Query psy3469
Match_columns 154
No_of_seqs 123 out of 1146
Neff 8.3
Searched_HMMs 13730
Date Fri Aug 16 17:28:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3469.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3469hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 98.9 2.2E-09 1.6E-13 83.2 10.1 120 4-126 95-218 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 98.8 1.2E-08 8.7E-13 76.9 10.4 107 4-115 295-403 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 98.6 6.2E-08 4.5E-12 74.8 7.8 87 23-113 344-432 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 96.1 0.0013 9.8E-08 48.2 2.6 57 55-116 136-192 (417)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 27.0 28 0.002 15.5 3.3 17 100-116 11-27 (30)
6 d2iuba2 f.17.3.1 (A:286-349) M 19.1 35 0.0025 18.1 2.2 19 95-113 44-62 (64)
7 d1v54d_ f.23.1.1 (D:) Mitochon 14.1 25 0.0018 22.5 0.7 26 87-112 72-97 (144)
8 d1i2ta_ a.144.1.1 (A:) hyperpl 10.1 70 0.0051 17.0 1.7 20 43-62 9-28 (61)
9 d1otsa_ f.20.1.1 (A:) Clc chlo 8.3 3.5E+02 0.026 19.3 7.4 27 58-84 160-186 (444)
10 d1h2sa_ f.13.1.1 (A:) Sensory 8.2 2.2E+02 0.016 18.6 4.3 25 88-112 31-55 (225)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.94 E-value=2.2e-09 Score=83.16 Aligned_cols=120 Identities=14% Similarity=0.162 Sum_probs=86.0
Q ss_pred cchhHHHHHHHHhhcC---CChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHHHhHhhhhhhh
Q psy3469 4 GQYGPAVCLVAASYTG---CDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLAGLLAPIIAGY 79 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg~~i~P~i~G~ 79 (154)
++++.+++.++.++.. .+.+..++...+...+.+...+.....+.|..| ++|+.+.|+.+....+|..++|.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 174 (447)
T d1pw4a_ 95 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 174 (447)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhh
Confidence 4445555555554432 133334444444444556666777788999876 779999999999999999999999998
Q ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCC
Q psy3469 80 VIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQPWDNPNNDA 126 (154)
Q Consensus 80 i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~q~w~~~~~~~ 126 (154)
+.+. ..+|++.|++.+.+.++..++.+++.++.+++...++.++
T Consensus 175 ~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (447)
T d1pw4a_ 175 GMAW---FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE 218 (447)
T ss_dssp HHHH---TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT
T ss_pred Hhhh---hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhh
Confidence 8763 3679999999998888888888888777776666555544
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=98.83 E-value=1.2e-08 Score=76.93 Aligned_cols=107 Identities=15% Similarity=0.153 Sum_probs=81.6
Q ss_pred cchhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHH-HHHHHHHHhHhhhhhhhcc
Q psy3469 4 GQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFT-NCLANLAGLLAPIIAGYVI 81 (154)
Q Consensus 4 g~~~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~-~~~~~lg~~i~P~i~G~i~ 81 (154)
+.++.+++.+.+.+.+ +.+..+....+...+.+...+..++.++|..| ++||++.|+. +....+|.+++|.+.|++.
T Consensus 295 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~ 373 (417)
T d1pv7a_ 295 AGTIMSVRIIGSSFAT-SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665 66555555555555566667888889999877 6799999985 5667899999999999999
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHhccCC
Q psy3469 82 QGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGD 115 (154)
Q Consensus 82 ~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~ 115 (154)
|. .+|+..|++.+++.++..++..++.+++
T Consensus 374 ~~----~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 374 ES----IGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HH----HCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HH----HCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 84 7899999999999888887777766444
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.58 E-value=6.2e-08 Score=74.76 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhcccCc-chHHHHHHHHHHHHHHH-HhHhhhhhhhcccCcccccchHHHHHHHHHH
Q psy3469 23 YLTVGILTIGLGFNGAVYSGFKVNHLDISP-RFAGILMSFTNCLANLA-GLLAPIIAGYVIQGKPTQAAWRVVFVAAAVV 100 (154)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~~~~~~~~d~~p-~~~g~~~g~~~~~~~lg-~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~ 100 (154)
+..++++.+..+..+...+..+....|..| +.+|++.|+.+.+++++ .+++|.+.|++.+. .+|+..|++.+++
T Consensus 344 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~----~g~~~~~~~~~~~ 419 (447)
T d1pw4a_ 344 TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF----FGWDGGFMVMIGG 419 (447)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----SCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hChHHHHHHHHHH
Confidence 333333333333344445667778889887 66999999999999885 56689999999985 6799999998888
Q ss_pred HHHHHHHHHHhcc
Q psy3469 101 YLFSSTFYIFAAS 113 (154)
Q Consensus 101 ~~i~~~~~~~~~~ 113 (154)
.+++.++..++..
T Consensus 420 ~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 420 SILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888776666653
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=96.05 E-value=0.0013 Score=48.22 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCc
Q psy3469 55 AGILMSFTNCLANLAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116 (154)
Q Consensus 55 ~g~~~g~~~~~~~lg~~i~P~i~G~i~~~~~~~~~~~~~F~~~~~~~~i~~~~~~~~~~~~~ 116 (154)
+....+........+..++|.+.|.+.+ .+|...+........+..+...++.++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T d1pv7a_ 136 SNFEFGRARMFGCVGWALGASIVGIMFT-----INNQFVFWLGSGCALILAVLLFFAKTDAP 192 (417)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHHSSCCCSC
T ss_pred hHHHHHHHhhhhcccccccccccccccc-----ccccccccchhhHHHHHHHHHHHHhcccc
Confidence 4556677788888899999999999987 45666666666666666655555554443
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=27.01 E-value=28 Score=15.50 Aligned_cols=17 Identities=6% Similarity=0.106 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhccCCc
Q psy3469 100 VYLFSSTFYIFAASGDR 116 (154)
Q Consensus 100 ~~~i~~~~~~~~~~~~~ 116 (154)
.++++..++.+|.++.+
T Consensus 11 ac~i~lfffaiffrepp 27 (30)
T d2axtt1 11 ACIIALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 34566666666665543
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=19.12 E-value=35 Score=18.09 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q psy3469 95 VAAAVVYLFSSTFYIFAAS 113 (154)
Q Consensus 95 ~~~~~~~~i~~~~~~~~~~ 113 (154)
+++++...++.+.++++++
T Consensus 44 ~~~~~~~~~~~~~~~~f~r 62 (64)
T d2iuba2 44 VVLAVMGVIAVIMVVYFKK 62 (64)
T ss_dssp HHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3344444555555555543
No 7
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.05 E-value=25 Score=22.46 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=17.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 87 QAAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 87 ~~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
++.|..+|........++++++++..
T Consensus 72 ~gewK~v~g~~~~~i~~s~~i~~~~r 97 (144)
T d1v54d_ 72 TNEWKTVVGAAMFFIGFTALLLIWEK 97 (144)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888776666666666665543
No 8
>d1i2ta_ a.144.1.1 (A:) hyperplastic discs protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.09 E-value=70 Score=17.03 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=12.8
Q ss_pred hhhhhcccCcchHHHHHHHH
Q psy3469 43 FKVNHLDISPRFAGILMSFT 62 (154)
Q Consensus 43 ~~~~~~d~~p~~~g~~~g~~ 62 (154)
.|..+..+.|+.+|.++|+.
T Consensus 9 Ly~~V~~~~p~~A~KITGML 28 (61)
T d1i2ta_ 9 LYPRVQAMQPAFASKITGML 28 (61)
T ss_dssp HHHHHHHHCGGGHHHHHHHH
T ss_pred hHHHHHHHChhhhcchhHHH
Confidence 34556666777777777754
No 9
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=8.26 E-value=3.5e+02 Score=19.33 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhcccCc
Q psy3469 58 LMSFTNCLANLAGLLAPIIAGYVIQGK 84 (154)
Q Consensus 58 ~~g~~~~~~~lg~~i~P~i~G~i~~~~ 84 (154)
..=.......++.+++.++.|.+...|
T Consensus 160 ~l~~~GaaAglaa~F~aPlaG~lFa~E 186 (444)
T d1otsa_ 160 TLLATGAAAGLAAAFNAPLAGILFIIE 186 (444)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCCchhhhhhhhH
Confidence 334467778899999999999876654
No 10
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=8.23 E-value=2.2e+02 Score=18.60 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=16.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhc
Q psy3469 88 AAWRVVFVAAAVVYLFSSTFYIFAA 112 (154)
Q Consensus 88 ~~~~~~F~~~~~~~~i~~~~~~~~~ 112 (154)
.++|......+.+..+++..+....
T Consensus 31 ~~~r~~~~~~~~It~iAa~~Y~~m~ 55 (225)
T d1h2sa_ 31 SGERRYYVTLVGISGIAAVAYVVMA 55 (225)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHHHH
Confidence 4566666666677777777776554
Done!