Query psy3468
Match_columns 68
No_of_seqs 112 out of 1069
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 17:27:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_A 20S proteasome; multica 99.8 1.5E-18 5.2E-23 112.1 8.7 64 1-66 70-133 (243)
2 1ryp_F 20S proteasome; multica 99.8 1.9E-18 6.5E-23 111.1 8.1 64 1-66 69-132 (233)
3 1iru_D 20S proteasome; cell cy 99.7 5.5E-18 1.9E-22 109.9 8.1 64 1-66 69-132 (248)
4 3nzj_F Proteasome component C1 99.7 5.9E-18 2E-22 112.6 7.6 64 1-66 74-137 (288)
5 1iru_F 20S proteasome; cell cy 99.7 8.5E-18 2.9E-22 110.1 8.1 64 1-66 70-133 (263)
6 1ryp_G 20S proteasome; multica 99.7 8.3E-18 2.8E-22 109.0 7.6 64 1-66 70-133 (244)
7 1iru_G 20S proteasome; cell cy 99.7 8.6E-18 2.9E-22 109.4 7.7 64 1-66 73-136 (254)
8 1ryp_C 20S proteasome; multica 99.7 1.3E-17 4.3E-22 107.7 8.2 64 1-66 72-135 (244)
9 1ryp_D 20S proteasome; multica 99.7 9.6E-18 3.3E-22 108.2 7.6 64 1-66 69-132 (241)
10 1iru_A 20S proteasome; cell cy 99.7 2E-17 6.7E-22 107.0 8.6 64 1-66 76-139 (246)
11 1iru_B 20S proteasome; cell cy 99.7 1.4E-17 4.8E-22 106.9 7.6 64 1-66 71-134 (233)
12 1yar_A Proteasome alpha subuni 99.7 1.8E-17 6E-22 106.4 7.8 64 1-66 74-137 (233)
13 3h4p_A Proteasome subunit alph 99.7 7.1E-18 2.4E-22 110.8 6.1 64 1-66 78-141 (264)
14 1j2p_A Alpha-ring, proteasome 99.7 1.6E-17 5.4E-22 107.6 7.6 64 1-66 74-137 (246)
15 1iru_C 20S proteasome; cell cy 99.7 2.3E-17 8E-22 107.7 7.9 64 1-66 72-135 (261)
16 1ryp_E 20S proteasome; multica 99.7 1.6E-17 5.5E-22 107.1 4.5 64 1-66 66-135 (242)
17 1iru_E 20S proteasome; cell cy 99.7 4.6E-17 1.6E-21 105.0 5.2 64 1-66 74-142 (241)
18 1q5q_H Proteasome beta-type su 99.6 3.2E-16 1.1E-20 101.0 7.0 63 1-66 41-103 (235)
19 1ryp_B 20S proteasome; multica 99.6 7.5E-16 2.6E-20 99.9 7.2 64 1-66 71-135 (250)
20 1ryp_K 20S proteasome; multica 99.6 1.2E-15 4.2E-20 95.5 7.8 62 1-66 42-103 (198)
21 3mi0_A Proteasome subunit alph 99.6 1.2E-15 4.1E-20 99.6 7.4 62 1-66 60-123 (248)
22 1q5r_H Proteasome beta-type su 99.6 3.4E-15 1.2E-19 99.5 7.3 63 1-66 106-168 (294)
23 1j2q_H Proteasome beta subunit 99.6 4.8E-15 1.6E-19 93.2 7.5 60 1-66 41-100 (202)
24 1iru_H 20S proteasome; cell cy 99.6 4.7E-15 1.6E-19 93.4 7.3 59 1-66 41-99 (205)
25 1yar_H Proteasome beta subunit 99.6 5.7E-15 2E-19 94.1 7.5 60 1-66 49-108 (217)
26 1iru_M 20S proteasome; cell cy 99.6 6E-15 2E-19 93.3 7.5 60 1-66 50-109 (213)
27 3h4p_a Proteasome subunit beta 99.6 8E-15 2.7E-19 93.6 7.4 60 1-66 42-101 (219)
28 1iru_N 20S proteasome; cell cy 99.6 6E-15 2.1E-19 93.8 6.6 62 1-66 49-111 (219)
29 1ryp_L 20S proteasome; multica 99.6 1.1E-14 3.7E-19 92.2 7.2 60 1-66 41-100 (212)
30 1q5q_A Proteasome alpha-type s 99.6 9.7E-15 3.3E-19 95.5 7.0 62 1-66 60-123 (259)
31 1ryp_M 20S proteasome; multica 99.5 1.4E-14 4.8E-19 92.5 7.2 60 1-66 50-110 (222)
32 1ryp_N 20S proteasome; multica 99.5 1.1E-14 3.9E-19 93.4 6.5 62 1-66 49-115 (233)
33 3unf_N Proteasome subunit beta 99.5 2.5E-14 8.5E-19 89.6 7.7 59 1-66 41-99 (199)
34 1ryp_J 20S proteasome; multica 99.5 2.7E-14 9.4E-19 89.8 7.4 60 1-66 48-107 (204)
35 1iru_L 20S proteasome; cell cy 99.5 3.2E-14 1.1E-18 89.5 7.1 60 1-66 41-100 (204)
36 1g0u_M Proteasome component PR 99.5 3E-14 1E-18 93.4 6.5 62 1-66 82-148 (266)
37 2jay_A Proteasome; hydrolase; 99.5 1.8E-14 6.2E-19 95.8 5.4 63 1-66 98-160 (291)
38 1iru_J 20S proteasome; cell cy 99.5 7.2E-14 2.4E-18 87.9 7.2 60 1-66 49-108 (205)
39 1ryp_I 20S proteasome; multica 99.5 1.3E-13 4.3E-18 88.2 7.5 59 1-66 41-99 (222)
40 3unf_H Proteasome subunit beta 99.5 2.3E-13 7.8E-18 88.0 7.6 59 1-66 41-99 (234)
41 3nzj_K Proteasome component PR 99.4 2E-13 6.9E-18 90.7 7.2 60 1-66 116-175 (287)
42 1ryp_H 20S proteasome; multica 99.4 5.2E-13 1.8E-17 84.1 7.1 52 1-53 50-101 (205)
43 1iru_I 20S proteasome; cell cy 99.4 7.6E-13 2.6E-17 85.2 7.5 59 1-66 41-99 (234)
44 1iru_K 20S proteasome; cell cy 99.4 8.9E-13 3E-17 82.7 6.8 62 1-66 42-103 (201)
45 3nzj_H Proteasome component PU 99.3 3.1E-12 1.1E-16 83.9 7.5 59 1-66 70-128 (261)
46 1m4y_A ATP-dependent protease 99.1 8.1E-11 2.8E-15 72.3 4.7 55 1-66 42-96 (171)
47 2z3b_A ATP-dependent protease 99.1 8.2E-11 2.8E-15 73.1 4.7 55 1-66 48-102 (180)
48 1g3k_A ATP-dependent protease 99.0 4.7E-10 1.6E-14 69.1 4.4 54 1-65 42-95 (174)
49 3mav_A Farnesyl pyrophosphate 84.4 0.86 2.9E-05 31.0 3.2 52 11-62 35-86 (395)
50 2gx5_A GTP-sensing transcripti 61.3 17 0.00059 22.1 4.6 36 14-49 12-47 (170)
51 2juy_A Neopetrosiamide A; amph 58.8 3.2 0.00011 17.8 0.7 9 58-66 2-10 (28)
52 3bl2_A V-BCL-2; protein-protei 58.0 22 0.00076 20.5 4.4 31 3-33 25-55 (131)
53 1b66_A 6-pyruvoyl tetrahydropt 53.4 9.9 0.00034 22.2 2.4 44 6-49 62-115 (140)
54 1u84_A Hypothetical protein; s 48.7 32 0.0011 18.9 4.7 34 11-48 46-79 (90)
55 3v5w_G G gamma-I, guanine nucl 48.4 31 0.001 18.5 4.7 40 9-54 15-54 (77)
56 2jt1_A PEFI protein; solution 47.0 17 0.00058 19.1 2.5 15 31-45 22-36 (77)
57 1y13_A PTPS, 6-pyruvoyl tetrah 43.3 20 0.0007 21.5 2.8 45 6-50 66-149 (181)
58 3or1_C Sulfite reductase GAMA; 39.5 47 0.0016 18.6 3.8 33 8-44 42-74 (105)
59 2xgv_A PSIV capsid N-terminal 37.0 35 0.0012 20.4 3.0 33 4-36 58-90 (142)
60 3lx3_A 6-pyruvoyl tetrahydrobi 36.2 31 0.001 20.9 2.8 45 6-50 65-148 (180)
61 2oba_A Probable 6-pyruvoyl tet 34.8 43 0.0015 19.4 3.2 44 6-49 66-115 (138)
62 3nbm_A PTS system, lactose-spe 32.7 45 0.0015 18.5 2.9 24 2-27 11-34 (108)
63 1yx3_A Hypothetical protein DS 32.3 79 0.0027 18.6 5.1 36 8-47 62-97 (132)
64 1sau_A Sulfite reductase, desu 31.5 76 0.0026 18.1 4.5 36 8-47 46-81 (115)
65 3gr0_A Protein PRGH; type III 31.3 31 0.0011 21.6 2.3 32 33-65 165-196 (197)
66 1kdl_A YOPD protein; yersinia, 29.7 40 0.0014 14.3 2.0 15 40-54 4-18 (26)
67 1vzm_A Osteocalcin; calcium-bi 28.0 58 0.002 15.7 2.9 27 32-61 19-45 (45)
68 2bf9_A Pancreatic hormone; tur 27.3 54 0.0018 15.1 2.9 18 31-48 9-26 (36)
69 3d7j_A Uncharacterized protein 27.2 42 0.0014 19.8 2.2 47 6-52 66-120 (152)
70 2xde_A GAG polyprotein, HIV-1 26.7 1.1E+02 0.0037 18.3 4.1 36 4-39 59-95 (145)
71 2g64_A Putative 6-pyruvoyl tet 26.1 27 0.00091 20.2 1.2 44 6-49 62-114 (140)
72 1bba_A Bovine pancreatic polyp 26.1 53 0.0018 15.1 2.0 18 31-48 9-26 (36)
73 3neu_A LIN1836 protein; struct 25.4 41 0.0014 18.7 1.9 34 11-44 14-48 (125)
74 2heo_A Z-DNA binding protein 1 23.9 75 0.0026 15.6 3.1 25 20-44 12-36 (67)
75 2xgu_A Relik capsid N-terminal 23.8 87 0.003 18.8 3.2 29 4-32 58-86 (149)
76 3oio_A Transcriptional regulat 23.7 90 0.0031 16.5 3.1 15 29-43 19-33 (113)
77 2w9y_A CE-FAR-7, fatty acid/re 23.4 1.2E+02 0.0042 17.9 3.8 37 5-41 77-115 (140)
78 2ot8_C HnRNP M, heterogeneous 23.0 28 0.00095 15.3 0.7 10 53-62 16-25 (30)
79 3gr1_A Protein PRGH; type III 22.4 57 0.002 20.8 2.3 35 31-66 163-197 (227)
80 1rrz_A Glycogen synthesis prot 22.1 67 0.0023 17.6 2.2 25 24-48 38-62 (86)
81 3tqn_A Transcriptional regulat 21.9 50 0.0017 17.9 1.8 33 12-44 11-44 (113)
82 2w83_C C-JUN-amino-terminal ki 20.4 1.1E+02 0.0039 16.3 3.0 19 34-52 2-20 (77)
No 1
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=99.77 E-value=1.5e-18 Score=112.10 Aligned_cols=64 Identities=25% Similarity=0.319 Sum_probs=62.1
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.+|++|+++|+++||++.+|+.|++++|.|||+++.| ||||+.+
T Consensus 70 i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~r--P~~v~~l 133 (243)
T 1ryp_A 70 IGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMR--PLGVILT 133 (243)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSC--CCSCEEE
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcc--ccceEEE
Confidence 689999999999999999999999999999999999999999999999999999999 9999875
No 2
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=99.76 E-value=1.9e-18 Score=111.06 Aligned_cols=64 Identities=31% Similarity=0.384 Sum_probs=62.0
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|+++++++||++.+++.+++++|.|||+++.| ||||+.+
T Consensus 69 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~r--p~~v~~l 132 (233)
T 1ryp_F 69 MGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGR--PYGVGLL 132 (233)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCC--CCCEEEE
T ss_pred EEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCc--CcceEEE
Confidence 589999999999999999999999999999999999999999999999999999999 9999875
No 3
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=99.74 E-value=5.5e-18 Score=109.94 Aligned_cols=64 Identities=27% Similarity=0.474 Sum_probs=62.2
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.++++|+++++++||++.+++.+++++|.|||+++.| ||||+.+
T Consensus 69 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~r--p~~v~~l 132 (248)
T 1iru_D 69 VCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRR--PFGISAL 132 (248)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBC--CCCEEEE
T ss_pred EEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcc--cccEEEE
Confidence 689999999999999999999999999999999999999999999999999999999 9999875
No 4
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=99.74 E-value=5.9e-18 Score=112.60 Aligned_cols=64 Identities=25% Similarity=0.384 Sum_probs=61.9
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|+++|+.+|++.|++++|.+|+.|+++|+++||++.+|+.|++++|.|||+++.| ||||+.+
T Consensus 74 i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~r--P~gv~~l 137 (288)
T 3nzj_F 74 IGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVR--PFGVSTI 137 (288)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBC--CCCEEEE
T ss_pred EEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCC--CceEEEE
Confidence 589999999999999999999999999999999999999999999999999999999 9999875
No 5
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=99.74 E-value=8.5e-18 Score=110.09 Aligned_cols=64 Identities=27% Similarity=0.365 Sum_probs=62.0
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.+|++|+++|+++||++.+++.+++++|.|||+++.| ||||+.+
T Consensus 70 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~R--P~~v~~l 133 (263)
T 1iru_F 70 IGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRR--PYGVGLL 133 (263)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCC--CCCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccc--cceEEEE
Confidence 589999999999999999999999999999999999999999999999999999999 9999875
No 6
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=99.73 E-value=8.3e-18 Score=108.98 Aligned_cols=64 Identities=25% Similarity=0.384 Sum_probs=61.7
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.++++|+++++++||++.+++.|++++|.|||+++.| ||||+.+
T Consensus 70 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~r--p~~v~~l 133 (244)
T 1ryp_G 70 IGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVR--PFGVSTI 133 (244)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBC--CCCEEEE
T ss_pred EEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcc--CceEEEE
Confidence 589999999999999999999999999999999999999999999999999998889 9999875
No 7
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=99.73 E-value=8.6e-18 Score=109.44 Aligned_cols=64 Identities=25% Similarity=0.348 Sum_probs=62.0
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.+++.|+++|+++||++.+++.+++++|.|||+++.| ||||+.+
T Consensus 73 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~r--P~~v~~l 136 (254)
T 1iru_G 73 VGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVR--PFGCSFM 136 (254)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBC--CCSEEEE
T ss_pred EEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccc--cceEEEE
Confidence 589999999999999999999999999999999999999999999999999999999 9999875
No 8
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=99.73 E-value=1.3e-17 Score=107.71 Aligned_cols=64 Identities=52% Similarity=0.739 Sum_probs=61.9
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|+++++++||++.+++.+++++|.|||+++.| ||||+.+
T Consensus 72 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~r--p~~v~~l 135 (244)
T 1ryp_C 72 IAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLR--PFGVSFI 135 (244)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCC--CCCEEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcc--ceEEEEE
Confidence 589999999999999999999999999999999999999999999999999999999 9999875
No 9
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=99.73 E-value=9.6e-18 Score=108.22 Aligned_cols=64 Identities=30% Similarity=0.511 Sum_probs=61.9
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.++++|+++++++||++.+|+.|++++|.|||+++.| ||||+.+
T Consensus 69 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~r--P~~v~~l 132 (241)
T 1ryp_D 69 VVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVR--PFGVSTL 132 (241)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBC--CCSEEEE
T ss_pred EEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCC--CcceeeE
Confidence 589999999999999999999999999999999999999999999999999999999 9999875
No 10
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=99.72 E-value=2e-17 Score=107.02 Aligned_cols=64 Identities=27% Similarity=0.400 Sum_probs=61.9
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|+++++++||++.+++.+++++|.|||+++.| ||||+.+
T Consensus 76 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~r--p~~v~~l 139 (246)
T 1iru_A 76 IGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMR--PLGCCMI 139 (246)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBC--CCSEEEE
T ss_pred EEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCC--CcceEEE
Confidence 689999999999999999999999999999999999999999999999999999999 9999875
No 11
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=99.72 E-value=1.4e-17 Score=106.91 Aligned_cols=64 Identities=38% Similarity=0.593 Sum_probs=61.8
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|++++++++|++.+++.+++++|.|||+++.| ||||+.+
T Consensus 71 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~r--P~~v~~l 134 (233)
T 1iru_B 71 IGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVR--PFGVSLL 134 (233)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBC--CCSEEEE
T ss_pred EEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCC--CcEEEEE
Confidence 589999999999999999999999999999999999999999999999999999999 9999875
No 12
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.72 E-value=1.8e-17 Score=106.44 Aligned_cols=64 Identities=33% Similarity=0.480 Sum_probs=61.9
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|++++++++|++.+|+.+++++|+|||+++.| ||||+.+
T Consensus 74 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~r--p~~v~~l 137 (233)
T 1yar_A 74 VAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVR--PYGVSLI 137 (233)
T ss_dssp EEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBC--CCCEEEE
T ss_pred EEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcC--cceEEEE
Confidence 589999999999999999999999999999999999999999999999999999999 9999875
No 13
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=7.1e-18 Score=110.76 Aligned_cols=64 Identities=41% Similarity=0.623 Sum_probs=61.8
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.+++.|++.|+++||++.+|+.|++++|.|||+++.| ||||+.+
T Consensus 78 i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~r--P~~v~~l 141 (264)
T 3h4p_A 78 VAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVR--PFGVSLL 141 (264)
T ss_dssp EEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCC--CCSEEEE
T ss_pred EEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCC--CeeEEEE
Confidence 589999999999999999999999999999999999999999999999999999999 9999864
No 14
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=99.72 E-value=1.6e-17 Score=107.56 Aligned_cols=64 Identities=38% Similarity=0.635 Sum_probs=61.9
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|++++++++|++.+++.|++++|.|||+++.| |||++.+
T Consensus 74 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~r--p~~v~~l 137 (246)
T 1j2p_A 74 ICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVR--PFGVSLL 137 (246)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBC--CCCEEEE
T ss_pred EEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcc--cccEEEE
Confidence 589999999999999999999999999999999999999999999999999999999 9999875
No 15
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=99.71 E-value=2.3e-17 Score=107.72 Aligned_cols=64 Identities=75% Similarity=1.212 Sum_probs=62.0
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.+|++|+++++++||++.+++.+++++|.|||+++.| ||||+.+
T Consensus 72 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~r--P~~v~~l 135 (261)
T 1iru_C 72 MACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKR--PFGVSLL 135 (261)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCC--CCCEEEE
T ss_pred EEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcC--cceEEEE
Confidence 589999999999999999999999999999999999999999999999999999999 9999875
No 16
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=99.69 E-value=1.6e-17 Score=107.10 Aligned_cols=64 Identities=25% Similarity=0.462 Sum_probs=61.7
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCC------CCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG------QSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~------~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.++++|+++|++++|++.+++.+++++|.|||+++ .| ||||+.+
T Consensus 66 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~R--P~~v~~l 135 (242)
T 1ryp_E 66 IGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSR--PFGVALL 135 (242)
T ss_dssp EEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSS--CCSEEEE
T ss_pred EEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccC--cceEEEE
Confidence 5899999999999999999999999999999999999999999999999999999 89 9999875
No 17
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=99.67 E-value=4.6e-17 Score=105.01 Aligned_cols=64 Identities=20% Similarity=0.414 Sum_probs=61.6
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCC-----CCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG-----QSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~-----~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|++++++++|++.+++.+++++|.|||+++ .| ||||+.+
T Consensus 74 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~r--p~~v~~l 142 (241)
T 1iru_E 74 IGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSR--PFGVALL 142 (241)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSS--CCCEEEE
T ss_pred EEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccc--cceEEEE
Confidence 5899999999999999999999999999999999999999999999999999998 89 9999865
No 18
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.65 E-value=3.2e-16 Score=100.95 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=60.0
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.++++|+++|+++||++.+++.|++++|.+||++ .| ||||+.+
T Consensus 41 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~-~r--p~~v~~l 103 (235)
T 1q5q_H 41 SAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAA-MQ--GLAVVPL 103 (235)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHH-TT--TCCEEEE
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhh-hc--ccceEEE
Confidence 589999999999999999999999999999999999999999999999999986 89 9999864
No 19
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=99.63 E-value=7.5e-16 Score=99.87 Aligned_cols=64 Identities=31% Similarity=0.399 Sum_probs=61.4
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQR-YLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~-y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.+++. |++.|+++++++.+++.+++++|.+||+++.| ||||+.+
T Consensus 71 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~r--p~~v~~l 135 (250)
T 1ryp_B 71 IGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVR--PFGVSLL 135 (250)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBC--CCCEEEE
T ss_pred EEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc--cceEEEE
Confidence 5899999999999999999999999 99999999999999999999999999999889 9999875
No 20
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=99.63 E-value=1.2e-15 Score=95.53 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=57.8
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|+++|++++|++.+++.+++.+|.+|+. ++ |||++.+
T Consensus 42 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~--r~--p~~v~~l 103 (198)
T 1ryp_K 42 TLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRS--RR--PYQVNVL 103 (198)
T ss_dssp EEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTS--SS--CCCEEEE
T ss_pred EEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc--CC--CceEEEE
Confidence 58999999999999999999999999999999999999999999999999853 46 9999875
No 21
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.62 E-value=1.2e-15 Score=99.61 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=58.6
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHH-HHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYN-EPIPCEQLVACLC-DIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~-~~i~v~~la~~ls-~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|+++|+.+|++.|.+.++.+++.|++.|+ ++||++.|++.|+ ++.|.||| +.| ||||+.+
T Consensus 60 i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~r--P~gv~~l 123 (248)
T 3mi0_A 60 VGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE--QAK--PYEVELC 123 (248)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSS--CCCEEEE
T ss_pred EEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc--CCC--CceEEEE
Confidence 6899999999999999999999999999999 9999999999999 88999999 678 9999864
No 22
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=99.59 E-value=3.4e-15 Score=99.52 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=59.9
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|+++|+.+|++.|++++|.++++|+++|+++|+++.+++.|++++|.+|+++ .| ||||+.+
T Consensus 106 i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~-~r--p~~v~lL 168 (294)
T 1q5r_H 106 SAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAA-MQ--GLAVVPL 168 (294)
T ss_dssp EEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH-TT--TTCEEEE
T ss_pred EEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhh-cC--CcceEEE
Confidence 589999999999999999999999999999999999999999999999999986 88 9999864
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.59 E-value=4.8e-15 Score=93.16 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=55.6
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|+++|+++||++.+++.+++.+|.++ .| |||++.+
T Consensus 41 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~r----~r--p~~~~~l 100 (202)
T 1j2q_H 41 MAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYR----YF--PYLVQLL 100 (202)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTT----TS--CCCEEEE
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhC----CC--CceEEEE
Confidence 589999999999999999999999999999999999999999999998752 56 9999865
No 24
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.58 E-value=4.7e-15 Score=93.39 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=56.0
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|+++|++++|++.+++.+++.+|.||| |||++.+
T Consensus 41 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~-------p~~~~~l 99 (205)
T 1iru_H 41 IFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-------DLMAGII 99 (205)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTT-------TCCEEEE
T ss_pred EEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCc-------CccEEEE
Confidence 5899999999999999999999999999999999999999999999999986 8998764
No 25
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.58 E-value=5.7e-15 Score=94.05 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=55.6
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|++++++++|++.+++.+++.+|.++ .| ||||+.+
T Consensus 49 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r----~r--p~~v~~l 108 (217)
T 1yar_H 49 TGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVK----YM--PYMVQLL 108 (217)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTT----TS--CCCEEEE
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcC----CC--CceEEEE
Confidence 589999999999999999999999999999999999999999999998752 56 9999865
No 26
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.58 E-value=6e-15 Score=93.35 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=55.8
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|++++++++|++.+++.|++.+ |||+ .| |||++.+
T Consensus 50 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~r--~~--P~~v~~l 109 (213)
T 1iru_M 50 TVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTIL--YSRR--FF--PYYVYNI 109 (213)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH--HHTT--TS--CCCEEEE
T ss_pred EEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HhhC--CC--CceEEEE
Confidence 58999999999999999999999999999999999999999999998 6776 56 9999865
No 27
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.57 E-value=8e-15 Score=93.57 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=55.8
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|+++|+.+|++.|++++|.+++.|+++|++++|++.+++.|++++|.++ .| ||||+.+
T Consensus 42 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~----~~--P~~v~~l 101 (219)
T 3h4p_a 42 IAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSR----MF--PFLTQII 101 (219)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHTT----TT--TCCCCCE
T ss_pred EEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhc----CC--CceEEEE
Confidence 589999999999999999999999999999999999999999999999873 46 9999864
No 28
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.56 E-value=6e-15 Score=93.77 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=57.8
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLI-QYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~-~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|++ ++++++|++.+++.+++.+ |+++++.| ||+++.+
T Consensus 49 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~--P~~v~~l 111 (219)
T 1iru_N 49 TMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAM--YSRRSKMN--PLWNTMV 111 (219)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHH--HHHHHTTC--CCCEEEE
T ss_pred EEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHhcccCC--CceEEEE
Confidence 5899999999999999999999999998 9999999999999999998 56788888 9999875
No 29
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.56 E-value=1.1e-14 Score=92.22 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=56.5
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.+++.|++++++++|++.+++.+++.+|.|||+ |||++.+
T Consensus 41 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~------p~~v~~l 100 (212)
T 1ryp_L 41 LLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGA------GLSMGTM 100 (212)
T ss_dssp EEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTS------CCCBEEE
T ss_pred EEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCC------CceEEEE
Confidence 58999999999999999999999999999999999999999999999999984 8888764
No 30
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.55 E-value=9.7e-15 Score=95.45 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=57.4
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHH-HHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNE-PIPCEQLVACLCD-IKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~-~i~v~~la~~ls~-~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.+|+.|++.|++ +||++.+++.|++ +.|.|| ++.| ||||+.+
T Consensus 60 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt--~~~r--P~~v~~l 123 (259)
T 1q5q_A 60 LGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT--EQPK--PYEVEIC 123 (259)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH--HSSS--CCCEEEE
T ss_pred EEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhc--cCCC--CceEEEE
Confidence 58999999999999999999999999999984 9999999999999 889999 3577 9999875
No 31
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.55 E-value=1.4e-14 Score=92.51 Aligned_cols=60 Identities=15% Similarity=0.344 Sum_probs=54.6
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYN-EPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~-~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|+++++ ++|+++.+|+.+++.+ |+ .|++||+++.+
T Consensus 50 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~----~r~~P~~v~~i 110 (222)
T 1ryp_M 50 IVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLL--YG----KRFFPYYVHTI 110 (222)
T ss_dssp EEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHH--HT----TTTSCCCEEEE
T ss_pred EEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--Hh----cCCCCceEEEE
Confidence 5899999999999999999999999999999 9999999999999998 33 44669999875
No 32
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.54 E-value=1.1e-14 Score=93.41 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=58.2
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHH-----HhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLI-----QYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~-----~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.+++.|++ .++++|+++.+++.+++.+ |+++++.| ||||+.+
T Consensus 49 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~--P~~v~~l 115 (233)
T 1ryp_N 49 TVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRSKMN--PLWNAII 115 (233)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTC--CCCEEEE
T ss_pred EEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHH--HHhcCCCC--CceEEEE
Confidence 5899999999999999999999999999 9999999999999999998 67888888 9999875
No 33
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.54 E-value=2.5e-14 Score=89.61 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=55.1
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.+++.|++.|++++|++.+++.+++.+|.+ +| |||++.+
T Consensus 41 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~--p~~v~~l 99 (199)
T 3unf_N 41 IFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKY-----RE--DLLAHLI 99 (199)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHT-----TT--TCCCCEE
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-----CC--CceEEEE
Confidence 58999999999999999999999999999999999999999999999864 57 9999864
No 34
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.53 E-value=2.7e-14 Score=89.79 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=55.3
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+++++|+.+|++.|++++|.+++.|++++++++|++.+++.+++.+ |||+ +.|||++.+
T Consensus 48 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~~----~~P~~v~~l 107 (204)
T 1ryp_J 48 VFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSL--YERR----FGPYFVGPV 107 (204)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH--HTTT----TSCCCEEEE
T ss_pred EEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH--HHhc----CCCceEEEE
Confidence 58999999999999999999999999999999999999999999999 7775 339999865
No 35
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.52 E-value=3.2e-14 Score=89.46 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=55.1
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|+++|++++|++.+++.+++.+|.+|+ +||+++.+
T Consensus 41 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~------~~~~v~~l 100 (204)
T 1iru_L 41 LLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKG------MGLSMGTM 100 (204)
T ss_dssp EEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTT------SCCCBEEE
T ss_pred EEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCC------CCeeEEEE
Confidence 5899999999999999999999999999999999999999999999998864 38887654
No 36
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.51 E-value=3e-14 Score=93.35 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=58.2
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHH-----HhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLI-----QYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~-----~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.+++.|++ .++++++++.+++.|++++ |+++++.| ||||+.+
T Consensus 82 i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~--P~~v~~l 148 (266)
T 1g0u_M 82 TVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRSKMN--PLWNAII 148 (266)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTC--CCCEEEE
T ss_pred EEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHH--HHhccCCC--CceEEEE
Confidence 5899999999999999999999999998 9999999999999999997 77888888 9999875
No 37
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.51 E-value=1.8e-14 Score=95.84 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=59.3
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.+++.|++.++++++++.+++.|++++|.+++ ++.| ||||+.+
T Consensus 98 i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~r--pf~v~~l 160 (291)
T 2jay_A 98 TATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQ--GLLALPL 160 (291)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHH--TCCCEEE
T ss_pred EEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhcc--ccceeEE
Confidence 5899999999999999999999999999999999999999999999999988 5689 9999764
No 38
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.49 E-value=7.2e-14 Score=87.93 Aligned_cols=60 Identities=15% Similarity=0.308 Sum_probs=55.3
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.+++.|++++++++|++.+++.+++.+ |||+ +.|||++.+
T Consensus 49 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~r----~~P~~v~~l 108 (205)
T 1iru_J 49 LYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLL--YEKR----FGPYYTEPV 108 (205)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHH--HTTT----TSCCSCCCE
T ss_pred EEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--HHhc----CCCceEEEE
Confidence 58999999999999999999999999999999999999999999999 7775 349999865
No 39
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=99.48 E-value=1.3e-13 Score=88.17 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=55.0
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.+++.|+++++++|+++.+++.+++.+|.| .| |||++.+
T Consensus 41 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~--p~~v~~l 99 (222)
T 1ryp_I 41 IWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY-----QG--HIGAYLI 99 (222)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----TT--CSCEEEE
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc-----CC--CCCeeEE
Confidence 58999999999999999999999999999999999999999999998865 58 9998864
No 40
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=99.46 E-value=2.3e-13 Score=87.97 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=54.8
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.++++|+++++++++++.+++.+++.+|.| .| |||++.+
T Consensus 41 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~--p~~v~ll 99 (234)
T 3unf_H 41 IYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRY-----QG--HVGASLV 99 (234)
T ss_dssp EEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHT-----TT--CSCEEEE
T ss_pred EEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhc-----CC--CccEEEE
Confidence 58999999999999999999999999999999999999999999999865 47 9999864
No 41
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=99.45 E-value=2e-13 Score=90.69 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=55.9
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+++++|+.+|++.|++++|.+|+.|+++++++|+++.+++.+++++|.+|| + ||+++.+
T Consensus 116 i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~----~--p~~v~~l 175 (287)
T 3nzj_K 116 LLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----A--GLSMGTM 175 (287)
T ss_dssp EEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----S--CCCEEEE
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC----C--CceEEEE
Confidence 5899999999999999999999999999999999999999999999999887 3 8988754
No 42
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.42 E-value=5.2e-13 Score=84.08 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=50.1
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQY 53 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~ 53 (68)
|++++||+.+|++.|++++|.++++|++++++ +|++.+++.+++.+|.|||.
T Consensus 50 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~~~~ 101 (205)
T 1ryp_H 50 IWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYENKDN 101 (205)
T ss_dssp EEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHTTTT
T ss_pred EEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhcC
Confidence 58999999999999999999999999999999 99999999999999999874
No 43
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.41 E-value=7.6e-13 Score=85.25 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=54.4
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.+++.|+++++++++++.+++.+++.+|.| .+ |||++.+
T Consensus 41 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~--~~~v~ll 99 (234)
T 1iru_I 41 IYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRY-----RG--YIGAALV 99 (234)
T ss_dssp EEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHT-----TT--CSCEEEE
T ss_pred EEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-----CC--CCceeEE
Confidence 58999999999999999999999999999999999999999999999866 36 8998764
No 44
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.39 E-value=8.9e-13 Score=82.69 Aligned_cols=62 Identities=10% Similarity=0.068 Sum_probs=52.4
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.+++.|++++++++|++.+++.+++.+. + +....| |||++.+
T Consensus 42 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~-~-~~~~~~--p~~~~~l 103 (201)
T 1iru_K 42 ILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLA-D-CLRSRT--PYHVNLL 103 (201)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH-H-HHTSSS--CCCEEEE
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-H-HHhcCC--CccEEEE
Confidence 589999999999999999999999999999999999999988876541 2 223346 9999865
No 45
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.34 E-value=3.1e-12 Score=83.91 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=53.9
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+|++||+.+|++.|++++|.+++.|+++++++++++.+++.+++.++.| .| |||++.+
T Consensus 70 i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~--~~gv~ll 128 (261)
T 3nzj_H 70 IWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY-----QG--HIGAYLI 128 (261)
T ss_dssp EEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----TT--CSCEEEE
T ss_pred EEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHh-----cC--cccEEEE
Confidence 58999999999999999999999999999999999999999999987643 57 9999864
No 46
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.11 E-value=8.1e-11 Score=72.28 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=47.3
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|++++||+.+|++.|++++|.++++|+++ +.+.++++.|.++|+.+.| |||++.+
T Consensus 42 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~--~~~~~~l 96 (171)
T 1m4y_A 42 VLAGFAGSVADAMTLFDRFEAKLREWGGN---------LTKAAVELAKDWRTDRVLR--RLEALLL 96 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTTC---------HHHHHHHHHHHHHHCTTGG--GCCCEEE
T ss_pred EEEEeCccHHHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHHHHhCCCC--ceEEEEE
Confidence 57999999999999999999999998854 3566777788899988888 9999764
No 47
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.10 E-value=8.2e-11 Score=73.09 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=48.0
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
|+++++|+.+|++.|++++|.++++|+ + .+++.++++.|.+||+.+.| ||+++.+
T Consensus 48 i~~~~aG~~aD~~~l~~~~~~~~~~y~---g------~~~~~~~~l~~~~~~~~~~r--p~~~~~l 102 (180)
T 2z3b_A 48 VLAGFAGSVADAFTLFEKFEAKLEEYN---G------NLKRAAVELAKEWRSDKVLR--KLEAMLI 102 (180)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHTT---T------CHHHHHHHHHHHHHHCTTGG--GCCCCEE
T ss_pred EEEEeCchHHHHHHHHHHHHHHHHHhc---C------ChHHHHHHHHHHHHhhhCcC--cceEEEE
Confidence 579999999999999999999999998 3 34566677889999999999 9999865
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=98.98 E-value=4.7e-10 Score=69.11 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=46.5
Q ss_pred CEEeecchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceecc
Q psy3468 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNK 65 (68)
Q Consensus 1 ig~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~ 65 (68)
|++++||+.+|++.|++++|.++++|++ + +++.++++.|.+||+.+.| |+++..
T Consensus 42 i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~---~~~~~~~l~~~~~~~~~~r--~~~~~l 95 (174)
T 1g3k_A 42 VLAGFAGGTADAFTLFELFERKLEMHQG------H---LLKSAVELAKDWRTDRALR--KLEAML 95 (174)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTT------C---HHHHHHHHHHHHHHSTTGG--GCCCEE
T ss_pred EEEEeCccHHHHHHHHHHHHHHHHHhcC------c---HHHHHHHHHHHHHhccCcC--cceEEE
Confidence 5799999999999999999999999986 2 4667778889999998899 987643
No 49
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=84.43 E-value=0.86 Score=31.01 Aligned_cols=52 Identities=12% Similarity=0.062 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCce
Q psy3468 11 DANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFR 62 (68)
Q Consensus 11 D~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g 62 (68)
....+.+..+.+..++.-.+..+-++..+...+-..+-.|+..||+|.||.=
T Consensus 35 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~GGKRlRP~l 86 (395)
T 3mav_A 35 FFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGIL 86 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCCchhhhHHH
Confidence 3455667777777777777776666677777777777789999999988963
No 50
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=61.28 E-value=17 Score=22.15 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy3468 14 VLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQG 49 (68)
Q Consensus 14 ~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~ 49 (68)
.|.++.|..-+-=+...+.+++.+.+|+.||+.+..
T Consensus 12 ~LL~KtRkIN~lLq~~~~~~v~f~eia~vLs~vL~~ 47 (170)
T 2gx5_A 12 ALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDS 47 (170)
T ss_dssp HHHHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCC
Confidence 578888988777777778999999999999999965
No 51
>2juy_A Neopetrosiamide A; amphipathic, antitumor protein; HET: SME; NMR {Neopetrosia SP}
Probab=58.79 E-value=3.2 Score=17.85 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=7.0
Q ss_pred CCCceeccc
Q psy3468 58 IIPFRRNKT 66 (68)
Q Consensus 58 ~~P~g~~~~ 66 (68)
|-||||++.
T Consensus 2 fcpfgcalv 10 (28)
T 2juy_A 2 FCPFGCALV 10 (28)
T ss_dssp CCSSSSTTT
T ss_pred cccccceEe
Confidence 459999875
No 52
>3bl2_A V-BCL-2; protein-protein complex, viral BCL-2, apoptosis, autophagy, antiviral defense, coiled coil, cytoplasm, golgi apparatus, membrane; 2.30A {Murid herpesvirus 4} SCOP: f.1.4.1 PDB: 3dvu_A 2abo_A
Probab=58.05 E-value=22 Score=20.53 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=27.6
Q ss_pred EeecchHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy3468 3 CSVAGITSDANVLTSELRAIAQRYLIQYNEP 33 (68)
Q Consensus 3 ~~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~ 33 (68)
|.-||+.+|...|++.....-..|...|+..
T Consensus 25 Cvds~vL~DVs~i~tLTqeF~~hYdSVy~~~ 55 (131)
T 3bl2_A 25 CVDSAVLVDVSKIITLTQEFRRHYDSVYRAD 55 (131)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ccchhhHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 4568999999999999999999999999876
No 53
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A
Probab=53.42 E-value=9.9 Score=22.19 Aligned_cols=44 Identities=9% Similarity=0.002 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHHHHH---HHHHHHHHh-------CCCCCHHHHHHHHHHHHHH
Q psy3468 6 AGITSDANVLTSELRA---IAQRYLIQY-------NEPIPCEQLVACLCDIKQG 49 (68)
Q Consensus 6 sGl~aD~r~lv~~~r~---~a~~y~~~~-------~~~i~v~~la~~ls~~~q~ 49 (68)
.|++-|...|-+..+. +..+|++-. +.+++.+.||..|-+.+..
T Consensus 62 ~GmV~Df~~lK~~i~~~i~~~lDH~~Ln~dvp~f~~~~pTaEnlA~~i~~~l~~ 115 (140)
T 1b66_A 62 TGMVMNLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQR 115 (140)
T ss_dssp TCCSSCHHHHHHHHHHHTHHHHTTEEHHHHCGGGTSSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHhhcCCCCcccccCcccCCCCCCHHHHHHHHHHHHHH
Confidence 5788888888877776 233444443 3478999999999998864
No 54
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=48.71 E-value=32 Score=18.90 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy3468 11 DANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQ 48 (68)
Q Consensus 11 D~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q 48 (68)
|...|.+..+ .-|.+.|++.+|++.+ ..++..+-
T Consensus 46 ~~~~LA~~Iq---~If~~SFee~~p~e~c-~~iA~kLL 79 (90)
T 1u84_A 46 DARTLAARIQ---SIYEFAFDEPIPFPHC-LKLARRLL 79 (90)
T ss_dssp CHHHHHHHHH---HHHHHHHSSCCCHHHH-HHHHHHHH
T ss_pred CHHHHHHHHH---HHHHHHHhcccChHHH-HHHHHHHH
Confidence 3344444443 6789999999999984 56776653
No 55
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=48.38 E-value=31 Score=18.53 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcC
Q psy3468 9 TSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYG 54 (68)
Q Consensus 9 ~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~q~~Tq~~ 54 (68)
.+.+|-+|+.+|.||.. +.++|+..+..|=.+..+..+..
T Consensus 15 i~q~rk~VeQLr~Ea~i------~RikVSqaaadL~~yc~~~~~~D 54 (77)
T 3v5w_G 15 IAQARKLVEQLKMEANI------DRIKVSKAAADLMAYCEAHAKED 54 (77)
T ss_dssp HHHHHHHHHHHHHHHSS------CCCCHHHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHHHHHHHHHhcc------chhhHHHHHHHHHHHHHhcCCCC
Confidence 46677888888877754 56889988888877777766654
No 56
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=47.00 E-value=17 Score=19.14 Aligned_cols=15 Identities=7% Similarity=0.162 Sum_probs=12.3
Q ss_pred CCCCCHHHHHHHHHH
Q psy3468 31 NEPIPCEQLVACLCD 45 (68)
Q Consensus 31 ~~~i~v~~la~~ls~ 45 (68)
|.|+++..||+.++-
T Consensus 22 g~~psv~EIa~~lgv 36 (77)
T 2jt1_A 22 GAPVKTRDIADAAGL 36 (77)
T ss_dssp TSCEEHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHCC
Confidence 889999998887653
No 57
>1y13_A PTPS, 6-pyruvoyl tetrahydropterin synthase; structural genomics of pathogenic protozoa consortium, SGPP, structural genomics, PSI; HET: BIO; 2.20A {Plasmodium falciparum} SCOP: d.96.1.2
Probab=43.32 E-value=20 Score=21.52 Aligned_cols=45 Identities=9% Similarity=0.154 Sum_probs=32.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhC---------------------------------------CCCCHHHHHHHHHHH
Q psy3468 6 AGITSDANVLTSELRAIAQRYLIQYN---------------------------------------EPIPCEQLVACLCDI 46 (68)
Q Consensus 6 sGl~aD~r~lv~~~r~~a~~y~~~~~---------------------------------------~~i~v~~la~~ls~~ 46 (68)
.|++-|...|-+..+.....+-+.+- .+++.+.||+.|.+.
T Consensus 66 ~GmV~DF~~lK~~ik~i~~~lDH~~L~~~~~d~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~pTaEnlA~~i~~~ 145 (181)
T 1y13_A 66 DGYVIDFSILKEKVKKVCNKLDHHFILPIYSDVLKFENVKNNIKIICEDNSEYSFPERDCIKLPIKHSSTEEIGQYILNQ 145 (181)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHSSSEEEETTCSSEEEEEETTEEEEEETTSCEEEEEGGGEEEESCSSCCHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHhCChhhhCCCCCchhhhhhccccceeeeccCceeccccccEeECCCCCCCHHHHHHHHHHH
Confidence 57888888888777775544433221 468999999999998
Q ss_pred HHHh
Q psy3468 47 KQGY 50 (68)
Q Consensus 47 ~q~~ 50 (68)
+...
T Consensus 146 L~~~ 149 (181)
T 1y13_A 146 LIEE 149 (181)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8654
No 58
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=39.50 E-value=47 Score=18.62 Aligned_cols=33 Identities=12% Similarity=-0.017 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy3468 8 ITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLC 44 (68)
Q Consensus 8 l~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls 44 (68)
|+.|=--+|+.+| +|...|+..++++.|++.++
T Consensus 42 LTe~HW~vI~flR----~yY~e~~~~P~iR~l~K~~~ 74 (105)
T 3or1_C 42 GSADHQKIIDFLQ----DYYKANGIAPMVRILSKNTG 74 (105)
T ss_dssp CCHHHHHHHHHHH----HHHHHHSSCCCHHHHHHHHC
T ss_pred CCHHHHHHHHHHH----HHHHHHCCCCcHHHHHHHHC
Confidence 3455556777776 46668999999999998775
No 59
>2xgv_A PSIV capsid N-terminal domain; retroviral capsid, viral protein; 2.00A {Microcebus murinus}
Probab=37.04 E-value=35 Score=20.39 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=28.6
Q ss_pred eecchHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy3468 4 SVAGITSDANVLTSELRAIAQRYLIQYNEPIPC 36 (68)
Q Consensus 4 ~~sGl~aD~r~lv~~~r~~a~~y~~~~~~~i~v 36 (68)
++-|..++.+.|-+....||.++-..+-.|+|.
T Consensus 58 ~vgghqaamQ~lkd~INEeAaeWdr~HPgP~p~ 90 (142)
T 2xgv_A 58 VVPGLQADKDMLGAYLEERAREWDAQPQQPLPY 90 (142)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTSSCSSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHhcccCCCCCCC
Confidence 356889999999999999999998888777766
No 60
>3lx3_A 6-pyruvoyl tetrahydrobiopterin synthase; PTS, PTP synthase, PTPS, metal-binding, tetrahydrobiopterin biosynthesis, folate biosynthesis; HET: XTN; 1.55A {Plasmodium vivax} SCOP: d.96.1.2 PDB: 2a0s_A* 3m0n_A* 3lze_A*
Probab=36.25 E-value=31 Score=20.89 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=31.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhC---------------------------------------CCCCHHHHHHHHHHH
Q psy3468 6 AGITSDANVLTSELRAIAQRYLIQYN---------------------------------------EPIPCEQLVACLCDI 46 (68)
Q Consensus 6 sGl~aD~r~lv~~~r~~a~~y~~~~~---------------------------------------~~i~v~~la~~ls~~ 46 (68)
.|++-|...|-+..+.....+-+.+- ..++.|.||+.|.+.
T Consensus 65 ~Gmv~Df~~lk~~~~~i~~~lDH~~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~lLp~~npTaEnlA~~i~~~ 144 (180)
T 3lx3_A 65 DGYVIDFSILKEKVRKVCKQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYILNQ 144 (180)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHSSSEEEETTCSSEEEEEETTEEEEEETTCCEEEEEGGGEEEESCSSCCHHHHHHHHHHH
T ss_pred CCeEEEHHHHHHHHHHHHHcCCccccCCCCCcchhhhhcCCceeeeecccceecCchhheeecCCCCCCHHHHHHHHHHH
Confidence 47777888887777755544433332 368999999999998
Q ss_pred HHHh
Q psy3468 47 KQGY 50 (68)
Q Consensus 47 ~q~~ 50 (68)
+...
T Consensus 145 L~~~ 148 (180)
T 3lx3_A 145 LIEE 148 (180)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8654
No 61
>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} PDB: 3qn0_A 3qn9_A 3qna_A*
Probab=34.78 E-value=43 Score=19.40 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHHHHHHHH--HHHHHhC----CCCCHHHHHHHHHHHHHH
Q psy3468 6 AGITSDANVLTSELRAIAQ--RYLIQYN----EPIPCEQLVACLCDIKQG 49 (68)
Q Consensus 6 sGl~aD~r~lv~~~r~~a~--~y~~~~~----~~i~v~~la~~ls~~~q~ 49 (68)
.|++-|...|-+..+.... +|++-.+ .+++.|.||+.|.+.+..
T Consensus 66 ~GmV~Df~~lk~~~~~vi~~lDH~~Lndv~~~~~pTaEnlA~~i~~~L~~ 115 (138)
T 2oba_A 66 TGWIRDFAEIKAIFKPIYEQLDHNYLNDIPGLENPTSENLCRWIWQQLKP 115 (138)
T ss_dssp TSSSSCHHHHHHHHHHHHHHHTTSBGGGSTTCSSCCHHHHHHHHHHHHGG
T ss_pred CCEEEeHHHHHHHHHHHHHhCCCccchhcCCCCCCCHHHHHHHHHHHHHH
Confidence 5777777777766665443 3333332 468999999999998853
No 62
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=32.66 E-value=45 Score=18.49 Aligned_cols=24 Identities=21% Similarity=0.044 Sum_probs=18.5
Q ss_pred EEeecchHHHHHHHHHHHHHHHHHHH
Q psy3468 2 VCSVAGITSDANVLTSELRAIAQRYL 27 (68)
Q Consensus 2 g~~~sGl~aD~r~lv~~~r~~a~~y~ 27 (68)
-++.+|+++-. |+++++..|+++-
T Consensus 11 L~C~aGmSTsl--lv~km~~~a~~~g 34 (108)
T 3nbm_A 11 VLCAGSGTSAQ--LANAINEGANLTE 34 (108)
T ss_dssp EEESSSSHHHH--HHHHHHHHHHHHT
T ss_pred EECCCCCCHHH--HHHHHHHHHHHCC
Confidence 35678887765 8999999988853
No 63
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=32.30 E-value=79 Score=18.56 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy3468 8 ITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIK 47 (68)
Q Consensus 8 l~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~ 47 (68)
|+.|=--+|+.+| +|..+|+..+++..|++.++..+
T Consensus 62 LTe~HWeVI~flR----~fY~e~~~sP~iR~L~K~~~~~~ 97 (132)
T 1yx3_A 62 LTEEHWDIINFLR----EYYEEYQIAPAVRVLTKAVGKKL 97 (132)
T ss_dssp CCHHHHHHHHHHH----HHHHHHCCCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH----HHHHHHCCCChHHHHHHHHHHHh
Confidence 4455556677765 67778889899999999885554
No 64
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=31.48 E-value=76 Score=18.14 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy3468 8 ITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIK 47 (68)
Q Consensus 8 l~aD~r~lv~~~r~~a~~y~~~~~~~i~v~~la~~ls~~~ 47 (68)
|+.|---+|+.+| +|..+|+..+++..|++.++..+
T Consensus 46 LTe~HW~VI~flR----~~Y~e~~~~P~iR~l~K~~~~~~ 81 (115)
T 1sau_A 46 LTEEHWKIIRYLR----DYFIKYGVAPPVRMLVKHCKKEV 81 (115)
T ss_dssp CCHHHHHHHHHHH----HHHHHHSSCCCHHHHHHHHHHHT
T ss_pred ECHHHHHHHHHHH----HHHHHHCCCCcHHHHHHHHHHHh
Confidence 4556666777775 67778889899999999884443
No 65
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=31.32 E-value=31 Score=21.56 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCCCCceecc
Q psy3468 33 PIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNK 65 (68)
Q Consensus 33 ~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~ 65 (68)
.++=+.++ .+-+++.+|.+.||.|..=|.+++
T Consensus 165 ~L~D~~l~-~l~~fi~~F~~~WG~~yIqFsI~L 196 (197)
T 3gr0_A 165 ALDDVEIL-RARQFVDSYYRTWGGRYVQFAIEL 196 (197)
T ss_dssp CCCHHHHH-HHHHHHHHHHHHHCSSSEEEEEEE
T ss_pred CCCHHHHH-HHHHHHHHHHHhhCccEEEEEEee
Confidence 34444444 688999999999999988888775
No 66
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=29.66 E-value=40 Score=14.35 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhhcC
Q psy3468 40 VACLCDIKQGYTQYG 54 (68)
Q Consensus 40 a~~ls~~~q~~Tq~~ 54 (68)
.+.+=.++|+|.|+-
T Consensus 4 MkDvlql~qQy~qsh 18 (26)
T 1kdl_A 4 MKDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666778888764
No 67
>1vzm_A Osteocalcin; calcium-binding protein, bone GLA protein, BGP, hydroxyapatite, gamma carboxyl glutamic acid, vitamin K, bone, mineralization; HET: CGU; 1.4A {Argyrosomus regius}
Probab=28.02 E-value=58 Score=15.67 Aligned_cols=27 Identities=19% Similarity=0.553 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCCCCCc
Q psy3468 32 EPIPCEQLVACLCDIKQGYTQYGGQSIIPF 61 (68)
Q Consensus 32 ~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~ 61 (68)
...+.+.+|...+-. ..|+.+.|.. ||
T Consensus 19 ~~~~C~~~A~~~G~~-~AY~ryfG~~--~~ 45 (45)
T 1vzm_A 19 TNMACDEMADAQGIV-AAYQAFYGPI--PF 45 (45)
T ss_dssp TCHHHHHHHHHHHHH-HHHHHHHCSC--CC
T ss_pred cchhHHHHHHHHHHH-HHHHHHcCCC--CC
Confidence 455778888777665 6999999888 86
No 68
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=27.34 E-value=54 Score=15.08 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=14.5
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy3468 31 NEPIPCEQLVACLCDIKQ 48 (68)
Q Consensus 31 ~~~i~v~~la~~ls~~~q 48 (68)
|+.-+++.|++..+++-|
T Consensus 9 G~dA~~Eela~Y~~~Lrh 26 (36)
T 2bf9_A 9 GDDAPVEDLIRFYNDLQQ 26 (36)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 566789999999888754
No 69
>3d7j_A Uncharacterized protein SCO6650; T-fold, unknown function; 1.45A {Streptomyces coelicolor}
Probab=27.17 E-value=42 Score=19.76 Aligned_cols=47 Identities=21% Similarity=0.173 Sum_probs=32.3
Q ss_pred cchHHHHHHHHHHHHHHHH--HHHHHh------CCCCCHHHHHHHHHHHHHHhhh
Q psy3468 6 AGITSDANVLTSELRAIAQ--RYLIQY------NEPIPCEQLVACLCDIKQGYTQ 52 (68)
Q Consensus 6 sGl~aD~r~lv~~~r~~a~--~y~~~~------~~~i~v~~la~~ls~~~q~~Tq 52 (68)
.|++-|...|-+..+.... +|++-. +.+++.|.||+.|-+.+...-.
T Consensus 66 ~GmVvDF~~lK~~ik~i~~~lDH~~Ln~~p~f~~~npTaEnlA~~i~~~L~~~L~ 120 (152)
T 3d7j_A 66 DNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVH 120 (152)
T ss_dssp TSSSSCHHHHHHHHHHHHHTTTTEEGGGCGGGTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHhcCCcccccccccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 4788888888877776443 233222 2468999999999998876433
No 70
>2xde_A GAG polyprotein, HIV-1 capsid; AIDS, viral protein; HET: 1B0; 1.40A {Human immunodeficiency virus 1} PDB: 1m9y_C 2x2d_D* 1m9x_C 1m9e_C 1m9f_C 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C 2x83_A 4e91_A* 4e92_A* 2pwo_A 2pwm_A 2gon_A 1ak4_C 2jpr_A* 1m9d_C 4dga_C ...
Probab=26.68 E-value=1.1e+02 Score=18.32 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=28.3
Q ss_pred eecchHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHH
Q psy3468 4 SVAGITSDANVLTSELRAIAQRYLIQYN-EPIPCEQL 39 (68)
Q Consensus 4 ~~sGl~aD~r~lv~~~r~~a~~y~~~~~-~~i~v~~l 39 (68)
++-|..++.+.|.+....||.++-..+- +++..+.+
T Consensus 59 ~vgghqaamQ~lkd~INEeAaeWdr~HP~r~PrgsdI 95 (145)
T 2xde_A 59 TVGGHQAAMQMLKETINEEAAEWDRLHPVGEPRGSDI 95 (145)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHCSSSSCCHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccc
Confidence 3568899999999999999999988876 34454444
No 71
>2g64_A Putative 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; 1.80A {Caenorhabditis elegans} SCOP: d.96.1.2
Probab=26.14 E-value=27 Score=20.23 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=29.8
Q ss_pred cchHHHHHHHHHHHHHHHH--HHHHHh-------CCCCCHHHHHHHHHHHHHH
Q psy3468 6 AGITSDANVLTSELRAIAQ--RYLIQY-------NEPIPCEQLVACLCDIKQG 49 (68)
Q Consensus 6 sGl~aD~r~lv~~~r~~a~--~y~~~~-------~~~i~v~~la~~ls~~~q~ 49 (68)
.|++-|...|-+..+.... +|++-. +.+++.+.||..|.+.+..
T Consensus 62 ~Gmv~Df~~lk~~~~~i~~~lDH~~Ln~dv~~f~~~~pT~EnlA~~i~~~l~~ 114 (140)
T 2g64_A 62 SGMVYDLAKLKKEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKS 114 (140)
T ss_dssp TCCSSCHHHHHHHHHHHHHTTTTEEHHHHCGGGGTSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHhcCCCcccchhhcccCCCCCCHHHHHHHHHHHHHH
Confidence 5777777777777663322 333322 3478999999999998854
No 72
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=26.08 E-value=53 Score=15.10 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=14.1
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy3468 31 NEPIPCEQLVACLCDIKQ 48 (68)
Q Consensus 31 ~~~i~v~~la~~ls~~~q 48 (68)
|+.-+++.|++..+++-|
T Consensus 9 G~dA~pEela~Y~~~Lr~ 26 (36)
T 1bba_A 9 GDNATPEQMAQYAAELRR 26 (36)
T ss_dssp SSCSSTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 566788999998888754
No 73
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=25.40 E-value=41 Score=18.69 Aligned_cols=34 Identities=6% Similarity=0.003 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHH
Q psy3468 11 DANVLTSELRAIAQRYLIQYNEPIP-CEQLVACLC 44 (68)
Q Consensus 11 D~r~lv~~~r~~a~~y~~~~~~~i~-v~~la~~ls 44 (68)
=...+.+.++....+-.+.-|..+| ...||+.++
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~ 48 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLA 48 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHC
Confidence 3456778888888888888888886 888887653
No 74
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=23.94 E-value=75 Score=15.63 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH
Q psy3468 20 RAIAQRYLIQYNEPIPCEQLVACLC 44 (68)
Q Consensus 20 r~~a~~y~~~~~~~i~v~~la~~ls 44 (68)
+.+..+..-..+.++++..||+.+.
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lg 36 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQ 36 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHC
Confidence 3344444444567899988887653
No 75
>2xgu_A Relik capsid N-terminal domain; viral protein, retroviral capsid; 1.50A {Oryctolagus cuniculus} PDB: 2xgy_A
Probab=23.76 E-value=87 Score=18.79 Aligned_cols=29 Identities=7% Similarity=0.145 Sum_probs=25.1
Q ss_pred eecchHHHHHHHHHHHHHHHHHHHHHhCC
Q psy3468 4 SVAGITSDANVLTSELRAIAQRYLIQYNE 32 (68)
Q Consensus 4 ~~sGl~aD~r~lv~~~r~~a~~y~~~~~~ 32 (68)
++-|..++.+.|-+....||.+|...+-.
T Consensus 58 ~vgghqaamQ~lkd~INEeAaeWdr~HP~ 86 (149)
T 2xgu_A 58 VTPGFAAEKQLVIDKIKEKAIAWDEMHPP 86 (149)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hccccHHHHHHHHHHHHHHHHHhCccCCC
Confidence 35688999999999999999999888754
No 76
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=23.74 E-value=90 Score=16.48 Aligned_cols=15 Identities=13% Similarity=0.454 Sum_probs=12.3
Q ss_pred HhCCCCCHHHHHHHH
Q psy3468 29 QYNEPIPCEQLVACL 43 (68)
Q Consensus 29 ~~~~~i~v~~la~~l 43 (68)
.+.++++++.||+.+
T Consensus 19 ~~~~~~~~~~lA~~~ 33 (113)
T 3oio_A 19 NIEEPLSTDDIAYYV 33 (113)
T ss_dssp CSSSCCCHHHHHHHH
T ss_pred hhcCCCCHHHHHHHH
Confidence 457889999999865
No 77
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=23.39 E-value=1.2e+02 Score=17.87 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=27.2
Q ss_pred ecchHHHHHHHHHHHHHHHHHHH--HHhCCCCCHHHHHH
Q psy3468 5 VAGITSDANVLTSELRAIAQRYL--IQYNEPIPCEQLVA 41 (68)
Q Consensus 5 ~sGl~aD~r~lv~~~r~~a~~y~--~~~~~~i~v~~la~ 41 (68)
+.||.|+++..++.+-.....-+ ..-|.+++.+.|=.
T Consensus 77 i~~L~Peak~Fv~kli~~~r~l~~~~~~G~k~~~~~lK~ 115 (140)
T 2w9y_A 77 LDGLSPAAVEYAKKLIHMVTTTLCSLTVGKPIDDADAKR 115 (140)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCTHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 35889999999987766655444 44899999987644
No 78
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=22.98 E-value=28 Score=15.34 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=7.9
Q ss_pred cCCCCCCCce
Q psy3468 53 YGGQSIIPFR 62 (68)
Q Consensus 53 ~~~~R~~P~g 62 (68)
++|.||=|||
T Consensus 16 rggnrfepY~ 25 (30)
T 2ot8_C 16 RGGNRFEPYA 25 (30)
T ss_pred cCCccccccc
Confidence 4788888886
No 79
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=22.44 E-value=57 Score=20.79 Aligned_cols=35 Identities=9% Similarity=0.111 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCCCCCceeccc
Q psy3468 31 NEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKT 66 (68)
Q Consensus 31 ~~~i~v~~la~~ls~~~q~~Tq~~~~R~~P~g~~~~ 66 (68)
...++-+.+. .+-+++..|.+.||.|+.=|++++-
T Consensus 163 ~~~L~D~~l~-~l~~fi~~f~~~WG~~~IqFsI~L~ 197 (227)
T 3gr1_A 163 QGALDDVEIL-RARQFVDSYYRTWGGRYVQFAIELK 197 (227)
T ss_dssp CSCCCHHHHH-HHHHHHHHHHHHHCSSSEEEEECCC
T ss_pred cCCCCHHHHH-HHHHHHHHHHHHhCccEEEEEEEec
Confidence 3456656555 5889999999999999888888763
No 80
>1rrz_A Glycogen synthesis protein GLGS; all-helical domain, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.7.10.1
Probab=22.08 E-value=67 Score=17.56 Aligned_cols=25 Identities=4% Similarity=0.024 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHH
Q psy3468 24 QRYLIQYNEPIPCEQLVACLCDIKQ 48 (68)
Q Consensus 24 ~~y~~~~~~~i~v~~la~~ls~~~q 48 (68)
.-|+..++.|++++.+...+++-..
T Consensus 38 vAfmEr~n~pV~~d~Ve~e~pee~R 62 (86)
T 1rrz_A 38 FARMHAEGRPVDILAVTGNMDEEHR 62 (86)
T ss_dssp HHHHHHHTCCCCHHHHHHHCCHHHH
T ss_pred HHHHHHcCCCCCHHHhcccCCHHHH
Confidence 4567778999999999887665543
No 81
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=21.93 E-value=50 Score=17.92 Aligned_cols=33 Identities=9% Similarity=-0.075 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHH
Q psy3468 12 ANVLTSELRAIAQRYLIQYNEPI-PCEQLVACLC 44 (68)
Q Consensus 12 ~r~lv~~~r~~a~~y~~~~~~~i-~v~~la~~ls 44 (68)
...+.+.++....+-.+.-|..+ +...||+.++
T Consensus 11 ~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~ 44 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQ 44 (113)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHC
Confidence 45677888888888788888888 5777777653
No 82
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.36 E-value=1.1e+02 Score=16.30 Aligned_cols=19 Identities=16% Similarity=-0.020 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHhhh
Q psy3468 34 IPCEQLVACLCDIKQGYTQ 52 (68)
Q Consensus 34 i~v~~la~~ls~~~q~~Tq 52 (68)
+++..+.+.+-+++.++||
T Consensus 2 ~~~~gmgkevEnLi~EN~e 20 (77)
T 2w83_C 2 MDPEFMGREVENLILENTQ 20 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHHHHHHHHHHHH
Confidence 5777888888888888887
Done!