BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3466
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LF7|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus
pdb|3LFI|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus In Complex With Glucose
pdb|3LFI|B Chain B, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus In Complex With Glucose
Length = 634
Score = 32.0 bits (71), Expect = 0.081, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 60 FHRGDLLFLTNYQEEPVRVGEI-VVFKVEGRDIPIVHRVLKLHE 102
F G++LFLT +P + GE+ V EG +PIV +V +H+
Sbjct: 272 FETGNVLFLTEEGHDP-QTGEVFVTLGTEGSGLPIVPQVSSIHD 314
>pdb|3LDK|A Chain A, Crystal Structure Of A. Japonicus Cb05
pdb|3LDR|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Japonicus In Complex With 1-Kestose
pdb|3LEM|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Ja Complex With Nystose
pdb|3LIG|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Ja
pdb|3LIH|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Japonicus In Complex With Raffinose
Length = 634
Score = 32.0 bits (71), Expect = 0.081, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 60 FHRGDLLFLTNYQEEPVRVGEI-VVFKVEGRDIPIVHRVLKLHE 102
F G++LFLT +P + GE+ V EG +PIV +V +H+
Sbjct: 272 FETGNVLFLTEEGHDP-QTGEVFVTLGTEGSGLPIVPQVSSIHD 314
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 55 SMEPAFHRGDLLF-LTNYQEEPVRVGEIVVFKVEGRDIPIVH 95
S +P F +GDL++ +T ++E + +FK+ +D+P+ +
Sbjct: 88 SGDPKFQKGDLVWGMTGWEEYSIITPTQTLFKIHDKDVPLSY 129
>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4
pdb|1EHW|B Chain B, Human Nucleoside Diphosphate Kinase 4
Length = 162
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 7 NDLKRLNKRQFLYQVLSFGMIVSSALMIWKGLMVLTGSESPIVVVLSGSMEPAFHRGDL 65
DL+R L + +S G +V+ M+W+G V+ S + I S P RGD
Sbjct: 73 QDLRRKPFYPALIRYMSSGPVVA---MVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDF 128
>pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
Length = 667
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 42 TGSESPIVVVLSGSMEPAFHRGD-----LLFLTNYQEE-PVRVGEIVVFKVEGRDIPIVH 95
TG +P+ G +EP F G L +Y EE +R+G+ V+ G IP V
Sbjct: 332 TGRVTPV-----GVLEPVFIEGSEVSRVTLHNESYIEELDIRIGDWVLVHKAGGVIPEVL 386
Query: 96 RVLK 99
RVLK
Sbjct: 387 RVLK 390
>pdb|1V9P|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase
pdb|1V9P|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase
Length = 584
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 42 TGSESPIVVVLSGSMEPAFHRGD-----LLFLTNYQEE-PVRVGEIVVFKVEGRDIPIVH 95
TG +P+ G +EP F G L +Y EE +R+G+ V+ G IP V
Sbjct: 335 TGRVTPV-----GVLEPVFIEGSEVSRVTLHNESYIEELDIRIGDWVLVHKAGGVIPEVL 389
Query: 96 RVLK 99
RVLK
Sbjct: 390 RVLK 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,717,453
Number of Sequences: 62578
Number of extensions: 90542
Number of successful extensions: 292
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 14
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)