RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3467
(455 letters)
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 149 bits (379), Expect = 1e-40
Identities = 40/301 (13%), Positives = 105/301 (34%), Gaps = 13/301 (4%)
Query: 34 WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAG--HS 85
++ + G+ LS Y ++ G ++ + G+++ + + S
Sbjct: 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 118
Query: 86 ILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLL 145
I + ++ F+ G +G P + W ER + + G L L
Sbjct: 119 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178
Query: 146 SEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAH--PNIAEDERKYIMSSVWGLAG 203
+ W + Y+ + ++ + P++ P I E + Y
Sbjct: 179 --MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ 236
Query: 204 VASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSAL 263
++ + + ++ + W I IA++ ++ PT++K+V HF + ++ L
Sbjct: 237 ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFL 296
Query: 264 PYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMV 323
A ++ +++D + T + + ++ + + + ++V
Sbjct: 297 YEYAGIPGTLLCGWMSDKVFRG-NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV 355
Query: 324 L 324
+
Sbjct: 356 I 356
Score = 30.0 bits (68), Expect = 1.6
Identities = 10/58 (17%), Positives = 26/58 (44%)
Query: 392 PKFKSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKEHGSV 449
+ + + + ++ + W I IA++ ++ PT++K+V HF + +
Sbjct: 236 QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWA 293
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 46.1 bits (110), Expect = 1e-05
Identities = 48/305 (15%), Positives = 97/305 (31%), Gaps = 59/305 (19%)
Query: 42 VLSSFFYGYVLTQIPFGILAKKYG------IGMLI---NSVFAFLVPVAAGHSILALSII 92
V+ ++ Y ++Q+ +G ++ + G +GM I ++ A S+ L
Sbjct: 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-----SLTVLIAA 94
Query: 93 RFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAG 152
+QG+G G L T+ + + G + + + GLL
Sbjct: 95 SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW--- 151
Query: 153 GWPSIFYVFGLVGAV--WSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPV 210
W + + ++ A +S+A + PE P + R +++S L
Sbjct: 152 NWRACYLFLLVLCAGVTFSMARWM-----PETRP--VDAPRTRLLTSYKTL--------- 195
Query: 211 PWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWI 270
+ F L+ +G G M VL + L LP A +
Sbjct: 196 -----FGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFF 250
Query: 271 FSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLTGSESP 330
+ FA +FS ++ +I + + G +
Sbjct: 251 GAWFAGRPNK------RFS-------------TLMWQSVICCLLAGLLMWIPDWFGVMNV 291
Query: 331 IVVVL 335
+++
Sbjct: 292 WTLLV 296
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.012
Identities = 65/385 (16%), Positives = 112/385 (29%), Gaps = 126/385 (32%)
Query: 35 TTAEQGYVLSSFFYGYVLTQIPFGILAKKYGIGMLINSVFAFLVPVAAGH-SILALSIIR 93
T + ++ ++ ++ + PF + NS A V G+ ++A+
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKS---------NS--ALFRAVGEGNAQLVAI---- 159
Query: 94 FIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGG 153
F G G+G L + T +G + A+ LS L+ A
Sbjct: 160 F--G-GQGNTDDYFEELRDLY--QTYHVLVGDLIKFSAET-------LSELIRTTLDA-- 205
Query: 154 WPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWK 213
+ GL W L E P P+ Y++S P+
Sbjct: 206 --EKVFTQGLNILEW----L----ENPSNTPDKD-----YLLSI-----------PI--- 236
Query: 214 DIVSSLPFWAIL-IAH---MGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMW 269
S P ++ +AH + G+ P ++ L G L
Sbjct: 237 ----SCPLIGVIQLAHYVVTAKLLGFT------PGELRSYLK------GATGHSQGLVT- 279
Query: 270 IFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVL----SFGMIVSSALMIWKGLMVLT 325
A IA++ + E F S RK I + + ++ ++ L
Sbjct: 280 -----AVAIAETD-SWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 326 GSESPIVVVLREDGSVKFLTKGDNNSVDDRGLYAPGQLWLTKNDVVGRARGFLPYVGMVT 385
G SP++ + L Q+ D V + LP V
Sbjct: 333 GVPSPMLSI--------------------SNL-TQEQV----QDYVNKTNSHLPAGKQVE 367
Query: 386 IYM-NEYPKFKSPPVPWKDIVSSLP 409
I + N +VS P
Sbjct: 368 ISLVNGAKNL---------VVSGPP 383
Score = 36.2 bits (83), Expect = 0.029
Identities = 43/220 (19%), Positives = 71/220 (32%), Gaps = 86/220 (39%)
Query: 195 MSSVWGLAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETL--MTELPTFMKQVLHF 252
M G+ +S +D+ W H YG+ L + P +HF
Sbjct: 1631 M----GMDLYKTSKAA--QDV------WNRADNHFKDTYGFSILDIVINNPV--NLTIHF 1676
Query: 253 N------IKENGTLSALPYLAMWIFSMFASFIADSMITSEK-------------FSH--- 290
I+EN Y AM +F + D + +EK F
Sbjct: 1677 GGEKGKRIREN-------YSAM----IFETI-VDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 291 --TSTRKIINA----FL-----YQVL-SFGMIVS------------SALMIWKGLMVLTG 326
++T+ L ++ L S G+I + +AL +M +
Sbjct: 1725 LLSATQ---FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI-- 1779
Query: 327 SESPI-VVVLREDGS-VKFLTKGDNNSVDDRGLYA--PGQ 362
ES + VV R G ++ D + G+ A PG+
Sbjct: 1780 -ESLVEVVFYR--GMTMQVAVPRDELGRSNYGMIAINPGR 1816
Score = 34.6 bits (79), Expect = 0.079
Identities = 89/459 (19%), Positives = 142/459 (30%), Gaps = 153/459 (33%)
Query: 8 AYSIFVSRVINTKLTRRVHHKDGSFIWTTAEQG----YVLSSFFYGYVLTQIPFGILAKK 63
Y +R++ R K S ++ +G + F G T F L
Sbjct: 125 NY--ITARIM---AKRPFDKKSNSALFRAVGEGNAQLVAI---FGGQGNTDDYFEELRDL 176
Query: 64 YG-----IGMLINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWI--- 115
Y +G LI L + ++ A + F QGL + +W+
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIR-TTLDAEKV--FTQGLN-----------ILEWLENP 222
Query: 116 ---PPTERSRLGAFVYAGAQFGTVFSLPLSGL--LSEYGFA---GGW-PSIFY------- 159
P + + S PL G+ L+ Y G+ P
Sbjct: 223 SNTPDKD-----YLLSIP------ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 160 --VFGLVGAV-------WS---------VAFLLYC-YEEPEAHPNIAEDERKYIMSSVWG 200
GLV AV W + L + EA+PN + + S+
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP-SILEDSLEN 330
Query: 201 LAGVAS---SPPVPWKDIVSSLPFWAILIAHMGQ-NYGYETLMTELPTFMKQVLH---FN 253
GV S S +S+L + ++ + N + LP + + N
Sbjct: 331 NEGVPSPMLS--------ISNLTQ-EQVQDYVNKTN-------SHLPA--GKQVEISLVN 372
Query: 254 IKEN----GTLSALPYLAMWIFSMFASFIAD-SMIT-SE---KFS----------HTS-- 292
+N G +L L + + A D S I SE KFS H+
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 293 ---TRKIINAFLYQVLSFGMIVSSALMI-------WKGLMVLTGSESPIVV--VLREDGS 340
+ I + +SF + + I L VL+GS S +V ++R
Sbjct: 433 VPASDLINKDLVKNNVSFN---AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL--P 487
Query: 341 VKF--LTKGDNNSVDDRGLYAPGQLW----LTKNDVVGR 373
VK+ T+ + D G PG LT + G
Sbjct: 488 VKWETTTQFKATHILDFG---PGGASGLGVLTHRNKDGT 523
Score = 33.1 bits (75), Expect = 0.23
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 29/91 (31%)
Query: 15 RVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQI--PFGILAKKYGIGMLINS 72
++ K+ + ++ S+ + +E+G +LS TQ P + + + S
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFR-SEKG-LLS-------ATQFTQP-ALTLMEKAAFEDLKS 1749
Query: 73 VFAFLVP---VAAGHSILALSIIRFIQGLGE 100
L+P AGHS LGE
Sbjct: 1750 --KGLIPADATFAGHS------------LGE 1766
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
transport, major facilitator SUPE transporter, MFS;
3.30A {Streptococcus thermophilus}
Length = 491
Score = 35.1 bits (81), Expect = 0.040
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 11/120 (9%)
Query: 63 KYGIGMLINSV-FAFLVPVAAGH------SILALSIIRFIQGLGEGPIVPCTHALLAKWI 115
K+ +G++ + F + A + S L L + LGE I P ++ K
Sbjct: 356 KFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLA 415
Query: 116 PPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLY 175
P S++ + + + G+ L+ L A + F FGL V + +
Sbjct: 416 PKAFNSQMMSMWFLSSSVGSA----LNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFL 471
Score = 35.1 bits (81), Expect = 0.048
Identities = 36/192 (18%), Positives = 63/192 (32%), Gaps = 14/192 (7%)
Query: 26 HHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYGIGMLINSVFAFLVPVAAGHS 85
G T A +++ + L+ G +A + IG +VF V + GH
Sbjct: 43 LISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRI-IGA-RPAVFWGGVLIMLGHI 100
Query: 86 ILALS--IIRFIQGL-----GEGPIVPCTHALLAKWIPPTERSRLGAFV--YAGAQFGTV 136
+LAL + G G + P L+ +R R F G G
Sbjct: 101 VLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF 160
Query: 137 FSLPLSGLLSE-YGFAGGW--PSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKY 193
+ + G E G+ + +I GL+ + L + P E+ +
Sbjct: 161 IAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPL 220
Query: 194 IMSSVWGLAGVA 205
++ +AG
Sbjct: 221 LVKVSLAVAGFI 232
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 34.1 bits (78), Expect = 0.098
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 31 SFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFL-VPVAAG 83
+F T + G + S+F++GY + IP GIL KK G+ + ++ A L P A
Sbjct: 55 AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI 114
Query: 84 HSILALSIIRFIQGLG 99
+ + FI G
Sbjct: 115 MNYTLFLVGLFIIAAG 130
>2xut_A Proton/peptide symporter family protein; transport protein,
membrane protein, major facilitator super transporter;
3.62A {Shewanella oneidensis}
Length = 524
Score = 32.3 bits (74), Expect = 0.38
Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 17/130 (13%)
Query: 62 KKYGIGMLINSVFAFLVPVAAGH--------SILALSIIRFIQGLGEGPIVPCTHALLAK 113
+K G G+ I + +++V SI + + GE +
Sbjct: 374 RKMGAGIAI-TGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYS 432
Query: 114 WIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSEYGFAGGWPSI--------FYVFGLVG 165
P + + +F G ++ L + + + F
Sbjct: 433 QAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFA 492
Query: 166 AVWSVAFLLY 175
+ ++ F LY
Sbjct: 493 ILAAIVFALY 502
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 31.4 bits (71), Expect = 0.59
Identities = 12/105 (11%), Positives = 36/105 (34%)
Query: 220 PFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLAMWIFSMFASFIA 279
FW + + P ++ + H + + G + A L +F ++
Sbjct: 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLS 67
Query: 280 DSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVL 324
D + + T ++ + + FG ++ +++ + +
Sbjct: 68 DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI 112
Score = 31.1 bits (70), Expect = 0.73
Identities = 27/214 (12%), Positives = 64/214 (29%), Gaps = 19/214 (8%)
Query: 34 WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG----------IGMLINSVFAFLV--PVA 81
+ ++ G + ++ +L Q FG+L+ K G +++ + F + P+
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99
Query: 82 AGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPL 141
+ ++ + G P A + K SR F + A+ L
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV------SRRSNFEFGRARMFGCVGWAL 153
Query: 142 SGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGL 201
+ F +F++ + +V + P + + S+
Sbjct: 154 GASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLA 213
Query: 202 AGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGY 235
+ P + W + + Q +
Sbjct: 214 LELFRQPKL-WFLSLYVIGVSCTYDVFDQQFANF 246
>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease,
caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus}
SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A*
Length = 329
Score = 31.2 bits (70), Expect = 0.68
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 307 FGMIVSSALM-IWKGLMVLTGSESPIVVVLREDGSV----KFLTKGDNNSVDDRGLYAPG 361
FG+ S + KG + + L EDG+ F ++ + L G
Sbjct: 22 FGVAARSCQELLRKGCVRFQLPMPGSRLCLYEDGTEVTDDCFPGLPNDAELL---LLTAG 78
Query: 362 QLWLTKNDVVGRA 374
+ W + R
Sbjct: 79 ETWHGYVSDITRF 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 1.1
Identities = 47/334 (14%), Positives = 93/334 (27%), Gaps = 107/334 (32%)
Query: 167 VWSV----AFLLYC--------------------YEEPEAHPNIA--EDERKYIMSSVWG 200
V + AF L C H ++ DE K ++
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 201 LAGVASSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKE---- 256
P +++++ P +IA + + H N +
Sbjct: 313 CR-PQDLPR----EVLTTNPRRLSIIA---------ESIRDGLATWDNWKHVNCDKLTTI 358
Query: 257 -NGTLSAL-PYLAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSA 314
+L+ L P +F + F + I + +LS
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-----------------ILLS-------- 393
Query: 315 LMIWKGLMVLTGSESPIVVVLREDGSVKFLTKGDNNSVDDRGLYAPGQLWLTK----NDV 370
+IW + S+ +VV S L + + + P K N+
Sbjct: 394 -LIWFD---VIKSDVMVVVNKLHKYS---LVEKQPK---ESTISIPSIYLELKVKLENEY 443
Query: 371 VGRARGFLPYVGMVTIY--MNEYPKFKSPPVPWKDIVSSLPFWAILIA-HM--GQNYGYE 425
+V Y + P P+ D ++ I H+ ++
Sbjct: 444 ALHRS-------IVDHYNIPKTFDSDDLIP-PYLD-----QYFYSHIGHHLKNIEHPERM 490
Query: 426 TLMTELPT---FMKQ-VLHFNIKEHGSVRVTSSL 455
TL + F++Q + H + + S + ++L
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 29.6 bits (66), Expect = 2.2
Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 2/101 (1%)
Query: 98 LGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLP--LSGLLSEYGFAGGWP 155
+ E + P + + L A + P L+ + + +
Sbjct: 157 VAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAG 216
Query: 156 SIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMS 196
+I L A W +A E + ++ + + + +
Sbjct: 217 TIVEDPTLDDAHWEIATTNALLTELKLSTDLRDRVKPLLEA 257
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.5
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 7/25 (28%)
Query: 337 EDGSVKFLTKGDNNSVDDRGLYAPG 361
E ++K L S+ LYA
Sbjct: 18 EKQALKKLQ----ASLK---LYADD 35
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 28.4 bits (64), Expect = 6.3
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 177 YEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFWA 223
Y++ A P + ++R YI+++ + S + D+ SS WA
Sbjct: 297 YDKDIASPRMTVEDRDYILAAA---NYMFPSLRLTADDVESS---WA 337
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.434
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,100,505
Number of extensions: 434278
Number of successful extensions: 1258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1251
Number of HSP's successfully gapped: 28
Length of query: 455
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 358
Effective length of database: 3,993,456
Effective search space: 1429657248
Effective search space used: 1429657248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (26.6 bits)