RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3469
         (154 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 39.3 bits (90), Expect = 8e-05
 Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 5/118 (4%)

Query: 1   MILGQYGPAVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMS 60
             +     A  +   +  G      + ++ IG    G V             + AG    
Sbjct: 323 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 382

Query: 61  FTNCLANLAG-LLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ 117
           FT     L G + A  I GY +        W   F+      + +    I    G+++
Sbjct: 383 FTGLFGYLGGSVAASAIVGYTVDF----FGWDGGFMVMIGGSILAVILLIVVMIGEKR 436


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 16/109 (14%), Positives = 38/109 (34%), Gaps = 5/109 (4%)

Query: 9   AVCLVAASYTGCDPYLTVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLAN- 67
           +V ++ +S+      + +            +   FK        RF+  +     C    
Sbjct: 300 SVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ 359

Query: 68  LAGLLAPIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDR 116
           LA +   ++AG + +       ++  ++   +V L  +   +F  SG  
Sbjct: 360 LAMIFMSVLAGNMYE----SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404


>d2cb2a1 d.58.4.17 (A:2-308) Sulfur oxygenase reductase SOR
          {Acidianus ambivalens [TaxId: 2283]}
          Length = 307

 Score = 28.3 bits (63), Expect = 0.41
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 2  ILGQYGPAVCLVAAS---YTGCDPYLTVGILTIGLGFNGA 38
          +    GP VC+V A    + G   ++ +GIL  G  + GA
Sbjct: 21 MFASVGPKVCMVTARHPGFVGFQNHIQIGILPFGNRYGGA 60


>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId:
          10678]}
          Length = 158

 Score = 27.0 bits (59), Expect = 0.69
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 15 ASYTGC--DPYL-TVGILTIGLGFNGAVYSGFKVNHLDISPRFAGILMSFTNCLANL 68
           +  GC  DPY+   G+ T G+G    V  G +     I+  +   ++    C+   
Sbjct: 11 GNAEGCRRDPYMCPAGVWTDGIGNTHGVTPGVRKTDQQIAADWEKNILIAERCINQH 67


>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 739

 Score = 26.0 bits (57), Expect = 2.8
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 73  APIIAGYVIQGKPTQAAWRVVFVAAAVVYLFSSTFYIFAASGDRQ 117
           + +I GY   G    + W  +F+   +V+     F + +  G  Q
Sbjct: 635 SQLINGYNPFGTNNLSVWAWMFLFGHLVWATGFMF-LISWRGYWQ 678


>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
          inhibitor, GDI {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 297

 Score = 24.0 bits (50), Expect = 9.5
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 6/38 (15%)

Query: 31 IGLGFNGAV------YSGFKVNHLDISPRFAGILMSFT 62
          +G G    +        G KV H+D    + G   S T
Sbjct: 11 LGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVT 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 552,284
Number of extensions: 23264
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 8
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)