Query psy3469
Match_columns 154
No_of_seqs 123 out of 1146
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 17:28:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.0 1.6E-09 5.6E-14 86.5 10.4 109 4-117 98-212 (451)
2 4aps_A DI-OR tripeptide H+ sym 99.0 5.6E-09 1.9E-13 84.7 12.3 109 4-117 91-202 (491)
3 3o7q_A L-fucose-proton symport 98.9 2.2E-08 7.4E-13 79.8 13.7 108 4-115 97-233 (438)
4 2gfp_A EMRD, multidrug resista 98.7 2.5E-08 8.5E-13 78.2 6.9 105 4-113 71-176 (375)
5 2cfq_A Lactose permease; trans 98.6 1.2E-07 4E-12 76.1 8.6 104 5-113 296-401 (417)
6 2xut_A Proton/peptide symporte 98.6 4.5E-07 1.5E-11 74.1 11.1 103 4-110 91-197 (524)
7 1pw4_A Glycerol-3-phosphate tr 98.6 1.1E-07 3.8E-12 75.8 7.3 99 10-112 333-434 (451)
8 2xut_A Proton/peptide symporte 98.4 3.7E-07 1.3E-11 74.6 6.7 87 25-113 408-504 (524)
9 4aps_A DI-OR tripeptide H+ sym 98.4 4E-07 1.4E-11 73.7 5.9 84 26-114 390-474 (491)
10 4gc0_A D-xylose-proton symport 98.2 3.6E-06 1.2E-10 68.0 8.0 77 41-117 389-468 (491)
11 3o7q_A L-fucose-proton symport 98.0 1.4E-05 4.9E-10 63.3 8.2 96 4-106 331-427 (438)
12 4gc0_A D-xylose-proton symport 97.3 0.00015 5.3E-09 58.3 3.9 86 21-106 125-215 (491)
13 2gfp_A EMRD, multidrug resista 97.3 0.00024 8.3E-09 55.2 4.5 65 30-98 299-363 (375)
14 2cfq_A Lactose permease; trans 95.2 0.00056 1.9E-08 54.5 -4.5 49 53-106 134-182 (417)
15 2jln_A MHP1; hydantoin, transp 68.0 4.4 0.00015 33.2 3.7 23 61-83 359-381 (501)
16 4djk_A Probable glutamate/gamm 49.6 54 0.0019 26.1 7.2 26 90-115 443-468 (511)
17 2zz9_A Aquaporin-4; water tran 38.4 33 0.0011 26.3 4.0 24 89-112 206-230 (301)
18 2knc_A Integrin alpha-IIB; tra 37.3 57 0.0019 18.4 5.4 21 90-110 13-33 (54)
19 3rko_J NADH-quinone oxidoreduc 35.8 53 0.0018 23.3 4.5 30 88-117 135-164 (184)
20 1ldf_A Glycerol uptake facilit 32.6 49 0.0017 25.0 4.1 23 90-112 232-255 (281)
21 2jo1_A Phospholemman; FXYD1, N 30.4 31 0.0011 20.6 2.1 24 88-111 14-37 (72)
22 2l2t_A Receptor tyrosine-prote 29.6 58 0.002 17.5 2.9 16 102-117 25-40 (44)
23 2ks1_B Epidermal growth factor 26.6 71 0.0024 17.1 2.9 15 102-116 26-40 (44)
24 2knc_B Integrin beta-3; transm 25.4 34 0.0012 20.8 1.7 22 90-111 11-32 (79)
25 1v54_K IHQ, cytochrome C oxida 24.6 1E+02 0.0035 17.4 4.4 36 90-127 13-48 (56)
26 2kv5_A FST, putative uncharact 24.4 33 0.0011 17.4 1.2 14 69-82 6-19 (33)
27 1zza_A Stannin, AG8_1; helix, 22.9 1.3E+02 0.0045 18.1 5.1 10 116-125 40-49 (90)
28 2zxe_G FXYD10, phospholemman-l 22.0 81 0.0028 18.9 2.8 25 88-112 17-41 (74)
29 3qnq_A PTS system, cellobiose- 21.8 18 0.00061 29.4 -0.2 24 88-112 396-419 (442)
30 4ev6_A Magnesium transport pro 21.6 60 0.0021 24.8 2.8 25 88-112 309-334 (339)
31 2y69_K Cytochrome C oxidase po 20.8 1.5E+02 0.0052 17.9 4.4 36 90-127 37-72 (80)
32 1v54_D Cytochrome C oxidase su 20.7 29 0.001 23.8 0.7 26 87-112 75-100 (147)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.02 E-value=1.6e-09 Score=86.47 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=83.3
Q ss_pred cchhHHHHHHHHhh----cCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhh
Q psy3469 4 GQYGPAVCLVAASY----TGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAG 78 (154)
Q Consensus 4 g~~~~ai~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G 78 (154)
+.++.+++.++..+ .+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+....+|.+++|.+.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 98 GLILAAAVMLFMGFVPWATS-SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHHHHHCHHHHS-SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccc-cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666 54 55555555555555566667778889999887 77999999999999999999999999
Q ss_pred hcccCcccccc-hHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469 79 YVIQGKPTQAA-WRVVFVAAAVVYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 79 ~i~~~~~~~~~-~~~~F~~~~~~~~i~~~~~~~~~~~~~q 117 (154)
++.+. .+ |++.|++.+.+.++..++..++.+++++
T Consensus 177 ~l~~~----~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 177 LGMAW----FNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHH----TCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHH----hccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 98873 56 9999999998888877776666665544
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.98 E-value=5.6e-09 Score=84.74 Aligned_cols=109 Identities=16% Similarity=0.115 Sum_probs=82.1
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-ch--HHHHHHHHHHHHHHHHhHhhhhhhhc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RF--AGILMSFTNCLANLAGLLAPIIAGYV 80 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~--~g~~~g~~~~~~~lg~~i~P~i~G~i 80 (154)
++++.+++.+++.+.+ +.+..++...+...+.+...+...+.+.|..| ++ |+.+.++.+...++|..++|.+.|++
T Consensus 91 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 169 (491)
T 4aps_A 91 GGVLIMLGHIVLALPF-GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA 169 (491)
T ss_dssp HHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666664 55554555555555566667788889999776 56 88899999999999999999999999
Q ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469 81 IQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 81 ~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q 117 (154)
.+. .+|++.|++.+...+++.+.+.+..++...
T Consensus 170 ~~~----~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 170 QEA----AGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHH----SCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred Hhh----hhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 884 689999999988888887777666544433
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.93 E-value=2.2e-08 Score=79.77 Aligned_cols=108 Identities=9% Similarity=0.052 Sum_probs=78.3
Q ss_pred cchhHHHHHHHH---hhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhh
Q psy3469 4 GQYGPAVCLVAA---SYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGY 79 (154)
Q Consensus 4 g~~~~ai~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~ 79 (154)
++++.+++.++. .+.+ +.+..++...+...+.+...+...+.+.|..| ++|+.+.|+.+.+..+|..++|.+.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 97 GLFLYALGAALFWPAAEIM-NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHhccccc-cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555 5554 66555555555555566667778889999887 779999999999999999999999999
Q ss_pred cc-cCcccccc------------------------hHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 80 VI-QGKPTQAA------------------------WRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 80 i~-~~~~~~~~------------------------~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
+. +. ... |++.|++.+.+.++..+.+.+...++
T Consensus 176 l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~ 233 (438)
T 3o7q_A 176 LILSN---VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA 233 (438)
T ss_dssp HHHTS---SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHhcc---cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 98 43 122 99999888887777766655544333
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.71 E-value=2.5e-08 Score=78.20 Aligned_cols=105 Identities=15% Similarity=-0.001 Sum_probs=75.3
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhccc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~ 82 (154)
+.+..+++.+...+.+ +.+..+....+...+.+...+...+.+.|..| ++|+.+.|+.+....+|..++|.+.|++.+
T Consensus 71 ~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 71 GMSIFMLATLVAVTTS-SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444555555555543 44444444444444455556677788899876 789999999999999999999999999988
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
. .+|+..|++.+.+.++..+...++.+
T Consensus 150 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (375)
T 2gfp_A 150 M----WNWRACYLFLLVLCAGVTFSMARWMP 176 (375)
T ss_dssp H----HHHHHHHHHHHHHHHHHHCCCCCSSC
T ss_pred h----ccHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 3 68999999988887777664444443
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.62 E-value=1.2e-07 Score=76.12 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=70.6
Q ss_pred chhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHH-HHHHHHHHHhHhhhhhhhccc
Q psy3469 5 QYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSF-TNCLANLAGLLAPIIAGYVIQ 82 (154)
Q Consensus 5 ~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~-~~~~~~lg~~i~P~i~G~i~~ 82 (154)
.++.++.++.+.+.+ +.+..+....+.....+...+..+....|..| +.||++.|+ .+....+|++++|.+.|++.+
T Consensus 296 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~ 374 (417)
T 2cfq_A 296 GTIMSVRIIGSSFAT-SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp HHHHHHHHHHHTTCC-SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence 334444444444443 44333332222222333334556788889887 669999999 488999999999999999988
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy3469 83 GKPTQAAWRVVFVAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 83 ~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~ 113 (154)
. .+|+..|.+.+++.+++.+..+++.+
T Consensus 375 ~----~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 375 S----IGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp H----SHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred h----cCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3 56889999999888888876655443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.58 E-value=4.5e-07 Score=74.13 Aligned_cols=103 Identities=10% Similarity=-0.065 Sum_probs=72.4
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHH---HHHHHHHHHhHhhhhhhh
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSF---TNCLANLAGLLAPIIAGY 79 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~---~~~~~~lg~~i~P~i~G~ 79 (154)
+.++.+++.+++.+.+.+.+..++...+...+.+...+...+.+.|..| ++|+.+.++ .+...++|.+++|.+.|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 91 LSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555543144444444444444556666778889999876 668766555 999999999999999999
Q ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHH
Q psy3469 80 VIQGKPTQAAWRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 80 i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~ 110 (154)
+.+. .+|+..|++.+.+.+++.+.+.+
T Consensus 171 l~~~----~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 171 LLKN----FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHT----SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred Hhcc----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 9874 68999999998887777665544
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.58 E-value=1.1e-07 Score=75.78 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=71.5
Q ss_pred HHHHHHhhcCC-ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHH-HHhHhhhhhhhcccCccc
Q psy3469 10 VCLVAASYTGC-DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANL-AGLLAPIIAGYVIQGKPT 86 (154)
Q Consensus 10 i~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~l-g~~i~P~i~G~i~~~~~~ 86 (154)
++++++.+.+. +.+.....+.+...+.+...+..++..+|..| +++|++.|+.+.+.++ |.+++|.+.|++.+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~--- 409 (451)
T 1pw4_A 333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF--- 409 (451)
T ss_dssp HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 34444444332 33333333333333344445666788899887 6699999999999999 999999999999984
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 87 QAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 87 ~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.+|+..|++.+++.+++.+..++..
T Consensus 410 -~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 410 -FGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp -SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999888887776654
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.42 E-value=3.7e-07 Score=74.59 Aligned_cols=87 Identities=11% Similarity=-0.020 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccch---------HHHH
Q psy3469 25 TVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAW---------RVVF 94 (154)
Q Consensus 25 ~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~---------~~~F 94 (154)
.+....+...+.+...+..++...|..| ++||++.|+.++..++|++++|.+.|.+.+.. ..+| +..|
T Consensus 408 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~--~~~~~~~~~~~~~~~~~ 485 (524)
T 2xut_A 408 QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT--VTEQIVQTGMSVTAFQM 485 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH--HHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc--cccccccccccccccHH
Confidence 3333344444445556778888999887 67999999999999999999999999998731 1123 3447
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q psy3469 95 VAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 95 ~~~~~~~~i~~~~~~~~~~ 113 (154)
++.+++.+++.++++++.+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 486 FFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888887777666553
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.38 E-value=4e-07 Score=73.73 Aligned_cols=84 Identities=11% Similarity=0.021 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHH
Q psy3469 26 VGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFS 104 (154)
Q Consensus 26 ~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~ 104 (154)
+....+.....+...+..++...|..| ++||++.|+.+...++|.+++|.+.|++.+ .++...|.+++.+.+++
T Consensus 390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 464 (491)
T 4aps_A 390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----KSEVAYFSYFGLGSVVL 464 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----SSTTHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHH
Confidence 333333344445545677889999887 669999999999999999999999999977 35778888888888888
Q ss_pred HHHHHHhccC
Q psy3469 105 STFYIFAASG 114 (154)
Q Consensus 105 ~~~~~~~~~~ 114 (154)
.++.+++.++
T Consensus 465 ~~~~~~~~~~ 474 (491)
T 4aps_A 465 GIVLVFLSKR 474 (491)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHH
Confidence 7776665543
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.22 E-value=3.6e-06 Score=67.95 Aligned_cols=77 Identities=9% Similarity=-0.013 Sum_probs=60.8
Q ss_pred hhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc--cccchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469 41 SGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP--TQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 41 ~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~--~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q 117 (154)
+..|.+..|+.| +.|+++.|+.+.+++++++++|.+...+.+... ...++...|++.+++.+++.++.+++.++++.
T Consensus 389 ~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 389 PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 456788999998 669999999999999999999999887765210 11345567888899999998888888876654
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.05 E-value=1.4e-05 Score=63.28 Aligned_cols=96 Identities=13% Similarity=0.068 Sum_probs=65.0
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccC
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
+.++.+++++++.+.+ +.+. +..+.+..++.+...+..++...|..|++++.+.++.. .+.+++.++|.+.|++.+.
T Consensus 331 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 331 YALIAMALCLISAFAG-GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHHHHHHHHHHHHHCC-HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554 3333 33334444445555677888878877766888888877 7789999999999999984
Q ss_pred cccccc-hHHHHHHHHHHHHHHHH
Q psy3469 84 KPTQAA-WRVVFVAAAVVYLFSST 106 (154)
Q Consensus 84 ~~~~~~-~~~~F~~~~~~~~i~~~ 106 (154)
.+ ++..|++.+.+.++..+
T Consensus 408 ----~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 408 ----AGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp ----HTSSGGGGHHHHHHHHHHHH
T ss_pred ----hcchHHHHHHHHHHHHHHHH
Confidence 44 88888877655554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.31 E-value=0.00015 Score=58.30 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=58.5
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcc----cccchHHHHH
Q psy3469 21 DPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKP----TQAAWRVVFV 95 (154)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~----~~~~~~~~F~ 95 (154)
+.+..++.-.+...+.|...+....++.|..| ++||...++.+....+|.++++.+...+..... ....|+..+.
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA 204 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence 44444444455555566667778889999887 779999999999999999999988877654321 1245666666
Q ss_pred HHHHHHHHHHH
Q psy3469 96 AAAVVYLFSST 106 (154)
Q Consensus 96 ~~~~~~~i~~~ 106 (154)
......++..+
T Consensus 205 ~~~~~~~~~~~ 215 (491)
T 4gc0_A 205 SECIPALLFLM 215 (491)
T ss_dssp TTHHHHHHHHH
T ss_pred hhhhhhhhhhh
Confidence 55544444433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.27 E-value=0.00024 Score=55.21 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=52.0
Q ss_pred HHHHHHHHhhhhhhhhhhcccCcchHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHH
Q psy3469 30 TIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAA 98 (154)
Q Consensus 30 ~~~~~~~g~~~~~~~~~~~d~~p~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~ 98 (154)
.+...+.+...+...+..+|..|+++|++.|+.+...++|..++|.+.|.+.+. .+|+..|.+.+
T Consensus 299 ~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~----~~~~~~~~~~~ 363 (375)
T 2gfp_A 299 ALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQT----GQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcC----CcccHHHHHHH
Confidence 333344555567778888998888899999999999999999999999999773 66777777643
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.21 E-value=0.00056 Score=54.48 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHH
Q psy3469 53 RFAGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSST 106 (154)
Q Consensus 53 ~~~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~ 106 (154)
++++...|..+..+.+|..++|.+.|++.+ .+|+..|++.+...++..+
T Consensus 134 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-----~~~~~~f~~~~~~~~~~~~ 182 (417)
T 2cfq_A 134 RRSNFEFGRARMFGCVGWALGASIVGIMFT-----INNQFVFWLGSGCALILAV 182 (417)
T ss_dssp HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-----HCSHHHHTTTTTTTTTHHH
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHH-----hchhHHHHHHHHHHHHHHH
Confidence 346777788888889999999999999986 4689999877665444333
No 15
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=67.98 E-value=4.4 Score=33.22 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhHhhhhhhhcccC
Q psy3469 61 FTNCLANLAGLLAPIIAGYVIQG 83 (154)
Q Consensus 61 ~~~~~~~lg~~i~P~i~G~i~~~ 83 (154)
+.++...+|.+++|+.+-.+.|+
T Consensus 359 f~~FL~~lg~~l~P~~gI~l~Dy 381 (501)
T 2jln_A 359 LNTFLNLLASALGPLAGIMISDY 381 (501)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888877766554
No 16
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=49.56 E-value=54 Score=26.05 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 90 WRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 90 ~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
+++...+.+++.+++.+.+++..+.+
T Consensus 443 ~~~~~~~~~~~~~~~~i~~~~~~~~~ 468 (511)
T 4djk_A 443 DMYVELLVVSFLVVLALPFILYAVHD 468 (511)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555554444333
No 17
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=38.37 E-value=33 Score=26.35 Aligned_cols=24 Identities=4% Similarity=0.290 Sum_probs=11.2
Q ss_pred chHHHHHHHHHH-HHHHHHHHHHhc
Q psy3469 89 AWRVVFVAAAVV-YLFSSTFYIFAA 112 (154)
Q Consensus 89 ~~~~~F~~~~~~-~~i~~~~~~~~~ 112 (154)
++.|+|++.-.+ .+++.+++-++.
T Consensus 206 ~~~WVy~vgPiiGailaa~ly~~l~ 230 (301)
T 2zz9_A 206 ENHWIYWVGPIIGAVLAGALYEYVF 230 (301)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred cceeeeeeHHHHHHHHHHHHHHHHh
Confidence 344566654333 234444444443
No 18
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.26 E-value=57 Score=18.41 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy3469 90 WRVVFVAAAVVYLFSSTFYIF 110 (154)
Q Consensus 90 ~~~~F~~~~~~~~i~~~~~~~ 110 (154)
|-.+-.+.+++.+++.+.+.+
T Consensus 13 wiIi~svl~GLllL~li~~~L 33 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAM 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666555544
No 19
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=35.82 E-value=53 Score=23.32 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=24.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYIFAASGDRQ 117 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q 117 (154)
..|-..|-..+.+++++.+....+.+++++
T Consensus 135 t~Y~lpFElaSvlLLvAmIGAIvLarr~~~ 164 (184)
T 3rko_J 135 GPYVLAVELASMLLLAGLVVAFHVGREERA 164 (184)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 357788999999999998888888776654
No 20
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=32.59 E-value=49 Score=24.96 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHhc
Q psy3469 90 WRVVFVAAAVVY-LFSSTFYIFAA 112 (154)
Q Consensus 90 ~~~~F~~~~~~~-~i~~~~~~~~~ 112 (154)
|-|++++.-.+- +++.+++-++.
T Consensus 232 ~~WVy~vgPi~Ga~la~~~y~~l~ 255 (281)
T 1ldf_A 232 YFLVPLFGPIVGAIVGAFAYRKLI 255 (281)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeHHhHHHHHHHHHHHHHHHHHh
Confidence 567777655543 34444554443
No 21
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=30.37 E-value=31 Score=20.61 Aligned_cols=24 Identities=4% Similarity=0.110 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHh
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
+..+..=+++++++++..++.++-
T Consensus 14 ~tLRiGGLifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 14 QSLQIGGLVIAGILFILGILIVLS 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHc
Confidence 445666666677776666666554
No 22
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=29.58 E-value=58 Score=17.53 Aligned_cols=16 Identities=13% Similarity=0.303 Sum_probs=7.1
Q ss_pred HHHHHHHHHhccCCcc
Q psy3469 102 LFSSTFYIFAASGDRQ 117 (154)
Q Consensus 102 ~i~~~~~~~~~~~~~q 117 (154)
++..+.++++.++++|
T Consensus 25 ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhhhhhhh
Confidence 3444444445544443
No 23
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.56 E-value=71 Score=17.14 Aligned_cols=15 Identities=7% Similarity=0.049 Sum_probs=6.4
Q ss_pred HHHHHHHHHhccCCc
Q psy3469 102 LFSSTFYIFAASGDR 116 (154)
Q Consensus 102 ~i~~~~~~~~~~~~~ 116 (154)
++..+.++++.+++.
T Consensus 26 ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 26 VVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhhHh
Confidence 344444444444433
No 24
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=25.39 E-value=34 Score=20.84 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q psy3469 90 WRVVFVAAAVVYLFSSTFYIFA 111 (154)
Q Consensus 90 ~~~~F~~~~~~~~i~~~~~~~~ 111 (154)
+..+..+.+++.++|.++++++
T Consensus 11 ~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3345556666777776665554
No 25
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=24.60 E-value=1e+02 Score=17.36 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCC
Q psy3469 90 WRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNNDAP 127 (154)
Q Consensus 90 ~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~~~~~ 127 (154)
|....++.+..+.++...+ ..++.--+|+.-+-.+.
T Consensus 13 YGn~~L~~Ga~FC~a~W~y--~~TQ~GIeWnlSPVGrV 48 (56)
T 1v54_K 13 YGNAVLASGATFCVAVWVY--MATQIGIEWNPSPVGRV 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHSCCCCCCCCTTTC
T ss_pred cCceeeecchhhhHhhHhh--hheeeceeeccCccccc
Confidence 5556666665555554444 44445557776544433
No 26
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=24.36 E-value=33 Score=17.36 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=8.4
Q ss_pred HHhHhhhhhhhccc
Q psy3469 69 AGLLAPIIAGYVIQ 82 (154)
Q Consensus 69 g~~i~P~i~G~i~~ 82 (154)
-.+++|+++|.+..
T Consensus 6 ~~IIaPivVGvvl~ 19 (33)
T 2kv5_A 6 SLVIAPIFVGLVLE 19 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34567777776543
No 27
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=22.90 E-value=1.3e+02 Score=18.06 Aligned_cols=10 Identities=10% Similarity=0.175 Sum_probs=4.2
Q ss_pred ccCCCCCCCC
Q psy3469 116 RQPWDNPNND 125 (154)
Q Consensus 116 ~q~w~~~~~~ 125 (154)
.|...+.+++
T Consensus 40 lqri~qsede 49 (90)
T 1zza_A 40 LQRISQSEDE 49 (90)
T ss_dssp SCSSCSSCCC
T ss_pred HHHHhccccc
Confidence 4444444443
No 28
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=21.96 E-value=81 Score=18.94 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=14.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
+..|..=+++++++++..++.++-+
T Consensus 17 ~tLRigGLifA~vLfi~GI~iilS~ 41 (74)
T 2zxe_G 17 YRLRVVGLIVAAVLCVIGIIILLAG 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHheeccchhHHHHHHHHHHHHHcC
Confidence 3455566666666666666555543
No 29
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein, transporter, enzyme IIC, phosphoenolpyruva phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A {Bacillus cereus}
Probab=21.84 E-value=18 Score=29.37 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=13.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
++|+...+ .....+++.++++-|.
T Consensus 396 g~~~~~il-~~~~~~i~~~iy~PF~ 419 (442)
T 3qnq_A 396 GKISGVIL-QLVNFALAFVIYLPFL 419 (442)
T ss_dssp SCTHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CcHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45876644 3444555555555554
No 30
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=21.59 E-value=60 Score=24.85 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=13.3
Q ss_pred cchHHHHHHHHHHHH-HHHHHHHHhc
Q psy3469 88 AAWRVVFVAAAVVYL-FSSTFYIFAA 112 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~-i~~~~~~~~~ 112 (154)
.+|++.|++..++++ ++.+.+++|+
T Consensus 309 l~~~~gy~~~l~~m~~~~~~~~~~fk 334 (339)
T 4ev6_A 309 ANNPQGFWLVMALMVVIIMIFVYIFR 334 (339)
T ss_dssp SSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 456676665544444 4444454554
No 31
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=20.79 E-value=1.5e+02 Score=17.94 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCC
Q psy3469 90 WRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNNDAP 127 (154)
Q Consensus 90 ~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~~~~~ 127 (154)
|....++.+..+.++...+ ..++.--+|+.-+-.+.
T Consensus 37 YGn~~L~~Ga~FC~a~W~y--~~TQ~GIeWnlSPVGrV 72 (80)
T 2y69_K 37 YGNAVLASGATFCVAVWVY--MATQIGIEWNPSPVGRV 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHSCCCCCCCCTTTC
T ss_pred cCceeeecchhHHHhhHHH--hheecceeecCCccccc
Confidence 5556666666555555444 44445557776444433
No 32
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=20.65 E-value=29 Score=23.84 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=17.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 87 QAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 87 ~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
++.|..+|.....+..++++++++..
T Consensus 75 ~gewK~v~g~v~~~i~~s~~~f~~~r 100 (147)
T 1v54_D 75 TNEWKTVVGAAMFFIGFTALLLIWEK 100 (147)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 36788887766666666666665543
Done!