RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3468
(68 letters)
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 82.2 bits (204), Expect = 2e-21
Identities = 12/62 (19%), Positives = 27/62 (43%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
+ C+++G+ +DA L + R Q + YNE + E + + ++ + +
Sbjct: 74 IGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAM 133
Query: 61 FR 62
R
Sbjct: 134 SR 135
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 80.4 bits (199), Expect = 1e-20
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ + +G+ +DA VL R AQ Y + Y E I E L +CDIKQ YTQ+GG
Sbjct: 78 VAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGG 132
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 79.7 bits (197), Expect = 2e-20
Identities = 31/55 (56%), Positives = 38/55 (69%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ +VAG+T+DA +L + R AQ YL YNE IP E LV L DIKQGYTQ+GG
Sbjct: 72 IAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGG 126
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 79.2 bits (196), Expect = 2e-20
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ +G+ +DA VL R AQ+ + Y + E LV + D Q YTQYGG
Sbjct: 74 VAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGG 128
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 78.8 bits (195), Expect = 3e-20
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
M S+AG+ DA VL++ LR + +N + E+ LCD Q TQ G
Sbjct: 69 MGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYG 123
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 78.5 bits (194), Expect = 5e-20
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
+ C+++G+T+DA + R A + + Y+E I E L +CD+ + +
Sbjct: 66 IGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERL 125
Query: 61 FRR 63
R
Sbjct: 126 MSR 128
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 78.4 bits (194), Expect = 6e-20
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ C + G+T+D+ R A + +Y IP + L + DI Q YTQ
Sbjct: 76 IGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE 130
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 78.1 bits (193), Expect = 7e-20
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+V S +G+ +D+ +L + R AQ + + +P+ E L + ++Q YTQ GG
Sbjct: 69 VVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGG 123
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 78.1 bits (193), Expect = 8e-20
Identities = 46/55 (83%), Positives = 49/55 (89%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
M CSVAGITSDANVLT+ELR IAQRYL+QY EPIPCEQLV LCDIKQ YTQ+GG
Sbjct: 72 MACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGG 126
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 78.6 bits (194), Expect = 9e-20
Identities = 14/55 (25%), Positives = 20/55 (36%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ C +G+ D L + R A + Y PIP L Q +T Y
Sbjct: 74 IGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNS 128
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 77.7 bits (192), Expect = 9e-20
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ + +G+ +DA VL R AQ + Y+ PI ++L +CD KQ YTQYGG
Sbjct: 74 ICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGG 128
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 77.6 bits (192), Expect = 9e-20
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ V G DA +A A + +Y +PC+ L + ++ Q YTQ
Sbjct: 70 IGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAY 124
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 77.7 bits (192), Expect = 1e-19
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ + AG+T+DA ++ + R Q + + +P+ E + + +KQ YTQ G
Sbjct: 69 VCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNG 123
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 77.3 bits (191), Expect = 1e-19
Identities = 14/55 (25%), Positives = 20/55 (36%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ C +G+ D L + R A + Y PIP L Q +T Y
Sbjct: 70 IGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNS 124
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 77.4 bits (191), Expect = 1e-19
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ +VAG+ +DA L R A + + IP + L + YT Y
Sbjct: 73 VGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSA 127
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 76.8 bits (190), Expect = 2e-19
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ +G+ D VL R +AQ+Y + Y EPIP QLV + + Q YTQ GG
Sbjct: 71 IGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGG 125
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 76.9 bits (190), Expect = 2e-19
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ S+AG+T+DA +L + +R ++ P+P +LV+ + Q TQ G
Sbjct: 70 IGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYG 124
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 73.4 bits (181), Expect = 4e-18
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQ-RYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ +G+ D VL + R +A Y Y E P + LV+ + I Q TQ GG
Sbjct: 71 IGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGG 126
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 61.9 bits (151), Expect = 7e-14
Identities = 9/59 (15%), Positives = 21/59 (35%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSII 59
+ C AG+ +D + T + + + + + L Y + G S++
Sbjct: 41 IYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLV 99
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_H* 3une_H
Length = 234
Score = 47.3 bits (113), Expect = 2e-08
Identities = 9/59 (15%), Positives = 22/59 (37%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSII 59
+ C AG +D ++ T + + + + + L + Y Y G +++
Sbjct: 41 IYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALV 99
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 46.1 bits (109), Expect = 5e-08
Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYN-EPIPCEQLVACLCD-IKQGYTQ----YG 54
+ + G ++ L A Y+ + L + +T+ Y
Sbjct: 60 LGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYE 119
Query: 55 GQSII 59
+ +
Sbjct: 120 VEICV 124
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 43.8 bits (104), Expect = 3e-07
Identities = 9/59 (15%), Positives = 22/59 (37%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSII 59
+ C+ AG +D +T + + + + + + + L Y + G +I
Sbjct: 41 IWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLI 99
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 43.1 bits (102), Expect = 7e-07
Identities = 9/59 (15%), Positives = 22/59 (37%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSII 59
+ C+ AG +D +T + + + + + + + L Y + G +I
Sbjct: 70 IWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLI 128
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 41.1 bits (96), Expect = 4e-06
Identities = 8/58 (13%), Positives = 16/58 (27%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSI 58
+AG + A + Y P+ + L + +G Q +
Sbjct: 98 TATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGL 155
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 41.0 bits (96), Expect = 5e-06
Identities = 9/58 (15%), Positives = 16/58 (27%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSI 58
+AG A L + Y P+ + L + +G Q +
Sbjct: 41 SAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGL 98
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 39.9 bits (94), Expect = 8e-06
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYG 54
++AG+ DA VL ++A + Y +Q +P E + L ++
Sbjct: 49 TGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMP 102
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 37.2 bits (86), Expect = 8e-05
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYN-EPIPCEQLVACLCDIKQGYTQYGGQSII 59
+ + AG ++ + L A Y+ + QL +
Sbjct: 60 VGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAK--- 116
Query: 60 PF 61
P+
Sbjct: 117 PY 118
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 34.5 bits (80), Expect = 8e-04
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYG 54
++ ++AG +D + L + Y ++ E I L ++ Y G
Sbjct: 41 LLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMG 94
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB;
2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 34.5 bits (80), Expect = 9e-04
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYG 54
M + AG DA L ++ A Y I+ + ++ Y +
Sbjct: 41 MAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFP 94
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 34.0 bits (78), Expect = 0.001
Identities = 9/54 (16%), Positives = 22/54 (40%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYG 54
++ ++AG +D + L + + + ++ E I L ++ Y G
Sbjct: 116 LLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAG 169
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 32.2 bits (74), Expect = 0.005
Identities = 9/54 (16%), Positives = 22/54 (40%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYG 54
++ ++AG +D + L + + + ++ E I L ++ Y G
Sbjct: 41 LLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAG 94
Score = 31.8 bits (73), Expect = 0.007
Identities = 2/54 (3%), Positives = 9/54 (16%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYG 54
+ + A + + R + + +
Sbjct: 42 IGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDR 95
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 31.2 bits (71), Expect = 0.013
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNE-PIPCEQLVACLCDIKQGYTQYG 54
+V S G +D + L + + Y +N+ + + + G +
Sbjct: 50 IVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFP 104
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.014
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 5 VAGITSDANVLTSELRAIAQRYL---IQYNEPIPCEQLVACLCDIKQG----YTQYGGQ 56
A + + + + + + + Y+ I P + A + +G +GGQ
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Score = 26.6 bits (58), Expect = 0.72
Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 45/95 (47%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCE------------QLVACLCDIKQ 48
M+ S++ +T + Q Y+ + N +P LV
Sbjct: 338 ML-SISNLT----------QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS------ 380
Query: 49 GYTQ--YG--------------GQSIIPFRRNKTK 67
G Q YG QS IPF K K
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Score = 25.4 bits (55), Expect = 1.6
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 18 ELRAIAQRY------LIQYNEPIPCEQLVACLCDIKQGYTQ 52
ELR + Q Y LI+++ +L+ D ++ +TQ
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAET-LSELIRTTLDAEKVFTQ 211
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_N* 3une_N
Length = 205
Score = 28.7 bits (65), Expect = 0.080
Identities = 10/59 (16%), Positives = 21/59 (35%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSII 59
+ C +G +D + + + I+ NEP + ++ Y + II
Sbjct: 41 IFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGII 99
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 28.7 bits (65), Expect = 0.082
Identities = 8/55 (14%), Positives = 19/55 (34%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ S AG D ++A Q Y I+ + + + + + + +
Sbjct: 42 TLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRR 96
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 27.9 bits (63), Expect = 0.15
Identities = 9/59 (15%), Positives = 23/59 (38%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSII 59
+ C+++G +DA + + + ++ EP + +I Y + +I
Sbjct: 41 IFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLI 99
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 27.6 bits (62), Expect = 0.25
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDI 46
V +G D LT + A + Y N+ + + A L I
Sbjct: 50 TVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTI 95
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 27.1 bits (61), Expect = 0.29
Identities = 7/54 (12%), Positives = 20/54 (37%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYG 54
+ +AG+ +D + L+ Y ++ I L++ + ++
Sbjct: 49 LYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGP 102
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 26.8 bits (60), Expect = 0.49
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPC 36
+ C +G +D + ++ + Y QY P
Sbjct: 50 IWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTE 85
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 26.0 bits (58), Expect = 0.90
Identities = 4/55 (7%), Positives = 12/55 (21%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
++ G D ++ Q Y ++ + +
Sbjct: 42 ILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRT 96
>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related,
transferase; 2.00A {Saccharomyces cerevisiae} PDB:
2if8_A*
Length = 363
Score = 24.1 bits (51), Expect = 4.3
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 42 CLCDIKQGYTQYGGQSIIPFRRNKTK 67
+ DIK G T Y ++ + R +
Sbjct: 128 NILDIKLGKTLYDSKASLEKRERMKR 153
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex,
transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae}
PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Length = 456
Score = 23.3 bits (51), Expect = 8.2
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCD-IKQG 49
+ GI+ L L A + L + + +L++ ++ G
Sbjct: 224 YLTLSDGISRPDGTLAETLSAQEAQSLAE-HAASETRRLISSAVAALEGG 272
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.413
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 972,107
Number of extensions: 41363
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 45
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)