Query psy3466
Match_columns 103
No_of_seqs 157 out of 1112
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 17:25:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 99.6 7.7E-17 2.6E-21 118.0 3.0 56 48-103 8-78 (248)
2 1umu_A UMUD'; induced mutagene 99.1 9.5E-11 3.2E-15 76.3 6.1 49 48-100 29-78 (116)
3 1kca_A Repressor protein CI; g 99.1 1.8E-10 6.1E-15 74.7 6.5 52 48-102 15-72 (109)
4 2hnf_A Repressor protein CI101 99.0 1.4E-09 4.9E-14 72.3 6.9 51 48-101 46-102 (133)
5 1jhf_A LEXA repressor; LEXA SO 98.8 1.3E-08 4.4E-13 71.3 6.1 48 48-99 112-160 (202)
6 3k2z_A LEXA repressor; winged 98.6 8.7E-08 3E-12 67.1 7.1 50 48-101 111-161 (196)
7 3bdn_A Lambda repressor; repre 98.6 5.1E-08 1.7E-12 69.2 5.9 52 48-102 142-199 (236)
8 2fjr_A Repressor protein CI; g 94.4 0.073 2.5E-06 35.8 5.2 45 53-102 112-156 (189)
9 3cx5_E Cytochrome B-C1 complex 83.8 4.3 0.00015 27.8 6.8 25 63-90 61-85 (185)
10 2qjy_C Ubiquinol-cytochrome C 72.8 9.1 0.00031 26.2 5.7 60 12-90 9-71 (187)
11 2dgy_A MGC11102 protein; EIF-1 63.7 5.6 0.00019 25.4 2.8 10 76-85 54-63 (111)
12 1w4s_A Polybromo, polybromo 1 62.6 8.8 0.0003 25.8 3.8 44 57-100 6-52 (174)
13 1jt8_A EIF-1A, probable transl 61.1 3.6 0.00012 26.0 1.5 22 61-82 60-81 (102)
14 3i4o_A Translation initiation 60.4 2.9 9.8E-05 25.3 0.9 14 74-87 52-65 (79)
15 3bz1_X Photosystem II PSBX pro 52.9 26 0.00088 19.3 3.9 15 1-15 1-15 (50)
16 3iuw_A Activating signal coint 52.6 17 0.00059 22.0 3.5 25 62-86 24-48 (83)
17 2kog_A Vesicle-associated memb 47.1 47 0.0016 21.1 5.2 10 12-21 91-100 (119)
18 1yel_A AT1G16640; CESG, protei 45.1 18 0.0006 22.0 2.8 18 73-90 75-92 (104)
19 1q90_R Cytochrome B6-F complex 43.0 40 0.0014 18.3 4.8 31 11-41 8-38 (49)
20 2kku_A Uncharacterized protein 41.8 30 0.001 23.5 3.7 51 49-99 31-87 (161)
21 1pp9_E Ubiquinol-cytochrome C 41.3 64 0.0022 22.1 5.5 16 74-89 79-94 (196)
22 2wqt_A 2-keto-4-pentenoate hyd 39.5 30 0.001 24.7 3.7 31 59-89 222-253 (270)
23 2dfu_A Probable 2-hydroxyhepta 39.4 59 0.002 23.2 5.3 40 59-99 218-258 (264)
24 1d7q_A Translation initiation 38.8 44 0.0015 22.2 4.1 24 61-85 71-94 (143)
25 1lgp_A Cell cycle checkpoint p 38.8 20 0.00067 22.0 2.3 37 49-87 60-96 (116)
26 2k1g_A Lipoprotein SPR; soluti 38.6 16 0.00056 23.7 2.0 10 60-69 68-77 (135)
27 3r8s_R 50S ribosomal protein L 37.1 44 0.0015 20.8 3.7 34 49-85 3-36 (103)
28 4dbf_A 2-hydroxyhepta-2,4-dien 36.4 33 0.0011 25.2 3.5 32 58-89 246-278 (288)
29 3v2d_V 50S ribosomal protein L 35.6 43 0.0015 20.9 3.5 33 49-84 3-35 (101)
30 3s52_A Putative fumarylacetoac 35.5 21 0.0007 25.0 2.2 31 58-88 182-213 (221)
31 4dov_A ORC1, origin recognitio 35.5 28 0.00095 23.7 2.8 31 52-83 32-62 (163)
32 2jyx_A Lipoprotein SPR; soluti 35.4 28 0.00096 22.3 2.7 13 74-86 66-78 (136)
33 1wzo_A HPCE; structural genomi 33.9 56 0.0019 22.9 4.3 31 59-89 204-235 (246)
34 1pi7_A VPU protein, U ORF prot 33.5 51 0.0018 16.8 3.6 20 21-40 8-27 (36)
35 1p3h_A 10 kDa chaperonin; beta 33.4 13 0.00045 23.2 0.8 14 59-72 61-74 (99)
36 3rr6_A Putative uncharacterize 33.2 54 0.0019 23.6 4.2 31 59-89 222-253 (265)
37 2k9x_A Tburm1, uncharacterized 33.0 54 0.0018 20.5 3.7 28 60-87 64-98 (110)
38 1we3_O CPN10(groes); chaperoni 32.2 12 0.00042 23.4 0.5 18 59-76 63-80 (100)
39 4i1k_A B3 domain-containing tr 32.2 49 0.0017 21.6 3.5 16 74-89 115-130 (146)
40 2pp6_A Gifsy-2 prophage ATP-bi 32.0 41 0.0014 21.2 3.0 24 73-99 61-84 (102)
41 3p8d_A Medulloblastoma antigen 32.0 25 0.00085 20.4 1.8 15 55-69 2-16 (67)
42 2eko_A Histone acetyltransfera 31.6 36 0.0012 20.6 2.6 44 53-96 3-50 (87)
43 1xne_A Hypothetical protein PF 31.4 45 0.0015 21.1 3.1 14 73-86 32-45 (113)
44 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 31.3 22 0.00076 25.4 1.9 30 59-88 228-258 (267)
45 3va4_A Mediator of DNA damage 30.9 33 0.0011 22.0 2.5 36 49-84 81-116 (132)
46 3nx6_A 10KDA chaperonin; bacte 30.3 12 0.00041 23.2 0.2 14 59-72 58-71 (95)
47 3l53_A Putative fumarylacetoac 30.0 30 0.001 24.2 2.3 30 58-87 180-210 (224)
48 1zhv_A Hypothetical protein AT 29.9 59 0.002 21.1 3.6 35 54-88 2-41 (134)
49 1saw_A Hypothetical protein FL 28.7 51 0.0017 22.8 3.3 31 59-89 182-213 (225)
50 1pcq_O Groes protein; chaperon 28.7 18 0.00061 22.5 0.8 12 59-70 58-69 (97)
51 2ja9_A Exosome complex exonucl 28.6 34 0.0011 23.2 2.3 18 53-70 45-62 (175)
52 3oyy_A EF-P, elongation factor 28.5 58 0.002 22.4 3.5 38 55-98 152-190 (191)
53 2j66_A BTRK, decarboxylase; bu 28.4 46 0.0016 24.9 3.2 28 60-88 346-373 (428)
54 4dov_A ORC1, origin recognitio 27.7 84 0.0029 21.3 4.1 27 74-100 37-63 (163)
55 3mt1_A Putative carboxynorsper 27.2 48 0.0017 24.4 3.1 30 58-88 293-322 (365)
56 2q18_X 2-keto-3-deoxy-D-arabin 27.1 1.1E+02 0.0036 22.1 4.9 39 59-98 245-287 (293)
57 1ueb_A EF-P, TT0860, elongatio 26.9 64 0.0022 22.0 3.5 39 53-97 145-184 (184)
58 1yby_A Translation elongation 26.8 63 0.0021 22.7 3.5 39 53-97 176-215 (215)
59 1wid_A DNA-binding protein RAV 26.7 62 0.0021 20.5 3.2 16 73-88 89-104 (130)
60 3dl8_C SECE; RECA-type ATPase 25.7 55 0.0019 18.4 2.5 13 2-14 8-20 (65)
61 4ejq_A Kinesin-like protein KI 25.5 39 0.0013 22.1 2.1 32 49-84 102-133 (154)
62 1hr0_W Translation initiation 25.2 60 0.0021 18.4 2.7 14 74-87 45-58 (71)
63 2zjr_O 50S ribosomal protein L 24.8 29 0.00098 21.6 1.3 33 50-85 4-36 (100)
64 3n29_A Carboxynorspermidine de 24.5 55 0.0019 24.8 3.1 30 58-88 347-376 (418)
65 3khs_A Purine nucleoside phosp 24.4 28 0.00095 25.4 1.3 21 50-70 111-131 (285)
66 3fuc_A Purine nucleoside phosp 24.3 28 0.00095 25.4 1.3 20 51-70 115-134 (284)
67 2lkt_A Retinoic acid receptor 24.1 43 0.0015 20.9 2.0 16 74-89 6-21 (125)
68 1qe5_A Pentosyltransferase; en 24.0 29 0.00098 25.0 1.3 21 50-70 117-137 (266)
69 2lqk_A Transcriptional regulat 29.8 16 0.00056 21.0 0.0 15 55-70 3-17 (70)
70 2hd9_A UPF0310 protein PH1033; 23.8 66 0.0022 20.9 3.0 15 74-88 33-47 (145)
71 2z0t_A Putative uncharacterize 23.8 58 0.002 20.5 2.6 23 74-100 32-54 (109)
72 1g2o_A Purine nucleoside phosp 23.5 30 0.001 25.0 1.3 20 51-70 119-138 (268)
73 2qgh_A Diaminopimelate decarbo 23.2 70 0.0024 23.9 3.4 29 59-88 348-376 (425)
74 1gtt_A 4-hydroxyphenylacetate 22.9 73 0.0025 24.3 3.5 31 59-89 384-415 (429)
75 1vmk_A Purine nucleoside phosp 22.8 31 0.0011 25.0 1.3 21 50-70 121-141 (277)
76 1xfc_A Alanine racemase; alpha 22.5 1.2E+02 0.004 22.3 4.5 25 64-88 320-345 (384)
77 1twi_A Diaminopimelate decarbo 22.4 74 0.0025 23.7 3.4 29 59-88 357-385 (434)
78 3odg_A Xanthosine phosphorylas 22.2 32 0.0011 25.1 1.3 20 51-70 124-143 (287)
79 3bbo_M Ribosomal protein L14; 22.2 1.6E+02 0.0055 18.8 4.8 35 48-82 21-58 (121)
80 3v2d_O 50S ribosomal protein L 22.0 1.6E+02 0.0056 18.8 5.0 35 48-82 21-58 (122)
81 2o0t_A Diaminopimelate decarbo 21.6 64 0.0022 24.6 2.9 30 59-88 376-405 (467)
82 1zvp_A Hypothetical protein VC 21.1 55 0.0019 21.2 2.2 35 55-89 14-50 (133)
83 1ybf_A AMP nucleosidase; struc 21.0 54 0.0019 23.1 2.3 18 53-70 97-114 (268)
84 3lzk_A Fumarylacetoacetate hyd 20.8 2E+02 0.0067 21.6 5.4 26 75-100 326-356 (359)
85 7odc_A Protein (ornithine deca 20.2 73 0.0025 24.1 3.0 30 58-88 358-387 (424)
86 1dm9_A Hypothetical 15.5 KD pr 20.0 90 0.0031 19.9 3.0 26 74-101 47-72 (133)
87 1tcv_A Purine-nucleoside phosp 20.0 38 0.0013 24.6 1.3 18 53-70 119-136 (287)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=99.63 E-value=7.7e-17 Score=117.95 Aligned_cols=56 Identities=27% Similarity=0.475 Sum_probs=48.8
Q ss_pred eEEEeCCCccccccCCCEEEEeecC--------------CCCCCCCcEEEEEeCCC-CcCEEEEEEEecCC
Q psy3466 48 IVVVLSGSMEPAFHRGDLLFLTNYQ--------------EEPVRVGEIVVFKVEGR-DIPIVHRVLKLHEK 103 (103)
Q Consensus 48 ~~~V~g~SM~Ptl~~gD~v~v~~~~--------------~~~~~~GDIVvf~~~~~-~~~~ikRVi~~~~~ 103 (103)
++.|+|+||+|||++||+|+++|.. ..++++||||+|+.|.. ...+||||+|+|+.
T Consensus 8 ~~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD 78 (248)
T 1b12_A 8 PFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGD 78 (248)
T ss_dssp EEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTC
T ss_pred EEEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCC
Confidence 3899999999999999999999942 36899999999998854 46799999999873
No 2
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.13 E-value=9.5e-11 Score=76.30 Aligned_cols=49 Identities=27% Similarity=0.319 Sum_probs=43.2
Q ss_pred eEEEeCCCccc-cccCCCEEEEeecCCCCCCCCcEEEEEeCCCCcCEEEEEEEe
Q psy3466 48 IVVVLSGSMEP-AFHRGDLLFLTNYQEEPVRVGEIVVFKVEGRDIPIVHRVLKL 100 (103)
Q Consensus 48 ~~~V~g~SM~P-tl~~gD~v~v~~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~~ 100 (103)
.+.|.|+||+| +|++||.+++++. .+++.||++++..++ +.++||+...
T Consensus 29 ~~~v~GdSM~p~~i~~Gd~v~vd~~--~~~~~gdivv~~~~~--~~~vKr~~~~ 78 (116)
T 1umu_A 29 FVKASGDSMIDGGISDGDLLIVDSA--ITASHGDIVIAAVDG--EFTVKKLQLR 78 (116)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEETT--SCCCTTCEEEEEETT--EEEEEEEECS
T ss_pred EEEECCCCcCCCCCCCCCEEEEEcC--CCCCCCCEEEEEECC--EEEEEEEEeC
Confidence 48899999999 8999999999984 469999999999875 5799999864
No 3
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.10 E-value=1.8e-10 Score=74.69 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=44.9
Q ss_pred eEEEeCCCcc------ccccCCCEEEEeecCCCCCCCCcEEEEEeCCCCcCEEEEEEEecC
Q psy3466 48 IVVVLSGSME------PAFHRGDLLFLTNYQEEPVRVGEIVVFKVEGRDIPIVHRVLKLHE 102 (103)
Q Consensus 48 ~~~V~g~SM~------Ptl~~gD~v~v~~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~~~~ 102 (103)
.+.|.|+||+ |+|++||.+++++. .+++.||++++..++ ++.++||++..++
T Consensus 15 ~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~--~~~~~Gdivv~~~~~-~~~~vKrl~~~~~ 72 (109)
T 1kca_A 15 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE--QAVEPGDFCIARLGG-DEFTFKKLIRDSG 72 (109)
T ss_dssp EEECCSSTTCCCTTCSSCCCTTCEEEEETT--SCCCTTCEEEEECST-TCEEEEEEEEETT
T ss_pred EEEEeCcCcCCCCCCCCeeCCCCEEEEecC--CcCCCCCEEEEEECC-CeEEEEEEEEeCC
Confidence 5889999999 99999999999984 469999999999876 3679999987543
No 4
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.97 E-value=1.4e-09 Score=72.33 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=44.4
Q ss_pred eEEEeCCCcc------ccccCCCEEEEeecCCCCCCCCcEEEEEeCCCCcCEEEEEEEec
Q psy3466 48 IVVVLSGSME------PAFHRGDLLFLTNYQEEPVRVGEIVVFKVEGRDIPIVHRVLKLH 101 (103)
Q Consensus 48 ~~~V~g~SM~------Ptl~~gD~v~v~~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~~~ 101 (103)
.+.|.|+||+ |+|++||.+++++. .+++.||+|++..++ ++.++||++..+
T Consensus 46 ~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~--~~~~~Gdivv~~~~~-~~~~vKrl~~~~ 102 (133)
T 2hnf_A 46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPE--QAVEPGDFCIARLGG-DEFTFAKLIRDS 102 (133)
T ss_dssp EEECCSSTTCCC---CCCCCTTCEEEEETT--SCCCTTSEEEEEETT-TEEEEEEEEEET
T ss_pred EEEEeCCCcCCCcCCCCccCCCCEEEEccC--CCCCCCCEEEEEECC-CEEEEEEEEEeC
Confidence 5889999999 99999999999984 478999999999876 367999998644
No 5
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.76 E-value=1.3e-08 Score=71.30 Aligned_cols=48 Identities=31% Similarity=0.430 Sum_probs=41.9
Q ss_pred eEEEeCCCcccc-ccCCCEEEEeecCCCCCCCCcEEEEEeCCCCcCEEEEEEE
Q psy3466 48 IVVVLSGSMEPA-FHRGDLLFLTNYQEEPVRVGEIVVFKVEGRDIPIVHRVLK 99 (103)
Q Consensus 48 ~~~V~g~SM~Pt-l~~gD~v~v~~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~ 99 (103)
.+.|.|+||+|+ |.+||.+++++. .+++.||++++..++ +.++||+.-
T Consensus 112 ~~~v~GdSM~p~~i~~Gd~v~vd~~--~~~~~G~i~v~~~~~--~~~vKrl~~ 160 (202)
T 1jhf_A 112 LLRVSGMSMKDIGIMDGDLLAVHKT--QDVRNGQVVVARIDD--EVTVKRLKK 160 (202)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEEC--SCCCTTSEEEEEETT--EEEEEEEEE
T ss_pred EEEECCCCCCCCCCCCCCEEEEecc--CCcCCCeEEEEEECC--EEEEEEEEE
Confidence 578899999999 999999999984 468999999998864 579999983
No 6
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.63 E-value=8.7e-08 Score=67.13 Aligned_cols=50 Identities=24% Similarity=0.340 Sum_probs=43.1
Q ss_pred eEEEeCCCc-cccccCCCEEEEeecCCCCCCCCcEEEEEeCCCCcCEEEEEEEec
Q psy3466 48 IVVVLSGSM-EPAFHRGDLLFLTNYQEEPVRVGEIVVFKVEGRDIPIVHRVLKLH 101 (103)
Q Consensus 48 ~~~V~g~SM-~Ptl~~gD~v~v~~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~~~ 101 (103)
.+.|.|+|| +|++.+||.+++++. ..++.||+|++..++ +.++||+.-.+
T Consensus 111 ~l~v~GdSM~~p~i~~GD~viv~~~--~~~~~G~ivv~~~~~--~~~vKr~~~~~ 161 (196)
T 3k2z_A 111 LLKVKGESMIEEHICDGDLVLVRRQ--DWAQNGDIVAAMVDG--EVTLAKFYQRG 161 (196)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEEC--SCCCTTCEEEEEETT--EEEEEEEEEET
T ss_pred EEEEeCCCcCCCCCCCCCEEEEecc--CcCCCCCEEEEEECC--cEEEEEEEEEC
Confidence 588999999 699999999999984 578999999998875 57999987543
No 7
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.63 E-value=5.1e-08 Score=69.20 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=43.5
Q ss_pred eEEEeCCCcc------ccccCCCEEEEeecCCCCCCCCcEEEEEeCCCCcCEEEEEEEecC
Q psy3466 48 IVVVLSGSME------PAFHRGDLLFLTNYQEEPVRVGEIVVFKVEGRDIPIVHRVLKLHE 102 (103)
Q Consensus 48 ~~~V~g~SM~------Ptl~~gD~v~v~~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~~~~ 102 (103)
.+.|.|+||+ |+|.+||.|++++- .+++.||++++..++ ++.++||+...++
T Consensus 142 ~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~--~~~~~g~ivv~~~~~-~~~~vKrl~~~~~ 199 (236)
T 3bdn_A 142 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE--QAVEPGDFCIARLGG-DEFTFKKLIRGSG 199 (236)
T ss_dssp EEECCSSSSCCCSSCSSCCCSSCEEEECCS--SCCCTTSEEEEESTT-TCCCCEEEECCSS
T ss_pred EEEEeCCCcCCCCCCCCcCCCCCEEEECCC--CCCCCCcEEEEEECC-CeEEEEEEEEcCC
Confidence 5689999999 99999999999984 478999999998753 2579999986443
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=94.40 E-value=0.073 Score=35.85 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=35.0
Q ss_pred CCCccccccCCCEEEEeecCCCCCCCCcEEEEEeCCCCcCEEEEEEEecC
Q psy3466 53 SGSMEPAFHRGDLLFLTNYQEEPVRVGEIVVFKVEGRDIPIVHRVLKLHE 102 (103)
Q Consensus 53 g~SM~Ptl~~gD~v~v~~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~~~~ 102 (103)
+++|.+.-++||.|++++- .+..|+++++..++ +.++||+.-.++
T Consensus 112 ~~~~~~v~~~Gd~v~Vd~~---~~~~g~i~vv~~~g--~~~vKrl~~~~~ 156 (189)
T 2fjr_A 112 LTDGMAIRSEGKIYFVDKQ---ASLSDGLWLVDIKG--AISIRELTKLPG 156 (189)
T ss_dssp CSSEEEEEETTEEEEEETT---CCSCSEEEEEEETT--EEEEEEEEEETT
T ss_pred CCCeEEEeeCCcEEEEEcC---CccCCCEEEEEeCC--eEEEEEEEECCC
Confidence 3466666689999999974 47889999998876 579999976543
No 9
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=83.78 E-value=4.3 Score=27.85 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=16.1
Q ss_pred CCEEEEeecCCCCCCCCcEEEEEeCCCC
Q psy3466 63 GDLLFLTNYQEEPVRVGEIVVFKVEGRD 90 (103)
Q Consensus 63 gD~v~v~~~~~~~~~~GDIVvf~~~~~~ 90 (103)
...+-++ . .+++.|+.++++..+++
T Consensus 61 ~~~v~V~-~--s~l~~G~~~~v~~~g~p 85 (185)
T 3cx5_E 61 MAKVEVN-L--AAIPLGKNVVVKWQGKP 85 (185)
T ss_dssp CCCEEEE-G--GGCCTTCEEEEEETTEE
T ss_pred cCcEEEE-H--HHCCCCCeEEEEECCeE
Confidence 4455553 2 56778888888777653
No 10
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=72.77 E-value=9.1 Score=26.18 Aligned_cols=60 Identities=22% Similarity=0.380 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeEEEeCCCccccccC---CCEEEEeecCCCCCCCCcEEEEEeCC
Q psy3466 12 LNKRQFLYQVLSFGMIVSSALMIWKGLMVLTGSESPIVVVLSGSMEPAFHR---GDLLFLTNYQEEPVRVGEIVVFKVEG 88 (103)
Q Consensus 12 ~~~r~~~~~i~~i~~~~~i~~li~~~~~~~~g~~~~~~~V~g~SM~Ptl~~---gD~v~v~~~~~~~~~~GDIVvf~~~~ 88 (103)
+.+|+++..+...+.++..+.+++.++ .||.|.-.. + .+-+ +..++..|+.+.++..+
T Consensus 9 ~~RR~Fl~~~~~~~~~~~a~~~~~p~v---------------~~~~p~~~~~a~~-~v~v---~ls~l~~G~~~~v~~~g 69 (187)
T 2qjy_C 9 GTRRDFLYYATAGAGAVATGAAVWPLI---------------NQMNPSADVQALA-SIFV---DVSSVEPGVQLTVKFLG 69 (187)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HTTSCCTTTSCCC-CEEE---ECTTCCTTEEEEEEETT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH---------------HhcCCchhhcccc-cEEE---EHHHCCCCCeEEEEECC
Confidence 556777776655555554444554443 234444332 2 2333 23788899999998877
Q ss_pred CC
Q psy3466 89 RD 90 (103)
Q Consensus 89 ~~ 90 (103)
++
T Consensus 70 ~p 71 (187)
T 2qjy_C 70 KP 71 (187)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 11
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.65 E-value=5.6 Score=25.40 Aligned_cols=10 Identities=10% Similarity=0.654 Sum_probs=5.1
Q ss_pred CCCCcEEEEE
Q psy3466 76 VRVGEIVVFK 85 (103)
Q Consensus 76 ~~~GDIVvf~ 85 (103)
+.+||.|+..
T Consensus 54 I~~GD~VlVe 63 (111)
T 2dgy_A 54 IKRGDFLIVD 63 (111)
T ss_dssp CCSSCEEEEE
T ss_pred EcCCCEEEEE
Confidence 4455555554
No 12
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=62.61 E-value=8.8 Score=25.78 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=18.7
Q ss_pred cccccCCCEEEEee--cCCCCCCCCcEEEEEeCCC-CcCEEEEEEEe
Q psy3466 57 EPAFHRGDLLFLTN--YQEEPVRVGEIVVFKVEGR-DIPIVHRVLKL 100 (103)
Q Consensus 57 ~Ptl~~gD~v~v~~--~~~~~~~~GDIVvf~~~~~-~~~~ikRVi~~ 100 (103)
+|-...+++.+... ++...++.||-|.++.++. ...+|.||..+
T Consensus 6 ~~~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i 52 (174)
T 1w4s_A 6 SAGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERL 52 (174)
T ss_dssp --------------------CCCTTCEEEECCSSTTSCCEEEEEEEE
T ss_pred CccccCCCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEE
Confidence 36666666666554 3445778888888876653 35788887754
No 13
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=61.05 E-value=3.6 Score=25.96 Aligned_cols=22 Identities=14% Similarity=0.404 Sum_probs=9.8
Q ss_pred cCCCEEEEeecCCCCCCCCcEE
Q psy3466 61 HRGDLLFLTNYQEEPVRVGEIV 82 (103)
Q Consensus 61 ~~gD~v~v~~~~~~~~~~GDIV 82 (103)
.+||.|++....+.+..+|||+
T Consensus 60 ~~GD~VlVe~~~yd~~~Kg~Iv 81 (102)
T 1jt8_A 60 REGDVVIVKPWEVQGDQKCDII 81 (102)
T ss_dssp CSCEEEEECCBCCTTSEEEEEE
T ss_pred cCCCEEEEEeccCCCCceEEEE
Confidence 3555555554322224445543
No 14
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=60.41 E-value=2.9 Score=25.25 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=9.7
Q ss_pred CCCCCCcEEEEEeC
Q psy3466 74 EPVRVGEIVVFKVE 87 (103)
Q Consensus 74 ~~~~~GDIVvf~~~ 87 (103)
-.+..||.|.+...
T Consensus 52 I~Il~GD~V~ve~~ 65 (79)
T 3i4o_A 52 IRILPEDRVVVELS 65 (79)
T ss_dssp CCCCTTCEEEEEEE
T ss_pred ccCCCCCEEEEEEC
Confidence 45777888887654
No 15
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=52.90 E-value=26 Score=19.31 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=2.9
Q ss_pred ChHHHHHHHHhhhHH
Q psy3466 1 MIQDAINDLKRLNKR 15 (103)
Q Consensus 1 ~~~~~~~~~~~~~~r 15 (103)
|||++-+++-.|...
T Consensus 1 ~~~~~~~~l~~mTpS 15 (50)
T 3bz1_X 1 MIQSASSLLLTITPS 15 (50)
T ss_dssp ----------CCCHH
T ss_pred CcchhhhHHhhcCHH
Confidence 789988888887543
No 16
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=52.56 E-value=17 Score=22.00 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=16.3
Q ss_pred CCCEEEEeecCCCCCCCCcEEEEEe
Q psy3466 62 RGDLLFLTNYQEEPVRVGEIVVFKV 86 (103)
Q Consensus 62 ~gD~v~v~~~~~~~~~~GDIVvf~~ 86 (103)
.|..-+--|.+.++++.||++.|..
T Consensus 24 ~G~Kt~EiR~nDr~~~vGD~l~l~E 48 (83)
T 3iuw_A 24 ERRKTFEIRKNDRNFQVGDILILEE 48 (83)
T ss_dssp TTSCCEEEEECCSCCCTTCEEEEEE
T ss_pred cCCcEEEEEecccCCCCCCEEEEEE
Confidence 4544444443347799999999853
No 17
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=47.12 E-value=47 Score=21.13 Aligned_cols=10 Identities=0% Similarity=-0.060 Sum_probs=4.3
Q ss_pred hhHHHHHHHH
Q psy3466 12 LNKRQFLYQV 21 (103)
Q Consensus 12 ~~~r~~~~~i 21 (103)
|-++....++
T Consensus 91 mwwkn~K~~i 100 (119)
T 2kog_A 91 YWWKNLKMMI 100 (119)
T ss_dssp HSCHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 18
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=45.07 E-value=18 Score=22.03 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=15.1
Q ss_pred CCCCCCCcEEEEEeCCCC
Q psy3466 73 EEPVRVGEIVVFKVEGRD 90 (103)
Q Consensus 73 ~~~~~~GDIVvf~~~~~~ 90 (103)
..+++.||+++|+..+..
T Consensus 75 ~~~L~~GD~lvF~~~~~~ 92 (104)
T 1yel_A 75 DNNLEDGKYLQFIYDRDR 92 (104)
T ss_dssp HHTCCTTCEEEEEECSSS
T ss_pred HcCCCCCCEEEEEEcCCC
Confidence 368999999999988754
No 19
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=42.97 E-value=40 Score=18.32 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3466 11 RLNKRQFLYQVLSFGMIVSSALMIWKGLMVL 41 (103)
Q Consensus 11 ~~~~r~~~~~i~~i~~~~~i~~li~~~~~~~ 41 (103)
.|.+|+++.++.....++..+.++.-++.++
T Consensus 8 dm~RRqfln~l~~G~~a~~a~~~~~P~v~ff 38 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLPITTLALGYGAFF 38 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 3778999988877666666666665555443
No 20
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}
Probab=41.77 E-value=30 Score=23.52 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=34.4
Q ss_pred EEEeCCCccccccCCCEEEEeec-CCCCCCCCcEEEEEeCCCC-----cCEEEEEEE
Q psy3466 49 VVVLSGSMEPAFHRGDLLFLTNY-QEEPVRVGEIVVFKVEGRD-----IPIVHRVLK 99 (103)
Q Consensus 49 ~~V~g~SM~Ptl~~gD~v~v~~~-~~~~~~~GDIVvf~~~~~~-----~~~ikRVi~ 99 (103)
+.|+-.-|+--+..|..+++.+. .+..+++||.|+|....+. ..-|++|+.
T Consensus 31 lSIkpey~~rIf~~GkK~flrr~~v~~~l~~Gd~vviYaS~P~~~iVGea~I~~Ii~ 87 (161)
T 2kku_A 31 YPIPKRFMDRFFKKGKDVFVKPATVWKELKPGMKFVFYQSHEDTGFVGEARIKRVVL 87 (161)
T ss_dssp ECCSSSTTHHHHHHSCEEEEESSCSCTTCCTTEEEEECCCSTTCBCCEEEEEEEEEE
T ss_pred EecCHHHHHHHHhcCceEEEeccCcccccCCCCEEEEEEcCCCcEEEEEEEEEEEEe
Confidence 44555555555568988887662 2457999999998765432 356888875
No 21
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=41.33 E-value=64 Score=22.11 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=10.4
Q ss_pred CCCCCCcEEEEEeCCC
Q psy3466 74 EPVRVGEIVVFKVEGR 89 (103)
Q Consensus 74 ~~~~~GDIVvf~~~~~ 89 (103)
.++..|+.++|+..++
T Consensus 79 s~l~~G~~~~v~~~G~ 94 (196)
T 1pp9_E 79 SDIPEGKNMAFKWRGK 94 (196)
T ss_dssp GGSCTTCEEEEEETTE
T ss_pred HHCCCCCeEEEEECCE
Confidence 4566777777766654
No 22
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A
Probab=39.45 E-value=30 Score=24.74 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=23.9
Q ss_pred cccCCCEEEEeec-CCCCCCCCcEEEEEeCCC
Q psy3466 59 AFHRGDLLFLTNY-QEEPVRVGEIVVFKVEGR 89 (103)
Q Consensus 59 tl~~gD~v~v~~~-~~~~~~~GDIVvf~~~~~ 89 (103)
||++||+|+.-.. ....++.||.+...-.+-
T Consensus 222 tL~~GdvI~TGT~~g~~~l~~GD~v~~~i~gl 253 (270)
T 2wqt_A 222 PLRTGDIILTGALGPMVAVNAGDRFEAHIEGI 253 (270)
T ss_dssp CBCTTCEEEEEESSCCEECCTTCEEEEEETTT
T ss_pred CcCCCCEEEcCCCCCCeeCCCCCEEEEEEcCC
Confidence 6999999998763 234689999998887754
No 23
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}
Probab=39.39 E-value=59 Score=23.24 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=27.3
Q ss_pred cccCCCEEEEeec-CCCCCCCCcEEEEEeCCCCcCEEEEEEE
Q psy3466 59 AFHRGDLLFLTNY-QEEPVRVGEIVVFKVEGRDIPIVHRVLK 99 (103)
Q Consensus 59 tl~~gD~v~v~~~-~~~~~~~GDIVvf~~~~~~~~~ikRVi~ 99 (103)
||++||.++.-.. ....++.||.|...-.+-. ..--+|.+
T Consensus 218 tL~pGDvI~TGTp~Gvg~l~~GD~v~~~i~glG-~l~~~v~~ 258 (264)
T 2dfu_A 218 TLEPLDVVLTGTPEGVGALRPGDRLEVAVEGVG-TLFTLIGP 258 (264)
T ss_dssp CBCTTCEEECCCCSCCCBCCTTCEEEEEETTTE-EEEEEEEE
T ss_pred CcCCCCEEEeCCCCCccccCCCCEEEEEEeCcE-EEEEEEEe
Confidence 6899998887652 2346899999999887642 23444443
No 24
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=38.82 E-value=44 Score=22.18 Aligned_cols=24 Identities=4% Similarity=0.153 Sum_probs=15.1
Q ss_pred cCCCEEEEeecCCCCCCCCcEEEEE
Q psy3466 61 HRGDLLFLTNYQEEPVRVGEIVVFK 85 (103)
Q Consensus 61 ~~gD~v~v~~~~~~~~~~GDIVvf~ 85 (103)
.+||.|++... ..+..+|+|+--.
T Consensus 71 ~~GD~VlVe~~-~yd~~KG~Ii~r~ 94 (143)
T 1d7q_A 71 NTSDIILVGLR-DYQDNKADVILKY 94 (143)
T ss_dssp CTTCEEEEECS-SSSSSCCEEEEEE
T ss_pred cCCCEEEEeec-cCCCCeEEEEEEe
Confidence 47788888763 3445667776443
No 25
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=38.78 E-value=20 Score=22.05 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=26.5
Q ss_pred EEEeCCCccccccCCCEEEEeecCCCCCCCCcEEEEEeC
Q psy3466 49 VVVLSGSMEPAFHRGDLLFLTNYQEEPVRVGEIVVFKVE 87 (103)
Q Consensus 49 ~~V~g~SM~Ptl~~gD~v~v~~~~~~~~~~GDIVvf~~~ 87 (103)
+.+..+|...|+-+|..+--. ....++.||+|.+-.+
T Consensus 60 ~~l~D~S~NGt~vng~~l~~~--~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 60 VTLEDTSTSGTVINKLKVVKK--QTCPLQTGDVIYLVYR 96 (116)
T ss_dssp EEEEECSSSCCCCCCCCCCCS--SCCCCCTTCEEEEECC
T ss_pred EEEEECCcCCcEECCEEcCCC--CcEECCCCCEEEEecc
Confidence 445558999999988754321 2367899999999754
No 26
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=38.59 E-value=16 Score=23.74 Aligned_cols=10 Identities=30% Similarity=0.776 Sum_probs=4.8
Q ss_pred ccCCCEEEEe
Q psy3466 60 FHRGDLLFLT 69 (103)
Q Consensus 60 l~~gD~v~v~ 69 (103)
+++||+||..
T Consensus 68 l~pGDLvFf~ 77 (135)
T 2k1g_A 68 LRTGDLVLFR 77 (135)
T ss_dssp CCTTEEEEEE
T ss_pred ccCCcEEEEC
Confidence 4445555543
No 27
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=37.12 E-value=44 Score=20.85 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=24.3
Q ss_pred EEEeCCCccccccCCCEEEEeecCCCCCCCCcEEEEE
Q psy3466 49 VVVLSGSMEPAFHRGDLLFLTNYQEEPVRVGEIVVFK 85 (103)
Q Consensus 49 ~~V~g~SM~Ptl~~gD~v~v~~~~~~~~~~GDIVvf~ 85 (103)
..|..++-+=-..+||.+.+++. +.+.||.|.|.
T Consensus 3 AIi~~gGkQykV~~Gd~i~vekl---~~~~G~~v~~~ 36 (103)
T 3r8s_R 3 AVFQSGGKQHRVSEGQTVRLEKL---DIATGETVEFA 36 (103)
T ss_dssp EEEECSSSEEEEETTCEEEESCC---CSCTTCEEEEC
T ss_pred EEEEECCEEEEEeCCCEEEECCc---CCCCCCEEEEe
Confidence 45566666666778999999885 35778877774
No 28
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=36.35 E-value=33 Score=25.18 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=24.7
Q ss_pred ccccCCCEEEEeec-CCCCCCCCcEEEEEeCCC
Q psy3466 58 PAFHRGDLLFLTNY-QEEPVRVGEIVVFKVEGR 89 (103)
Q Consensus 58 Ptl~~gD~v~v~~~-~~~~~~~GDIVvf~~~~~ 89 (103)
=||++||+++.-.. ....++.||.|...-++-
T Consensus 246 ~tL~pGDvI~TGTP~Gvg~l~~GD~v~v~iegi 278 (288)
T 4dbf_A 246 MTLLPGDVIATGSPAGTEAMVDGDYIEIEIPGI 278 (288)
T ss_dssp SCBCTTCEEECCCCSCCCBCCTTCEEEEEETTT
T ss_pred CCcCCCCEEEcCCCCCCeecCCCCEEEEEECCc
Confidence 37999999988763 235689999999887754
No 29
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=35.61 E-value=43 Score=20.85 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=23.1
Q ss_pred EEEeCCCccccccCCCEEEEeecCCCCCCCCcEEEE
Q psy3466 49 VVVLSGSMEPAFHRGDLLFLTNYQEEPVRVGEIVVF 84 (103)
Q Consensus 49 ~~V~g~SM~Ptl~~gD~v~v~~~~~~~~~~GDIVvf 84 (103)
..|..+.-+=-..+||.+.+++. +.+.||.|.|
T Consensus 3 AIi~~gGkQykV~~Gd~i~vekl---~~~~G~~v~~ 35 (101)
T 3v2d_V 3 AIVKTGGKQYRVEPGLKLRVEKL---DAEPGATVEL 35 (101)
T ss_dssp EEEEETTEEEEECTTCEEEESCC---SCCTTCEEEE
T ss_pred EEEEeCCEEEEEeCCCEEEECCc---CCCCCCEEEE
Confidence 34556666666778999999985 3567776655
No 30
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A
Probab=35.54 E-value=21 Score=24.95 Aligned_cols=31 Identities=16% Similarity=0.415 Sum_probs=22.0
Q ss_pred ccccCCCEEEEeec-CCCCCCCCcEEEEEeCC
Q psy3466 58 PAFHRGDLLFLTNY-QEEPVRVGEIVVFKVEG 88 (103)
Q Consensus 58 Ptl~~gD~v~v~~~-~~~~~~~GDIVvf~~~~ 88 (103)
=||++||+++.-.. ....++.||.|...-++
T Consensus 182 ~tL~pGDvI~TGTp~Gvg~l~~GD~v~~~i~g 213 (221)
T 3s52_A 182 FTLRAGDIVLTGTPQGVGPMQSGDMLKIMLNG 213 (221)
T ss_dssp SCBCTTCEEECCCCSCCEEECTTCEEEEEETT
T ss_pred CCcCCCCEEEeCCCCcceecCCCCEEEEEEeC
Confidence 36888998887653 12357889988877665
No 31
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=35.51 E-value=28 Score=23.72 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=19.2
Q ss_pred eCCCccccccCCCEEEEeecCCCCCCCCcEEE
Q psy3466 52 LSGSMEPAFHRGDLLFLTNYQEEPVRVGEIVV 83 (103)
Q Consensus 52 ~g~SM~Ptl~~gD~v~v~~~~~~~~~~GDIVv 83 (103)
+|.| +=+++.||.|+++.-+..++-.+-+.-
T Consensus 32 ~~~~-~~~i~vGd~VLI~~~D~~~PyVAki~~ 62 (163)
T 4dov_A 32 NDGS-EIHIKVGQFVLIQGEDNKKPYVAKLIE 62 (163)
T ss_dssp TTSC-EEEEETTCEEEECCSSSSCCEEEEEEE
T ss_pred CCCC-CeEEeeCCEEEEeCCcccCChhHHHHH
Confidence 4556 777888888888764434554444443
No 32
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=35.44 E-value=28 Score=22.28 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=7.6
Q ss_pred CCCCCCcEEEEEe
Q psy3466 74 EPVRVGEIVVFKV 86 (103)
Q Consensus 74 ~~~~~GDIVvf~~ 86 (103)
.++++||+|.|+.
T Consensus 66 ~~l~pGDLvff~~ 78 (136)
T 2jyx_A 66 SNLRTGDLVLFRA 78 (136)
T ss_dssp TTCCTTEEEEEEC
T ss_pred HhCCCCCEEEECC
Confidence 4566666666654
No 33
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}
Probab=33.94 E-value=56 Score=22.91 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=23.2
Q ss_pred cccCCCEEEEeec-CCCCCCCCcEEEEEeCCC
Q psy3466 59 AFHRGDLLFLTNY-QEEPVRVGEIVVFKVEGR 89 (103)
Q Consensus 59 tl~~gD~v~v~~~-~~~~~~~GDIVvf~~~~~ 89 (103)
||++||.++.-.. ....++.||.|...-.+-
T Consensus 204 tL~pGDvI~TGTp~gvg~l~~GD~v~~~i~gl 235 (246)
T 1wzo_A 204 TLEPYDVLLTGTPKGISQVRPGDVMRLEIEGL 235 (246)
T ss_dssp CBCTTCEEECCCCCCSCEECTTCEEEEEETTS
T ss_pred CcCCCCEEEeCCCCCceECCCCCEEEEEEcCc
Confidence 7899998887653 224589999998887764
No 34
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=33.48 E-value=51 Score=16.78 Aligned_cols=20 Identities=10% Similarity=0.536 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3466 21 VLSFGMIVSSALMIWKGLMV 40 (103)
Q Consensus 21 i~~i~~~~~i~~li~~~~~~ 40 (103)
+..+.++++++.++|++++.
T Consensus 8 ivalivalIiaIVVWtiv~i 27 (36)
T 1pi7_A 8 IVALVVAIIIAIVVWSIVII 27 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777877653
No 35
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=33.43 E-value=13 Score=23.19 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=9.0
Q ss_pred cccCCCEEEEeecC
Q psy3466 59 AFHRGDLLFLTNYQ 72 (103)
Q Consensus 59 tl~~gD~v~v~~~~ 72 (103)
..+.||.|++.+|.
T Consensus 61 ~VkvGD~Vlf~ky~ 74 (99)
T 1p3h_A 61 DVAEGDTVIYSKYG 74 (99)
T ss_dssp SCCTTCEEEEECTT
T ss_pred ccCCCCEEEECCcC
Confidence 46667777766654
No 36
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=33.21 E-value=54 Score=23.63 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=23.5
Q ss_pred cccCCCEEEEeec-CCCCCCCCcEEEEEeCCC
Q psy3466 59 AFHRGDLLFLTNY-QEEPVRVGEIVVFKVEGR 89 (103)
Q Consensus 59 tl~~gD~v~v~~~-~~~~~~~GDIVvf~~~~~ 89 (103)
||++||+++.-.. ....++.||.|...-++-
T Consensus 222 tL~pGDvI~TGTp~Gvg~l~~GD~v~v~i~gi 253 (265)
T 3rr6_A 222 TLLPGDVILTGTPEGVGPIVDGDTVSVTIEGI 253 (265)
T ss_dssp CBCTTCEEECCCCSCCEECCTTCEEEEEETTT
T ss_pred CcCCCCEEEeCCCCCceeCCCCCEEEEEECCc
Confidence 7899999987653 224589999998887754
No 37
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=33.05 E-value=54 Score=20.47 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=20.5
Q ss_pred ccCCCEEEEeecC-------CCCCCCCcEEEEEeC
Q psy3466 60 FHRGDLLFLTNYQ-------EEPVRVGEIVVFKVE 87 (103)
Q Consensus 60 l~~gD~v~v~~~~-------~~~~~~GDIVvf~~~ 87 (103)
+++|=.|++|..+ ...++.||.|+|-++
T Consensus 64 lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fist 98 (110)
T 2k9x_A 64 LRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIST 98 (110)
T ss_dssp BCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEEC
T ss_pred cCCCeEEEECCeeeeccCCcccCCCCcCEEEEeCC
Confidence 5555578887632 367999999999776
No 38
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=32.23 E-value=12 Score=23.41 Aligned_cols=18 Identities=17% Similarity=0.538 Sum_probs=11.4
Q ss_pred cccCCCEEEEeecCCCCC
Q psy3466 59 AFHRGDLLFLTNYQEEPV 76 (103)
Q Consensus 59 tl~~gD~v~v~~~~~~~~ 76 (103)
..+.||.|++.+|...++
T Consensus 63 ~VkvGD~Vlf~ky~Gtev 80 (100)
T 1we3_O 63 EVKEGDIVVFAKYGGTEI 80 (100)
T ss_dssp SCCTTCEEEECTTCSEEE
T ss_pred ecCCCCEEEECCCCCeEE
Confidence 567777777777643333
No 39
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=32.21 E-value=49 Score=21.59 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=14.0
Q ss_pred CCCCCCcEEEEEeCCC
Q psy3466 74 EPVRVGEIVVFKVEGR 89 (103)
Q Consensus 74 ~~~~~GDIVvf~~~~~ 89 (103)
.+++.||+++|+.-+.
T Consensus 115 n~L~~GD~cvFeli~~ 130 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRT 130 (146)
T ss_dssp TTCCTTCEEEEEECSS
T ss_pred cCCCCCCEEEEEEecC
Confidence 7899999999988764
No 40
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=32.01 E-value=41 Score=21.16 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=16.9
Q ss_pred CCCCCCCcEEEEEeCCCCcCEEEEEEE
Q psy3466 73 EEPVRVGEIVVFKVEGRDIPIVHRVLK 99 (103)
Q Consensus 73 ~~~~~~GDIVvf~~~~~~~~~ikRVi~ 99 (103)
...|++||.|++... .+.++|---
T Consensus 61 gYrP~r~D~Vv~~Gk---~y~Vtr~~~ 84 (102)
T 2pp6_A 61 NVIPRRGDRVVLRGS---EFTVTRIRR 84 (102)
T ss_dssp SCCCCTTCEEEETTE---EEEEEEEEE
T ss_pred CcccCCCCEEEEcCc---EEEEEEEEE
Confidence 368999999999532 457777543
No 41
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=32.01 E-value=25 Score=20.40 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=11.1
Q ss_pred CccccccCCCEEEEe
Q psy3466 55 SMEPAFHRGDLLFLT 69 (103)
Q Consensus 55 SM~Ptl~~gD~v~v~ 69 (103)
-|-|.++.||.+++.
T Consensus 2 ~~~~~~~vGd~vmAr 16 (67)
T 3p8d_A 2 HMSSEFQINEQVLAC 16 (67)
T ss_dssp ---CCCCTTCEEEEE
T ss_pred CcCcccccCCEEEEE
Confidence 588999999999985
No 42
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.57 E-value=36 Score=20.63 Aligned_cols=44 Identities=27% Similarity=0.227 Sum_probs=28.7
Q ss_pred CCCccccccCCCEEEEeec---CCCCCCCCcEEEEEeCC-CCcCEEEE
Q psy3466 53 SGSMEPAFHRGDLLFLTNY---QEEPVRVGEIVVFKVEG-RDIPIVHR 96 (103)
Q Consensus 53 g~SM~Ptl~~gD~v~v~~~---~~~~~~~GDIVvf~~~~-~~~~~ikR 96 (103)
++|=.|.+..|+.|++..- .........|+-.+..+ ...+|||.
T Consensus 3 ~~~~~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY 50 (87)
T 2eko_A 3 SGSSGGEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHY 50 (87)
T ss_dssp CCCSSCSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEE
T ss_pred cccccccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEe
Confidence 4577789999999999752 12344555666665432 24678885
No 43
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=31.44 E-value=45 Score=21.14 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=11.3
Q ss_pred CCCCCCCcEEEEEe
Q psy3466 73 EEPVRVGEIVVFKV 86 (103)
Q Consensus 73 ~~~~~~GDIVvf~~ 86 (103)
++.++.||.++|+.
T Consensus 32 ~~~i~vGD~I~f~~ 45 (113)
T 1xne_A 32 LKDIKRGDKIIFND 45 (113)
T ss_dssp TTTCCTTCEEEETT
T ss_pred hhccCCCCEEEEcc
Confidence 35789999999954
No 44
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A
Probab=31.34 E-value=22 Score=25.37 Aligned_cols=30 Identities=13% Similarity=0.367 Sum_probs=21.7
Q ss_pred cccCCCEEEEeec-CCCCCCCCcEEEEEeCC
Q psy3466 59 AFHRGDLLFLTNY-QEEPVRVGEIVVFKVEG 88 (103)
Q Consensus 59 tl~~gD~v~v~~~-~~~~~~~GDIVvf~~~~ 88 (103)
||++||+|+.-.. ....++.||.+...-.+
T Consensus 228 tL~~GDvI~TGT~~g~~~l~~GD~v~~~i~g 258 (267)
T 2eb4_A 228 QLEAGQIILGGSFTRPVPARKGDTFHVDYGN 258 (267)
T ss_dssp CBCTTCEEECCCSSCCEECCTTCEEEEECGG
T ss_pred CCCCCCEEECCCCCCCEECCCCCEEEEEEcC
Confidence 6888998887653 23457889988877654
No 45
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=30.91 E-value=33 Score=21.97 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=25.8
Q ss_pred EEEeCCCccccccCCCEEEEeecCCCCCCCCcEEEE
Q psy3466 49 VVVLSGSMEPAFHRGDLLFLTNYQEEPVRVGEIVVF 84 (103)
Q Consensus 49 ~~V~g~SM~Ptl~~gD~v~v~~~~~~~~~~GDIVvf 84 (103)
+...-+|...|+-+|..+-+.+-....++.||+|.|
T Consensus 81 ~l~Dl~S~NGT~vNg~~i~l~~~~~~~L~~GD~I~l 116 (132)
T 3va4_A 81 ILQDCGSLNGTQIVKPPRVLPPGVSHRLRDQELILF 116 (132)
T ss_dssp EEEECSCSSCEEETTTTEEECTTCCEECCTTCEEEE
T ss_pred EEEECCCCCCeEECCEEcccCCCCEEECCCCCEEEE
Confidence 344446889999999886454433356899999987
No 46
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=30.31 E-value=12 Score=23.19 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=8.0
Q ss_pred cccCCCEEEEeecC
Q psy3466 59 AFHRGDLLFLTNYQ 72 (103)
Q Consensus 59 tl~~gD~v~v~~~~ 72 (103)
..+.||.|++.+|.
T Consensus 58 ~VkvGD~Vl~~ky~ 71 (95)
T 3nx6_A 58 VVKVGDKVIYGQYA 71 (95)
T ss_dssp SCCTTCEEEECTTC
T ss_pred ccCCCCEEEECCcC
Confidence 45566666665543
No 47
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=29.97 E-value=30 Score=24.23 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=21.5
Q ss_pred ccccCCCEEEEeec-CCCCCCCCcEEEEEeC
Q psy3466 58 PAFHRGDLLFLTNY-QEEPVRVGEIVVFKVE 87 (103)
Q Consensus 58 Ptl~~gD~v~v~~~-~~~~~~~GDIVvf~~~ 87 (103)
=||++||+++.-.. ....++.||.|...-+
T Consensus 180 ~tL~pGDvI~TGTp~Gvg~l~~GD~v~~~i~ 210 (224)
T 3l53_A 180 FSLQPGDVILTGTPAGVGPLEVGDSLSAKLS 210 (224)
T ss_dssp SCBCTTCEEECCCCSCCEECCTTCEEEEEEE
T ss_pred CCcCCCCEEEcCCCCCCEEcCCCCEEEEEEE
Confidence 36888998887653 2235889999887665
No 48
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=29.87 E-value=59 Score=21.08 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=22.9
Q ss_pred CCccccccCCCEEEEeecCCCCCC----CCcEEEE-EeCC
Q psy3466 54 GSMEPAFHRGDLLFLTNYQEEPVR----VGEIVVF-KVEG 88 (103)
Q Consensus 54 ~SM~Ptl~~gD~v~v~~~~~~~~~----~GDIVvf-~~~~ 88 (103)
.+|+|.+.+|+.++..-.....+. .++...| +.++
T Consensus 2 ~~m~l~l~~~~y~~~~l~~~~~~~~~~~~~~f~~is~t~e 41 (134)
T 1zhv_A 2 PRIKLKILNGSYGIARLSASEAIPAWADGGGFVSITRTDD 41 (134)
T ss_dssp CCCEEEECSSCEEEEEECTTCCCCTTTSSSSCCEEEECSS
T ss_pred CCcceEECCCCEEEEEecCcccCcchhcCCCEEEEEEcCC
Confidence 589999999999999753222221 2356666 5554
No 49
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1
Probab=28.69 E-value=51 Score=22.84 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=21.6
Q ss_pred cccCCCEEEEeecC-CCCCCCCcEEEEEeCCC
Q psy3466 59 AFHRGDLLFLTNYQ-EEPVRVGEIVVFKVEGR 89 (103)
Q Consensus 59 tl~~gD~v~v~~~~-~~~~~~GDIVvf~~~~~ 89 (103)
||++||+++.-... ...++.||.+...-++-
T Consensus 182 tL~~GDvI~TGTp~Gvg~l~~Gd~v~~~i~gl 213 (225)
T 1saw_A 182 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGL 213 (225)
T ss_dssp CBCTTCEEECCCCSCCEEECTTCEEEEEETTT
T ss_pred CcCCCCEEEcCCCCCceeCCCCCEEEEEECCc
Confidence 68888988765531 23478899888877654
No 50
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=28.67 E-value=18 Score=22.49 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=6.3
Q ss_pred cccCCCEEEEee
Q psy3466 59 AFHRGDLLFLTN 70 (103)
Q Consensus 59 tl~~gD~v~v~~ 70 (103)
..+.||.|++.+
T Consensus 58 ~VkvGD~Vlf~k 69 (97)
T 1pcq_O 58 DVKVGDIVIFND 69 (97)
T ss_dssp SCCTTCEEEECC
T ss_pred ccCCCCEEEECC
Confidence 345555555555
No 51
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=28.61 E-value=34 Score=23.22 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=14.9
Q ss_pred CCCccccccCCCEEEEee
Q psy3466 53 SGSMEPAFHRGDLLFLTN 70 (103)
Q Consensus 53 g~SM~Ptl~~gD~v~v~~ 70 (103)
+..|.|.|+.||+|.+.-
T Consensus 45 ~k~~r~~l~~GDlV~ArV 62 (175)
T 2ja9_A 45 SKKNRPTLQVGDLVYARV 62 (175)
T ss_dssp CSSSCCCCCTTCEEEEEE
T ss_pred hhhhhccCCCCCEEEEEE
Confidence 357999999999998754
No 52
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=28.48 E-value=58 Score=22.44 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=26.5
Q ss_pred Cccc-cccCCCEEEEeecCCCCCCCCcEEEEEeCCCCcCEEEEEE
Q psy3466 55 SMEP-AFHRGDLLFLTNYQEEPVRVGEIVVFKVEGRDIPIVHRVL 98 (103)
Q Consensus 55 SM~P-tl~~gD~v~v~~~~~~~~~~GDIVvf~~~~~~~~~ikRVi 98 (103)
++.| +|.+|-.|-+-. -++.||.|..+..... |+.|+-
T Consensus 152 ~~KpA~letG~~v~VP~----fi~~Gd~I~VdT~~g~--Y~~R~k 190 (191)
T 3oyy_A 152 VMKTARLNNGAELQVSA----FCEIGDSIEIDTRTGE--YKSRVK 190 (191)
T ss_dssp CEEEEEETTSCEEEEET----TCCTTCEEEEETTTTE--EEEEC-
T ss_pred CCceEEEeCCCEEEeCC----eeeCCCEEEEECCCCe--Ehhhcc
Confidence 5665 456777776643 3889999999866544 999974
No 53
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=28.37 E-value=46 Score=24.85 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=18.9
Q ss_pred ccCCCEEEEeecCCCCCCCCcEEEEEeCC
Q psy3466 60 FHRGDLLFLTNYQEEPVRVGEIVVFKVEG 88 (103)
Q Consensus 60 l~~gD~v~v~~~~~~~~~~GDIVvf~~~~ 88 (103)
=..||.+..+... .+++.||.++|..-+
T Consensus 346 C~s~D~l~~d~~l-p~~~~GD~l~~~~~G 373 (428)
T 2j66_A 346 CTPEDCLGKDVHV-PALYPGDLVCVLNSG 373 (428)
T ss_dssp SSTTCEEEEEEEE-SCCCTTCEEEESSCS
T ss_pred CCCCcEEEecccC-CCCCCCCEEEEeCCC
Confidence 3466777766532 378999999997543
No 54
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=27.74 E-value=84 Score=21.30 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=22.5
Q ss_pred CCCCCCcEEEEEeCCCCcCEEEEEEEe
Q psy3466 74 EPVRVGEIVVFKVEGRDIPIVHRVLKL 100 (103)
Q Consensus 74 ~~~~~GDIVvf~~~~~~~~~ikRVi~~ 100 (103)
..++.||-|+.+..+.++.||.|+..+
T Consensus 37 ~~i~vGd~VLI~~~D~~~PyVAki~~l 63 (163)
T 4dov_A 37 IHIKVGQFVLIQGEDNKKPYVAKLIEL 63 (163)
T ss_dssp EEEETTCEEEECCSSSSCCEEEEEEEE
T ss_pred eEEeeCCEEEEeCCcccCChhHHHHHH
Confidence 457899999998777667899999886
No 55
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=27.16 E-value=48 Score=24.43 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=19.7
Q ss_pred ccccCCCEEEEeecCCCCCCCCcEEEEEeCC
Q psy3466 58 PAFHRGDLLFLTNYQEEPVRVGEIVVFKVEG 88 (103)
Q Consensus 58 Ptl~~gD~v~v~~~~~~~~~~GDIVvf~~~~ 88 (103)
|+=..||.+.-+. ...+++.||.++|.+-|
T Consensus 293 p~C~s~D~l~~~~-~~~~l~~GD~l~~~~~G 322 (365)
T 3mt1_A 293 KSCLAGDVFGEFR-FAEELKVGDRISFQDAA 322 (365)
T ss_dssp SSCCSSCEEEEEE-ESSCCCTTCEEEESSCC
T ss_pred CCCCccCEEcccc-cCCCCCCCCEEEEeccc
Confidence 3456678775333 23578999999997644
No 56
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A
Probab=27.15 E-value=1.1e+02 Score=22.12 Aligned_cols=39 Identities=13% Similarity=0.237 Sum_probs=25.4
Q ss_pred cccCCCEEEEee---c-CCCCCCCCcEEEEEeCCCCcCEEEEEE
Q psy3466 59 AFHRGDLLFLTN---Y-QEEPVRVGEIVVFKVEGRDIPIVHRVL 98 (103)
Q Consensus 59 tl~~gD~v~v~~---~-~~~~~~~GDIVvf~~~~~~~~~ikRVi 98 (103)
||++||.++.-. . ....++.||+|...-++-. ...-+|.
T Consensus 245 tL~pGDvI~TGTg~~p~~~~~l~~GD~v~~~i~glG-~l~n~v~ 287 (293)
T 2q18_X 245 PIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIG-TLITPVK 287 (293)
T ss_dssp CCCTTEEEECCCSCCCCTTCCCCTTCEEEEEETTTE-EEEEEEE
T ss_pred CCCCCCEEECCCCCCCCCCcccCCCCEEEEEEcCcE-EEEEEEE
Confidence 688888887654 2 1246889999988877542 2334444
No 57
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=26.91 E-value=64 Score=22.00 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=27.2
Q ss_pred CCCccc-cccCCCEEEEeecCCCCCCCCcEEEEEeCCCCcCEEEEE
Q psy3466 53 SGSMEP-AFHRGDLLFLTNYQEEPVRVGEIVVFKVEGRDIPIVHRV 97 (103)
Q Consensus 53 g~SM~P-tl~~gD~v~v~~~~~~~~~~GDIVvf~~~~~~~~~ikRV 97 (103)
++++.| ||.+|-.|-+-. -++.||.|..+..... |+.|+
T Consensus 145 ~~~~KpA~letG~~v~VP~----fi~~Gd~I~vdT~~g~--Y~~R~ 184 (184)
T 1ueb_A 145 SGGSKPATLETGAVVQVPL----FVEPGEVIKVDTRTGE--YVGRA 184 (184)
T ss_dssp SCSEEEEEETTSCEEEEET----TCCTTCEEEEETTTTE--EEEEC
T ss_pred CCCCccEEEcCCCEEEeCC----cCcCCCEEEEECCCCe--EeccC
Confidence 445666 456777776643 3889999999766544 99885
No 58
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=26.85 E-value=63 Score=22.73 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=27.0
Q ss_pred CCCccc-cccCCCEEEEeecCCCCCCCCcEEEEEeCCCCcCEEEEE
Q psy3466 53 SGSMEP-AFHRGDLLFLTNYQEEPVRVGEIVVFKVEGRDIPIVHRV 97 (103)
Q Consensus 53 g~SM~P-tl~~gD~v~v~~~~~~~~~~GDIVvf~~~~~~~~~ikRV 97 (103)
+++..| ||.+|-.|-|-. -++.||.|..+..... |+.|+
T Consensus 176 ~~~~KpA~leTG~~v~VP~----FI~~Gd~I~VdT~~g~--Y~~R~ 215 (215)
T 1yby_A 176 TGATKPAIVETGASIKVPL----FVNKGDIIRIDTRTGE--YMERV 215 (215)
T ss_dssp SCCEEEEEETTSCEEEEET----TCCTTCEEEEETTTTE--EEEEC
T ss_pred CCCCccEEEeCCcEEEeCC----cEeCCCEEEEECCCCe--EeccC
Confidence 345555 456777777643 3889999999766544 99985
No 59
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=26.71 E-value=62 Score=20.50 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=13.3
Q ss_pred CCCCCCCcEEEEEeCC
Q psy3466 73 EEPVRVGEIVVFKVEG 88 (103)
Q Consensus 73 ~~~~~~GDIVvf~~~~ 88 (103)
..+++.||+++|....
T Consensus 89 ~~~L~~GD~~~F~~~~ 104 (130)
T 1wid_A 89 EKNLRAGDVVSFSRSN 104 (130)
T ss_dssp HTTCCTTCEEEEEECC
T ss_pred HcCCCCCCEEEEEEec
Confidence 3689999999998764
No 60
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=25.65 E-value=55 Score=18.43 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhH
Q psy3466 2 IQDAINDLKRLNK 14 (103)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (103)
+++..+++|+..+
T Consensus 8 ~~~v~~ElkKV~W 20 (65)
T 3dl8_C 8 LKGVRDELKRVVW 20 (65)
T ss_dssp -------------
T ss_pred HHHHHHHHhcccC
Confidence 3566777888444
No 61
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=25.47 E-value=39 Score=22.09 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=21.2
Q ss_pred EEEeCCCccccccCCCEEEEeecCCCCCCCCcEEEE
Q psy3466 49 VVVLSGSMEPAFHRGDLLFLTNYQEEPVRVGEIVVF 84 (103)
Q Consensus 49 ~~V~g~SM~Ptl~~gD~v~v~~~~~~~~~~GDIVvf 84 (103)
+.+.-.|-..|+-||..| .. ...++.||.|.|
T Consensus 102 ~~~d~~S~ngt~VNG~~i--~~--~~~L~~GD~I~~ 133 (154)
T 4ejq_A 102 VTLEPCEGADTYVNGKKV--TE--PSILRSGNRIIM 133 (154)
T ss_dssp EEEEECTTCCEEETTEEC--CS--CEECCTTCEEEE
T ss_pred EEEecCCCCceEECCEEc--CC--ceECCCCCEEEE
Confidence 444555666777777665 21 246899999988
No 62
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=25.17 E-value=60 Score=18.44 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=9.7
Q ss_pred CCCCCCcEEEEEeC
Q psy3466 74 EPVRVGEIVVFKVE 87 (103)
Q Consensus 74 ~~~~~GDIVvf~~~ 87 (103)
-.+.+||.|.+...
T Consensus 45 i~i~~GD~V~ve~~ 58 (71)
T 1hr0_W 45 IRILPGDRVVVEIT 58 (71)
T ss_dssp CCCCTTCEEEEECC
T ss_pred cCCCCCCEEEEEEE
Confidence 45668888888643
No 63
>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...
Probab=24.81 E-value=29 Score=21.60 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=23.4
Q ss_pred EEeCCCccccccCCCEEEEeecCCCCCCCCcEEEEE
Q psy3466 50 VVLSGSMEPAFHRGDLLFLTNYQEEPVRVGEIVVFK 85 (103)
Q Consensus 50 ~V~g~SM~Ptl~~gD~v~v~~~~~~~~~~GDIVvf~ 85 (103)
.|..++-+=-..+||.+.+++. +.+.||.|.|+
T Consensus 4 Ii~~gGkQykV~~Gd~i~vekl---~~~~G~~v~~~ 36 (100)
T 2zjr_O 4 IIQTGGKQYRVSEGDVIRVESL---QGEAGDKVELK 36 (100)
T ss_dssp -CCSSCCSCCSCCEEEEECCSC---CSSCCEEEECC
T ss_pred EEEECCEEEEEeCCCEEEEccc---CCCCCCEEEEE
Confidence 4555666666788999999885 24678888774
No 64
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=24.53 E-value=55 Score=24.81 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=20.0
Q ss_pred ccccCCCEEEEeecCCCCCCCCcEEEEEeCC
Q psy3466 58 PAFHRGDLLFLTNYQEEPVRVGEIVVFKVEG 88 (103)
Q Consensus 58 Ptl~~gD~v~v~~~~~~~~~~GDIVvf~~~~ 88 (103)
|+=..||.+.-.+ ...+++.||.++|.+-|
T Consensus 347 p~C~s~D~l~~~~-~~~~l~~GD~l~~~~~G 376 (418)
T 3n29_A 347 NTCLAGDVMGEYA-FDKKLKIGDKIVFLDQI 376 (418)
T ss_dssp SSSCTTCEEEEEE-ESSCCCTTCEEEESSCS
T ss_pred CCCCCCCEEeecc-cCCCCCCCCEEEEeCcc
Confidence 4556778775333 23568999999997644
No 65
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} SCOP: c.56.2.0
Probab=24.40 E-value=28 Score=25.40 Aligned_cols=21 Identities=19% Similarity=0.665 Sum_probs=17.5
Q ss_pred EEeCCCccccccCCCEEEEee
Q psy3466 50 VVLSGSMEPAFHRGDLLFLTN 70 (103)
Q Consensus 50 ~V~g~SM~Ptl~~gD~v~v~~ 70 (103)
+=..+|+.|.+++||+|+.+.
T Consensus 111 tgaaGgl~~~~~~GDlVi~~d 131 (285)
T 3khs_A 111 TNAAGGLNPSYRPGDFMVVRD 131 (285)
T ss_dssp EEEEEECSTTCCTTCEEEEEE
T ss_pred ecceecCCCCCCCCCEEeehh
Confidence 334569999999999999986
No 66
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} SCOP: c.56.2.1 PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ...
Probab=24.29 E-value=28 Score=25.40 Aligned_cols=20 Identities=25% Similarity=0.747 Sum_probs=17.1
Q ss_pred EeCCCccccccCCCEEEEee
Q psy3466 51 VLSGSMEPAFHRGDLLFLTN 70 (103)
Q Consensus 51 V~g~SM~Ptl~~gD~v~v~~ 70 (103)
=..+|+.|.+++||+++.+.
T Consensus 115 gaaGgl~~~~~~GDlVi~~d 134 (284)
T 3fuc_A 115 NAAGGLNPNFEVGDIMLIRD 134 (284)
T ss_dssp EEEEECSTTCCTTCEEEEEE
T ss_pred cceecCCCCCCCCCEEEehH
Confidence 33469999999999999876
No 67
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=24.06 E-value=43 Score=20.90 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=11.4
Q ss_pred CCCCCCcEEEEEeCCC
Q psy3466 74 EPVRVGEIVVFKVEGR 89 (103)
Q Consensus 74 ~~~~~GDIVvf~~~~~ 89 (103)
.+|++||+|.+.....
T Consensus 6 ~ep~pGDlI~~~r~~Y 21 (125)
T 2lkt_A 6 QEPKPGDLIEIFRLGY 21 (125)
T ss_dssp CCCCTTCEEEEECSSS
T ss_pred CCCCCCCEEEEeCCCc
Confidence 5788888887766554
No 68
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A
Probab=24.01 E-value=29 Score=25.01 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=17.8
Q ss_pred EEeCCCccccccCCCEEEEee
Q psy3466 50 VVLSGSMEPAFHRGDLLFLTN 70 (103)
Q Consensus 50 ~V~g~SM~Ptl~~gD~v~v~~ 70 (103)
+=.-+|+.|.+++||+|+.+.
T Consensus 117 tgaaG~l~~~l~~GDlVi~~d 137 (266)
T 1qe5_A 117 TNGCGGLNQEWGAGTPVLLSD 137 (266)
T ss_dssp EEEEEECCTTSCTTCEEEEEE
T ss_pred ecceecCCCCCCCCCEEEEhH
Confidence 334569999999999999987
No 69
>2lqk_A Transcriptional regulator; RNA polymerase interacting domain, transcription regulator; NMR {Thermus thermophilus}
Probab=29.77 E-value=16 Score=21.04 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=8.1
Q ss_pred CccccccCCCEEEEee
Q psy3466 55 SMEPAFHRGDLLFLTN 70 (103)
Q Consensus 55 SM~Ptl~~gD~v~v~~ 70 (103)
||. .|+.||.|+.-.
T Consensus 3 ~m~-~f~~GD~VVy~~ 17 (70)
T 2lqk_A 3 HMK-EFRPGDKVVLPP 17 (70)
Confidence 444 466666665543
No 70
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=23.81 E-value=66 Score=20.92 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=9.5
Q ss_pred CCCCCCcEEEEEeCC
Q psy3466 74 EPVRVGEIVVFKVEG 88 (103)
Q Consensus 74 ~~~~~GDIVvf~~~~ 88 (103)
+..+.||-++|++++
T Consensus 33 r~mk~GD~~~fYhs~ 47 (145)
T 2hd9_A 33 SRVKPGDKLVIYVRQ 47 (145)
T ss_dssp TTCCTTCEEEEEECC
T ss_pred HhCCCCCEEEEEEcc
Confidence 456677777776653
No 71
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=23.80 E-value=58 Score=20.46 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=15.0
Q ss_pred CCCCCCcEEEEEeCCCCcCEEEEEEEe
Q psy3466 74 EPVRVGEIVVFKVEGRDIPIVHRVLKL 100 (103)
Q Consensus 74 ~~~~~GDIVvf~~~~~~~~~ikRVi~~ 100 (103)
..++.||.++|. + ....-+|+.+
T Consensus 32 ~~ikvGD~I~f~--~--~~l~~~V~~v 54 (109)
T 2z0t_A 32 RQIKPGDIIIFE--G--GKLKVKVKGI 54 (109)
T ss_dssp GGCCTTCEEEEG--G--GTEEEEEEEE
T ss_pred hcCCCCCEEEEC--C--CEEEEEEEEE
Confidence 568999999992 2 2355555544
No 72
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A*
Probab=23.51 E-value=30 Score=24.95 Aligned_cols=20 Identities=10% Similarity=0.411 Sum_probs=17.4
Q ss_pred EeCCCccccccCCCEEEEee
Q psy3466 51 VLSGSMEPAFHRGDLLFLTN 70 (103)
Q Consensus 51 V~g~SM~Ptl~~gD~v~v~~ 70 (103)
=..+|+.|.+++||+|+.+.
T Consensus 119 gaaG~l~~~l~~GDlVi~~d 138 (268)
T 1g2o_A 119 NAAGGLRADLQVGQPVLISD 138 (268)
T ss_dssp EEEEECSTTCCTTCEEEEEE
T ss_pred cceecCCCCCCCCCEEEEhH
Confidence 33469999999999999987
No 73
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=23.25 E-value=70 Score=23.91 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=19.7
Q ss_pred cccCCCEEEEeecCCCCCCCCcEEEEEeCC
Q psy3466 59 AFHRGDLLFLTNYQEEPVRVGEIVVFKVEG 88 (103)
Q Consensus 59 tl~~gD~v~v~~~~~~~~~~GDIVvf~~~~ 88 (103)
+=..||.+..+.. ..+++.||.++|...+
T Consensus 348 ~C~s~D~~~~d~~-lp~~~~GD~v~~~~~G 376 (425)
T 2qgh_A 348 VCESSDTFLKDAH-LPELEPGDKIAIEKVG 376 (425)
T ss_dssp SSSTTCEEEEEEE-ECCCCTTCEEEECSCS
T ss_pred CcCCCcEeccccc-CCCCCCCCEEEEeCCC
Confidence 3456788877652 2378899999995443
No 74
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=22.89 E-value=73 Score=24.31 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=23.7
Q ss_pred cccCCCEEEEeec-CCCCCCCCcEEEEEeCCC
Q psy3466 59 AFHRGDLLFLTNY-QEEPVRVGEIVVFKVEGR 89 (103)
Q Consensus 59 tl~~gD~v~v~~~-~~~~~~~GDIVvf~~~~~ 89 (103)
||++||.++.-.. ....++.||.|...-.+-
T Consensus 384 tL~~GDvI~TGTp~gvg~l~~GD~v~~~i~gl 415 (429)
T 1gtt_A 384 TLNPGDMIATGTPKGLSDVVPGDEVVVEVEGV 415 (429)
T ss_dssp CBCTTCEEECCCCSCCCBCCTTCEEEEEETTT
T ss_pred CcCCCCEEEcCCCCCCeECCCCCEEEEEEcCc
Confidence 6899998887652 234689999999988764
No 75
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1
Probab=22.77 E-value=31 Score=25.04 Aligned_cols=21 Identities=19% Similarity=0.695 Sum_probs=17.8
Q ss_pred EEeCCCccccccCCCEEEEee
Q psy3466 50 VVLSGSMEPAFHRGDLLFLTN 70 (103)
Q Consensus 50 ~V~g~SM~Ptl~~gD~v~v~~ 70 (103)
+=..+|+.|.+++||+++.+.
T Consensus 121 tgaaG~l~~~l~~GDlVi~~d 141 (277)
T 1vmk_A 121 TNAAGAINPEFKPGEIILVRD 141 (277)
T ss_dssp EEEEEECSTTCCTTCEEEEEE
T ss_pred ecceecCCCCCCCCCEEEEhH
Confidence 334469999999999999987
No 76
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=22.53 E-value=1.2e+02 Score=22.28 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=17.5
Q ss_pred CEEEEeecCCC-CCCCCcEEEEEeCC
Q psy3466 64 DLLFLTNYQEE-PVRVGEIVVFKVEG 88 (103)
Q Consensus 64 D~v~v~~~~~~-~~~~GDIVvf~~~~ 88 (103)
|.+.++..... +++.||.|++...+
T Consensus 320 D~~~~d~~~~p~~~~~GD~v~l~g~~ 345 (384)
T 1xfc_A 320 DQFMVDLGPGPLDVAEGDEAILFGPG 345 (384)
T ss_dssp SCEEEEEESSSCCCCTTCEEEEECSS
T ss_pred ceEEEEccCCCCCCCCCCEEEEEeCC
Confidence 76666653223 68999999987654
No 77
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=22.42 E-value=74 Score=23.73 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=19.2
Q ss_pred cccCCCEEEEeecCCCCCCCCcEEEEEeCC
Q psy3466 59 AFHRGDLLFLTNYQEEPVRVGEIVVFKVEG 88 (103)
Q Consensus 59 tl~~gD~v~v~~~~~~~~~~GDIVvf~~~~ 88 (103)
+=..||.+..+.. ..+++.||.++|..-+
T Consensus 357 ~C~s~D~~~~d~~-lp~~~~GD~v~~~~~G 385 (434)
T 1twi_A 357 LCESSDVFGRDRE-LDKVEVGDVLAIFDVG 385 (434)
T ss_dssp SSCTTCEEEEEEE-EECCCTTCEEEEECCS
T ss_pred CCCCCCEEeeccC-CCCCCCCCEEEEeCCC
Confidence 3346677777652 2378899999986544
No 78
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A*
Probab=22.24 E-value=32 Score=25.12 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=17.3
Q ss_pred EeCCCccccccCCCEEEEee
Q psy3466 51 VLSGSMEPAFHRGDLLFLTN 70 (103)
Q Consensus 51 V~g~SM~Ptl~~gD~v~v~~ 70 (103)
=..+|+.|.+++||+|+.+.
T Consensus 124 gaaGgl~~~l~~GDlVi~~d 143 (287)
T 3odg_A 124 NAAGSLRPEVLPGSVVMLKD 143 (287)
T ss_dssp EEEEESSTTSCTTCEEEEEE
T ss_pred cceeccCCCCCCCCEEEehh
Confidence 33569999999999999987
No 79
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.19 E-value=1.6e+02 Score=18.81 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=24.8
Q ss_pred eEEEeCCCccccccCCCEEEEee---cCCCCCCCCcEE
Q psy3466 48 IVVVLSGSMEPAFHRGDLLFLTN---YQEEPVRVGEIV 82 (103)
Q Consensus 48 ~~~V~g~SM~Ptl~~gD~v~v~~---~~~~~~~~GDIV 82 (103)
...|.|+|-...-..||.+.+.- .....+++||++
T Consensus 21 cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~ 58 (121)
T 3bbo_M 21 CIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVI 58 (121)
T ss_dssp EEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEE
T ss_pred EEEEcCCCCccccccCcEEEEEEEEccCCCccccCcEE
Confidence 46677877777788999988774 223467788864
No 80
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=21.95 E-value=1.6e+02 Score=18.81 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=24.1
Q ss_pred eEEEeCCCccccccCCCEEEEee---cCCCCCCCCcEE
Q psy3466 48 IVVVLSGSMEPAFHRGDLLFLTN---YQEEPVRVGEIV 82 (103)
Q Consensus 48 ~~~V~g~SM~Ptl~~gD~v~v~~---~~~~~~~~GDIV 82 (103)
...|.|+|=...-..||.+.+.- .....+++||++
T Consensus 21 cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~ 58 (122)
T 3v2d_O 21 CIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVV 58 (122)
T ss_dssp EEEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEE
T ss_pred EEEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEE
Confidence 46677877777788899988764 223456777763
No 81
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=21.59 E-value=64 Score=24.58 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=19.5
Q ss_pred cccCCCEEEEeecCCCCCCCCcEEEEEeCC
Q psy3466 59 AFHRGDLLFLTNYQEEPVRVGEIVVFKVEG 88 (103)
Q Consensus 59 tl~~gD~v~v~~~~~~~~~~GDIVvf~~~~ 88 (103)
+=..||.+..+..-+.+++.||.++|..-+
T Consensus 376 ~C~s~D~~~~d~~lp~~l~~GD~l~~~~~G 405 (467)
T 2o0t_A 376 HCESGDIIVRDTWVPDDIRPGDLVAVAATG 405 (467)
T ss_dssp SSSTTCEEEEEEEEETTCCTTCEEEESCCS
T ss_pred CcCCCCEEEeccccCCCCCCCCEEEEcCCC
Confidence 345667776654212378999999997654
No 82
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=21.07 E-value=55 Score=21.19 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=23.0
Q ss_pred CccccccCCCEEEEeecCCCCCCC--CcEEEEEeCCC
Q psy3466 55 SMEPAFHRGDLLFLTNYQEEPVRV--GEIVVFKVEGR 89 (103)
Q Consensus 55 SM~Ptl~~gD~v~v~~~~~~~~~~--GDIVvf~~~~~ 89 (103)
+|+|.+.+|+.++..-.....+.. +.+-+++.+++
T Consensus 14 ~m~l~l~~~~y~~~~l~~~~~~~~~l~~~~i~~t~ee 50 (133)
T 1zvp_A 14 SMSPELMAGDYVFCTVNGALSDYLSLEPIATFREPEG 50 (133)
T ss_dssp TCEEEECSSCEEEEEECSCGGGGGGGCCSEEEEETTE
T ss_pred cCCEEECCCcEEEEEecCCccCCCCCcceEEEEcCCc
Confidence 799999999999987532212211 23667777653
No 83
>1ybf_A AMP nucleosidase; structural genomics, protein structure initiative, PSI, NEW research center for structural genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron} SCOP: c.56.2.1
Probab=21.01 E-value=54 Score=23.11 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=16.7
Q ss_pred CCCccccccCCCEEEEee
Q psy3466 53 SGSMEPAFHRGDLLFLTN 70 (103)
Q Consensus 53 g~SM~Ptl~~gD~v~v~~ 70 (103)
.+++.|.++.||.|+.+.
T Consensus 97 aGgl~~~i~~GDvVi~~~ 114 (268)
T 1ybf_A 97 CGGLKLENALGDYLLPIA 114 (268)
T ss_dssp ECCSSCTTCTTCEEEEEE
T ss_pred eecCCCCCCCCcEEEEhh
Confidence 589999999999999987
No 84
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}
Probab=20.83 E-value=2e+02 Score=21.64 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=16.5
Q ss_pred CCCCCcEEEEEeCCCC-----cCEEEEEEEe
Q psy3466 75 PVRVGEIVVFKVEGRD-----IPIVHRVLKL 100 (103)
Q Consensus 75 ~~~~GDIVvf~~~~~~-----~~~ikRVi~~ 100 (103)
-++.||.|.....+.+ ...-.||+.-
T Consensus 326 fL~~GD~V~i~~~~~~g~~~~G~l~n~V~~~ 356 (359)
T 3lzk_A 326 FLKFGDVVRIEMKDRTGHSIFGAIEQKVGKY 356 (359)
T ss_dssp CBCTTCEEEEEEBCTTSCBSSCCEEEEEEEC
T ss_pred cCCCCCEEEEEEEcCCCcccccceEEEEEeC
Confidence 3788999988776521 2355566543
No 85
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=20.23 E-value=73 Score=24.05 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=20.1
Q ss_pred ccccCCCEEEEeecCCCCCCCCcEEEEEeCC
Q psy3466 58 PAFHRGDLLFLTNYQEEPVRVGEIVVFKVEG 88 (103)
Q Consensus 58 Ptl~~gD~v~v~~~~~~~~~~GDIVvf~~~~ 88 (103)
|+=..||.+.-+.. ..+++.||.++|..-|
T Consensus 358 p~C~s~D~l~~~~~-Lp~l~~GD~l~~~~~G 387 (424)
T 7odc_A 358 PTCDGLDRIVERCN-LPEMHVGDWMLFENMG 387 (424)
T ss_dssp SSSCTTCEEEEEEE-EECCCTTCEEEECSCC
T ss_pred CCCCCCCEeccccc-CCCCCCCCEEEECCCC
Confidence 44556777664442 2368999999997654
No 86
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=20.04 E-value=90 Score=19.88 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=16.3
Q ss_pred CCCCCCcEEEEEeCCCCcCEEEEEEEec
Q psy3466 74 EPVRVGEIVVFKVEGRDIPIVHRVLKLH 101 (103)
Q Consensus 74 ~~~~~GDIVvf~~~~~~~~~ikRVi~~~ 101 (103)
..++.||+|.+..++. .+.-+|.+++
T Consensus 47 ~~V~~GD~I~I~~~~~--~~~~~v~~~~ 72 (133)
T 1dm9_A 47 KIVELNATLTLRQGND--ERTVIVKAIT 72 (133)
T ss_dssp CBCCTTCEEEEEETTE--EEEEEECEEE
T ss_pred CEeCCCCEEEEEeCCc--eeeEEEcccc
Confidence 4577788888776653 2555565543
No 87
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A*
Probab=20.00 E-value=38 Score=24.59 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=16.5
Q ss_pred CCCccccccCCCEEEEee
Q psy3466 53 SGSMEPAFHRGDLLFLTN 70 (103)
Q Consensus 53 g~SM~Ptl~~gD~v~v~~ 70 (103)
.+|+.|.+++||+++.+.
T Consensus 119 aG~l~~~~~~GDlVi~~d 136 (287)
T 1tcv_A 119 AGGLNRSLKLGDFVILKD 136 (287)
T ss_dssp EEECSTTCCTTCEEEEEE
T ss_pred eeecCCCCCCCCEEEEHH
Confidence 479999999999999986
Done!