RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3462
(795 letters)
>d1vqox1 d.29.1.1 (X:7-88) Ribosomal protein L31e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 82
Score = 89.7 bits (223), Expect = 2e-22
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 126 RDYTIHMHKRLHKVGFKKRAPRAIKVVRAFVKKQMGTED--VRIDTRLNKHIWSKGINN 182
R TI + + KRA +A+ ++R + K ++ VR+D +N+ W++G N
Sbjct: 2 RVVTIPL-RDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRAN 59
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 35.0 bits (79), Expect = 0.011
Identities = 17/125 (13%), Positives = 32/125 (25%), Gaps = 3/125 (2%)
Query: 37 NKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELV---QQKMFEQRTQDLQKTSFVFCGR 93
K +L+ G+GKT L +LA + +
Sbjct: 5 KKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFH 64
Query: 94 SDFFLLFRERRISDTMVKKPATKKKPLNEVVTRDYTIHMHKRLHKVGFKKRAPRAIKVVR 153
+ F R + + L ++ + + H + A R R
Sbjct: 65 TQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHR 124
Query: 154 AFVKK 158
A +
Sbjct: 125 ARANE 129
Score = 31.6 bits (70), Expect = 0.14
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 289 NKAKNCLLESPTGSGKTLALLCSVLAWQRKEKELVQ 324
K +L+ G+GKT L +LA + +
Sbjct: 5 KKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTL 40
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 33.7 bits (76), Expect = 0.063
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 37 NKAKNCLLESPTGSGKTLALLCSVL--AWQRKEKELV 71
K + +++ G+GKT L +++ A +R + L+
Sbjct: 7 RKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLI 43
Score = 33.7 bits (76), Expect = 0.063
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 289 NKAKNCLLESPTGSGKTLALLCSVL--AWQRKEKELV 323
K + +++ G+GKT L +++ A +R + L+
Sbjct: 7 RKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLI 43
>d1z24a1 b.60.1.1 (A:1-189) Insecticyanin {Tobacco hornworm (Manduca
sexta) [TaxId: 7130]}
Length = 189
Score = 31.0 bits (69), Expect = 0.37
Identities = 8/53 (15%), Positives = 16/53 (30%)
Query: 617 GDWYQIQAYRALNQALGRCIRHRYDWGAILLVDQRFYSKNSQQGLSKWVRNQV 669
G W++I N+ G+C Y + + N + +
Sbjct: 25 GAWHEIAKLPLENENQGKCTIAEYKYDGKKASVYNSFVSNGVKEYMEGDLEIA 77
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 30.9 bits (68), Expect = 0.38
Identities = 23/115 (20%), Positives = 33/115 (28%), Gaps = 5/115 (4%)
Query: 38 KAKNCLLESPTGSGKTLALLCSVLAWQRKEKELVQQKMFEQRTQDLQKTSFVFCGRSDFF 97
K NCL+ PTG GKTL + K V + F
Sbjct: 22 KETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVL-----QHAESFRRLF 76
Query: 98 LLFRERRISDTMVKKPATKKKPLNEVVTRDYTIHMHKRLHKVGFKKRAPRAIKVV 152
L E+ ++ T K P + K T + G ++ V
Sbjct: 77 NLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVF 131
Score = 30.1 bits (66), Expect = 0.80
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 290 KAKNCLLESPTGSGKTLALLCSVLAWQRKEKELVQ 324
K NCL+ PTG GKTL + K V
Sbjct: 22 KETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVL 56
>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 299
Score = 30.1 bits (67), Expect = 0.89
Identities = 9/59 (15%), Positives = 19/59 (32%)
Query: 619 WYQIQAYRALNQALGRCIRHRYDWGAILLVDQRFYSKNSQQGLSKWVRNQVQNTSSHNT 677
+ HR +LV+ K S GLS+++ + + + +
Sbjct: 132 GMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSA 190
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 29.4 bits (65), Expect = 0.90
Identities = 14/118 (11%), Positives = 23/118 (19%), Gaps = 12/118 (10%)
Query: 295 LLESPTGSGKTLALLCSVLAWQRK------EKELVQQ------KMFEQRTQDLQKIPFRK 342
L +PTGSGK+ + + A K K +
Sbjct: 12 HLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTIT 71
Query: 343 LKISRLKAKDFSTNNGMEQQLLTCITTINQQEDELRQSTKKTRVDKLKVLNGRSKNLV 400
+ I + ++ L LV
Sbjct: 72 TGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLV 129
Score = 29.1 bits (64), Expect = 1.0
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 6/37 (16%)
Query: 43 LLESPTGSGKTLALLCSVLAWQRK------EKELVQQ 73
L +PTGSGK+ + + A K
Sbjct: 12 HLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLG 48
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.9 bits (66), Expect = 1.1
Identities = 16/144 (11%), Positives = 39/144 (27%), Gaps = 3/144 (2%)
Query: 287 GCNKAKNCLLESPTGSGKT---LALLCSVLAWQRKEKELVQQKMFEQRTQDLQKIPFRKL 343
G K L TG+GKT + + A + + ++ Q ++
Sbjct: 22 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFE 81
Query: 344 KISRLKAKDFSTNNGMEQQLLTCITTINQQEDELRQSTKKTRVDKLKVLNGRSKNLVSSI 403
++ R L + I + ++ + + + +
Sbjct: 82 EMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFV 141
Query: 404 DFILGLLYKGIQTCITTINQQEDE 427
+ G + T + T +
Sbjct: 142 IGVTGYAKQEEITGLFTNTSDQFM 165
>d1i4ua_ b.60.1.1 (A:) Alpha-crustacyanin {European lobster (Homarus
gammarus) [TaxId: 6707]}
Length = 181
Score = 29.4 bits (65), Expect = 1.3
Identities = 11/81 (13%), Positives = 27/81 (33%)
Query: 617 GDWYQIQAYRALNQALGRCIRHRYDWGAILLVDQRFYSKNSQQGLSKWVRNQVQNTSSHN 676
G WYQ Q + +C+R+ Y + V + L + + +
Sbjct: 33 GVWYQFALTNNPYQLIEKCVRNEYSFDGKQFVIESTGIAYDGNLLKRNGKLYPNPFGEPH 92
Query: 677 TFMENLRNFVRRRMEIQLEEE 697
++ +F + ++ +
Sbjct: 93 LSIDYENSFAAPLVILETDYS 113
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 29.5 bits (65), Expect = 1.5
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 290 KAKNCLLESPTGSGKTL-ALLCSVLAWQRKEKELVQQKMFEQRTQDLQKI 338
+ ++ +PTG GKT L S+ + ++ V Q + I
Sbjct: 57 RKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETI 106
Score = 28.3 bits (62), Expect = 3.4
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 38 KAKNCLLESPTGSGKTL-ALLCSVLAWQRKEKELVQQKMFEQRTQDLQK 85
+ ++ +PTG GKT L S+ + ++ V Q +
Sbjct: 57 RKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAET 105
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 29.3 bits (64), Expect = 1.6
Identities = 10/108 (9%), Positives = 30/108 (27%)
Query: 42 CLLESPTGSGKTLALLCSVLAWQRKEKELVQQKMFEQRTQDLQKTSFVFCGRSDFFLLFR 101
GSGKT + S + Q E ++ + K ++ +
Sbjct: 37 TEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM 96
Query: 102 ERRISDTMVKKPATKKKPLNEVVTRDYTIHMHKRLHKVGFKKRAPRAI 149
+ + + + D + +++ + + + +
Sbjct: 97 QMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLV 144
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 28.2 bits (62), Expect = 4.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 40 KNCLLESPTGSGKTL 54
KN L+ PTG GKT
Sbjct: 50 KNILMIGPTGVGKTE 64
Score = 28.2 bits (62), Expect = 4.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 292 KNCLLESPTGSGKTL 306
KN L+ PTG GKT
Sbjct: 50 KNILMIGPTGVGKTE 64
>d1gkab_ b.60.1.1 (B:) Alpha-crustacyanin {European lobster (Homarus
gammarus) [TaxId: 6707]}
Length = 174
Score = 27.5 bits (60), Expect = 5.0
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 617 GDWYQIQAYRALNQALGRCIRHRYDWGA---ILLVDQRFYSKNSQQGLSKWVRNQVQNTS 673
G WYQ Q + RCI Y++ V ++ N + + +
Sbjct: 28 GRWYQTHIIENAYQPVTRCIHSNYEYSTNDYGFKVTTAGFNPNDEYLKIDFKVYPTKEFP 87
Query: 674 SHNTFMENLRNF 685
+ + ++ F
Sbjct: 88 AAHMLIDAPSVF 99
>d1kt7a_ b.60.1.1 (A:) Retinol binding protein {Cow (Bos taurus)
[TaxId: 9913]}
Length = 175
Score = 27.1 bits (59), Expect = 5.4
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 617 GDWYQIQAYRALNQALGRCIRHRY 640
G WY + L I +
Sbjct: 22 GTWYAMAKKDPEGLFLQDNIVAEF 45
>d1qwda_ b.60.1.1 (A:) Outer membrane lipoprotein Blc {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 27.1 bits (59), Expect = 5.8
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 617 GDWYQIQAYRALNQALGRCIRHRYDWGAILLVDQRFYSKNSQQG 660
G WY+I + + + Y ++ N +G
Sbjct: 32 GTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRG 75
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 25.3 bits (55), Expect = 8.5
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 426 DELRQSTKKTKVDKLKVLN---GRSKNLVSSIDFILGLLYKGVNCEDYHVC 473
+E + S+K + + L+ G N I G YK C +YH+C
Sbjct: 2 EEFKNSSKLVAAAEKERLDKHLGIPCN-NCKQFPIEGKCYKCTECIEYHLC 51
>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 27.0 bits (59), Expect = 9.3
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 620 YQIQAYRALNQALGRCIRHRYDWGAILLVDQRFYSKNSQQGLSKWVRNQVQNTSSHNTFM 679
Q + HR +L+ + Y+K S GLSK +R +
Sbjct: 112 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGK 171
>d1kxoa_ b.60.1.1 (A:) Bilin-binding protein {Cabbage butterfly
(Pieris brassicae) [TaxId: 7116]}
Length = 171
Score = 26.4 bits (57), Expect = 9.9
Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 617 GDWYQIQAYRALNQALGRCIRHRYDWGAILLVDQRFYSKNSQQGLSK---WVRNQVQNTS 673
G W+Q+ AY G+C Y + R+ + ++ S+ + +
Sbjct: 24 GKWWQVAAYPDHITKYGKCGWAEYTPEGKSVKVSRYSVIHGKEYFSEGTAYPVGDSKIGK 83
Query: 674 SHNTFMENLRNFVRRRMEIQLEEE 697
++++ + + +
Sbjct: 84 IYHSYTIGGVTQEGVFNVLSTDNK 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.393
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,799,591
Number of extensions: 130217
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's gapped: 422
Number of HSP's successfully gapped: 36
Length of query: 795
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 702
Effective length of database: 1,130,706
Effective search space: 793755612
Effective search space used: 793755612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)