RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3467
(455 letters)
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 304 bits (781), Expect = 3e-99
Identities = 127/278 (45%), Positives = 171/278 (61%), Gaps = 9/278 (3%)
Query: 28 KDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKY------GIGMLINSVFAFLVPVA 81
K+ +F W+ A QG +LSS FYG ++ QIP G LA KY GIGM ++SV + ++P A
Sbjct: 67 KNPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWA 126
Query: 82 AGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPL 141
AG I + R IQGL +G + P TH ++ KW PP ERSRL +G Q GT LP+
Sbjct: 127 AGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPI 186
Query: 142 SGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGL 201
SG L E GGWP IFYVFG+VG WS+ + ++ ++P HP I++ E+KYI SS+ G
Sbjct: 187 SGWLCESW--GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQG- 243
Query: 202 AGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLS 261
++ +P K I SLP WAI A G + Y L T LPTF+ VL + KENG LS
Sbjct: 244 QKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLS 303
Query: 262 ALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINA 299
+LPYL W+ S+FA ++AD + +S+ S T+ RKI N
Sbjct: 304 SLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNG 341
Score = 70.9 bits (174), Expect = 4e-13
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 395 KSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHG 447
+P K I SLP WAI A G + Y L T LPTF+ VL + KE+G
Sbjct: 248 TRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENG 300
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 105 bits (265), Expect = 5e-25
Identities = 69/287 (24%), Positives = 119/287 (41%), Gaps = 18/287 (6%)
Query: 35 TTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSILA 88
+ A+ GYV S+F +GYV+ Q P G L ++G + ++I VF L A ++
Sbjct: 27 SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA--YVS 84
Query: 89 LSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY 148
L I+R + G E P P ++A W P +ER+ + + G + PL G +
Sbjct: 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI- 143
Query: 149 GFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSP 208
W F + G++G +W V +L + + P+ +E KYI+ P
Sbjct: 144 --HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ-KAKWLTEEEKYIVVGGLLAEQQGKGP 200
Query: 209 PVPWKDIVSSL----PFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALP 264
P K + L W + + N G +T PT++ Q +I E G +++LP
Sbjct: 201 STPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLP 260
Query: 265 YLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIV 311
+ +I + ++D + + + VLS M
Sbjct: 261 GIVGFIGMILGGRLSD--LLLRRGKSLVFARKTAIIAGLVLSLLMFA 305
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 104 bits (260), Expect = 1e-24
Identities = 65/258 (25%), Positives = 107/258 (41%), Gaps = 25/258 (9%)
Query: 31 SFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGH 84
+ E G +L++F GY L Q G L+ ++G IG+L+ ++ L+
Sbjct: 26 DLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLL--LFAS 83
Query: 85 SILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGL 144
S+ L ++R +QGLG G + P AL+A W PP ER R + AG G L GL
Sbjct: 84 SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL 143
Query: 145 LSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGV 204
L+ GW + F + ++ + +V L P E
Sbjct: 144 LASL---FGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEA------------ 188
Query: 205 ASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALP 264
+P VP ++ P +L+A + + + L+T LP + +VL + G L L
Sbjct: 189 -PAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQ-EVLGLSALLAGLLLGLA 246
Query: 265 YLAMWIFSMFASFIADSM 282
L I + ++D +
Sbjct: 247 GLLGAIGRLLLGRLSDRL 264
Score = 31.6 bits (72), Expect = 0.77
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 7/112 (6%)
Query: 34 WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYGIGMLINSVFAFLVPVAAG-------HSI 86
+ G +L + ++ G L+ + G + L+ A G S
Sbjct: 234 LSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESS 293
Query: 87 LALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFS 138
L L + + G G G + P +AL++ P ER G
Sbjct: 294 LWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
Score = 28.5 bits (64), Expect = 7.9
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 224 ILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIAD 280
+ +A G L LP ++ + L + E G L L + A ++D
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSD 57
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 98.2 bits (245), Expect = 1e-22
Identities = 64/299 (21%), Positives = 122/299 (40%), Gaps = 59/299 (19%)
Query: 34 WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSIL 87
+ ++ G ++S+F GY L + G L+ ++G +G+L+ ++ + L+ A S+
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--SSLW 88
Query: 88 ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSE 147
L + RF+ GLG G + P AL+A+W PP ER R AG G + L GLL+E
Sbjct: 89 LLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148
Query: 148 YGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASS 207
GW +F + ++G + ++ L
Sbjct: 149 SL---GWRWLFLILAILGLLLALLLLFLL------------------------------- 174
Query: 208 PPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLA 267
+ +A ++GY L+T LP ++++VL + E G L +L L
Sbjct: 175 -----------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLG 223
Query: 268 MWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLTG 326
+ ++ ++D + +I L + + ++ +L + ++L G
Sbjct: 224 GILGALLGGLLSD------RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLG 276
Score = 48.5 bits (116), Expect = 4e-06
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 32 FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG-------IGMLINSVFAFLVPVAAGH 84
+ AE G +LS F G +L + G+L+ + G IG+L+ ++ L+ +A
Sbjct: 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265
Query: 85 SILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGL 144
++L +++ + G G G P L ++ PP R G L+GL
Sbjct: 266 ALLLVAL--LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL 323
Query: 145 LSEYGFAGGWPSIFYVFGLVGAVWSVAFLLY 175
L + GG+ +F + + + ++ LL
Sbjct: 324 LLD---TGGYGGVFLILAALALLAALLLLLL 351
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 63.5 bits (155), Expect = 6e-11
Identities = 42/272 (15%), Positives = 95/272 (34%), Gaps = 22/272 (8%)
Query: 31 SFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGH 84
+ + G +LSSF Y +++ G ++ + IG+++ ++
Sbjct: 24 EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFF--GFST 81
Query: 85 SILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGL 144
S+ ++ + + G+ +G P + KW +ER +F G PL +
Sbjct: 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPL--V 139
Query: 145 LSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGV 204
L W +F V G++ + S+ L + P++ + E G A
Sbjct: 140 LFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQS-CGLPPAEEMPN-EEPDGDAEK 197
Query: 205 ASSPPVPWK----DIVSSLPFWAILIAH---MGQNYGYETLMTELPTFMKQVLHFNIKEN 257
+ ++ + W I + + G P ++ Q F+ ++
Sbjct: 198 KEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDW---SPLYLTQEKGFSKEKA 254
Query: 258 GTLSALPYLAMWIFSMFASFIADSMITSEKFS 289
L L + ++ A +++D + +
Sbjct: 255 SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGP 286
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 56.9 bits (138), Expect = 6e-10
Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 18/143 (12%)
Query: 40 GYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSILALSIIR 93
GY L Y G+L ++G +G+ I + A +I L I R
Sbjct: 6 GYALGQLIYS-----PLSGLLTDRFGRKPVLLVGLFIFVLST--AMFALSSNITVLIIAR 58
Query: 94 FIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG 153
F+QG G + AL+A PP ER + AG G + PL G+L+++ G
Sbjct: 59 FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF---LG 115
Query: 154 WPSIFYVFGLVGAVWSVAFLLYC 176
W + F ++ LL
Sbjct: 116 WRAPFLFLAILALA--AFILLAF 136
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 55.4 bits (134), Expect = 2e-08
Identities = 59/271 (21%), Positives = 100/271 (36%), Gaps = 35/271 (12%)
Query: 35 TTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSILA 88
+ G++ S+ G + FG LA + G +L+ SVF L +A ++
Sbjct: 50 DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALAT--NVTQ 107
Query: 89 LSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY 148
L I+RF+ GLG G ++P +AL++++ P R ++ G G L+G L
Sbjct: 108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL--- 164
Query: 149 GFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEP-----EAHPNIAEDERKYIMSSVWGLAG 203
GW S+FYV G+ + + L+ E P I + A
Sbjct: 165 IPVFGWRSLFYVGGIAPLLL-LLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQ 223
Query: 204 ----VASSPPVPWKDIV----------SSLPFWAILIAHMGQNYGYETLMTELPTFMKQV 249
+ + + ++ W + G L LP M +
Sbjct: 224 SALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFM---LLVGVYFLTNWLPKLMVE- 279
Query: 250 LHFNIKENGTLSALPYLAMWIFSMFASFIAD 280
L F++ T AL I S+ ++AD
Sbjct: 280 LGFSLSLAATGGALFNFGGVIGSIIFGWLAD 310
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 53.9 bits (130), Expect = 9e-08
Identities = 63/273 (23%), Positives = 98/273 (35%), Gaps = 53/273 (19%)
Query: 53 TQIPF-GILAKKYG------IGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVP 105
IP G LAK++G I ++ + L VA ++ + I R IQG G GP++P
Sbjct: 52 ISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--PNLELMIIFRVIQGFGGGPLIP 109
Query: 106 CTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVG 165
+ + L PP +R R A L G + E W IF + +G
Sbjct: 110 LSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE---NYHWRWIFLINVPIG 166
Query: 166 A-VWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLA----GVASSPPVPWKD------ 214
V VAF + ++P A N D ++ SV GL G++ P W D
Sbjct: 167 IIVVVVAFFILPRDKPAASENF--DFLGLLLLSV-GLGSLLYGLSEGPERGWFDSNEILI 223
Query: 215 --IVSSLPFWAILIAHMGQN-------------------------YGYETLMTELPTFMK 247
I + A ++ + + G LP +++
Sbjct: 224 LSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQ 283
Query: 248 QVLHFNIKENGTLSALPYLAMWIFSMFASFIAD 280
QVL + + G LA + S A + D
Sbjct: 284 QVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD 316
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 48.4 bits (116), Expect = 4e-06
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 10/161 (6%)
Query: 27 HKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPV 80
G+ +T G ++S F G ++ + G L ++G IG ++ + A L
Sbjct: 36 TSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGF 95
Query: 81 AAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLP 140
A G S L + R I GLG G I +++ P R LG+ G FG + +
Sbjct: 96 AKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAI 155
Query: 141 LSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPE 181
+ L++Y + GW + V ++ L+ PE
Sbjct: 156 IGLGLNKYSNSDGWRIPLG----LQFVPAILLLIGLLFLPE 192
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 45.7 bits (109), Expect = 3e-05
Identities = 50/252 (19%), Positives = 93/252 (36%), Gaps = 31/252 (12%)
Query: 35 TTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSILA 88
+ G +++++ G L +L + + + V L +A ++L
Sbjct: 46 SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLL 105
Query: 89 LSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEY 148
L+ R + GL G AL A+ +PP +R R A V+ G TV +PL L +
Sbjct: 106 LA--RALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL 163
Query: 149 GFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSP 208
GW + F ++ +A LL P + + + + L + P
Sbjct: 164 ---FGWRATFLAIAVLAL---LALLLLWKLLPPS------EISGSLPGPLRTLLRLLRRP 211
Query: 209 PVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAM 268
V L+A G+ L T + F++ V F++ + +A
Sbjct: 212 GV-----------LLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAG 260
Query: 269 WIFSMFASFIAD 280
+I ++ +AD
Sbjct: 261 FIGNLLGGRLAD 272
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 43.4 bits (103), Expect = 2e-04
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 58 GILAKKYGIG-MLINSVFAF-LVPVAAGH--SILALSIIRFIQGLGEGPIVPCTHALLAK 113
G LA + G +LI SV F L +A +L + R + G+G G +P AL ++
Sbjct: 71 GRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSE 130
Query: 114 WIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLV 164
+ P R + +Y G FG + + L + W IFYV G+
Sbjct: 131 AVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG---DAAWRHIFYVGGVG 178
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 41.9 bits (99), Expect = 5e-04
Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 32 FIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKY------GIGMLINSVFAFLVPVAAGHS 85
+ + G + S+F Y +++ G+L+ + G++++++ L S
Sbjct: 59 GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILF--GFSPS 116
Query: 86 ILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLL 145
+ +++ + G +G P + W ER + G PL LL
Sbjct: 117 LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGG-ALAPLVALL 175
Query: 146 SEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEA--HPNIAE 188
+ + F GGW + FY G++ + ++ L + P++ P I E
Sbjct: 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEE 220
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 40.8 bits (96), Expect = 0.001
Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 24/147 (16%)
Query: 44 SSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSILALSIIRFIQG 97
S FF G +L FG L+ ++G + L+ +V L + +++ + R + G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL--VFRLLVG 191
Query: 98 LGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFA---GGW 154
+G G I L +++P +R+ +G + FSL GL+ A W
Sbjct: 192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLI------QVFFSL---GLVLLPLVAYFIPDW 242
Query: 155 PSIFYVFGLVGAVWSVAFLLYCYEEPE 181
+ L ++ + F L + PE
Sbjct: 243 RWLQ----LAVSLPTFLFFLLSWFVPE 265
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 40.4 bits (95), Expect = 0.001
Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 40/295 (13%)
Query: 43 LSSFFYGYVLTQIPFGILAKKYG------IGMLI---NSVFAFLVPVAAGHSILALSIIR 93
L+ + G+ Q+ +G L+ +YG +G+ I +S+ L +I L ++R
Sbjct: 46 LTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN-----NIETLLVLR 100
Query: 94 FIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG 153
F+Q G + AL+ P E SR+ + + + L G + +
Sbjct: 101 FVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---LS 157
Query: 154 WPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDE-RKYIMS--------SVWGLAGV 204
W +IF L G + L + PE P A + Y + WG A +
Sbjct: 158 WHAIFAFLSLAGI---LLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALI 214
Query: 205 ASSPPVPWKDIVSSLPFWAILIAHMG---QNYGYETLMTELPT-FMKQVLHFNIKENGTL 260
+ + S PF + I MG +G + + F + IK+ G
Sbjct: 215 YGASFGGFFAFFSGAPF--VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK 272
Query: 261 SALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSAL 315
S L + + +F S + + + S II ++ + MI S A+
Sbjct: 273 SLLR-MGLILF--AVSAVL--LEITAILGLGSWAMIIGPMMFVGIGNSMISSIAM 322
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 38.5 bits (88), Expect = 0.006
Identities = 61/306 (19%), Positives = 112/306 (36%), Gaps = 16/306 (5%)
Query: 31 SFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGH 84
S G +LS+FF GY + + G L +YG IG+L+ + L+ +A
Sbjct: 33 SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNV 92
Query: 85 SILALSIIRFIQGLGEGPIVPCTHALLAKWIPPT-ERSRLGAFVYAGAQFGTVFSLPLSG 143
+ L I+R +QGLG G ++P ALL++W P ER V GA + PL
Sbjct: 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLA 152
Query: 144 LLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCY---------EEPEAHPNIAEDERKYI 194
L GW + F + L+G + + LL A + + +
Sbjct: 153 GLLLGALLWGWRAAFLLAALLGLLLLILVLLLDLLLAAPRLPLAVGLALIELGKLLLLLL 212
Query: 195 MSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNI 254
+ + GL + + + +A + G L+ LP + +
Sbjct: 213 ILLLGGLVLLLLGLYLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGAAGGLSA 272
Query: 255 KENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSA 314
L + + + + + + S++ R I+ A + +++ A
Sbjct: 273 LVGAAGGLLALILLGLAGLLGTLVGGSLLVDRLGRSLGLRAILLAGALLLAILLLVLLLA 332
Query: 315 LMIWKG 320
L++
Sbjct: 333 LVLTIL 338
>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease. This protein is
a part of the Major Facilitator Superfamily (Pfam family
pfam07690). Member of this family are found in a number
of proteobacterial genomes, but only in the context of
having genes for 4-hydroxyphenylacetate (4-HPA)
degradation. The protein is characterized by Prieto, et
al. (PMID:9315705) as 4-hydroxyphenylacetate permease in
E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are
shown to competitively inhibit 4-HPA transport and
therefore also interact specificially.
Length = 412
Score = 37.7 bits (87), Expect = 0.011
Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 9/161 (5%)
Query: 40 GYVLSSFFYGYVLTQIPFGILAKKYGIGMLINSVFAFLVPVAAGHSILA-----LSIIRF 94
G + F+ YV+ IP I+ G I + L +A+ ++ A L ++R
Sbjct: 46 GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV-LWGIASTATMFATGPESLYLLRI 104
Query: 95 IQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSG-LLSEYGFAG- 152
+ G+ E +P L W P R+R A L LSG +L+ G
Sbjct: 105 LVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMAL 164
Query: 153 -GWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERK 192
GW +F + G + V + + P+ + E+++K
Sbjct: 165 KGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKK 205
>gnl|CDD|119398 cd06530, S26_SPase_I, The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are
translocated across biological membranes. The bacterial
signal peptidase I, which is the most intensively
studied, has two N-terminal transmembrane segments
inserted in the plasma membrane and a hydrophilic,
C-terminal catalytic region that is located in the
periplasmic space. Although the bacterial signal
peptidase I is monomeric, signal peptidases of
eukaryotic cells commonly function as oligomeric
complexes containing two divergent copies of the
catalytic monomer. These are the IMP1 and IMP2 signal
peptidases of the mitochondrial inner membrane that
remove leader peptides from nuclear- and
mitochondrial-encoded proteins. Also, two components of
the endoplasmic reticulum signal peptidase in mammals
(18-kDa and 21-kDa) belong to this family and they
process many proteins that enter the ER for retention or
for export to the Golgi apparatus, secretory vesicles,
plasma membranes or vacuole. An atypical member of the
S26 SPase type I family is the TraF peptidase which has
the remarkable activity of producing a cyclic protein of
the Pseudomonas pilin system. The type I signal
peptidases are unique serine proteases that utilize a
serine/lysine catalytic dyad mechanism in place of the
classical serine/histidine/aspartic acid catalytic triad
mechanism.
Length = 85
Score = 34.1 bits (79), Expect = 0.016
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 16/54 (29%)
Query: 332 VVVLREDGS---------VKFLTKGDN--NSVDDRGLYAPGQLWLTKNDVVGRA 374
VVV + G + + GDN NS+D R ++D+VG+
Sbjct: 37 VVVFKSPGDPGKPIIKRVIGYFVLGDNRNNSLDSRYWGPV-----PEDDIVGKV 85
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
and metabolism].
Length = 498
Score = 36.1 bits (84), Expect = 0.035
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 17/149 (11%)
Query: 38 EQGYVLSSFFYGYV-LTQIPFGILAKKYGIGMLINSVFAFLVPVAAGHSILALS------ 90
L S + V LT I G LA + +G ++ + +A GH +LA+S
Sbjct: 61 THATGLFSAYGSLVYLTPIIGGWLADRV-LGTR-RTIVLGAILMAIGHLVLAISSVSGPG 118
Query: 91 ---IIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFV--YAGAQFGTVFSLPLSGLL 145
I + +G G P +LL + P + R G F Y G G++ + ++GLL
Sbjct: 119 GLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLL 178
Query: 146 SEYGFAGGWPSIFYVFGLVGAVWSVAFLL 174
+ GW F + + + V FLL
Sbjct: 179 AIN---YGWHVGFGLAAVGMIIGLVIFLL 204
>gnl|CDD|162096 TIGR00897, 2A0118, polyol permease family. This family of proteins
includes the ribitol and D-arabinitol transporters from
Klebsiella pneumoniae and the alpha-ketoglutarate
permease from Bacillus subtilis [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 402
Score = 36.0 bits (83), Expect = 0.040
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 34 WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG----------IGMLINSVFAFLVPVAAG 83
++T+E + +FF+ ++ + FGI+ K G +G I ++ + +P G
Sbjct: 254 FSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFG 313
Query: 84 HSILALSIIRFIQGLGEGPIVP 105
HS II G+ VP
Sbjct: 314 HSFAVALIIAIALGIFLAGYVP 335
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 35.7 bits (82), Expect = 0.041
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 57 FGILAKKYGIG-MLINSVFAFLVPVAAGHSILA-----LSIIRFIQGLGEGPIVPCTHAL 110
FG+LA K+G +++ S+ A+ V G S LA L++ RFI G+G C
Sbjct: 73 FGLLADKFGRKPLMMWSIVAY--SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTY 130
Query: 111 LAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYV 160
+ P +S+ AF+ +G G + + + + + A GW + F+V
Sbjct: 131 AVESWPKHLKSKASAFLVSGFGIGNIIA---AYFMPSFAEAYGWRAAFFV 177
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 34.9 bits (81), Expect = 0.078
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 26/154 (16%)
Query: 43 LSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSILALSIIRFIQ 96
LS++ G+ + Q+ +G +A +G G L+ ++ A A +I L +RF+
Sbjct: 32 LSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVAC--ALAQTIDQLIYMRFLH 89
Query: 97 GLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSL-PL-----SGLLSEYGF 150
GL +AL+ P E SR+ +FV V ++ PL G L + F
Sbjct: 90 GLAAAAASVVINALMRDMFPKEEFSRMMSFVT------LVMTIAPLLAPIIGGWLLVW-F 142
Query: 151 AGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHP 184
W +IF+V L + + + PE P
Sbjct: 143 --SWHAIFWVLALAAILAAALVFFFI---PETLP 171
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 34.7 bits (80), Expect = 0.11
Identities = 55/224 (24%), Positives = 95/224 (42%), Gaps = 45/224 (20%)
Query: 57 FGILAKKYG------IGMLINSVFAF---LVPVAAGHSILA---LSIIRFIQGLGEGPIV 104
FG+L KYG I ++I S+ F L+P A I A L + + QG G
Sbjct: 77 FGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEY 136
Query: 105 PCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLS----EYGFAG-GWPSIFY 159
+A++ P +R +G+++ G+ G V + L+S E F GW F+
Sbjct: 137 TGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFF 196
Query: 160 V---FGLVGAVWSVAFLLYCYEEPEAHP----NIAEDERKYIMSSVWGLAGVASSPPVPW 212
+ G++G +L + EE A + + +R+ G+ P V +
Sbjct: 197 IALPLGIIGL-----YLRHALEETPAFQQHVDKLEQGDRE----------GLQDGPKVSF 241
Query: 213 KDIVSSLPFWAILIAHMG----QNYGYETLMTELPTFMKQVLHF 252
K+I + W L+ +G N Y L+T +P+++ LH+
Sbjct: 242 KEIATK--HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHY 283
>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam
antibiotics, the antitumor agent, bestatin, and various
protease inhibitors). [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 641
Score = 33.2 bits (76), Expect = 0.31
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 59 ILAKKYGIGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPT 118
L+ Y +G + S+ A H L+L + I LG G I PC A
Sbjct: 59 YLSLVYVVGHALASLGAVPSLGHPLHDALSLVGLALI-ALGTGGIKPCVSAFGGDQFEER 117
Query: 119 E---RSRLGAFVYAGAQFGTVFSLPLSGLL-SEYGFAGGWPSIFYVFGLVGAVWSVAFLL 174
+ R R +F Y G++FS ++ +L + G G FG+ G + ++A ++
Sbjct: 118 QLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTLALIV 177
Query: 175 Y 175
+
Sbjct: 178 F 178
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 32.7 bits (75), Expect = 0.39
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 35 TTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAA 82
T E + +FF GY + +P G+L KK G +G+L+ +V A L AA
Sbjct: 46 TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA 99
>gnl|CDD|182260 PRK10133, PRK10133, L-fucose transporter; Provisional.
Length = 438
Score = 32.6 bits (74), Expect = 0.43
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 31 SFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKK--YGIGMLINSVF 74
+F T + G + S+F++GY + IP GIL KK Y G++
Sbjct: 55 AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 32.2 bits (74), Expect = 0.48
Identities = 49/216 (22%), Positives = 76/216 (35%), Gaps = 36/216 (16%)
Query: 57 FGILAKKYG---------IGMLINSVFAFLVPVAAGHSILA---LSIIRFIQGLGEGPIV 104
FG + G + M I ++ L+P A I A L + R IQG G
Sbjct: 55 FGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEW 114
Query: 105 PCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFS----LPLSGLLSEYGF-AGGW--PSI 157
LA++ PP +R G+F GA G + + L LS LL + GW P +
Sbjct: 115 GGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFL 174
Query: 158 FYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVS 217
++ ++ L EE E +K +A +
Sbjct: 175 VSAVLVLIGLYLRRNL----EETPVFEKAQEKHKKKRGP----IAETLTKHRK------- 219
Query: 218 SLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFN 253
PF L + + + T LPT++ Q L +
Sbjct: 220 --PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLS 253
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 32.2 bits (73), Expect = 0.59
Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 30 GSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAG 83
G F TT + ++S+ + FG+ +YG +++ S A G
Sbjct: 40 GEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPG 99
Query: 84 HSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSG 143
+ + I R + G+G G + A + + P R++ + +G G V +
Sbjct: 100 YITMF--IARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAA-QVY 156
Query: 144 LLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPE 181
L + GW ++F+ ++ ++++ +L E E
Sbjct: 157 SLVVPVWGDGWRALFF-ISILPIIFAL-WLRKNIPEAE 192
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 31.9 bits (72), Expect = 0.87
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 39 QGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSILALSII 92
+G + + G ++ +G LA K G I + +N FAF G+
Sbjct: 204 KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFC-- 261
Query: 93 RFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLS-GLLSEYG-- 149
R + G G G +P + A+++ +R +++ G +++ ++ ++ YG
Sbjct: 262 RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321
Query: 150 FAGGWPSIFY---VFGLVGAVWSVAFLLYCYEEPEA 182
F G F+ VF +V A V + PE+
Sbjct: 322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPES 357
>gnl|CDD|131283 TIGR02228, sigpep_I_arch, signal peptidase I, archaeal type. This
model represents signal peptidase I from most archaea, a
subunit of the eukaryotic endoplasmic reticulum signal
peptidase I complex, and an apparent signal peptidase I
from a small number of bacteria. It is related to but
does not overlap in hits with TIGR02227, the bacterial
and mitochondrial signal peptidase I.
Length = 158
Score = 30.5 bits (69), Expect = 1.1
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 331 IVVVLREDGSVKFLTKGDNNSVDDRGLYAPGQLWLTKNDVVGRARGF-LPYVGMVTIYMN 389
++ + G + F+TKGDNN D + +V+G+ GF +P+ G V ++
Sbjct: 82 VIEINNSGGELGFITKGDNNPAPDGE-------PVPSENVIGKYLGFTIPFAGYVLVFAP 134
Query: 390 E 390
+
Sbjct: 135 Q 135
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 31.2 bits (70), Expect = 1.4
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 79 PVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSR--LGAFVYAGAQFG-- 134
PVA G S LA +++ FI PI+P A LA R+R L Y G F
Sbjct: 229 PVAPGRSPLATTVLDFIHV----PILPLNSAFLAA------RTRQLLEGESYDGGAFAPR 278
Query: 135 ---TVFSLPL-SGLLSEYGFAGGWP-SIFYVFG 162
+ S P+ + L + + P +V+G
Sbjct: 279 SSPSAPSTPVPAADLPDCAYPPPDPKEDAFVYG 311
>gnl|CDD|216153 pfam00854, PTR2, POT family. The POT (proton-dependent
oligopeptide transport) family all appear to be proton
dependent transporters.
Length = 372
Score = 30.7 bits (70), Expect = 1.6
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 13/110 (11%)
Query: 64 YGIGMLINSVFA---FLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTER 120
Y IG ++ ++ A L PV + L +I LG G I P A A T+
Sbjct: 11 YAIGHVLLTLGAIPPSLSPVQVALFYIGLYLI----ALGTGGIKPNVSAFGADQFDETQD 66
Query: 121 SRLGAFV---YAGAQFGTVFSLPLSGLLSE---YGFAGGWPSIFYVFGLV 164
R F Y G++ + ++ L + Y G P++ + L+
Sbjct: 67 PRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFGLPAVGMLLALL 116
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 30.8 bits (70), Expect = 1.6
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 40 GYVLSSFFYGYVLTQIPFGILAKKYGIGMLINS--VFAFLVPVAAGHS---ILALSIIRF 94
G+VL++F G +L + G+L + + L+ L + G + ++ F
Sbjct: 250 GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF 309
Query: 95 IQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSE 147
G+G GPI LL + +P R+ ++ + L L+G L++
Sbjct: 310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362
>gnl|CDD|227921 COG5634, COG5634, Uncharacterized conserved protein [Function
unknown].
Length = 223
Score = 29.9 bits (67), Expect = 2.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 357 LYAPGQLWLTKNDVVGRARGFLPYVGMVTIYMNE---YPKFKSPPVPWKD 403
LY G +N V + GFLP G+ I+MN+ K K W+D
Sbjct: 130 LYYFGGNGGPENRVYDKGFGFLPKNGLHEIHMNQGNARGKHKKDNGAWQD 179
>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor
family. Included in this family of heterogeneous
ribonucleoproteins are PTB (polypyrimidine tract binding
protein ) and hnRNP-L. These proteins contain four RNA
recognition motifs (rrm: pfam00067).
Length = 481
Score = 29.8 bits (67), Expect = 3.1
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 101 GPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFG-TVFSLPLSGLLSEYGFAGGWPS--- 156
+ P R+G +++ + PL+ +S YG AGG P
Sbjct: 219 SYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVL 278
Query: 157 --------------IFYVFGLVGAVWSVAFL 173
+F +F + G V V F+
Sbjct: 279 MVSGLHQEKVNCDRLFNLFCVYGNVERVKFM 309
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 29.9 bits (68), Expect = 3.5
Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 72 SVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSR-LGAFVYAG 130
S+ FL ++ L + GL IVP A L W P R+R + A
Sbjct: 324 SILVFLSKRHGWRILIDLFGLAAAGGLY---IVP-LFAALQAWANPAHRARVIAANNVLN 379
Query: 131 AQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGL--VGAVWSVAFLL 174
A F ++ L+ L + GF+ W I L + + LL
Sbjct: 380 AAFMVAGTIILALLQAL-GFSIPW--IILFIALANLIVAILILRLL 422
>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter
(Peptide:H+ symporter), bacterial. The model describes
proton-dependent oligopeptide transporters in bacteria.
This model is restricted in its range in recognizing
bacterial proton-dependent oligopeptide transporters,
although they are found in yeast, plants and animals.
They function by proton symport in a 1:1 stoichiometry,
which is variable in different species. All of them are
predicted to contain 12 transmembrane domains, for which
limited experimental evidence exists [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 475
Score = 29.4 bits (66), Expect = 3.9
Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 12/121 (9%)
Query: 63 KYGIGMLIN--SVFAFLVPV---AAGH--SILALSIIRFIQGLGEGPIVPCTHALLAKWI 115
K+ +GML S F + AG S + +I Q LGE I P + K
Sbjct: 351 KFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIA 410
Query: 116 PPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGF-AGGWPSIFYVFGLVGAVWSVAFLL 174
P ++ + G++ L G L+ +G G +F GLV + V L
Sbjct: 411 PQRLMGQMLGMWFLAQAMGSL----LGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL 466
Query: 175 Y 175
Sbjct: 467 M 467
>gnl|CDD|226125 COG3597, COG3597, Uncharacterized protein/domain associated with
GTPases [Function unknown].
Length = 139
Score = 28.3 bits (63), Expect = 4.1
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 191 RKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYG 234
R+YI S+ +A ++ P+P+ D++ P A ++ +G+ YG
Sbjct: 3 REYIHSAS-LMAAAVAAVPIPFADMLLLTPIQASMVYLLGKIYG 45
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 29.5 bits (67), Expect = 4.2
Identities = 29/206 (14%), Positives = 61/206 (29%), Gaps = 35/206 (16%)
Query: 117 PTERSRLGAFVYAGAQFG----TVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAF 172
P ER+ L ++ GA G V + PL LL A G+ + ++ V +
Sbjct: 132 PKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGGNGAKGYFLAALIIAILAVVGFLIC 191
Query: 173 LLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQN 232
E P E S+ + +K + + P +L+ ++
Sbjct: 192 FAGTKERVSVPPEQKE------KVSLRDM----------FKALFKNRPLLILLLLYLLNA 235
Query: 233 YGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIADSMITSEKFSHTS 292
L + VL L + +A + + ++A
Sbjct: 236 LAMAVRNGLLLYYFTYVLGNAGLF-SVLLLIGTIAAILGAPLWPWLA------------- 281
Query: 293 TRKIINAFLYQVLSFGMIVSSALMIW 318
++ + + + L+ +
Sbjct: 282 -KRFGKKRTFLLGMLLAAIGLVLLFF 306
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 29.2 bits (66), Expect = 4.9
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 177 YEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWAI 224
Y+ P I E+E Y++ +V +PP+ +DI+S+ + +
Sbjct: 291 YDGDPEDPRITEEEIDYLLDAV----NRYLAPPLTREDILST--YAGV 332
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 28.7 bits (65), Expect = 6.4
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 35 TTAEQ-GYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSIL 87
T+A LS F G+ L Q+ +G L+ +YG G+ + ++ + + S
Sbjct: 38 TSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGM--LWVESAA 95
Query: 88 ALSIIRFIQGLG 99
L ++RF+Q +G
Sbjct: 96 QLLVLRFVQAVG 107
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 29.0 bits (66), Expect = 6.4
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 123 LGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVA 171
+ A A + ++GL YG + GW I GL+ A
Sbjct: 41 VLALTLAATNISAGSFVGVAGLAYTYGISAGWYVIGAALGLLLLALFFA 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.434
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,894,090
Number of extensions: 2401350
Number of successful extensions: 3377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3312
Number of HSP's successfully gapped: 147
Length of query: 455
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 355
Effective length of database: 6,502,202
Effective search space: 2308281710
Effective search space used: 2308281710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (27.2 bits)