BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3468
(68 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9R1P0|PSA4_MOUSE Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1
Length = 261
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 52/61 (85%), Gaps = 2/61 (3%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
M CSVAGITSDANVLT+ELR IAQRYL+QY EPIPCEQLV LCDIKQ YTQ+GG+ P
Sbjct: 72 MACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKR--P 129
Query: 61 F 61
F
Sbjct: 130 F 130
>sp|P21670|PSA4_RAT Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1
SV=1
Length = 261
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 52/61 (85%), Gaps = 2/61 (3%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
M CSVAGITSDANVLT+ELR IAQRYL+QY EPIPCEQLV LCDIKQ YTQ+GG+ P
Sbjct: 72 MACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKR--P 129
Query: 61 F 61
F
Sbjct: 130 F 130
>sp|P25789|PSA4_HUMAN Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1
Length = 261
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 52/61 (85%), Gaps = 2/61 (3%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
M CSVAGITSDANVLT+ELR IAQRYL+QY EPIPCEQLV LCDIKQ YTQ+GG+ P
Sbjct: 72 MACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKR--P 129
Query: 61 F 61
F
Sbjct: 130 F 130
>sp|Q3ZCK9|PSA4_BOVIN Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1
Length = 261
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 52/61 (85%), Gaps = 2/61 (3%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
M CSVAGITSDANVLT+ELR IAQRYL+QY EPIPCEQLV LCDIKQ YTQ+GG+ P
Sbjct: 72 MACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKR--P 129
Query: 61 F 61
F
Sbjct: 130 F 130
>sp|Q4R932|PSA4_MACFA Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4
PE=2 SV=1
Length = 261
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 52/61 (85%), Gaps = 2/61 (3%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
M CSVAGITSDANVLT+ELR IAQRYL+QY EPIPCEQLV LCDIKQ YTQ+GG+ P
Sbjct: 72 MACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKR--P 129
Query: 61 F 61
F
Sbjct: 130 F 130
>sp|P18053|PSA4_DROME Proteasome subunit alpha type-4 OS=Drosophila melanogaster
GN=Pros29 PE=1 SV=2
Length = 264
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 50/61 (81%), Gaps = 2/61 (3%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
MVCSVAGITSDANVLTSELR IAQRY Y E IPCEQLV+ LCDIKQ YTQYGG+ P
Sbjct: 72 MVCSVAGITSDANVLTSELRLIAQRYQFSYGEVIPCEQLVSHLCDIKQAYTQYGGKR--P 129
Query: 61 F 61
F
Sbjct: 130 F 130
>sp|P34119|PSA4_DICDI Proteasome subunit alpha type-4 OS=Dictyostelium discoideum
GN=psmA4 PE=2 SV=1
Length = 250
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/55 (63%), Positives = 44/55 (80%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+VC+VAGITSDAN+L + R +QR+ QY EP+P EQLV+ +CD KQGYTQYGG
Sbjct: 73 VVCAVAGITSDANILINYARLSSQRFFYQYQEPMPVEQLVSQICDTKQGYTQYGG 127
>sp|Q09682|PSA3_SCHPO Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC13C5.01c PE=3
SV=1
Length = 248
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 48/61 (78%), Gaps = 2/61 (3%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
M+C+VAG+T+DAN+L + R + Q+YL +NE +PCEQLV +CD+KQGYTQYGG + P
Sbjct: 72 MLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGG--LRP 129
Query: 61 F 61
F
Sbjct: 130 F 130
>sp|Q5VRG3|PSA4B_ORYSJ Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica
GN=Os06g0167600 PE=2 SV=1
Length = 250
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/55 (63%), Positives = 41/55 (74%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ C+VAGI SDAN+L + R AQRY + Y EPIP EQLV LCD KQGYTQ+GG
Sbjct: 72 LACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGG 126
>sp|P0C8Y9|PSA4B_ORYSI Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica
GN=OsI_021067 PE=1 SV=1
Length = 250
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/55 (63%), Positives = 41/55 (74%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ C+VAGI SDAN+L + R AQRY + Y EPIP EQLV LCD KQGYTQ+GG
Sbjct: 72 LACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGG 126
>sp|P0C1G8|PSA4A_ORYSJ Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica
GN=PAC1 PE=2 SV=1
Length = 250
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/55 (63%), Positives = 41/55 (74%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ C+VAGI SDAN+L + R AQRY + Y EPIP EQLV LCD KQGYTQ+GG
Sbjct: 72 LACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGG 126
>sp|A2Y9X7|PSA4A_ORYSI Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica
GN=OsI_021120 PE=1 SV=2
Length = 250
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/55 (63%), Positives = 41/55 (74%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ C+VAGI SDAN+L + R AQRY + Y EPIP EQLV LCD KQGYTQ+GG
Sbjct: 72 LACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGG 126
>sp|O82530|PSA4_PETHY Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2
SV=1
Length = 249
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/55 (63%), Positives = 40/55 (72%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ C+VAGI SDAN+L + R AQRY Y EP+P EQLV LCD KQGYTQYGG
Sbjct: 72 VACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQYGG 126
>sp|O81148|PSA4_ARATH Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1
PE=1 SV=1
Length = 250
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/55 (61%), Positives = 40/55 (72%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ C+VAGI SDAN+L + R AQRY Y EP+P EQLV LCD KQGYTQ+GG
Sbjct: 72 VACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGG 126
>sp|P52427|PSA4_SPIOL Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2
SV=1
Length = 250
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/55 (61%), Positives = 40/55 (72%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ C+VAGI SDAN+L + R AQRY Y EP+P EQLV LCD KQGYTQ+GG
Sbjct: 72 VACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGG 126
>sp|Q9VA12|PSA4L_DROME Proteasome subunit alpha type-4-like OS=Drosophila melanogaster
GN=Prosalpha3T PE=2 SV=1
Length = 251
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
+ C G T+D NVL ++LR IAQ+Y + E IPCEQLV LCDIKQ YTQYGG+ P
Sbjct: 71 IACCATGNTADGNVLVNQLRMIAQQYQFNFGEMIPCEQLVTNLCDIKQAYTQYGGKR--P 128
Query: 61 F 61
F
Sbjct: 129 F 129
>sp|P23638|PSA3_YEAST Proteasome subunit alpha type-3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE9 PE=1 SV=1
Length = 258
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/61 (54%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
+ +VAG+T+DA +L + R AQ YL YNE IP E LV L DIKQGYTQ+GG + P
Sbjct: 73 IAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGG--LRP 130
Query: 61 F 61
F
Sbjct: 131 F 131
>sp|Q9N599|PSA4_CAEEL Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3
PE=3 SV=2
Length = 250
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/59 (54%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 CSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
C+VAGIT+DAN+L + LR A Y Y E +P EQLV LC+ KQ YTQ GG+ PF
Sbjct: 74 CTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKR--PF 130
>sp|B6YSH9|PSA_THEON Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1)
GN=psmA PE=3 SV=1
Length = 260
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 6 AGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+GI +DA VL R AQ Y + Y EP+P LV +CD+KQ +TQYGG + PF
Sbjct: 81 SGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGG--VRPF 134
>sp|O24733|PSA_THEK1 Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA
PE=3 SV=1
Length = 260
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 6 AGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+GI +DA VL R AQ Y + Y EP+P LV +CD+KQ +TQYGG + PF
Sbjct: 81 SGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGG--VRPF 134
>sp|C5A2C2|PSA_THEGJ Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1
Length = 260
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 6 AGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+GI +DA VL R AQ Y + Y EP+P LV +CD+KQ +TQYGG + PF
Sbjct: 81 SGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGG--VRPF 134
>sp|Q5JIU9|PSA_PYRKO Proteasome subunit alpha OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmA PE=3 SV=1
Length = 260
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 6 AGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+GI +DA VL R AQ Y + Y EP+P LV +CD+KQ +TQYGG + PF
Sbjct: 81 SGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGG--VRPF 134
>sp|C6A459|PSA_THESM Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=psmA PE=3 SV=1
Length = 260
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 6 AGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+GI +DA VL R AQ Y + Y EP+P LV +CD+KQ +TQYGG + PF
Sbjct: 81 SGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGG--VRPF 134
>sp|Q8TYB7|PSA_METKA Proteasome subunit alpha OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=psmA PE=3 SV=1
Length = 246
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 4 SVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+ AG+ +DA VL R AQ Y Y EPI + LV +CD+KQ YTQ+GG + PF
Sbjct: 79 ATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGG--VRPF 134
>sp|Q8U0L6|PSA_PYRFU Proteasome subunit alpha OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmA PE=3 SV=1
Length = 260
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 6 AGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+GI +DA VL + R AQ Y + Y EP P +V +CD+KQ +TQYGG + PF
Sbjct: 81 SGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGG--VRPF 134
>sp|Q60177|PSA_METJA Proteasome subunit alpha OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmA PE=1 SV=1
Length = 261
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
+ + +G+ +DA VL R AQ Y + Y E I E L +CDIKQ YTQ+GG + P
Sbjct: 75 VAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGG--VRP 132
Query: 61 F 61
F
Sbjct: 133 F 133
>sp|Q4JB24|PSA_SULAC Proteasome subunit alpha OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=psmA PE=3 SV=1
Length = 242
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 3 CSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
C+ AG+ SD +L R+ A ++ + Y+EPI E L + D+KQ YTQ+GG + PF
Sbjct: 78 CTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYTQHGG--VRPF 134
>sp|Q9UXC6|PSA_SULSO Proteasome subunit alpha OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=psmA PE=3 SV=1
Length = 241
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 3 CSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
CS AG+ SD VL R IA ++ + Y+EP+ + L + D+KQ YTQ+GG + PF
Sbjct: 78 CSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGG--VRPF 134
>sp|C3NEC6|PSA_SULIY Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14
/ Yellowstone #1) GN=psmA PE=3 SV=1
Length = 241
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 3 CSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
CS AG+ SD VL R IA ++ + Y+EP+ + L + D+KQ YTQ+GG + PF
Sbjct: 78 CSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGG--VRPF 134
>sp|C3NHC6|PSA_SULIN Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51
/ Yellowstone #2) GN=psmA PE=3 SV=1
Length = 241
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 3 CSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
CS AG+ SD VL R IA ++ + Y+EP+ + L + D+KQ YTQ+GG + PF
Sbjct: 78 CSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGG--VRPF 134
>sp|C3MVG1|PSA_SULIM Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=psmA PE=3 SV=1
Length = 241
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 3 CSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
CS AG+ SD VL R IA ++ + Y+EP+ + L + D+KQ YTQ+GG + PF
Sbjct: 78 CSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGG--VRPF 134
>sp|C3MQ43|PSA_SULIL Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=psmA PE=3 SV=1
Length = 241
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 3 CSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
CS AG+ SD VL R IA ++ + Y+EP+ + L + D+KQ YTQ+GG + PF
Sbjct: 78 CSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGG--VRPF 134
>sp|C4KHD9|PSA_SULIK Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=psmA PE=3 SV=1
Length = 241
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 3 CSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
CS AG+ SD VL R IA ++ + Y+EP+ + L + D+KQ YTQ+GG + PF
Sbjct: 78 CSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGG--VRPF 134
>sp|C3N5R0|PSA_SULIA Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27)
GN=psmA PE=3 SV=1
Length = 241
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 3 CSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
CS AG+ SD VL R IA ++ + Y+EP+ + L + D+KQ YTQ+GG + PF
Sbjct: 78 CSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGG--VRPF 134
>sp|O29760|PSA_ARCFU Proteasome subunit alpha OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmA PE=1 SV=1
Length = 246
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 2 VCS-VAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
+C+ +G+ +DA VL R AQ + Y+EPI ++L +CD KQ YTQYGG + P
Sbjct: 74 ICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGG--VRP 131
Query: 61 F 61
F
Sbjct: 132 F 132
>sp|A6VIP0|PSA_METM7 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=psmA PE=3 SV=1
Length = 259
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+V + +G+ +DA VL R AQ I Y E I E L +CDIKQ YTQ+GG
Sbjct: 76 IVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGG 130
>sp|A4FZT6|PSA_METM5 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=psmA PE=3 SV=1
Length = 259
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+V + +G+ +DA VL R AQ I Y E I E L +CDIKQ YTQ+GG
Sbjct: 76 IVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGG 130
>sp|A9A846|PSA_METM6 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=psmA PE=3 SV=1
Length = 259
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+V + +G+ +DA VL R AQ I Y E I E L +CDIKQ YTQ+GG
Sbjct: 76 IVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGG 130
>sp|Q9V122|PSA_PYRAB Proteasome subunit alpha OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmA PE=3 SV=1
Length = 260
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 6 AGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+GI +DA VL + R AQ + + Y EP P +V +CD+KQ +TQYGG + PF
Sbjct: 81 SGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGG--VRPF 134
>sp|O59219|PSA_PYRHO Proteasome subunit alpha OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmA PE=3 SV=1
Length = 260
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 6 AGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+GI +DA VL + R AQ + + Y EP P +V +CD+KQ +TQYGG + PF
Sbjct: 81 SGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGG--VRPF 134
>sp|Q6M0L9|PSA_METMP Proteasome subunit alpha OS=Methanococcus maripaludis (strain S2 /
LL) GN=psmA PE=3 SV=1
Length = 259
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+V + +G+ +DA VL R AQ + Y E I E L +CDIKQ YTQ+GG
Sbjct: 76 IVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGG 130
>sp|O26782|PSA_METTH Proteasome subunit alpha OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=psmA PE=3 SV=1
Length = 248
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 4 SVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+ +G+ +DA + + R AQ I YNEPI E L +CD+KQ YTQ+GG + PF
Sbjct: 78 ATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGG--VRPF 133
>sp|Q975G5|PSA_SULTO Proteasome subunit alpha OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=psmA PE=3 SV=2
Length = 242
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 3 CSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
CS AG+ SD +L R+ A ++ + Y+EPI + L + D+KQ YTQ+GG + PF
Sbjct: 78 CSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGG--VRPF 134
>sp|A6URN9|PSA_METVS Proteasome subunit alpha OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1
Length = 259
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+V + +G+ +DA VL R AQ I Y E I E L +CDIKQ YT +GG
Sbjct: 76 IVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYTHHGG 130
>sp|A4YCU9|PSA_METS5 Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=psmA PE=3 SV=1
Length = 240
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 3 CSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
CS AG+ SD +L R + ++ + Y+EPI + L + D+KQ YTQ+GG + PF
Sbjct: 78 CSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQHGG--VRPF 134
>sp|O73672|PSA2_CARAU Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2
SV=3
Length = 234
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 6 AGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+G+ D VL R +AQ+Y + Y EPIP QLV + + Q YTQ GG + PF
Sbjct: 77 SGMGPDYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQEYTQSGG--VRPF 130
>sp|P40301|PSA2_DROME Proteasome subunit alpha type-2 OS=Drosophila melanogaster
GN=Pros25 PE=1 SV=1
Length = 234
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 6 AGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+G+ D +L + R IAQ Y + Y EPIP QLV + + Q YTQ GG + PF
Sbjct: 77 SGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQEYTQSGG--VRPF 130
>sp|P24495|PSA2_XENLA Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2
SV=2
Length = 234
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 6 AGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+G+ D VL R +AQ+Y + Y EPIP QLV + + Q YTQ GG + PF
Sbjct: 77 SGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGG--VRPF 130
>sp|P25787|PSA2_HUMAN Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2
Length = 234
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 6 AGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+G+ D VL R +AQ+Y + Y EPIP QLV + + Q YTQ GG + PF
Sbjct: 77 SGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGG--VRPF 130
>sp|Q3T0Y5|PSA2_BOVIN Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3
Length = 234
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 6 AGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61
+G+ D VL R +AQ+Y + Y EPIP QLV + + Q YTQ GG + PF
Sbjct: 77 SGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGG--VRPF 130
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,177,722
Number of Sequences: 539616
Number of extensions: 682771
Number of successful extensions: 1396
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1249
Number of HSP's gapped (non-prelim): 147
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)