BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3469
         (154 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JLN|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family
           Transporter
 pdb|2JLO|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family
           Transporter, In A Closed Conformation With
           Benzylhydantoin
          Length = 501

 Score = 28.9 bits (63), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 8   PAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLAN 67
           PA  L++ +YT C  +  V        F   V     V  L +  +FAG+L +F N LA+
Sbjct: 315 PAANLLSPAYTLCSTFPRV------FTFKTGVIVSAVVGLLMMPWQFAGVLNTFLNLLAS 368

Query: 68  LAGLLAPII 76
             G LA I+
Sbjct: 369 ALGPLAGIM 377


>pdb|3BXV|A Chain A, Crystal Structure Studies On Sulfur Oxygenase Reductase
          From Acidianus Tengchongensis
          Length = 308

 Score = 28.5 bits (62), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 7  GPAVCLVAAS---YTGCDPYLTVGILTIGLGFNGA 38
          GP VC+V A    + G   ++ +G+L  G  F GA
Sbjct: 27 GPKVCMVTARHPGFVGFQNHVQIGVLPFGERFGGA 61


>pdb|2X79|A Chain A, Inward Facing Conformation Of Mhp1
          Length = 501

 Score = 28.1 bits (61), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 8   PAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLAN 67
           PA  L++ +YT C  +  V        F   V     V  L    +FAG+L +F N LA+
Sbjct: 315 PAANLLSPAYTLCSTFPRV------FTFKTGVIVSAVVGLLXXPWQFAGVLNTFLNLLAS 368

Query: 68  LAGLLAPI 75
             G LA I
Sbjct: 369 ALGPLAGI 376


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,356,051
Number of Sequences: 62578
Number of extensions: 159731
Number of successful extensions: 269
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 6
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)