RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3466
(103 letters)
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42,
trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP:
b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Length = 645
Score = 29.1 bits (64), Expect = 0.22
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 62 RGDLLFLTNYQEEPVRV 78
RG +F NY E V
Sbjct: 603 RGTWVFAFNYGPEAVEA 619
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase,
signal peptid processing, protein translocation; HET:
1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB:
3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Length = 248
Score = 28.7 bits (64), Expect = 0.23
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 17/64 (26%)
Query: 53 SGSMEPAFHRGDLLFLTNY---------------QEEPVRVGEIVVFKV-EGRDIPIVHR 96
SGSM P GD + + + P R G+IVVFK E + + R
Sbjct: 13 SGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKR-GDIVVFKYPEDPKLDYIKR 71
Query: 97 VLKL 100
+ L
Sbjct: 72 AVGL 75
>3a2z_A Bifunctional glutathionylspermidine synthetase/AM; GSP amidase,
ATP-binding, hydrolase, ligase, multifunctional
nucleotide-binding; 1.50A {Escherichia coli} PDB: 3a30_A
3a2y_A*
Length = 197
Score = 26.1 bits (57), Expect = 2.0
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 65 LLFLTNYQEEPVRVGEIVVFKVEGRDIPIVH 95
L N G ++++ G H
Sbjct: 101 LQAFPNGSPRAPVAGALLIWDKGGEFKDTGH 131
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold,
oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP:
d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A*
1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A*
1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A*
1nse_A* ...
Length = 444
Score = 26.1 bits (57), Expect = 2.5
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 52 LSGSMEPAFHRG-DLLFLT---NYQEEP 75
+SGS+ P FH+ L+ YQ +P
Sbjct: 416 ISGSLTPVFHQEMVNYILSPAFRYQPDP 443
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 2.6
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Query: 7 NDLKRLNKRQFLYQVLSFGMIVSSALMI 34
LK+L LY S + AL I
Sbjct: 20 QALKKLQASLKLYADDS-----APALAI 42
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase,
hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP:
c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A*
2iob_A 3o98_A*
Length = 619
Score = 25.8 bits (56), Expect = 3.6
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 65 LLFLTNYQEEPVRVGEIVVFKVEGRDIPIVH 95
L N G ++++ G H
Sbjct: 101 LQAFPNGSPRAPVAGALLIWDKGGEFKDTGH 131
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase,
hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp}
PDB: 3tts_A*
Length = 675
Score = 25.3 bits (54), Expect = 5.3
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 63 GDLLFLTNYQEEPVRV 78
LF+ N+ E +
Sbjct: 627 TSYLFVMNHNAEEMTF 642
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn
oxidoreductase, oxidoreductase-oxidoreductase inhibitor
COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} PDB:
2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A*
3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A*
3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Length = 422
Score = 24.9 bits (54), Expect = 5.7
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 52 LSGSMEPAFHRG-DLLFLT---NYQEEPVRV 78
+SGS+ P FH+ LT YQ +P
Sbjct: 387 MSGSITPVFHQEMLNYRLTPSFEYQPDPWNT 417
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda
repressor, protein oligomerization, DNA-looping; 2.91A
{Enterobacteria phage lambda} SCOP: b.87.1.1
Length = 109
Score = 24.2 bits (53), Expect = 5.9
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 55 SM------EPAFHRGDLLFLTNYQEEPVRVGEIVVFKVEG 88
SM +P+F G L+ + E+ V G+ + ++ G
Sbjct: 22 SMTAPTGSKPSFPDGMLILVD--PEQAVEPGDFCIARLGG 59
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin,
oxido calmodulin-binding, FAD, FMN, iron, metal-binding,
NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus
musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A*
3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A*
3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A*
1m8h_A* 1m8i_A* 1m9t_A* ...
Length = 433
Score = 24.5 bits (53), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 52 LSGSMEPAFHRGDLLFLTN----YQEEPVRV 78
+SGS+ P FH+ L ++ + YQ EP +
Sbjct: 397 VSGSITPVFHQEMLNYVLSPFYYYQIEPWKT 427
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens}
PDB: 3hve_B
Length = 256
Score = 24.1 bits (53), Expect = 9.6
Identities = 4/16 (25%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 82 VVFKVEGRDIPIVHRV 97
++G +IP V +
Sbjct: 34 AHLVLDGEEIP-VQKN 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.142 0.406
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,541,280
Number of extensions: 81793
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 25
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)