RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3468
(68 letters)
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 47.3 bits (112), Expect = 7e-09
Identities = 12/62 (19%), Positives = 27/62 (43%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
+ C+++G+ +DA L + R Q + YNE + E + + ++ + +
Sbjct: 67 IGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAM 126
Query: 61 FR 62
R
Sbjct: 127 SR 128
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 45.8 bits (108), Expect = 2e-08
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYG 54
+ +VAG+ +DA L R A + + IP + L + YT Y
Sbjct: 73 VGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 126
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 45.8 bits (108), Expect = 3e-08
Identities = 14/56 (25%), Positives = 20/56 (35%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQ 56
+ C +G+ D L + R A + Y PIP L Q +T Y
Sbjct: 70 IGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSV 125
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 44.3 bits (104), Expect = 9e-08
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQ 56
+ +G+ +DA VL R AQ+ + Y + E LV + D Q YTQYGG
Sbjct: 62 VAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGV 117
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 42.7 bits (100), Expect = 4e-07
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
M S+AG+ DA VL++ LR + +N + E+ LCD Q TQ G
Sbjct: 69 MGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYG 123
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 40.8 bits (95), Expect = 2e-06
Identities = 31/55 (56%), Positives = 38/55 (69%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGG 55
+ +VAG+T+DA +L + R AQ YL YNE IP E LV L DIKQGYTQ+GG
Sbjct: 72 IAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGG 126
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 40.0 bits (93), Expect = 3e-06
Identities = 5/57 (8%), Positives = 12/57 (21%), Gaps = 1/57 (1%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNE-PIPCEQLVACLCDIKQGYTQYGGQ 56
+ + G ++ L A Y+ + L +
Sbjct: 52 LGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPK 108
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 40.0 bits (93), Expect = 3e-06
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQ 56
+ C + G+T+D+ R A + +Y IP + L + DI Q YTQ
Sbjct: 75 IGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEM 130
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 40.1 bits (93), Expect = 3e-06
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIP 60
+ C+++G+T+DA + R A + + Y+E I E L +CD+ + +
Sbjct: 66 IGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERL 125
Query: 61 FRR 63
R
Sbjct: 126 MSR 128
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 39.7 bits (92), Expect = 5e-06
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQ 56
+ V G DA +A A + +Y +PC+ L + ++ Q YTQ
Sbjct: 70 IGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYM 125
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 38.9 bits (90), Expect = 7e-06
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQ 56
+ + AG+T+DA ++ + R Q + + +P+ E + + +KQ YTQ G+
Sbjct: 68 VCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR 123
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 35.8 bits (82), Expect = 9e-05
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQ 56
+V S +G+ +D+ +L + R AQ + + +P+ E L + ++Q YTQ GG
Sbjct: 69 VVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGV 124
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 35.1 bits (80), Expect = 2e-04
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQ-RYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQ 56
+ +G+ D VL + R +A Y Y E P + LV+ + I Q TQ GG
Sbjct: 71 IGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGV 127
>d1w2fa_ d.143.1.3 (A:) Inositol 1,4,5-trisphosphate 3-kinase A,
IP3K A {Human (Homo sapiens) [TaxId: 9606]}
Length = 276
Score = 22.7 bits (48), Expect = 5.4
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 24 QRYLIQYNEPIPCEQLVACLCDIKQGYTQYGGQSIIPFRRNKTK 67
+ YL + + C+ D K G Y + + R
Sbjct: 58 ESYLQLQDLLDGFDG--PCVLDCKMGVRTYLEEELTKARERPKL 99
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231
{Prochlorococcus marinus [TaxId: 1219]}
Length = 222
Score = 22.5 bits (48), Expect = 6.0
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 1 MVCSVAGITSDANVLTSELRAIAQRYLIQYNE 32
M+ VAG DA VL + + + +LI Y E
Sbjct: 174 MLDQVAG---DAAVLQMDKEDLIEDFLIAYQE 202
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.413
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 234,181
Number of extensions: 7842
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 15
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)