASSSQEST 726
N F++ EI E ER RE+ L E+ ++ SS +E++
Sbjct: 310 SNAVQFLKDNPEIAGEIERRIREKYGLLSVEKEEQRKEKKSSGEEAS 356
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.393
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,311,708
Number of extensions: 654529
Number of successful extensions: 1466
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1435
Number of HSP's successfully gapped: 73
Length of query: 795
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 694
Effective length of database: 3,881,772
Effective search space: 2693949768
Effective search space used: 2693949768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.0 bits)