Query psy3471
Match_columns 227
No_of_seqs 225 out of 293
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 17:32:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1879|consensus 100.0 4E-83 8.6E-88 650.4 7.7 168 9-176 1280-1447(1470)
2 cd06432 GT8_HUGT1_C_like The C 100.0 2.3E-44 4.9E-49 317.0 7.3 150 9-158 99-248 (248)
3 KOG1879|consensus 99.9 2.1E-26 4.5E-31 236.7 5.6 59 169-227 1229-1287(1470)
4 cd00505 Glyco_transf_8 Members 99.9 3E-23 6.5E-28 179.6 4.7 133 9-150 99-240 (246)
5 cd04194 GT8_A4GalT_like A4GalT 99.8 1E-20 2.2E-25 162.8 2.2 129 9-150 99-242 (248)
6 PRK15171 lipopolysaccharide 1, 99.7 1.2E-18 2.7E-23 159.8 3.2 130 9-149 124-265 (334)
7 cd06429 GT8_like_1 GT8_like_1 99.7 1.5E-17 3.1E-22 148.4 3.4 95 9-130 117-212 (257)
8 PLN02870 Probable galacturonos 99.7 3.7E-17 7.9E-22 158.6 4.1 159 9-175 346-521 (533)
9 PF01501 Glyco_transf_8: Glyco 99.6 1.1E-17 2.4E-22 139.4 -0.8 135 5-149 97-241 (250)
10 PLN02659 Probable galacturonos 99.6 6.2E-17 1.3E-21 157.0 4.0 160 9-175 347-522 (534)
11 PLN02829 Probable galacturonos 99.6 1.4E-16 3.1E-21 156.7 5.6 160 9-176 460-629 (639)
12 PLN02867 Probable galacturonos 99.6 1.8E-16 3.9E-21 154.0 6.0 136 9-150 348-501 (535)
13 PLN02742 Probable galacturonos 99.6 1.1E-16 2.4E-21 155.4 4.4 160 9-176 356-525 (534)
14 cd06431 GT8_LARGE_C LARGE cata 99.6 1E-16 2.2E-21 144.2 3.4 132 9-149 101-246 (280)
15 PLN02769 Probable galacturonos 99.6 1.8E-16 4E-21 156.2 4.7 156 9-174 455-618 (629)
16 PLN02523 galacturonosyltransfe 99.6 3.1E-16 6.6E-21 152.8 5.0 155 9-174 380-547 (559)
17 PLN02718 Probable galacturonos 99.6 6.6E-16 1.4E-20 151.7 4.8 157 9-174 421-591 (603)
18 PLN02910 polygalacturonate 4-a 99.6 7.2E-16 1.6E-20 151.8 4.8 158 9-174 478-645 (657)
19 cd06430 GT8_like_2 GT8_like_2 99.6 6.8E-16 1.5E-20 141.5 4.1 143 9-165 100-268 (304)
20 COG1442 RfaJ Lipopolysaccharid 99.4 2.9E-14 6.3E-19 131.8 2.7 111 9-130 101-213 (325)
21 PLN00176 galactinol synthase 99.2 2.3E-12 5E-17 119.6 2.0 135 3-149 109-260 (333)
22 cd02537 GT8_Glycogenin Glycoge 99.2 7.6E-12 1.7E-16 109.0 2.6 110 9-150 93-208 (240)
23 cd06914 GT8_GNT1 GNT1 is a fun 99.0 1E-10 2.2E-15 106.3 2.5 119 4-154 89-236 (278)
24 cd06432 GT8_HUGT1_C_like The C 98.7 2.2E-08 4.7E-13 88.8 4.5 75 143-226 31-105 (248)
25 cd00505 Glyco_transf_8 Members 97.2 0.00026 5.6E-09 61.5 3.2 52 175-227 54-106 (246)
26 cd04194 GT8_A4GalT_like A4GalT 96.4 0.0026 5.7E-08 54.9 3.4 50 176-226 55-105 (248)
27 PF03407 Nucleotid_trans: Nucl 89.4 0.23 5E-06 41.8 2.0 99 6-128 66-172 (212)
28 COG5597 Alpha-N-acetylglucosam 84.3 0.36 7.8E-06 45.9 0.4 27 3-29 164-191 (368)
29 cd06431 GT8_LARGE_C LARGE cata 77.1 1.5 3.2E-05 40.0 1.8 21 206-226 87-107 (280)
30 PRK15171 lipopolysaccharide 1, 71.0 2.5 5.4E-05 39.3 1.8 52 173-226 77-130 (334)
31 PF01501 Glyco_transf_8: Glyco 67.7 4.4 9.5E-05 33.6 2.4 21 204-226 88-108 (250)
32 cd06430 GT8_like_2 GT8_like_2 66.6 7.5 0.00016 36.4 3.9 19 207-226 88-106 (304)
33 cd06429 GT8_like_1 GT8_like_1 62.5 4.4 9.4E-05 36.6 1.6 21 206-227 104-124 (257)
34 PLN02870 Probable galacturonos 39.0 18 0.00039 36.6 1.7 19 207-226 334-352 (533)
35 PLN02829 Probable galacturonos 38.5 20 0.00043 37.0 2.0 19 207-226 448-466 (639)
36 COG1442 RfaJ Lipopolysaccharid 38.5 22 0.00047 33.6 2.1 28 198-226 77-107 (325)
37 PLN02659 Probable galacturonos 38.2 19 0.0004 36.5 1.7 19 207-226 335-353 (534)
38 PLN02769 Probable galacturonos 34.4 23 0.00049 36.5 1.6 21 204-226 441-461 (629)
39 PF13632 Glyco_trans_2_3: Glyc 33.4 29 0.00064 27.9 1.9 74 10-84 3-88 (193)
40 PLN02867 Probable galacturonos 31.0 29 0.00063 35.1 1.7 18 208-226 337-354 (535)
41 PLN02523 galacturonosyltransfe 30.7 31 0.00068 35.1 1.9 21 204-226 366-386 (559)
42 cd02537 GT8_Glycogenin Glycoge 29.4 97 0.0021 27.0 4.6 20 205-227 81-100 (240)
43 PLN02742 Probable galacturonos 29.0 34 0.00074 34.6 1.8 23 203-226 340-362 (534)
44 PLN02910 polygalacturonate 4-a 27.1 37 0.00079 35.2 1.7 18 208-226 467-484 (657)
45 PF09650 PHA_gran_rgn: Putativ 25.2 93 0.002 23.7 3.3 25 158-182 11-35 (87)
46 smart00368 LRR_RI Leucine rich 23.6 83 0.0018 18.8 2.2 21 142-162 4-24 (28)
47 PLN02718 Probable galacturonos 22.0 58 0.0013 33.5 2.0 22 203-226 406-427 (603)
No 1
>KOG1879|consensus
Probab=100.00 E-value=4e-83 Score=650.41 Aligned_cols=168 Identities=76% Similarity=1.272 Sum_probs=165.4
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCcccccCCcccchhhhhhhcCCCCCcccceeeeeHHHHHHHhhhhH
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSRTEMDGFRFWNQGYWRNHLQGRKYHISALYVVDLKRFRKIAAGDR 88 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~~e~~G~~fW~~GYW~~~L~~~~Y~~Sgl~vvDL~kfR~~~~Gd~ 88 (227)
+.|||||||||+||.||++|||+||||||||||+||+||+|||||++|||++||.|++|||||+|||||+|||+++|||+
T Consensus 1280 vIfVDADQIVR~DL~EL~dfdl~GaPygYtPfCdsR~EMDGyRFWK~GYW~~hL~grkYHISALYVVDLkrFReiaAGDr 1359 (1470)
T KOG1879|consen 1280 VIFVDADQIVRADLKELMDFDLGGAPYGYTPFCDSRREMDGYRFWKQGYWKKHLRGRKYHISALYVVDLKRFREIAAGDR 1359 (1470)
T ss_pred EEEEcchHhhhhhhHHHHhcccCCCccccCccccccccccchhHHhhhHHHHHhccCccccceeeeeeHHHHHhcccchH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCccccCCcccCccccccccccCchhhhhhccCCcccccccceeccccCCCcchhHHHHHHHhchhH
Q psy3471 89 LRGQYQALSQDPNSLSNLDQDLPNNMIHQVPIKSLPQEWLWCETWCDDRSKSSAKTIDLCNNPLTKEAKLSAAMRILYSV 168 (227)
Q Consensus 89 LR~~Yq~ls~dp~sL~nlDQDLlN~~q~~vpI~sLp~ewlwcetwc~~~~~~~Ak~idlc~np~~ke~kl~~a~r~ipew 168 (227)
||++||+||+|||||+||||||||+|||+|||+||||+||||||||+|++|++||||||||||+||||||++|+||+|||
T Consensus 1360 LR~qYQ~LS~DPNSLsNLDQDLPNnm~hqVpIkSLPqeWLWCETWC~d~skkkAktIDLCnNP~TKEpKL~~A~Riv~EW 1439 (1470)
T KOG1879|consen 1360 LRGQYQALSQDPNSLSNLDQDLPNNMQHQVPIKSLPQEWLWCETWCDDESKKKAKTIDLCNNPLTKEPKLDAARRIVSEW 1439 (1470)
T ss_pred HHHHHHhhcCCcchhhhccccccccceeecccccCCcchhhhhhhcCchhhhhchhhhhhcCccccchhhHHHhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q psy3471 169 YAFIFRAY 176 (227)
Q Consensus 169 ~~yia~~y 176 (227)
++|+++..
T Consensus 1440 ~dyD~Ei~ 1447 (1470)
T KOG1879|consen 1440 TDYDAEIR 1447 (1470)
T ss_pred cccchHHH
Confidence 99988854
No 2
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=100.00 E-value=2.3e-44 Score=317.03 Aligned_cols=150 Identities=79% Similarity=1.350 Sum_probs=144.4
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCcccccCCcccchhhhhhhcCCCCCcccceeeeeHHHHHHHhhhhH
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSRTEMDGFRFWNQGYWRNHLQGRKYHISALYVVDLKRFRKIAAGDR 88 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~~e~~G~~fW~~GYW~~~L~~~~Y~~Sgl~vvDL~kfR~~~~Gd~ 88 (227)
+.|+|||+||++||+|||++||+|+++|+|++|.+..++.+.++|.+|||++.+++++||||||+||||++||+.+++++
T Consensus 99 vLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~~~~~~~~~l~~~~YfNSGVmliNL~~wR~~~i~~~ 178 (248)
T cd06432 99 VIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFWKQGYWKSHLRGRPYHISALYVVDLKRFRRIAAGDR 178 (248)
T ss_pred EEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhhhhhhhhhhcCCCCccceeeEEEeHHHHHHHhHHHH
Confidence 56999999999999999999999999999999998777888899999999999988889999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCccccCCcccCccccccccccCchhhhhhccCCcccccccceeccccCCCcchhHH
Q psy3471 89 LRGQYQALSQDPNSLSNLDQDLPNNMIHQVPIKSLPQEWLWCETWCDDRSKSSAKTIDLCNNPLTKEAKL 158 (227)
Q Consensus 89 LR~~Yq~ls~dp~sL~nlDQDLlN~~q~~vpI~sLp~ewlwcetwc~~~~~~~Ak~idlc~np~~ke~kl 158 (227)
++.+|+.++.++.+|.+.|||++|.+++..||.+||.+|+||++||.++.++.|+||+||+||+|||||+
T Consensus 179 ~~~~~~~l~~~~~~l~~~DQDiLN~v~~~~~i~~Lp~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (248)
T cd06432 179 LRGQYQQLSQDPNSLANLDQDLPNNMQHQVPIFSLPQEWLWCETWCSDESKKKAKTIDLCNNPLTKEPKL 248 (248)
T ss_pred HHHHHHHHhcCCCccccCCchhhHHHhccCCeEECChHHHHHHHHhcccccCccceeecccCCCCCCCCC
Confidence 9999999999999999999999999999888999999999999999999999999999999999999984
No 3
>KOG1879|consensus
Probab=99.92 E-value=2.1e-26 Score=236.67 Aligned_cols=59 Identities=80% Similarity=1.418 Sum_probs=57.4
Q ss_pred HHHHHHHccceeeEeccccchhhhhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEecCCC
Q psy3471 169 YAFIFRAYKFEYELVQYKWPRWLTQQTEKQRIIWGYKILFLDVLFPLDVKKIIFVDADQ 227 (227)
Q Consensus 169 ~~yia~~y~fe~e~v~y~WP~wl~~q~~~~r~~~~~kiLFLDvlfp~~~~~vi~~d~dq 227 (227)
-++||++||||||+|+||||+|||+|+||||+||||||||||||||++|+|||||||||
T Consensus 1229 iP~mA~eYnFeyElv~YkWPrWLhqQ~EKQRiiWgyKILFLDVLFPL~v~KvIfVDADQ 1287 (1470)
T KOG1879|consen 1229 IPHMAKEYNFEYELVQYKWPRWLHQQTEKQRIIWGYKILFLDVLFPLNVDKVIFVDADQ 1287 (1470)
T ss_pred HHHHHHHhCceEEEEEecCchhhhhhhhhhhhhhhhhhhhhhhccccccceEEEEcchH
Confidence 35799999999999999999999999999999999999999999999999999999998
No 4
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=99.87 E-value=3e-23 Score=179.58 Aligned_cols=133 Identities=32% Similarity=0.343 Sum_probs=105.0
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCcccccCCcccchhhhhhhcCCCCCcccceeeeeHHHHHHHhh-hh
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSRTEMDGFRFWNQGYWRNHLQGRKYHISALYVVDLKRFRKIAA-GD 87 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~~e~~G~~fW~~GYW~~~L~~~~Y~~Sgl~vvDL~kfR~~~~-Gd 87 (227)
+.|+|||+||++||.|||++||+|+++|+||.|.......++++ |.....+.+||||||+|+||++||+... ++
T Consensus 99 vlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~-----~~~~~~~~~yfNsGVmlinl~~~r~~~~~~~ 173 (246)
T cd00505 99 ILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQ-----KRSHLAGPDYFNSGVFVVNLSKERRNQLLKV 173 (246)
T ss_pred EEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhc-----ccCCCCCCCceeeeeEEEechHHHHHHHHHH
Confidence 56999999999999999999999999999999876444443332 2222335679999999999999986654 44
Q ss_pred HHHHHHHhhcCCCCCCccccCCcccCccccc--cccccCchhhhhhccCCcc------cccccceeccccC
Q psy3471 88 RLRGQYQALSQDPNSLSNLDQDLPNNMIHQV--PIKSLPQEWLWCETWCDDR------SKSSAKTIDLCNN 150 (227)
Q Consensus 88 ~LR~~Yq~ls~dp~sL~nlDQDLlN~~q~~v--pI~sLp~ewlwcetwc~~~------~~~~Ak~idlc~n 150 (227)
.+...++. ..++...|||++|.++.+. +|..||.+||++.++|... ..+++|+|-+|++
T Consensus 174 ~~~~~~~~----~~~~~~~DQd~LN~~~~~~~~~i~~L~~~wN~~~~~~~~~~~~~~~~~~~~~iiHy~g~ 240 (246)
T cd00505 174 ALEKWLQS----LSSLSGGDQDLLNTFFKQVPFIVKSLPCIWNVRLTGCYRSLNCFKAFVKNAKVIHFNGP 240 (246)
T ss_pred HHHHHHhh----cccCccCCcHHHHHHHhcCCCeEEECCCeeeEEecCccccccchhhhcCCCEEEEeCCC
Confidence 44444444 2478889999999999774 4999999999999998654 5678899999976
No 5
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=99.80 E-value=1e-20 Score=162.80 Aligned_cols=129 Identities=20% Similarity=0.230 Sum_probs=104.8
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCcccccCCcccchhhhhhhcC---CCCCcccceeeeeHHHHHHHhh
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSRTEMDGFRFWNQGYWRNHLQ---GRKYHISALYVVDLKRFRKIAA 85 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~~e~~G~~fW~~GYW~~~L~---~~~Y~~Sgl~vvDL~kfR~~~~ 85 (227)
+.|+|||+||++||.|||++|++|+++|+||.|..... ++++..++ +.+|||||++|+|+++||+.++
T Consensus 99 vlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~---------~~~~~~~~~~~~~~yfNsGv~l~nl~~~r~~~~ 169 (248)
T cd04194 99 VLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQE---------KKRKRRLGGYDDGSYFNSGVLLINLKKWREENI 169 (248)
T ss_pred EEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHH---------HHHHhhcCCCcccceeeecchheeHHHHHHhhh
Confidence 57999999999999999999999999999998864221 11111222 4579999999999999999999
Q ss_pred hhHHHHHHHhhcCCCCCCccccCCcccCccccccccccCchhhhhhccCCccc------------ccccceeccccC
Q psy3471 86 GDRLRGQYQALSQDPNSLSNLDQDLPNNMIHQVPIKSLPQEWLWCETWCDDRS------------KSSAKTIDLCNN 150 (227)
Q Consensus 86 Gd~LR~~Yq~ls~dp~sL~nlDQDLlN~~q~~vpI~sLp~ewlwcetwc~~~~------------~~~Ak~idlc~n 150 (227)
+++++..++. .+.++.+.|||++|.++.+ .+..||.+||+.-+++.... .+.+++|=+|..
T Consensus 170 ~~~~~~~~~~---~~~~~~~~DQd~LN~~~~~-~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~g~ 242 (248)
T cd04194 170 TEKLLELIKE---YGGRLIYPDQDILNAVLKD-KILYLPPRYNFQTGFYYLLKKKSKEEQELEEARKNPVIIHYTGS 242 (248)
T ss_pred HHHHHHHHHh---CCCceeeCChHHHHHHHhC-CeEEcCcccccchhHhHHhhccchhHHHHHHHhcCCEEEEeCCC
Confidence 9999988776 4557888999999999977 79999999999999987543 445666666643
No 6
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=99.73 E-value=1.2e-18 Score=159.76 Aligned_cols=130 Identities=15% Similarity=0.209 Sum_probs=95.3
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceeccc-CCCCcccccCCcccchhhhhhhcC----CCCCcccceeeeeHHHHHHH
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVP-FCDSRTEMDGFRFWNQGYWRNHLQ----GRKYHISALYVVDLKRFRKI 83 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp-~c~~~~e~~G~~fW~~GYW~~~L~----~~~Y~~Sgl~vvDL~kfR~~ 83 (227)
+.|+|||+||.+||+|||++||+|..+|+|. .+.+ .+|... +..|+ +..||||||+||||++||+.
T Consensus 124 vLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~-------~~~~~~--~~~l~~~~~~~~YFNsGVlliNl~~wRe~ 194 (334)
T PRK15171 124 VLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDA-------EWWSKR--AQSLQTPGLASGYFNSGFLLINIPAWAQE 194 (334)
T ss_pred EEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccch-------hHHHHH--HHhcCCccccccceecceEEEcHHHHHHh
Confidence 5799999999999999999999978788874 3321 011111 11222 23599999999999999999
Q ss_pred hhhhHHHHHHHhhcCCCCCCccccCCcccCccccccccccCchhhhhhcc-------CCcccccccceecccc
Q psy3471 84 AAGDRLRGQYQALSQDPNSLSNLDQDLPNNMIHQVPIKSLPQEWLWCETW-------CDDRSKSSAKTIDLCN 149 (227)
Q Consensus 84 ~~Gd~LR~~Yq~ls~dp~sL~nlDQDLlN~~q~~vpI~sLp~ewlwcetw-------c~~~~~~~Ak~idlc~ 149 (227)
+++++++...... .-...+...|||++|.++.+ .+..||.+||.+-+. +.......+++|=+|+
T Consensus 195 ~i~~k~~~~l~~~-~~~~~~~~~DQDiLN~~~~~-~~~~L~~~wN~~~~~~~~~~~~~~~~~~~~p~IIHy~G 265 (334)
T PRK15171 195 NISAKAIEMLADP-EIVSRITHLDQDVLNILLAG-KVKFIDAKYNTQFSLNYELKDSVINPVNDETVFIHYIG 265 (334)
T ss_pred hHHHHHHHHHhcc-ccccceeecChhHHHHHHcC-CeEECCHhhCCccchhHHHHhcccccccCCCEEEEECC
Confidence 9999999776531 11236778899999999976 999999999976433 2222234567777775
No 7
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.68 E-value=1.5e-17 Score=148.37 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=81.1
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCcccccCCcccchhhhhhhcCCCCCcccceeeeeHHHHHHHhhhhH
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSRTEMDGFRFWNQGYWRNHLQGRKYHISALYVVDLKRFRKIAAGDR 88 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~~e~~G~~fW~~GYW~~~L~~~~Y~~Sgl~vvDL~kfR~~~~Gd~ 88 (227)
+.|+|||+||.+||+|||++||+|+++|+|+. ||||||+|+||++||+.++.++
T Consensus 117 vlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d--------------------------yfNsGV~linl~~wr~~~i~~~ 170 (257)
T cd06429 117 VIYLDDDVVVQKDLTELWNTDLGGGVAGAVET--------------------------SWNPGVNVVNLTEWRRQNVTET 170 (257)
T ss_pred EEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh--------------------------hcccceEEEeHHHHHhccHHHH
Confidence 56999999999999999999999999999986 8999999999999999999999
Q ss_pred HHHHHHhhcCCC-CCCccccCCcccCccccccccccCchhhhh
Q psy3471 89 LRGQYQALSQDP-NSLSNLDQDLPNNMIHQVPIKSLPQEWLWC 130 (227)
Q Consensus 89 LR~~Yq~ls~dp-~sL~nlDQDLlN~~q~~vpI~sLp~ewlwc 130 (227)
+........... ......|||++|.++.+ .+..||.+||..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~dqd~ln~~~~~-~~~~L~~~wN~~ 212 (257)
T cd06429 171 YEKWMELNQEEEVTLWKLITLPPGLIVFYG-LTSPLDPSWHVR 212 (257)
T ss_pred HHHHHHHhhhcccchhhcCCccHHHHHccC-eeEECChHHccc
Confidence 987765432211 22344589999999966 999999999965
No 8
>PLN02870 Probable galacturonosyltransferase
Probab=99.66 E-value=3.7e-17 Score=158.56 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=109.4
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCcc------cccCCcccc--hhhhhhhcC-CCCCcccceeeeeHHH
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSRT------EMDGFRFWN--QGYWRNHLQ-GRKYHISALYVVDLKR 79 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~~------e~~G~~fW~--~GYW~~~L~-~~~Y~~Sgl~vvDL~k 79 (227)
+.|+|||.||.+||+|||++||+|+++|+|+.|.... +..+ |-+ .-.-+..+. +.+|++||++||||++
T Consensus 346 VLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~--YfNfs~p~i~~~fd~~~cyfNSGVlLINL~~ 423 (533)
T PLN02870 346 VVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRN--YFNFSHPLIAKNLDPEECAWAYGMNIFDLRA 423 (533)
T ss_pred EEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhh--hcccccchhhcccCcccceeeccchhccHHH
Confidence 5699999999999999999999999999999996421 1111 111 111122333 4579999999999999
Q ss_pred HHHHhhhhHHHHHHHhhcCCCCCCccccCCccc---CccccccccccCchhhhhhccCC----cccccccceeccccCCC
Q psy3471 80 FRKIAAGDRLRGQYQALSQDPNSLSNLDQDLPN---NMIHQVPIKSLPQEWLWCETWCD----DRSKSSAKTIDLCNNPL 152 (227)
Q Consensus 80 fR~~~~Gd~LR~~Yq~ls~dp~sL~nlDQDLlN---~~q~~vpI~sLp~ewlwcetwc~----~~~~~~Ak~idlc~np~ 152 (227)
||+.++.+++....+.... ..+...|||.+| .++.+ .++.|+.+|+.+.-=.. .+..++|++|-++++-.
T Consensus 424 WRe~nITek~~~~l~~n~~--~~l~l~DQdaLp~~livf~g-~v~~LD~rWN~~gLgy~~~~~~~~i~~aaIIHY~G~~K 500 (533)
T PLN02870 424 WRKTNIRETYHSWLKENLK--SNLTMWKLGTLPPALIAFKG-HVHPIDPSWHMLGLGYQSKTNIESVKKAAVIHYNGQSK 500 (533)
T ss_pred HHHcChHHHHHHHHHhhhh--cCceecccccccHhHHHhcC-ceEECChHHhcCCCCCcccccccccCCcEEEEECCCCC
Confidence 9999999999977655311 235567999996 45544 99999999997643322 23466788888887521
Q ss_pred cchhHHHHH-HHhchhHHHHHHHH
Q psy3471 153 TKEAKLSAA-MRILYSVYAFIFRA 175 (227)
Q Consensus 153 ~ke~kl~~a-~r~ipew~~yia~~ 175 (227)
|=++.+ .+.-+-|..|+..-
T Consensus 501 ---PW~~~~~~~yr~~W~kYl~~s 521 (533)
T PLN02870 501 ---PWLEIGFEHLRPFWTKYVNYS 521 (533)
T ss_pred ---CccccCccchhHHHHHHHccC
Confidence 111111 12455677776653
No 9
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=99.65 E-value=1.1e-17 Score=139.44 Aligned_cols=135 Identities=23% Similarity=0.232 Sum_probs=95.9
Q ss_pred cccc-CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCcccccCCcccchhhhhhh---cCCCCCcccceeeeeHHHH
Q psy3471 5 VDYD-LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSRTEMDGFRFWNQGYWRNH---LQGRKYHISALYVVDLKRF 80 (227)
Q Consensus 5 ~~~~-~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~~e~~G~~fW~~GYW~~~---L~~~~Y~~Sgl~vvDL~kf 80 (227)
.+|| +.|+|||++|++||.+|+++|++|+++|+|+.+.... ++...++... ..+..|+|||++|+|++++
T Consensus 97 ~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~ 170 (250)
T PF01501_consen 97 PDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDN------FPNKRFPFSERKQPGNKPYFNSGVMLFNPSKW 170 (250)
T ss_dssp TTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HH------HHTSTTSSEEECESTTTTSEEEEEEEEEHHHH
T ss_pred hhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhh------hhhcccchhhcccCcccccccCcEEEEeechh
Confidence 3444 5699999999999999999999999999998733211 1111111111 1245799999999999999
Q ss_pred HHHhhhhHHHHHHHhhcCCCCCCccccCCcccCccccccccccCchhhhhhccC------Ccccccccceecccc
Q psy3471 81 RKIAAGDRLRGQYQALSQDPNSLSNLDQDLPNNMIHQVPIKSLPQEWLWCETWC------DDRSKSSAKTIDLCN 149 (227)
Q Consensus 81 R~~~~Gd~LR~~Yq~ls~dp~sL~nlDQDLlN~~q~~vpI~sLp~ewlwcetwc------~~~~~~~Ak~idlc~ 149 (227)
|+....++++...+. ...++...|||++|.++.. ++..||.+||++.+|+ .....+++++|=+++
T Consensus 171 ~~~~~~~~~~~~~~~---~~~~~~~~DQ~~ln~~~~~-~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~iiHy~g 241 (250)
T PF01501_consen 171 RKENILQKLIEWLEQ---NGMKLGFPDQDILNIVFYG-NIKPLPCRYNCQPSWYNQSDDYFNPILEDAKIIHYSG 241 (250)
T ss_dssp HHHHHHHHHHHHHHH---TTTT-SSCHHHHHHHHHTT-GEEEEEGGGSEEHHHHHHTHHHHHHHGCC-SEEE--S
T ss_pred hhhhhhhhhhhhhhh---cccccCcCchHHHhhhccc-eeEEECchhccccccccccchhhHhhcCCeEEEEeCC
Confidence 999999999988655 4447778899999999965 9999999999999999 444567788888876
No 10
>PLN02659 Probable galacturonosyltransferase
Probab=99.65 E-value=6.2e-17 Score=157.00 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=108.2
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCc------ccccCC-cccchhhhhhhcC-CCCCcccceeeeeHHHH
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSR------TEMDGF-RFWNQGYWRNHLQ-GRKYHISALYVVDLKRF 80 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~------~e~~G~-~fW~~GYW~~~L~-~~~Y~~Sgl~vvDL~kf 80 (227)
+.|+|||+||.+||+|||++||+|+++|+|+.|... .++..+ + ......+++.. +.+|++||++||||++|
T Consensus 347 VLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~-~s~p~i~~yFn~~~cYfNsGVlLINLk~W 425 (534)
T PLN02659 347 VVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLN-FSHPLIAKNFDPNECAWAYGMNIFDLEAW 425 (534)
T ss_pred EEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhc-ccchhhhhccCccccceecceeEeeHHHH
Confidence 569999999999999999999999999999998531 111100 0 00111222343 45699999999999999
Q ss_pred HHHhhhhHHHHHHHhhcCCCCCCccccCCccc---CccccccccccCchhhhhhccCCc----ccccccceeccccCCCc
Q psy3471 81 RKIAAGDRLRGQYQALSQDPNSLSNLDQDLPN---NMIHQVPIKSLPQEWLWCETWCDD----RSKSSAKTIDLCNNPLT 153 (227)
Q Consensus 81 R~~~~Gd~LR~~Yq~ls~dp~sL~nlDQDLlN---~~q~~vpI~sLp~ewlwcetwc~~----~~~~~Ak~idlc~np~~ 153 (227)
|+.++.+++....+... + ..+..-|||.+| .++. ..++.|+.+|+...-.... +..+.|++|-++++-.
T Consensus 426 Re~nITek~l~~l~~n~-~-~~l~l~DQdaLp~~LivF~-g~v~~LD~rWN~~gLg~~~~~~~~~i~~paIIHYnG~~K- 501 (534)
T PLN02659 426 RKTNISSTYHHWLEENL-K-SDLSLWQLGTLPPGLIAFH-GHVHVIDPFWHMLGLGYQENTSLADAESAGVVHFNGRAK- 501 (534)
T ss_pred HhcChHHHHHHHHHhcc-c-ccccccccccchHHHHHhc-CCEEECChhheecCCcccccccccccCCcEEEEECCCCC-
Confidence 99999999997776521 1 235566999996 4454 4999999999965433322 2456788888777521
Q ss_pred chhHHHHH-HHhchhHHHHHHHH
Q psy3471 154 KEAKLSAA-MRILYSVYAFIFRA 175 (227)
Q Consensus 154 ke~kl~~a-~r~ipew~~yia~~ 175 (227)
|=++.| .+.-+.|..|+...
T Consensus 502 --PW~~~~~~~yr~~W~kYl~~s 522 (534)
T PLN02659 502 --PWLDIAFPQLRPLWAKYIDSS 522 (534)
T ss_pred --ccccccCCcchhHHHHHhccC
Confidence 111111 13446677776653
No 11
>PLN02829 Probable galacturonosyltransferase
Probab=99.64 E-value=1.4e-16 Score=156.67 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=116.1
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCc-ccccCCcccchhhhhhhcC-CCCCcccceeeeeHHHHHHHhhh
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSR-TEMDGFRFWNQGYWRNHLQ-GRKYHISALYVVDLKRFRKIAAG 86 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~-~e~~G~~fW~~GYW~~~L~-~~~Y~~Sgl~vvDL~kfR~~~~G 86 (227)
+.|+|||.||.+||++||++||+|+++|+|+.|... .+...+-+|.....+++.. ..+||||||+||||++||+.++.
T Consensus 460 VLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nIT 539 (639)
T PLN02829 460 VLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNIT 539 (639)
T ss_pred EEEEeCCEEeCCChHHHHhCCCCCceEEEeccchhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChH
Confidence 579999999999999999999999999999999742 1222222222222233333 45799999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCccccCCcccCcc---ccccccccCchhhhhhccCCc----ccccccceeccccCCCcchhHHH
Q psy3471 87 DRLRGQYQALSQDPNSLSNLDQDLPNNMI---HQVPIKSLPQEWLWCETWCDD----RSKSSAKTIDLCNNPLTKEAKLS 159 (227)
Q Consensus 87 d~LR~~Yq~ls~dp~sL~nlDQDLlN~~q---~~vpI~sLp~ewlwcetwc~~----~~~~~Ak~idlc~np~~ke~kl~ 159 (227)
+++...+ .+..+.. + -|||.+|.++ .+ .|++|+.+|+=|.-.++. +..+.|.+|-.+++. .|=++
T Consensus 540 e~y~~wm-~~n~~r~-L--~dlgaLPp~Ll~F~g-~i~~LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~---KPWle 611 (639)
T PLN02829 540 EVYHSWQ-KLNHDRQ-L--WKLGTLPPGLITFWK-RTYPLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNM---KPWLE 611 (639)
T ss_pred HHHHHHH-HHccCCc-c--ccccCCChHHHHhcC-ceEecChhheecCCCCCcccchhcccCCeEEEECCCC---Ccccc
Confidence 9999554 4433332 2 5899999875 45 899999999999766654 357889999888762 22222
Q ss_pred HH-HHhchhHHHHHHHHc
Q psy3471 160 AA-MRILYSVYAFIFRAY 176 (227)
Q Consensus 160 ~a-~r~ipew~~yia~~y 176 (227)
.+ .+.-+.|..|+....
T Consensus 612 ~~i~~yr~lW~kYl~~~~ 629 (639)
T PLN02829 612 IGIPKYRNYWSKYVDYDQ 629 (639)
T ss_pred CCcccchHHHHHHHhcCc
Confidence 21 236678988876643
No 12
>PLN02867 Probable galacturonosyltransferase
Probab=99.64 E-value=1.8e-16 Score=154.03 Aligned_cols=136 Identities=16% Similarity=0.205 Sum_probs=96.6
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccC--CCCcccccCCcccchhhh-------hhhcC-CCCCcccceeeeeHH
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPF--CDSRTEMDGFRFWNQGYW-------RNHLQ-GRKYHISALYVVDLK 78 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~--c~~~~e~~G~~fW~~GYW-------~~~L~-~~~Y~~Sgl~vvDL~ 78 (227)
+.|+|+|.||.+||+|||++||+|+++|+|+. |+.. ...|.+| .+|. +..+. +.+|++|||+||||+
T Consensus 348 VLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~-~~~~~~~--~~YlNfsnp~i~~~~~p~~cYFNSGVmLINL~ 424 (535)
T PLN02867 348 IVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDN-CCPGRKY--KDYLNFSHPLISSNLDQERCAWLYGMNVFDLK 424 (535)
T ss_pred EEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccc-cccchhh--hhhccccchhhhccCCCCCcceecceeeeeHH
Confidence 56999999999999999999999999999954 5421 1111111 1121 11233 456999999999999
Q ss_pred HHHHHhhhhHHHHHHHhhcCCCCCCccccCCcccC---ccccccccccCchhhhhhc-----cCCcccccccceeccccC
Q psy3471 79 RFRKIAAGDRLRGQYQALSQDPNSLSNLDQDLPNN---MIHQVPIKSLPQEWLWCET-----WCDDRSKSSAKTIDLCNN 150 (227)
Q Consensus 79 kfR~~~~Gd~LR~~Yq~ls~dp~sL~nlDQDLlN~---~q~~vpI~sLp~ewlwcet-----wc~~~~~~~Ak~idlc~n 150 (227)
+||+.++.+++....+.... ..+...|||.+|. ++.+ .+..||.+||++.- +-..+..+.|++|-++++
T Consensus 425 ~WRe~nITek~~~~Le~n~~--~~~~l~dqd~LN~~LlvF~g-~v~~LD~rWNv~gLgy~~~~~~~~~i~~paIIHYnG~ 501 (535)
T PLN02867 425 AWRRTNITEAYHKWLKLSLN--SGLQLWQPGALPPALLAFKG-HVHPIDPSWHVAGLGSRPPEVPREILESAAVLHFSGP 501 (535)
T ss_pred HHHHhcHHHHHHHHHHhchh--cccccccccccchHHHHhcC-cEEECChhhcccCCCcccccchhhhcCCcEEEEECCC
Confidence 99999999999876654211 1244569999997 5644 99999999998532 222233567788877764
No 13
>PLN02742 Probable galacturonosyltransferase
Probab=99.64 E-value=1.1e-16 Score=155.39 Aligned_cols=160 Identities=17% Similarity=0.098 Sum_probs=115.9
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCC-cccccCCcccchhhhhhhcC-CCCCcccceeeeeHHHHHHHhhh
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDS-RTEMDGFRFWNQGYWRNHLQ-GRKYHISALYVVDLKRFRKIAAG 86 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~-~~e~~G~~fW~~GYW~~~L~-~~~Y~~Sgl~vvDL~kfR~~~~G 86 (227)
+.|+|||.||.+||+|||++||+|+++|+|+.|.. -.+..++-.|..-.-++... +.+|+++||+||||++||+.++.
T Consensus 356 vlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nIT 435 (534)
T PLN02742 356 VVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVT 435 (534)
T ss_pred EEEEeCCEEecCChHHHhcCCCCCCEEEEeCchhhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHH
Confidence 57999999999999999999999999999999953 11222222222222233333 45799999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCccccCCcccCc---cccccccccCchhhhhhcc----CCcccccccceeccccCCCcchhHHH
Q psy3471 87 DRLRGQYQALSQDPNSLSNLDQDLPNNM---IHQVPIKSLPQEWLWCETW----CDDRSKSSAKTIDLCNNPLTKEAKLS 159 (227)
Q Consensus 87 d~LR~~Yq~ls~dp~sL~nlDQDLlN~~---q~~vpI~sLp~ewlwcetw----c~~~~~~~Ak~idlc~np~~ke~kl~ 159 (227)
+.+- .++....+ ....|||.+|.+ +.+ .+.+|+..|+-+.-. .+.+..+.|++|-++++ ..|=++
T Consensus 436 e~~~-~w~e~n~~---~~l~d~gaLpp~LLaF~g-~~~~LD~rWNv~gLG~~~~v~~~~i~~aaILHynG~---~KPWl~ 507 (534)
T PLN02742 436 AIYH-YWQEQNVD---RTLWKLGTLPPGLLTFYG-LTEPLDRRWHVLGLGYDTNIDPRLIESAAVLHFNGN---MKPWLK 507 (534)
T ss_pred HHHH-HHHHhccc---cccccccccchHHHHHcC-cceecChhheecccccccccchhhccCCeEEEECCC---CCcccc
Confidence 9544 66665332 344589999975 544 899999999998733 34567889999988875 233222
Q ss_pred HH-HHhchhHHHHHHHHc
Q psy3471 160 AA-MRILYSVYAFIFRAY 176 (227)
Q Consensus 160 ~a-~r~ipew~~yia~~y 176 (227)
.+ .+..|.|..|+....
T Consensus 508 ~~i~~yr~~W~kYl~~s~ 525 (534)
T PLN02742 508 LAIERYKPLWERYVNYSH 525 (534)
T ss_pred cCCcccchHHHHHHccCC
Confidence 22 357889999987643
No 14
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=99.63 E-value=1e-16 Score=144.22 Aligned_cols=132 Identities=23% Similarity=0.237 Sum_probs=88.2
Q ss_pred CCCcCcchhhHhhHHHHhhC--CCCCC-ceecccCCCCcccccCCcccchhh-hhhh---cCCCCCcccceeeeeHHHHH
Q psy3471 9 LGNAPYGYVVRADMKELVDY--DLGNA-PYGYVPFCDSRTEMDGFRFWNQGY-WRNH---LQGRKYHISALYVVDLKRFR 81 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~--DL~g~-p~g~vp~c~~~~e~~G~~fW~~GY-W~~~---L~~~~Y~~Sgl~vvDL~kfR 81 (227)
+.|+|||+||.+||+|||++ |+.|. ++|+|+.... |-.+. |+.. .+...||||||+|+||++||
T Consensus 101 vLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~---------~~~~~~~~~~~~~~~~~~yFNsGVmlinL~~wR 171 (280)
T cd06431 101 VIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSD---------WYLGNLWKNHRPWPALGRGFNTGVILLDLDKLR 171 (280)
T ss_pred EEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchh---------hhhhhhhhccCCCcccccceeeeeeeeeHHHHH
Confidence 56999999999999999998 78665 6666654221 00000 1110 11125999999999999999
Q ss_pred HHhhhhHHHHHHHhhcCCCCCCccccCCcccCcccccc--ccccCchhhhhhccCCcc-----cccccceecccc
Q psy3471 82 KIAAGDRLRGQYQALSQDPNSLSNLDQDLPNNMIHQVP--IKSLPQEWLWCETWCDDR-----SKSSAKTIDLCN 149 (227)
Q Consensus 82 ~~~~Gd~LR~~Yq~ls~dp~sL~nlDQDLlN~~q~~vp--I~sLp~ewlwcetwc~~~-----~~~~Ak~idlc~ 149 (227)
+.+..+++...-.........+...|||++|.++.+-| +..||.+||++-++-... ..+.+++|=+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~v~~~~~~~~~~L~~~wN~~~~~~~~~~~~~~~~~~p~IIHf~g 246 (280)
T cd06431 172 KMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQNPFLVYQLPCAWNVQLSDHTRSEQCYRDVSDLKVIHWNS 246 (280)
T ss_pred hhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHcCCcceeEECCCccccccCccchHhHhhcCcCCCEEEEeCC
Confidence 99999998743222111234566789999999998744 899999999874321100 124566666654
No 15
>PLN02769 Probable galacturonosyltransferase
Probab=99.63 E-value=1.8e-16 Score=156.16 Aligned_cols=156 Identities=20% Similarity=0.239 Sum_probs=107.9
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCcccccCCcccchhhhh-hhcC-CCCCcccceeeeeHHHHHHHhhh
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSRTEMDGFRFWNQGYWR-NHLQ-GRKYHISALYVVDLKRFRKIAAG 86 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~~e~~G~~fW~~GYW~-~~L~-~~~Y~~Sgl~vvDL~kfR~~~~G 86 (227)
+.|+|||+||.+||+|||++||+|+++|+|++|..+-...+ -|.. .... ..+|+||||+||||++||+.++.
T Consensus 455 VLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~rl~~~~------~yl~~~~F~~~~CyFNSGVLLINL~~WRk~nIT 528 (629)
T PLN02769 455 VVVLDDDVVVQRDLSFLWNLDMGGKVNGAVQFCGVRLGQLK------NYLGDTNFDTNSCAWMSGLNVIDLDKWRELDVT 528 (629)
T ss_pred EEEEeCCEEecCcHHHHhcCCCCCCeEEEehhhhhhhhhhh------hhhcccCCCccccccccCeeEeeHHHHHHhCHH
Confidence 56999999999999999999999999999999974321111 0111 1122 34699999999999999999999
Q ss_pred hHHHHHHHhhcC-CCCCCccccCCcccCccccccccccCchhhhhh----ccCCcccccccceeccccCCCcchhHHHHH
Q psy3471 87 DRLRGQYQALSQ-DPNSLSNLDQDLPNNMIHQVPIKSLPQEWLWCE----TWCDDRSKSSAKTIDLCNNPLTKEAKLSAA 161 (227)
Q Consensus 87 d~LR~~Yq~ls~-dp~sL~nlDQDLlN~~q~~vpI~sLp~ewlwce----twc~~~~~~~Ak~idlc~np~~ke~kl~~a 161 (227)
+++....+.+.. +..+...-+|+.+|.++.+ .+..||.+|+.+. ...+.+..+.|++|=++++- .|=.+.+
T Consensus 529 e~~~~~~~~~~~~~~~~~~~~~Lp~lnlvF~g-~v~~LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~~---KPW~e~~ 604 (629)
T PLN02769 529 ETYLKLLQKFSKDGEESLRAAALPASLLTFQD-LIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGNM---KPWLELG 604 (629)
T ss_pred HHHHHHHHHhhhcccccccccCcCHHHHHhcC-eEEECCHHHccccccccccccccccCCcEEEEECCCC---CCccCCC
Confidence 999977666543 2333333344445557766 9999999999753 22345667889999988642 1211111
Q ss_pred -HHhchhHHHHHHH
Q psy3471 162 -MRILYSVYAFIFR 174 (227)
Q Consensus 162 -~r~ipew~~yia~ 174 (227)
.+.-+.|..|+..
T Consensus 605 i~~yr~~W~kYl~~ 618 (629)
T PLN02769 605 IPKYKKYWKRFLNR 618 (629)
T ss_pred CChHHHHHHHHhcc
Confidence 1345667777654
No 16
>PLN02523 galacturonosyltransferase
Probab=99.62 E-value=3.1e-16 Score=152.78 Aligned_cols=155 Identities=14% Similarity=0.098 Sum_probs=107.1
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCC--cc--cccCCcccchhhhhhhcC-CCCCcccceeeeeHHHHHHH
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDS--RT--EMDGFRFWNQGYWRNHLQ-GRKYHISALYVVDLKRFRKI 83 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~--~~--e~~G~~fW~~GYW~~~L~-~~~Y~~Sgl~vvDL~kfR~~ 83 (227)
+.|+|||+||.+||+|||++||+|+++|+|+.|.. ++ +..++... .-+++.. +.+|+++||+||||++||++
T Consensus 380 VLYLD~DVVVq~DLseLw~iDL~gkv~aAVeDc~~~~~r~~~~ln~s~p---~i~~yFNs~aC~wnsGVmlINL~~WRe~ 456 (559)
T PLN02523 380 ILFLDDDVVVQKDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYLNFSHP---LIKEKFNPKACAWAYGMNIFDLDAWRRE 456 (559)
T ss_pred EEEEeCCEEecCCHHHHHhCcCCCceEEEehhhhhHHHHHHHhhcccch---hhhhCcCCCcccccCCcEEEeHHHHHHh
Confidence 56999999999999999999999999999999952 11 11111100 0122233 34566679999999999999
Q ss_pred hhhhHHHHHHHhhcCCCCCCccccCCccc---CccccccccccCchhhhhhcc----CCcccccccceeccccCCCcchh
Q psy3471 84 AAGDRLRGQYQALSQDPNSLSNLDQDLPN---NMIHQVPIKSLPQEWLWCETW----CDDRSKSSAKTIDLCNNPLTKEA 156 (227)
Q Consensus 84 ~~Gd~LR~~Yq~ls~dp~sL~nlDQDLlN---~~q~~vpI~sLp~ewlwcetw----c~~~~~~~Ak~idlc~np~~ke~ 156 (227)
++.+++ ..|+.+..+ ....|||.+| -++.+ .+.+|+++|+.+.-. .+.+..++|++|-++.+.. |
T Consensus 457 nITek~-~~w~~ln~~---~~l~DqdaLpp~LivF~g-ri~~LD~rWNvlglGy~~~i~~~~i~~paIIHYnG~~K---P 528 (559)
T PLN02523 457 KCTEQY-HYWQNLNEN---RTLWKLGTLPPGLITFYS-TTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGNMK---P 528 (559)
T ss_pred chHHHH-HHHHHhccc---cccccccccchHHHHhcC-ceEecCchhhccCCccCCCccccccCCCEEEEECCCCC---c
Confidence 999998 467766333 3446999997 45544 999999999987533 4556677889998887522 1
Q ss_pred HHHHH-HHhchhHHHHHHH
Q psy3471 157 KLSAA-MRILYSVYAFIFR 174 (227)
Q Consensus 157 kl~~a-~r~ipew~~yia~ 174 (227)
=++.+ .+.-+-|..|+..
T Consensus 529 Wle~~i~~yr~~W~kYl~~ 547 (559)
T PLN02523 529 WLDIAMNQFKPLWTKYVDY 547 (559)
T ss_pred cccCCCCcchHHHHHHHcc
Confidence 11221 1234567776544
No 17
>PLN02718 Probable galacturonosyltransferase
Probab=99.59 E-value=6.6e-16 Score=151.69 Aligned_cols=157 Identities=13% Similarity=0.068 Sum_probs=110.2
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCcc----cccCCcccchhhhh-hhcC-CCCCcccceeeeeHHHHHH
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSRT----EMDGFRFWNQGYWR-NHLQ-GRKYHISALYVVDLKRFRK 82 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~~----e~~G~~fW~~GYW~-~~L~-~~~Y~~Sgl~vvDL~kfR~ 82 (227)
+.|+|||.||.+||+|||++||+|+++|+|+.|..+. .+..+--+. ..|- +... +.+|++|||+||||++||+
T Consensus 421 vLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs-~p~i~~~fn~~~CyfNsGVlLIDLk~WRe 499 (603)
T PLN02718 421 IVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFS-DPWVAKKFDPKACTWAFGMNLFDLEEWRR 499 (603)
T ss_pred EEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhhhhhcc-chhhhcccCCCccccccceEEEeHHHHHh
Confidence 5699999999999999999999999999999997421 111100000 0121 1222 4579999999999999999
Q ss_pred HhhhhHHHHHHHhhcCCCCCCccccCCccc---CccccccccccCchhhhhhccC----CcccccccceeccccCCCcch
Q psy3471 83 IAAGDRLRGQYQALSQDPNSLSNLDQDLPN---NMIHQVPIKSLPQEWLWCETWC----DDRSKSSAKTIDLCNNPLTKE 155 (227)
Q Consensus 83 ~~~Gd~LR~~Yq~ls~dp~sL~nlDQDLlN---~~q~~vpI~sLp~ewlwcetwc----~~~~~~~Ak~idlc~np~~ke 155 (227)
.++.+++...++.. ... ...|||.+| -++.+ .+.+||.+|+-+.-.+ +.+..+.|++|-++++ ..
T Consensus 500 enITe~~~~~l~~n---~~~-~l~dqdaLpp~LlvF~g-ri~~LD~rWNv~gLG~~~~i~~~~i~~aaIIHYnG~---~K 571 (603)
T PLN02718 500 QKLTSVYHKYLQLG---VKR-PLWKAGSLPIGWLTFYN-QTVALDKRWHVLGLGHESGVGASDIEQAAVIHYDGV---MK 571 (603)
T ss_pred cChHHHHHHHHHhc---cCc-cccCcccccHHHHHhcC-ceeecChHHhccCccccccccccccCCCEEEEECCC---CC
Confidence 99999988776652 222 345899998 56655 9999999999887554 3456788999988875 22
Q ss_pred hHHHHH-HHhchhHHHHHHH
Q psy3471 156 AKLSAA-MRILYSVYAFIFR 174 (227)
Q Consensus 156 ~kl~~a-~r~ipew~~yia~ 174 (227)
|=++.+ .+.-+=|+.|+..
T Consensus 572 PWle~~i~~yr~~W~k~v~~ 591 (603)
T PLN02718 572 PWLDIGIGKYKRYWNIHVPY 591 (603)
T ss_pred ccccCChhhHHHHHHhhcCC
Confidence 322222 2445567776544
No 18
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=99.59 E-value=7.2e-16 Score=151.85 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=116.2
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCc-ccccCCcccchhhhhhhcC-CCCCcccceeeeeHHHHHHHhhh
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSR-TEMDGFRFWNQGYWRNHLQ-GRKYHISALYVVDLKRFRKIAAG 86 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~-~e~~G~~fW~~GYW~~~L~-~~~Y~~Sgl~vvDL~kfR~~~~G 86 (227)
+.|+|||.||.+||++||++||+|+++|+|+.|... .+...+-+|....-+++.. ..+|+++||+||||++||+.++.
T Consensus 478 VLYLD~DVVV~gDLseLw~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nIT 557 (657)
T PLN02910 478 ILFLDDDIVVQKDLTPLWSIDMQGMVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNIT 557 (657)
T ss_pred EEEEeCCEEecCchHHHHhCCcCCceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHH
Confidence 579999999999999999999999999999999752 1222222333333344454 45799999999999999999998
Q ss_pred hHHHHHHHhhcCCCCCCccccCCcccC---ccccccccccCchhhhhhccCC----cccccccceeccccCCCcchhHHH
Q psy3471 87 DRLRGQYQALSQDPNSLSNLDQDLPNN---MIHQVPIKSLPQEWLWCETWCD----DRSKSSAKTIDLCNNPLTKEAKLS 159 (227)
Q Consensus 87 d~LR~~Yq~ls~dp~sL~nlDQDLlN~---~q~~vpI~sLp~ewlwcetwc~----~~~~~~Ak~idlc~np~~ke~kl~ 159 (227)
+ ....++.+..+ +..-|||.+|- ++.+ .|++|+..|+=+.-.++ .+..+.|.+|-.+++. .|=++
T Consensus 558 e-~ye~w~eln~~---~~L~dqgsLPpgLLvF~g-~i~pLD~rWNv~GLGyd~~v~~~~i~~AAVLHynG~~---KPWl~ 629 (657)
T PLN02910 558 G-IYHYWQDLNED---RTLWKLGSLPPGLITFYN-LTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNY---KPWLD 629 (657)
T ss_pred H-HHHHHHHhccc---ccccccCCCChHHHHHhC-ceeecCchheecCCCCCcccccccccCcEEEEeCCCC---Ccccc
Confidence 8 55567776433 44559999994 5645 89999999998875554 4458889999988762 33333
Q ss_pred HH-HHhchhHHHHHHH
Q psy3471 160 AA-MRILYSVYAFIFR 174 (227)
Q Consensus 160 ~a-~r~ipew~~yia~ 174 (227)
.+ .+.-+.|..|+..
T Consensus 630 l~i~~Yr~~W~kYl~~ 645 (657)
T PLN02910 630 LAIAKYKPYWSRYVQY 645 (657)
T ss_pred cCcccchHHHHHHccC
Confidence 32 2566778887653
No 19
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.59 E-value=6.8e-16 Score=141.48 Aligned_cols=143 Identities=19% Similarity=0.311 Sum_probs=100.1
Q ss_pred CCCcCcchhhHhhHHHHhhC--CCCCC-ceecccCCCCcccccCCcccchhhhhh---hc-CCCCCcccceeeeeHHHHH
Q psy3471 9 LGNAPYGYVVRADMKELVDY--DLGNA-PYGYVPFCDSRTEMDGFRFWNQGYWRN---HL-QGRKYHISALYVVDLKRFR 81 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~--DL~g~-p~g~vp~c~~~~e~~G~~fW~~GYW~~---~L-~~~~Y~~Sgl~vvDL~kfR 81 (227)
+-|+|||+||.+||+|||++ |++|. ..|++|.-.. . ..|++.. +- .+..|+||||+++||++||
T Consensus 100 vLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~----~-----~~~~~~~~~~~~~~~~~gFNSGVmLmNL~~wR 170 (304)
T cd06430 100 LLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEE----P-----NIGWYNRFARHPYYGKTGVNSGVMLMNLTRMR 170 (304)
T ss_pred EEEeccceeecCCHHHHHHHHhhcCCCeEEEEEecccc----c-----chhhhhhhcccCcccccccccceeeeeHHHHH
Confidence 56999999999999999999 99996 5555564221 0 1122211 11 1345799999999999999
Q ss_pred H-----------HhhhhHHHHHHHhhcCCCCCCccccCCcccCcccccc--ccccCchhhh----hh--ccCCccccccc
Q psy3471 82 K-----------IAAGDRLRGQYQALSQDPNSLSNLDQDLPNNMIHQVP--IKSLPQEWLW----CE--TWCDDRSKSSA 142 (227)
Q Consensus 82 ~-----------~~~Gd~LR~~Yq~ls~dp~sL~nlDQDLlN~~q~~vp--I~sLp~ewlw----ce--twc~~~~~~~A 142 (227)
+ .+..+++...++. ...++..-|||++|.+++.-| +..||.+||. |- .=|.....+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~DQDiLN~v~~~~p~~~~~Lp~~wN~~~d~~~y~~~~~~~~~~~~ 247 (304)
T cd06430 171 RKYFKNDMTPVGLRWEEILMPLYKK---YKLKITWGDQDLINIIFHHNPEMLYVFPCHWNYRPDHCMYGSNCKAAEEEGV 247 (304)
T ss_pred hhhcccccchhhhhHHHHHHHHHHh---cccCCCCCCHHHHHHHHcCCCCeEEEcCccccCCccceeecccccccccccc
Confidence 9 6678888887765 446677789999999998855 8999999996 42 33554445667
Q ss_pred ceeccccCCCcchhHHHHHHHhc
Q psy3471 143 KTIDLCNNPLTKEAKLSAAMRIL 165 (227)
Q Consensus 143 k~idlc~np~~ke~kl~~a~r~i 165 (227)
|+| +.|.-++.+|-+-|-|.+
T Consensus 248 ~~~--H~n~~~~~~~~~~~f~~~ 268 (304)
T cd06430 248 FIL--HGNRGVYHSDKQPAFRAV 268 (304)
T ss_pred eEE--EcCCCCCCCccchHHHHH
Confidence 765 555444445544444444
No 20
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.45 E-value=2.9e-14 Score=131.76 Aligned_cols=111 Identities=20% Similarity=0.169 Sum_probs=91.7
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCcccccCCcccchhhhhhhc--CCCCCcccceeeeeHHHHHHHhhh
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSRTEMDGFRFWNQGYWRNHL--QGRKYHISALYVVDLKRFRKIAAG 86 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~~e~~G~~fW~~GYW~~~L--~~~~Y~~Sgl~vvDL~kfR~~~~G 86 (227)
+.|+|||+||.+|+++|+++|++|...|+|..+.+...+.| --+... ....|||||++++|++.||++.+.
T Consensus 101 ~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~~~~~-------~~~~~~~~~~~~yFNaG~llinl~~W~~~~i~ 173 (325)
T COG1442 101 MLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHYMKEG-------ALRLEKGDLEGSYFNAGVLLINLKLWREENIF 173 (325)
T ss_pred EEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhhhhhh-------hhHhhhcccccccCccceeeehHHHHHHhhhH
Confidence 56999999999999999999999999999998876333322 111111 134699999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCccccCCcccCccccccccccCchhhhh
Q psy3471 87 DRLRGQYQALSQDPNSLSNLDQDLPNNMIHQVPIKSLPQEWLWC 130 (227)
Q Consensus 87 d~LR~~Yq~ls~dp~sL~nlDQDLlN~~q~~vpI~sLp~ewlwc 130 (227)
+++...... -++.+.+.|||++|.++++ ++..||.+||-+
T Consensus 174 ~k~i~~~~~---~~~~~~~~DQdiLN~i~~~-~~~~L~~~YN~~ 213 (325)
T COG1442 174 EKLIELLKD---KENDLLYPDQDILNMIFED-RVLELPIRYNAI 213 (325)
T ss_pred HHHHHHHhc---cccccCCccccHHHHHHHh-hhhccCccccee
Confidence 999988644 2278999999999999977 999999999976
No 21
>PLN00176 galactinol synthase
Probab=99.24 E-value=2.3e-12 Score=119.59 Aligned_cols=135 Identities=17% Similarity=0.244 Sum_probs=90.8
Q ss_pred cccccc-CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCcccccC-Ccccchhh---------hhhhcCC--CCCcc
Q psy3471 3 ELVDYD-LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSRTEMDG-FRFWNQGY---------WRNHLQG--RKYHI 69 (227)
Q Consensus 3 ~~~~~~-~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~~e~~G-~~fW~~GY---------W~~~L~~--~~Y~~ 69 (227)
+|++|| +.|+|||+||.++|.|||+++. | .+|+|+.|...+.... .+||- || |...++. ..|||
T Consensus 109 ~l~~ydkvlyLDaD~lv~~nid~Lf~~~~-~-~~aAV~dc~~~~~~~~~p~~~~-~~c~~~~~~~~wp~~~g~~~~~yFN 185 (333)
T PLN00176 109 EFVEYSKMIYLDGDIQVFENIDHLFDLPD-G-YFYAVMDCFCEKTWSHTPQYKI-GYCQQCPDKVTWPAELGPPPPLYFN 185 (333)
T ss_pred cccccceEEEecCCEEeecChHHHhcCCC-c-ceEEEecccccccccccccccc-cccccchhhccchhhccCCCCCeEE
Confidence 456774 6899999999999999999853 3 5788887643211000 12222 21 3233332 35999
Q ss_pred cceeeeeHHHHHHHhhhhHHHHHHHhhcCCCCCCccccCCcccCccccccccccCchhhhhhc--cCCcc--ccccccee
Q psy3471 70 SALYVVDLKRFRKIAAGDRLRGQYQALSQDPNSLSNLDQDLPNNMIHQVPIKSLPQEWLWCET--WCDDR--SKSSAKTI 145 (227)
Q Consensus 70 Sgl~vvDL~kfR~~~~Gd~LR~~Yq~ls~dp~sL~nlDQDLlN~~q~~vpI~sLp~ewlwcet--wc~~~--~~~~Ak~i 145 (227)
||++|++.+.++.... ....+. .+ ...+-|||+||.++.. ..+.||..||..-+ |+.++ ..++.|+|
T Consensus 186 SGVlvinps~~~~~~l----l~~l~~---~~-~~~f~DQD~LN~~F~~-~~~~Lp~~YN~~~~~~~~~~~~~~~~~vkII 256 (333)
T PLN00176 186 AGMFVFEPSLSTYEDL----LETLKI---TP-PTPFAEQDFLNMFFRD-IYKPIPPVYNLVLAMLWRHPENVELDKVKVV 256 (333)
T ss_pred eEEEEEEcCHHHHHHH----HHHHHh---cC-CCCCCCHHHHHHHHcC-cEEECCchhcCchhhhhhChhhcccCCcEEE
Confidence 9999999999886554 333222 22 3466799999999976 88999999997642 33322 13578999
Q ss_pred cccc
Q psy3471 146 DLCN 149 (227)
Q Consensus 146 dlc~ 149 (227)
=+|.
T Consensus 257 HY~~ 260 (333)
T PLN00176 257 HYCA 260 (333)
T ss_pred EeeC
Confidence 9995
No 22
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.19 E-value=7.6e-12 Score=109.02 Aligned_cols=110 Identities=17% Similarity=0.129 Sum_probs=81.7
Q ss_pred CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCcccccCCcccchhhhhhhcCCCCCcccceeeeeHHHHHHHhhhhH
Q psy3471 9 LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSRTEMDGFRFWNQGYWRNHLQGRKYHISALYVVDLKRFRKIAAGDR 88 (227)
Q Consensus 9 ~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~~e~~G~~fW~~GYW~~~L~~~~Y~~Sgl~vvDL~kfR~~~~Gd~ 88 (227)
+.|+|||+||.+||.+||++ +..+|+|+.+.. ..|+|||++++++. ....++
T Consensus 93 vlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~~---------------------~~~fNsGv~l~~~~----~~~~~~ 144 (240)
T cd02537 93 VVFLDADTLVLRNIDELFDL---PGEFAAAPDCGW---------------------PDLFNSGVFVLKPS----EETFND 144 (240)
T ss_pred EEEEeCCeeEccCHHHHhCC---CCceeeecccCc---------------------cccccceEEEEcCC----HHHHHH
Confidence 56999999999999999998 677888875431 25999999999984 345556
Q ss_pred HHHHHHhhcCCCCCCccccCCcccCcccc-ccccccCchhhhhhccCCc-----ccccccceeccccC
Q psy3471 89 LRGQYQALSQDPNSLSNLDQDLPNNMIHQ-VPIKSLPQEWLWCETWCDD-----RSKSSAKTIDLCNN 150 (227)
Q Consensus 89 LR~~Yq~ls~dp~sL~nlDQDLlN~~q~~-vpI~sLp~ewlwcetwc~~-----~~~~~Ak~idlc~n 150 (227)
+....+. . .++...|||++|.+... .|+..||..||+..+.+.. ...+.+++|-++..
T Consensus 145 ~~~~~~~---~-~~~~~~DQdiLN~~~~~~~~~~~l~~~yN~~~~~~~~~~~~~~~~~~~~iiHf~g~ 208 (240)
T cd02537 145 LLDALQD---T-PSFDGGDQGLLNSYFSDRGIWKRLPFTYNALKPLRYLHPEALWFGDEIKVVHFIGG 208 (240)
T ss_pred HHHHHhc---c-CCCCCCCHHHHHHHHcCCCCEeECCcceeeehhhhccCchhhcccCCcEEEEEeCC
Confidence 6544433 2 23666799999999865 2399999999998765542 23456788887763
No 23
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.02 E-value=1e-10 Score=106.30 Aligned_cols=119 Identities=23% Similarity=0.313 Sum_probs=92.4
Q ss_pred ccccc-CCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCcccccCCcccchhhhhhhcCCCCCcccceeeeeHHHHHH
Q psy3471 4 LVDYD-LGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSRTEMDGFRFWNQGYWRNHLQGRKYHISALYVVDLKRFRK 82 (227)
Q Consensus 4 ~~~~~-~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~~e~~G~~fW~~GYW~~~L~~~~Y~~Sgl~vvDL~kfR~ 82 (227)
|.+|| +.|+|||+||.++|.||++++. ..++|+ |. .|| ||||||+||++++++.
T Consensus 89 l~~y~kvlyLDaD~l~~~~ideLf~~~~-~~~~Aa-p~---------------~~~--------~FNSGvmvi~ps~~~~ 143 (278)
T cd06914 89 QTEYDRIIYFDSDSIIRHPMDELFFLPN-YIKFAA-PR---------------AYW--------KFASHLMVIKPSKEAF 143 (278)
T ss_pred ccceeeEEEecCChhhhcChHHHhcCCc-ccceee-ec---------------Ccc--------eecceeEEEeCCHHHH
Confidence 44553 6799999999999999999983 344444 42 133 9999999999999999
Q ss_pred HhhhhHHHHHHHhhcCCCCCCccccCCcccCcccccc-------ccccCch-hh----------------h----hhccC
Q psy3471 83 IAAGDRLRGQYQALSQDPNSLSNLDQDLPNNMIHQVP-------IKSLPQE-WL----------------W----CETWC 134 (227)
Q Consensus 83 ~~~Gd~LR~~Yq~ls~dp~sL~nlDQDLlN~~q~~vp-------I~sLp~e-wl----------------w----cetwc 134 (227)
...-+++...... +. ...|||++|.++.+ . +..||.+ |+ . -|.|=
T Consensus 144 ~~l~~~~~~~~~~---~~---~~~DQdiLN~~~~~-~~~~~~~~~~~Lp~~~y~llt~~~r~~~~~~~l~~~~~~~~~w~ 216 (278)
T cd06914 144 KELMTEILPAYLN---KK---NEYDMDLINEEFYN-SKQLFKPSVLVLPHRQYGLLTGEFREKLHKSFLSNAQHLYEKWD 216 (278)
T ss_pred HHHHHHHHHhccc---CC---CCCChHHHHHHHhC-CccccCcceEEcCccccccCChhhcccCHHHhhccccccccccC
Confidence 8887777755322 22 34599999999977 5 8888886 43 3 67888
Q ss_pred CcccccccceeccccCCCcc
Q psy3471 135 DDRSKSSAKTIDLCNNPLTK 154 (227)
Q Consensus 135 ~~~~~~~Ak~idlc~np~~k 154 (227)
.++-.++||.|-++--|+.|
T Consensus 217 ~~~~~~~~k~vHFSd~Pl~K 236 (278)
T cd06914 217 PDDVFKESKVIHFSDSPLPK 236 (278)
T ss_pred HHHHHhhCeEEEecCCCCCC
Confidence 88888999999999999865
No 24
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=98.66 E-value=2.2e-08 Score=88.76 Aligned_cols=75 Identities=63% Similarity=1.069 Sum_probs=61.5
Q ss_pred ceeccccCCCcchhHHHHHHHhchhHHHHHHHHccceeeEeccccchhhhhhhHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q psy3471 143 KTIDLCNNPLTKEAKLSAAMRILYSVYAFIFRAYKFEYELVQYKWPRWLTQQTEKQRIIWGYKILFLDVLFPLDVKKIIF 222 (227)
Q Consensus 143 k~idlc~np~~ke~kl~~a~r~ipew~~yia~~y~fe~e~v~y~WP~wl~~q~~~~r~~~~~kiLFLDvlfp~~~~~vi~ 222 (227)
.++-+-.+.+++|.+-... + +++.|+++++++...||.|++.+...+|.+|+|+.||+|.+||.+++||||
T Consensus 31 ~~fyil~~~is~e~~~~l~-~--------~~~~~~~~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~~~~lLP~~vdkvLY 101 (248)
T cd06432 31 VKFWFIKNFLSPQFKEFLP-E--------MAKEYGFEYELVTYKWPRWLHKQTEKQRIIWGYKILFLDVLFPLNVDKVIF 101 (248)
T ss_pred EEEEEEeCCCCHHHHHHHH-H--------HHHHhCCceEEEEecChhhhhcccccchhHHHHHHHHHHHhhhhccCEEEE
Confidence 4455555667766653322 1 245789999999999999999999888889999999999999999999999
Q ss_pred ecCC
Q psy3471 223 VDAD 226 (227)
Q Consensus 223 ~d~d 226 (227)
+|+|
T Consensus 102 LD~D 105 (248)
T cd06432 102 VDAD 105 (248)
T ss_pred EcCC
Confidence 9998
No 25
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=97.21 E-value=0.00026 Score=61.54 Aligned_cols=52 Identities=33% Similarity=0.459 Sum_probs=46.7
Q ss_pred HccceeeEeccccchhhhhhhH-HHHHHHHHHHhhhhhcCCCCCCeEEEecCCC
Q psy3471 175 AYKFEYELVQYKWPRWLTQQTE-KQRIIWGYKILFLDVLFPLDVKKIIFVDADQ 227 (227)
Q Consensus 175 ~y~fe~e~v~y~WP~wl~~q~~-~~r~~~~~kiLFLDvlfp~~~~~vi~~d~dq 227 (227)
.++++++++.+++|.+.+.+.. +.+...+|.-||+.-+|| +++||||+|+|.
T Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~i~~llp-~~~kvlYLD~D~ 106 (246)
T cd00505 54 LYNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLHLPNLVP-DYDKILYVDADI 106 (246)
T ss_pred ccCceEEEEeccccCcchhhhhcCccccceeHHHHHHHHhh-ccCeEEEEcCCe
Confidence 4689999999999999887775 677888999999999999 899999999994
No 26
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=96.45 E-value=0.0026 Score=54.91 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=43.4
Q ss_pred ccceeeEeccccchhhhhh-hHHHHHHHHHHHhhhhhcCCCCCCeEEEecCC
Q psy3471 176 YKFEYELVQYKWPRWLTQQ-TEKQRIIWGYKILFLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 176 y~fe~e~v~y~WP~wl~~q-~~~~r~~~~~kiLFLDvlfp~~~~~vi~~d~d 226 (227)
++.+++++.+.+|.+...+ ..+......|--||+..+|| +++||||+|+|
T Consensus 55 ~~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~~ll~-~~~rvlylD~D 105 (248)
T cd04194 55 YNSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIPDLLP-DYDKVLYLDAD 105 (248)
T ss_pred cCCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHHHHhc-ccCEEEEEeCC
Confidence 6899999999999887766 45555677888999999999 89999999998
No 27
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=89.38 E-value=0.23 Score=41.82 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=58.7
Q ss_pred cccCCCcCcchhhHhhHHHHhhCCCCCCceecccCCCCcccccCCcccchhhhhhhcCCCCCcccceeeeeHHHHHHHhh
Q psy3471 6 DYDLGNAPYGYVVRADMKELVDYDLGNAPYGYVPFCDSRTEMDGFRFWNQGYWRNHLQGRKYHISALYVVDLKRFRKIAA 85 (227)
Q Consensus 6 ~~~~~yvDaDqVVr~Dl~eL~~~DL~g~p~g~vp~c~~~~e~~G~~fW~~GYW~~~L~~~~Y~~Sgl~vvDL~kfR~~~~ 85 (227)
.|++.++|+|+|.+.|..+++ +-.++-+.+...+.......+ ...-.++|+|.+ |....
T Consensus 66 G~~vl~~D~Dvv~~~dp~~~~--~~~~~Di~~~~d~~~~~~~~~--------------~~~~~n~G~~~~-----r~t~~ 124 (212)
T PF03407_consen 66 GYDVLFSDADVVWLRDPLPYF--ENPDADILFSSDGWDGTNSDR--------------NGNLVNTGFYYF-----RPTPR 124 (212)
T ss_pred CCceEEecCCEEEecCcHHhh--ccCCCceEEecCCCcccchhh--------------cCCccccceEEE-----ecCHH
Confidence 578899999999999999999 114444444443332221111 112338888876 44444
Q ss_pred hhHHHHHHHhh-cCCCCCCccccCCcccCccc-------cccccccCchhh
Q psy3471 86 GDRLRGQYQAL-SQDPNSLSNLDQDLPNNMIH-------QVPIKSLPQEWL 128 (227)
Q Consensus 86 Gd~LR~~Yq~l-s~dp~sL~nlDQDLlN~~q~-------~vpI~sLp~ewl 128 (227)
+.++...+... ...+.. -||.++|.+.. .+.++.||++-.
T Consensus 125 ~~~~~~~w~~~~~~~~~~---~DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f 172 (212)
T PF03407_consen 125 TIAFLEDWLERMAESPGC---WDQQAFNELLREQAARYGGLRVRFLPPSLF 172 (212)
T ss_pred HHHHHHHHHHHHHhCCCc---chHHHHHHHHHhcccCCcCcEEEEeCHHHe
Confidence 54444443332 222221 29999998764 456888888765
No 28
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=84.32 E-value=0.36 Score=45.87 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=22.8
Q ss_pred cccccc-CCCcCcchhhHhhHHHHhhCC
Q psy3471 3 ELVDYD-LGNAPYGYVVRADMKELVDYD 29 (227)
Q Consensus 3 ~~~~~~-~~yvDaDqVVr~Dl~eL~~~D 29 (227)
|.+.|| ..|+|+|.||+..|-+|+++.
T Consensus 164 eqtEyDRvifLDsDaivlknmDklFd~P 191 (368)
T COG5597 164 EQTEYDRVIFLDSDAIVLKNMDKLFDYP 191 (368)
T ss_pred hhhhhceEEEeccchHHhhhhHHHhcch
Confidence 455666 579999999999999999976
No 29
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=77.15 E-value=1.5 Score=39.95 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=17.8
Q ss_pred HhhhhhcCCCCCCeEEEecCC
Q psy3471 206 ILFLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 206 iLFLDvlfp~~~~~vi~~d~d 226 (227)
=||+--+||.+++||||+|+|
T Consensus 87 RL~ip~llp~~~dkvLYLD~D 107 (280)
T cd06431 87 KLVLTEALPSDLEKVIVLDTD 107 (280)
T ss_pred HHHHHHhchhhcCEEEEEcCC
Confidence 356666789999999999998
No 30
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=71.05 E-value=2.5 Score=39.32 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=29.7
Q ss_pred HHHccceeeEe--ccccchhhhhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEecCC
Q psy3471 173 FRAYKFEYELV--QYKWPRWLTQQTEKQRIIWGYKILFLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 173 a~~y~fe~e~v--~y~WP~wl~~q~~~~r~~~~~kiLFLDvlfp~~~~~vi~~d~d 226 (227)
++.++.++++. +.++...+..... -..-.|==||+--+||.+++||||+|+|
T Consensus 77 ~~~~~~~i~~~~id~~~~~~~~~~~~--~s~atY~Rl~ip~llp~~~dkvLYLD~D 130 (334)
T PRK15171 77 AKQYNTRINIYLINCERLKSLPSTKN--WTYATYFRFIIADYFIDKTDKVLYLDAD 130 (334)
T ss_pred HHhcCCeEEEEEeCHHHHhCCcccCc--CCHHHHHHHHHHHhhhhhcCEEEEeeCC
Confidence 44566666644 4555554432111 1122332345555679899999999998
No 31
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=67.65 E-value=4.4 Score=33.64 Aligned_cols=21 Identities=33% Similarity=0.706 Sum_probs=15.0
Q ss_pred HHHhhhhhcCCCCCCeEEEecCC
Q psy3471 204 YKILFLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 204 ~kiLFLDvlfp~~~~~vi~~d~d 226 (227)
+|+.+.+++ .+++||||+|+|
T Consensus 88 ~rl~i~~ll--~~~drilyLD~D 108 (250)
T PF01501_consen 88 ARLFIPDLL--PDYDRILYLDAD 108 (250)
T ss_dssp GGGGHHHHS--TTSSEEEEE-TT
T ss_pred HHhhhHHHH--hhcCeEEEEcCC
Confidence 356555655 569999999999
No 32
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=66.62 E-value=7.5 Score=36.37 Aligned_cols=19 Identities=53% Similarity=1.046 Sum_probs=16.3
Q ss_pred hhhhhcCCCCCCeEEEecCC
Q psy3471 207 LFLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 207 LFLDvlfp~~~~~vi~~d~d 226 (227)
||+.-+|| +++||||+|+|
T Consensus 88 L~ip~lLp-~~dkvLYLD~D 106 (304)
T cd06430 88 LFLPSLLP-DVDSLLYVDTD 106 (304)
T ss_pred HHHHHHhh-hhceEEEeccc
Confidence 56666679 89999999998
No 33
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=62.53 E-value=4.4 Score=36.56 Aligned_cols=21 Identities=38% Similarity=0.841 Sum_probs=16.4
Q ss_pred HhhhhhcCCCCCCeEEEecCCC
Q psy3471 206 ILFLDVLFPLDVKKIIFVDADQ 227 (227)
Q Consensus 206 iLFLDvlfp~~~~~vi~~d~dq 227 (227)
=|++--+|| +++||||+|+|.
T Consensus 104 Rl~ip~llp-~~~kvlYLD~Dv 124 (257)
T cd06429 104 RFYLPELFP-KLEKVIYLDDDV 124 (257)
T ss_pred HHHHHHHhh-hhCeEEEEeCCE
Confidence 345666678 699999999993
No 34
>PLN02870 Probable galacturonosyltransferase
Probab=39.00 E-value=18 Score=36.56 Aligned_cols=19 Identities=42% Similarity=1.046 Sum_probs=15.9
Q ss_pred hhhhhcCCCCCCeEEEecCC
Q psy3471 207 LFLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 207 LFLDvlfp~~~~~vi~~d~d 226 (227)
||+--+|| +++||||+|+|
T Consensus 334 l~LPelLP-~LdKVLYLD~D 352 (533)
T PLN02870 334 IYLPELFP-NLDKVVFLDDD 352 (533)
T ss_pred HHHHHHhh-hcCeEEEEeCC
Confidence 45666779 79999999998
No 35
>PLN02829 Probable galacturonosyltransferase
Probab=38.46 E-value=20 Score=36.96 Aligned_cols=19 Identities=37% Similarity=0.982 Sum_probs=15.8
Q ss_pred hhhhhcCCCCCCeEEEecCC
Q psy3471 207 LFLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 207 LFLDvlfp~~~~~vi~~d~d 226 (227)
+||-=+|| +++||||+|+|
T Consensus 448 fyLPeLLP-~LdKVLYLD~D 466 (639)
T PLN02829 448 FYLPEIFP-KLNKVLFLDDD 466 (639)
T ss_pred HHHHHHhc-ccCeEEEEeCC
Confidence 45666789 69999999998
No 36
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=38.45 E-value=22 Score=33.57 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=21.2
Q ss_pred HHHHHHHHH---hhhhhcCCCCCCeEEEecCC
Q psy3471 198 QRIIWGYKI---LFLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 198 ~r~~~~~ki---LFLDvlfp~~~~~vi~~d~d 226 (227)
....|.+-+ +|+.=+||+. +|+||+|+|
T Consensus 77 ~~~~~s~~v~~R~fiadlf~~~-dK~lylD~D 107 (325)
T COG1442 77 FTKRFSKMVLVRYFLADLFPQY-DKMLYLDVD 107 (325)
T ss_pred cccchHHHHHHHHHHHHhcccc-CeEEEEecC
Confidence 334444444 4589999998 999999998
No 37
>PLN02659 Probable galacturonosyltransferase
Probab=38.18 E-value=19 Score=36.46 Aligned_cols=19 Identities=42% Similarity=0.931 Sum_probs=16.2
Q ss_pred hhhhhcCCCCCCeEEEecCC
Q psy3471 207 LFLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 207 LFLDvlfp~~~~~vi~~d~d 226 (227)
||+-=+|| +++||||+|+|
T Consensus 335 L~IPeLLP-~LdKVLYLD~D 353 (534)
T PLN02659 335 IHLPELFP-SLNKVVFLDDD 353 (534)
T ss_pred HHHHHHhh-hcCeEEEeeCC
Confidence 45666789 69999999998
No 38
>PLN02769 Probable galacturonosyltransferase
Probab=34.45 E-value=23 Score=36.54 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=16.0
Q ss_pred HHHhhhhhcCCCCCCeEEEecCC
Q psy3471 204 YKILFLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 204 ~kiLFLDvlfp~~~~~vi~~d~d 226 (227)
+++ |+--+|| +++||||+|+|
T Consensus 441 ~Rf-yIPELLP-~LdKVLYLD~D 461 (629)
T PLN02769 441 SHF-LLPEIFK-KLKKVVVLDDD 461 (629)
T ss_pred HHH-HHHHHhh-hcCeEEEEeCC
Confidence 344 4555678 69999999998
No 39
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=33.45 E-value=29 Score=27.94 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=37.2
Q ss_pred CCcCcchhhHhh-HHHHhhCCCCCCceecc--cC-C----CCcccccCCcccchhhhhhhcC---CCC-CcccceeeeeH
Q psy3471 10 GNAPYGYVVRAD-MKELVDYDLGNAPYGYV--PF-C----DSRTEMDGFRFWNQGYWRNHLQ---GRK-YHISALYVVDL 77 (227)
Q Consensus 10 ~yvDaDqVVr~D-l~eL~~~DL~g~p~g~v--p~-c----~~~~e~~G~~fW~~GYW~~~L~---~~~-Y~~Sgl~vvDL 77 (227)
.++|||+++-.| +.++.+. +...-+|+| |. + +.-.++.++.|-...+-....+ +.+ +...+.+++..
T Consensus 3 ~~~DaDt~~~~d~l~~~~~~-~~~~~~~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~r~ 81 (193)
T PF13632_consen 3 LFLDADTRLPPDFLERLVAA-LEDPKVDAVQGPIIFRNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGMLFRR 81 (193)
T ss_pred EEEcCCCCCChHHHHHHHHH-HhCCCceEEEccEEecCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcceeeeH
Confidence 478999999887 4545432 221113333 21 1 1123345544422222222221 233 34445599999
Q ss_pred HHHHHHh
Q psy3471 78 KRFRKIA 84 (227)
Q Consensus 78 ~kfR~~~ 84 (227)
+.+++.+
T Consensus 82 ~~l~~vg 88 (193)
T PF13632_consen 82 EALREVG 88 (193)
T ss_pred HHHHHhC
Confidence 9999775
No 40
>PLN02867 Probable galacturonosyltransferase
Probab=31.04 E-value=29 Score=35.13 Aligned_cols=18 Identities=50% Similarity=1.099 Sum_probs=14.5
Q ss_pred hhhhcCCCCCCeEEEecCC
Q psy3471 208 FLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 208 FLDvlfp~~~~~vi~~d~d 226 (227)
++==+|| +++||||+|+|
T Consensus 337 lIPeLLP-~LdKVLYLD~D 354 (535)
T PLN02867 337 YIPELFP-DLNKIVFLDDD 354 (535)
T ss_pred HHHHHhh-ccCeEEEecCC
Confidence 4455568 69999999998
No 41
>PLN02523 galacturonosyltransferase
Probab=30.71 E-value=31 Score=35.07 Aligned_cols=21 Identities=29% Similarity=0.808 Sum_probs=15.7
Q ss_pred HHHhhhhhcCCCCCCeEEEecCC
Q psy3471 204 YKILFLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 204 ~kiLFLDvlfp~~~~~vi~~d~d 226 (227)
++++ +--+|| +++||||+|+|
T Consensus 366 ~Rf~-IPeLLP-~ldKVLYLD~D 386 (559)
T PLN02523 366 LRFY-LPEMYP-KLHRILFLDDD 386 (559)
T ss_pred HHHH-HHHHhc-ccCeEEEEeCC
Confidence 3444 444578 59999999998
No 42
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=29.36 E-value=97 Score=26.98 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=14.0
Q ss_pred HHhhhhhcCCCCCCeEEEecCCC
Q psy3471 205 KILFLDVLFPLDVKKIIFVDADQ 227 (227)
Q Consensus 205 kiLFLDvlfp~~~~~vi~~d~dq 227 (227)
|+...++ ...+||||+|+|.
T Consensus 81 kl~~~~l---~~~drvlylD~D~ 100 (240)
T cd02537 81 KLRLWNL---TEYDKVVFLDADT 100 (240)
T ss_pred HHHhccc---cccceEEEEeCCe
Confidence 5444443 2599999999993
No 43
>PLN02742 Probable galacturonosyltransferase
Probab=28.98 E-value=34 Score=34.63 Aligned_cols=23 Identities=22% Similarity=0.674 Sum_probs=17.2
Q ss_pred HHHHhhhhhcCCCCCCeEEEecCC
Q psy3471 203 GYKILFLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 203 ~~kiLFLDvlfp~~~~~vi~~d~d 226 (227)
+|==++|--+|| +++||||+|+|
T Consensus 340 ~y~R~~lP~llp-~l~KvlYLD~D 362 (534)
T PLN02742 340 NHLRFYIPEIYP-ALEKVVFLDDD 362 (534)
T ss_pred HHHHHHHHHHhh-ccCeEEEEeCC
Confidence 333345555789 59999999998
No 44
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=27.06 E-value=37 Score=35.20 Aligned_cols=18 Identities=39% Similarity=0.970 Sum_probs=14.3
Q ss_pred hhhhcCCCCCCeEEEecCC
Q psy3471 208 FLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 208 FLDvlfp~~~~~vi~~d~d 226 (227)
||--+|| +++||||+|+|
T Consensus 467 ~LPelLp-~l~KVLYLD~D 484 (657)
T PLN02910 467 YLPEVYP-KLEKILFLDDD 484 (657)
T ss_pred HHHHHhh-hcCeEEEEeCC
Confidence 3444578 69999999998
No 45
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=25.23 E-value=93 Score=23.74 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=21.5
Q ss_pred HHHHHHhchhHHHHHHHHccceeeE
Q psy3471 158 LSAAMRILYSVYAFIFRAYKFEYEL 182 (227)
Q Consensus 158 l~~a~r~ipew~~yia~~y~fe~e~ 182 (227)
.+.|++.+.+|-+.++++||.+++.
T Consensus 11 ~~eAr~~~~~~~~~l~~~~~~~~~W 35 (87)
T PF09650_consen 11 REEARRRAEELAEKLAEEYGVECTW 35 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 4689999999999999999976654
No 46
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=23.63 E-value=83 Score=18.80 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=15.9
Q ss_pred cceeccccCCCcchhHHHHHH
Q psy3471 142 AKTIDLCNNPLTKEAKLSAAM 162 (227)
Q Consensus 142 Ak~idlc~np~~ke~kl~~a~ 162 (227)
=+.+||++|+++.+.-...|+
T Consensus 4 L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 4 LRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred cCEEECCCCCCCHHHHHHHHH
Confidence 468999999999887544443
No 47
>PLN02718 Probable galacturonosyltransferase
Probab=21.98 E-value=58 Score=33.49 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=16.7
Q ss_pred HHHHhhhhhcCCCCCCeEEEecCC
Q psy3471 203 GYKILFLDVLFPLDVKKIIFVDAD 226 (227)
Q Consensus 203 ~~kiLFLDvlfp~~~~~vi~~d~d 226 (227)
-+++++-+ +|| +++||||+|+|
T Consensus 406 y~Rl~ipe-llp-~l~KvLYLD~D 427 (603)
T PLN02718 406 HARFYLPD-IFP-GLNKIVLFDHD 427 (603)
T ss_pred HHHHHHHH-Hhc-ccCEEEEEECC
Confidence 34555555 578 59999999998
Done!