RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3467
         (455 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 72.8 bits (177), Expect = 2e-14
 Identities = 39/309 (12%), Positives = 102/309 (33%), Gaps = 8/309 (2%)

Query: 34  WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFL--VPVAAGHS 85
           ++  + G+ LS     Y  ++   G ++ +         G+++ +           A  S
Sbjct: 56  FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115

Query: 86  ILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLL 145
           I  + ++ F+ G  +G   P     +  W    ER  + +        G      L  L 
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175

Query: 146 SEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVA 205
             +            F  +        ++    +    P I E +  Y            
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235

Query: 206 SSPPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPY 265
           ++  +  + ++ +   W I IA++        ++   PT++K+V HF + ++     L  
Sbjct: 236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 295

Query: 266 LAMWIFSMFASFIADSMITSEKFSHTSTRKIINAFLYQVLSFGMIVSSALMIWKGLMVLT 325
            A    ++   +++D +    + +       +      V       +  + +   +++  
Sbjct: 296 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 355

Query: 326 GSESPIVVV 334
               P++++
Sbjct: 356 LIYGPVMLI 364



 Score = 34.3 bits (77), Expect = 0.029
 Identities = 22/182 (12%), Positives = 50/182 (27%), Gaps = 4/182 (2%)

Query: 9   YSIFVSRVINTKLTRRVHHKDGSFIWTTAEQGYVLSSFFYGYVLTQIPFGILAKKYGIGM 68
           Y I        K  +       S+ +   E   +  +   G++  ++  G         M
Sbjct: 266 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM 325

Query: 69  LINSVFAFLVPVAAGHSILALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVY 128
            + ++   +  +    +     I   + G      V        +  P         F  
Sbjct: 326 TLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 385

Query: 129 AGAQF-GTVFSLPLSGLLSEYGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIA 187
                 G+V +  + G   +     GW   F V      +  +  ++    E   H  + 
Sbjct: 386 LFGYLGGSVAASAIVGYTVD---FFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLL 442

Query: 188 ED 189
           ++
Sbjct: 443 QE 444


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 26/247 (10%), Positives = 67/247 (27%), Gaps = 6/247 (2%)

Query: 34  WTTAEQGYVLSSFFYGYVLTQIPFGILAKKYG------IGMLINSVFAFLVPVAAGHSIL 87
            + ++ G + ++     +L Q  FG+L+ K G        +    V      +     +L
Sbjct: 40  ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99

Query: 88  ALSIIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYAGAQFGTVFSLPLSGLLSE 147
             +I+      G            A      + SR   F +  A+        L   +  
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159

Query: 148 YGFAGGWPSIFYVFGLVGAVWSVAFLLYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASS 207
             F      +F++      + +V       + P +          +   S+     +   
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQ 219

Query: 208 PPVPWKDIVSSLPFWAILIAHMGQNYGYETLMTELPTFMKQVLHFNIKENGTLSALPYLA 267
           P + +  +          +        + +         +   +         +++ + A
Sbjct: 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFA 279

Query: 268 MWIFSMF 274
             I +  
Sbjct: 280 PLIINRI 286



 Score = 34.7 bits (78), Expect = 0.019
 Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 91  IIRFIQGLGEGPIVPCTHALLAKWIPPTERSRLGAFVYA-GAQFGTVFSLPLSGLLSEYG 149
           I++ +       ++      +         + +    +    Q   +F   L+G + E  
Sbjct: 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-- 374

Query: 150 FAGGWPSIFYVFGLVGAVWSVAFLLY 175
            + G+   + V GLV   +++  +  
Sbjct: 375 -SIGFQGAYLVLGLVALGFTLISVFT 399


>d1q32a1 d.136.1.3 (A:79-293) Tyrosyl-DNA phosphodiesterase TDP1
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 215

 Score = 26.7 bits (59), Expect = 4.4
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 174 LYCYEEPEAHPNIAEDERKYIMSSVWGLAGVASSPPVPWKDIVSSLPFW 222
           L  Y   +    I +   +   + +  L  V S    P K   S L  +
Sbjct: 163 LNSYHLKDIDELITKSVEEVNFAPLSELEFVYS---TPSKFQSSGLLSF 208


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,711,677
Number of extensions: 79262
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 8
Length of query: 455
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 367
Effective length of database: 1,199,356
Effective search space: 440163652
Effective search space used: 440163652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.0 bits)