Query psy3469
Match_columns 154
No_of_seqs 123 out of 1146
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 17:28:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2532|consensus 99.7 1.4E-16 3.1E-21 133.0 7.5 124 1-125 336-460 (466)
2 COG2271 UhpC Sugar phosphate p 99.4 4.5E-13 9.8E-18 109.5 5.4 127 2-133 98-228 (448)
3 TIGR00894 2A0114euk Na(+)-depe 99.3 2.4E-11 5.3E-16 100.5 10.9 105 21-126 360-464 (465)
4 TIGR00893 2A0114 d-galactonate 99.0 7.7E-09 1.7E-13 81.8 10.7 107 4-115 65-172 (399)
5 PRK11663 regulatory protein Uh 98.9 1.5E-08 3.2E-13 83.5 11.5 108 4-116 94-202 (434)
6 TIGR00892 2A0113 monocarboxyla 98.9 1.2E-09 2.5E-14 90.8 4.3 69 35-106 346-415 (455)
7 PF07690 MFS_1: Major Facilita 98.8 5.1E-08 1.1E-12 76.5 10.7 104 4-112 68-172 (352)
8 TIGR00880 2_A_01_02 Multidrug 98.8 1.3E-07 2.7E-12 64.4 11.0 101 7-112 37-138 (141)
9 TIGR00881 2A0104 phosphoglycer 98.8 1.1E-08 2.5E-13 80.8 6.3 111 4-119 66-178 (379)
10 PLN00028 nitrate transmembrane 98.7 6E-08 1.3E-12 81.1 8.9 91 21-116 347-437 (476)
11 PRK11102 bicyclomycin/multidru 98.7 1.9E-07 4.1E-12 74.7 11.4 106 4-114 62-168 (377)
12 TIGR00895 2A0115 benzoate tran 98.7 2.9E-08 6.2E-13 79.1 6.3 107 4-115 88-195 (398)
13 TIGR00900 2A0121 H+ Antiporter 98.7 1.7E-07 3.8E-12 73.8 10.4 87 22-112 92-179 (365)
14 PRK10054 putative transporter; 98.7 1.3E-07 2.9E-12 77.1 9.9 103 4-112 79-182 (395)
15 TIGR00710 efflux_Bcr_CflA drug 98.7 1.3E-07 2.7E-12 75.5 9.6 106 4-114 76-182 (385)
16 PRK10489 enterobactin exporter 98.7 2.5E-07 5.5E-12 75.4 11.5 103 6-113 297-400 (417)
17 TIGR00890 2A0111 Oxalate/Forma 98.7 2.1E-07 4.5E-12 73.5 10.7 108 4-116 74-181 (377)
18 PRK14995 methyl viologen resis 98.7 4.4E-07 9.6E-12 76.1 12.9 107 4-115 77-185 (495)
19 TIGR01299 synapt_SV2 synaptic 98.7 2E-07 4.3E-12 82.2 10.9 103 3-111 630-733 (742)
20 TIGR02332 HpaX 4-hydroxyphenyl 98.7 2.3E-07 5E-12 76.1 10.7 113 4-117 79-194 (412)
21 PRK10473 multidrug efflux syst 98.7 4.1E-07 8.8E-12 73.5 11.7 105 5-114 75-180 (392)
22 PRK10213 nepI ribonucleoside t 98.6 5.3E-07 1.2E-11 73.5 12.0 100 4-108 91-191 (394)
23 PRK05122 major facilitator sup 98.6 4.2E-07 9.1E-12 73.5 11.2 105 6-115 287-392 (399)
24 PRK03545 putative arabinose tr 98.6 4.9E-07 1.1E-11 73.1 11.0 105 4-113 80-185 (390)
25 PRK11646 multidrug resistance 98.6 6.3E-07 1.4E-11 73.2 11.3 103 4-112 82-185 (400)
26 TIGR00712 glpT glycerol-3-phos 98.6 4.3E-07 9.2E-12 74.9 10.4 79 36-117 132-211 (438)
27 TIGR00711 efflux_EmrB drug res 98.6 5.3E-07 1.1E-11 74.5 10.4 105 4-113 73-178 (485)
28 PRK12382 putative transporter; 98.6 7.3E-07 1.6E-11 72.0 10.7 103 5-112 286-389 (392)
29 TIGR00894 2A0114euk Na(+)-depe 98.6 3.2E-07 7E-12 75.9 8.4 78 36-116 145-223 (465)
30 COG2814 AraJ Arabinose efflux 98.5 9.9E-07 2.1E-11 72.4 10.9 103 6-113 86-189 (394)
31 TIGR00924 yjdL_sub1_fam amino 98.5 4.7E-07 1E-11 75.9 9.1 104 4-112 85-192 (475)
32 KOG2532|consensus 98.5 4.3E-07 9.3E-12 76.3 8.7 112 4-118 109-222 (466)
33 PRK11551 putative 3-hydroxyphe 98.5 1.4E-06 3E-11 70.5 11.5 106 5-115 87-193 (406)
34 PRK03699 putative transporter; 98.5 1.7E-06 3.6E-11 70.3 11.9 101 5-109 79-180 (394)
35 TIGR00892 2A0113 monocarboxyla 98.5 6.1E-07 1.3E-11 74.6 9.1 68 41-112 127-194 (455)
36 TIGR00887 2A0109 phosphate:H+ 98.5 1.1E-06 2.4E-11 73.8 10.5 91 26-117 119-229 (502)
37 PRK09874 drug efflux system pr 98.5 7E-07 1.5E-11 72.1 8.8 76 33-112 322-398 (408)
38 TIGR00891 2A0112 putative sial 98.5 9.4E-07 2E-11 70.8 9.4 98 5-105 84-182 (405)
39 TIGR00899 2A0120 sugar efflux 98.5 2.3E-06 4.9E-11 68.1 11.3 72 40-115 105-179 (375)
40 PRK15402 multidrug efflux syst 98.5 2E-06 4.4E-11 69.8 11.0 105 5-114 85-190 (406)
41 TIGR00899 2A0120 sugar efflux 98.5 1.2E-06 2.6E-11 69.8 9.5 87 21-111 287-373 (375)
42 PRK11551 putative 3-hydroxyphe 98.5 2.4E-06 5.3E-11 69.1 11.4 71 39-112 325-396 (406)
43 PRK10091 MFS transport protein 98.5 2.5E-06 5.5E-11 68.9 11.4 104 4-112 74-178 (382)
44 KOG2504|consensus 98.5 3.7E-07 8E-12 77.4 6.8 106 3-112 370-476 (509)
45 PRK15403 multidrug efflux syst 98.5 3.7E-06 8.1E-11 69.0 12.3 106 4-114 87-193 (413)
46 PRK10504 putative transporter; 98.5 3.2E-06 7E-11 70.0 11.9 103 6-113 83-186 (471)
47 PRK15462 dipeptide/tripeptide 98.4 1.4E-06 3.1E-11 73.6 9.5 74 34-111 112-188 (493)
48 PRK11010 ampG muropeptide tran 98.4 3E-06 6.5E-11 71.3 11.4 80 30-113 324-404 (491)
49 PRK10642 proline/glycine betai 98.4 4.4E-06 9.6E-11 70.0 12.3 72 37-111 357-429 (490)
50 TIGR00901 2A0125 AmpG-related 98.4 2E-06 4.3E-11 68.5 9.7 78 36-113 97-179 (356)
51 PRK03893 putative sialic acid 98.4 1.7E-06 3.8E-11 71.8 9.7 63 41-107 385-448 (496)
52 PRK09556 uhpT sugar phosphate 98.4 2E-06 4.3E-11 71.5 9.8 69 44-112 371-449 (467)
53 TIGR00889 2A0110 nucleoside tr 98.4 5.1E-06 1.1E-10 68.5 12.0 77 37-113 323-403 (418)
54 PRK15011 sugar efflux transpor 98.4 2.7E-06 5.8E-11 69.1 10.2 87 21-111 304-390 (393)
55 PRK09874 drug efflux system pr 98.4 2.2E-06 4.8E-11 69.1 9.6 72 40-115 124-196 (408)
56 PRK09705 cynX putative cyanate 98.4 5.9E-06 1.3E-10 67.3 12.1 104 3-110 79-182 (393)
57 PRK11652 emrD multidrug resist 98.4 3.8E-06 8.2E-11 67.9 10.3 105 5-114 80-185 (394)
58 PRK11663 regulatory protein Uh 98.4 2.3E-06 5.1E-11 70.5 8.9 69 44-116 359-428 (434)
59 cd06174 MFS The Major Facilita 98.4 3.6E-06 7.8E-11 65.6 9.6 102 4-110 248-350 (352)
60 KOG4686|consensus 98.4 5.3E-06 1.1E-10 66.0 10.4 99 21-122 354-453 (459)
61 TIGR00893 2A0114 d-galactonate 98.4 3.8E-06 8.3E-11 66.3 9.8 78 29-110 319-397 (399)
62 TIGR00898 2A0119 cation transp 98.4 5.3E-06 1.1E-10 69.3 11.0 102 4-111 391-494 (505)
63 PRK11273 glpT sn-glycerol-3-ph 98.4 4.7E-06 1E-10 69.0 10.5 111 4-118 99-214 (452)
64 PF05977 MFS_3: Transmembrane 98.4 6.1E-06 1.3E-10 70.3 11.4 104 4-112 290-394 (524)
65 PRK09528 lacY galactoside perm 98.4 2.2E-06 4.7E-11 70.1 8.4 106 5-115 299-406 (420)
66 KOG1330|consensus 98.3 1.8E-07 3.9E-12 77.7 1.7 107 6-116 106-213 (493)
67 PRK11043 putative transporter; 98.3 6.8E-06 1.5E-10 66.6 10.8 101 6-111 79-180 (401)
68 PRK12307 putative sialic acid 98.3 4E-06 8.6E-11 68.3 9.4 91 4-99 89-180 (426)
69 PRK11902 ampG muropeptide tran 98.3 9.1E-06 2E-10 66.1 11.2 101 4-107 74-177 (402)
70 PRK10207 dipeptide/tripeptide 98.3 4.4E-06 9.5E-11 70.5 9.5 104 4-111 87-193 (489)
71 PRK15011 sugar efflux transpor 98.3 9.9E-06 2.2E-10 65.8 11.1 72 40-115 123-197 (393)
72 PRK09584 tppB putative tripept 98.3 6E-06 1.3E-10 69.7 9.9 104 4-111 94-200 (500)
73 PTZ00207 hypothetical protein; 98.3 1.2E-05 2.5E-10 69.5 11.7 108 4-116 97-209 (591)
74 PRK09952 shikimate transporter 98.3 1.2E-05 2.6E-10 66.5 11.4 81 29-111 350-432 (438)
75 PRK10054 putative transporter; 98.3 6.6E-06 1.4E-10 67.1 9.7 81 37-124 313-394 (395)
76 PRK03545 putative arabinose tr 98.3 1.1E-05 2.5E-10 65.2 11.1 69 41-113 313-381 (390)
77 PRK11010 ampG muropeptide tran 98.3 1.4E-05 3E-10 67.3 11.8 103 5-110 88-193 (491)
78 PRK03893 putative sialic acid 98.3 1.1E-05 2.4E-10 67.0 11.0 90 5-99 92-182 (496)
79 COG2271 UhpC Sugar phosphate p 98.3 3E-06 6.4E-11 69.9 7.4 107 4-115 327-437 (448)
80 TIGR00898 2A0119 cation transp 98.3 3.8E-06 8.2E-11 70.1 8.0 103 4-115 163-266 (505)
81 TIGR00903 2A0129 major facilit 98.3 1.8E-05 3.9E-10 64.4 11.5 70 43-116 99-169 (368)
82 TIGR00897 2A0118 polyol permea 98.3 1.6E-05 3.4E-10 64.8 11.3 65 43-111 336-400 (402)
83 TIGR00903 2A0129 major facilit 98.2 6.1E-06 1.3E-10 67.1 8.7 94 9-109 268-362 (368)
84 cd06174 MFS The Major Facilita 98.2 6.8E-06 1.5E-10 64.0 8.5 102 4-110 70-172 (352)
85 TIGR01299 synapt_SV2 synaptic 98.2 6E-06 1.3E-10 73.0 9.0 109 5-115 239-357 (742)
86 PRK11646 multidrug resistance 98.2 5.9E-06 1.3E-10 67.5 8.4 102 7-109 283-385 (400)
87 TIGR00879 SP MFS transporter, 98.2 6.6E-06 1.4E-10 66.8 8.6 69 41-113 402-471 (481)
88 PRK10489 enterobactin exporter 98.2 1.6E-05 3.4E-10 64.9 10.9 71 35-109 123-194 (417)
89 TIGR00879 SP MFS transporter, 98.2 6.9E-06 1.5E-10 66.7 8.6 84 26-114 131-218 (481)
90 TIGR00890 2A0111 Oxalate/Forma 98.2 6.9E-06 1.5E-10 64.8 7.9 66 36-105 309-375 (377)
91 TIGR00886 2A0108 nitrite extru 98.2 2.2E-05 4.9E-10 62.3 10.6 75 41-115 109-191 (366)
92 KOG2533|consensus 98.2 2.8E-06 6E-11 71.9 5.6 98 22-119 134-234 (495)
93 KOG3764|consensus 98.2 6E-06 1.3E-10 67.9 7.3 104 3-115 141-250 (464)
94 PLN00028 nitrate transmembrane 98.2 1.3E-05 2.8E-10 67.1 9.5 110 4-115 107-222 (476)
95 TIGR00896 CynX cyanate transpo 98.2 3.9E-05 8.4E-10 61.2 11.8 68 37-106 102-169 (355)
96 PRK09705 cynX putative cyanate 98.2 2.1E-05 4.6E-10 64.0 10.3 81 37-120 307-390 (393)
97 PRK10642 proline/glycine betai 98.2 1.1E-05 2.4E-10 67.6 8.7 100 3-103 92-204 (490)
98 PRK03699 putative transporter; 98.1 1.3E-05 2.8E-10 65.1 8.5 73 36-112 308-380 (394)
99 PRK11128 putative 3-phenylprop 98.1 1.5E-05 3.3E-10 64.4 8.9 66 36-106 108-173 (382)
100 PRK11273 glpT sn-glycerol-3-ph 98.1 3.1E-05 6.6E-10 64.2 10.2 67 45-115 370-438 (452)
101 PRK06814 acylglycerophosphoeth 98.1 2.6E-05 5.7E-10 71.4 10.7 84 21-108 107-191 (1140)
102 PRK10406 alpha-ketoglutarate t 98.1 3.8E-05 8.2E-10 63.2 10.1 69 36-104 138-211 (432)
103 PRK09556 uhpT sugar phosphate 98.1 5.4E-06 1.2E-10 68.9 5.0 96 21-117 121-217 (467)
104 KOG0255|consensus 98.1 2E-05 4.3E-10 66.4 8.3 97 3-107 153-250 (521)
105 PRK10077 xylE D-xylose transpo 98.1 1.9E-05 4.1E-10 65.3 7.9 73 41-113 383-458 (479)
106 TIGR00885 fucP L-fucose:H+ sym 98.0 0.00012 2.5E-09 60.4 12.3 88 22-109 94-204 (410)
107 PRK10077 xylE D-xylose transpo 98.0 1.1E-05 2.3E-10 66.7 6.1 79 36-115 134-217 (479)
108 PRK11195 lysophospholipid tran 98.0 5.2E-05 1.1E-09 61.8 9.8 70 33-107 99-169 (393)
109 TIGR01272 gluP glucose/galacto 98.0 6.6E-05 1.4E-09 59.7 9.9 91 22-112 10-113 (310)
110 TIGR00902 2A0127 phenyl propri 98.0 4.2E-05 9.2E-10 61.9 8.3 78 21-103 93-170 (382)
111 TIGR00897 2A0118 polyol permea 98.0 0.00017 3.6E-09 58.8 11.7 67 42-112 125-193 (402)
112 TIGR00805 oat sodium-independe 97.9 5.4E-05 1.2E-09 65.9 9.1 86 29-114 175-283 (633)
113 PRK09952 shikimate transporter 97.9 6.1E-05 1.3E-09 62.2 9.1 99 4-103 100-211 (438)
114 PRK10091 MFS transport protein 97.9 0.0001 2.3E-09 59.5 10.2 60 53-117 322-381 (382)
115 TIGR02332 HpaX 4-hydroxyphenyl 97.9 5.3E-05 1.1E-09 62.2 8.3 58 42-102 353-411 (412)
116 TIGR00887 2A0109 phosphate:H+ 97.9 8.5E-05 1.8E-09 62.4 9.1 73 41-114 411-490 (502)
117 COG2223 NarK Nitrate/nitrite t 97.9 6E-05 1.3E-09 62.1 7.9 108 6-116 292-405 (417)
118 PF11700 ATG22: Vacuole efflux 97.9 0.00014 3E-09 61.4 10.3 88 21-111 379-467 (477)
119 PRK03633 putative MFS family t 97.9 0.00019 4.2E-09 57.9 10.8 68 40-111 303-371 (381)
120 TIGR00883 2A0106 metabolite-pr 97.9 0.00014 3.1E-09 57.6 9.9 68 40-107 114-186 (394)
121 COG2814 AraJ Arabinose efflux 97.9 0.00022 4.7E-09 58.8 11.0 107 6-116 284-390 (394)
122 TIGR00792 gph sugar (Glycoside 97.9 0.00026 5.7E-09 57.7 11.4 76 40-115 117-197 (437)
123 PRK15075 citrate-proton sympor 97.9 0.00012 2.6E-09 60.3 9.4 60 40-99 135-199 (434)
124 KOG2504|consensus 97.9 5.4E-05 1.2E-09 64.3 7.4 106 3-113 116-222 (509)
125 TIGR00712 glpT glycerol-3-phos 97.9 5.5E-05 1.2E-09 62.4 7.2 68 45-116 368-437 (438)
126 TIGR01301 GPH_sucrose GPH fami 97.8 0.00033 7.1E-09 59.2 11.5 88 29-116 121-222 (477)
127 TIGR00806 rfc RFC reduced fola 97.8 0.00029 6.4E-09 59.5 11.0 106 4-116 98-207 (511)
128 PRK08633 2-acyl-glycerophospho 97.8 0.00028 6E-09 64.4 11.5 62 21-82 102-164 (1146)
129 PF06609 TRI12: Fungal trichot 97.8 0.00028 6E-09 61.1 10.6 101 6-112 116-217 (599)
130 TIGR00924 yjdL_sub1_fam amino 97.8 0.00034 7.5E-09 58.7 11.0 106 3-112 354-468 (475)
131 PRK12307 putative sialic acid 97.8 0.00015 3.3E-09 59.0 8.4 43 41-83 340-383 (426)
132 TIGR00902 2A0127 phenyl propri 97.8 0.00039 8.5E-09 56.2 10.6 99 4-108 276-375 (382)
133 PF13347 MFS_2: MFS/sugar tran 97.7 0.00037 8.1E-09 57.3 10.3 79 36-114 117-200 (428)
134 PRK03633 putative MFS family t 97.7 0.00098 2.1E-08 53.8 12.5 79 4-83 77-156 (381)
135 PRK10406 alpha-ketoglutarate t 97.7 0.00033 7.2E-09 57.6 10.0 76 32-111 346-423 (432)
136 PF05977 MFS_3: Transmembrane 97.7 0.00033 7.2E-09 59.8 9.9 84 22-109 103-187 (524)
137 COG2223 NarK Nitrate/nitrite t 97.7 0.00014 3.1E-09 59.9 7.4 95 25-124 107-205 (417)
138 TIGR00792 gph sugar (Glycoside 97.7 0.00058 1.3E-08 55.7 10.4 79 5-83 294-380 (437)
139 TIGR00891 2A0112 putative sial 97.6 0.00021 4.7E-09 57.1 7.2 55 40-97 346-401 (405)
140 TIGR00882 2A0105 oligosacchari 97.6 0.00039 8.4E-09 56.4 8.4 62 45-110 330-393 (396)
141 PRK06814 acylglycerophosphoeth 97.6 0.00044 9.6E-09 63.4 9.6 82 22-106 334-416 (1140)
142 PRK10504 putative transporter; 97.6 0.00077 1.7E-08 55.8 10.2 50 34-83 365-415 (471)
143 KOG2615|consensus 97.6 0.00012 2.7E-09 60.0 5.3 77 3-82 103-181 (451)
144 PRK08633 2-acyl-glycerophospho 97.6 0.00061 1.3E-08 62.3 10.2 100 4-107 305-405 (1146)
145 PRK11902 ampG muropeptide tran 97.6 0.0013 2.8E-08 53.5 11.2 70 35-108 316-386 (402)
146 PRK11043 putative transporter; 97.6 0.0015 3.2E-08 52.9 11.4 51 33-83 307-357 (401)
147 PRK10213 nepI ribonucleoside t 97.6 0.0012 2.6E-08 53.9 10.9 68 35-106 318-385 (394)
148 KOG0253|consensus 97.6 0.00016 3.4E-09 59.5 5.5 102 3-111 416-518 (528)
149 TIGR02718 sider_RhtX_FptX side 97.6 0.00086 1.9E-08 54.2 9.9 70 34-107 315-386 (390)
150 PRK15402 multidrug efflux syst 97.5 0.0022 4.8E-08 52.0 12.2 44 40-83 327-370 (406)
151 PF03825 Nuc_H_symport: Nucleo 97.5 0.001 2.3E-08 54.9 10.3 73 43-115 322-398 (400)
152 PRK12382 putative transporter; 97.5 0.0011 2.3E-08 53.6 10.2 56 41-100 131-187 (392)
153 TIGR01272 gluP glucose/galacto 97.5 0.00077 1.7E-08 53.6 9.1 67 27-98 235-301 (310)
154 PRK10133 L-fucose transporter; 97.5 0.0027 5.8E-08 52.7 12.5 61 21-81 116-177 (438)
155 PRK11128 putative 3-phenylprop 97.5 0.0015 3.3E-08 52.7 10.9 98 4-107 276-374 (382)
156 TIGR00900 2A0121 H+ Antiporter 97.5 0.00043 9.4E-09 54.4 7.4 78 6-83 285-363 (365)
157 PRK09669 putative symporter Ya 97.5 0.00096 2.1E-08 55.1 9.8 76 38-113 125-205 (444)
158 PRK05122 major facilitator sup 97.5 0.00074 1.6E-08 54.6 8.9 61 40-104 130-191 (399)
159 PRK09528 lacY galactoside perm 97.5 0.00021 4.5E-09 58.5 5.6 59 53-116 137-195 (420)
160 PRK11652 emrD multidrug resist 97.5 0.0026 5.7E-08 51.3 11.8 57 26-82 303-359 (394)
161 PRK11195 lysophospholipid tran 97.5 0.0012 2.5E-08 53.9 9.7 87 21-112 292-380 (393)
162 PRK15034 nitrate/nitrite trans 97.5 0.00085 1.8E-08 56.5 8.8 77 33-112 356-454 (462)
163 TIGR00882 2A0105 oligosacchari 97.4 0.00052 1.1E-08 55.6 7.2 53 55-112 131-183 (396)
164 TIGR00895 2A0115 benzoate tran 97.4 0.00081 1.7E-08 53.4 8.1 61 21-81 337-398 (398)
165 PRK15034 nitrate/nitrite trans 97.4 0.0022 4.8E-08 54.0 10.7 78 37-114 142-234 (462)
166 PRK11462 putative transporter; 97.4 0.0021 4.6E-08 53.7 10.4 79 33-111 120-203 (460)
167 TIGR00883 2A0106 metabolite-pr 97.4 0.00045 9.7E-09 54.8 6.1 78 23-103 313-392 (394)
168 KOG0252|consensus 97.3 0.00029 6.3E-09 59.1 4.6 112 4-115 384-501 (538)
169 TIGR02718 sider_RhtX_FptX side 97.3 0.002 4.3E-08 52.1 9.4 64 46-113 121-185 (390)
170 TIGR00881 2A0104 phosphoglycer 97.3 0.00055 1.2E-08 53.9 5.5 50 41-94 329-379 (379)
171 PF00854 PTR2: POT family; In 97.3 0.0032 6.9E-08 51.0 9.8 83 26-112 37-123 (372)
172 PRK09848 glucuronide transport 97.2 0.0019 4.2E-08 53.3 8.1 51 32-82 329-387 (448)
173 PRK15075 citrate-proton sympor 97.2 0.0026 5.6E-08 52.4 8.5 49 35-83 344-394 (434)
174 PRK10429 melibiose:sodium symp 97.1 0.0018 4E-08 54.1 7.5 49 34-82 336-392 (473)
175 TIGR00788 fbt folate/biopterin 97.1 0.0026 5.6E-08 53.4 8.1 50 34-83 363-413 (468)
176 KOG3762|consensus 97.1 0.0064 1.4E-07 52.1 10.2 104 3-111 441-546 (618)
177 COG2807 CynX Cyanate permease 97.1 0.0034 7.3E-08 51.4 8.2 74 36-112 310-385 (395)
178 COG3104 PTR2 Dipeptide/tripept 97.1 0.00054 1.2E-08 57.8 3.7 110 4-117 98-211 (498)
179 COG0738 FucP Fucose permease [ 97.0 0.012 2.6E-07 48.8 10.9 82 36-117 118-215 (422)
180 PRK10429 melibiose:sodium symp 97.0 0.017 3.8E-07 48.2 12.0 79 36-114 120-203 (473)
181 PF03209 PUCC: PUCC protein; 97.0 0.013 2.9E-07 48.4 11.0 44 40-83 107-151 (403)
182 PF06609 TRI12: Fungal trichot 97.0 0.0077 1.7E-07 52.3 9.9 96 21-116 404-558 (599)
183 KOG0254|consensus 97.0 0.0087 1.9E-07 50.6 10.0 101 12-117 133-234 (513)
184 PRK11102 bicyclomycin/multidru 96.9 0.023 5.1E-07 45.3 11.9 67 40-112 305-372 (377)
185 PRK10207 dipeptide/tripeptide 96.9 0.012 2.5E-07 49.8 10.5 83 30-112 387-476 (489)
186 PRK09584 tppB putative tripept 96.9 0.0077 1.7E-07 51.0 9.4 108 3-110 355-477 (500)
187 PF01306 LacY_symp: LacY proto 96.9 0.016 3.5E-07 48.2 10.5 99 12-115 303-403 (412)
188 PRK10133 L-fucose transporter; 96.8 0.011 2.4E-07 49.1 9.3 74 25-103 350-424 (438)
189 TIGR00710 efflux_Bcr_CflA drug 96.8 0.024 5.1E-07 45.1 10.9 47 36-82 314-360 (385)
190 KOG0569|consensus 96.8 0.0044 9.6E-08 52.5 6.7 85 29-117 123-209 (485)
191 PF03092 BT1: BT1 family; Int 96.7 0.015 3.2E-07 48.5 9.5 84 27-114 91-177 (433)
192 COG2270 Permeases of the major 96.7 0.0052 1.1E-07 51.1 6.3 72 36-110 355-427 (438)
193 COG2211 MelB Na+/melibiose sym 96.6 0.05 1.1E-06 46.0 11.9 93 24-116 114-211 (467)
194 PF11700 ATG22: Vacuole efflux 96.6 0.054 1.2E-06 45.8 12.1 108 11-118 114-253 (477)
195 PF00083 Sugar_tr: Sugar (and 96.6 6E-05 1.3E-09 61.9 -5.8 86 30-117 110-196 (451)
196 PRK14995 methyl viologen resis 96.5 0.027 6E-07 47.3 10.0 55 28-82 357-412 (495)
197 TIGR00788 fbt folate/biopterin 96.5 0.0086 1.9E-07 50.3 6.4 67 41-111 139-208 (468)
198 TIGR01301 GPH_sucrose GPH fami 96.4 0.022 4.7E-07 48.3 8.7 90 25-116 383-475 (477)
199 TIGR00896 CynX cyanate transpo 96.4 0.0089 1.9E-07 47.5 6.1 50 34-83 297-348 (355)
200 TIGR00885 fucP L-fucose:H+ sym 96.4 0.023 4.9E-07 46.8 8.5 94 5-102 306-402 (410)
201 KOG0255|consensus 96.4 0.041 8.8E-07 46.4 10.0 80 3-82 385-467 (521)
202 KOG2816|consensus 96.4 0.024 5.1E-07 47.9 8.5 81 37-121 127-208 (463)
203 PF03209 PUCC: PUCC protein; 96.4 0.058 1.3E-06 44.7 10.5 96 21-116 300-402 (403)
204 KOG1330|consensus 96.2 0.0088 1.9E-07 50.3 5.0 80 4-83 330-412 (493)
205 TIGR00926 2A1704 Peptide:H+ sy 96.2 0.051 1.1E-06 47.8 10.0 88 26-113 89-183 (654)
206 PF07690 MFS_1: Major Facilita 96.1 0.0097 2.1E-07 46.5 4.7 46 29-74 306-352 (352)
207 PRK09669 putative symporter Ya 96.1 0.081 1.7E-06 43.7 10.2 63 21-83 318-388 (444)
208 PRK10473 multidrug efflux syst 96.0 0.17 3.7E-06 40.7 11.8 25 54-82 324-348 (392)
209 COG2807 CynX Cyanate permease 96.0 0.15 3.3E-06 41.9 11.1 73 36-111 113-185 (395)
210 COG2211 MelB Na+/melibiose sym 96.0 0.043 9.2E-07 46.4 8.1 79 5-83 309-396 (467)
211 PTZ00207 hypothetical protein; 96.0 0.012 2.5E-07 51.2 4.8 96 25-120 455-560 (591)
212 TIGR00769 AAA ADP/ATP carrier 95.9 0.095 2.1E-06 44.4 10.0 52 31-82 137-190 (472)
213 KOG2325|consensus 95.9 0.095 2.1E-06 44.5 9.9 91 29-119 133-236 (488)
214 PF13347 MFS_2: MFS/sugar tran 95.9 0.056 1.2E-06 44.4 8.4 80 4-83 296-384 (428)
215 PRK15403 multidrug efflux syst 95.9 0.11 2.4E-06 42.6 10.1 46 54-104 344-389 (413)
216 KOG2615|consensus 95.8 0.042 9E-07 45.5 7.2 45 38-82 368-413 (451)
217 PF06813 Nodulin-like: Nodulin 95.8 0.056 1.2E-06 42.0 7.6 65 46-115 120-184 (250)
218 TIGR00711 efflux_EmrB drug res 95.6 0.063 1.4E-06 44.3 7.8 52 32-83 358-410 (485)
219 COG0738 FucP Fucose permease [ 95.5 0.036 7.8E-07 46.0 5.6 94 10-110 314-407 (422)
220 PF01770 Folate_carrier: Reduc 95.1 0.96 2.1E-05 37.8 13.0 78 42-121 113-191 (412)
221 TIGR00889 2A0110 nucleoside tr 94.9 0.11 2.4E-06 42.8 6.9 37 66-107 139-175 (418)
222 KOG3626|consensus 94.8 0.13 2.9E-06 45.7 7.5 92 25-116 236-347 (735)
223 PF03219 TLC: TLC ATP/ADP tran 94.7 0.26 5.7E-06 42.0 8.8 41 42-82 164-205 (491)
224 PRK11462 putative transporter; 94.6 0.13 2.8E-06 43.1 6.9 48 36-83 332-387 (460)
225 KOG1479|consensus 94.0 0.18 3.9E-06 41.9 6.3 86 29-117 124-209 (406)
226 KOG3764|consensus 93.7 0.31 6.7E-06 40.7 7.0 56 54-113 400-455 (464)
227 PF03137 OATP: Organic Anion T 93.4 0.018 3.9E-07 49.5 -0.5 94 25-118 140-256 (539)
228 PF00083 Sugar_tr: Sugar (and 93.4 0.0031 6.8E-08 51.7 -5.1 73 41-117 368-441 (451)
229 PRK15462 dipeptide/tripeptide 93.3 2.1 4.5E-05 36.6 11.6 102 3-104 350-469 (493)
230 TIGR00886 2A0108 nitrite extru 92.7 0.16 3.5E-06 40.1 4.0 45 26-70 322-366 (366)
231 PRK03612 spermidine synthase; 92.4 1 2.2E-05 38.7 8.7 50 33-82 121-170 (521)
232 TIGR00806 rfc RFC reduced fola 92.4 0.53 1.2E-05 40.2 6.8 99 4-106 336-442 (511)
233 PF01306 LacY_symp: LacY proto 92.2 0.23 5E-06 41.4 4.5 55 53-112 134-188 (412)
234 PF03825 Nuc_H_symport: Nucleo 91.9 1.1 2.4E-05 37.1 8.0 99 4-105 74-173 (400)
235 TIGR00939 2a57 Equilibrative N 91.8 0.74 1.6E-05 38.6 7.0 79 34-112 118-196 (437)
236 KOG3626|consensus 91.8 0.64 1.4E-05 41.5 6.8 38 46-83 611-649 (735)
237 KOG4112|consensus 91.4 0.94 2E-05 29.9 5.7 69 61-137 27-99 (101)
238 KOG0569|consensus 91.1 0.65 1.4E-05 39.6 6.0 72 41-117 387-459 (485)
239 PF02487 CLN3: CLN3 protein; 91.0 1.3 2.8E-05 36.9 7.6 98 6-111 97-194 (402)
240 COG0477 ProP Permeases of the 90.4 4.9 0.00011 29.4 9.8 67 36-104 108-177 (338)
241 PF03092 BT1: BT1 family; Int 90.4 1.8 3.9E-05 36.1 8.0 74 42-115 338-416 (433)
242 PRK09848 glucuronide transport 90.3 4.8 0.0001 33.1 10.4 46 35-80 122-174 (448)
243 TIGR00901 2A0125 AmpG-related 90.2 0.93 2E-05 35.9 6.0 40 28-67 315-355 (356)
244 KOG2816|consensus 89.4 1.9 4.1E-05 36.5 7.4 79 3-83 313-392 (463)
245 PF06645 SPC12: Microsomal sig 89.2 1 2.2E-05 28.6 4.4 49 71-125 21-72 (76)
246 KOG2533|consensus 88.3 2.4 5.2E-05 36.2 7.4 57 41-101 386-445 (495)
247 COG5336 Uncharacterized protei 88.2 3.2 6.9E-05 28.2 6.4 33 52-84 37-69 (116)
248 KOG0254|consensus 87.7 5.2 0.00011 33.8 9.1 72 41-116 414-487 (513)
249 PF06963 FPN1: Ferroportin1 (F 86.1 17 0.00036 30.6 11.1 56 52-111 144-199 (432)
250 KOG0252|consensus 84.7 0.47 1E-05 40.4 1.3 65 5-69 121-192 (538)
251 COG3202 ATP/ADP translocase [E 82.7 12 0.00026 32.1 8.8 42 42-83 168-210 (509)
252 PF01733 Nucleoside_tran: Nucl 81.6 0.45 9.8E-06 37.8 0.0 76 35-113 10-85 (309)
253 PF12832 MFS_1_like: MFS_1 lik 79.1 12 0.00026 23.5 6.0 29 55-83 33-61 (77)
254 PF07857 DUF1632: CEO family ( 78.0 19 0.00042 28.1 8.0 20 59-78 81-100 (254)
255 COG2270 Permeases of the major 76.4 5.4 0.00012 33.6 4.7 111 6-116 97-224 (438)
256 KOG0253|consensus 75.2 9.6 0.00021 32.2 5.8 61 42-107 185-246 (528)
257 KOG2563|consensus 74.3 17 0.00036 31.1 7.1 53 50-105 293-346 (480)
258 KOG2563|consensus 74.2 20 0.00042 30.6 7.5 65 51-115 170-238 (480)
259 KOG3810|consensus 72.4 9.2 0.0002 31.8 5.0 108 3-114 308-423 (433)
260 KOG2325|consensus 72.0 1.4 3E-05 37.6 0.3 68 44-115 410-478 (488)
261 PF15061 DUF4538: Domain of un 71.4 2.9 6.3E-05 25.1 1.5 28 88-115 3-30 (58)
262 TIGR00805 oat sodium-independe 70.8 19 0.00042 31.6 7.1 38 46-83 543-581 (633)
263 PF12606 RELT: Tumour necrosis 70.0 13 0.00028 21.6 4.0 29 93-121 3-31 (50)
264 PF05978 UNC-93: Ion channel r 69.8 30 0.00066 24.8 6.8 23 55-77 123-145 (156)
265 PRK14774 lipoprotein signal pe 69.5 33 0.00072 25.5 7.2 48 64-111 99-149 (185)
266 PF07672 MFS_Mycoplasma: Mycop 69.1 3.7 7.9E-05 32.3 2.0 28 87-114 37-64 (267)
267 PF08374 Protocadherin: Protoc 64.1 13 0.00029 28.3 4.1 16 116-131 79-94 (221)
268 PRK11715 inner membrane protei 63.6 39 0.00084 28.6 7.2 53 53-112 353-405 (436)
269 PRK06638 NADH:ubiquinone oxido 63.2 12 0.00026 28.0 3.7 28 89-116 142-169 (198)
270 PF06123 CreD: Inner membrane 61.9 54 0.0012 27.7 7.7 62 43-112 338-399 (430)
271 PF04277 OAD_gamma: Oxaloaceta 61.0 25 0.00054 21.9 4.5 22 89-110 11-32 (79)
272 COG3104 PTR2 Dipeptide/tripept 60.9 75 0.0016 27.4 8.4 71 41-111 413-486 (498)
273 PRK04125 murein hydrolase regu 60.7 8.8 0.00019 27.3 2.5 20 63-82 64-83 (141)
274 KOG0637|consensus 60.5 30 0.00064 29.7 5.9 58 24-81 140-203 (498)
275 PF06783 UPF0239: Uncharacteri 60.4 18 0.00039 23.4 3.7 23 90-112 22-44 (85)
276 PRK11246 hypothetical protein; 58.1 28 0.0006 26.6 4.9 34 91-124 163-196 (218)
277 PRK14778 lipoprotein signal pe 57.9 11 0.00024 28.1 2.7 20 64-83 87-106 (186)
278 PF14851 FAM176: FAM176 family 56.5 30 0.00066 24.9 4.7 8 93-100 24-31 (153)
279 PRK03427 cell division protein 55.8 23 0.0005 28.8 4.4 29 89-117 4-32 (333)
280 PHA03049 IMV membrane protein; 55.8 30 0.00065 21.3 3.9 30 94-123 6-35 (68)
281 PTZ00370 STEVOR; Provisional 55.5 30 0.00065 27.6 4.9 33 89-121 256-288 (296)
282 PF03547 Mem_trans: Membrane t 55.5 31 0.00067 27.9 5.3 16 65-80 103-118 (385)
283 PF05961 Chordopox_A13L: Chord 55.2 31 0.00067 21.3 3.9 30 94-123 6-35 (68)
284 PF11947 DUF3464: Protein of u 55.1 43 0.00094 24.2 5.3 49 24-73 97-146 (153)
285 KOG1623|consensus 52.8 68 0.0015 25.0 6.4 27 50-76 119-145 (243)
286 PF14851 FAM176: FAM176 family 52.8 40 0.00087 24.3 4.8 16 97-112 32-47 (153)
287 PF08507 COPI_assoc: COPI asso 52.0 56 0.0012 22.7 5.5 16 67-82 67-82 (136)
288 PF10183 ESSS: ESSS subunit of 50.8 8.7 0.00019 25.8 1.1 36 88-123 57-93 (105)
289 PF02487 CLN3: CLN3 protein; 49.9 91 0.002 26.1 7.2 55 26-80 338-394 (402)
290 TIGR00910 2A0307_GadC glutamat 48.8 79 0.0017 27.0 6.9 10 141-150 489-498 (507)
291 PF03348 Serinc: Serine incorp 48.3 1.7E+02 0.0036 24.7 10.9 73 43-116 233-308 (429)
292 KOG3098|consensus 48.2 89 0.0019 26.7 7.0 35 40-74 371-405 (461)
293 KOG3098|consensus 46.9 1.4E+02 0.0031 25.5 8.0 38 45-82 125-163 (461)
294 PRK10297 PTS system N,N'-diace 46.7 10 0.00022 32.1 1.1 29 88-117 404-433 (452)
295 PF05255 UPF0220: Uncharacteri 46.5 94 0.002 22.7 6.1 61 59-119 105-165 (166)
296 PF13334 DUF4094: Domain of un 45.0 49 0.0011 21.8 4.0 19 90-108 2-20 (95)
297 PF01528 Herpes_glycop: Herpes 44.6 1.5E+02 0.0033 24.6 7.6 23 40-62 252-279 (374)
298 PF15050 SCIMP: SCIMP protein 44.2 46 0.001 23.1 3.8 14 118-131 42-55 (133)
299 TIGR00939 2a57 Equilibrative N 44.1 56 0.0012 27.4 5.2 89 33-121 113-202 (437)
300 PF13000 Acatn: Acetyl-coenzym 43.7 1.1E+02 0.0023 26.8 6.7 31 94-124 203-233 (544)
301 PF06422 PDR_CDR: CDR ABC tran 43.5 35 0.00077 22.6 3.2 20 87-106 46-65 (103)
302 PF01914 MarC: MarC family int 43.1 1.4E+02 0.003 22.3 6.7 25 92-116 70-94 (203)
303 PF01102 Glycophorin_A: Glycop 42.1 27 0.00058 24.2 2.5 9 93-101 70-78 (122)
304 PF06813 Nodulin-like: Nodulin 42.1 1.5E+02 0.0032 23.0 6.9 49 59-112 39-87 (250)
305 TIGR00880 2_A_01_02 Multidrug 39.4 19 0.00041 23.3 1.4 11 43-53 17-27 (141)
306 PF03137 OATP: Organic Anion T 39.4 9.9 0.00021 32.8 0.0 41 43-83 473-514 (539)
307 PF13955 Fst_toxin: Toxin Fst, 39.0 22 0.00048 16.8 1.2 13 70-82 3-15 (21)
308 PF13120 DUF3974: Domain of un 38.9 26 0.00057 23.3 2.0 35 92-126 6-43 (126)
309 TIGR00769 AAA ADP/ATP carrier 38.4 2.5E+02 0.0055 24.0 9.1 56 45-104 289-346 (472)
310 PF05631 DUF791: Protein of un 37.9 2.3E+02 0.005 23.4 10.0 63 53-117 158-221 (354)
311 TIGR01478 STEVOR variant surfa 37.7 1.9E+02 0.0041 23.2 6.8 33 89-121 260-292 (295)
312 COG4736 CcoQ Cbb3-type cytochr 37.4 50 0.0011 19.9 2.8 19 102-120 21-39 (60)
313 PF09911 DUF2140: Uncharacteri 37.3 38 0.00083 25.1 2.9 18 90-107 3-20 (187)
314 PHA03231 glycoprotein BALF4; P 35.9 39 0.00084 31.0 3.1 22 60-81 677-698 (829)
315 PF07172 GRP: Glycine rich pro 35.8 49 0.0011 21.8 2.9 9 92-100 4-12 (95)
316 PRK12489 anaerobic C4-dicarbox 34.5 1.2E+02 0.0025 25.9 5.6 25 88-112 168-192 (443)
317 PF12805 FUSC-like: FUSC-like 34.0 2.3E+02 0.0049 22.1 9.3 18 99-116 83-100 (284)
318 PF07423 DUF1510: Protein of u 33.6 66 0.0014 24.6 3.7 13 99-111 24-36 (217)
319 PF07010 Endomucin: Endomucin; 33.4 1.1E+02 0.0023 23.7 4.7 15 107-121 210-224 (259)
320 PF03219 TLC: TLC ATP/ADP tran 33.1 3.2E+02 0.0069 23.5 9.1 58 45-106 305-364 (491)
321 PF08611 DUF1774: Fungal prote 32.9 1.5E+02 0.0032 19.7 6.6 55 55-119 27-81 (97)
322 KOG1278|consensus 32.2 1.8E+02 0.0038 25.7 6.3 35 47-81 353-387 (628)
323 COG3115 ZipA Cell division pro 31.4 82 0.0018 25.4 3.9 24 89-112 3-26 (324)
324 KOG3880|consensus 31.4 39 0.00085 27.8 2.2 44 67-112 156-199 (409)
325 COG2056 Predicted permease [Ge 31.2 80 0.0017 26.4 3.9 35 90-124 190-224 (444)
326 MTH00057 ND6 NADH dehydrogenas 30.5 1.4E+02 0.0029 22.1 4.8 28 89-116 141-168 (186)
327 PF11446 DUF2897: Protein of u 30.5 1.2E+02 0.0026 17.9 4.0 23 90-112 4-26 (55)
328 PRK09546 zntB zinc transporter 30.4 1.7E+02 0.0036 23.3 5.7 26 88-113 294-320 (324)
329 PF13829 DUF4191: Domain of un 30.2 36 0.00078 26.1 1.8 22 92-113 53-74 (224)
330 PF07214 DUF1418: Protein of u 29.8 94 0.002 20.6 3.4 17 91-107 45-61 (96)
331 COG5249 RER1 Golgi protein inv 29.3 2.2E+02 0.0048 20.5 6.1 15 88-102 55-69 (180)
332 PRK03814 oxaloacetate decarbox 28.8 1.6E+02 0.0036 18.9 4.5 24 88-111 17-40 (85)
333 KOG1237|consensus 28.4 81 0.0018 27.6 3.8 54 55-112 192-245 (571)
334 KOG4332|consensus 28.1 3.4E+02 0.0073 22.3 8.7 84 24-111 346-430 (454)
335 COG4975 GlcU Putative glucose 27.8 1.1E+02 0.0025 24.1 4.1 58 71-137 97-154 (288)
336 PF13038 DUF3899: Domain of un 26.7 46 0.001 21.3 1.6 19 92-110 4-22 (92)
337 KOG1289|consensus 26.7 95 0.0021 27.1 3.8 62 88-154 486-548 (550)
338 PF10144 SMP_2: Bacterial viru 26.4 1.2E+02 0.0026 23.0 4.0 28 94-121 166-193 (210)
339 COG4425 Predicted membrane pro 25.1 4.6E+02 0.0099 22.8 7.4 68 44-111 63-133 (588)
340 TIGR02230 ATPase_gene1 F0F1-AT 25.0 2.2E+02 0.0047 19.0 6.2 12 89-100 75-86 (100)
341 PF07332 DUF1469: Protein of u 24.8 1.2E+02 0.0027 20.2 3.6 25 92-116 73-97 (121)
342 COG1455 CelB Phosphotransferas 24.7 59 0.0013 27.5 2.2 29 88-117 389-418 (432)
343 PRK12482 flagellar motor prote 24.6 1.9E+02 0.0041 23.1 5.0 42 42-83 163-209 (287)
344 TIGR03727 urea_t_UrtC_arc urea 24.6 80 0.0017 25.9 3.0 19 64-82 281-299 (364)
345 PRK10263 DNA translocase FtsK; 24.5 3.9E+02 0.0085 26.3 7.6 14 69-82 143-156 (1355)
346 COG3117 Uncharacterized protei 23.7 1.6E+02 0.0034 22.0 4.1 44 88-132 2-45 (188)
347 PF06027 DUF914: Eukaryotic pr 22.6 1.1E+02 0.0025 24.8 3.4 18 90-107 285-302 (334)
348 PRK13214 photosystem I reactio 21.6 92 0.002 20.2 2.2 36 88-126 14-50 (86)
349 PF07672 MFS_Mycoplasma: Mycop 21.5 4.2E+02 0.009 21.0 7.5 33 40-72 222-257 (267)
350 PRK09110 flagellar motor prote 21.3 2.4E+02 0.0052 22.4 4.9 41 42-82 163-208 (283)
351 PRK11111 hypothetical protein; 21.2 3.7E+02 0.008 20.3 7.0 21 92-112 76-96 (214)
352 PF06963 FPN1: Ferroportin1 (F 21.2 3.3E+02 0.0072 22.9 6.0 37 42-78 376-413 (432)
353 PF13105 DUF3959: Protein of u 20.8 1.5E+02 0.0032 22.3 3.4 23 88-110 128-150 (239)
354 PRK14780 lipoprotein signal pe 20.4 1.8E+02 0.0038 23.0 3.9 14 93-106 205-218 (263)
355 PRK14206 camphor resistance pr 20.0 2.2E+02 0.0049 19.5 4.1 21 55-75 68-88 (127)
No 1
>KOG2532|consensus
Probab=99.66 E-value=1.4e-16 Score=132.96 Aligned_cols=124 Identities=35% Similarity=0.688 Sum_probs=113.9
Q ss_pred CcccchhHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhh
Q psy3469 1 MILGQYGPAVCLVAASYTGC-DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGY 79 (154)
Q Consensus 1 ~~ig~~~~ai~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~ 79 (154)
|++++.+.+++++.+++.++ +.+.++++++++.++.|+..++++.+.+|.+|++.+.+.|+.+++++++++++|.++|.
T Consensus 336 n~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~ 415 (466)
T KOG2532|consen 336 NTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGI 415 (466)
T ss_pred HhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 57889999999999999986 34578999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCC
Q psy3469 80 VIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNND 125 (154)
Q Consensus 80 i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~~~ 125 (154)
++. +++..+|+.+|++.+++.+++.++|.++++.++|+|++++++
T Consensus 416 ~~~-~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w~~~~~~ 460 (466)
T KOG2532|consen 416 IVT-DNTREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPWTKSEEK 460 (466)
T ss_pred EeC-CCCHHHHHHHHHHHHHHHHHhchheeEeecCcccCccCCccc
Confidence 996 335688999999999999999999999999999999997664
No 2
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.38 E-value=4.5e-13 Score=109.49 Aligned_cols=127 Identities=16% Similarity=0.224 Sum_probs=109.5
Q ss_pred cccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhh--h
Q psy3469 2 ILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIA--G 78 (154)
Q Consensus 2 ~ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~--G 78 (154)
.+|++.++++.+++.+.+ +.+...++..+-..++|+..|+...+++...| ++||+..|++|+++++|+.+.|+++ |
T Consensus 98 ~~gLilsai~nil~Gfs~-s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la 176 (448)
T COG2271 98 AFGLILSAIVNILFGFSP-SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA 176 (448)
T ss_pred hHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHH
Confidence 568899999999999876 66666667777777888888888888889766 7799999999999999999999999 8
Q ss_pred hcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCC-CCchhhh
Q psy3469 79 YVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNNDA-PTPRAAT 133 (154)
Q Consensus 79 ~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~~~~-~~~~~~~ 133 (154)
++..+ .+|+..|++.+++.++-.++.++..+++||+..-|+.|| +.+..+.
T Consensus 177 ~~~~~----~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~ 228 (448)
T COG2271 177 FFAFH----GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEI 228 (448)
T ss_pred HHHhc----cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhh
Confidence 88874 689999999999999999999999999999999998876 4455444
No 3
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.30 E-value=2.4e-11 Score=100.50 Aligned_cols=105 Identities=30% Similarity=0.609 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV 100 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~ 100 (154)
+.+..+.++.+..++.+...+..+....|..|+++|.+.|+.++.+.++++++|.+.|++.+.+ ..++|+.+|.+.+++
T Consensus 360 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~-~~~~~~~~f~~~~~~ 438 (465)
T TIGR00894 360 AFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQD-SKNVWLIVFLIMAFV 438 (465)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCC-CchHHHHHHHHHHHH
Confidence 3444455555555555555566777778899999999999999999999999999999998742 125699999999999
Q ss_pred HHHHHHHHHHhccCCccCCCCCCCCC
Q psy3469 101 YLFSSTFYIFAASGDRQPWDNPNNDA 126 (154)
Q Consensus 101 ~~i~~~~~~~~~~~~~q~w~~~~~~~ 126 (154)
.+++.+++.++.+.++|+|+++++||
T Consensus 439 ~~i~~i~~~~~~~~~~~~w~~~~~~~ 464 (465)
T TIGR00894 439 NILCVIFYLIFGSAERQDWAKEEKDT 464 (465)
T ss_pred HHHHHHHeeeeecceecCCCCCcccC
Confidence 99999999999999999999876653
No 4
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.96 E-value=7.7e-09 Score=81.76 Aligned_cols=107 Identities=11% Similarity=0.124 Sum_probs=77.8
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.++.+++..+..+.+ +.+..++...+...+.+...+.....+.|..| ++|+.+.|+.+....+|..++|.+.+++.+
T Consensus 65 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 143 (399)
T TIGR00893 65 FIVIWGVFTGLQAFAG-AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI 143 (399)
T ss_pred HHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3444455555555554 55544444444444455556677788999887 679999999999999999999999999887
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
. .+|++.|++.+.+.++..+...++.+++
T Consensus 144 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (399)
T TIGR00893 144 H----FSWQWAFIIEGVLGIIWGVLWLKFIPDP 172 (399)
T ss_pred h----CCchHHHHHHHHHHHHHHHHhhheecCC
Confidence 4 6799999998888777766665555443
No 5
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.93 E-value=1.5e-08 Score=83.53 Aligned_cols=108 Identities=13% Similarity=0.183 Sum_probs=75.5
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+++..+++.++.++.+ +.+..+....+...+.+...+...+.+.|..| ++||++.|+.+....+|..++|.+.|++.+
T Consensus 94 ~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 94 GLIATGIINILFGFSS-SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566665554 44433333333333445555666778888877 679999999999999999999999999987
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
. .+|++.|++.+++.++..+...++.++++
T Consensus 173 ~----~gw~~~f~~~~i~~~~~~~~~~~~~~~~p 202 (434)
T PRK11663 173 H----YGWRYGMMIAGIIAIVVGLFLCWRLRDKP 202 (434)
T ss_pred c----ccHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 4 78999999988776666554444445444
No 6
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.90 E-value=1.2e-09 Score=90.81 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=56.9
Q ss_pred HHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469 35 FNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST 106 (154)
Q Consensus 35 ~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~ 106 (154)
..+...+..++.++|..| +++|++.|+++...++|++++|.+.|.+.+. ..+|+..|++.+++.+++.+
T Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~---~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 346 SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA---TKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh---cCCcchHHHHhhHHHHHHHH
Confidence 344545667778888766 6799999999999999999999999999984 34699999999888777665
No 7
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.82 E-value=5.1e-08 Score=76.53 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=76.8
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.++.+++.++..+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.+++.+
T Consensus 68 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 146 (352)
T PF07690_consen 68 GLLLFALGSLLLAFAS-NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS 146 (352)
T ss_dssp HHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhhhhHHHHhhhhh-hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh
Confidence 3444455533333433 55544444444455556667788889999887 589999999999999999999999999997
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
. .+|++.|++.+.+.++..++..++.
T Consensus 147 ~----~~~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 147 Y----FGWRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp H----CHHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred c----cccccccccccchhhhhhhhHhhhh
Confidence 3 7799999999999999887544444
No 8
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.80 E-value=1.3e-07 Score=64.40 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=72.9
Q ss_pred hHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc
Q psy3469 7 GPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP 85 (154)
Q Consensus 7 ~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~ 85 (154)
..+++.+...+.+ +.+.......+.....+...+..+....|..| ++|+.+.|+.+....++..++|.+.|++.+.
T Consensus 37 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-- 113 (141)
T TIGR00880 37 IFVLSTAMFALSS-NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF-- 113 (141)
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc--
Confidence 3344444444443 54444444444444455556677788889877 6799999999999999999999999999874
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 86 TQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 86 ~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.+|++.|++.+.+.+++.+...++.
T Consensus 114 --~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 114 --LGWRAPFLFLAILALAAFILLAFLL 138 (141)
T ss_pred --cchHHHHHHHHHHHHHHHHHHhhcC
Confidence 6799999998888877776665554
No 9
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.79 E-value=1.1e-08 Score=80.78 Aligned_cols=111 Identities=16% Similarity=0.223 Sum_probs=77.8
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhh-hhhhcc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPI-IAGYVI 81 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~-i~G~i~ 81 (154)
+.++.+++.++..+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|. +.+.+.
T Consensus 66 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 144 (379)
T TIGR00881 66 GLILCAIVNLFFGFST-SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA 144 (379)
T ss_pred HHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH
Confidence 4445555556666554 55444444444444455556677788899877 67999999999999999999995 555555
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccCC
Q psy3469 82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPW 119 (154)
Q Consensus 82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w 119 (154)
+ ..+|+..|++.+.+.++..+...++.++++++.
T Consensus 145 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (379)
T TIGR00881 145 E----LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC 178 (379)
T ss_pred h----cCCchhHHHHHHHHHHHHHHHHheeeCCCcccc
Confidence 5 268999999988888777666666666555443
No 10
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.73 E-value=6e-08 Score=81.12 Aligned_cols=91 Identities=11% Similarity=-0.012 Sum_probs=64.5
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV 100 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~ 100 (154)
+....+..+.+..++.+...+..++...++.|+++|++.|+.+..+++|++++|.+.+ .+ .+.+|+..|++.+++
T Consensus 347 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~---~~~~y~~~f~~~~~~ 421 (476)
T PLN00028 347 SLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF--TG---SSYSTETGISLMGVM 421 (476)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH--hc---CCccHhhHHHHHHHH
Confidence 3333333333333334444566777888888999999999999988888888888765 11 136799999999999
Q ss_pred HHHHHHHHHHhccCCc
Q psy3469 101 YLFSSTFYIFAASGDR 116 (154)
Q Consensus 101 ~~i~~~~~~~~~~~~~ 116 (154)
.+++.++.++....++
T Consensus 422 ~~i~~~~~~~~~~~~~ 437 (476)
T PLN00028 422 IIACTLPVAFIHFPQW 437 (476)
T ss_pred HHHHHHHHHheeccch
Confidence 9999888777654443
No 11
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.72 E-value=1.9e-07 Score=74.69 Aligned_cols=106 Identities=21% Similarity=0.245 Sum_probs=75.2
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.++.+++.+.+.+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.+.+.+
T Consensus 62 ~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 140 (377)
T PRK11102 62 GTLVFALAAVACALAQ-TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV 140 (377)
T ss_pred HHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554 54443333333333444445566778889877 679999999999999999999999999988
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASG 114 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~ 114 (154)
. .+|++.|++.+.+.++..+...++.++
T Consensus 141 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (377)
T PRK11102 141 W----FSWHAIFWVLALAAILAAALVFFFIPE 168 (377)
T ss_pred H----cChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4 689999999888887776666555544
No 12
>TIGR00895 2A0115 benzoate transport.
Probab=98.71 E-value=2.9e-08 Score=79.12 Aligned_cols=107 Identities=13% Similarity=0.170 Sum_probs=74.7
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.++.+++.+++.+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.|++.+
T Consensus 88 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (398)
T TIGR00895 88 SILLFSVFTLLCALAT-NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP 166 (398)
T ss_pred HHHHHHHHHHHHHHcc-chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence 3344445555555544 54443333344444445556677888999887 679999999999999999999999999988
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
. .+|+..|++.+.+.++..+...++.++.
T Consensus 167 ~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 167 V----FGWRSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred c----ccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence 4 6799999988766666655555554443
No 13
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.70 E-value=1.7e-07 Score=73.76 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469 22 PYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV 100 (154)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~ 100 (154)
.+..+....+...+.+...+...+.+.|..| ++|+.+.|+.+....+|.+++|.+.+++.+. .+|++.|++.+..
T Consensus 92 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~----~g~~~~~~~~~~~ 167 (365)
T TIGR00900 92 IWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT----LGIKWAIWVDAVG 167 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHH
Confidence 3333334444444455556677889999887 6799999999999999999999999999874 7899999988777
Q ss_pred HHHHHHHHHHhc
Q psy3469 101 YLFSSTFYIFAA 112 (154)
Q Consensus 101 ~~i~~~~~~~~~ 112 (154)
.+++.+...++.
T Consensus 168 ~~~~~~~~~~~~ 179 (365)
T TIGR00900 168 FAISALLIVSVR 179 (365)
T ss_pred HHHHHHHHHhcc
Confidence 766655544443
No 14
>PRK10054 putative transporter; Provisional
Probab=98.70 E-value=1.3e-07 Score=77.11 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=69.8
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.+..++..+.+.+.+ +.+..+++..+.....+...+...+...|..| ++|+++.|+.+...++|.+++|.+.|++.+
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~ 157 (395)
T PRK10054 79 AITAFASGFIAIPLVN-NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM 157 (395)
T ss_pred HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555554 44433333333333333334556677788765 779999999999999999999999999875
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.+|+..|++.+++.+++.+...++.
T Consensus 158 -----~g~~~~f~~~~~~~~i~~i~~~~~~ 182 (395)
T PRK10054 158 -----QSINLPFWLAAICSAFPLVFIQIWV 182 (395)
T ss_pred -----hccCcHHHHHHHHHHHHHHHHHHHH
Confidence 4699999998888887765554444
No 15
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.70 E-value=1.3e-07 Score=75.52 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=74.9
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.+..++..+...+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.|++.+
T Consensus 76 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 154 (385)
T TIGR00710 76 GLFIFALSSLGLALSN-NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV 154 (385)
T ss_pred HHHHHHHHHHHHHHHc-cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555543 54443333334344445555667778889877 679999999999999999999999999987
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASG 114 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~ 114 (154)
. .+|+..|++.+.+.++..+...++.++
T Consensus 155 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (385)
T TIGR00710 155 W----LSWHAIFAFLSLAGILLSALIFFILPE 182 (385)
T ss_pred H----cCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4 689999999888887777666555443
No 16
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.70 E-value=2.5e-07 Score=75.45 Aligned_cols=103 Identities=9% Similarity=-0.074 Sum_probs=66.9
Q ss_pred hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469 6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK 84 (154)
Q Consensus 6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~ 84 (154)
.+.++.++.+.+.+ +.+...++..+...+.+...+..++.++|..| +.||++.|+++...++|..++|.+.|++.+.
T Consensus 297 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~- 374 (417)
T PRK10489 297 LGSFLAVGLFGLMP-MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM- 374 (417)
T ss_pred HHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH-
Confidence 33444444444433 43333333333333334434556678889887 5699999999999999999999999999984
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 85 PTQAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 85 ~~~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
.+++..|...+.+.++..++.....+
T Consensus 375 ---~g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 375 ---MTPVASASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred ---hchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 56777777777666555544444443
No 17
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.69 E-value=2.1e-07 Score=73.52 Aligned_cols=108 Identities=10% Similarity=0.011 Sum_probs=72.4
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
+.++.++..+...+.+ +.+..++...+...+.+...+.......+..|++|+.+.++......+|..+++++.+.+.+.
T Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (377)
T TIGR00890 74 GGILYGLGFTFYAIAD-SLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINL 152 (377)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhc
Confidence 4445555555555554 444333333333333444344445566677788899999999999999999888787777763
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 84 KPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 84 ~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
.+|++.|++.+++.++..+...++.++.+
T Consensus 153 ----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (377)
T TIGR00890 153 ----EGVPAAFIYMGIIFLLVIVLGAFLIGYPP 181 (377)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHheecCc
Confidence 68999999999888877766666554433
No 18
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.68 E-value=4.4e-07 Score=76.14 Aligned_cols=107 Identities=8% Similarity=0.099 Sum_probs=74.1
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcc-cCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLD-ISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d-~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
+.++.+++.+.+.+.+ +.+..++.-.+...+.+...+.....+.+ +.| ++|+.+.|+......+|..++|.+.|++.
T Consensus 77 ~~~~~~~~~~~~~~a~-~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 77 GGTLFGLASLAAAFSP-TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555666654 55444443333333334434444445545 445 78999999999999999999999999999
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
+. .+||+.|++...+.++..++..++.+++
T Consensus 156 ~~----~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 156 EH----FYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred cc----CChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 84 7899999998888887777666665543
No 19
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.67 E-value=2e-07 Score=82.23 Aligned_cols=103 Identities=14% Similarity=0.138 Sum_probs=74.8
Q ss_pred ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
+++++.+++.+++.+.+ +....+++.++..++.+...+..+.+++|+.| +.||++.|+.+..+.+|++++|.+.|++.
T Consensus 630 ~~~~lsai~~ll~~~~~-s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 630 GSMVLSCISCFFLSFGN-SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV 708 (742)
T ss_pred HHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666665 44333333334344444456678889999988 67999999999999999999999999988
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
+. +....|++++++.++++++.+++
T Consensus 709 ~~-----~~~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 709 GI-----TKAAPILFASAALACGGLLALKL 733 (742)
T ss_pred Hh-----hhHHHHHHHHHHHHHHHHHHHhC
Confidence 73 35678888888888877766554
No 20
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.67 E-value=2.3e-07 Score=76.07 Aligned_cols=113 Identities=11% Similarity=0.054 Sum_probs=76.1
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
++++.++..++.++.+ +.+..++.-.+...+.+...+.....+.|..| ++||.+.|+.+....+|..++|.+.+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 79 IMVLWGIASTATMFAT-GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555566654 54433333333333444444555667788877 679999999999999999999999999874
Q ss_pred Ccc--cccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469 83 GKP--TQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 83 ~~~--~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q 117 (154)
... ...+||+.|++.+...++..++..++.++.++
T Consensus 158 ~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 158 LDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 210 12589999999888877666656556555543
No 21
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.66 E-value=4.1e-07 Score=73.51 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=71.5
Q ss_pred chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
.+..++..+...+.+ +.+..+....+.....+...+..++.+.|..| ++|+.+.|+.+....++..++|.+.+.+.+.
T Consensus 75 ~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~ 153 (392)
T PRK10473 75 AALFIIASLLCSLAE-TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK 153 (392)
T ss_pred HHHHHHHHHHHHHhC-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444444445443 44333333233333334444566778888776 7899999999999999999999999988763
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469 84 KPTQAAWRVVFVAAAVVYLFSSTFYIFAASG 114 (154)
Q Consensus 84 ~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~ 114 (154)
.+|+..|++.+.+.++..+...++.++
T Consensus 154 ----~g~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (392)
T PRK10473 154 ----FPWQSLFYTMAAMGILVLLLSLFILKE 180 (392)
T ss_pred ----cChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 689999999988887776665555443
No 22
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.65 E-value=5.3e-07 Score=73.53 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=72.6
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
++++.++..+...+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.....++|..++|.+.+++.+
T Consensus 91 ~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~ 169 (394)
T PRK10213 91 FAVLLTLSCLLVSFAN-SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE 169 (394)
T ss_pred HHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555554 55544444444444455556677778889886 679999999999999999999999999988
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHH
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFY 108 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~ 108 (154)
. .+|++.|++.+.+.++..+..
T Consensus 170 ~----~gw~~~f~~~~~l~~~~~l~~ 191 (394)
T PRK10213 170 L----IGWRNVFNAAAVMGVLCIFWI 191 (394)
T ss_pred h----cCHHHHHHHHHHHHHHHHHHH
Confidence 4 689999999887666554433
No 23
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.64 E-value=4.2e-07 Score=73.50 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=71.1
Q ss_pred hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469 6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK 84 (154)
Q Consensus 6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~ 84 (154)
+..++.++++.+.+ +.+..+....+..++.+...+.......|..| +++|++.|+.+....+|..++|.+.|++.+.
T Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~- 364 (399)
T PRK05122 287 LVEILGLLLLWLAP-SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW- 364 (399)
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34444444544443 44333333333333334434444455667666 7799999999999999999999999999884
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 85 PTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 85 ~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
.+|+..|++.+++.+++.+...++.+++
T Consensus 365 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (399)
T PRK05122 365 ---FGYPSIFLAAALAALLGLALTWLLYRRA 392 (399)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6799999999988888877766655433
No 24
>PRK03545 putative arabinose transporter; Provisional
Probab=98.62 E-value=4.9e-07 Score=73.14 Aligned_cols=105 Identities=13% Similarity=-0.047 Sum_probs=72.5
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+++..++..+...+.+ +.+..++...+.....+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.+.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~ 158 (390)
T PRK03545 80 LFVLFIASHVLSALAW-NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ 158 (390)
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444555555556554 55443333332222233334556678888876 679999999999999999999999999887
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
. .+|++.|++.+.+.++..+......+
T Consensus 159 ~----~gw~~~f~~~~~~~~l~~~~~~~~~~ 185 (390)
T PRK03545 159 Y----LGWRTTFLAIGGGALITLLLLIKLLP 185 (390)
T ss_pred H----hcHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3 68999999998887777655444433
No 25
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.60 E-value=6.3e-07 Score=73.25 Aligned_cols=103 Identities=12% Similarity=0.171 Sum_probs=72.9
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.+..++..+.+.+.+ +.+.......+.....+...+...+.+.|..| ++++.+.|+.+...++|..++|.+.|++.+
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~ 160 (400)
T PRK11646 82 GMLMRAAGFATMAIAH-EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ 160 (400)
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554 55443333333333344445666778888776 789999999999999999999999999984
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.+|++.|++.+.+.++..++..++.
T Consensus 161 -----~g~~~~f~~~~~~~~~~~i~~~~~~ 185 (400)
T PRK11646 161 -----YDFRLVCATGAVLFVLAAAFNAWLL 185 (400)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5799999998888777765554444
No 26
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.60 E-value=4.3e-07 Score=74.89 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=60.9
Q ss_pred HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469 36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASG 114 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~ 114 (154)
.+...+.....+.|..| ++||++.|+.+....+++.++|.+.+.+.+. ..+|+..|++.+.+.++..+...++.++
T Consensus 132 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~---~~~w~~~f~~~~~~~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 132 QGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW---FNDWHAALYFPAICAIIVALFAFAMMRD 208 (438)
T ss_pred hhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44444555667778776 7799999999999999999999998876552 3689999999998888877666666655
Q ss_pred Ccc
Q psy3469 115 DRQ 117 (154)
Q Consensus 115 ~~q 117 (154)
+++
T Consensus 209 ~~~ 211 (438)
T TIGR00712 209 TPQ 211 (438)
T ss_pred CHH
Confidence 544
No 27
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.58 E-value=5.3e-07 Score=74.47 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=75.8
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.++.+++.++..+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.|++.+
T Consensus 73 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 151 (485)
T TIGR00711 73 STFAFTLGSLLCGVAP-NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE 151 (485)
T ss_pred HHHHHHHHHHHHhCcC-CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence 3444455555555554 55444444444444445555677788899876 779999999999999999999999999988
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
. .+|++.|++.+.+.++..++..++.+
T Consensus 152 ~----~~w~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 152 N----YHWRWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred C----cCceehhhhhhHHHHHHHHHHHHHcC
Confidence 4 78999999988877777665555544
No 28
>PRK12382 putative transporter; Provisional
Probab=98.57 E-value=7.3e-07 Score=72.03 Aligned_cols=103 Identities=13% Similarity=0.150 Sum_probs=72.1
Q ss_pred chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
....++.++++.+.+ +.+..+....+...+.+...+...+...|..| ++||++.|+.++...+|+.++|.+.|++.+.
T Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~ 364 (392)
T PRK12382 286 LLVETVGLLLLWLAP-TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS 364 (392)
T ss_pred HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444 44433333333333344444555566677665 7899999999999999999999999999984
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 84 KPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 84 ~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.+|+..|.+.+.+.+++.+..+++.
T Consensus 365 ----~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 365 ----FGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred ----hCchHHHHHHHHHHHHHHHHHHhhc
Confidence 6899999999998888887766554
No 29
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.55 E-value=3.2e-07 Score=75.92 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=62.4
Q ss_pred HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469 36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASG 114 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~ 114 (154)
.+...+.....+.|..| ++|+.+.|+.+....+|.+++|++.+++.+. ..+|+..|++.+++.++..+++..+.++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~---~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES---WGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 44445566678888887 7899999999999999999999999999873 1389999999988887777766666655
Q ss_pred Cc
Q psy3469 115 DR 116 (154)
Q Consensus 115 ~~ 116 (154)
++
T Consensus 222 ~p 223 (465)
T TIGR00894 222 DP 223 (465)
T ss_pred Cc
Confidence 44
No 30
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.55 E-value=9.9e-07 Score=72.44 Aligned_cols=103 Identities=16% Similarity=0.072 Sum_probs=81.9
Q ss_pred hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469 6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK 84 (154)
Q Consensus 6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~ 84 (154)
.+..+..++..+.+ +.+..++.-.+.....|...+...+...++.| ++|+.+.|++...-.++..+|.+++.++-|.
T Consensus 86 ~lFi~~n~l~alAp-~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~- 163 (394)
T COG2814 86 ALFIVSNLLSALAP-SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL- 163 (394)
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH-
Confidence 34445566666665 66555555555555566666777778888776 7899999999999999999999999999985
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 85 PTQAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 85 ~~~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
.|||..|+..+.+.++..+..+...+
T Consensus 164 ---~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 164 ---FGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 89999999999999999888877776
No 31
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.54 E-value=4.7e-07 Score=75.91 Aligned_cols=104 Identities=13% Similarity=0.024 Sum_probs=72.2
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-c---hHHHHHHHHHHHHHHHHhHhhhhhhh
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-R---FAGILMSFTNCLANLAGLLAPIIAGY 79 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~---~~g~~~g~~~~~~~lg~~i~P~i~G~ 79 (154)
++++.++..+++.+.+ +.+..++.+.+...+.+...+...+.+.|..| + +|+.+.++.+...++|.+++|.+.|+
T Consensus 85 ~~~~~~~g~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~ 163 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSI-YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV 163 (475)
T ss_pred HHHHHHHHHHHHHhcc-cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence 4455555556666554 44333333333334445555667778888765 3 38889999999999999999999999
Q ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 80 VIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 80 i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
+.+. .+|+..|.+.+..++++.+.+.+..
T Consensus 164 l~~~----~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 164 IAEN----YGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHh----cChHHHHHHHHHHHHHHHHHHHHcc
Confidence 9884 6899999998877777665554433
No 32
>KOG2532|consensus
Probab=98.54 E-value=4.3e-07 Score=76.27 Aligned_cols=112 Identities=11% Similarity=0.151 Sum_probs=84.4
Q ss_pred cchhHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 4 GQYGPAVCLVAASYTGC-DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
+.++.+++.++.+.... +.+..+++-.+-....+..++..........| ++|++..++.....++|.+++-++.|++.
T Consensus 109 ~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc 188 (466)
T KOG2532|consen 109 SGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLC 188 (466)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 45566666666665431 22322333333333455555666667777777 88999999999999999999999999999
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccC
Q psy3469 82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQP 118 (154)
Q Consensus 82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~ 118 (154)
+. ..||+.+|++.+++.++-.++|.++..++|++
T Consensus 189 ~s---~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 189 ES---SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred cc---CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 94 48999999999999999999999999877775
No 33
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.54 E-value=1.4e-06 Score=70.52 Aligned_cols=106 Identities=17% Similarity=0.101 Sum_probs=73.6
Q ss_pred chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
.++.+++.++..+.+ +.+..++...+.....+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 165 (406)
T PRK11551 87 VALFGLFSLATAQAW-DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD 165 (406)
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 334444455555554 55444444444444445556667788899876 7799999999999999999999998888763
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 84 KPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 84 ~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
.+|+..|++.+++.++..+...++.+++
T Consensus 166 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (406)
T PRK11551 166 ----AAWRHIFYVGGVGPLLLVPLLMRWLPES 193 (406)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6799999988777666655554544443
No 34
>PRK03699 putative transporter; Provisional
Probab=98.53 E-value=1.7e-06 Score=70.28 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=69.0
Q ss_pred chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
.+..++..++..+.+ +.+..+....+...+.+...+.....+.|..| ++|+.+.+..+....+++.++|.+.+++.+.
T Consensus 79 ~~~~~i~~~l~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 157 (394)
T PRK03699 79 FALMILAVAGLMFSH-SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR 157 (394)
T ss_pred HHHHHHHHHHHHHcc-hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444555543 44443333344444445555566677888777 5699999999999999999999999988763
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHH
Q psy3469 84 KPTQAAWRVVFVAAAVVYLFSSTFYI 109 (154)
Q Consensus 84 ~~~~~~~~~~F~~~~~~~~i~~~~~~ 109 (154)
..+||+.|.+.+.+.++..++++
T Consensus 158 ---~~gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 158 ---SIEWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHH
Confidence 36899999988877766655443
No 35
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.51 E-value=6.1e-07 Score=74.58 Aligned_cols=68 Identities=9% Similarity=-0.021 Sum_probs=56.3
Q ss_pred hhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 41 SGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 41 ~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.....++.+..|++|+.+.|+.+....+|..++|.+.|++.+. .+|++.|++.+++.+++.+...++.
T Consensus 127 ~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~----~gwr~~f~~~~~~~~~~~v~~~~~~ 194 (455)
T TIGR00892 127 QPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFES----FGWRGSFLILGGLLLHCCVCGALMR 194 (455)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH----hChHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445566777788899999999999999999999999999884 6899999999998887766555443
No 36
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.51 E-value=1.1e-06 Score=73.80 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc-------------------c
Q psy3469 26 VGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK-------------------P 85 (154)
Q Consensus 26 ~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~-------------------~ 85 (154)
++...+...+.+...+....+++|..| ++||.+.++.+....+|.++++.+...+.... .
T Consensus 119 ~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (502)
T TIGR00887 119 CFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPA 198 (502)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccch
Confidence 334444444455556777889999887 77999999999999999999999887654210 0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469 86 TQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 86 ~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q 117 (154)
...+||..|.+.++..++..+ +.++.++.+.
T Consensus 199 ~~~~WR~~~~~~~ip~~i~~~-~~~~lpESpr 229 (502)
T TIGR00887 199 VDYMWRILIGFGAVPALLALY-FRLTIPETPR 229 (502)
T ss_pred hcccHHHHHHHHHHHHHHHHH-HHHhCCCCHH
Confidence 124799999766655554433 3445555543
No 37
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.50 E-value=7e-07 Score=72.08 Aligned_cols=76 Identities=18% Similarity=0.348 Sum_probs=60.9
Q ss_pred HHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 33 LGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 33 ~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
..+.+...+...+...+..| +++|+..|+.+.+..+|..++|.+.|++.+. .+|+..|++.+++.+++.+...+.
T Consensus 322 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~----~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 322 GAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN----YGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh----cchhHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566667777666 6799999999999999999999999999884 689999999999988887766554
Q ss_pred c
Q psy3469 112 A 112 (154)
Q Consensus 112 ~ 112 (154)
.
T Consensus 398 ~ 398 (408)
T PRK09874 398 L 398 (408)
T ss_pred H
Confidence 4
No 38
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.49 E-value=9.4e-07 Score=70.75 Aligned_cols=98 Identities=10% Similarity=0.040 Sum_probs=66.1
Q ss_pred chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
.+..+++.+...+.+ +.+..+....+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.+.+.+.
T Consensus 84 ~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 84 IVLFSAGTLACGFAP-GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555554 55443433343334445555666778889776 7799999999999999999999999998874
Q ss_pred cccccchHHHHHHHHHHHHHHH
Q psy3469 84 KPTQAAWRVVFVAAAVVYLFSS 105 (154)
Q Consensus 84 ~~~~~~~~~~F~~~~~~~~i~~ 105 (154)
. ..+|++.|++.+...++..
T Consensus 163 ~--~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 163 W--GDGWRALFFISILPIIFAL 182 (405)
T ss_pred c--CccHHHHHHHHHHHHHHHH
Confidence 1 1359999987655544443
No 39
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.48 E-value=2.3e-06 Score=68.15 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=53.6
Q ss_pred hhhhhhhhcccCc-chHHHH--HHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 40 YSGFKVNHLDISP-RFAGIL--MSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 40 ~~~~~~~~~d~~p-~~~g~~--~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
.+...+...|..| +.|+.+ .+......++|..++|.+.|++.+. .+|++.|++.+.+.++..+...++.++.
T Consensus 105 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T TIGR00899 105 NPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG----FGFTVMFLTAALAFVLCGVLVWLFLPSY 179 (375)
T ss_pred HHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh----cccHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4445556667665 335433 6888888999999999999999874 6899999999888777776666655543
No 40
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.48 E-value=2e-06 Score=69.84 Aligned_cols=105 Identities=15% Similarity=-0.079 Sum_probs=69.9
Q ss_pred chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
.+..+++.+...+.+ +.+..+....+.....+...+..++.+.|..| ++++.+.++......++..++|.+.+++.+.
T Consensus 85 ~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 163 (406)
T PRK15402 85 VAFFILTCLAILLAQ-SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV 163 (406)
T ss_pred HHHHHHHHHHHHHHc-cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444445555544 44333332222222333334556677788776 5688889999988899999999999999874
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469 84 KPTQAAWRVVFVAAAVVYLFSSTFYIFAASG 114 (154)
Q Consensus 84 ~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~ 114 (154)
.+|++.|++.+++.++..+...+..++
T Consensus 164 ----~~w~~~~~~~~~~~~~~~~~~~~~~~~ 190 (406)
T PRK15402 164 ----LPWRGMFVLFAALAALSFFGLWRAMPE 190 (406)
T ss_pred ----cCccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 689999999888888776655554443
No 41
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.47 E-value=1.2e-06 Score=69.77 Aligned_cols=87 Identities=13% Similarity=0.149 Sum_probs=65.7
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV 100 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~ 100 (154)
+.+..+....+..++.+...+......+|..|++++++.|+.+...++|..++|.+.|++.+. .+|+..|++.+.+
T Consensus 287 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~----~g~~~~~~~~~~~ 362 (375)
T TIGR00899 287 SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAER----WSYHAVYWFAIVM 362 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccchhHHHHHHHH
Confidence 333333333333344455555666778888898888999999999999999999999999884 6799999999988
Q ss_pred HHHHHHHHHHh
Q psy3469 101 YLFSSTFYIFA 111 (154)
Q Consensus 101 ~~i~~~~~~~~ 111 (154)
.+++.+...+.
T Consensus 363 ~~~~~~~~~~~ 373 (375)
T TIGR00899 363 LIVALFCLLLI 373 (375)
T ss_pred HHHHHHHHhee
Confidence 88887766443
No 42
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.47 E-value=2.4e-06 Score=69.12 Aligned_cols=71 Identities=15% Similarity=0.103 Sum_probs=56.3
Q ss_pred hhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 39 VYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 39 ~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
..+..++...|..| ++||++.|+.+.+..+|.+++|.+.|++.+. ..+|...|+....+.+++.+..++..
T Consensus 325 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 325 GQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL---GRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc---CCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566778888777 6799999999999999999999999999884 35677778777777777666555443
No 43
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.47 E-value=2.5e-06 Score=68.94 Aligned_cols=104 Identities=13% Similarity=-0.018 Sum_probs=72.3
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.+..++..++..+.+ +.+..++...+...+.+...+.....+.|..| ++++.+.|+......++..++|.+.+++.+
T Consensus 74 ~~~~~~~~~~l~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 152 (382)
T PRK10091 74 LVALCVIGNAMFTLSS-SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ 152 (382)
T ss_pred HHHHHHHHHHHHHHhC-cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence 4455556666666665 55544444344343344444455566777776 579999999999999999999999999987
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
. .+||+.|++.+.+.++..+...+..
T Consensus 153 ~----~gwr~~f~~~~~~~~~~~~~~~~~l 178 (382)
T PRK10091 153 E----FSWRYTFLLIAVFNIAVLASIYFWV 178 (382)
T ss_pred h----ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4 6899999999887776665444433
No 44
>KOG2504|consensus
Probab=98.47 E-value=3.7e-07 Score=77.43 Aligned_cols=106 Identities=12% Similarity=0.077 Sum_probs=78.1
Q ss_pred ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
+++++.+++.+.+++.. +.+..+....+..++.|...+....++.|+.+ ++...+.|+...+..++.+++|++.|++.
T Consensus 370 ~~ll~~gl~~~~~p~~~-~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~ 448 (509)
T KOG2504|consen 370 LTLLIAGLARLFLPFAT-TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLY 448 (509)
T ss_pred HHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeee
Confidence 45666666666666654 44332222233333344444444457888765 88999999999999999999999999999
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
|. +++|...|++++...+++.+++++..
T Consensus 449 d~---tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 449 DI---TGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ec---cCCeeeehhhcChHHHHHHHHHHHhH
Confidence 95 57799999999999999998887766
No 45
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.46 E-value=3.7e-06 Score=69.02 Aligned_cols=106 Identities=15% Similarity=0.066 Sum_probs=70.9
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
++++.+++.+...+.+ +.+..++...+.....+...+..+..+.|..| ++++.+.++.+....++..++|.+.+++.+
T Consensus 87 ~~~~~~~~~~~~~~a~-~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~ 165 (413)
T PRK15403 87 GALIFTLACAATLFTT-SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH 165 (413)
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554 54333333232222223323445567888777 568999999999999999999999999887
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASG 114 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~ 114 (154)
. .+|++.|++.+++.+++.+...+..++
T Consensus 166 ~----~gw~~~f~~~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 166 F----VHWKVLFAIIAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred h----cCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3 689999999988888776654444443
No 46
>PRK10504 putative transporter; Provisional
Probab=98.45 E-value=3.2e-06 Score=69.96 Aligned_cols=103 Identities=13% Similarity=0.129 Sum_probs=72.5
Q ss_pred hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469 6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK 84 (154)
Q Consensus 6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~ 84 (154)
++.+++.+...+.+ +.+..++...+...+.+...+...+.+.|..| ++++.+.|+.+...++|..++|.+.|++.+.
T Consensus 83 ~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~- 160 (471)
T PRK10504 83 VLFTLGSLFCALSG-TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY- 160 (471)
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-
Confidence 34444444444443 44443333344444444445666777888877 6799999999999999999999999999984
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 85 PTQAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 85 ~~~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
.+|++.|.+...+..++.+......+
T Consensus 161 ---~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 161 ---ASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 68999999988877777666655543
No 47
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.44 E-value=1.4e-06 Score=73.58 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=59.0
Q ss_pred HHHHhhhhhhhhhhcccCc-c--hHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469 34 GFNGAVYSGFKVNHLDISP-R--FAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 34 ~~~g~~~~~~~~~~~d~~p-~--~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
.+.|...+...+.+.|..| + +|+++.++.+...++|++++|.+.|++.+. .+|++.|.+++..++++.+.+++
T Consensus 112 iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~----~Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 112 CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE----YSWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh----hChHHHHHHHHHHHHHHHHHHHH
Confidence 3345545666778889776 3 599999999999999999999999999874 68999999988777777666544
Q ss_pred h
Q psy3469 111 A 111 (154)
Q Consensus 111 ~ 111 (154)
.
T Consensus 188 ~ 188 (493)
T PRK15462 188 G 188 (493)
T ss_pred h
Confidence 3
No 48
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.44 E-value=3e-06 Score=71.31 Aligned_cols=80 Identities=9% Similarity=0.215 Sum_probs=65.1
Q ss_pred HHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHH
Q psy3469 30 TIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFY 108 (154)
Q Consensus 30 ~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~ 108 (154)
.+...+.++..+..++..+++.| +..++..|+.++...+|+.+++.+.|++.|. .||+..|.+.+++.+++.+..
T Consensus 324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~----~G~~~~f~~~~~~~l~~l~~~ 399 (491)
T PRK11010 324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA----HGWPTFYLFSVAAAVPGLLLL 399 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hChHHHHHHHHHHHHHHHHHH
Confidence 33333445556677888999887 5699999999999999999999999999994 679999999999999988777
Q ss_pred HHhcc
Q psy3469 109 IFAAS 113 (154)
Q Consensus 109 ~~~~~ 113 (154)
.+.++
T Consensus 400 ~~~~~ 404 (491)
T PRK11010 400 LVCRQ 404 (491)
T ss_pred HHHHh
Confidence 76643
No 49
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.43 E-value=4.4e-06 Score=69.98 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=51.8
Q ss_pred HhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 37 GAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 37 g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
+...+.......++.| +.||++.|+.+..+.+++.++|.+.|++.+. .++|+..+++.....+++.+..+++
T Consensus 357 ~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~---~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 357 NCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES---TQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHHHHHHHHh
Confidence 3344556667778887 6799999987777888899999999999874 3457766666666666666555444
No 50
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.43 E-value=2e-06 Score=68.55 Aligned_cols=78 Identities=15% Similarity=0.085 Sum_probs=57.6
Q ss_pred HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCccc----ccchHHHHHHHHHHHHHHHHHHHH
Q psy3469 36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPT----QAAWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~----~~~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
.....+...+.+.|..| ++|+.+.|+......+|.+++|.+.+.+....+. ..+|+..|++.+++.++..+..++
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 97 SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 34334566778899876 7799999999999999999999999988874210 123999999988877775554333
Q ss_pred hcc
Q psy3469 111 AAS 113 (154)
Q Consensus 111 ~~~ 113 (154)
..+
T Consensus 177 ~~~ 179 (356)
T TIGR00901 177 LAK 179 (356)
T ss_pred hcc
Confidence 333
No 51
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.43 E-value=1.7e-06 Score=71.83 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=49.6
Q ss_pred hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHH
Q psy3469 41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~ 107 (154)
+...+.++|..| +++|++.|+.+....+|+.++|.+.|++.+. .+|+..|...++...+..+.
T Consensus 385 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~----~g~~~~~~~~~~~~~~~~~~ 448 (496)
T PRK03893 385 GLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR----LDLGTALASLSFSLTFVVIL 448 (496)
T ss_pred hhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc----CChHHHHHHHHHHHHHHHHH
Confidence 455667888877 6799999999999999999999999999984 67888776665554444333
No 52
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.42 E-value=2e-06 Score=71.55 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=55.2
Q ss_pred hhhhcccCc-chHHHHHHHHHHHHHH-HHhHhhhhhhhccc-Ccc-------cccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 44 KVNHLDISP-RFAGILMSFTNCLANL-AGLLAPIIAGYVIQ-GKP-------TQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 44 ~~~~~d~~p-~~~g~~~g~~~~~~~l-g~~i~P~i~G~i~~-~~~-------~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.....|..| +.+|++.|+.+.++++ |++++|.+.|++.| ..+ ...+|+..|.+..++.+++.+..+++.
T Consensus 371 ~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 371 GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668887 5799999999999997 77999999999999 110 025699999999888888877776654
No 53
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.41 E-value=5.1e-06 Score=68.45 Aligned_cols=77 Identities=10% Similarity=0.114 Sum_probs=60.1
Q ss_pred HhhhhhhhhhhcccCc-chHHHHHHHHH-HHHHHHHhHhhhhhhhcccCccc--ccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 37 GAVYSGFKVNHLDISP-RFAGILMSFTN-CLANLAGLLAPIIAGYVIQGKPT--QAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 37 g~~~~~~~~~~~d~~p-~~~g~~~g~~~-~~~~lg~~i~P~i~G~i~~~~~~--~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
+...+.....+.|..| +++|++.|+.+ ....+|.+++|.+.|++.+..+. +.+|+..|.+.+++.+++.+.+.++.
T Consensus 323 ~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~ 402 (418)
T TIGR00889 323 DFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFF 402 (418)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455567788887 67999999997 56789999999999999985221 14699999999998888877777776
Q ss_pred c
Q psy3469 113 S 113 (154)
Q Consensus 113 ~ 113 (154)
+
T Consensus 403 ~ 403 (418)
T TIGR00889 403 K 403 (418)
T ss_pred C
Confidence 4
No 54
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.41 E-value=2.7e-06 Score=69.11 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=64.9
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV 100 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~ 100 (154)
+.+..+....+..++.+...+......+|..|+++|++.|+.+...++|..++|.+.|++.+. .+|+..|++.+.+
T Consensus 304 ~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~----~g~~~~~~~~~~~ 379 (393)
T PRK15011 304 SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEI----WNYHAVFWFALVM 379 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHH
Confidence 333333333333334444445556677888898899999999999999999999999999984 6899999988888
Q ss_pred HHHHHHHHHHh
Q psy3469 101 YLFSSTFYIFA 111 (154)
Q Consensus 101 ~~i~~~~~~~~ 111 (154)
.+++.+..++.
T Consensus 380 ~~~~~~~~~~~ 390 (393)
T PRK15011 380 IIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHhh
Confidence 88877766554
No 55
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.41 E-value=2.2e-06 Score=69.15 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=58.1
Q ss_pred hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 40 YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 40 ~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
.+.....+.|..| ++|+.+.|+.+....+|.+++|.+.|.+.+. .+|+..|++.+.+.+++.+...++.+++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 124 VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS----YGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3445566777666 6799999999999999999999999999874 6799999999988887777666655443
No 56
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.41 E-value=5.9e-06 Score=67.26 Aligned_cols=104 Identities=12% Similarity=0.026 Sum_probs=71.8
Q ss_pred ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
.++...+++.+..++.+ +.+..++.-.+...+.+...+.....+.+..|++|+.+.|+.+....+|..+++.+.+++.+
T Consensus 79 ~~~~l~~~~~~~~~~a~-~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~ 157 (393)
T PRK09705 79 ISLLLIAVGALMRELYP-QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQ 157 (393)
T ss_pred HHHHHHHHHHHHHHHCc-chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777775 55444444444444444444555667777778889999999999999999999999999887
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
. ..+|+..|.+.+...++..+.+++
T Consensus 158 ~---~~~w~~~~~~~~~~~~~~~~~~~~ 182 (393)
T PRK09705 158 H---SETWYQTLAWWALPAVVALFAWWW 182 (393)
T ss_pred h---cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 247999887766555544443333
No 57
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.38 E-value=3.8e-06 Score=67.91 Aligned_cols=105 Identities=13% Similarity=-0.026 Sum_probs=67.9
Q ss_pred chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
++..++..+...+.+ +.+..++...+...+.+...+.......|..+ ++++.+.++.+....++..++|.+.|++.+.
T Consensus 80 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 158 (394)
T PRK11652 80 MSIFILGTLVALFAH-SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL 158 (394)
T ss_pred HHHHHHHHHHHHHHc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444445443 44333333333333333333444556677666 6799999999999999999999999999873
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469 84 KPTQAAWRVVFVAAAVVYLFSSTFYIFAASG 114 (154)
Q Consensus 84 ~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~ 114 (154)
.+|+..|++.+.+.++..+...++.++
T Consensus 159 ----~g~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (394)
T PRK11652 159 ----FGWRACYLFLLLLGAGVTFSMARWMPE 185 (394)
T ss_pred ----cChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 679999999887766665554444443
No 58
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.37 E-value=2.3e-06 Score=70.49 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=57.6
Q ss_pred hhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 44 KVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 44 ~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
.....|..| +++|++.|+.+++.++|++++|.+.|++.|. .+|+..|++.+++.+++++..+.+.++++
T Consensus 359 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~----~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 359 GMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI----WHWTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred HHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh----cccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345677775 7899999999999999999999999999984 67999999999999888876666554443
No 59
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.37 E-value=3.6e-06 Score=65.59 Aligned_cols=102 Identities=19% Similarity=0.265 Sum_probs=77.0
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.+...++.+.....+ +.+.......+...+.+...+...+...|..| ++|++..|+.+...+++..++|.+.|.+.+
T Consensus 248 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 248 GLLLAALGLLLLALAP-SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555543 44444444454555555556778888999887 789999999999999999999999999998
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
. .+|+..|++.+.+.+++.+...+
T Consensus 327 ~----~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 327 T----GGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred c----cCcchHHHHHHHHHHHHHHHhee
Confidence 4 78999999999998888776543
No 60
>KOG4686|consensus
Probab=98.36 E-value=5.3e-06 Score=65.99 Aligned_cols=99 Identities=17% Similarity=0.313 Sum_probs=69.6
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcch-HHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHH
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRF-AGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAV 99 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~-~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~ 99 (154)
+++..+.++.++..+.. ...|.+++.+.|++ .|+++|+++.+.++|-.+.|+++|.+.|..++...-...|..++.
T Consensus 354 sPy~~m~~lGLsysllA---cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~ 430 (459)
T KOG4686|consen 354 SPYTSMTFLGLSYSLLA---CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL 430 (459)
T ss_pred cHHHHHHHHhhhHHHHH---HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence 55666666655554432 34789999999955 899999999999999999999999999964322222234555666
Q ss_pred HHHHHHHHHHHhccCCccCCCCC
Q psy3469 100 VYLFSSTFYIFAASGDRQPWDNP 122 (154)
Q Consensus 100 ~~~i~~~~~~~~~~~~~q~w~~~ 122 (154)
+.++...+.+...++++..-++.
T Consensus 431 ~aL~svgil~~~N~kq~gnLN~~ 453 (459)
T KOG4686|consen 431 MALTSVGILFYLNKKQSGNLNRK 453 (459)
T ss_pred HHHHHHHHHhheeccccCCCCCC
Confidence 66666666666666666655553
No 61
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.36 E-value=3.8e-06 Score=66.31 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHH
Q psy3469 29 LTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 29 l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~ 107 (154)
..+..+..+ ..+..++..+|..| ++||++.|+.+.+.++|+.++|.+.|++.+. .++|+..|++.+.+.+++.+.
T Consensus 319 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~---~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 319 VALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT---TGSFAGALMVVAALALIGALS 394 (399)
T ss_pred HHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC---CCchhHHHHHHHHHHHHHHHH
Confidence 333333333 45678888999877 6799999999999999999999999999985 233999999998888888776
Q ss_pred HHH
Q psy3469 108 YIF 110 (154)
Q Consensus 108 ~~~ 110 (154)
.++
T Consensus 395 ~~~ 397 (399)
T TIGR00893 395 YLL 397 (399)
T ss_pred HHH
Confidence 654
No 62
>TIGR00898 2A0119 cation transport protein.
Probab=98.36 E-value=5.3e-06 Score=69.26 Aligned_cols=102 Identities=11% Similarity=0.157 Sum_probs=70.7
Q ss_pred cchhHHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 4 GQYGPAVCLVAASYTGCDP-YLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
++++.+++.+++.+.+... +..+.+..++.++.+...+..+....|..| +.|+++.|+.+.++.+|++++|.+.+ +.
T Consensus 391 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~ 469 (505)
T TIGR00898 391 SLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LG 469 (505)
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH
Confidence 3445555555555554222 333444445555555556777888999888 67999999999999999999999999 44
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
+ .++...|++.+++.+++.++.+++
T Consensus 470 ~-----~~~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 470 E-----KWLFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred H-----HHHhhHHHHHHHHHHHHHHHHHcC
Confidence 3 446677888777777776665544
No 63
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.35 E-value=4.7e-06 Score=69.03 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=66.8
Q ss_pred cchhHHHHHHHHhhcC---CChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhH-hhhhhh
Q psy3469 4 GQYGPAVCLVAASYTG---CDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLL-APIIAG 78 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i-~P~i~G 78 (154)
++++.++..+.+.+.+ .+.+..+.+..+...+.+...+.....+.|..| ++||.+.|+.+....+|+.+ +|.+..
T Consensus 99 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 178 (452)
T PRK11273 99 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLL 178 (452)
T ss_pred HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3344444444444432 123233333333333444444555566777666 77999999999999998755 454433
Q ss_pred hcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccC
Q psy3469 79 YVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQP 118 (154)
Q Consensus 79 ~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~ 118 (154)
.+.. ..+|++.|++.+.+.++..++.+++.++++++
T Consensus 179 ~~~~----~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~ 214 (452)
T PRK11273 179 GMAW----FNDWHAALYMPAFAAILVALFAFAMMRDTPQS 214 (452)
T ss_pred HHHH----hccHHHHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence 3333 25899999999888777766666666655543
No 64
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.35 E-value=6.1e-06 Score=70.30 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=79.5
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.++.+++++.+++.+ +.+..+..+.+..++.........+..+...| +.+|++.+++++....+..+|.++.|.+.+
T Consensus 290 ~~~~~a~~~~~lal~~-~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 290 ASLLFALALLLLALSP-SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777765 66666665665555555555667778888888 559999999999999999999999999998
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
. .+.+..+.+.+++++++.++.....
T Consensus 369 ~----~g~~~al~~a~~~lll~~~~~~~~~ 394 (524)
T PF05977_consen 369 H----FGVRTALLIAGAALLLSALIALRFP 394 (524)
T ss_pred H----hCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 6788888888887777777665553
No 65
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.35 E-value=2.2e-06 Score=70.09 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=69.2
Q ss_pred chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHH-HHHHHHHHHhHhhhhhhhccc
Q psy3469 5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSF-TNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~-~~~~~~lg~~i~P~i~G~i~~ 82 (154)
.++.++.++++.+.+ +.+..+....+.....+.........+.+..| +.+++..+. .++...+|.+++|.+.|++.|
T Consensus 299 ~~l~~~~~~l~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~ 377 (420)
T PRK09528 299 GTIMAVRIIGSGFAT-GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD 377 (420)
T ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555554 55433332232222233333344456677666 668887766 678899999999999999999
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
. .+|+..|.+.+++.+++.++..++.+++
T Consensus 378 ~----~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 378 S----IGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred h----hCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4 6799999999998888777666655443
No 66
>KOG1330|consensus
Probab=98.34 E-value=1.8e-07 Score=77.72 Aligned_cols=107 Identities=9% Similarity=-0.002 Sum_probs=80.2
Q ss_pred hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469 6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK 84 (154)
Q Consensus 6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~ 84 (154)
.+=.++.+..++.. +.|..+++-.+...+-....+...+.+.|..| ++|+.+.|+.+++...|..+|-.+.+++...
T Consensus 106 ~iW~~Av~~~~fs~-~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~- 183 (493)
T KOG1330|consen 106 FIWTLAVFASGFSN-HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL- 183 (493)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC-
Confidence 33334444445442 55655555555555544556778889999998 6799999999999999999999999999885
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 85 PTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 85 ~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
+..||+.|+..+.+.++.+++..++.++.+
T Consensus 184 --~~~Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 184 --TFWWRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred --ccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 455999999999999988877777665443
No 67
>PRK11043 putative transporter; Provisional
Probab=98.33 E-value=6.8e-06 Score=66.57 Aligned_cols=101 Identities=12% Similarity=0.081 Sum_probs=66.3
Q ss_pred hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469 6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK 84 (154)
Q Consensus 6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~ 84 (154)
+..++..+...+.+ +.+..++...+...+.+...+...+...|..| ++++...+..+....++..++|.+.|++.+.
T Consensus 79 ~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~- 156 (401)
T PRK11043 79 SLFALGSLGMLWVE-SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH- 156 (401)
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 34444444444444 44333332222222223333445567778776 5688889999999999999999999999884
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 85 PTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 85 ~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
.+|+..|++.+.+.++..+...++
T Consensus 157 ---~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 157 ---FGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHc
Confidence 689999999888877776655444
No 68
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.33 E-value=4e-06 Score=68.31 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=62.5
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.+..+++.++..+.+ +.+..++...+...+.+...+.....+.|..| ++|+.+.|+......+|.+++|.+.+.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~ 167 (426)
T PRK12307 89 SIVAYSVGTGLSGLAS-GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE 167 (426)
T ss_pred HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence 3444455555555543 44433333333333334445566678888777 679999999999999999999999999887
Q ss_pred CcccccchHHHHHHHHH
Q psy3469 83 GKPTQAAWRVVFVAAAV 99 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~ 99 (154)
. .+|++.|++...
T Consensus 168 ~----~~w~~~f~i~~~ 180 (426)
T PRK12307 168 A----YGWRAAFFVGLL 180 (426)
T ss_pred c----CCHHHHHHHHHH
Confidence 4 689999987543
No 69
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.31 E-value=9.1e-06 Score=66.13 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=69.2
Q ss_pred cchhHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhc
Q psy3469 4 GQYGPAVCLVAASYTGC--DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYV 80 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i 80 (154)
+.++.++++..+.+.+. +.+....+..+..++.....+...+.+.|..| ++|+.+.++......+|.++++.+.+++
T Consensus 74 ~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l 153 (402)
T PRK11902 74 TQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL 153 (402)
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455555555555421 22322222223334444445677888899877 5699999999999999999999999998
Q ss_pred ccCcccccchHHHHHHHHHHHHHHHHH
Q psy3469 81 IQGKPTQAAWRVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 81 ~~~~~~~~~~~~~F~~~~~~~~i~~~~ 107 (154)
.+. ..+|+..|++.+.+.++..+.
T Consensus 154 ~~~---~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 154 ADR---VLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred Hhc---ccCHHHHHHHHHHHHHHHHHH
Confidence 873 248999999988887766554
No 70
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.31 E-value=4.4e-06 Score=70.46 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=69.1
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-c--hHHHHHHHHHHHHHHHHhHhhhhhhhc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-R--FAGILMSFTNCLANLAGLLAPIIAGYV 80 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~--~~g~~~g~~~~~~~lg~~i~P~i~G~i 80 (154)
|.++.+++.+++.+........++.+.+...+.+...+...+.+.|..| + +|+.+.++.+...++|.+++|.+.|++
T Consensus 87 g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l 166 (489)
T PRK10207 87 GAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555443112222223333334445556667788899775 4 358899999999999999999999999
Q ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 81 IQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 81 ~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
.+. .+|++.|++.++..+++.+.+.+.
T Consensus 167 ~~~----~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 167 ADK----FGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHh----hChHHHHHHHHHHHHHHHHHHHHc
Confidence 884 689999999776665555554443
No 71
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.30 E-value=9.9e-06 Score=65.80 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=52.9
Q ss_pred hhhhhhhhcccCc-chH--HHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 40 YSGFKVNHLDISP-RFA--GILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 40 ~~~~~~~~~d~~p-~~~--g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
.+.......|..+ +.| +...++.+...++|.+++|++.|++.+. .+|+..|++.+...++..+...++.++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~----~gw~~~f~~~~~~~~~~~~~~~~~~~~~ 197 (393)
T PRK15011 123 NPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG----FSFTVMYLSAAVAFIVCGVMVWLFLPSM 197 (393)
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh----cChHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 3444455566544 323 4556888889999999999999999874 6899999999888777776666555544
No 72
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.29 E-value=6e-06 Score=69.71 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=68.4
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-c--hHHHHHHHHHHHHHHHHhHhhhhhhhc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-R--FAGILMSFTNCLANLAGLLAPIIAGYV 80 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~--~~g~~~g~~~~~~~lg~~i~P~i~G~i 80 (154)
+.++.+++.+++.+...+.....+...+...+.+...+...+.+.|..| + +++.+.++.+.+.++|.+++|.+.|++
T Consensus 94 g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l 173 (500)
T PRK09584 94 GAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWL 173 (500)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555543122222222233333345445566678888765 2 255688899999999999999999999
Q ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 81 IQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 81 ~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
.+. .+|++.|.+.++..+++.+.+++.
T Consensus 174 ~~~----~g~~~~F~i~~i~~~i~~i~~~~~ 200 (500)
T PRK09584 174 AAK----YGWSVAFALSVVGMLITVVNFAFC 200 (500)
T ss_pred HHh----hCHHHHHHHHHHHHHHHHHHHHHh
Confidence 884 689999999887777776655543
No 73
>PTZ00207 hypothetical protein; Provisional
Probab=98.29 E-value=1.2e-05 Score=69.47 Aligned_cols=108 Identities=10% Similarity=-0.103 Sum_probs=67.2
Q ss_pred cchhHHHHHHHHhhcC-----CChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhh
Q psy3469 4 GQYGPAVCLVAASYTG-----CDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAG 78 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G 78 (154)
|.+..+++.++..+.. .+.+...+...+...+.++........+.+..|++||.+.|+......+|+++.+.+..
T Consensus 97 g~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~ 176 (591)
T PTZ00207 97 SMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQL 176 (591)
T ss_pred HHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555554431 13333333333333333333444555777788999999999999999999986555544
Q ss_pred hcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 79 YVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 79 ~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
.+.. .+|+..|++.+.+.++..+++.++.+..+
T Consensus 177 ~l~~-----~~~~~~fl~l~vl~~vv~ll~~~~vr~p~ 209 (591)
T PTZ00207 177 AFFS-----DNTSAYFFFLMSFALVVGILAIVFMRLPP 209 (591)
T ss_pred HHHH-----HhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence 4443 24788888888888877777777665443
No 74
>PRK09952 shikimate transporter; Provisional
Probab=98.29 E-value=1.2e-05 Score=66.49 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHH-HHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469 29 LTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLAN-LAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST 106 (154)
Q Consensus 29 l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~-lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~ 106 (154)
..+...+.+...+..++.+.|..| +.|+++.|+.+..+. +++.++|.+.|++.+. ..++|...|.+.+++.+++.+
T Consensus 350 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~--~~~~~~~~~~~~~~~~~i~~v 427 (438)
T PRK09952 350 IMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTY--FGGSWHSVAIYLLAGCLISAM 427 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHH
Confidence 333344455556678889999887 679999999776654 8999999999999884 124688899988888888887
Q ss_pred HHHHh
Q psy3469 107 FYIFA 111 (154)
Q Consensus 107 ~~~~~ 111 (154)
..++.
T Consensus 428 ~~~~~ 432 (438)
T PRK09952 428 TALLM 432 (438)
T ss_pred HHHHc
Confidence 76654
No 75
>PRK10054 putative transporter; Provisional
Probab=98.29 E-value=6.6e-06 Score=67.13 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=58.1
Q ss_pred HhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 37 GAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 37 g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
+...+..++.+.+..| +.+|++.|..+ ...+|.+++|.+.|++.|. .++...|++.+....++.++. +.+.+
T Consensus 313 ~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~----~g~~~~~~~~~~~~~~~~~~~--~~~~~ 385 (395)
T PRK10054 313 IIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT----LPPWSLFVILALAIVAAWLLM--LKGMR 385 (395)
T ss_pred HHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH----cChhhHHHHHHHHHHHHHHHH--Hhccc
Confidence 3334555667778777 66899988765 6779999999999999995 567777777655555444433 36667
Q ss_pred ccCCCCCCC
Q psy3469 116 RQPWDNPNN 124 (154)
Q Consensus 116 ~q~w~~~~~ 124 (154)
..+|.+|..
T Consensus 386 ~~~~~~~~~ 394 (395)
T PRK10054 386 ARPWGQPAL 394 (395)
T ss_pred cCcccCCcC
Confidence 779999853
No 76
>PRK03545 putative arabinose transporter; Provisional
Probab=98.28 E-value=1.1e-05 Score=65.17 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=59.2
Q ss_pred hhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 41 SGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 41 ~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
+.....+.+..|+.+|.+.|+.+...++|..++|.+.|++.+. .+++..|.+.+.+.+++.+...+..+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 313 LAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLH----LGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445666777888899999999999999999999999999985 78999999999999888887766653
No 77
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.28 E-value=1.4e-05 Score=67.27 Aligned_cols=103 Identities=13% Similarity=0.052 Sum_probs=70.4
Q ss_pred chhHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 5 QYGPAVCLVAASYTGC--DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
.+..++++..+++... +.+.......+...+.+.......+...|..| ++||.+.|+......+|.++++.+.+++.
T Consensus 88 ~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 88 QLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445421 23333333333333444445567788889887 78999999999999999999999999998
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469 82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
+. ..+|+..|++.+.+.++..+..++
T Consensus 168 ~~---~~GWr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 168 DR---YLGWQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred hc---ccCHHHHHHHHHHHHHHHHHHHHh
Confidence 72 258999999998887776554443
No 78
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.28 E-value=1.1e-05 Score=67.04 Aligned_cols=90 Identities=11% Similarity=0.057 Sum_probs=61.6
Q ss_pred chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
.+..++..+.+.+.+ +.+..++...+...+.+...+.....+.|..| ++|+.+.|+.+....+|..++|.+.+++.+.
T Consensus 92 ~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 170 (496)
T PRK03893 92 IVLFSVGTLACGFAP-GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV 170 (496)
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444455555543 44433333333333334445566677888776 6799999999999999999999999999884
Q ss_pred cccccchHHHHHHHHH
Q psy3469 84 KPTQAAWRVVFVAAAV 99 (154)
Q Consensus 84 ~~~~~~~~~~F~~~~~ 99 (154)
.+|++.|++...
T Consensus 171 ----~~w~~~f~~~~~ 182 (496)
T PRK03893 171 ----WGWRALFFIGIL 182 (496)
T ss_pred ----CCHHHHHHHHHH
Confidence 789999987543
No 79
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.27 E-value=3e-06 Score=69.95 Aligned_cols=107 Identities=18% Similarity=0.211 Sum_probs=75.7
Q ss_pred cchhHHHHHHHHhhcCCC-hhH-HHHHHHHHHHHHHhhhhhhhhhhcccCcch-HHHHHHHHHHHHHH-HHhHhhhhhhh
Q psy3469 4 GQYGPAVCLVAASYTGCD-PYL-TVGILTIGLGFNGAVYSGFKVNHLDISPRF-AGILMSFTNCLANL-AGLLAPIIAGY 79 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~-~~~-~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~-~g~~~g~~~~~~~l-g~~i~P~i~G~ 79 (154)
.+++..+++...-..+.+ .+. .+.+++++....|. +...-....|+.|++ .|++.|+.+.++++ |..++..+.|+
T Consensus 327 ~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGP-qmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~ 405 (448)
T COG2271 327 FMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGP-QMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGY 405 (448)
T ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhH-HHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCccee
Confidence 344444444444444422 233 33333444444444 344556778899965 89999999999999 99999999999
Q ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 80 VIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 80 i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
+.|. .+|...|++..+..+++.++++.+.+.+
T Consensus 406 i~d~----~gW~g~Fi~~~~~a~l~~lll~~~~~~~ 437 (448)
T COG2271 406 IADT----WGWDGGFIVLSIAALLAILLLLPVWNAE 437 (448)
T ss_pred eEec----CCCcchHHHHHHHHHHHHHHHHHHHhhc
Confidence 9994 7899999999999988888777776544
No 80
>TIGR00898 2A0119 cation transport protein.
Probab=98.26 E-value=3.8e-06 Score=70.11 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=72.2
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.++.+++.++..+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.++......+|.+++|.+.+.+.
T Consensus 163 ~~~~~~i~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~- 240 (505)
T TIGR00898 163 STLVTAVSGVLTAFSP-NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP- 240 (505)
T ss_pred HHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 4445555555666655 55544444444444455556677889999877 67999999999999999999998876653
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
+|++.|++.++..++..+.+ ++.++.
T Consensus 241 ------~wr~~~~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 241 ------DWRWLQLAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred ------HHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 29999999988877776655 444443
No 81
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.25 E-value=1.8e-05 Score=64.35 Aligned_cols=70 Identities=9% Similarity=-0.012 Sum_probs=57.6
Q ss_pred hhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 43 FKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 43 ~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
.++...|..| ++|+++.|+.+....+|..++|++.+++.+. .+||..|++.+.+.++..+++.++.++++
T Consensus 99 ~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~----~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 99 AFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA----GGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3445567665 7899999999999999999999999999874 78999999988888887776666665544
No 82
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.25 E-value=1.6e-05 Score=64.79 Aligned_cols=65 Identities=28% Similarity=0.272 Sum_probs=55.5
Q ss_pred hhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 43 FKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 43 ~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
......|..|+++|++.|+.+...++++.++|.+.|++.+. .+|...|++.+++.+++.+...+.
T Consensus 336 ~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~----~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 336 LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF----FGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cchHHHHHHHHHHHHHHHHHHHHh
Confidence 34566778889999999999999999999999999999985 679999999998888877765544
No 83
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.25 E-value=6.1e-06 Score=67.08 Aligned_cols=94 Identities=10% Similarity=0.023 Sum_probs=67.6
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccc
Q psy3469 9 AVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQ 87 (154)
Q Consensus 9 ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~ 87 (154)
++....+.+.. +....+.++.++.++.....+..+++.+|..| +.||++.|+.+..+++++.++|++.|.+..
T Consensus 268 a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~----- 341 (368)
T TIGR00903 268 AAFFLALAFEL-NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS----- 341 (368)
T ss_pred HHHHHHHHHcc-ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-----
Confidence 33333444333 34444445555555555556678889999888 579999999999999999999999998873
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYI 109 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~ 109 (154)
+....|.+.+...+++.+..+
T Consensus 342 -~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 342 -SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred -CHHHHHHHHHHHHHHHHHHHH
Confidence 356778777888887777654
No 84
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.24 E-value=6.8e-06 Score=64.02 Aligned_cols=102 Identities=19% Similarity=0.257 Sum_probs=74.1
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.+..+++.+...+.+ +.+..+....+...+.+...+...+...|..| ++|+.+.|+.+....+|..++|.+.+.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 70 GLLLFALGSLLLAFAS-SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555543 54444444444444455556677788899887 579999999999999999999999999988
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
. .+|+..|++.+.+.+++.+...+
T Consensus 149 ~----~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
T cd06174 149 S----LGWRWLFLILAILGLLLALLLLF 172 (352)
T ss_pred H----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 4 66999999988887777665443
No 85
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.24 E-value=6e-06 Score=72.98 Aligned_cols=109 Identities=12% Similarity=0.017 Sum_probs=72.6
Q ss_pred chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
+++.+++.++..+.+ +.+..+++..+..++.+...+..++++.|+.| ++||...++++.+..+|.+++|.++..+...
T Consensus 239 lil~~i~~ll~afa~-s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~ 317 (742)
T TIGR01299 239 LSVNGFFAFFSSFVQ-GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPH 317 (742)
T ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555554 54444444445555556666788889999887 7799999999999999999999887766542
Q ss_pred cc---------cccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 84 KP---------TQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 84 ~~---------~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
.+ ...+||+.|++.++..++..+. .++.++.
T Consensus 318 ~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~-~~~lPES 357 (742)
T TIGR01299 318 YGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA-LTFMPES 357 (742)
T ss_pred ccchhccccccccccHHHHHHHHHHHHHHHHHH-HHHcCCC
Confidence 11 1246999998877766655443 3444444
No 86
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.24 E-value=5.9e-06 Score=67.51 Aligned_cols=102 Identities=9% Similarity=0.031 Sum_probs=63.9
Q ss_pred hHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc
Q psy3469 7 GPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP 85 (154)
Q Consensus 7 ~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~ 85 (154)
..++.++.+.+.+ +.+..+....+...+.+...+...+.+.+..| +++|++.|+.+++..+|..++|.+.|++.|..+
T Consensus 283 ~~~~~~~~l~~~~-~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 283 IMSLSMFPIGMVS-NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 3344444444443 44333222222223333444566778888877 779999999999999999999999999998522
Q ss_pred cccchHHHHHHHHHHHHHHHHHHH
Q psy3469 86 TQAAWRVVFVAAAVVYLFSSTFYI 109 (154)
Q Consensus 86 ~~~~~~~~F~~~~~~~~i~~~~~~ 109 (154)
+.......|+..+.+.+++.+...
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 362 ALNQPELPWMMLGIIGLITLLALY 385 (400)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHH
Confidence 212245666666666666655433
No 87
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.23 E-value=6.6e-06 Score=66.78 Aligned_cols=69 Identities=14% Similarity=0.074 Sum_probs=57.5
Q ss_pred hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
+..+..+.|..| ++||++.|+.+.+.+++++++|.+.|++.+. .+|++.|++.+++.+++.+...++.+
T Consensus 402 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~----~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 402 PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES----IGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred CeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccceehhHHHHHHHHHHHHheecc
Confidence 445566688877 6799999999999999999999999999884 57999999998888888777665543
No 88
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.23 E-value=1.6e-05 Score=64.89 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=55.9
Q ss_pred HHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHH
Q psy3469 35 FNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYI 109 (154)
Q Consensus 35 ~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~ 109 (154)
+.+...+...+.+.|..| ++++.+.++.+...++|..++|.+.|++.+. .+|++.|++.+...+++.+...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~----~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T PRK10489 123 FGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA----GGVAWNYGLAAAGTFITLLPLL 194 (417)
T ss_pred HHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHH
Confidence 344444556677888776 6799999999999999999999999999873 6799999888777766655443
No 89
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.23 E-value=6.9e-06 Score=66.66 Aligned_cols=84 Identities=13% Similarity=-0.004 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhh---hhcccCcccccchHHHHHHHHHHH
Q psy3469 26 VGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIA---GYVIQGKPTQAAWRVVFVAAAVVY 101 (154)
Q Consensus 26 ~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~---G~i~~~~~~~~~~~~~F~~~~~~~ 101 (154)
++...+...+.+...+....++.|..| ++|+.+.|+.+....+|.+++|.+. +.+.+ ..+|++.|++.+...
T Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~----~~~w~~~f~~~~~~~ 206 (481)
T TIGR00879 131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN----TLGWRIPLGLQLIPA 206 (481)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC----CccHHHHHHHHHHHH
Confidence 333333334445555667778899876 7799999999999999999999998 66555 378999999966555
Q ss_pred HHHHHHHHHhccC
Q psy3469 102 LFSSTFYIFAASG 114 (154)
Q Consensus 102 ~i~~~~~~~~~~~ 114 (154)
++..+. .++.++
T Consensus 207 ~~~~~~-~~~l~~ 218 (481)
T TIGR00879 207 GLLFLG-LFFLPE 218 (481)
T ss_pred HHHHHH-HhcCCC
Confidence 555443 333443
No 90
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.20 E-value=6.9e-06 Score=64.79 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=54.4
Q ss_pred HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHH
Q psy3469 36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSS 105 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~ 105 (154)
.+...+......+|..| +++|++.|+.+....+|..++|.+.|++.+. .+|+..|.+.+++.+++.
T Consensus 309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 309 WGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE----IGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh----hchhhHHHHHHHHHHHhc
Confidence 34434555667888776 7799999999999999999999999999884 679999999888777654
No 91
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.19 E-value=2.2e-05 Score=62.29 Aligned_cols=75 Identities=17% Similarity=0.321 Sum_probs=49.5
Q ss_pred hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC----c--ccccchHHHH-HHHHHHHHHHHHHHHHhc
Q psy3469 41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG----K--PTQAAWRVVF-VAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~----~--~~~~~~~~~F-~~~~~~~~i~~~~~~~~~ 112 (154)
....+.+.|..| ++|+.+.++...+.++|..+++.+.+.+... . ....+|++.| +..+++.++..++..++.
T Consensus 109 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 188 (366)
T TIGR00886 109 ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVG 188 (366)
T ss_pred HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhc
Confidence 445667888776 6799999999988888888887777665531 0 0124799999 444555555555444544
Q ss_pred cCC
Q psy3469 113 SGD 115 (154)
Q Consensus 113 ~~~ 115 (154)
+++
T Consensus 189 ~~~ 191 (366)
T TIGR00886 189 ADT 191 (366)
T ss_pred ccC
Confidence 443
No 92
>KOG2533|consensus
Probab=98.19 E-value=2.8e-06 Score=71.90 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhcccC-cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCc--ccccchHHHHHHHH
Q psy3469 22 PYLTVGILTIGLGFNGAVYSGFKVNHLDIS-PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGK--PTQAAWRVVFVAAA 98 (154)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~--~~~~~~~~~F~~~~ 98 (154)
.+..+++-.+...+.+...|+...++.... ++++|...|+++...++|+++++++...+.... ....+|++.|++.+
T Consensus 134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G 213 (495)
T KOG2533|consen 134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEG 213 (495)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHH
Confidence 333333344444445555666666777765 478999999999999999999999988864321 12478999999999
Q ss_pred HHHHHHHHHHHHhccCCccCC
Q psy3469 99 VVYLFSSTFYIFAASGDRQPW 119 (154)
Q Consensus 99 ~~~~i~~~~~~~~~~~~~q~w 119 (154)
++.++..++.+++.+.+|.+-
T Consensus 214 ~i~~~~gi~~f~~lp~~P~~~ 234 (495)
T KOG2533|consen 214 VITLVLGIVVFFFLPDNPSKA 234 (495)
T ss_pred HHHHHHHheEEEEecCChhhc
Confidence 999999888878877776533
No 93
>KOG3764|consensus
Probab=98.19 E-value=6e-06 Score=67.87 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=77.5
Q ss_pred ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhh----hhhhhhcccCcc--hHHHHHHHHHHHHHHHHhHhhhh
Q psy3469 3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYS----GFKVNHLDISPR--FAGILMSFTNCLANLAGLLAPII 76 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----~~~~~~~d~~p~--~~g~~~g~~~~~~~lg~~i~P~i 76 (154)
+|+.++....+++++.. +.+ .+.++..++|...+ ...++++|..|+ +||.+.|+.-.+-.+|-.++|..
T Consensus 141 ~Gl~vmf~sTilFafg~-sy~----~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpf 215 (464)
T KOG3764|consen 141 AGLFVMFLSTILFAFGN-SYP----MLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPF 215 (464)
T ss_pred HHHHHHHHHHHHHHHcc-hhH----HHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCc
Confidence 46666666667777654 444 33444455544433 344588898873 48999999999999999999999
Q ss_pred hhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 77 AGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 77 ~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
+|.+.+. .|++..|+++++++++-..+-++..+..
T Consensus 216 GGilYe~----~Gk~aPFlVL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 216 GGILYEF----AGKSAPFLVLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred ccchHhh----cCCcCcHHHHHHHHHHHHHHHHheeCcc
Confidence 9999995 8899999999999998877766665443
No 94
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.18 E-value=1.3e-05 Score=67.07 Aligned_cols=110 Identities=11% Similarity=0.105 Sum_probs=65.3
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.+..+++.++.++.+ +.+..++...+...+.+. .......+.|..| ++||.+.|+.+..+++|+.+++.+.+.+..
T Consensus 107 ~~~~~~~~~~~~~~~~-s~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~ 184 (476)
T PLN00028 107 LLMLTAPAVFCMSLVS-SATGFIAVRFFIGFSLAT-FVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFP 184 (476)
T ss_pred HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554 443322222221222222 1223345678776 679999999998888888888766655432
Q ss_pred ----C-cccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 83 ----G-KPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 83 ----~-~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
. .....+||+.|++.+++.++..+...++.++.
T Consensus 185 ~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~ 222 (476)
T PLN00028 185 LIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDL 222 (476)
T ss_pred HHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 1 00124799999999988887776666665443
No 95
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.18 E-value=3.9e-05 Score=61.16 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=51.1
Q ss_pred HhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469 37 GAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST 106 (154)
Q Consensus 37 g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~ 106 (154)
+...+.......|..|++|+.+.|+.+....+|..++|.+.+.+.+. ...+|+..|.+.+.+.++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~--~~~~w~~~f~~~~~~~~~~~~ 169 (355)
T TIGR00896 102 AIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQH--SGGHWQQALAWWALPALLALL 169 (355)
T ss_pred HHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHH
Confidence 33334455566777788899999999999999999999999998874 112499999887766555443
No 96
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.17 E-value=2.1e-05 Score=63.98 Aligned_cols=81 Identities=20% Similarity=0.205 Sum_probs=61.0
Q ss_pred HhhhhhhhhhhcccC-c-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469 37 GAVYSGFKVNHLDIS-P-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASG 114 (154)
Q Consensus 37 g~~~~~~~~~~~d~~-p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~ 114 (154)
+...+.......+.. | +++|++.|+.+.++++++.++|.+.|++.|. .++|+..|.+.+.+.+++.+..+++.++
T Consensus 307 g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 307 GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSI---SGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 333444444555654 4 5699999999999999999999999999995 4679999999988888887776666654
Q ss_pred Cc-cCCC
Q psy3469 115 DR-QPWD 120 (154)
Q Consensus 115 ~~-q~w~ 120 (154)
++ ++|.
T Consensus 384 ~~~~~~~ 390 (393)
T PRK09705 384 RFPQLWV 390 (393)
T ss_pred cccchhc
Confidence 43 3443
No 97
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.16 E-value=1.1e-05 Score=67.59 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=62.5
Q ss_pred ccchhHHHHHHHHhhcCCChhH--------HHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHh
Q psy3469 3 LGQYGPAVCLVAASYTGCDPYL--------TVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLA 73 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~ 73 (154)
+++++.+++.++.++.+ +... .+++-.+...+.+...+...+++.|..| ++||...++......+|..++
T Consensus 92 ~~~~l~~i~~~~~a~~~-~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg 170 (490)
T PRK10642 92 ITIVIMSISTFCIGLIP-SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLG 170 (490)
T ss_pred HHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 35556666667777765 4321 1222223333344445566778899887 779999999988888888888
Q ss_pred hhhhhhccc----CcccccchHHHHHHHHHHHHH
Q psy3469 74 PIIAGYVIQ----GKPTQAAWRVVFVAAAVVYLF 103 (154)
Q Consensus 74 P~i~G~i~~----~~~~~~~~~~~F~~~~~~~~i 103 (154)
+.+...+.. ..-...+||+.|++.+.+.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 171 AGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred HHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 766544321 100136899999987655444
No 98
>PRK03699 putative transporter; Provisional
Probab=98.14 E-value=1.3e-05 Score=65.12 Aligned_cols=73 Identities=11% Similarity=0.172 Sum_probs=56.6
Q ss_pred HHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 36 NGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.+...+...+...+..|++++...|....++.+|..++|.+.|++.+. .+++..|+..+++++++.+..+.+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 308 SSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAH----FGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH----hCchhhhhhhHHHHHHHHHHHHHHH
Confidence 343445555666777777778889999999999999999999999984 6788999888888877765544443
No 99
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.14 E-value=1.5e-05 Score=64.38 Aligned_cols=66 Identities=5% Similarity=-0.087 Sum_probs=49.0
Q ss_pred HHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469 36 NGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST 106 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~ 106 (154)
.+...+...+...|. .++++.+.|..+..+.+|..++|.+.|++.+. .+|+..|++.+...++..+
T Consensus 108 ~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~----~g~~~~f~~~~~~~~~~~~ 173 (382)
T PRK11128 108 FSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW----FGEQAILWILTAGVASMLL 173 (382)
T ss_pred HcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH----cChhHHHHHHHHHHHHHHH
Confidence 333344444455554 45678888889999999999999999999984 6899999988765555443
No 100
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.11 E-value=3.1e-05 Score=64.19 Aligned_cols=67 Identities=24% Similarity=0.443 Sum_probs=54.7
Q ss_pred hhhcccCc-chHHHHHHHHHHHHHHHHhH-hhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 45 VNHLDISP-RFAGILMSFTNCLANLAGLL-APIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 45 ~~~~d~~p-~~~g~~~g~~~~~~~lg~~i-~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
....|..| +.+|++.|+.++.+++|+.+ +|.+.|++.|. .+|+..|++++.+.+++.+....+.+.+
T Consensus 370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~----~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 438 (452)
T PRK11273 370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF----FGWDGGFMVMIGGSILAVILLIVVMIGE 438 (452)
T ss_pred HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45568777 67999999999999998765 79999999985 6799999999998888877766665433
No 101
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.10 E-value=2.6e-05 Score=71.36 Aligned_cols=84 Identities=11% Similarity=-0.126 Sum_probs=62.4
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHH
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAV 99 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~ 99 (154)
+.+..+++..+...+.++..+...+++.|+.| ++++.++|+.++..++|.+++|.++|++.+. .+|+..|+....
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~----~~~~~~~~~~~~ 182 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS----GNFVILVALLMG 182 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc----cccHHHHHHHHH
Confidence 44444444444444455556778889999876 7799999999999999999999999999884 789999855545
Q ss_pred HHHHHHHHH
Q psy3469 100 VYLFSSTFY 108 (154)
Q Consensus 100 ~~~i~~~~~ 108 (154)
+.+++.++.
T Consensus 183 ~~~~~~~~~ 191 (1140)
T PRK06814 183 IAVLGWLAS 191 (1140)
T ss_pred HHHHHHHHH
Confidence 445444433
No 102
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.07 E-value=3.8e-05 Score=63.23 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=47.9
Q ss_pred HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc----ccccchHHHHHHHHHHHHHH
Q psy3469 36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK----PTQAAWRVVFVAAAVVYLFS 104 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~----~~~~~~~~~F~~~~~~~~i~ 104 (154)
.|...+...+++.|..| ++||.+.++.+.....|.++++.+.+.+.... -...+||..|++.+...++.
T Consensus 138 ~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 138 VGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred hhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 34445666788899876 77999999988888888888877655443210 01368999999876655544
No 103
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.07 E-value=5.4e-06 Score=68.94 Aligned_cols=96 Identities=16% Similarity=0.050 Sum_probs=67.5
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHH
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAV 99 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~ 99 (154)
+.+..+++..+...+.+...+...+.+.|..| ++||.+.|+.+....+|.++++.+..++.+.. -..+|+..|.+.+.
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~-~~~~~~~~f~~~g~ 199 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF-FDGHVIGMFIFPSI 199 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh-ccCcchhHHHHHHH
Confidence 33333443444444455555666778889876 67999999999999999999999987776521 01369999998888
Q ss_pred HHHHHHHHHHHhccCCcc
Q psy3469 100 VYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 100 ~~~i~~~~~~~~~~~~~q 117 (154)
+.++..++.+++.+++++
T Consensus 200 ~~~~~~i~~~~~~~~~p~ 217 (467)
T PRK09556 200 IALIIGFIGLRYGSDSPE 217 (467)
T ss_pred HHHHHHHHHHHhCCCChh
Confidence 877766666666655554
No 104
>KOG0255|consensus
Probab=98.06 E-value=2e-05 Score=66.40 Aligned_cols=97 Identities=12% Similarity=0.151 Sum_probs=75.4
Q ss_pred ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccC-cchHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDIS-PRFAGILMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
.++++..++-+..++.+ +.+..+++-.+..++.+......+.+.+|+. |++|+.+..+ ......++.++|.+.+++.
T Consensus 153 ~~~~~~~i~~~~~a~a~-~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~ 230 (521)
T KOG0255|consen 153 VSLLLFIIFGILTAFAP-NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT 230 (521)
T ss_pred HHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 35556666666777765 6665555556655555555677888999965 6899999999 8899999999999999998
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHH
Q psy3469 82 QGKPTQAAWRVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 82 ~~~~~~~~~~~~F~~~~~~~~i~~~~ 107 (154)
. +||+.+++.....++..+.
T Consensus 231 ~------~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 231 R------DWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred h------hHHHHHHHHHHHHHHHHHH
Confidence 6 5999999988888777666
No 105
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.05 E-value=1.9e-05 Score=65.30 Aligned_cols=73 Identities=8% Similarity=-0.018 Sum_probs=53.1
Q ss_pred hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC--cccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG--KPTQAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~--~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
+..+..++|..| ++||++.|+.+.+++++++++|.+.+.+.+. .....+|+..|++.+++.+++.+...++.+
T Consensus 383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 383 PVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred chhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 456788999887 6799999999999999999997666554410 001256778888888777777666555544
No 106
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.04 E-value=0.00012 Score=60.36 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc---------------
Q psy3469 22 PYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP--------------- 85 (154)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~--------------- 85 (154)
.+..+....+...+.+...+...+.+.+..| ++++...++.+.+.++|..++|.+.+.+.....
T Consensus 94 ~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~ 173 (410)
T TIGR00885 94 YTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEE 173 (410)
T ss_pred HHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHH
Confidence 3333333344444455555556667777776 679999999999999999999999998753210
Q ss_pred -------cccchHHHHHHHHHHHHHHHHHHH
Q psy3469 86 -------TQAAWRVVFVAAAVVYLFSSTFYI 109 (154)
Q Consensus 86 -------~~~~~~~~F~~~~~~~~i~~~~~~ 109 (154)
...+|+..|++.+.+.++..+.+.
T Consensus 174 ~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~ 204 (410)
T TIGR00885 174 LSAIKHSDLASVQTPYMIIGAVVLAVALLIM 204 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124699999988887776655443
No 107
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.03 E-value=1.1e-05 Score=66.74 Aligned_cols=79 Identities=16% Similarity=0.295 Sum_probs=56.6
Q ss_pred HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc----cccchHHHHHHHHHHHHHHHHHHHH
Q psy3469 36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP----TQAAWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~----~~~~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
.+...+...+++.|..| ++||.+.|+.+....+|.++++.+.+.+..... ...+||+.|++.+...++..+. .+
T Consensus 134 ~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~ 212 (479)
T PRK10077 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LY 212 (479)
T ss_pred HhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HH
Confidence 44445566778899887 779999999999999999999887766543110 1368999999887777776544 34
Q ss_pred hccCC
Q psy3469 111 AASGD 115 (154)
Q Consensus 111 ~~~~~ 115 (154)
+.+++
T Consensus 213 ~l~~s 217 (479)
T PRK10077 213 FVPET 217 (479)
T ss_pred cCCCC
Confidence 44444
No 108
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.02 E-value=5.2e-05 Score=61.82 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=55.0
Q ss_pred HHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHH
Q psy3469 33 LGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 33 ~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~ 107 (154)
..+.++..+...+.+.|+.| ++|+.+.|+.+....++..++|.++|++.+. .|+..|.+.+.+.+++.+.
T Consensus 99 G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-----~~~~~~~i~~~~~~~~~~~ 169 (393)
T PRK11195 99 GIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-----HAEAALAVCALIYLLAALF 169 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 33345556777888999887 6799999999999999999999999999883 3778887776665555443
No 109
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.00 E-value=6.6e-05 Score=59.65 Aligned_cols=91 Identities=15% Similarity=0.140 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCccc------------cc
Q psy3469 22 PYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPT------------QA 88 (154)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~------------~~ 88 (154)
....++.+.+...++++..+....++.++.| ++++...++...+..+|..++|.+.+.+...... ..
T Consensus 10 ~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (310)
T TIGR01272 10 YVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAA 89 (310)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHH
Confidence 3344444555555566667788889999876 6799999999999999999999999987742100 14
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 89 AWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 89 ~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
+|+..|++.+.+.++..+.+.+..
T Consensus 90 ~~~~~yl~ia~~~~~~~i~~~~~~ 113 (310)
T TIGR01272 90 KVHTPYLLLAGALAVLAIIFAFLP 113 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 689999988887777666555553
No 110
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.96 E-value=4.2e-05 Score=61.87 Aligned_cols=78 Identities=10% Similarity=-0.034 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV 100 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~ 100 (154)
+.+..++...+...+.+...+...+...+. +++++...|....++++|.+++|++.|++.+. .+|+..|++.+.+
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~----~g~~~~f~~~~~~ 167 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANTW-QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM----FDEQNILAILTAG 167 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHHH-HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH----cChhHHHHHHHHH
Confidence 444433333323333333344444444433 46789999999999999999999999999984 6899999887655
Q ss_pred HHH
Q psy3469 101 YLF 103 (154)
Q Consensus 101 ~~i 103 (154)
.++
T Consensus 168 ~~~ 170 (382)
T TIGR00902 168 LAF 170 (382)
T ss_pred HHH
Confidence 333
No 111
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.96 E-value=0.00017 Score=58.80 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=44.8
Q ss_pred hhhhhhcccC-cchHHHHHHHHHHHHHHHH-hHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 42 GFKVNHLDIS-PRFAGILMSFTNCLANLAG-LLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 42 ~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~-~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.....+.+.. +++|+.+.|+.+...++|. .++|.+.|++.+. .+|+..++......+++.++..++.
T Consensus 125 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 193 (402)
T TIGR00897 125 SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA----FGEMNTLWSALAFVLTGGVIALFSN 193 (402)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444566655 4889999999999999996 6899999998874 5655555544444334433333333
No 112
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.94 E-value=5.4e-05 Score=65.89 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhh----hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCccc-----------------
Q psy3469 29 LTIGLGFNGAVY----SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPT----------------- 86 (154)
Q Consensus 29 l~~~~~~~g~~~----~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~----------------- 86 (154)
+.++.++.|+.. +...+++.|..| ++++.+.|+.+....+|..++|.++|++.+...+
T Consensus 175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dpr 254 (633)
T TIGR00805 175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPR 254 (633)
T ss_pred hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCcc
Confidence 344455555543 444568888776 7799999999999999999999999988753210
Q ss_pred -ccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469 87 -QAAWRVVFVAAAVVYLFSSTFYIFAASG 114 (154)
Q Consensus 87 -~~~~~~~F~~~~~~~~i~~~~~~~~~~~ 114 (154)
.++|+..|++.+++.++..+.++++.++
T Consensus 255 WiGaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 255 WIGAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 1247888999888888877665554433
No 113
>PRK09952 shikimate transporter; Provisional
Probab=97.94 E-value=6.1e-05 Score=62.25 Aligned_cols=99 Identities=12% Similarity=0.096 Sum_probs=61.6
Q ss_pred cchhHHHHHHHHhhcCCChhH----HHHHHHHHHHHHHh----hhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhh
Q psy3469 4 GQYGPAVCLVAASYTGCDPYL----TVGILTIGLGFNGA----VYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAP 74 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~----~~~~l~~~~~~~g~----~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P 74 (154)
++++.+++.++.++.+ +... ....+.+..+..|. ..+...+++.|..| ++||...+..+....+|..+++
T Consensus 100 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~ 178 (438)
T PRK09952 100 TVWMMGIATALIGLLP-SFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST 178 (438)
T ss_pred HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4455555566666665 4321 11122333333333 33445568889877 7799999999999899999988
Q ss_pred hhhhhcccCcc----cccchHHHHHHHHHHHHH
Q psy3469 75 IIAGYVIQGKP----TQAAWRVVFVAAAVVYLF 103 (154)
Q Consensus 75 ~i~G~i~~~~~----~~~~~~~~F~~~~~~~~i 103 (154)
.+.+.+..... ...+||..|++.+...++
T Consensus 179 ~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 179 GLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 87776543100 136899999987665443
No 114
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.94 E-value=0.0001 Score=59.52 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469 53 RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 53 ~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q 117 (154)
+.++.+. .+...++|.+++|.+.|++.|. +++|+..|.+++.+.++.......+.+.++|
T Consensus 322 ~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (382)
T PRK10091 322 ELLGAAG--GQIAFNLGSAIGAYCGGMMLTL---GLAYNYVALPAALLSFAAMSSLLLYGRYKRQ 381 (382)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHHhHHHHHc---ccCcchHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4455543 4677899999999999999984 4789999999988888777766666665554
No 115
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.92 E-value=5.3e-05 Score=62.16 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=47.0
Q ss_pred hhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHH
Q psy3469 42 GFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYL 102 (154)
Q Consensus 42 ~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~ 102 (154)
..+....|..| ++||++.|+.+.++++|++++|.+.|.+.+. .++|+..|++++++.+
T Consensus 353 ~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~---~g~~~~~~~~~~~~~~ 411 (412)
T TIGR02332 353 IFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDA---TGSFNSGLWFVAALLV 411 (412)
T ss_pred HHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccccc---CCCCchhHHHHHHHHh
Confidence 34455566555 7899999999999999999999999999985 3569999987766543
No 116
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.89 E-value=8.5e-05 Score=62.41 Aligned_cols=73 Identities=10% Similarity=0.068 Sum_probs=55.3
Q ss_pred hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCccc------ccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPT------QAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~------~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
+..+....|+.| +.|+++.|+.+.++.++++++|.+.|++.+..+. ..++...|++.+++.+++.+.+ ++.+
T Consensus 411 ~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lp 489 (502)
T TIGR00887 411 ATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIP 489 (502)
T ss_pred chhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEec
Confidence 456777889988 6699999999999999999999999999874211 1235667888888888776654 4444
Q ss_pred C
Q psy3469 114 G 114 (154)
Q Consensus 114 ~ 114 (154)
+
T Consensus 490 E 490 (502)
T TIGR00887 490 E 490 (502)
T ss_pred c
Confidence 3
No 117
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.89 E-value=6e-05 Score=62.11 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=81.7
Q ss_pred hhHHHHHHHHhhcC------CChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhh
Q psy3469 6 YGPAVCLVAASYTG------CDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGY 79 (154)
Q Consensus 6 ~~~ai~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~ 79 (154)
.+++++..++++.. .+....+..+.....+.|...+..+..+..+.|++.|.+.|+...++.+|++.-|...|.
T Consensus 292 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~ 371 (417)
T COG2223 292 VGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGV 371 (417)
T ss_pred HHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHH
Confidence 34455555555442 123344444455555677777888889999999999999999999999999999999999
Q ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 80 VIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 80 i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
..+. +.+|...|++...+.+++.+.......+++
T Consensus 372 ~~~~---tg~~~~~f~~~~~~~~~a~v~~~~~y~r~~ 405 (417)
T COG2223 372 SLDL---TGSYTGAFMLLLAFYLVALVLTWALYARRR 405 (417)
T ss_pred HHHh---cccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9985 567999999999999998886666654443
No 118
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.88 E-value=0.00014 Score=61.45 Aligned_cols=88 Identities=15% Similarity=0.224 Sum_probs=69.6
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHH
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAV 99 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~ 99 (154)
+.+...++-.+...++|..++...++..++.| ++.+...|+++..+...++++|.+.|.+.+. +++.|+.|.....
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~---tg~~r~g~~~l~~ 455 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDA---TGSQRYGFLFLLV 455 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCchhHHHHHHH
Confidence 34433333334444567777888889999887 6789999999999999999999999999995 5778999999999
Q ss_pred HHHHHHHHHHHh
Q psy3469 100 VYLFSSTFYIFA 111 (154)
Q Consensus 100 ~~~i~~~~~~~~ 111 (154)
+++++.++....
T Consensus 456 lf~~gl~ll~~v 467 (477)
T PF11700_consen 456 LFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHhhc
Confidence 988888876443
No 119
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.88 E-value=0.00019 Score=57.88 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=53.7
Q ss_pred hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 40 YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 40 ~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
.+...+...|..| ++++...+..+...++|++++|.+.|++.|. .+|++.|.+.+.+.+++.+..++.
T Consensus 303 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~----~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 303 YPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN----YSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCccHHHHHHHHHHHHHHHHHHhc
Confidence 4556666677666 5678888888999999999999999999984 678999999888887766544433
No 120
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.88 E-value=0.00014 Score=57.58 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=49.7
Q ss_pred hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc----cccchHHHHHHHHHHHHHHHHH
Q psy3469 40 YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP----TQAAWRVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 40 ~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~----~~~~~~~~F~~~~~~~~i~~~~ 107 (154)
.+...+.+.|..| ++|+...++.+....+|.+++|.+.+.+....+ ...+|+..|++.+.+.+++...
T Consensus 114 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 114 WGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred ccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 3445667888776 779999999999999999999988776542100 1367999999877666655443
No 121
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.88 E-value=0.00022 Score=58.78 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=77.0
Q ss_pred hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc
Q psy3469 6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP 85 (154)
Q Consensus 6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~ 85 (154)
+..++.++.+.+...+.+..+..+.+..+.........+.-..+..|+.++.+.++....-|+|..+|..++|.+.|+
T Consensus 284 ~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-- 361 (394)
T COG2814 284 LLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA-- 361 (394)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 445555566666653444444444443333333333445555566679999999999999999999999999999994
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 86 TQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 86 ~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
.+|....++.+.+.+++.+..+...+.++
T Consensus 362 --~g~~~~~~~~a~l~~~a~~~~~~~~~~~~ 390 (394)
T COG2814 362 --LGYAATGWVGAALLLLALLLALLSARKDR 390 (394)
T ss_pred --hchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88999999999999999887777665443
No 122
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.87 E-value=0.00026 Score=57.71 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=54.6
Q ss_pred hhhhhhhhcccC--cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCc---ccccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469 40 YSGFKVNHLDIS--PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGK---PTQAAWRVVFVAAAVVYLFSSTFYIFAASG 114 (154)
Q Consensus 40 ~~~~~~~~~d~~--p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~---~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~ 114 (154)
..++.+...|+. +++|+...++.+..+.+|+.+++.+.+.+.... ....+|+..|.+.+++.++..+...++.++
T Consensus 117 ~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e 196 (437)
T TIGR00792 117 NIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKE 196 (437)
T ss_pred cccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEe
Confidence 345667777865 367999999999999999888877766655311 123679999999988888777665555544
Q ss_pred C
Q psy3469 115 D 115 (154)
Q Consensus 115 ~ 115 (154)
+
T Consensus 197 ~ 197 (437)
T TIGR00792 197 R 197 (437)
T ss_pred c
Confidence 3
No 123
>PRK15075 citrate-proton symporter; Provisional
Probab=97.86 E-value=0.00012 Score=60.33 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=44.5
Q ss_pred hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc----ccccchHHHHHHHHH
Q psy3469 40 YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK----PTQAAWRVVFVAAAV 99 (154)
Q Consensus 40 ~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~----~~~~~~~~~F~~~~~ 99 (154)
.+....++.|..| ++||.+.++.+...++|..++|.+.+.+.... ....+||+.|++...
T Consensus 135 ~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 135 LGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 4455678889887 77999999999999998888888877663210 013689999987543
No 124
>KOG2504|consensus
Probab=97.85 E-value=5.4e-05 Score=64.34 Aligned_cols=106 Identities=11% Similarity=0.039 Sum_probs=81.1
Q ss_pred ccchhHHHHHHHHhhcCCChhHHHHHHHHH-HHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 3 LGQYGPAVCLVAASYTGCDPYLTVGILTIG-LGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
+|.++.++++++..+.+ +.+..++...+. ..+.++.+....+.+..+.+++|+.++|+......+|.++-|.+.-++.
T Consensus 116 ~G~~v~~~g~~lssF~~-~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~ 194 (509)
T KOG2504|consen 116 AGGLVAALGLLLSSFAT-SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLL 194 (509)
T ss_pred HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence 46667777788888775 655444433333 3335665666666777788899999999999999999999999999999
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
+. .+|++.+++.+.+.+-..+.....++
T Consensus 195 ~~----~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 195 SK----YGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HH----hCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 94 88999999999998777776666655
No 125
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.85 E-value=5.5e-05 Score=62.38 Aligned_cols=68 Identities=24% Similarity=0.454 Sum_probs=56.5
Q ss_pred hhhcccCc-chHHHHHHHHHHHHHHHH-hHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 45 VNHLDISP-RFAGILMSFTNCLANLAG-LLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 45 ~~~~d~~p-~~~g~~~g~~~~~~~lg~-~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
....|..| +.+|++.|+.+.++++++ +++|.+.|++.|. .+|+.+|++++++.+++.+..+++.++|+
T Consensus 368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF----FGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh----ccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567777 679999999999999875 6899999999984 57999999999988888888877776653
No 126
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.82 E-value=0.00033 Score=59.20 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCc-ch--HHHHHHHHHHHHHHHHhHhhhhhhhcc--cC---ccc------ccchHHHH
Q psy3469 29 LTIGLGFNGAVYSGFKVNHLDISP-RF--AGILMSFTNCLANLAGLLAPIIAGYVI--QG---KPT------QAAWRVVF 94 (154)
Q Consensus 29 l~~~~~~~g~~~~~~~~~~~d~~p-~~--~g~~~g~~~~~~~lg~~i~P~i~G~i~--~~---~~~------~~~~~~~F 94 (154)
+.+..+......++..+++.|+.| ++ ++.+.++.+...++|+.+++.+.|+.. +. .++ ..+++..|
T Consensus 121 ~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F 200 (477)
T TIGR01301 121 FWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCF 200 (477)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHH
Confidence 333344555566788899999887 33 378999999999999999999998752 10 000 13789999
Q ss_pred HHHHHHHHHHHHHHHHhccCCc
Q psy3469 95 VAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 95 ~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
++.+++++++.+...+..++++
T Consensus 201 ~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 201 LIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHeeeeeccC
Confidence 9998888888887777776653
No 127
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.82 E-value=0.00029 Score=59.54 Aligned_cols=106 Identities=9% Similarity=0.088 Sum_probs=66.4
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+++.-+++.++.++.. +.....+.-.+...+.+... ..+.++....| ++|++++|+.+....+|.+++|++.+++..
T Consensus 98 ~~l~Wsl~t~L~~fa~-Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s 175 (511)
T TIGR00806 98 QALSFVCVWLLLLLGT-SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT 175 (511)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555543 33322333333333344444 66667777776 789999999999999999999999999543
Q ss_pred CcccccchHH---HHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 83 GKPTQAAWRV---VFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 83 ~~~~~~~~~~---~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
.+|+. ..++..+...++.+..+++-+.++
T Consensus 176 -----~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 176 -----LGWISYSTLNIISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred -----cCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 34554 556666666666666655544443
No 128
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.80 E-value=0.00028 Score=64.45 Aligned_cols=62 Identities=5% Similarity=-0.089 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.+..+++..+...+.++..+...+++.|+.| ++|+.+.|+.+....+|.+++|.++|++.+
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433444444444455555677789999876 779999999999999999999999999976
No 129
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.78 E-value=0.00028 Score=61.08 Aligned_cols=101 Identities=11% Similarity=0.128 Sum_probs=63.0
Q ss_pred hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469 6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK 84 (154)
Q Consensus 6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~ 84 (154)
++..+..++.+..+ +....+...++.....|.. ......++|+.| +.|+...++.....-.....+|.+...+..
T Consensus 116 ~l~vvG~Iv~atA~-~~~~~iag~~l~GvgaG~~-~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~-- 191 (599)
T PF06609_consen 116 LLGVVGSIVCATAQ-NMNTFIAGMVLYGVGAGVQ-ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA-- 191 (599)
T ss_pred HHHHhHHHHhhcCC-cHHHHHHHHHHHHHhhHHH-HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc--
Confidence 34444444455443 4433444444443333332 234556889888 679888877766555555567777766654
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 85 PTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 85 ~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
+.+|||.|++.++...++.+...++-
T Consensus 192 --~~~WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 192 --HSGWRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999998888876665554
No 130
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.78 E-value=0.00034 Score=58.70 Aligned_cols=106 Identities=15% Similarity=0.085 Sum_probs=76.6
Q ss_pred ccchhHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHh
Q psy3469 3 LGQYGPAVCLVAASYT--------GCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLA 73 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~ 73 (154)
+|+++.++++..+.+. +.+.++.+....+....-.+..+..++...+..| +.||...|+......+|..++
T Consensus 354 ~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~ 433 (475)
T TIGR00924 354 LGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLG 433 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777666666531 1244444444444444445556788889999998 569999999999999999999
Q ss_pred hhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 74 PIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 74 P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
+.+.....+. .+|...|...+.+.++..++++++.
T Consensus 434 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 434 GYLATFGAVP----QGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHHHHHhcc----cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 9998877663 5688888888888887777665544
No 131
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.76 E-value=0.00015 Score=59.00 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=37.4
Q ss_pred hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
+..+..+.|..| +++|++.|+.+..+.+++.++|.+.|++.+.
T Consensus 340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~ 383 (426)
T PRK12307 340 GLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT 383 (426)
T ss_pred HHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence 345567788887 6799999999999999999999999999884
No 132
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.75 E-value=0.00039 Score=56.24 Aligned_cols=99 Identities=9% Similarity=-0.105 Sum_probs=65.3
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHH-HHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNC-LANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~-~~~lg~~i~P~i~G~i~~ 82 (154)
+.+..++.....++.+ +.+..+....+-....+...+.....+.+..++++++..++++. ...+|..++|.+.|++.|
T Consensus 276 ~~~~~~~~~~~~~~~~-~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 276 SAIACVGRWAIIGAIE-AFPLIFLLQILHCGTFAVCHLAAMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred HHHHHHHHHHHHHhHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666554 54433333333333345545555667777733678999999874 567999999999999999
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHH
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFY 108 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~ 108 (154)
. .++ ..|..++.+.+++.++.
T Consensus 355 ~----~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 355 T----LGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred h----ccH-HHHHHHHHHHHHHHHHH
Confidence 5 454 67888888887765543
No 133
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.73 E-value=0.00037 Score=57.27 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=60.2
Q ss_pred HHhhhhhhhhhhcccCc--chHHHHHHHHHHHHHHHHhHhhhhhhhcccCccc--c-cchHHHHHHHHHHHHHHHHHHHH
Q psy3469 36 NGAVYSGFKVNHLDISP--RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPT--Q-AAWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p--~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~--~-~~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
..+...++.+...|+.+ ++|....+..+.+..+|.++...+.+.+.+..+. . .+|+..+.+.+++.+++.++..+
T Consensus 117 ~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~ 196 (428)
T PF13347_consen 117 YTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFF 196 (428)
T ss_pred hhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhh
Confidence 34444567788899875 5699999999999999998777777777653221 1 27999999999998888887777
Q ss_pred hccC
Q psy3469 111 AASG 114 (154)
Q Consensus 111 ~~~~ 114 (154)
..++
T Consensus 197 ~~ke 200 (428)
T PF13347_consen 197 FVKE 200 (428)
T ss_pred eeee
Confidence 7666
No 134
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.73 E-value=0.00098 Score=53.79 Aligned_cols=79 Identities=9% Similarity=-0.068 Sum_probs=49.3
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.+..++......+.+ +.+..++...+.....+...+...+...|..| ++|+.+.|..+...++|..++|.+.+.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 77 ASLIFAAGCAGLGLMV-GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344444445555544 54433333333333333333434445556554 779999999999999999999999999977
Q ss_pred C
Q psy3469 83 G 83 (154)
Q Consensus 83 ~ 83 (154)
.
T Consensus 156 ~ 156 (381)
T PRK03633 156 E 156 (381)
T ss_pred c
Confidence 3
No 135
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.73 E-value=0.00033 Score=57.63 Aligned_cols=76 Identities=12% Similarity=0.023 Sum_probs=53.4
Q ss_pred HHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHH-HHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHH
Q psy3469 32 GLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANL-AGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYI 109 (154)
Q Consensus 32 ~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~l-g~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~ 109 (154)
..++.+...+..+...+|..| +.|+++.|+.+.++++ .+...|.+.+.+.+ ++.|...|++.+.+.+++.+..+
T Consensus 346 ~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~----~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 346 ALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS----IGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHHHH
Confidence 334444444556778899887 6799999999988875 35558888886633 24577777777777777766655
Q ss_pred Hh
Q psy3469 110 FA 111 (154)
Q Consensus 110 ~~ 111 (154)
++
T Consensus 422 ~l 423 (432)
T PRK10406 422 ML 423 (432)
T ss_pred Hh
Confidence 54
No 136
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.71 E-value=0.00033 Score=59.80 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469 22 PYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV 100 (154)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~ 100 (154)
.+..+++..+..++..+..+...+.+.|+.| ++...+.++.+...+++.++||.++|.++.. .|....|.+.+..
T Consensus 103 ~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~----~G~~~~f~inals 178 (524)
T PF05977_consen 103 PWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF----FGAAAAFLINALS 178 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH----HHHHHHHHHHHHH
Confidence 3433333333344455556778889999887 6789999999999999999999999999884 6778889988877
Q ss_pred HHHHHHHHH
Q psy3469 101 YLFSSTFYI 109 (154)
Q Consensus 101 ~~i~~~~~~ 109 (154)
.++..+...
T Consensus 179 fl~~i~~l~ 187 (524)
T PF05977_consen 179 FLISILALL 187 (524)
T ss_pred HHHHHHHHH
Confidence 776655443
No 137
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.00014 Score=59.91 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccc---hHHHHHHHHHH
Q psy3469 25 TVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAA---WRVVFVAAAVV 100 (154)
Q Consensus 25 ~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~---~~~~F~~~~~~ 100 (154)
.++.+.+..+..|..++...+.+...+| ++.|++.|+.. ++|+|..+.-.+.-.+... .+ |+.+..+-...
T Consensus 107 ~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~----~g~~~w~~~~~i~~~~ 181 (417)
T COG2223 107 QLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA----FGFLAWRNVAGIYVVA 181 (417)
T ss_pred HHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence 4445555555556666666777888777 67999999999 9999888777766666653 44 99999999999
Q ss_pred HHHHHHHHHHhccCCccCCCCCCC
Q psy3469 101 YLFSSTFYIFAASGDRQPWDNPNN 124 (154)
Q Consensus 101 ~~i~~~~~~~~~~~~~q~w~~~~~ 124 (154)
+++..+.+++..++.++....+++
T Consensus 182 l~v~~v~~~~~~~d~p~~r~~~~~ 205 (417)
T COG2223 182 LAIAAVLAWLGMNDVPEHRASVKP 205 (417)
T ss_pred HHHHHHHHHHHhCCChhhhccccc
Confidence 999888888888888775343333
No 138
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.66 E-value=0.00058 Score=55.69 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=52.0
Q ss_pred chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccC--------cchHHHHHHHHHHHHHHHHhHhhhh
Q psy3469 5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDIS--------PRFAGILMSFTNCLANLAGLLAPII 76 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~--------p~~~g~~~g~~~~~~~lg~~i~P~i 76 (154)
+++.++..+.+.+.+.+.+..+++..+..+..+...+..++.++|.. ++++|.+.|+.+++..+|..++|.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i 373 (437)
T TIGR00792 294 ILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFL 373 (437)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443313333344444444455555667788888764 3458999999999999999999999
Q ss_pred hhhcccC
Q psy3469 77 AGYVIQG 83 (154)
Q Consensus 77 ~G~i~~~ 83 (154)
.|++.+.
T Consensus 374 ~g~ll~~ 380 (437)
T TIGR00792 374 VGLILGI 380 (437)
T ss_pred HHHHHHH
Confidence 9999764
No 139
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.62 E-value=0.00021 Score=57.08 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=45.1
Q ss_pred hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHH
Q psy3469 40 YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAA 97 (154)
Q Consensus 40 ~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~ 97 (154)
.+..+..++|..| +++|++.|+.+.+.++++.++|.+.|++.|. .++|+..|...
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~---~g~~~~~~~~~ 401 (405)
T TIGR00891 346 WGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR---LDEYGTALASL 401 (405)
T ss_pred hhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh---ccccchhHHhh
Confidence 4556678888877 6799999999999999999999999999995 23377766653
No 140
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.60 E-value=0.00039 Score=56.36 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=48.2
Q ss_pred hhhcccCc-chHHHHHHH-HHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469 45 VNHLDISP-RFAGILMSF-TNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 45 ~~~~d~~p-~~~g~~~g~-~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
....+..| +.+++..+. .++...+|++++|.+.|++.|. .+|+..|.+.+++.++..+...+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~----~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS----IGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh----cccHHHHHHHHHHHHHHHHHHHH
Confidence 34455444 556776666 6789999999999999999994 67999999999888877765543
No 141
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.59 E-value=0.00044 Score=63.45 Aligned_cols=82 Identities=10% Similarity=-0.060 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469 22 PYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV 100 (154)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~ 100 (154)
.+..++...+...+.++......+.+++..| +++|++.|+.+++..++..+++++.|.+.+. ..++...|++++.+
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~---~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL---GFSIPWIILFIALA 410 (1140)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh---ccCHHHHHHHHHHH
Confidence 3333333333344445555667888899877 6799999999999999999999999999753 25667777666655
Q ss_pred HHHHHH
Q psy3469 101 YLFSST 106 (154)
Q Consensus 101 ~~i~~~ 106 (154)
.++..+
T Consensus 411 ~~~~~~ 416 (1140)
T PRK06814 411 NLIVAI 416 (1140)
T ss_pred HHHHHH
Confidence 444443
No 142
>PRK10504 putative transporter; Provisional
Probab=97.59 E-value=0.00077 Score=55.78 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=39.8
Q ss_pred HHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 34 GFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 34 ~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
.+.+...+.......+..| +.+|.+.|+.++...+|..++|.+.|.+.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 365 MVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred HHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566667777666 6799999999999999999999999998764
No 143
>KOG2615|consensus
Probab=97.59 E-value=0.00012 Score=60.04 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=54.2
Q ss_pred ccchhHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhc
Q psy3469 3 LGQYGPAVCLVAASYTGCDPYLTVGI-LTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYV 80 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i 80 (154)
+|.++.++.+.+.+... +. .+.++ -.+...+.| +.+...++++|+.+ ++|+.+++.++...++|-++||.|+|++
T Consensus 103 ~c~~~va~s~ll~~~S~-~F-~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyl 179 (451)
T KOG2615|consen 103 ACLIGVALSYLLWALSR-NF-AAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL 179 (451)
T ss_pred HHHHHHHHHHHHHHHHH-HH-HHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence 45556666666665543 33 22222 223333333 35778899999875 7899999999999999999999999999
Q ss_pred cc
Q psy3469 81 IQ 82 (154)
Q Consensus 81 ~~ 82 (154)
..
T Consensus 180 a~ 181 (451)
T KOG2615|consen 180 AQ 181 (451)
T ss_pred Hh
Confidence 87
No 144
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.57 E-value=0.00061 Score=62.27 Aligned_cols=100 Identities=16% Similarity=0.067 Sum_probs=63.4
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
++++.+++++++.+.. +.+..++.+.+..++.++..+..++.+++..| +.+|++.|+.+++.+++.++++.+.+.+..
T Consensus 305 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 305 GALGLALSLFLLPTAP-SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555443 44433343343444445555667788888877 679999999999999999988888777654
Q ss_pred CcccccchHHHHHHHHHHHHHHHHH
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~ 107 (154)
. ..++...|++.+.+.++..+.
T Consensus 384 ~---~~~~~~~~~~~~~~~~~~~~~ 405 (1146)
T PRK08633 384 L---GLSPAGLFYLIALVTLIGTLY 405 (1146)
T ss_pred h---ccCHHHHHHHHHHHHHHHHHH
Confidence 2 244556676666655544433
No 145
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.57 E-value=0.0013 Score=53.55 Aligned_cols=70 Identities=14% Similarity=0.311 Sum_probs=48.1
Q ss_pred HHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHH
Q psy3469 35 FNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFY 108 (154)
Q Consensus 35 ~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~ 108 (154)
+.++..+..++..+.+.+ +..++..++.+....+++++++.+.|.+.|. .||+..|...+.+.+++.+..
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~----~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 316 CGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEA----YGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hChHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433 2245556777777788888778899999985 789999999888888876654
No 146
>PRK11043 putative transporter; Provisional
Probab=97.57 E-value=0.0015 Score=52.92 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=40.3
Q ss_pred HHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 33 LGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 33 ~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
....+...+...+...+..|+++|++.|+.++.+..++..++.+.|.+.+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 307 AAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 333444455555566676788899999999999999999999999999873
No 147
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.56 E-value=0.0012 Score=53.86 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=51.9
Q ss_pred HHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469 35 FNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST 106 (154)
Q Consensus 35 ~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~ 106 (154)
+.+...+...+.+++..|++.+.+.+......++|..+||.+.|++.|. .+++..|+.++.+.++..+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~----~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 318 TFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDN----IGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cChhhHHHHHHHHHHHHHH
Confidence 3444445555567776787788888888889999999999999999984 6788888887776655544
No 148
>KOG0253|consensus
Probab=97.55 E-value=0.00016 Score=59.49 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=69.0
Q ss_pred ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
.+++..+++++.+.... +......++..+-++....+...|.+..|++| .-|++..|..+..+.+|+++.|.|. ...
T Consensus 416 l~l~~f~iflfll~~c~-~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~ 493 (528)
T KOG0253|consen 416 LSLILFGIFLFLLTTCK-TRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRA 493 (528)
T ss_pred HHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHh
Confidence 35566666666655433 44444556666777767778889999999999 5699999999999999999999998 333
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
+. +..-.+|+. +.+.+++.+...++
T Consensus 494 e~----s~sl~i~vy-~~~~ilagIavcff 518 (528)
T KOG0253|consen 494 EL----STSLPIFVY-GALFILAGIAVCFF 518 (528)
T ss_pred cc----ceeehHHHH-HHHHHHHHHHheee
Confidence 31 333344544 44444454444444
No 149
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.55 E-value=0.00086 Score=54.21 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=55.4
Q ss_pred HHHHhhhhhhhhhhccc-Cc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHH
Q psy3469 34 GFNGAVYSGFKVNHLDI-SP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 34 ~~~g~~~~~~~~~~~d~-~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~ 107 (154)
.+.+...+..++..++. .| +++|+..++.++..++|..++|.+.|++.|. .+|+..|...+.+.+++.+.
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~----~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 315 LITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR----FGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHHHHHH
Confidence 33455556666666665 44 6799999999999999999999999999984 67999999888777776543
No 150
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.54 E-value=0.0022 Score=52.05 Aligned_cols=44 Identities=16% Similarity=0.007 Sum_probs=35.2
Q ss_pred hhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 40 YSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 40 ~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
.+.......+..|+++|++.++.+....++..++|.+.|.+.+.
T Consensus 327 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 327 NAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred hhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 33334444445567899999999999999999999999999884
No 151
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.54 E-value=0.001 Score=54.88 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=56.5
Q ss_pred hhhhhcccCc-chHHHHHHHHHHHH-HHHHhHhhhhhhhcccCccc--ccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 43 FKVNHLDISP-RFAGILMSFTNCLA-NLAGLLAPIIAGYVIQGKPT--QAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 43 ~~~~~~d~~p-~~~g~~~g~~~~~~-~lg~~i~P~i~G~i~~~~~~--~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
...++.+..| +.++++.|+++... .+|+.++..+.|++.|..+. ...|...|.+.+++.++..+++.++.|++
T Consensus 322 ~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 322 SVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3456667777 56999999998864 79999999999999986432 23466788888888888888888776554
No 152
>PRK12382 putative transporter; Provisional
Probab=97.53 E-value=0.0011 Score=53.57 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=44.3
Q ss_pred hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469 41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV 100 (154)
Q Consensus 41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~ 100 (154)
+...+.+.|..| ++|+.+.|+.+....++..++|.+.+++.+. .+|+..+.+....
T Consensus 131 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~----~g~~~~~~~~~~~ 187 (392)
T PRK12382 131 TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH----FGFAALALTTMVL 187 (392)
T ss_pred HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc----cChHHHHHHHHHH
Confidence 344456678765 7899999999999999999999999998874 6798877755443
No 153
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.52 E-value=0.00077 Score=53.55 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHH
Q psy3469 27 GILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAA 98 (154)
Q Consensus 27 ~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~ 98 (154)
..+.+..++.+..+|...+...+..|++.+.+.++. ..+.+|+++.|.+.|.+.|. .+.+..|++..
T Consensus 235 ~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~----~g~~~a~~v~~ 301 (310)
T TIGR01272 235 WFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADC----LGIQLAFALPV 301 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHh----ccchHHHHHHH
Confidence 334444455666678878888887787778888875 67889999999999999995 56777776443
No 154
>PRK10133 L-fucose transporter; Provisional
Probab=97.52 E-value=0.0027 Score=52.75 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=42.2
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcch-HHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRF-AGILMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~-~g~~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
+.+..+....+...+.+.......+.+.|..|++ ++...++.+.+..+|..++|.+++.+.
T Consensus 116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445555566667777877754 556799999999999999999987654
No 155
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.51 E-value=0.0015 Score=52.72 Aligned_cols=98 Identities=13% Similarity=-0.056 Sum_probs=59.4
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHH-HHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCL-ANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~-~~lg~~i~P~i~G~i~~ 82 (154)
+++..++.++.+.+.+ +.+..++...+.....+...+.......+..+++++...++.+.. ..+|..++|.+.|.+.|
T Consensus 276 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 276 SAICGVVRWGLMGSTT-ALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544 554433333333333444444455555566667788899988744 46677999999999998
Q ss_pred CcccccchHHHHHHHHHHHHHHHHH
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~ 107 (154)
. .++ ..|+..+++.+++.++
T Consensus 355 ~----~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 355 H----LGA-GVFWVMALVALPALFI 374 (382)
T ss_pred h----ccH-HHHHHHHHHHHHHHHH
Confidence 5 445 5677666666655443
No 156
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.51 E-value=0.00043 Score=54.35 Aligned_cols=78 Identities=14% Similarity=0.007 Sum_probs=53.5
Q ss_pred hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
...+++++.+.+.+.+.+..++...+..++.+...+...+...|..| ++||++.|+.++..+++..++|.+.|++.|.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 285 FVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555443113333333333344445555667788889876 6799999999999999999999999999873
No 157
>PRK09669 putative symporter YagG; Provisional
Probab=97.51 E-value=0.00096 Score=55.09 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=50.8
Q ss_pred hhhhhhhhhhcccCc--chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc---ccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 38 AVYSGFKVNHLDISP--RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK---PTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 38 ~~~~~~~~~~~d~~p--~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~---~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
....++.+...|+.+ ++|....++....+.+|+.+++.+...+.... +...+|+..+.+.+++.++..+...+..
T Consensus 125 ~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~ 204 (444)
T PRK09669 125 AINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMT 204 (444)
T ss_pred hhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCe
Confidence 334456678888753 67999999999999998888876554443211 1135788888888877777665444443
Q ss_pred c
Q psy3469 113 S 113 (154)
Q Consensus 113 ~ 113 (154)
+
T Consensus 205 ~ 205 (444)
T PRK09669 205 K 205 (444)
T ss_pred E
Confidence 3
No 158
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.50 E-value=0.00074 Score=54.56 Aligned_cols=61 Identities=8% Similarity=-0.020 Sum_probs=47.6
Q ss_pred hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHH
Q psy3469 40 YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFS 104 (154)
Q Consensus 40 ~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~ 104 (154)
.+...+.+.|..| ++|+.+.|+.+....+|..++|.+.+++.+. .+|+..|++.+.+.++.
T Consensus 130 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~----~g~~~~~~~~~~~~~~~ 191 (399)
T PRK05122 130 GTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW----GGLAGLGLLIMLLALLG 191 (399)
T ss_pred cchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHH
Confidence 3444456678665 7799999999999999999999999999874 67999888766554433
No 159
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.50 E-value=0.00021 Score=58.45 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 53 RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 53 ~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
+++|...|..+..+++|..++|.+.|++.+ .+|+..|++.+++.++..+.+++..++++
T Consensus 137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 195 (420)
T PRK09528 137 RRSGFEYGRARMWGSLGWALCAFIAGILFN-----INPQINFWLGSGSALILLVLLFFAKPDAP 195 (420)
T ss_pred hhccccchhhHHhhhHHHHHHHHHHHHHHh-----cCchHhHHHHHHHHHHHHHHHhccccccc
Confidence 456778899999999999999999999977 46899999988887777666655554443
No 160
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.48 E-value=0.0026 Score=51.30 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 26 VGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 26 ~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
.....+..+..++..+...+...|..|+++|++.++.+....+|+.++|.+.|.+.+
T Consensus 303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 303 LVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 333344444455566777778888889899999999999999999999999999876
No 161
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.48 E-value=0.0012 Score=53.92 Aligned_cols=87 Identities=16% Similarity=0.070 Sum_probs=57.7
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcch--HHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHH
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRF--AGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAA 98 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~--~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~ 98 (154)
+.+..+..+.+...+.++..+...+.+++..|++ +|.+.|+.+..++++..++..+.+.+.. .+-+..+++.+
T Consensus 292 ~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 366 (393)
T PRK11195 292 SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK-----LGVPVVAVIVG 366 (393)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHH
Confidence 4443333333344445555566777888887753 6999999999999999999999997754 34555566555
Q ss_pred HHHHHHHHHHHHhc
Q psy3469 99 VVYLFSSTFYIFAA 112 (154)
Q Consensus 99 ~~~~i~~~~~~~~~ 112 (154)
...+++....+.++
T Consensus 367 ~~~~~~~~~~~~~~ 380 (393)
T PRK11195 367 FGLLVALAMALLWR 380 (393)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444443
No 162
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.45 E-value=0.00085 Score=56.50 Aligned_cols=77 Identities=9% Similarity=0.043 Sum_probs=61.1
Q ss_pred HHHHHhhhhhhhhhhcccCcc----------------------hHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccch
Q psy3469 33 LGFNGAVYSGFKVNHLDISPR----------------------FAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAW 90 (154)
Q Consensus 33 ~~~~g~~~~~~~~~~~d~~p~----------------------~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~ 90 (154)
..+.|...+..+..+.++.|+ +.|.+.|+.+..+.+|+++-|.+.|...+. +++|
T Consensus 356 ~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~---~g~~ 432 (462)
T PRK15034 356 FLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNM---TGSP 432 (462)
T ss_pred HHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHH---cCCc
Confidence 344566566667677666653 689999999999999999999999999874 5779
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy3469 91 RVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 91 ~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
...|+......+++.++-+.+-
T Consensus 433 ~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 433 VGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999888876665553
No 163
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.43 E-value=0.00052 Score=55.61 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 55 AGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 55 ~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
++...|....++++|..++|.+.|.+.+ .+|+..|++.+.+.++..++.+...
T Consensus 131 ~~~~~g~~~~~~~~g~~~g~~~~g~l~~-----~~~~~~f~~~~~~~~~~~~~~~~~~ 183 (396)
T TIGR00882 131 SNFEYGKARMFGCVGWALCASIAGILFS-----IDPQIVFWLGSGFALILMLLLMFAK 183 (396)
T ss_pred cccccchhhhhcccHHHHHHHHHhhhhc-----cCchHHHHHHHHHHHHHHHHHHHhC
Confidence 4557788889999999999999998866 4799999998888877766554433
No 164
>TIGR00895 2A0115 benzoate transport.
Probab=97.42 E-value=0.00081 Score=53.45 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=46.6
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
+.+..+....+...+.+...+..++.++|..| ++||++.|+.+.+..+|.+++|.+.|++.
T Consensus 337 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ll 398 (398)
T TIGR00895 337 SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYLL 398 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhcC
Confidence 44433444444444455566778889999887 67999999999999999999999999863
No 165
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.40 E-value=0.0022 Score=54.03 Aligned_cols=78 Identities=14% Similarity=0.030 Sum_probs=51.4
Q ss_pred HhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcc-----cC---------cccccchHHHHHHHHHHH
Q psy3469 37 GAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVI-----QG---------KPTQAAWRVVFVAAAVVY 101 (154)
Q Consensus 37 g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~-----~~---------~~~~~~~~~~F~~~~~~~ 101 (154)
+..++.....+....| +++|++.|+....+++|..+++.+...+. +. .+...+|+.++++...+.
T Consensus 142 g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~ 221 (462)
T PRK15034 142 GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLL 221 (462)
T ss_pred HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence 4556667778888777 66999999997777777665544443322 10 011345888888888888
Q ss_pred HHHHHHHHHhccC
Q psy3469 102 LFSSTFYIFAASG 114 (154)
Q Consensus 102 ~i~~~~~~~~~~~ 114 (154)
++..+.++++.++
T Consensus 222 iv~~i~~~~~~~~ 234 (462)
T PRK15034 222 AIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHhCCC
Confidence 7777766666444
No 166
>PRK11462 putative transporter; Provisional
Probab=97.38 E-value=0.0021 Score=53.69 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=53.0
Q ss_pred HHHHHhhhhhhhhhhcccCc--chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc---cccchHHHHHHHHHHHHHHHHH
Q psy3469 33 LGFNGAVYSGFKVNHLDISP--RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP---TQAAWRVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 33 ~~~~g~~~~~~~~~~~d~~p--~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~---~~~~~~~~F~~~~~~~~i~~~~ 107 (154)
..+..+..-++++...++.+ ++|....++....+.+|+++++.+...+....+ ...+|.....+.+.+.+++.++
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 33344445578888888765 679999999999999998888777655443211 1245777777777766666554
Q ss_pred HHHh
Q psy3469 108 YIFA 111 (154)
Q Consensus 108 ~~~~ 111 (154)
..+.
T Consensus 200 ~~~~ 203 (460)
T PRK11462 200 CFFT 203 (460)
T ss_pred HHhc
Confidence 4333
No 167
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.38 E-value=0.00045 Score=54.75 Aligned_cols=78 Identities=17% Similarity=0.082 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHH-HHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469 23 YLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFT-NCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV 100 (154)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~-~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~ 100 (154)
+..+....+..++.+...+..++.++|..| ++|+++.|+. +....+|..++|.+.|++.+. ...|+..++.....
T Consensus 313 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~---~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 313 TLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM---TGDWYAIGYYLAAL 389 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH---cCcchhHHHHHHHH
Confidence 333333334444455556778889999887 5699999985 455567889999999999985 23377777766655
Q ss_pred HHH
Q psy3469 101 YLF 103 (154)
Q Consensus 101 ~~i 103 (154)
.++
T Consensus 390 ~l~ 392 (394)
T TIGR00883 390 ALI 392 (394)
T ss_pred HHH
Confidence 443
No 168
>KOG0252|consensus
Probab=97.34 E-value=0.00029 Score=59.13 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=77.5
Q ss_pred cchhHHHHHHHHhhcCCCh---hHHHHHHHHHHHHHHhh-hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhh
Q psy3469 4 GQYGPAVCLVAASYTGCDP---YLTVGILTIGLGFNGAV-YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAG 78 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~-~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G 78 (154)
|++++.++.+.++...++. .-.+++..+..++..+. .+......+|..| +.||+..|+.-.++.+|++++...-+
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 6677777777776654211 11222233333332221 1234457788899 77999999999999999999999999
Q ss_pred hcccC-cccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 79 YVIQG-KPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 79 ~i~~~-~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
++.++ +...-+.+++|++.+++++++.++.+++-..+
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 99883 12236789999999999999999877766333
No 169
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.33 E-value=0.002 Score=52.10 Aligned_cols=64 Identities=11% Similarity=-0.115 Sum_probs=47.6
Q ss_pred hhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 46 NHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 46 ~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
...|..+ +.++...+.......+|.++++.+.+++.+. .+|+..|++.+++.++..+..+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~----~gw~~~f~~~a~l~~~~~~~~~~~~~ 185 (390)
T TIGR02718 121 MAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK----FGQRPAFLLVACVPLASLVCVLWLKD 185 (390)
T ss_pred HHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444444 4467777777777788999999888898884 78999999999888877666544443
No 170
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.28 E-value=0.00055 Score=53.95 Aligned_cols=50 Identities=30% Similarity=0.528 Sum_probs=41.6
Q ss_pred hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHH
Q psy3469 41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVF 94 (154)
Q Consensus 41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F 94 (154)
...+....|..| ++||++.|+.+.+..+|+.++|.+.|++.+. .+|+..|
T Consensus 329 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~----~g~~~~f 379 (379)
T TIGR00881 329 MLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG----FGWAGAF 379 (379)
T ss_pred HHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh----hcccccC
Confidence 344567788776 6799999999999999999999999999984 6677654
No 171
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.25 E-value=0.0032 Score=51.01 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccCc----chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHH
Q psy3469 26 VGILTIGLGFNGAVYSGFKVNHLDISP----RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVY 101 (154)
Q Consensus 26 ~~~l~~~~~~~g~~~~~~~~~~~d~~p----~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~ 101 (154)
.+.+.+...+.|..-+...+...|..+ +++.....+...+-++|.++++.+.+++.+. .+|...|.++++.+
T Consensus 37 ~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~----~~~~~~f~i~~~~~ 112 (372)
T PF00854_consen 37 YIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQN----YGWFLGFGIPAIGM 112 (372)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC----S-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccc----cchhhhhhHHHHHH
Confidence 333444444456667778888888543 3478888899999999999999999999974 88999999999999
Q ss_pred HHHHHHHHHhc
Q psy3469 102 LFSSTFYIFAA 112 (154)
Q Consensus 102 ~i~~~~~~~~~ 112 (154)
+++.+.++.-.
T Consensus 113 ~~~~~~f~~~~ 123 (372)
T PF00854_consen 113 LLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHHhCC
Confidence 99988665443
No 172
>PRK09848 glucuronide transporter; Provisional
Probab=97.20 E-value=0.0019 Score=53.31 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=39.0
Q ss_pred HHHHHHhhhhhhhhhhcccCc--------chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 32 GLGFNGAVYSGFKVNHLDISP--------RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 32 ~~~~~g~~~~~~~~~~~d~~p--------~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
.....+...+..++..+|..| ++.|...|+.++...+|..+++.+.|.+.+
T Consensus 329 ~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 329 ASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555667777777654 235999999999999999999999998764
No 173
>PRK15075 citrate-proton symporter; Provisional
Probab=97.16 E-value=0.0026 Score=52.41 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=37.6
Q ss_pred HHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHH-HHhHhhhhhhhcccC
Q psy3469 35 FNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANL-AGLLAPIIAGYVIQG 83 (154)
Q Consensus 35 ~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~l-g~~i~P~i~G~i~~~ 83 (154)
+.+...+..+..++|..| +.||++.|+.+.++.. ++.++|.+.|++.+.
T Consensus 344 ~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 344 LYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred HHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 344444556678889887 6699999997666655 688999999999985
No 174
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.14 E-value=0.0018 Score=54.06 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=37.7
Q ss_pred HHHHhhhhhhhhhhcccCc--------chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 34 GFNGAVYSGFKVNHLDISP--------RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 34 ~~~g~~~~~~~~~~~d~~p--------~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
...+...+..+++++|..+ +..|...|..+++..++..+++.+.|++.+
T Consensus 336 ~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 336 IGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445667778888643 235779999999999999999999999875
No 175
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.11 E-value=0.0026 Score=53.38 Aligned_cols=50 Identities=8% Similarity=0.159 Sum_probs=41.3
Q ss_pred HHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 34 GFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 34 ~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
...++........+++.+| ++.|+.+|+.+++.++|+.+++.++|++.+.
T Consensus 363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566778888887 6699999999999999999999999999875
No 176
>KOG3762|consensus
Probab=97.09 E-value=0.0064 Score=52.13 Aligned_cols=104 Identities=15% Similarity=0.238 Sum_probs=74.6
Q ss_pred ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHH-HHHHhHhhhhhhhc
Q psy3469 3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLA-NLAGLLAPIIAGYV 80 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~-~lg~~i~P~i~G~i 80 (154)
+|+.+..+=++..++.. ++|+.+-.=.+-....+......-+++.+..| +-+.++.|+..... .+|-.+|.+|+|.+
T Consensus 441 lgLa~~~~Rf~~~S~L~-n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~ 519 (618)
T KOG3762|consen 441 LGLACNVGRFLYYSYLQ-NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFV 519 (618)
T ss_pred ehhhHHHHHHHHHHHhc-CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhh
Confidence 34455555566667765 77776655555555555555556667778776 56999999877655 78999999999999
Q ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 81 IQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 81 ~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
..+ .+-+..|...++.+++..+.+...
T Consensus 520 v~~----fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 520 VER----FGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred hee----ehhHHHHHHHHHHHHHHHHHHHHh
Confidence 985 666788888888877776666554
No 177
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.0034 Score=51.36 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=58.7
Q ss_pred HHhhhhhhhhhhcccC--cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 36 NGAVYSGFKVNHLDIS--PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~--p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.|..++..-+.+.+.. |+..+...|+.+.++++=..++|++.|++.|. +++|+..+...+.+.++..++-+...
T Consensus 310 ~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa---~gsw~~~~~~l~~~~i~m~i~Gl~a~ 385 (395)
T COG2807 310 QGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDA---TGSWSAPLVLLALATLLMLIFGLRAG 385 (395)
T ss_pred cchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHh---cCChHHHHHHHHHHHHHHHHHHhhcc
Confidence 3555666666777754 57799999999999999999999999999995 68999998888777766666554444
No 178
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.09 E-value=0.00054 Score=57.79 Aligned_cols=110 Identities=17% Similarity=0.146 Sum_probs=77.3
Q ss_pred cchhHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-c--hHHHHHHHHHHHHHHHHhHhhhhhhh
Q psy3469 4 GQYGPAVCLVAASYTG-CDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-R--FAGILMSFTNCLANLAGLLAPIIAGY 79 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~--~~g~~~g~~~~~~~lg~~i~P~i~G~ 79 (154)
|-++.++..+++...+ .+.....+.+.+-..+.|+.-+...+.+.|..| + +|-...++.....++|++++|++.++
T Consensus 98 Gail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~ 177 (498)
T COG3104 98 GAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGL 177 (498)
T ss_pred HHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHH
Confidence 4455566666666542 122222222332234456666777788888654 2 37778888889999999999999999
Q ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469 80 VIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 80 i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q 117 (154)
+.+. .+|...|...+.-+.++.+.+++.++.-.+
T Consensus 178 ~~~~----~g~~~gF~~aavGm~~gl~~f~~~~r~~~~ 211 (498)
T COG3104 178 LAIN----YGWHVGFGLAAVGMIIGLVIFLLGRRHVKG 211 (498)
T ss_pred HHHh----hCHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence 9984 789999999999999999988776644443
No 179
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.02 E-value=0.012 Score=48.76 Aligned_cols=82 Identities=11% Similarity=0.196 Sum_probs=59.2
Q ss_pred HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc-----c----------cccchHHHHHHHHH
Q psy3469 36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK-----P----------TQAAWRVVFVAAAV 99 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~-----~----------~~~~~~~~F~~~~~ 99 (154)
.+........++.++.| +....-..+.+.+-.+|.+++|++++++.... + .-..++..|...+.
T Consensus 118 i~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~ 197 (422)
T COG0738 118 IGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAG 197 (422)
T ss_pred hHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34445566678888886 56888899999999999999999999888720 0 01346777888888
Q ss_pred HHHHHHHHHHHhccCCcc
Q psy3469 100 VYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 100 ~~~i~~~~~~~~~~~~~q 117 (154)
..++..+.....+-++.|
T Consensus 198 ~lvll~v~~~~~k~p~~~ 215 (422)
T COG0738 198 LLVLLAVLILLSKLPDLQ 215 (422)
T ss_pred HHHHHHHHHHhccCCcCC
Confidence 887777766555544433
No 180
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.00 E-value=0.017 Score=48.22 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=50.9
Q ss_pred HHhhhhhhhhhhcccC--cchHHHHHHHHHHHHHHHHhHhhhhhhhcccC---cccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469 36 NGAVYSGFKVNHLDIS--PRFAGILMSFTNCLANLAGLLAPIIAGYVIQG---KPTQAAWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~--p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~---~~~~~~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
..+...++.+...|+. +++|....++...++++|+++.+.+...+.+. .+...+|+....+.+++.+++.+...+
T Consensus 120 ~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~ 199 (473)
T PRK10429 120 YTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLR 199 (473)
T ss_pred HHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 3444456778888876 46799999998888888877776665544321 111235777777777776666655444
Q ss_pred hccC
Q psy3469 111 AASG 114 (154)
Q Consensus 111 ~~~~ 114 (154)
..++
T Consensus 200 ~~~e 203 (473)
T PRK10429 200 NVHE 203 (473)
T ss_pred Ccee
Confidence 3433
No 181
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.99 E-value=0.013 Score=48.41 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=39.0
Q ss_pred hhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 40 YSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 40 ~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
...+.+.+.|..| ++|+.+.++..+.--+|.+++..+.|.+.+.
T Consensus 107 ~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~ 151 (403)
T PF03209_consen 107 GTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP 151 (403)
T ss_pred HHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4467789999886 6799999999999999999999999998885
No 182
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=96.98 E-value=0.0077 Score=52.31 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCc-c-------------
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGK-P------------- 85 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~-~------------- 85 (154)
+....+.+..++..+.|..........+-..| ++.|+++|+..+++.+|+.++..+...+.... +
T Consensus 404 n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~ 483 (599)
T PF06609_consen 404 NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALA 483 (599)
T ss_pred CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence 33334444555555555554444444444566 67999999999999999999988876554311 0
Q ss_pred --------------------------------------------cccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 86 --------------------------------------------TQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 86 --------------------------------------------~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
--++||++|+....+.+++.+..+++.+.++
T Consensus 484 aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~ 558 (599)
T PF06609_consen 484 AGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDK 558 (599)
T ss_pred cCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 1256889999998888888888877775553
No 183
>KOG0254|consensus
Probab=96.96 E-value=0.0087 Score=50.61 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=68.4
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccch
Q psy3469 12 LVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAW 90 (154)
Q Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~ 90 (154)
.++..+.. +....+..-.+...+.|........++.|+.| +.||...+..+....+|..++ .+.|+..+.. . .+|
T Consensus 133 ~ii~~~a~-~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~-~-~~W 208 (513)
T KOG0254|consen 133 AIIIALAP-SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKV-Y-AGW 208 (513)
T ss_pred HHHHHHhh-hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccC-C-ccH
Confidence 33334443 44444444455555555555566678899998 579999999999999888888 5666665531 1 589
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469 91 RVVFVAAAVVYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 91 ~~~F~~~~~~~~i~~~~~~~~~~~~~q 117 (154)
|..+.+..+..++-.+. .++.++++.
T Consensus 209 r~~~~~~~i~~~~~~~~-~~~~pesp~ 234 (513)
T KOG0254|consen 209 RIPLGLALIPAVILALG-MLFLPESPR 234 (513)
T ss_pred HHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence 98888887777777776 666655554
No 184
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=96.93 E-value=0.023 Score=45.26 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=39.3
Q ss_pred hhhhhhhhcccCcchHHHHHHHHHHHHH-HHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 40 YSGFKVNHLDISPRFAGILMSFTNCLAN-LAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 40 ~~~~~~~~~d~~p~~~g~~~g~~~~~~~-lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.+.......|..|+++|++.++.+.... +|..+++.+.+...+ ..|. .+...+++.+++.+.++++.
T Consensus 305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~ 372 (377)
T PRK11102 305 SSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLAPFT-----SAWP-MVWSMAFCSILSILFYLYAS 372 (377)
T ss_pred hHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHhccCC-----ChHH-HHHHHHHHHHHHHHHHHHhc
Confidence 3444456677788889999999887754 566666766543322 2233 33344444455555554443
No 185
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.93 E-value=0.012 Score=49.83 Aligned_cols=83 Identities=13% Similarity=0.011 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc------cccchHHHHHHHHHHHH
Q psy3469 30 TIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP------TQAAWRVVFVAAAVVYL 102 (154)
Q Consensus 30 ~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~------~~~~~~~~F~~~~~~~~ 102 (154)
.+....-++..+...+.+++..| +.+|.++|+++...++|+.++..+.+....... ....+.+.|...+++.+
T Consensus 387 ~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 466 (489)
T PRK10207 387 LFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTL 466 (489)
T ss_pred HHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHH
Confidence 33333344445666777888887 669999999999999999999988876632100 01236788888888888
Q ss_pred HHHHHHHHhc
Q psy3469 103 FSSTFYIFAA 112 (154)
Q Consensus 103 i~~~~~~~~~ 112 (154)
++.+++.+..
T Consensus 467 ~~~v~~~~~~ 476 (489)
T PRK10207 467 GVAVVMALMV 476 (489)
T ss_pred HHHHHHHHHH
Confidence 7777666654
No 186
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.92 E-value=0.0077 Score=50.97 Aligned_cols=108 Identities=10% Similarity=0.024 Sum_probs=63.1
Q ss_pred ccchhHHHHHHHHhhcCC--------ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHh
Q psy3469 3 LGQYGPAVCLVAASYTGC--------DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLA 73 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~ 73 (154)
+|+++.++++..+..... +.++.+....+....-.+..+...+.+.+..| +.||..+|++.....+|+.++
T Consensus 355 ~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~ 434 (500)
T PRK09584 355 IGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIA 434 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777666544321 12222332333333334445667778889988 569999998877777777776
Q ss_pred hhhhhhccc------CcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469 74 PIIAGYVIQ------GKPTQAAWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 74 P~i~G~i~~------~~~~~~~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
..+.+.... ......++...|...+.+.++.++++++
T Consensus 435 g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 435 GYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666553221 0001134778888888877655544444
No 187
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=96.85 E-value=0.016 Score=48.17 Aligned_cols=99 Identities=10% Similarity=0.135 Sum_probs=63.1
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHH-HHHHHHHHhHhhhhhhhcccCcccccc
Q psy3469 12 LVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFT-NCLANLAGLLAPIIAGYVIQGKPTQAA 89 (154)
Q Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~-~~~~~lg~~i~P~i~G~i~~~~~~~~~ 89 (154)
....++.+ +++.....=.+-..-..+..-....++++..| +..++.+.+. ++..++|.++.+.+.|++.|+ .|
T Consensus 303 i~~~~~~~-~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~----~G 377 (412)
T PF01306_consen 303 IIGSGFAT-NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR----IG 377 (412)
T ss_dssp HHHHHT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHhhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh----cC
Confidence 44555665 55432221111111122223345567888776 5578999985 688899999999999999995 78
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 90 WRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 90 ~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
++..|++++++.+...++..+.-+++
T Consensus 378 ~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 378 FQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred cHHHHHHHHHHHHHHHHHheeeecCC
Confidence 99999999888777666655554443
No 188
>PRK10133 L-fucose transporter; Provisional
Probab=96.81 E-value=0.011 Score=49.09 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccc-hHHHHHHHHHHHHH
Q psy3469 25 TVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAA-WRVVFVAAAVVYLF 103 (154)
Q Consensus 25 ~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~-~~~~F~~~~~~~~i 103 (154)
.+..+.+..++.+..+|..++...+..|++.+.+.++.. ...+|+.++|.+.|.+.+. .+ -+..|++.....+.
T Consensus 350 ~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~-~~~~g~~~~~~i~G~l~~~----~g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 350 GLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDA----AGNIPTAELIPALCFAV 424 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHh-HHhccchHHHHHHHHHHHh----ccchHHHHHHHHHHHHH
Confidence 344555566667777888898888888888888888886 4667899999999999884 33 56777755444333
No 189
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=96.80 E-value=0.024 Score=45.07 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=35.3
Q ss_pred HHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 36 NGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
.+...+.......|..|+++|++.++.+.....++.+.+.+.|.+.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 314 NSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44445556667778778889999999999998877777777775544
No 190
>KOG0569|consensus
Probab=96.77 E-value=0.0044 Score=52.48 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhh-hcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469 29 LTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAG-YVIQGKPTQAAWRVVFVAAAVVYLFSST 106 (154)
Q Consensus 29 l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G-~i~~~~~~~~~~~~~F~~~~~~~~i~~~ 106 (154)
-.+.....+...+....+++|.+| +.||....+......+|-.++-.++- .+.++ ...|.+.+.+..+..++..+
T Consensus 123 R~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt---~~~W~~l~~~~~i~~~~~l~ 199 (485)
T KOG0569|consen 123 RLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGT---EDLWPYLLAFPLIPALLQLA 199 (485)
T ss_pred HHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCC---CcchHHHHHHHHHHHHHHHH
Confidence 333333345555566678899999 56999999999999999999854433 55553 46699999888777766666
Q ss_pred HHHHhccCCcc
Q psy3469 107 FYIFAASGDRQ 117 (154)
Q Consensus 107 ~~~~~~~~~~q 117 (154)
.. .+.++.|+
T Consensus 200 ~l-~~~PESPk 209 (485)
T KOG0569|consen 200 LL-PFLPESPK 209 (485)
T ss_pred HH-hcCCCCcc
Confidence 44 44444443
No 191
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.74 E-value=0.015 Score=48.49 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcccC---cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHH
Q psy3469 27 GILTIGLGFNGAVYSGFKVNHLDIS---PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLF 103 (154)
Q Consensus 27 ~~l~~~~~~~g~~~~~~~~~~~d~~---p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i 103 (154)
+++.++..+..+.--..-+...|.. |+.+|...+....+..+|++++..+.|.+.+. .+++..|.+.+.+.++
T Consensus 91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~----~~~~~~f~i~~~~~~l 166 (433)
T PF03092_consen 91 VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS----FGPQGVFLISAALPLL 166 (433)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc----CCCeEEehHHHHHHHH
Confidence 3333333333333334445555643 44488999999999999999999999999885 5678888888877777
Q ss_pred HHHHHHHhccC
Q psy3469 104 SSTFYIFAASG 114 (154)
Q Consensus 104 ~~~~~~~~~~~ 114 (154)
..+..+++.++
T Consensus 167 ~~~~~~~~~~e 177 (433)
T PF03092_consen 167 MLIVALFLLEE 177 (433)
T ss_pred HHHHHHHhhhh
Confidence 76666555554
No 192
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.68 E-value=0.0052 Score=51.09 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=60.2
Q ss_pred HHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469 36 NGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
+|..++..-++...+.| ++.+...|+++..+..+.+++|.+.+.+.+. +++-|..+.....+++++.+..+.
T Consensus 355 ~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~i---Tg~~r~g~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 355 LGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQI---TGSSRAGVLSIIVLLLIGLLLLLR 427 (438)
T ss_pred cchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHH---hcchhhHHHHHHHHHHhhHhhEEe
Confidence 45556677778888777 7799999999999999999999999999995 577888888888888888776543
No 193
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.05 Score=46.01 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcccC--cchHHHHHHHHHHHHHHHHhHhhhhhhhcccC---cccccchHHHHHHHH
Q psy3469 24 LTVGILTIGLGFNGAVYSGFKVNHLDIS--PRFAGILMSFTNCLANLAGLLAPIIAGYVIQG---KPTQAAWRVVFVAAA 98 (154)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~~~~~~~~d~~--p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~---~~~~~~~~~~F~~~~ 98 (154)
++.+...+...+..+..-++.+...++. |++|....++-..+..+|+++...+.+.+... .+...+|+..-.+.+
T Consensus 114 ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~ 193 (467)
T COG2211 114 YALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLG 193 (467)
T ss_pred HHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence 4444444444445555556788888876 57899999999999999977776655555433 112467877777777
Q ss_pred HHHHHHHHHHHHhccCCc
Q psy3469 99 VVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 99 ~~~~i~~~~~~~~~~~~~ 116 (154)
.+..+..+..++-.+++.
T Consensus 194 vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 194 VIGVILLLFCFFNVKERV 211 (467)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 776666665544444443
No 194
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=96.60 E-value=0.054 Score=45.85 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=75.3
Q ss_pred HHHHHhhc-CCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chH--------------------------HHHHHHH
Q psy3469 11 CLVAASYT-GCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFA--------------------------GILMSFT 62 (154)
Q Consensus 11 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~--------------------------g~~~g~~ 62 (154)
+.+.+.+. +.+.+...++++++..+.+.....+.+++.|+.+ +.+ +.++|..
T Consensus 114 ~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G 193 (477)
T PF11700_consen 114 ATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLG 193 (477)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHH
Confidence 33344443 3234566777788877777766677788999875 556 9999999
Q ss_pred HHHHHHHHhHhhhhhhhcccCcc----cccchHHHHHHHHHHHHHHHHHHHHhccCCccC
Q psy3469 63 NCLANLAGLLAPIIAGYVIQGKP----TQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQP 118 (154)
Q Consensus 63 ~~~~~lg~~i~P~i~G~i~~~~~----~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~ 118 (154)
...+++|+.+.-.+.-.+....+ ...+.|..+.+.++-.++-.+...++.++++.+
T Consensus 194 ~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~ 253 (477)
T PF11700_consen 194 WALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGP 253 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999988776544432211 134568889998888888888777777766654
No 195
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=96.55 E-value=6e-05 Score=61.88 Aligned_cols=86 Identities=21% Similarity=0.203 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHH
Q psy3469 30 TIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFY 108 (154)
Q Consensus 30 ~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~ 108 (154)
.+..+..|........++.|..| ++||...++.+....+|.+++..+.-.+.... ...+||..+.+.+...++..+..
T Consensus 110 ~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~Wr~~~~~~~~~~l~~~~~~ 188 (451)
T PF00083_consen 110 FLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS-DNWGWRILLIFGAIPSLLVLLLR 188 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 33333445555667778899876 77999999999999889888887765443321 13569999998877776654433
Q ss_pred HHhccCCcc
Q psy3469 109 IFAASGDRQ 117 (154)
Q Consensus 109 ~~~~~~~~q 117 (154)
++.++.|.
T Consensus 189 -~~~pESP~ 196 (451)
T PF00083_consen 189 -FFLPESPR 196 (451)
T ss_pred -cccccccc
Confidence 44454443
No 196
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=96.54 E-value=0.027 Score=47.30 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 28 ILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 28 ~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
...+.....+...+......++..| +++|.+.|+.++..++|+.+|+.+.|.+.+
T Consensus 357 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 357 LMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555556666777666 779999999999999999999999998854
No 197
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.46 E-value=0.0086 Score=50.26 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=46.2
Q ss_pred hhhhhhhcccCcchH---HHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 41 SGFKVNHLDISPRFA---GILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 41 ~~~~~~~~d~~p~~~---g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
...-....|..++++ +...++......+|.++++.+.|++.+. .+|+..|++.+.+.++..+...++
T Consensus 139 v~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~----~~~~~~f~~~a~l~ll~~~~~~~~ 208 (468)
T TIGR00788 139 VLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK----TLTRILFLITAALLLLQLFVSNLS 208 (468)
T ss_pred HhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHHHHHHHhc
Confidence 345556666555333 3344444455568999999999999884 689999999988888874444333
No 198
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.44 E-value=0.022 Score=48.29 Aligned_cols=90 Identities=17% Similarity=-0.022 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcccCc---chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHH
Q psy3469 25 TVGILTIGLGFNGAVYSGFKVNHLDISP---RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVY 101 (154)
Q Consensus 25 ~~~~l~~~~~~~g~~~~~~~~~~~d~~p---~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~ 101 (154)
++.++++.........+.-++++++..| ++.|...|+.|.+-.++.++..+..|.+.+..+ .+-.+.|.+.++.+
T Consensus 383 ~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g--~~~~~~~~~~gv~~ 460 (477)
T TIGR01301 383 ALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG--GGNLPAFVVGAVAA 460 (477)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC--CCCeeHHHHHHHHH
Confidence 3334444444444445666778888665 457999999999999999999999998665432 23566888888888
Q ss_pred HHHHHHHHHhccCCc
Q psy3469 102 LFSSTFYIFAASGDR 116 (154)
Q Consensus 102 ~i~~~~~~~~~~~~~ 116 (154)
+++++..++.-++.+
T Consensus 461 ~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 461 FVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHHHHHhCCCCC
Confidence 888888777665543
No 199
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.43 E-value=0.0089 Score=47.54 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=37.8
Q ss_pred HHHHhhhhhhhhhhcccC-c-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 34 GFNGAVYSGFKVNHLDIS-P-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 34 ~~~g~~~~~~~~~~~d~~-p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
.+.+...+...+...+.. + ++++.+.|+.+.+++++++++|.+.|++.|.
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 297 LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555543 3 5689999999999999999999999999985
No 200
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.39 E-value=0.023 Score=46.81 Aligned_cols=94 Identities=13% Similarity=0.177 Sum_probs=57.4
Q ss_pred chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHH-HHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGI-LMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~-~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
.++.+++..++.+.+ +. ..+..+.+..++.+..+|..++...+..+++... ..++.... +|+++.|++.|++.|.
T Consensus 306 ~~~~~~~~ll~~~~~-~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 306 AIIGMALCLGSIFAG-GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHHHHHHHHHHHHcC-Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence 344444555555543 33 3345555555555666788888888877665443 44444433 9999999999999994
Q ss_pred cc--cccchHHHHHHHHHHHH
Q psy3469 84 KP--TQAAWRVVFVAAAVVYL 102 (154)
Q Consensus 84 ~~--~~~~~~~~F~~~~~~~~ 102 (154)
.+ +.++++..|++...+.+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 382 KEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred hcccccCccchHHHHHHHHHH
Confidence 11 11247778886544433
No 201
>KOG0255|consensus
Probab=96.37 E-value=0.041 Score=46.39 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=58.1
Q ss_pred ccchhHHHHHHHHhhcCCChh--HHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhh
Q psy3469 3 LGQYGPAVCLVAASYTGCDPY--LTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGY 79 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~ 79 (154)
.+++..+++++...+...... ...+...++.++.+......+.+..|+.| ..|..+.|..+.++.++++++|.+.-.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~ 464 (521)
T KOG0255|consen 385 LSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLL 464 (521)
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666542222 34555555666666666667889999998 669999999999999999999999866
Q ss_pred ccc
Q psy3469 80 VIQ 82 (154)
Q Consensus 80 i~~ 82 (154)
...
T Consensus 465 ~~~ 467 (521)
T KOG0255|consen 465 LRQ 467 (521)
T ss_pred Hhh
Confidence 654
No 202
>KOG2816|consensus
Probab=96.36 E-value=0.024 Score=47.92 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=66.2
Q ss_pred HhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 37 GAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 37 g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
....+...+.++|... ++|....|+.+..-..+..++|.+.+.+... .++-.+|.+.+...++..+...++.++.
T Consensus 127 ~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~----~~~a~~f~ia~~~~~~~~~y~~~~l~Es 202 (463)
T KOG2816|consen 127 SAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF----LGIALVFLIAAASGILSLLYMLLFLPES 202 (463)
T ss_pred hhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----cCchHHHHHHHHHHHHHHHHHhhccccc
Confidence 3345667778999876 7799999999999999999999999999984 7788899998888888888777777666
Q ss_pred ccCCCC
Q psy3469 116 RQPWDN 121 (154)
Q Consensus 116 ~q~w~~ 121 (154)
.++-.+
T Consensus 203 l~~~~~ 208 (463)
T KOG2816|consen 203 LQEKER 208 (463)
T ss_pred cCcccc
Confidence 664333
No 203
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.36 E-value=0.058 Score=44.72 Aligned_cols=96 Identities=20% Similarity=0.126 Sum_probs=67.8
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccC-cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc------cccchHHH
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDIS-PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP------TQAAWRVV 93 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~------~~~~~~~~ 93 (154)
+.+.....+.+.....|...-+.-+.++|+. +++.|...|.+...+.++..++-.+.|.+.|.-. ...+|..+
T Consensus 300 ~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~V 379 (403)
T PF03209_consen 300 SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVV 379 (403)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 4433333333333334554445667888887 4789999999999999999999999999887411 23568889
Q ss_pred HHHHHHHHHHHHHHHHHhccCCc
Q psy3469 94 FVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 94 F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
|..=+..++++.++.....+++.
T Consensus 380 F~lEa~ll~~a~~ll~~l~~~~f 402 (403)
T PF03209_consen 380 FALEAVLLLAALVLLGRLDRREF 402 (403)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcc
Confidence 99988888888877666655443
No 204
>KOG1330|consensus
Probab=96.21 E-value=0.0088 Score=50.33 Aligned_cols=80 Identities=11% Similarity=0.108 Sum_probs=46.9
Q ss_pred cchhHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHhhhhhhhhhhcccC-cchHHHHHHHHHHHHHHHH-hHhhhhhhhc
Q psy3469 4 GQYGPAVCLVAASYTGC-DPYLTVGILTIGLGFNGAVYSGFKVNHLDIS-PRFAGILMSFTNCLANLAG-LLAPIIAGYV 80 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~-~i~P~i~G~i 80 (154)
+..+++.++++.+.... +.+..++++.++....-.+.+...-...++. |++|.++.++...+..+-+ +-+|.+.|.+
T Consensus 330 g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGil 409 (493)
T KOG1330|consen 330 GAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGIL 409 (493)
T ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhH
Confidence 44555566666655431 2222333333333333333344444566654 5889999999888876644 4456699999
Q ss_pred ccC
Q psy3469 81 IQG 83 (154)
Q Consensus 81 ~~~ 83 (154)
.|.
T Consensus 410 sd~ 412 (493)
T KOG1330|consen 410 SDK 412 (493)
T ss_pred HHH
Confidence 885
No 205
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=96.21 E-value=0.051 Score=47.84 Aligned_cols=88 Identities=15% Similarity=0.136 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccCc-c---hHHHHHHHHHHHHHHHHhHhhhhhhhcccCc---ccccchHHHHHHHH
Q psy3469 26 VGILTIGLGFNGAVYSGFKVNHLDISP-R---FAGILMSFTNCLANLAGLLAPIIAGYVIQGK---PTQAAWRVVFVAAA 98 (154)
Q Consensus 26 ~~~l~~~~~~~g~~~~~~~~~~~d~~p-~---~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~---~~~~~~~~~F~~~~ 98 (154)
++.+.+...+.|...+...+...|..+ + .+-....+...+.++|+++++++.+++.+.. +...+|..+|.+.+
T Consensus 89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~ 168 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA 168 (654)
T ss_pred HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence 344455555556666777777777442 2 3778899999999999999999999997421 11246999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy3469 99 VVYLFSSTFYIFAAS 113 (154)
Q Consensus 99 ~~~~i~~~~~~~~~~ 113 (154)
++++++.+++....+
T Consensus 169 i~m~ia~lvf~~g~k 183 (654)
T TIGR00926 169 ILMILALIVFMAGSK 183 (654)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999888765543
No 206
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=96.12 E-value=0.0097 Score=46.48 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhh
Q psy3469 29 LTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAP 74 (154)
Q Consensus 29 l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P 74 (154)
..+...+.+...+...+..+|..| +++|++.|+.++..+++++++|
T Consensus 306 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 306 LFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 333333556667788889999887 7899999999999999999998
No 207
>PRK09669 putative symporter YagG; Provisional
Probab=96.08 E-value=0.081 Score=43.67 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc--------chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP--------RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p--------~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
+.+..++...+.....+...+..++.+.|..+ +..|...|+.+++..+|..++|.+.|++.+.
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444455556778888888653 2357889999999999999999999998764
No 208
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=96.05 E-value=0.17 Score=40.71 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 54 FAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 54 ~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.|.+.++. .++..++|.+.|++.+
T Consensus 324 ~~g~~~~~~----~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 324 RAGVASSTL----GIAQVCGSSLWIWLAA 348 (392)
T ss_pred cccHHHHHH----HHHHHHHHHHHHHHHH
Confidence 345555544 4555555666666655
No 209
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=96.02 E-value=0.15 Score=41.90 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=59.7
Q ss_pred HHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 36 NGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
.+...-.....+.+-+|++.+..+|+++..-++++.+++.+.-.+.+. ..+|+....+-+...+++.+.|+--
T Consensus 113 Iav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~---~~gW~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 113 IAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQH---SGGWRGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred HHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHh---hccHHHHHHHHHHHHHHHHHHHhhh
Confidence 333344556677778899999999999999999999999999999884 2579999888888888888877654
No 210
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=95.98 E-value=0.043 Score=46.39 Aligned_cols=79 Identities=23% Similarity=0.093 Sum_probs=55.4
Q ss_pred chhHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHhhhhhhhhhhcccC--------cchHHHHHHHHHHHHHHHHhHhhh
Q psy3469 5 QYGPAVCLVAASYTGC-DPYLTVGILTIGLGFNGAVYSGFKVNHLDIS--------PRFAGILMSFTNCLANLAGLLAPI 75 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~--------p~~~g~~~g~~~~~~~lg~~i~P~ 75 (154)
.+...+...++-+.+. +.+..++..++...+.+...+..|+.++|.. .+.-|...|...++.-+|.+++..
T Consensus 309 ~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~ 388 (467)
T COG2211 309 LLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF 388 (467)
T ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444442 3344555556666777777788999998843 134699999999999999999999
Q ss_pred hhhhcccC
Q psy3469 76 IAGYVIQG 83 (154)
Q Consensus 76 i~G~i~~~ 83 (154)
+.|++++.
T Consensus 389 ~~g~~L~~ 396 (467)
T COG2211 389 IPGWILGA 396 (467)
T ss_pred HHHHHHHH
Confidence 99988764
No 211
>PTZ00207 hypothetical protein; Provisional
Probab=95.96 E-value=0.012 Score=51.18 Aligned_cols=96 Identities=8% Similarity=-0.063 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHh-hhhhhhcccCccc---------ccchHHHH
Q psy3469 25 TVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLA-PIIAGYVIQGKPT---------QAAWRVVF 94 (154)
Q Consensus 25 ~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~-P~i~G~i~~~~~~---------~~~~~~~F 94 (154)
..+...+...+.|+..+.......|++.++-|+.+-+.....-+|..+- -.+.|.+.|.+.. .+=++..|
T Consensus 455 L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~ 534 (591)
T PTZ00207 455 LPLPYFIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPL 534 (591)
T ss_pred hHHHHHHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHH
Confidence 3445555566677777888889999766999999999999998888887 6788999876431 12288899
Q ss_pred HHHHHHHHHHHHHHHHhccCCccCCC
Q psy3469 95 VAAAVVYLFSSTFYIFAASGDRQPWD 120 (154)
Q Consensus 95 ~~~~~~~~i~~~~~~~~~~~~~q~w~ 120 (154)
++++++++++.+...++.-+.++-+.
T Consensus 535 ~v~~~~~~~g~~~s~~l~~R~r~~y~ 560 (591)
T PTZ00207 535 AFLLGLSFLAFITSTYVHLQYRRLCL 560 (591)
T ss_pred HHHHHHHHHHHHHHhheeeehHHHHH
Confidence 99999999999988887655554333
No 212
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=95.92 E-value=0.095 Score=44.41 Aligned_cols=52 Identities=17% Similarity=0.042 Sum_probs=42.5
Q ss_pred HHHHHHHhhhh-hhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 31 IGLGFNGAVYS-GFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 31 ~~~~~~g~~~~-~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
.+-.......+ .+|....|+.. ++..+-+++.+..+++|.+++|.++.++.+
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344456 89999999875 889999999999999999999999998873
No 213
>KOG2325|consensus
Probab=95.91 E-value=0.095 Score=44.53 Aligned_cols=91 Identities=11% Similarity=-0.001 Sum_probs=60.1
Q ss_pred HHHHHHHHHhh---hhhhhhhhcccC-cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCc--c-------cccchHHHHH
Q psy3469 29 LTIGLGFNGAV---YSGFKVNHLDIS-PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGK--P-------TQAAWRVVFV 95 (154)
Q Consensus 29 l~~~~~~~g~~---~~~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~--~-------~~~~~~~~F~ 95 (154)
+.++..+.|.. .+..-++++|.. ++.|-++.+..+....+|.++||.+...+...- + .-+.|...=+
T Consensus 133 mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w 212 (488)
T KOG2325|consen 133 MLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAW 212 (488)
T ss_pred HHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHH
Confidence 33344444433 455667888854 577888888888877777777777755543320 0 1245677788
Q ss_pred HHHHHHHHHHHHHHHhccCCccCC
Q psy3469 96 AAAVVYLFSSTFYIFAASGDRQPW 119 (154)
Q Consensus 96 ~~~~~~~i~~~~~~~~~~~~~q~w 119 (154)
+++.+.++..+...++.++...+-
T Consensus 213 ~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 213 LMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred HHHHHHHHHHHHHHhheeecccCc
Confidence 888888888888888777665544
No 214
>PF13347 MFS_2: MFS/sugar transport protein
Probab=95.88 E-value=0.056 Score=44.39 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=57.4
Q ss_pred cchhHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc--------chHHHHHHHHHHHHHHHHhHhh
Q psy3469 4 GQYGPAVCLVAASYTG-CDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP--------RFAGILMSFTNCLANLAGLLAP 74 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p--------~~~g~~~g~~~~~~~lg~~i~P 74 (154)
+.++.+++...+.+.+ .+.+..++...+...+.+......++..+|..+ +..|...|+.++...++..+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~ 375 (428)
T PF13347_consen 296 GLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAG 375 (428)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHH
Confidence 4455555555555543 255555666666666666666778888888654 3369999999999999999999
Q ss_pred hhhhhcccC
Q psy3469 75 IIAGYVIQG 83 (154)
Q Consensus 75 ~i~G~i~~~ 83 (154)
.+.|.+.+.
T Consensus 376 ~i~g~~l~~ 384 (428)
T PF13347_consen 376 AIVGLLLAL 384 (428)
T ss_pred HHHHHHHHH
Confidence 999988654
No 215
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=95.86 E-value=0.11 Score=42.57 Aligned_cols=46 Identities=17% Similarity=0.052 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHH
Q psy3469 54 FAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFS 104 (154)
Q Consensus 54 ~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~ 104 (154)
.+|++.|+.++....+..+++.+.|++.+. +-+..|...+.+..+.
T Consensus 344 ~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 344 PKGTVSASLNMVILMVMAVSVEIGRWLWFN-----GGRLPFHLLAVVAGVI 389 (413)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHH
Confidence 479999999999999999999999999773 3345555554444443
No 216
>KOG2615|consensus
Probab=95.82 E-value=0.042 Score=45.54 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=36.7
Q ss_pred hhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 38 AVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 38 ~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
...+.....+....| ++||++.|+..+.+.++.++||.+.|.+..
T Consensus 368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 334555555566777 779999999999999999999999998865
No 217
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=95.79 E-value=0.056 Score=42.02 Aligned_cols=65 Identities=12% Similarity=0.060 Sum_probs=42.4
Q ss_pred hhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 46 NHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 46 ~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
+...-.|++||++.|+.-..-.+++.+-..+...+.+. +-...+.+.+....+..+...++.+..
T Consensus 120 t~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-----~~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 120 TCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-----DPSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred HHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHHHHHHHhhheecc
Confidence 33345689999999999999999999988888877763 222334444444443333344444433
No 218
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=95.63 E-value=0.063 Score=44.28 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=39.3
Q ss_pred HHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 32 GLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 32 ~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
...+.+...+.......+..| +++|.+.|+.++.+++|+.++|.+.|.+.+.
T Consensus 358 ~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 358 RGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555556555 7899999999999999999999999999873
No 219
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=95.46 E-value=0.036 Score=45.98 Aligned_cols=94 Identities=14% Similarity=0.195 Sum_probs=58.7
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccc
Q psy3469 10 VCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAA 89 (154)
Q Consensus 10 i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~ 89 (154)
+.++...+++ + ...+..+.+...+++..+|..++...+..|++...+.+ .-..+.+|+++.|++.|++.|. .+
T Consensus 314 ll~~~~~l~~-g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~s~-~l~maivGGAiiP~l~G~i~d~----~g 386 (422)
T COG0738 314 LLLLAVALIG-G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSG-LLVMAIVGGAIIPPLQGVIADM----FG 386 (422)
T ss_pred HHHHHHHHhc-C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccccccce-eeeeheecchHHHHHHHHHHHh----hh
Confidence 3344445554 4 34555555555566777899998888877755444444 4466788999999999999995 44
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy3469 90 WRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 90 ~~~~F~~~~~~~~i~~~~~~~ 110 (154)
-...+......+.+..+.+.+
T Consensus 387 ~~~~~~~~pllc~lyV~~~~~ 407 (422)
T COG0738 387 IQLTFLIVPLLCYLYVLFFAL 407 (422)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 444554344444444433333
No 220
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=95.12 E-value=0.96 Score=37.77 Aligned_cols=78 Identities=5% Similarity=0.069 Sum_probs=51.4
Q ss_pred hhhhhhcccC-cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccCCC
Q psy3469 42 GFKVNHLDIS-PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWD 120 (154)
Q Consensus 42 ~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~ 120 (154)
.+++++=... |++--.+++....+.-+|.+++..++=.++.. ...++...+++..+...++.+..+++-+.++.-+-
T Consensus 113 ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~--~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f 190 (412)
T PF01770_consen 113 AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF--GGVSYFQLNYISLASVSLALLIALFLPMPKRSLFF 190 (412)
T ss_pred HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccce
Confidence 4555555544 46667778877777777777777666655553 23668888888877777777776676655554333
Q ss_pred C
Q psy3469 121 N 121 (154)
Q Consensus 121 ~ 121 (154)
+
T Consensus 191 ~ 191 (412)
T PF01770_consen 191 H 191 (412)
T ss_pred e
Confidence 3
No 221
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=94.87 E-value=0.11 Score=42.80 Aligned_cols=37 Identities=8% Similarity=-0.071 Sum_probs=22.9
Q ss_pred HHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHH
Q psy3469 66 ANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 66 ~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~ 107 (154)
+.+|.+++|.+.|.+.. ...|. .|++.+++.++..+.
T Consensus 139 G~lG~~ig~~l~g~l~~----~~~~~-~f~~~~~~~~~~~~~ 175 (418)
T TIGR00889 139 GTIGFIAAMWAVSLLDI----ELSNI-QLYITAGSSALLGVF 175 (418)
T ss_pred hhHHHHHHHHHHHHhcc----cchhH-HHHHHHHHHHHHHHH
Confidence 35788999999998832 13343 455566655555543
No 222
>KOG3626|consensus
Probab=94.77 E-value=0.13 Score=45.67 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhh----hhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc--------------
Q psy3469 25 TVGILTIGLGFNGAVYSGFKV----NHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP-------------- 85 (154)
Q Consensus 25 ~~~~l~~~~~~~g~~~~~~~~----~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~-------------- 85 (154)
..+++.++..+.|...++.++ ++=|... ++.....|+..+++.+|.++|-++++++...+-
T Consensus 236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DP 315 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDP 315 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCc
Confidence 344555666666665555554 5556554 678999999999999999999999988754321
Q ss_pred -cccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 86 -TQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 86 -~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
+-+.|-..|++++.+.++..+.+++|-++.+
T Consensus 316 rWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 316 RWIGAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 1345777899999999999998877755544
No 223
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=94.65 E-value=0.26 Score=41.97 Aligned_cols=41 Identities=15% Similarity=0.057 Sum_probs=37.7
Q ss_pred hhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 42 GFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 42 ~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
.+|...-|... ++..+.+++....+++|.+++..++.++.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999876 889999999999999999999999988877
No 224
>PRK11462 putative transporter; Provisional
Probab=94.64 E-value=0.13 Score=43.07 Aligned_cols=48 Identities=17% Similarity=0.098 Sum_probs=34.2
Q ss_pred HHhhhhhhhhhhcccCc-------c-hHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 36 NGAVYSGFKVNHLDISP-------R-FAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p-------~-~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
.+...+..++.+.|... + ..|...+..+++..+|..+++.+.|++++.
T Consensus 332 ~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 332 HQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred HHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555677777432 2 247777888899999999999999988753
No 225
>KOG1479|consensus
Probab=94.04 E-value=0.18 Score=41.90 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHH
Q psy3469 29 LTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFY 108 (154)
Q Consensus 29 l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~ 108 (154)
.++...+.+..+++.+....++.+++.....+-.+.+|.+.+.+.=..-...-+. ..+--.-|.+...+.+++.+++
T Consensus 124 vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~---~~sA~~yF~~s~~~~llC~i~y 200 (406)
T KOG1479|consen 124 VVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDS---RTSALIYFITSTVILLLCFVLY 200 (406)
T ss_pred HHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCC---CceeehhHHHHHHHHHHHHHHH
Confidence 3333444566677788888888889877777767777777666655554455442 2444456778888888999988
Q ss_pred HHhccCCcc
Q psy3469 109 IFAASGDRQ 117 (154)
Q Consensus 109 ~~~~~~~~q 117 (154)
..+.+.+.-
T Consensus 201 ~~l~~lpf~ 209 (406)
T KOG1479|consen 201 LVLPKLPFV 209 (406)
T ss_pred HHhhcchHH
Confidence 865554443
No 226
>KOG3764|consensus
Probab=93.71 E-value=0.31 Score=40.75 Aligned_cols=56 Identities=11% Similarity=0.266 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 54 FAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 54 ~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
--|.++++......+|-++||.++|.+.+. .|++|.-.+.++..++.+-+..++..
T Consensus 400 vYGsVyaIad~a~sla~a~GP~~gg~iv~~----iGF~wl~~iig~~n~iyapvl~ll~~ 455 (464)
T KOG3764|consen 400 VYGSVYAIADAAFSLAYAIGPTFGGSLVEA----IGFEWLMTIIGILNLIYAPVLLLLRI 455 (464)
T ss_pred eeeeHHHHHHHHHHHhhhccccccchheee----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999985 88999888888888888777766654
No 227
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=93.44 E-value=0.018 Score=49.45 Aligned_cols=94 Identities=11% Similarity=0.122 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhh----hhcccC-cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc--------------
Q psy3469 25 TVGILTIGLGFNGAVYSGFKV----NHLDIS-PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP-------------- 85 (154)
Q Consensus 25 ~~~~l~~~~~~~g~~~~~~~~----~~~d~~-p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~-------------- 85 (154)
.+.++.++-.+.|...++.|+ ++=|-. |++.+...|+..+...+|.++|-.++|.++..+-
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p 219 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITP 219 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCC
Confidence 456667777777776666665 555544 4678999999999999999999999887764310
Q ss_pred ----cccchHHHHHHHHHHHHHHHHHHHHhccCCccC
Q psy3469 86 ----TQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQP 118 (154)
Q Consensus 86 ----~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~ 118 (154)
+.+.|=..|++++.+.++..+.+..|-|+-+..
T Consensus 220 ~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 220 SDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp -------------------------------------
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 123465678888888888888777665555443
No 228
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=93.37 E-value=0.0031 Score=51.72 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=55.6
Q ss_pred hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469 41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q 117 (154)
+..+....|+.| +.|+++.|+....+.+++++.|.+...+.+. .+-...|.+.++++++..+...++.++++.
T Consensus 368 ~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~----~~~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 368 PLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN----LGGWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc----ccccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 456678899998 6799999999999999999999999888874 222355666666667776666666655543
No 229
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=93.29 E-value=2.1 Score=36.61 Aligned_cols=102 Identities=19% Similarity=0.125 Sum_probs=59.0
Q ss_pred ccchhHHHHHHHHhh----cCCChhHHHHHHHHHHHHHHh----hhhhhhhhhcccCc-chHHHHHHHHHHHH-HHHHhH
Q psy3469 3 LGQYGPAVCLVAASY----TGCDPYLTVGILTIGLGFNGA----VYSGFKVNHLDISP-RFAGILMSFTNCLA-NLAGLL 72 (154)
Q Consensus 3 ig~~~~ai~~~~~~~----~~~~~~~~~~~l~~~~~~~g~----~~~~~~~~~~d~~p-~~~g~~~g~~~~~~-~lg~~i 72 (154)
+|+++.++++.++.+ ...+......++...+.++.. ..|...+.+++++| +.+|..+|.+.... .+|+.+
T Consensus 350 ~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~ 429 (493)
T PRK15462 350 LGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYL 429 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777655532 111111222223333333222 24667788899999 55999999996644 577777
Q ss_pred hhhhhhhcccCcc--------cccchHHHHHHHHHHHHHH
Q psy3469 73 APIIAGYVIQGKP--------TQAAWRVVFVAAAVVYLFS 104 (154)
Q Consensus 73 ~P~i~G~i~~~~~--------~~~~~~~~F~~~~~~~~i~ 104 (154)
+..+.+....... +...|...|...+.+.++.
T Consensus 430 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 430 AGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 7666665532100 1135777888888877665
No 230
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=92.71 E-value=0.16 Score=40.08 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHH
Q psy3469 26 VGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAG 70 (154)
Q Consensus 26 ~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~ 70 (154)
+..+.+...+.+...+..+....++.|+++|++.|+.+..+++|+
T Consensus 322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 322 IVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLGG 366 (366)
T ss_pred HHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCCC
Confidence 344444455566667778888999999999999999999988764
No 231
>PRK03612 spermidine synthase; Provisional
Probab=92.42 E-value=1 Score=38.69 Aligned_cols=50 Identities=10% Similarity=-0.015 Sum_probs=35.9
Q ss_pred HHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 33 LGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 33 ~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
.++.|+..|.......+...++.|...|-..++..+|+++|+++.|+++-
T Consensus 121 ~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 121 GLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 34566666655555544444456788888899999999999999997764
No 232
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=92.37 E-value=0.53 Score=40.25 Aligned_cols=99 Identities=11% Similarity=0.119 Sum_probs=60.3
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcc-cCcchHHHHHHHHHHHHHHHHhHhhhhh----h
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLD-ISPRFAGILMSFTNCLANLAGLLAPIIA----G 78 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d-~~p~~~g~~~g~~~~~~~lg~~i~P~i~----G 78 (154)
+.++.+.+++++.+.. +.|.+....++...+..+..+....-++. +..+.-|.+.|+.++.+-+=..+-..++ |
T Consensus 336 ~s~~~~gll~~m~~t~-~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVvd~~g 414 (511)
T TIGR00806 336 VSAIQAGLVFWMSQSH-DIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVVSDKRG 414 (511)
T ss_pred HHHHHHHHhhhhhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEEcccc
Confidence 4455566677777775 88888888888777777766554444444 4445569999998887765554444333 2
Q ss_pred hcccCcccccc---hHHHHHHHHHHHHHHHH
Q psy3469 79 YVIQGKPTQAA---WRVVFVAAAVVYLFSST 106 (154)
Q Consensus 79 ~i~~~~~~~~~---~~~~F~~~~~~~~i~~~ 106 (154)
.-++. ..+ |..-|.+.+.+.++..+
T Consensus 415 l~l~i---~~Qf~vY~~yf~~~~~i~~~~~~ 442 (511)
T TIGR00806 415 LGLQV---RKQFRIYSVYFLVLSIICFFGAG 442 (511)
T ss_pred cCCCc---eeEEEehhhHHHHHHHHHHHHHH
Confidence 22221 122 34456666666665544
No 233
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=92.24 E-value=0.23 Score=41.39 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 53 RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 53 ~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
++.+.=+|=...++++|-+++..++|++.+ .+-+..|++.....++..++..+.+
T Consensus 134 r~~~feYG~~R~wGSig~ai~s~~~G~L~~-----i~p~~~fwi~s~~~~il~lll~~~~ 188 (412)
T PF01306_consen 134 RRNGFEYGRARMWGSIGFAIASLLAGILFN-----INPNIIFWIASAAAIILLLLLLLLK 188 (412)
T ss_dssp HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred HHhcCCcchHHHHhhHHHHHHHHHhheeee-----eCccHHHHHHHHHHHHHHHHHHHcC
Confidence 445666888999999999999999999987 3456788876655554444433333
No 234
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=91.87 E-value=1.1 Score=37.07 Aligned_cols=99 Identities=12% Similarity=0.015 Sum_probs=45.6
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhh-hhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIA-GYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~-G~i~~ 82 (154)
+.+..++.++...... +.+..+.++.+...+.....+..-+...+... .++.-+|-+..+|.+|=+++.+.. +.+..
T Consensus 74 ~~l~~~~~~~~~~~~~-~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~-~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~ 151 (400)
T PF03825_consen 74 LSLLSALALLLLAFSS-SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG-DRGKDYGRIRLWGSIGFIVAALAFGGLLGG 151 (400)
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc-cccCCCCcchhhhhHHHHHHHHHHHHHHHh
Confidence 3444555555555443 54443333333333334444444444444332 345556666777777776665442 23322
Q ss_pred CcccccchHHHHHHHHHHHHHHH
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSS 105 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~ 105 (154)
. ....+....+++.+.+.++..
T Consensus 152 ~-~~~~~~~~~~~i~~~~~~ll~ 173 (400)
T PF03825_consen 152 Y-LGISGTSLIFYIAAILSLLLA 173 (400)
T ss_pred h-hccccccHHHHHHHHHHHHHH
Confidence 1 111223345555554444333
No 235
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=91.80 E-value=0.74 Score=38.61 Aligned_cols=79 Identities=11% Similarity=0.010 Sum_probs=39.8
Q ss_pred HHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 34 GFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 34 ~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.+.+...++.+.....+.|++.+....-...+|-++..+.-+.....-+..+...+-..-|.+.+++.+++.+.+..+.
T Consensus 118 ~~~~~~q~s~~gla~~fp~~~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~ 196 (437)
T TIGR00939 118 SGMALLQGSLFGLAGVFPSTYSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLP 196 (437)
T ss_pred hhhhhhcccchhhcccCCHHHHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3344545566666666666766555554445554444443333333322110112222345556666677777776654
No 236
>KOG3626|consensus
Probab=91.76 E-value=0.64 Score=41.49 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=30.7
Q ss_pred hhcccCcchHHHHHHHHHHHHH-HHHhHhhhhhhhcccC
Q psy3469 46 NHLDISPRFAGILMSFTNCLAN-LAGLLAPIIAGYVIQG 83 (154)
Q Consensus 46 ~~~d~~p~~~g~~~g~~~~~~~-lg~~i~P~i~G~i~~~ 83 (154)
.+.-+.|++|..+.|+..++-. +|.+-+|++-|+++|.
T Consensus 611 ~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 611 VLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred EEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 3333567999999999887764 5999999999999985
No 237
>KOG4112|consensus
Probab=91.43 E-value=0.94 Score=29.86 Aligned_cols=69 Identities=12% Similarity=0.299 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHH----HHHhccCCccCCCCCCCCCCCchhhhhhc
Q psy3469 61 FTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTF----YIFAASGDRQPWDNPNNDAPTPRAATKRD 136 (154)
Q Consensus 61 ~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~----~~~~~~~~~q~w~~~~~~~~~~~~~~~~~ 136 (154)
+....-.+++++|- +.|+..+ ++++..++.++-+++..++ |.+ -++++-.|.+|.++...+..++++.
T Consensus 27 ~~q~ilti~aiVg~-i~Gf~~Q------qls~tvy~vg~~~v~t~li~LPpwP~-y~rn~LkW~~Pa~esssdd~d~g~k 98 (101)
T KOG4112|consen 27 FQQLILTIGAIVGF-IYGFAQQ------QLSVTVYIVGAGFVFTLLITLPPWPW-YRRNPLKWAQPAIESSSDDKDKGTK 98 (101)
T ss_pred HHHHHHHHHHHHHH-HHHHHHH------HHHHHHHHHHHHHHHHHHhcCCCchh-hhcCcccccCCccccccccCCcccc
Confidence 33444444444433 4455544 3555444444333333332 223 3448889999988755544444333
Q ss_pred c
Q psy3469 137 A 137 (154)
Q Consensus 137 ~ 137 (154)
|
T Consensus 99 k 99 (101)
T KOG4112|consen 99 K 99 (101)
T ss_pred c
Confidence 3
No 238
>KOG0569|consensus
Probab=91.09 E-value=0.65 Score=39.57 Aligned_cols=72 Identities=7% Similarity=-0.036 Sum_probs=53.6
Q ss_pred hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469 41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q 117 (154)
+..|-+.+|+.| +.|..+.++..++.++.+++.....-.+.+. .++ +.|+...+.+++..+..++..++++.
T Consensus 387 pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~---~g~--~~filF~i~~~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 387 PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV---IGP--YVFILFVIPLAIFLIYLYRYLPETKG 459 (485)
T ss_pred chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc--hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence 456778999887 6799999999999999998887777666653 222 66777777777777766666666643
No 239
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=91.04 E-value=1.3 Score=36.91 Aligned_cols=98 Identities=11% Similarity=-0.014 Sum_probs=50.4
Q ss_pred hhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc
Q psy3469 6 YGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP 85 (154)
Q Consensus 6 ~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~ 85 (154)
+.+.+.+++.++.+ +.+..++..+++....|+.=..+-. .+...++. ..+.+++....++.+|+..--.+.+.
T Consensus 97 ~l~~~g~l~va~~~-~v~~~l~Gv~las~ssg~GE~tfL~-lt~~y~~~---~l~~wssGTG~aGl~Ga~~y~~lT~~-- 169 (402)
T PF02487_consen 97 ALSAAGMLLVAFSP-SVWVRLLGVVLASLSSGLGEVTFLS-LTHFYGKS---SLSAWSSGTGGAGLVGALYYLGLTTL-- 169 (402)
T ss_pred HHHHHHHhheeecc-chhHHHHHHHHHhhhhhhhHHHHHH-HHHhcCcc---ccccccCCcChhhHHHHHHHHHHHHh--
Confidence 34445555555544 5555555555554444443222222 23344432 34445555566777777665444431
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 86 TQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 86 ~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
..+.+..+..+..+.++-.+.+++.
T Consensus 170 -g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 170 -GLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred -CcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 2456777777776665555444433
No 240
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=90.38 E-value=4.9 Score=29.40 Aligned_cols=67 Identities=21% Similarity=0.339 Sum_probs=49.3
Q ss_pred HHhhhhhhhhhhcccCcc--hHHHHHHHHHH-HHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHH
Q psy3469 36 NGAVYSGFKVNHLDISPR--FAGILMSFTNC-LANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFS 104 (154)
Q Consensus 36 ~g~~~~~~~~~~~d~~p~--~~g~~~g~~~~-~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~ 104 (154)
.+...+.....+.|..|+ +++...+.... ...++..++|.+.+.+... ...+|+..|..........
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 108 GGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA--LLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred hHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHH
Confidence 344456677788888885 78999999888 6888999999888877763 3467888777665555444
No 241
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=90.36 E-value=1.8 Score=36.09 Aligned_cols=74 Identities=9% Similarity=0.225 Sum_probs=48.6
Q ss_pred hhhhhhcccCcc-hHHHHHHHHHHHHHHHHhHhhhhhhhcccCccc-c---cchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 42 GFKVNHLDISPR-FAGILMSFTNCLANLAGLLAPIIAGYVIQGKPT-Q---AAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 42 ~~~~~~~d~~p~-~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~-~---~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
+....+++++|+ .=|+.+|+..++.++|..++..++..+.+..+. . .+..+..+++..+.++...+..++-+++
T Consensus 338 P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~ 416 (433)
T PF03092_consen 338 PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQK 416 (433)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 344567788885 479999999999999999999998888664321 1 2233455556666655554443444333
No 242
>PRK09848 glucuronide transporter; Provisional
Probab=90.28 E-value=4.8 Score=33.14 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=25.7
Q ss_pred HHHhhhhhhhhhhcccC--cchHHHHHHHHHHHHH-----HHHhHhhhhhhhc
Q psy3469 35 FNGAVYSGFKVNHLDIS--PRFAGILMSFTNCLAN-----LAGLLAPIIAGYV 80 (154)
Q Consensus 35 ~~g~~~~~~~~~~~d~~--p~~~g~~~g~~~~~~~-----lg~~i~P~i~G~i 80 (154)
+.++...++.+...++. +++|....++....++ ++..++|.+.+..
T Consensus 122 ~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 122 CYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444455556555554 3568877776654333 4555666665543
No 243
>TIGR00901 2A0125 AmpG-related permease.
Probab=90.18 E-value=0.93 Score=35.86 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHH
Q psy3469 28 ILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLAN 67 (154)
Q Consensus 28 ~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~ 67 (154)
+..+..++.+...+...+.+++..| +++|+..|+.++..+
T Consensus 315 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 315 TITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 3334445556667778888999877 679999999887664
No 244
>KOG2816|consensus
Probab=89.36 E-value=1.9 Score=36.55 Aligned_cols=79 Identities=14% Similarity=0.309 Sum_probs=54.3
Q ss_pred ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccC-cchHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDIS-PRFAGILMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~-p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
+|+....+..+..++.. +.|.. ..-.+..++.....+...+...-+. ++++|.+.++...+..+.+.++|.+-+.+.
T Consensus 313 lGl~~~~~~~~~~af~~-~~w~~-~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 313 LGLLSEFLQLLLFAFAT-ETWMM-FAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred HHHHHHHHHHHHHHHhc-cchhh-hHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 35555556666666665 54432 2233333344555666777777754 588999999999999999999999999875
Q ss_pred cC
Q psy3469 82 QG 83 (154)
Q Consensus 82 ~~ 83 (154)
..
T Consensus 391 ~~ 392 (463)
T KOG2816|consen 391 AL 392 (463)
T ss_pred HH
Confidence 53
No 245
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=89.17 E-value=1 Score=28.55 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=31.2
Q ss_pred hHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHH---HHhccCCccCCCCCCCC
Q psy3469 71 LLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFY---IFAASGDRQPWDNPNND 125 (154)
Q Consensus 71 ~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~---~~~~~~~~q~w~~~~~~ 125 (154)
.+...+.|++.+ +.+..+++.++..+++.++. +-+.++++.+|.+|+.+
T Consensus 21 ~iisfi~Gy~~q------~~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p~~W~~~~~~ 72 (76)
T PF06645_consen 21 AIISFIVGYITQ------SFSYTFYIYGAGVVLTLLVVVPPWPFYNRHPLKWLPPKPE 72 (76)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhheeCCcHhhcCCcccCCCCCcc
Confidence 344567788876 36666666555555444432 23567888899988774
No 246
>KOG2533|consensus
Probab=88.34 E-value=2.4 Score=36.23 Aligned_cols=57 Identities=12% Similarity=-0.032 Sum_probs=29.4
Q ss_pred hhhhhhhcc-cCcc-hHHHHHHHHHHHHHHHHhHhhhh-hhhcccCcccccchHHHHHHHHHHH
Q psy3469 41 SGFKVNHLD-ISPR-FAGILMSFTNCLANLAGLLAPII-AGYVIQGKPTQAAWRVVFVAAAVVY 101 (154)
Q Consensus 41 ~~~~~~~~d-~~p~-~~g~~~g~~~~~~~lg~~i~P~i-~G~i~~~~~~~~~~~~~F~~~~~~~ 101 (154)
+....-..+ ..++ ++-+..++.....+.+++++|.+ .+.... ...|..+|.......
T Consensus 386 ~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap----~y~~~~~f~~~~~~~ 445 (495)
T KOG2533|consen 386 IIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAP----RYGWGAVFYMLVAAC 445 (495)
T ss_pred HHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCc----chhhhhHHHHHHHHH
Confidence 334444455 3443 35555555555556666666555 333333 257888884443333
No 247
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.23 E-value=3.2 Score=28.22 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=27.8
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469 52 PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGK 84 (154)
Q Consensus 52 p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~ 84 (154)
++.++.+.++--..-.+++.+.....||++|++
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355788888888888999999999999999974
No 248
>KOG0254|consensus
Probab=87.75 E-value=5.2 Score=33.84 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=47.6
Q ss_pred hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH-HHHHhccCCc
Q psy3469 41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST-FYIFAASGDR 116 (154)
Q Consensus 41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~-~~~~~~~~~~ 116 (154)
+..|....|..| +.|+.+.++.....++.+++.....-.+... .++...|...+++..+..+ +..++.++++
T Consensus 414 ~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~----~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 414 PVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEA----LGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred cchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh----ccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 456678888998 6799999999999988887775554444442 2234556666666666665 4545554443
No 249
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=86.08 E-value=17 Score=30.63 Aligned_cols=56 Identities=20% Similarity=0.135 Sum_probs=43.6
Q ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 52 PRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 52 p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
|+.....++.+.-+-.+..+++|+++|.+.+. .+......+.++..+++...=.++
T Consensus 144 ~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~----~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 144 PGALARMNATMRRIDLFCKLLAPLFVGLLMTF----ASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577778888888889999999999999884 667777777777777776654444
No 250
>KOG0252|consensus
Probab=84.69 E-value=0.47 Score=40.37 Aligned_cols=65 Identities=8% Similarity=-0.035 Sum_probs=35.2
Q ss_pred chhHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHhhh----hhhhhhhcccCc-chHHHHHHHHHHHHHHH
Q psy3469 5 QYGPAVCLVAASYTGC--DPYLTVGILTIGLGFNGAVY----SGFKVNHLDISP-RFAGILMSFTNCLANLA 69 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~----~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg 69 (154)
++++.++.++.....+ .+.-.+..+++.-+..|... |...+..+|.+- +.||...+..-..+.+|
T Consensus 121 liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~G 192 (538)
T KOG0252|consen 121 LIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFG 192 (538)
T ss_pred HHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchh
Confidence 4444455444433322 22345566666666666664 444456666665 55888877654444443
No 251
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=82.68 E-value=12 Score=32.12 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=37.6
Q ss_pred hhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 42 GFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 42 ~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
.+|...-|+.. ++..+-+++.+..++++..++..+.+++...
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 68888889876 7899999999999999999999999998763
No 252
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=81.62 E-value=0.45 Score=37.75 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 35 FNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 35 ~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
+.+..++..+.....+.|++......-.+..|-+...+. ++.-...+. ...+-..-|.+..++.+++.+.+..+.+
T Consensus 10 ~~~~~q~s~~glas~~p~~y~~a~~~Gq~~aGv~~s~l~-ii~~~~~~~--~~~~a~~yF~~a~~i~i~~~~~~~~l~~ 85 (309)
T PF01733_consen 10 ANAVLQSSLFGLASLFPPKYTQAVMIGQGLAGVIVSLLR-IITKASGSD--VKTSAFIYFIIAVLIVILCIILYFILPR 85 (309)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred hhHHHhccHHHHHhcCCHHHHHHHHhhccHHHHHHHHHH-HHHHHhhhc--cchhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 445556666777777777775444433333332222211 122222221 1122333455555666666666665543
No 253
>PF12832 MFS_1_like: MFS_1 like family
Probab=79.10 E-value=12 Score=23.46 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 55 AGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 55 ~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
...-+|+...+..+..+++|++.|.+.|.
T Consensus 33 ~~~~iGil~~i~~~~~~~~~pl~g~laDk 61 (77)
T PF12832_consen 33 SPSQIGILSAIRPLIRFLAPPLWGFLADK 61 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667777889999999999995
No 254
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=77.97 E-value=19 Score=28.13 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhHhhhhhh
Q psy3469 59 MSFTNCLANLAGLLAPIIAG 78 (154)
Q Consensus 59 ~g~~~~~~~lg~~i~P~i~G 78 (154)
.|+....++..+.+..+..|
T Consensus 81 Lglg~liW~s~n~l~Gw~~g 100 (254)
T PF07857_consen 81 LGLGMLIWGSVNCLTGWASG 100 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 33334555555555555555
No 255
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=76.39 E-value=5.4 Score=33.57 Aligned_cols=111 Identities=11% Similarity=0.021 Sum_probs=71.9
Q ss_pred hhHHHHHHHHhhcCC-Ch-hHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhh--hhc
Q psy3469 6 YGPAVCLVAASYTGC-DP-YLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIA--GYV 80 (154)
Q Consensus 6 ~~~ai~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~--G~i 80 (154)
.+..++++.+.+.+. +. +..+.++.++..+.....-.+.+.+.|+.+ +..+...++....+++|+.+.=++. +.+
T Consensus 97 ~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~ 176 (438)
T COG2270 97 AIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFA 176 (438)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHh
Confidence 344556666677663 23 445555566665555555567788888876 5688888888888888888765553 111
Q ss_pred ccC------------cccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 81 IQG------------KPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 81 ~~~------------~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
... ......-|.++.++++-.++-.+..++..++.+
T Consensus 177 ~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~ 224 (438)
T COG2270 177 LGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAE 224 (438)
T ss_pred cccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccc
Confidence 110 002244678899999988888888777765544
No 256
>KOG0253|consensus
Probab=75.17 E-value=9.6 Score=32.15 Aligned_cols=61 Identities=15% Similarity=0.298 Sum_probs=37.4
Q ss_pred hhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHH
Q psy3469 42 GFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 42 ~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~ 107 (154)
...+.-.+..| .+|+.-+=+. ++..+|..+...+.=.+.. ..|||+....++..+.+.+.+
T Consensus 185 v~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~----~~gwr~~l~~~~~pl~~~a~f 246 (528)
T KOG0253|consen 185 VDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS----NFGWRYLLFTSSTPLMFAARF 246 (528)
T ss_pred HhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHhHHHHHHHH
Confidence 33345556667 4566555444 7777888887766544444 268999877776444444443
No 257
>KOG2563|consensus
Probab=74.31 E-value=17 Score=31.06 Aligned_cols=53 Identities=15% Similarity=0.451 Sum_probs=41.2
Q ss_pred cCcc-hHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHH
Q psy3469 50 ISPR-FAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSS 105 (154)
Q Consensus 50 ~~p~-~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~ 105 (154)
+.|+ +-+...|.......++++++..+.|.+.|. +..|+-.-.+.....+++.
T Consensus 293 l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dk---tk~fk~~~~v~~~~~~v~~ 346 (480)
T KOG2563|consen 293 LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADK---TKKFKLTTLVLYLFALVGT 346 (480)
T ss_pred cccccCCccccchhHHHHHHHHHHHHHHHHhhhhh---hhhHHHHHHHHHHHHHHHH
Confidence 5564 466889999999999999999999999995 5677776666666655553
No 258
>KOG2563|consensus
Probab=74.22 E-value=20 Score=30.65 Aligned_cols=65 Identities=9% Similarity=0.187 Sum_probs=42.7
Q ss_pred CcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc--cccchHH--HHHHHHHHHHHHHHHHHHhccCC
Q psy3469 51 SPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP--TQAAWRV--VFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 51 ~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~--~~~~~~~--~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
.|++|+++..+..+...+|.+++-++.-.++...+ ....|.. .|+..+++..+..+...+.++++
T Consensus 170 ~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~ 238 (480)
T KOG2563|consen 170 PPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKK 238 (480)
T ss_pred CcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46899999999988888888888887777776531 1344544 45555555555555554555443
No 259
>KOG3810|consensus
Probab=72.43 E-value=9.2 Score=31.79 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=65.5
Q ss_pred ccchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhc-ccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 3 LGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHL-DISPRFAGILMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 3 ig~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~-d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
++.+..+.+++.+..+. +.|.......+.....++........++ ++..+.-|.+.|+..+++-+ +=.++.-.+.
T Consensus 308 ~~s~~~agllf~m~~t~-~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~---lQsilT~iVv 383 (433)
T KOG3810|consen 308 VGSAVQAGLLFIMAQTQ-HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALI---LQSILTLIVV 383 (433)
T ss_pred HHHHHhhhhhhhhhccc-ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHH---HHHhheEEEE
Confidence 34556666777777765 7777777777666666665544433333 35567789999988776644 3344444445
Q ss_pred cCcc-----c-c-cchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469 82 QGKP-----T-Q-AAWRVVFVAAAVVYLFSSTFYIFAASG 114 (154)
Q Consensus 82 ~~~~-----~-~-~~~~~~F~~~~~~~~i~~~~~~~~~~~ 114 (154)
|..+ + + .=|..-|++.+++.+++........++
T Consensus 384 d~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~ 423 (433)
T KOG3810|consen 384 DDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLMCRR 423 (433)
T ss_pred cccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHHhhc
Confidence 5211 1 1 114456888888888887765554433
No 260
>KOG2325|consensus
Probab=72.04 E-value=1.4 Score=37.63 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=54.2
Q ss_pred hhhhcc-cCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 44 KVNHLD-ISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 44 ~~~~~d-~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
.+.-++ +.|++.++..|+++..+.++..++|++.-.+... .++++++.+.++..++....+.++.++.
T Consensus 410 ~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~----~g~~~v~~~~~~~~l~~~~l~~~~~~r~ 478 (488)
T KOG2325|consen 410 DTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL----SGPRPVWIILLCLLLVVAALWIVFLKRL 478 (488)
T ss_pred HHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh----cCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555 5689999999999999999999999998888774 6788888888887777777776665443
No 261
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=71.39 E-value=2.9 Score=25.08 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
-+||...++.+.+.++++.++.+..+..
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Ypi~~~Pm 30 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALYPIYFRPM 30 (58)
T ss_pred ccccchhhHHHHHHHHHHHHhhhhcccc
Confidence 3699999999999999999998887543
No 262
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=70.75 E-value=19 Score=31.59 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=30.9
Q ss_pred hhcccCcchHHHHHHHHHHHHHH-HHhHhhhhhhhcccC
Q psy3469 46 NHLDISPRFAGILMSFTNCLANL-AGLLAPIIAGYVIQG 83 (154)
Q Consensus 46 ~~~d~~p~~~g~~~g~~~~~~~l-g~~i~P~i~G~i~~~ 83 (154)
.+.-+.|++|..+.|+..++-.+ |.+=+|++.|++.|.
T Consensus 543 ~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 543 LLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDV 581 (633)
T ss_pred EeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhc
Confidence 33345568899999998877755 889999999999985
No 263
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=70.04 E-value=13 Score=21.64 Aligned_cols=29 Identities=3% Similarity=0.080 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCccCCCC
Q psy3469 93 VFVAAAVVYLFSSTFYIFAASGDRQPWDN 121 (154)
Q Consensus 93 ~F~~~~~~~~i~~~~~~~~~~~~~q~w~~ 121 (154)
.|++..++.+++.+.+.+....+...+.-
T Consensus 3 ~~~iV~i~iv~~lLg~~I~~~~K~ygYkh 31 (50)
T PF12606_consen 3 AFLIVSIFIVMGLLGLSICTTLKAYGYKH 31 (50)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 35555666666666666655444444443
No 264
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=69.76 E-value=30 Score=24.80 Aligned_cols=23 Identities=4% Similarity=-0.016 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhh
Q psy3469 55 AGILMSFTNCLANLAGLLAPIIA 77 (154)
Q Consensus 55 ~g~~~g~~~~~~~lg~~i~P~i~ 77 (154)
+++..|+...+.+.+.++|.++.
T Consensus 123 ~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 123 IGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444444444443
No 265
>PRK14774 lipoprotein signal peptidase; Provisional
Probab=69.54 E-value=33 Score=25.45 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=26.6
Q ss_pred HHHHHHHhHhhhhhhhcccCccc-ccc--hHHHHHHHHHHHHHHHHHHHHh
Q psy3469 64 CLANLAGLLAPIIAGYVIQGKPT-QAA--WRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 64 ~~~~lg~~i~P~i~G~i~~~~~~-~~~--~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
..+.+|+++-=+.-|+++|.-.- ..+ |..+|=+.-....+|.++.++.
T Consensus 99 lgGAlGNliDRi~~G~VvDFi~~~~~~~~~p~vFNvAD~~I~iGv~llii~ 149 (185)
T PRK14774 99 IGGALGNVVDRVLYGAVADFLNMSCCGIENPYAFNVADIAIFAGAFGLVLF 149 (185)
T ss_pred HHHHHHHHHHHhhcCCeEEEEEEeecCccCCCEEEHHHHHHHHHHHHHHHH
Confidence 55677888888888888885211 112 2225544445555554444443
No 266
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=69.07 E-value=3.7 Score=32.33 Aligned_cols=28 Identities=11% Similarity=0.356 Sum_probs=24.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccC
Q psy3469 87 QAAWRVVFVAAAVVYLFSSTFYIFAASG 114 (154)
Q Consensus 87 ~~~~~~~F~~~~~~~~i~~~~~~~~~~~ 114 (154)
+.+|+.++.+.+++.++-.+.+.+++++
T Consensus 37 ~~~W~~I~si~~lL~~IpLIly~ifGk~ 64 (267)
T PF07672_consen 37 TNNWQWILSIFILLIFIPLILYIIFGKN 64 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3569999999999999999999999754
No 267
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=64.06 E-value=13 Score=28.31 Aligned_cols=16 Identities=19% Similarity=0.571 Sum_probs=10.6
Q ss_pred ccCCCCCCCCCCCchh
Q psy3469 116 RQPWDNPNNDAPTPRA 131 (154)
Q Consensus 116 ~q~w~~~~~~~~~~~~ 131 (154)
..+|-.|+.+++|...
T Consensus 79 ~~e~~tPn~~nkq~k~ 94 (221)
T PF08374_consen 79 NSEWVTPNQENKQKKK 94 (221)
T ss_pred cccccCCCccchhhcc
Confidence 4588888777666433
No 268
>PRK11715 inner membrane protein; Provisional
Probab=63.58 E-value=39 Score=28.62 Aligned_cols=53 Identities=11% Similarity=0.215 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 53 RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 53 ~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
+|.|...+..-.+..+-..++-.+.+.+ .+|+....+.+.+..+-++++.++.
T Consensus 353 EHigF~~AYliAa~a~v~li~~Y~~~vl-------~~~k~g~~~~~~L~~LYg~Ly~lLq 405 (436)
T PRK11715 353 EHIGFTLAYLIAALACVLLIGFYLSAVL-------RSWKRGLLFAAALAALYGVLYGLLQ 405 (436)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444444444444333 3466666666666655555555544
No 269
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=63.18 E-value=12 Score=28.04 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 89 AWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 89 ~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
.|-..|-+.+.+++++.+....+.++++
T Consensus 142 ~y~l~fe~~silLLvAmIGAI~La~~~~ 169 (198)
T PRK06638 142 DYLLPFELASVLLLVAMVGAIVLARRER 169 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4777899999999999888888876543
No 270
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=61.86 E-value=54 Score=27.72 Aligned_cols=62 Identities=15% Similarity=0.336 Sum_probs=31.0
Q ss_pred hhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 43 FKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 43 ~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
+|..+..+. +|.|...+..-....+-..++-.+.+.+ .+|+....+.+.+.++-.+++.++.
T Consensus 338 FYlLLLSlS-Ehi~F~~AYliAa~a~i~Li~~Y~~~vl-------~~~k~~~~~~~~L~~LY~~Ly~lLq 399 (430)
T PF06123_consen 338 FYLLLLSLS-EHIGFNLAYLIAALACIGLISLYLSSVL-------KSWKRGLIFAGLLAALYGFLYVLLQ 399 (430)
T ss_pred HHHHHHHHH-hhhchHHHHHHHHHHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHHHHHHHHHH
Confidence 443333333 5555555544444444444444443333 3466666666666666666555544
No 271
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=61.04 E-value=25 Score=21.85 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q psy3469 89 AWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 89 ~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
|...+|.++.++.++-.++-.+
T Consensus 11 Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 11 GMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566555554444443333
No 272
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=60.88 E-value=75 Score=27.44 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=41.2
Q ss_pred hhhhhhhcccCcc-hHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc--cccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 41 SGFKVNHLDISPR-FAGILMSFTNCLANLAGLLAPIIAGYVIQGKP--TQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 41 ~~~~~~~~d~~p~-~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~--~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
+..-+.++.+.|+ ..+..+|++-..-..|..++..+.+.-.+... +.......|+.++.+.++..+.....
T Consensus 413 pvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 413 PVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 4445567777874 47777777766666666665555552111100 12445667888887776666554443
No 273
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=60.65 E-value=8.8 Score=27.30 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=16.5
Q ss_pred HHHHHHHHhHhhhhhhhccc
Q psy3469 63 NCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 63 ~~~~~lg~~i~P~i~G~i~~ 82 (154)
....+++-++-|..+|.+..
T Consensus 64 ~LL~~m~LfFVPagVGim~~ 83 (141)
T PRK04125 64 ALTNNIGFLFVPSGISVINS 83 (141)
T ss_pred HHHHHHHHHHhhhHhHHHHh
Confidence 44578899999999998865
No 274
>KOG0637|consensus
Probab=60.50 E-value=30 Score=29.71 Aligned_cols=58 Identities=9% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHh----hhhhhhhhhcccC-cchHHH-HHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 24 LTVGILTIGLGFNGA----VYSGFKVNHLDIS-PRFAGI-LMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 24 ~~~~~l~~~~~~~g~----~~~~~~~~~~d~~-p~~~g~-~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
.++.++.++.-+..+ .+++.-+.+.|+. ++.+.+ +.++..++..+|+.+|-.+.+++-
T Consensus 140 rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~ 203 (498)
T KOG0637|consen 140 RAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLG 203 (498)
T ss_pred HHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccC
Confidence 455555555554333 3566778999976 444444 999999999999999988877553
No 275
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=60.43 E-value=18 Score=23.40 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 90 WRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 90 ~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
-|+..++.+++.+++.+..++..
T Consensus 22 lRYGLf~GAIFQliCilAiI~~~ 44 (85)
T PF06783_consen 22 LRYGLFVGAIFQLICILAIILPI 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHheeeec
Confidence 46778888999999988777753
No 276
>PRK11246 hypothetical protein; Provisional
Probab=58.15 E-value=28 Score=26.63 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCC
Q psy3469 91 RVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNN 124 (154)
Q Consensus 91 ~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~~ 124 (154)
+....+.....++|.++...+.+.++..|-+.++
T Consensus 163 ~~~r~Mll~al~iG~lL~~~l~~~~~~~~~~~~~ 196 (218)
T PRK11246 163 NILRLMLLLALAIGIVLTRTLLQGKRTRWQQSPF 196 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccCce
Confidence 4456667777788888888888888889988666
No 277
>PRK14778 lipoprotein signal peptidase; Provisional
Probab=57.92 E-value=11 Score=28.09 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=15.5
Q ss_pred HHHHHHHhHhhhhhhhcccC
Q psy3469 64 CLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 64 ~~~~lg~~i~P~i~G~i~~~ 83 (154)
..+.+|+++-=+.-|+++|.
T Consensus 87 lGGAlGNliDRl~~G~VvDF 106 (186)
T PRK14778 87 LGGALGNLLDRIRFGYVLDF 106 (186)
T ss_pred HHHHHhhHHHHhhcCceEEE
Confidence 45677888888888998885
No 278
>PF14851 FAM176: FAM176 family
Probab=56.49 E-value=30 Score=24.93 Aligned_cols=8 Identities=13% Similarity=0.505 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q psy3469 93 VFVAAAVV 100 (154)
Q Consensus 93 ~F~~~~~~ 100 (154)
.|++++++
T Consensus 24 LYFv~gVC 31 (153)
T PF14851_consen 24 LYFVSGVC 31 (153)
T ss_pred HHHHHHHH
Confidence 34444443
No 279
>PRK03427 cell division protein ZipA; Provisional
Probab=55.81 E-value=23 Score=28.84 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469 89 AWRVVFVAAAVVYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 89 ~~~~~F~~~~~~~~i~~~~~~~~~~~~~q 117 (154)
..|.+.++.|++.++++++=-++..++.+
T Consensus 4 dLrLiLivvGAIAIiAlL~HGlWtsRKer 32 (333)
T PRK03427 4 DLRLILIIVGAIAIIALLVHGFWTSRKER 32 (333)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhccccc
Confidence 46888999999999998887777655554
No 280
>PHA03049 IMV membrane protein; Provisional
Probab=55.77 E-value=30 Score=21.30 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCccCCCCCC
Q psy3469 94 FVAAAVVYLFSSTFYIFAASGDRQPWDNPN 123 (154)
Q Consensus 94 F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~ 123 (154)
+.+..++.+++++++-+..+.+...-+.|+
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~~~q~~~p~ 35 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKTTTSQNPPS 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCC
Confidence 444556677788888887766655444443
No 281
>PTZ00370 STEVOR; Provisional
Probab=55.48 E-value=30 Score=27.61 Aligned_cols=33 Identities=9% Similarity=0.366 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCccCCCC
Q psy3469 89 AWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDN 121 (154)
Q Consensus 89 ~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~ 121 (154)
.|..+-+++-++.++..++++++.+++..+|..
T Consensus 256 Pygiaalvllil~vvliilYiwlyrrRK~swkh 288 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWLYRRRKNSWKH 288 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 355666666666667777787888888888854
No 282
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=55.48 E-value=31 Score=27.88 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=7.5
Q ss_pred HHHHHHhHhhhhhhhc
Q psy3469 65 LANLAGLLAPIIAGYV 80 (154)
Q Consensus 65 ~~~lg~~i~P~i~G~i 80 (154)
.++.+.+=-|++....
T Consensus 103 ~~N~~~lglpi~~~l~ 118 (385)
T PF03547_consen 103 FGNTGFLGLPILQALF 118 (385)
T ss_pred CCcchhhHHHHHHHHh
Confidence 4455544445444444
No 283
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=55.22 E-value=31 Score=21.32 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCccCCCCCC
Q psy3469 94 FVAAAVVYLFSSTFYIFAASGDRQPWDNPN 123 (154)
Q Consensus 94 F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~ 123 (154)
.++..++.+++++++.+..+.+...-..|+
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~~q~~~~~ 35 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKTTQNTNPS 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCc
Confidence 344455667777777777665544333333
No 284
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=55.08 E-value=43 Score=24.15 Aligned_cols=49 Identities=12% Similarity=0.004 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcc-cCcchHHHHHHHHHHHHHHHHhHh
Q psy3469 24 LTVGILTIGLGFNGAVYSGFKVNHLD-ISPRFAGILMSFTNCLANLAGLLA 73 (154)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~~~~~~~~d-~~p~~~g~~~g~~~~~~~lg~~i~ 73 (154)
++.++.++..++.|+ .+..|.+++. ..|++-|+..|+-.+-.+++.+..
T Consensus 97 ~~~~~~S~~~Fg~gl-lGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~~ 146 (153)
T PF11947_consen 97 WAVLLVSLVFFGLGL-LGISYGILSASWDPEREGSLLGWEEFKRNWGRMWE 146 (153)
T ss_pred hHHHHHHHHHHHHHH-HhhhhhhcccccCCCCCCCcccHHHHHHhHHHHHH
Confidence 344555555555554 3445554444 778889999999998888877653
No 285
>KOG1623|consensus
Probab=52.77 E-value=68 Score=24.98 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=15.6
Q ss_pred cCcchHHHHHHHHHHHHHHHHhHhhhh
Q psy3469 50 ISPRFAGILMSFTNCLANLAGLLAPII 76 (154)
Q Consensus 50 ~~p~~~g~~~g~~~~~~~lg~~i~P~i 76 (154)
-.+++|-...|++-..-++...-+|+-
T Consensus 119 ~~~~~~~~~lG~vc~~~nI~~~~sPL~ 145 (243)
T KOG1623|consen 119 HDPERRVSVLGIVCAVFNISMFAAPLS 145 (243)
T ss_pred CCcceeeeeeehhhhhhhHHhhhccHH
Confidence 334555556666666666666666654
No 286
>PF14851 FAM176: FAM176 family
Probab=52.75 E-value=40 Score=24.33 Aligned_cols=16 Identities=6% Similarity=0.075 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhc
Q psy3469 97 AAVVYLFSSTFYIFAA 112 (154)
Q Consensus 97 ~~~~~~i~~~~~~~~~ 112 (154)
.|+++.++++..-+..
T Consensus 32 ~GLlLtLcllV~risc 47 (153)
T PF14851_consen 32 AGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHhhhee
Confidence 3444445555444444
No 287
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=52.01 E-value=56 Score=22.68 Aligned_cols=16 Identities=19% Similarity=0.059 Sum_probs=9.4
Q ss_pred HHHHhHhhhhhhhccc
Q psy3469 67 NLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 67 ~lg~~i~P~i~G~i~~ 82 (154)
..|..+--...|.+.-
T Consensus 67 ~~GRGlfyif~G~l~~ 82 (136)
T PF08507_consen 67 YIGRGLFYIFLGTLCL 82 (136)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666666654
No 288
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=50.82 E-value=8.7 Score=25.77 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=24.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcc-CCccCCCCCC
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYIFAAS-GDRQPWDNPN 123 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~~~~~-~~~q~w~~~~ 123 (154)
.+|..+|++.-.+.++...+++.+.+ ...++|.+.+
T Consensus 57 e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~WA~rE 93 (105)
T PF10183_consen 57 EGWELPFFFGFSGSLVFGGVFLAYKPDTSIQTWARRE 93 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 67888888877776666666666664 3447887643
No 289
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=49.88 E-value=91 Score=26.09 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=35.0
Q ss_pred HHHHHHHHHH-HHhhhhhhhhhhcc-cCcchHHHHHHHHHHHHHHHHhHhhhhhhhc
Q psy3469 26 VGILTIGLGF-NGAVYSGFKVNHLD-ISPRFAGILMSFTNCLANLAGLLAPIIAGYV 80 (154)
Q Consensus 26 ~~~l~~~~~~-~g~~~~~~~~~~~d-~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i 80 (154)
++.+++..++ -|..+-..+..+.| ..|++|..+.|..+..-.+|-.++..++-.+
T Consensus 338 vf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 338 VFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444444444 34444444445555 5568899999999998888888877665443
No 290
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=48.81 E-value=79 Score=26.97 Aligned_cols=10 Identities=0% Similarity=-0.147 Sum_probs=4.4
Q ss_pred CCcccCcccc
Q psy3469 141 NRTSYASDVE 150 (154)
Q Consensus 141 ~~~~~~~~~~ 150 (154)
++....||+|
T Consensus 489 ~~~~~~~~~~ 498 (507)
T TIGR00910 489 PAARGEHHII 498 (507)
T ss_pred CCCCccCCcc
Confidence 4444444444
No 291
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=48.33 E-value=1.7e+02 Score=24.73 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=38.8
Q ss_pred hhhhhcccCcch---HHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 43 FKVNHLDISPRF---AGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 43 ~~~~~~d~~p~~---~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
....++|.-|+. .+.+.+.+.+.-....+..-+ ..---....+..+++..-.+.+.+..+..+.+.-++..+.
T Consensus 233 v~p~Vqe~~p~sgLLqssvv~~Y~~yL~~SAlss~P-~~~CNp~~~~~~~~~~~~~iig~i~~~~~v~yss~ra~~~ 308 (429)
T PF03348_consen 233 VLPKVQEANPRSGLLQSSVVSLYTTYLTWSALSSEP-DKECNPSGSRSGSWNTWQSIIGLIFTFVSVLYSSFRASSS 308 (429)
T ss_pred hhhhhhhcCCCcccccHHHHHHHHHHHHHHHHHcCC-CcccCCcccccCCcchHHHHHHHHHHHHHHHHhccccccc
Confidence 344567766642 566666666655554444432 1111110012355666677777777777776766654443
No 292
>KOG3098|consensus
Probab=48.17 E-value=89 Score=26.67 Aligned_cols=35 Identities=14% Similarity=-0.042 Sum_probs=22.1
Q ss_pred hhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhh
Q psy3469 40 YSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAP 74 (154)
Q Consensus 40 ~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P 74 (154)
....+.++.+..|+.|..+.++..+-..++..++-
T Consensus 371 ~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~ 405 (461)
T KOG3098|consen 371 NTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAF 405 (461)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence 34556677887787777666666666655555433
No 293
>KOG3098|consensus
Probab=46.92 E-value=1.4e+02 Score=25.46 Aligned_cols=38 Identities=13% Similarity=-0.082 Sum_probs=29.2
Q ss_pred hhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 45 VNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 45 ~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
.++++..+ +.+.+..++...+.+.+.++|..+.-.+..
T Consensus 125 ~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~ 163 (461)
T KOG3098|consen 125 GYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQ 163 (461)
T ss_pred eehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence 47777665 558999999999999999888766655543
No 294
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=46.70 E-value=10 Score=32.14 Aligned_cols=29 Identities=14% Similarity=0.297 Sum_probs=16.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHH-HhccCCcc
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYI-FAASGDRQ 117 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~-~~~~~~~q 117 (154)
++|+...+-. .+.+++.++|+ |++-.+++
T Consensus 404 g~~~~~ilq~-v~lvi~~lIY~PFvK~~dk~ 433 (452)
T PRK10297 404 GSVAALLVAL-FNLGIATLIYLPFVVVANKA 433 (452)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 6788877655 44445544444 44444444
No 295
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=46.51 E-value=94 Score=22.65 Aligned_cols=61 Identities=18% Similarity=0.330 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccCC
Q psy3469 59 MSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPW 119 (154)
Q Consensus 59 ~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w 119 (154)
.|+.-.++.+.+.+.-++..++...++....|..+-.+.--++++..-+.+.+++....+|
T Consensus 105 igf~l~fggl~~s~~vli~~yv~~~~~~~~~~~Gva~vlqN~lI~~Sslvl~~~r~~ed~y 165 (166)
T PF05255_consen 105 IGFALSFGGLAGSVWVLILKYVVPQYTKPTLWPGVANVLQNALIFLSSLVLWFGRNTEDEY 165 (166)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCCCcccccHHHHHHHHHHHHHHHHHhcccccccC
Confidence 6667777777777777777888774223344655444443333333333444554333344
No 296
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=45.04 E-value=49 Score=21.78 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy3469 90 WRVVFVAAAVVYLFSSTFY 108 (154)
Q Consensus 90 ~~~~F~~~~~~~~i~~~~~ 108 (154)
.+++++.|.+.+++|.++.
T Consensus 2 ~kw~l~Lc~~SF~~G~lft 20 (95)
T PF13334_consen 2 RKWVLLLCIASFCAGMLFT 20 (95)
T ss_pred chHHHHHHHHHHHHHHHHh
Confidence 4567776766666665543
No 297
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=44.63 E-value=1.5e+02 Score=24.58 Aligned_cols=23 Identities=9% Similarity=-0.062 Sum_probs=12.0
Q ss_pred hhhhhhhhcccC-----cchHHHHHHHH
Q psy3469 40 YSGFKVNHLDIS-----PRFAGILMSFT 62 (154)
Q Consensus 40 ~~~~~~~~~d~~-----p~~~g~~~g~~ 62 (154)
.+..|-.+.|.. +-..|...|..
T Consensus 252 l~ii~~i~~E~~L~~Yv~v~~G~~~G~l 279 (374)
T PF01528_consen 252 LSIIYLIVIEVVLARYVKVQFGPHLGTL 279 (374)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 355676777732 23345555544
No 298
>PF15050 SCIMP: SCIMP protein
Probab=44.18 E-value=46 Score=23.06 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCchh
Q psy3469 118 PWDNPNNDAPTPRA 131 (154)
Q Consensus 118 ~w~~~~~~~~~~~~ 131 (154)
+-++|-++..++.+
T Consensus 42 eiakp~k~~~rdeE 55 (133)
T PF15050_consen 42 EIAKPLKQKQRDEE 55 (133)
T ss_pred eeccchhhhcccHH
Confidence 44455555433333
No 299
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=44.14 E-value=56 Score=27.43 Aligned_cols=89 Identities=9% Similarity=-0.000 Sum_probs=47.7
Q ss_pred HHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCccccc-chHHHHHHHHHHHHHHHHHHHHh
Q psy3469 33 LGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQA-AWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 33 ~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~-~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
.+..+...+......--+....=...++.+.....++|.++..+-=......+++. -....+.......++..+.+..+
T Consensus 113 v~~~g~~~~~~q~s~~gla~~fp~~~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~ 192 (437)
T TIGR00939 113 VVIINSGMALLQGSLFGLAGVFPSTYSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCY 192 (437)
T ss_pred HHHHHhhhhhhcccchhhcccCCHHHHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 33344443333333333333334455666666666677666555322222111111 34457777777777778887778
Q ss_pred ccCCccCCCC
Q psy3469 112 ASGDRQPWDN 121 (154)
Q Consensus 112 ~~~~~q~w~~ 121 (154)
..-.+.++.+
T Consensus 193 ~~l~k~~~~~ 202 (437)
T TIGR00939 193 LLLPKLPFAR 202 (437)
T ss_pred HHHhcCHHHH
Confidence 8777766554
No 300
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=43.68 E-value=1.1e+02 Score=26.78 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCccCCCCCCC
Q psy3469 94 FVAAAVVYLFSSTFYIFAASGDRQPWDNPNN 124 (154)
Q Consensus 94 F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~~ 124 (154)
..+-+.+.++..+...++.++++..-..|+.
T Consensus 203 l~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~ 233 (544)
T PF13000_consen 203 LKFWGWVFLIVTILVAFFKKEKPHSESLPKI 233 (544)
T ss_pred HHHHHHHHHHHHHHHheEeecccccccCccc
Confidence 4444566666666555666666544444443
No 301
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=43.52 E-value=35 Score=22.62 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=11.0
Q ss_pred ccchHHHHHHHHHHHHHHHH
Q psy3469 87 QAAWRVVFVAAAVVYLFSST 106 (154)
Q Consensus 87 ~~~~~~~F~~~~~~~~i~~~ 106 (154)
.+-||..-++++.+.+..++
T Consensus 46 sh~WRN~GIli~f~i~f~~~ 65 (103)
T PF06422_consen 46 SHRWRNFGILIAFWIFFIVL 65 (103)
T ss_pred cchhhhHHHHHHHHHHHHHH
Confidence 35688765555555444333
No 302
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=43.08 E-value=1.4e+02 Score=22.33 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 92 VVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 92 ~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
..|-+.+++.+.....-.+.++.+.
T Consensus 70 ~af~IaGGiiL~~ia~~ml~~~~~~ 94 (203)
T PF01914_consen 70 PAFRIAGGIILFLIALEMLFGSPSS 94 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 3566666666555444444444443
No 303
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.11 E-value=27 Score=24.21 Aligned_cols=9 Identities=33% Similarity=0.298 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy3469 93 VFVAAAVVY 101 (154)
Q Consensus 93 ~F~~~~~~~ 101 (154)
+|.+++++.
T Consensus 70 i~gv~aGvI 78 (122)
T PF01102_consen 70 IFGVMAGVI 78 (122)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 344444443
No 304
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=42.06 E-value=1.5e+02 Score=23.04 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 59 MSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 59 ~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.....+++++|..+| ++.|.+.|+ .+-+.+..+.+...++|-...++..
T Consensus 39 l~~l~~~~~~G~~~G-~~~G~l~d~----~gp~~~l~iG~~~~~~GY~~~~l~~ 87 (250)
T PF06813_consen 39 LNTLSTAGDIGSYFG-ILAGLLYDR----FGPWVVLLIGAVLGFVGYGLLWLAV 87 (250)
T ss_pred HHHHHHHHHHHhhcc-HHHHHHHHh----cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777765 667888885 4445556666666666654444443
No 305
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=39.36 E-value=19 Score=23.29 Aligned_cols=11 Identities=18% Similarity=-0.142 Sum_probs=5.2
Q ss_pred hhhhhcccCcc
Q psy3469 43 FKVNHLDISPR 53 (154)
Q Consensus 43 ~~~~~~d~~p~ 53 (154)
......|...+
T Consensus 17 ~~g~~~d~~g~ 27 (141)
T TIGR00880 17 LSGLLTDRFGR 27 (141)
T ss_pred hHHHHHhhcch
Confidence 33455565443
No 306
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=39.35 E-value=9.9 Score=32.83 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhhhhcccCcchHHHHHHHHHHHHH-HHHhHhhhhhhhcccC
Q psy3469 43 FKVNHLDISPRFAGILMSFTNCLAN-LAGLLAPIIAGYVIQG 83 (154)
Q Consensus 43 ~~~~~~d~~p~~~g~~~g~~~~~~~-lg~~i~P~i~G~i~~~ 83 (154)
....+.-+.+++|+.+.|+...+.. +|.+=+|++.|++.|.
T Consensus 473 ~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 473 TLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ------------------------------------------
T ss_pred heeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 3334444566889999999987764 5889999999999995
No 307
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=38.99 E-value=22 Score=16.76 Aligned_cols=13 Identities=38% Similarity=0.856 Sum_probs=9.7
Q ss_pred HhHhhhhhhhccc
Q psy3469 70 GLLAPIIAGYVIQ 82 (154)
Q Consensus 70 ~~i~P~i~G~i~~ 82 (154)
.+++|+++|.++.
T Consensus 3 ~iIaPi~VGvvl~ 15 (21)
T PF13955_consen 3 TIIAPIVVGVVLT 15 (21)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHH
Confidence 4678888887654
No 308
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=38.93 E-value=26 Score=23.27 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHH---HHHHHhccCCccCCCCCCCCC
Q psy3469 92 VVFVAAAVVYLFSS---TFYIFAASGDRQPWDNPNNDA 126 (154)
Q Consensus 92 ~~F~~~~~~~~i~~---~~~~~~~~~~~q~w~~~~~~~ 126 (154)
.+.+..+.+++++. +++..|++..--+|++|-+..
T Consensus 6 ~vl~l~g~llligftivvl~vyfgrk~ylswakpykra 43 (126)
T PF13120_consen 6 MVLLLIGTLLLIGFTIVVLLVYFGRKFYLSWAKPYKRA 43 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhhheecceeeeeecChhhHH
Confidence 45555666666663 334456777778999987743
No 309
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=38.38 E-value=2.5e+02 Score=23.96 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=38.9
Q ss_pred hhhcccCc--chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHH
Q psy3469 45 VNHLDISP--RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFS 104 (154)
Q Consensus 45 ~~~~d~~p--~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~ 104 (154)
..+.+..| +.+....|-.+.+.++..++.-.+.+.+.+. .||.....+.-.+.++.
T Consensus 289 ~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~----~Gw~~~a~i~Pii~lit 346 (472)
T TIGR00769 289 SKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRK----YGWLTAALITPLVMLLT 346 (472)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHH
Confidence 45555555 4588888888888777776665556888874 78988777666665553
No 310
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=37.89 E-value=2.3e+02 Score=23.35 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHH-HHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469 53 RFAGILMSFTNCLAN-LAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 53 ~~~g~~~g~~~~~~~-lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q 117 (154)
+..+...+...+.++ +-.+.+-.+.-++.+. ...+....|.....+++++.++.....+++.+
T Consensus 158 ~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~--~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 158 EWLSDTFSLATFFGNGVVAIGAGVVANVLADW--FGFGPVAPFDAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH--hCCCCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence 335555554443332 2333333344344442 11334678998888888888876555555543
No 311
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=37.68 E-value=1.9e+02 Score=23.18 Aligned_cols=33 Identities=9% Similarity=0.381 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCccCCCC
Q psy3469 89 AWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDN 121 (154)
Q Consensus 89 ~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~ 121 (154)
.|..+-+++-++.++..++++++.+++..+|..
T Consensus 260 Pcgiaalvllil~vvliiLYiWlyrrRK~swkh 292 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWLYRRRKKSWKH 292 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 355555566666666777777888888888854
No 312
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.45 E-value=50 Score=19.95 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=9.6
Q ss_pred HHHHHHHHHhccCCccCCC
Q psy3469 102 LFSSTFYIFAASGDRQPWD 120 (154)
Q Consensus 102 ~i~~~~~~~~~~~~~q~w~ 120 (154)
+.-++++..+++.++...+
T Consensus 21 ~fiavi~~ayr~~~K~~~d 39 (60)
T COG4736 21 FFIAVIYFAYRPGKKGEFD 39 (60)
T ss_pred HHHHHHHHHhcccchhhHH
Confidence 3334445566666655333
No 313
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=37.31 E-value=38 Score=25.10 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy3469 90 WRVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 90 ~~~~F~~~~~~~~i~~~~ 107 (154)
|+++|+...++.++..+.
T Consensus 3 WK~aF~~Lla~~l~~~~~ 20 (187)
T PF09911_consen 3 WKWAFLILLALNLAFVIV 20 (187)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999976665554443
No 314
>PHA03231 glycoprotein BALF4; Provisional
Probab=35.90 E-value=39 Score=30.96 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhHhhhhhhhcc
Q psy3469 60 SFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 60 g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
++.+.++.++++++.++.|++-
T Consensus 677 ~vg~vv~~v~ga~~SiVsG~~s 698 (829)
T PHA03231 677 AVGNVVSGVAGAVGSIVSGVIS 698 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHH
Confidence 5557888888888888888764
No 315
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.78 E-value=49 Score=21.78 Aligned_cols=9 Identities=11% Similarity=0.331 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy3469 92 VVFVAAAVV 100 (154)
Q Consensus 92 ~~F~~~~~~ 100 (154)
..|++++++
T Consensus 4 K~~llL~l~ 12 (95)
T PF07172_consen 4 KAFLLLGLL 12 (95)
T ss_pred hHHHHHHHH
Confidence 344544443
No 316
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=34.46 E-value=1.2e+02 Score=25.86 Aligned_cols=25 Identities=4% Similarity=-0.093 Sum_probs=13.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.+++....+.-...+++.+...++.
T Consensus 168 ~~~f~il~VgIP~~~ig~l~~~l~~ 192 (443)
T PRK12489 168 ITLLDILAVTIPATLIGVLAAALWS 192 (443)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544544
No 317
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=33.99 E-value=2.3e+02 Score=22.10 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhccCCc
Q psy3469 99 VVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 99 ~~~~i~~~~~~~~~~~~~ 116 (154)
+...+-.++++.+.+.++
T Consensus 83 lwy~~lsl~~~~l~p~r~ 100 (284)
T PF12805_consen 83 LWYLLLSLLWWPLRPYRP 100 (284)
T ss_pred HHHHHHHHHHHHHcCCCH
Confidence 333444444444444433
No 318
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=33.59 E-value=66 Score=24.58 Aligned_cols=13 Identities=8% Similarity=0.342 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHh
Q psy3469 99 VVYLFSSTFYIFA 111 (154)
Q Consensus 99 ~~~~i~~~~~~~~ 111 (154)
+++++.....+|+
T Consensus 24 ~lLIiiva~~lf~ 36 (217)
T PF07423_consen 24 SLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHhhhhee
Confidence 3333333334444
No 319
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=33.43 E-value=1.1e+02 Score=23.75 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=7.5
Q ss_pred HHHHhccCCccCCCC
Q psy3469 107 FYIFAASGDRQPWDN 121 (154)
Q Consensus 107 ~~~~~~~~~~q~w~~ 121 (154)
+|.+.++.++..|-.
T Consensus 210 Lyr~C~k~dPg~p~~ 224 (259)
T PF07010_consen 210 LYRMCWKTDPGTPEN 224 (259)
T ss_pred HHHHhhcCCCCCccc
Confidence 344455666654443
No 320
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=33.10 E-value=3.2e+02 Score=23.51 Aligned_cols=58 Identities=12% Similarity=0.259 Sum_probs=35.2
Q ss_pred hhhcccCc--chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469 45 VNHLDISP--RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST 106 (154)
Q Consensus 45 ~~~~d~~p--~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~ 106 (154)
..+.+..| +....-+|-.+.+.++-.++.-.+.+.+.+. .||+..-.+.-.+.+++.+
T Consensus 305 ~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~----~GW~~~AlitPiv~lit~~ 364 (491)
T PF03219_consen 305 SQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRR----FGWRTAALITPIVILITGL 364 (491)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHhHHHHHHHHH
Confidence 34445554 4455556666666666555555777777774 7898877666555544433
No 321
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=32.92 E-value=1.5e+02 Score=19.70 Aligned_cols=55 Identities=20% Similarity=0.377 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccCC
Q psy3469 55 AGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPW 119 (154)
Q Consensus 55 ~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w 119 (154)
.|...+.....-.++.+..-.+ . -+|--.|.+.+.+.+.......--...+...|
T Consensus 27 ~GfslS~L~~slgv~Q~~~kvi-----a-----lQWIFAFvI~avlfv~sl~vav~~~~~r~~~~ 81 (97)
T PF08611_consen 27 MGFSLSYLTASLGVGQFFIKVI-----A-----LQWIFAFVIAAVLFVLSLVVAVPKWTGRDAFF 81 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----H-----HHHHHHHHHHHHHHHHHHHHHhhhhhccchhh
Confidence 5555555555555555543321 1 45777888888887777666544444443333
No 322
>KOG1278|consensus
Probab=32.20 E-value=1.8e+02 Score=25.74 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=16.5
Q ss_pred hcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcc
Q psy3469 47 HLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 47 ~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~ 81 (154)
..-+.|..||......-...-+.++++..+.+.+.
T Consensus 353 lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rly 387 (628)
T KOG1278|consen 353 LGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLY 387 (628)
T ss_pred hccCCccccccHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 33344555555544444444444444444444443
No 323
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=31.42 E-value=82 Score=25.39 Aligned_cols=24 Identities=4% Similarity=0.119 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 89 AWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 89 ~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
..|.+.++.+++.+++.++--++.
T Consensus 3 dLr~ILIIvG~IAIiaLLvhGlWt 26 (324)
T COG3115 3 DLRLILIIVGAIAIIALLVHGLWT 26 (324)
T ss_pred chhhHHHHHHHHHHHHHHHhhhhh
Confidence 356778888888888887766554
No 324
>KOG3880|consensus
Probab=31.39 E-value=39 Score=27.83 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=20.6
Q ss_pred HHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 67 NLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 67 ~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
..+|.+|..=-..+.+- -.-+-+...++...+.++-+..+++.-
T Consensus 156 GgAGliGa~SYa~lT~~--~~~spk~Tlli~l~lP~lfa~~yf~lL 199 (409)
T KOG3880|consen 156 GGAGLIGASSYAFLTSW--ANLSPKSTLLIMLFLPALFAFAYFFLL 199 (409)
T ss_pred CcchhhhhhHHHHHhhh--cCCChhhHHHHHHHHHHHHHHHHHhee
Confidence 33444444433344431 013455666666666555444444443
No 325
>COG2056 Predicted permease [General function prediction only]
Probab=31.24 E-value=80 Score=26.35 Aligned_cols=35 Identities=6% Similarity=0.045 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCC
Q psy3469 90 WRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNN 124 (154)
Q Consensus 90 ~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~~ 124 (154)
-....++.+..+++|.++.++..-++++++..++.
T Consensus 190 V~~am~ip~lgMi~GLl~ai~~~YrKpReY~~~~~ 224 (444)
T COG2056 190 VPKAMWIPGLGMIVGLLLAIFVSYRKPREYQTNEI 224 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccc
Confidence 44567778888888888877775555555554333
No 326
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=30.50 E-value=1.4e+02 Score=22.12 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=22.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 89 AWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 89 ~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
.|-..|.+.+.+++++.+....+.++++
T Consensus 141 ~Y~l~fe~~s~lLLvAmIGAIvLa~~~~ 168 (186)
T MTH00057 141 DYYYLFILASFILLVAMIGAIVLTHDLI 168 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4667899999999999888888876543
No 327
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=30.46 E-value=1.2e+02 Score=17.87 Aligned_cols=23 Identities=0% Similarity=-0.084 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 90 WRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 90 ~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
+.|+.++.....++|.+..+...
T Consensus 4 ~~wlIIviVlgvIigNia~LK~s 26 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAALKYS 26 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHh
Confidence 34556666666677777665543
No 328
>PRK09546 zntB zinc transporter; Reviewed
Probab=30.41 E-value=1.7e+02 Score=23.34 Aligned_cols=26 Identities=8% Similarity=0.210 Sum_probs=14.9
Q ss_pred cchHHHHHHHHHH-HHHHHHHHHHhcc
Q psy3469 88 AAWRVVFVAAAVV-YLFSSTFYIFAAS 113 (154)
Q Consensus 88 ~~~~~~F~~~~~~-~~i~~~~~~~~~~ 113 (154)
.+|++.|++..++ .+++.+.+++|++
T Consensus 294 l~~~~gy~~~l~im~~i~~~~~~~fkr 320 (324)
T PRK09546 294 GGWPFGFSIFCLLLVVLIGGVAWWLKR 320 (324)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 4577777755444 4445555556654
No 329
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=30.23 E-value=36 Score=26.14 Aligned_cols=22 Identities=0% Similarity=0.138 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q psy3469 92 VVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 92 ~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
+.|.+.++.+.+.+..++|-.+
T Consensus 53 ~~~~i~gi~~g~l~am~vl~rr 74 (224)
T PF13829_consen 53 WYWLIIGILLGLLAAMIVLSRR 74 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444444333
No 330
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=29.82 E-value=94 Score=20.62 Aligned_cols=17 Identities=0% Similarity=0.245 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3469 91 RVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 91 ~~~F~~~~~~~~i~~~~ 107 (154)
..+.++.|+.+.+-+..
T Consensus 45 ai~MIf~Gi~lMlPAav 61 (96)
T PF07214_consen 45 AIAMIFVGIGLMLPAAV 61 (96)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445554444333
No 331
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=29.34 E-value=2.2e+02 Score=20.52 Aligned_cols=15 Identities=13% Similarity=0.494 Sum_probs=7.8
Q ss_pred cchHHHHHHHHHHHH
Q psy3469 88 AAWRVVFVAAAVVYL 102 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~ 102 (154)
.+|-.+-+-.++.++
T Consensus 55 ~gwY~icY~LgiyLL 69 (180)
T COG5249 55 GGWYLICYCLGIYLL 69 (180)
T ss_pred cchhhHHHHHHHHHH
Confidence 567655554444333
No 332
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=28.83 E-value=1.6e+02 Score=18.90 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=14.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
.|+..+|.++.++.++..+.-.++
T Consensus 17 ~GM~~VF~fL~lLi~~~~l~~~~~ 40 (85)
T PRK03814 17 TGMGVVFIFLTLLVYLVQLMSKLI 40 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356667777766665555544444
No 333
>KOG1237|consensus
Probab=28.42 E-value=81 Score=27.61 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 55 AGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 55 ~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
...-..++.+..++|.+++-.+.-++-+. .+|...|.++..+++++.++|+...
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~----~~w~lgf~i~~~~~~lai~iF~~g~ 245 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQDN----VGWKLGFGIPTVLNALAILIFLPGF 245 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhc----ccceeeccHHHHHHHHHHHHHHcCc
Confidence 34667888888999999999999888763 7899999999999999988887653
No 334
>KOG4332|consensus
Probab=28.11 E-value=3.4e+02 Score=22.26 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcccCcc-hHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHH
Q psy3469 24 LTVGILTIGLGFNGAVYSGFKVNHLDISPR-FAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYL 102 (154)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~-~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~ 102 (154)
..++.+++.-.+.|..++.+..+=..+.|+ .|+++.-+...=-+ ++.- ++-+..+......+-+..|-+|...++
T Consensus 346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLn---ifvC-lvLynlh~~~~p~~tr~mf~icS~~~~ 421 (454)
T KOG4332|consen 346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLN---IFVC-LVLYNLHVDAFPTTTRNMFGICSAFLF 421 (454)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhh---Hhhh-hhheecccccCccccchhhhhhHHHHH
Confidence 345555555555555444444444456674 46655443322111 1111 111111111123445688999998888
Q ss_pred HHHHHHHHh
Q psy3469 103 FSSTFYIFA 111 (154)
Q Consensus 103 i~~~~~~~~ 111 (154)
++.+.-..+
T Consensus 422 ~a~i~~~~L 430 (454)
T KOG4332|consen 422 VASILQRRL 430 (454)
T ss_pred HHHHHHHHH
Confidence 886655444
No 335
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=27.80 E-value=1.1e+02 Score=24.10 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=26.2
Q ss_pred hHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCCchhhhhhcc
Q psy3469 71 LLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNNDAPTPRAATKRDA 137 (154)
Q Consensus 71 ~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~~~~~~~~~~~~~~~ 137 (154)
.++..+.|.+.= ++|...--+.-++..+..++.-++.+ +|.+|++++.++..+.||-.
T Consensus 97 LVg~sL~gV~~f-----~EW~t~~~~IlG~iAliliviG~~lT----s~~~~~nk~~~~~~n~kkgi 154 (288)
T COG4975 97 LVGTSLFGVFVF-----HEWTTPTQIILGFIALILIVIGIYLT----SKQDRNNKEEENPSNLKKGI 154 (288)
T ss_pred HhhceeeeEEEE-----eccCcchhHHHHHHHHHHHHHhheEe----eeeccccccccChHhhhhhe
Confidence 455566666654 55766544333333333332222222 33444444444455555543
No 336
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=26.70 E-value=46 Score=21.32 Aligned_cols=19 Identities=11% Similarity=0.660 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3469 92 VVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 92 ~~F~~~~~~~~i~~~~~~~ 110 (154)
..|++...+.+++.+.++.
T Consensus 4 ~~Fl~~l~lliig~~~~v~ 22 (92)
T PF13038_consen 4 ILFLVGLILLIIGGFLFVF 22 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455554555555554443
No 337
>KOG1289|consensus
Probab=26.68 E-value=95 Score=27.14 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=33.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCCchhhhhhcccCCC-CcccCcccccccC
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNNDAPTPRAATKRDASNNN-RTSYASDVEDTVQ 154 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 154 (154)
.+.+++-.+.+++.+.+.+-+... .+...+-|...+.++++.++-+ +++ .++++.+.||.+|
T Consensus 486 ~~MNya~VV~gg~~lf~li~~~~~---~~k~f~gP~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~ 548 (550)
T KOG1289|consen 486 DNMNYACVVYGGVMLFCLIYYFVS---ARKWFKGPIPSVLEENEFDNSS--NVEGVEKSASDSEDSVK 548 (550)
T ss_pred ccCceEEEeehhhhhhhhheeeee---cceeecCCccccccccccccch--hhhhhhhcCccchhhcc
Confidence 456666677777777777655444 2222333444444444444333 333 5556666666654
No 338
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=26.42 E-value=1.2e+02 Score=23.00 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCccCCCC
Q psy3469 94 FVAAAVVYLFSSTFYIFAASGDRQPWDN 121 (154)
Q Consensus 94 F~~~~~~~~i~~~~~~~~~~~~~q~w~~ 121 (154)
..+....+++|+++..-+.+.++..|.+
T Consensus 166 ~~mlllal~iG~LLa~~l~r~rr~r~~~ 193 (210)
T PF10144_consen 166 RLMLLLALLIGVLLARSLLRKRRSRWQQ 193 (210)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 3344444556666666666666666665
No 339
>COG4425 Predicted membrane protein [Function unknown]
Probab=25.13 E-value=4.6e+02 Score=22.81 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=50.5
Q ss_pred hhhhcccCcc---hHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 44 KVNHLDISPR---FAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 44 ~~~~~d~~p~---~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
+++...+.|+ ..|...|+...+++..+...-.+..++--.+++...-|++....+++..++++.++.-
T Consensus 63 ~sLTPSLLPr~~l~qgv~sgf~~A~Gy~~gv~~~wl~~y~elp~~s~~~~R~~~~~~ai~~~~~a~~fl~q 133 (588)
T COG4425 63 ASLTPSLLPRPWLFQGVLSGFSLAAGYGAGVFLHWLWRYLELPESSPRPPRWAKPAAAIVGAAGAVGFLVQ 133 (588)
T ss_pred HhcCccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Confidence 3444556664 3899999999999999999999999887655555667777777777777776666543
No 340
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.00 E-value=2.2e+02 Score=19.00 Aligned_cols=12 Identities=25% Similarity=0.747 Sum_probs=5.5
Q ss_pred chHHHHHHHHHH
Q psy3469 89 AWRVVFVAAAVV 100 (154)
Q Consensus 89 ~~~~~F~~~~~~ 100 (154)
.|..+|++.+++
T Consensus 75 ~~tl~~lllGv~ 86 (100)
T TIGR02230 75 SWTLTMLIVGVV 86 (100)
T ss_pred HHHHHHHHHHHH
Confidence 344455544443
No 341
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=24.84 E-value=1.2e+02 Score=20.15 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 92 VVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 92 ~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
..+.+.+++.++......+..+++.
T Consensus 73 ~a~liv~~~~l~la~i~~~~~~~~l 97 (121)
T PF07332_consen 73 LAFLIVAGLYLLLALILLLIGRRRL 97 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566665555554545443333
No 342
>COG1455 CelB Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]
Probab=24.68 E-value=59 Score=27.52 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=15.0
Q ss_pred cchHHHHHHHHHHHHHHHHHH-HHhccCCcc
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFY-IFAASGDRQ 117 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~-~~~~~~~~q 117 (154)
.+|+..-+.... .+++.+++ .+++..++|
T Consensus 389 ~~w~a~vlq~i~-l~v~~lIY~PF~kv~dk~ 418 (432)
T COG1455 389 GDWRALVLQLIN-LVVAVLIYLPFFKVYDKQ 418 (432)
T ss_pred ccHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 678776654433 34444444 444444444
No 343
>PRK12482 flagellar motor protein MotA; Provisional
Probab=24.63 E-value=1.9e+02 Score=23.06 Aligned_cols=42 Identities=7% Similarity=0.118 Sum_probs=34.2
Q ss_pred hhhhhhcccCcch--HHHHHHHHHHHHHH---HHhHhhhhhhhcccC
Q psy3469 42 GFKVNHLDISPRF--AGILMSFTNCLANL---AGLLAPIIAGYVIQG 83 (154)
Q Consensus 42 ~~~~~~~d~~p~~--~g~~~g~~~~~~~l---g~~i~P~i~G~i~~~ 83 (154)
-.+..+.|++|.. .|++.|++.+.+++ ...+||-+...++.+
T Consensus 163 ~v~~~~a~~aPa~GiiGtvlGLI~mL~~L~d~p~~IG~~iAvALvtT 209 (287)
T PRK12482 163 RSLQRIAEAMPGFGICAAVLGIIITMQSIDGSIAEIGLKVAAALVGT 209 (287)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4566788888854 89999999999999 568899888888773
No 344
>TIGR03727 urea_t_UrtC_arc urea ABC transporter, permease protein UrtC, archaeal type. Members of this protein family are ABC transporter permease subunits restricted to the Archaea. Several lines of evidence suggest this protein is functionally analogous, as well as homologous, to the UrtC subunit of the Corynebacterium glutamicum urea transporter. All members of the operon show sequence similarity to urea transport subunits, the gene is located near the urease structural subunits in two of three species, and partial phylogenetic profiling identifies this permease subunit as closely matching the profile of urea utilization.
Probab=24.63 E-value=80 Score=25.91 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=12.5
Q ss_pred HHHHHHHhHhhhhhhhccc
Q psy3469 64 CLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 64 ~~~~lg~~i~P~i~G~i~~ 82 (154)
..+..++..||.+++.+..
T Consensus 281 vlGG~gs~~G~i~Ga~ll~ 299 (364)
T TIGR03727 281 SLGGRESLLGAIVATVAIE 299 (364)
T ss_pred hcCCCCchHHHHHHHHHHH
Confidence 3556677777777776654
No 345
>PRK10263 DNA translocase FtsK; Provisional
Probab=24.55 E-value=3.9e+02 Score=26.25 Aligned_cols=14 Identities=7% Similarity=0.382 Sum_probs=7.3
Q ss_pred HHhHhhhhhhhccc
Q psy3469 69 AGLLAPIIAGYVIQ 82 (154)
Q Consensus 69 g~~i~P~i~G~i~~ 82 (154)
||++|-.+...+..
T Consensus 143 GGIIG~lLs~lL~~ 156 (1355)
T PRK10263 143 GGVIGSLLSTTLQP 156 (1355)
T ss_pred cchHHHHHHHHHHH
Confidence 55555555554444
No 346
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.72 E-value=1.6e+02 Score=22.04 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=21.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCCchhh
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNNDAPTPRAA 132 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~~~~~~~~~~ 132 (154)
..+|+..++++ +.+++.+.|..-.....+.-..|+++++.+..+
T Consensus 2 ~~~Rw~~~ILl-l~a~~~~~w~~~~~~~~~~~v~~~~d~p~Y~~e 45 (188)
T COG3117 2 MSRRWVYLILL-LAALALSGWLLGLEQDEIEQVRPNPDEPAYTME 45 (188)
T ss_pred cchhHHHHHHH-HHHHHHHHHhhhcccccccccccCCCCCceeec
Confidence 35777774443 333333334443444444455566666665443
No 347
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=22.56 E-value=1.1e+02 Score=24.83 Aligned_cols=18 Identities=6% Similarity=0.231 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy3469 90 WRVVFVAAAVVYLFSSTF 107 (154)
Q Consensus 90 ~~~~F~~~~~~~~i~~~~ 107 (154)
..+.+++.-.+.++|.++
T Consensus 285 ~~~ly~~af~lIiiG~vv 302 (334)
T PF06027_consen 285 FSWLYILAFALIIIGFVV 302 (334)
T ss_pred ccHHHHHHHHHHHHHhhe
Confidence 444455444444444443
No 348
>PRK13214 photosystem I reaction center subunit X; Reviewed
Probab=21.58 E-value=92 Score=20.23 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=20.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCccCCCC-CCCCC
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDN-PNNDA 126 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~-~~~~~ 126 (154)
..|+.- .+.+++++.++.+.+++...|.-++ |+.+.
T Consensus 14 ~~Wsp~---vaiIMI~cNilai~igk~~I~~p~~Gp~lP~ 50 (86)
T PRK13214 14 LEWSPK---VALVMIICNIIAIAFGKATIKYPNVGPALPS 50 (86)
T ss_pred CCcCch---hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 455542 3455666777676777666655444 44443
No 349
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=21.46 E-value=4.2e+02 Score=20.99 Aligned_cols=33 Identities=9% Similarity=0.014 Sum_probs=17.1
Q ss_pred hhhhhhhhccc---CcchHHHHHHHHHHHHHHHHhH
Q psy3469 40 YSGFKVNHLDI---SPRFAGILMSFTNCLANLAGLL 72 (154)
Q Consensus 40 ~~~~~~~~~d~---~p~~~g~~~g~~~~~~~lg~~i 72 (154)
++..-....|+ .|++.|.-.|+.-.++++.--+
T Consensus 222 Q~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi 257 (267)
T PF07672_consen 222 QGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTI 257 (267)
T ss_pred hHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHH
Confidence 34444444442 3566666666665555444333
No 350
>PRK09110 flagellar motor protein MotA; Validated
Probab=21.25 E-value=2.4e+02 Score=22.40 Aligned_cols=41 Identities=10% Similarity=0.234 Sum_probs=31.1
Q ss_pred hhhhhhcccCcc--hHHHHHHHHHHHHHHH---HhHhhhhhhhccc
Q psy3469 42 GFKVNHLDISPR--FAGILMSFTNCLANLA---GLLAPIIAGYVIQ 82 (154)
Q Consensus 42 ~~~~~~~d~~p~--~~g~~~g~~~~~~~lg---~~i~P~i~G~i~~ 82 (154)
-.+..+.+++|. -.|++.|++.+.+++. ..+||-+...++.
T Consensus 163 ~v~~~~g~~aPa~GiiGtv~GLI~~l~~l~~dp~~iG~~iAvAlv~ 208 (283)
T PRK09110 163 HALQKVADALPAFGIVAAVLGVVKTMGSIDQPPAVLGALIGAALVG 208 (283)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 345567777884 3889999988888885 7788888777766
No 351
>PRK11111 hypothetical protein; Provisional
Probab=21.24 E-value=3.7e+02 Score=20.31 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy3469 92 VVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 92 ~~F~~~~~~~~i~~~~~~~~~ 112 (154)
..|-+.+++.+....+-.+.+
T Consensus 76 ~afrIaGGiiL~~ial~Ml~g 96 (214)
T PRK11111 76 DSFRIAGGILVVTIAMSMISG 96 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 367777766665554444444
No 352
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=21.18 E-value=3.3e+02 Score=22.95 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=29.7
Q ss_pred hhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhh
Q psy3469 42 GFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAG 78 (154)
Q Consensus 42 ~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G 78 (154)
.....++|..| ++||...|..+...++-.++.-.++=
T Consensus 376 ~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 376 AVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred HHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34457888666 77999999999999999988876644
No 353
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=20.77 E-value=1.5e+02 Score=22.33 Aligned_cols=23 Identities=4% Similarity=0.017 Sum_probs=13.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
.++-+.....+++.+-|.+..++
T Consensus 128 s~~~YlllLvgGli~GGLlA~~~ 150 (239)
T PF13105_consen 128 SHYLYLLLLVGGLILGGLLAMLI 150 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666665555554443
No 354
>PRK14780 lipoprotein signal peptidase; Provisional
Probab=20.42 E-value=1.8e+02 Score=23.00 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q psy3469 93 VFVAAAVVYLFSST 106 (154)
Q Consensus 93 ~F~~~~~~~~i~~~ 106 (154)
.++.++.+.++...
T Consensus 205 i~I~~G~~llv~~~ 218 (263)
T PRK14780 205 VYIVVGVCVLVVIL 218 (263)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555554444333
No 355
>PRK14206 camphor resistance protein CrcB; Provisional
Probab=20.04 E-value=2.2e+02 Score=19.52 Aligned_cols=21 Identities=0% Similarity=0.066 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhh
Q psy3469 55 AGILMSFTNCLANLAGLLAPI 75 (154)
Q Consensus 55 ~g~~~g~~~~~~~lg~~i~P~ 75 (154)
....+|+.......+.+.-=.
T Consensus 68 ~~l~tGf~GgfTTFSTf~~e~ 88 (127)
T PRK14206 68 LFVMVGVCGGFTTFSSFSLQT 88 (127)
T ss_pred HHHHHHHccccccHHHHHHHH
Confidence 456666666655555554433
Done!