Query psy3467
Match_columns 455
No_of_seqs 433 out of 3702
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 17:26:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 6.4E-28 2.2E-32 235.7 22.2 275 8-286 34-321 (451)
2 3o7q_A L-fucose-proton symport 100.0 5.5E-27 1.9E-31 228.2 23.7 261 8-287 32-327 (438)
3 2gfp_A EMRD, multidrug resista 99.9 4E-26 1.4E-30 217.5 15.0 257 7-285 5-265 (375)
4 4gc0_A D-xylose-proton symport 99.9 3.7E-23 1.3E-27 204.3 18.2 275 11-287 21-344 (491)
5 4aps_A DI-OR tripeptide H+ sym 99.9 2.7E-22 9.1E-27 198.1 22.4 256 29-287 46-351 (491)
6 2cfq_A Lactose permease; trans 99.8 8.1E-20 2.8E-24 176.4 11.4 256 17-287 22-291 (417)
7 2xut_A Proton/peptide symporte 99.7 3.4E-17 1.1E-21 162.9 16.4 144 28-174 39-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.2 7.5E-11 2.6E-15 114.5 13.7 153 20-175 270-433 (451)
9 2cfq_A Lactose permease; trans 99.1 9.8E-10 3.4E-14 105.6 12.5 145 34-181 256-405 (417)
10 3o7q_A L-fucose-proton symport 98.9 2.6E-08 8.9E-13 96.1 16.1 133 30-167 288-424 (438)
11 4aps_A DI-OR tripeptide H+ sym 98.9 1.1E-08 3.8E-13 100.4 12.0 145 31-179 313-475 (491)
12 4gc0_A D-xylose-proton symport 98.8 6.2E-08 2.1E-12 95.0 16.6 155 26-181 301-468 (491)
13 2gfp_A EMRD, multidrug resista 98.5 3.7E-08 1.3E-12 93.0 2.3 143 15-161 212-362 (375)
14 2xut_A Proton/peptide symporte 98.1 2E-06 6.8E-11 85.0 4.7 141 38-179 336-506 (524)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=6.4e-28 Score=235.72 Aligned_cols=275 Identities=13% Similarity=0.125 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh-
Q psy3467 8 AYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG- 83 (455)
Q Consensus 8 ~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~- 83 (455)
....+........+.+.+|.+.+|+ .+.++.+++.+++.++..++++++|+++||+| ..+....+..+......+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 112 (451)
T 1pw4_A 34 FFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV 112 (451)
T ss_dssp HHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555566677788899999 99999999999999999999999999999999 455555555566666666
Q ss_pred ---hhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCC-CchhH
Q psy3467 84 ---HSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG-WPSIF 158 (455)
Q Consensus 84 ---~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~-wr~~f 158 (455)
++++ .++++|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|..++|.+++.+.+. .| ||+.|
T Consensus 113 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f 189 (451)
T 1pw4_A 113 PWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAAL 189 (451)
T ss_dssp HHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCT
T ss_pred hhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHH
Confidence 6777 9999999999999999999999999999999999999999999999999999999998887 78 99999
Q ss_pred HHhhHHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCC--hhhhhcChhHHHHHHHHHHHHHHHH
Q psy3467 159 YVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVP--WKDIVSSLPFWAILIAHMGQNYGYE 236 (455)
Q Consensus 159 ~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (455)
++.+++.++..++.++++||+|++++..++++.+...+...+++.+++....+ .++.+|+|.++...+..++......
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
T 1pw4_A 190 YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY 269 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 99999888877777888898876543222111100000000000000111111 4677889999999999999999999
Q ss_pred HHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHh--hhcc
Q psy3467 237 TLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSM--ITSE 286 (455)
Q Consensus 237 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~ 286 (455)
....+.|.++++.+|+++.+.+.+.+...++..++.++.+++.||+ ++|+
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 321 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 321 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 9999999999988899999999999999999999999999999999 7764
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=5.5e-27 Score=228.22 Aligned_cols=261 Identities=13% Similarity=0.113 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHH---
Q psy3467 8 AYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVA--- 81 (455)
Q Consensus 8 ~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~--- 81 (455)
....++.........+.+|.+.+++|.++++.+++.+.+.++..+++++.|+++||+| ..+....+..+.....
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 111 (438)
T 3o7q_A 32 CSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA 111 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Confidence 3344555555566777788899999999999999999999999999999999999999 4444444444444445
Q ss_pred HhhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhH-hcccCCC------
Q psy3467 82 AGHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLS-EYGFAGG------ 153 (455)
Q Consensus 82 ~~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~-~~~~~~~------ 153 (455)
..++++ .+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+.++|..++|.+++.+. +. .+
T Consensus 112 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---~~~~~~~~ 188 (438)
T 3o7q_A 112 AEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN---VPHQSQDV 188 (438)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS---SCCCCHHH
T ss_pred cccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccccccc
Confidence 666778 99999999999999999999999999999999999999999999999999999999998 54 33
Q ss_pred -------------------CchhHHHhhHHHHHHHHHhhhh-cccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChh
Q psy3467 154 -------------------WPSIFYVFGLVGAVWSVAFLLY-CYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWK 213 (455)
Q Consensus 154 -------------------wr~~f~~~~~~~~~~~i~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (455)
||+.|++.+.+.++..++.++. .||+++++++.+ ++++...+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~----------------~~~~~~~~~~ 252 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA----------------KQGSFSASLS 252 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS----------------STTSHHHHHH
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc----------------cccchhhhHH
Confidence 9999988877766644443332 344332211100 0122234567
Q ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467 214 DIVSSLPFWAILIAHMGQNYGYETLMTELPTF-MKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK 287 (455)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 287 (455)
+++|+|.++...+..++..........+.|.| +++.+|.++.+.+...+...++..++.++.+++.||+++|+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~ 327 (438)
T 3o7q_A 253 RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV 327 (438)
T ss_dssp HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 88999999999999888888888889999999 888779999999999999999999999999999999998854
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.93 E-value=4e-26 Score=217.52 Aligned_cols=257 Identities=16% Similarity=0.193 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHh
Q psy3467 7 TAYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAG 83 (455)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~ 83 (455)
.....++.........+.+|.+.+|+|.|+++.+++.+.+.++..+++++.|+++||+| ..+.......+.......
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 34455666666777778888889999999999999999999999999999999999999 444444444455555555
Q ss_pred hhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhh
Q psy3467 84 HSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFG 162 (455)
Q Consensus 84 ~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~ 162 (455)
++++ .+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|..++|.+++.+.+. .+||+.|++.+
T Consensus 85 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~ 161 (375)
T 2gfp_A 85 TSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM---WNWRACYLFLL 161 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccHHHHHHHHH
Confidence 6677 9999999999999999999999999999999999999999999999999999999999887 79999999988
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhh
Q psy3467 163 LVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTEL 242 (455)
Q Consensus 163 ~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (455)
++.++..+...+.+||++++++++ ++...++++++|+|+++...+..++..........+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (375)
T 2gfp_A 162 VLCAGVTFSMARWMPETRPVDAPR-------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACS 222 (375)
T ss_dssp HHHHHHHCCCCCSSCCCSTTTCCC-------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCcccCCCCccc-------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 888876666667778765432211 2233456788999999999998888888999999999
Q ss_pred hHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhc
Q psy3467 243 PTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITS 285 (455)
Q Consensus 243 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r 285 (455)
|.++++.+|.++.+.+...+...++..++.++.+++.||.+++
T Consensus 223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998899999999999999999999999999999998873
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.90 E-value=3.7e-23 Score=204.32 Aligned_cols=275 Identities=13% Similarity=0.129 Sum_probs=186.6
Q ss_pred HHHHHHHHHHhhhhhcccCccc--------ccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHH
Q psy3467 11 IFVSRVINTKLTRRVHHKDGSF--------IWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVP 79 (455)
Q Consensus 11 ~~~~~~~~~~l~~~~~~~~~~~--------~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~ 79 (455)
.++.+.....++..++.+++++ +.++++.|++.+++.+|..+|++++|+++||+| ..++...+..++..
T Consensus 21 ~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i 100 (491)
T 4gc0_A 21 GLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGV 100 (491)
T ss_dssp HHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3444444444455555554444 334567899999999999999999999999999 44455555555555
Q ss_pred HHH------------------hhhhH-HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHH
Q psy3467 80 VAA------------------GHSIL-ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLP 140 (455)
Q Consensus 80 ~~~------------------~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~ 140 (455)
.++ .++++ +++++|+++|++.|...+....+++|+.|+++|++..++.+.+..+|..+++.
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~ 180 (491)
T 4gc0_A 101 GSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYC 180 (491)
T ss_dssp HHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhh
Confidence 555 36777 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhccc-----CCCCchhHHHhhHHHHHHHHHhhhhcccCCCCCCCCC-hhHH-HHHhhhccc-----------cc
Q psy3467 141 LSGLLSEYGF-----AGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIA-EDER-KYIMSSVWG-----------LA 202 (455)
Q Consensus 141 i~~~l~~~~~-----~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~~~~~~~-~~~~-~~~~~~~~~-----------~~ 202 (455)
++..+..... ..+||+.+....+..++ .+...++.||+|++...+. +++. +..++...+ +.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 259 (491)
T 4gc0_A 181 VNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHS 259 (491)
T ss_dssp HHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccccccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHH
Confidence 9887765311 13577777776666665 5666778999987431111 1111 111100000 00
Q ss_pred CCCCCCCCChhhhhcChhHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHH
Q psy3467 203 GVASSPPVPWKDIVSSLPFW-AILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADS 281 (455)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr 281 (455)
.+++++.......++.++.. ......+......+.+..+.|.+.++ .+.+..+.........+...++.++++++.||
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr 338 (491)
T 4gc0_A 260 LDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDK 338 (491)
T ss_dssp HHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 00011112222333344433 33344445555566666777777666 67777777777777888999999999999999
Q ss_pred hhhccc
Q psy3467 282 MITSEK 287 (455)
Q Consensus 282 ~g~r~~ 287 (455)
+|||+.
T Consensus 339 ~Grr~~ 344 (491)
T 4gc0_A 339 FGRKPL 344 (491)
T ss_dssp HCSHHH
T ss_pred hcCcch
Confidence 999864
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.90 E-value=2.7e-22 Score=198.15 Aligned_cols=256 Identities=16% Similarity=0.127 Sum_probs=183.6
Q ss_pred CcccccccchhhHHHHHHHHHHHHhhhhhHHHHhH-Hh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCc
Q psy3467 29 DGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK-YG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPI 103 (455)
Q Consensus 29 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~ 103 (455)
++|+|.+.++.+++.+++.++..+++++.|+++|| +| .......+..+.......+++. .+++.|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45599999999999999999999999999999999 89 4555555556666667777788 9999999999999999
Q ss_pred hhhHHHHHhcccCCCc--chhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCC
Q psy3467 104 VPCTHALLAKWIPPTE--RSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPE 181 (455)
Q Consensus 104 ~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~ 181 (455)
.+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+. .|||+.|++.++..++..+...+..|+..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999988 77888889999999999999999999998 899999999877776655555444443322
Q ss_pred CC---C--CCChhHHHHHhhh----------------cccccC----------------------CCCCCCCChhhhhcC
Q psy3467 182 AH---P--NIAEDERKYIMSS----------------VWGLAG----------------------VASSPPVPWKDIVSS 218 (455)
Q Consensus 182 ~~---~--~~~~~~~~~~~~~----------------~~~~~~----------------------~~~~~~~~~~~~~~~ 218 (455)
++ + ..++++++...+. ..+..+ ..+++..+..+..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 11 1 1111221111111 000000 000011111111222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467 219 LPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEK 287 (455)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 287 (455)
...+...+.....+..........|.+.++..+.+..+.+.......++..++.++.+++.||++||+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~ 351 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP 351 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC
Confidence 334445555555555566667788889988788887888999999999999999999999999999864
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.81 E-value=8.1e-20 Score=176.37 Aligned_cols=256 Identities=12% Similarity=0.098 Sum_probs=162.2
Q ss_pred HHHHhhhhhcc-cCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHH---HHHHHHhhhhH--
Q psy3467 17 INTKLTRRVHH-KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAF---LVPVAAGHSIL-- 87 (455)
Q Consensus 17 ~~~~l~~~~~~-~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~---~~~~~~~~~~~-- 87 (455)
....+.+.+|. +++++|.|+++.|++.+.+.++..++++++|+++||+| ..+....+..+ ........+..
T Consensus 22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555 45679999999999999999999999999999999999 33322222211 11111111111
Q ss_pred HHHHHHHHHhhcccCchhhHHHHHhcccCC--CcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHH
Q psy3467 88 ALSIIRFIQGLGEGPIVPCTHALLAKWIPP--TERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVG 165 (455)
Q Consensus 88 ~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~ 165 (455)
.+...+.+.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+.+ .+||+.|++.++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCA 177 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHH
Confidence 234556676766655544444445555433 456777888888899999999999999876 48999999877765
Q ss_pred HHHHHHhhhhcccCCCCCCCCChhHHHHHhhhcccccCCCCCCCCChhhhhcChhHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy3467 166 AVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTF 245 (455)
Q Consensus 166 ~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (455)
++..+..++..||+++..+. ++++ ++++++....++++++|+|+++...+..+...........+.|.|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (417)
T 2cfq_A 178 LILAVLLFFAKTDAPSSATV-ANAV----------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANF 246 (417)
T ss_dssp TTHHHHSCSSCCCCSCSSCS-SSSS----------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccccccccc-cccc----------ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 54333333333333221100 0000 000001112234678889988877666555555555556678888
Q ss_pred HHHHhcC---ccccchhhchhHHHHHHHHHHHHHHHHHHhhhccc
Q psy3467 246 MKQVLHF---NIKENGTLSALPYLAMWIFSMFASFIADSMITSEK 287 (455)
Q Consensus 246 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 287 (455)
+++.++. +..+.+...+...++..++.++.+++.||++||+.
T Consensus 247 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 291 (417)
T 2cfq_A 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA 291 (417)
T ss_dssp HHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH
Confidence 8765442 24445677777778888999999999999998854
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.73 E-value=3.4e-17 Score=162.93 Aligned_cols=144 Identities=20% Similarity=0.233 Sum_probs=121.2
Q ss_pred cCcccc------cccchhhHHHHHHHHHHHHhhhhhHHHHhHH-h---HHHHHHHHHHHHHHHHHhhh-hH-HHHHHHHH
Q psy3467 28 KDGSFI------WTTAEQGYVLSSFFYGYVLTQIPFGILAKKY-G---IGMLINSVFAFLVPVAAGHS-IL-ALSIIRFI 95 (455)
Q Consensus 28 ~~~~~~------~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-G---~~l~~~~~~~~~~~~~~~~~-~~-~~~~~r~l 95 (455)
+.+++| .+..+.+++.+++.++..+++++.|+++||+ | ..+....+..+.......++ +. .+++.|++
T Consensus 39 l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 118 (524)
T 2xut_A 39 LMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFL 118 (524)
T ss_dssp HHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 345677 9999999999999999999999999999999 9 44444445555555556666 67 89999999
Q ss_pred HhhcccCchhhHHHHHhcccCCCcchhHHHH---HHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHh
Q psy3467 96 QGLGEGPIVPCTHALLAKWIPPTERSRLGAF---VYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAF 172 (455)
Q Consensus 96 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~---~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~ 172 (455)
+|++.+...+...+++.|++|+++|+++.+. .+.+.++|..++|.+++.+.+. .+||+.|++.+++.++..+..
T Consensus 119 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 119 IALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877666 8899999999999999999887 899999999888776644444
Q ss_pred hh
Q psy3467 173 LL 174 (455)
Q Consensus 173 ~~ 174 (455)
++
T Consensus 196 ~~ 197 (524)
T 2xut_A 196 WL 197 (524)
T ss_dssp HS
T ss_pred HH
Confidence 33
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.23 E-value=7.5e-11 Score=114.49 Aligned_cols=153 Identities=11% Similarity=0.039 Sum_probs=120.5
Q ss_pred HhhhhhcccCcc-cccccchhhHHHHHHHHHHHHhhhhhHHHHhHH--h---HHHHHHHHHH-HHHHHHHhh--hhH-HH
Q psy3467 20 KLTRRVHHKDGS-FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKY--G---IGMLINSVFA-FLVPVAAGH--SIL-AL 89 (455)
Q Consensus 20 ~l~~~~~~~~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--G---~~l~~~~~~~-~~~~~~~~~--~~~-~~ 89 (455)
.+...+|...++ +|.+..+.+++.+...++..++.++.|+++||+ | .......+.. +........ .+. .+
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD 349 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 344444544444 899999999999999999999999999999999 8 2222322322 233333333 244 67
Q ss_pred HHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHH-HHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHH
Q psy3467 90 SIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQF-GTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVW 168 (455)
Q Consensus 90 ~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~ 168 (455)
.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+. .||+..|++.+++.++.
T Consensus 350 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~ 426 (451)
T 1pw4_A 350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILA 426 (451)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHH
Confidence 77888999988888888899999999999999999999999999 999999999999998 89999999988887775
Q ss_pred HHHhhhh
Q psy3467 169 SVAFLLY 175 (455)
Q Consensus 169 ~i~~~~~ 175 (455)
.++.++.
T Consensus 427 ~~~~~~~ 433 (451)
T 1pw4_A 427 VILLIVV 433 (451)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.06 E-value=9.8e-10 Score=105.60 Aligned_cols=145 Identities=12% Similarity=0.071 Sum_probs=110.3
Q ss_pred cccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHhhcccCchhhHHH
Q psy3467 34 WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSIL-ALSIIRFIQGLGEGPIVPCTHA 109 (455)
Q Consensus 34 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~~~~ 109 (455)
.+..+.++..++..++..++.++.|+++||+| .......+..+........++. .+++..++.+++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888888999999999999999999 2222222333333333444445 6777777888877666777789
Q ss_pred HHhcccCCCcchhHHHH-HHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHhhhhcccCCC
Q psy3467 110 LLAKWIPPTERSRLGAF-VYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPE 181 (455)
Q Consensus 110 ~i~e~~~~~~r~~~~~~-~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~~~~~~e~~~ 181 (455)
++.|.+|++.|+++.+. ++....+|..++|.+++.+.+. .|++..|.+.+++.++..++.++..||+++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999999999999998 4788889999999999999887 788889988888877766666666666443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.91 E-value=2.6e-08 Score=96.10 Aligned_cols=133 Identities=14% Similarity=0.031 Sum_probs=103.3
Q ss_pred cccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcccCchhh
Q psy3467 30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPC 106 (455)
Q Consensus 30 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 106 (455)
+.+|.+..+.++..+.+.++..++.++.|+++||+| .......+..+........++......-++.|++.+...+.
T Consensus 288 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 367 (438)
T 3o7q_A 288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPT 367 (438)
T ss_dssp HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999 33333333333334444445553344448889999999999
Q ss_pred HHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCC-CchhHHHhhHHHHH
Q psy3467 107 THALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG-WPSIFYVFGLVGAV 167 (455)
Q Consensus 107 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~-wr~~f~~~~~~~~~ 167 (455)
..++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+. .| ++..|++.++..++
T Consensus 368 ~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 368 IFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA---AGNIPTAELIPALCFAV 424 (438)
T ss_dssp HHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH---HTSSGGGGHHHHHHHHH
T ss_pred HHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHH
Confidence 999999999855 888888877 5669999999999999988 77 99999876555444
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.86 E-value=1.1e-08 Score=100.36 Aligned_cols=145 Identities=15% Similarity=0.040 Sum_probs=108.8
Q ss_pred ccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-H--HH-----HHHHHHHHHHHHHHhh---------hhH-HHHHH
Q psy3467 31 SFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-I--GM-----LINSVFAFLVPVAAGH---------SIL-ALSII 92 (455)
Q Consensus 31 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~--~l-----~~~~~~~~~~~~~~~~---------~~~-~~~~~ 92 (455)
.++.+..+.++..+...++..++.++.|++.||+| . .. .+..+..+........ .+. .+.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4aps_A 313 RVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGS 392 (491)
T ss_dssp SCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHH
T ss_pred HhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHH
Confidence 35556577888999999999999999999999998 1 11 2222222222222221 133 67778
Q ss_pred HHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHhhHHHHHHHHHh
Q psy3467 93 RFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAF 172 (455)
Q Consensus 93 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~~~~~~~~~i~~ 172 (455)
-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+ .+.++.|.+.+.+.++..++.
T Consensus 393 ~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 393 WALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA----KSEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG----SSTTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHH
Confidence 8899999998899999999999999999999999999999999999999988866 467788888888877766666
Q ss_pred hhhcccC
Q psy3467 173 LLYCYEE 179 (455)
Q Consensus 173 ~~~~~e~ 179 (455)
+++.++.
T Consensus 469 ~~~~~~~ 475 (491)
T 4aps_A 469 VFLSKRI 475 (491)
T ss_dssp HHC----
T ss_pred HHHHHHH
Confidence 6665554
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.84 E-value=6.2e-08 Score=94.98 Aligned_cols=155 Identities=12% Similarity=0.049 Sum_probs=103.2
Q ss_pred cccCcccccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh---HHHHHHHHHHHHH---HHH--HhhhhH-HHH-HHHHH
Q psy3467 26 HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG---IGMLINSVFAFLV---PVA--AGHSIL-ALS-IIRFI 95 (455)
Q Consensus 26 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G---~~l~~~~~~~~~~---~~~--~~~~~~-~~~-~~r~l 95 (455)
+.+.++.+.+............+...++.++.+.+.||+| ..+.......+.. ... ...+.. .++ ..-+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 3344455666666777777888889999999999999999 2222222111111 111 111222 222 22222
Q ss_pred HhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcc---cCCCCchhHHHhhHHHHHHHHHh
Q psy3467 96 QGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYG---FAGGWPSIFYVFGLVGAVWSVAF 172 (455)
Q Consensus 96 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~---~~~~wr~~f~~~~~~~~~~~i~~ 172 (455)
.+.+. ...+....+.+|.+|.+.|+++.++......+|..+++.+.+.+.+.. ...++.+.|++.+.++++..+..
T Consensus 381 ~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 381 AAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp HHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33333 345778899999999999999999999999999998887776553310 00467788899899998888888
Q ss_pred hhhcccCCC
Q psy3467 173 LLYCYEEPE 181 (455)
Q Consensus 173 ~~~~~e~~~ 181 (455)
++++||++.
T Consensus 460 ~~~~PETkg 468 (491)
T 4gc0_A 460 WKFVPETKG 468 (491)
T ss_dssp HHHCCCCTT
T ss_pred HheecCCCC
Confidence 899999854
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.48 E-value=3.7e-08 Score=93.01 Aligned_cols=143 Identities=11% Similarity=-0.013 Sum_probs=108.7
Q ss_pred HHHHHHhhhhhcccCcc-cccccchhhHHHHHHHHHHHHhhhhhHHHHhHHh-HHHHHHHH-HHHHHH--HHHh--hhhH
Q psy3467 15 RVINTKLTRRVHHKDGS-FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-IGMLINSV-FAFLVP--VAAG--HSIL 87 (455)
Q Consensus 15 ~~~~~~l~~~~~~~~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-~~l~~~~~-~~~~~~--~~~~--~~~~ 87 (455)
......+....|...++ +|.++.+.+++.+...++..++.++.+++.||+| ........ ...... .... .++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (375)
T 2gfp_A 212 LAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNV 291 (375)
T ss_dssp HHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccH
Confidence 33334445556666555 8999999999999999999999999999999999 33322222 111111 1111 1234
Q ss_pred -HHHHHHHHHhhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCCchhHHHh
Q psy3467 88 -ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVF 161 (455)
Q Consensus 88 -~~~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~wr~~f~~~ 161 (455)
.+.+..++.|++.+...+....++.|..| |+|+++.++.+....+|..++|.+.+.+.+. .+++..+.+.
T Consensus 292 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~~~~~~~~~~ 362 (375)
T 2gfp_A 292 WTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT---GQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC---CcccHHHHHH
Confidence 66778889999999899999999999998 8999999999999999999999999999877 6777777664
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.08 E-value=2e-06 Score=84.97 Aligned_cols=141 Identities=10% Similarity=-0.002 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHHHHHhhhhhHHHH----hHHh-------HHHHHHHHHHHHHHHHHhh---------hhH-HHHHHHHHH
Q psy3467 38 EQGYVLSSFFYGYVLTQIPFGILA----KKYG-------IGMLINSVFAFLVPVAAGH---------SIL-ALSIIRFIQ 96 (455)
Q Consensus 38 ~~~~~~s~~~l~~~~~~~~~g~l~----dr~G-------~~l~~~~~~~~~~~~~~~~---------~~~-~~~~~r~l~ 96 (455)
..+++.+...++..++.++.+++. ||.| ....+..+..+........ .+. .+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 345555665666677777776654 5554 1222222222222222221 233 677788999
Q ss_pred hhcccCchhhHHHHHhcccCCCcchhHHHHHHhhHHHHHHHHHHHHHHhHhcccCCCC---------chhHHHhhHHHHH
Q psy3467 97 GLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGW---------PSIFYVFGLVGAV 167 (455)
Q Consensus 97 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w---------r~~f~~~~~~~~~ 167 (455)
|++.+...+....++.|..|+++|++++++.+....+|..++|.+.+.+.+... .+| +..|++.+.+.++
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV-TEQIVQTGMSVTAFQMFFFAGFAIL 494 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH-HHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccccccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998865300 123 3336666776666
Q ss_pred HHHHhhhhcccC
Q psy3467 168 WSVAFLLYCYEE 179 (455)
Q Consensus 168 ~~i~~~~~~~e~ 179 (455)
..++.+++.++.
T Consensus 495 ~~~~~~~~~~~~ 506 (524)
T 2xut_A 495 AAIVFALYARSY 506 (524)
T ss_dssp HHHHHC------
T ss_pred HHHHHHHHHHHh
Confidence 566555555554
Done!