RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3466
         (103 letters)



>d1kwga1 b.71.1.1 (A:591-644) A4 beta-galactosidase {Thermus
          thermophilus [TaxId: 274]}
          Length = 54

 Score = 26.2 bits (58), Expect = 0.25
 Identities = 7/18 (38%), Positives = 8/18 (44%)

Query: 61 HRGDLLFLTNYQEEPVRV 78
           RG  +F  NY  E V  
Sbjct: 12 RRGTWVFAFNYGPEAVEA 29


>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli
          [TaxId: 562]}
          Length = 247

 Score = 27.6 bits (60), Expect = 0.27
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 49 VVVLSGSMEPAFHRGDLLFLTNYQ---EEPVRVGEIVVFKVEGRDIPIVHR 96
            + SGSM P    GD + +  +    ++P+    ++      R   +V +
Sbjct: 8  FQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFK 58


>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 421

 Score = 25.9 bits (57), Expect = 1.2
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 41  LTGSESPIVVVLSGSMEPAFHRGDLLFLTN----YQEEPVRV 78
                  +V  +SGS+ P FH+  L ++ +    YQ EP + 
Sbjct: 375 CPADWIWLVPPVSGSITPVFHQEMLNYVLSPFYYYQIEPWKT 416


>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 418

 Score = 25.5 bits (56), Expect = 1.3
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 41  LTGSESPIVVVLSGSMEPAFHRG-DLLFLT---NYQEEP 75
                  IV  +SGS+ P FH+      LT    YQ +P
Sbjct: 374 CPADWVWIVPPMSGSITPVFHQEMLNYRLTPSFEYQPDP 412


>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 416

 Score = 25.5 bits (56), Expect = 1.6
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)

Query: 48  IVVVLSGSMEPAFHRG-DLLFLT---NYQEEP 75
           IV  +SGS+ P FH+      L+    YQ +P
Sbjct: 384 IVPPISGSLTPVFHQEMVNYILSPAFRYQPDP 415


>d2io8a2 d.3.1.15 (A:10-200) Glutathionylspermidine synthase,
           amidase domain {Escherichia coli [TaxId: 562]}
          Length = 191

 Score = 24.5 bits (53), Expect = 3.0
 Identities = 5/34 (14%), Positives = 9/34 (26%)

Query: 62  RGDLLFLTNYQEEPVRVGEIVVFKVEGRDIPIVH 95
              L    N        G ++++   G      H
Sbjct: 89  ILPLQAFPNGSPRAPVAGALLIWDKGGEFKDTGH 122


>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Bacillus subtilis [TaxId: 1423]}
          Length = 363

 Score = 23.9 bits (52), Expect = 4.1
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 41  LTGSESPIVVVLSGSMEPAFHRGDLLFLTN----YQEEP 75
           LTG  + ++  +S +    FHR     +      YQ++P
Sbjct: 323 LTGDWTWLIPPISPAATHIFHRSYDNSIVKPNYFYQDKP 361


>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 346

 Score = 23.9 bits (52), Expect = 5.4
 Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 4/28 (14%)

Query: 48  IVVVLSGSMEPAFHRGDLLFLTNYQEEP 75
           +   LS ++   +H G      N  ++P
Sbjct: 317 LAPPLSPTLTSNYHHG----YDNTVKDP 340


>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima
           [TaxId: 2336]}
          Length = 225

 Score = 23.2 bits (49), Expect = 8.9
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 64  DLLFLTNYQEE----PVRVGEIVVFKVEGRDIPIVHRVLKLHEK 103
            LL +    E        + E+ V+ V+G      H  L L +K
Sbjct: 181 LLLEIAGNIEIIADYATNIVEVSVYMVQGEAYKCYHDELLLFKK 224


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.142    0.406 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 364,344
Number of extensions: 14646
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 12
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)