RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3471
         (227 letters)



>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 305

 Score = 29.6 bits (65), Expect = 0.26
 Identities = 23/172 (13%), Positives = 43/172 (25%), Gaps = 26/172 (15%)

Query: 1   MKELVDYDLGNAPYGYVVRADMKELVDYDL-GNAPYGYVPFCDSRTEMDGFRFWNQGYWR 59
           MK+L    + +     + +     L +  L GN                     +     
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 60  NHLQGRKYHISALYVVDLKRFRKIAAGDRLRGQYQALSQDPNSLSNLDQ----DLPNNMI 115
               G   +   L  +                    L + P  L++        L NN I
Sbjct: 209 AVDNGSLANTPHLRELH--------------LNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

Query: 116 HQVPIKSLPQEWLWCETWCDDRSKSSAKTIDLCNNPLTKEAKLSAAMRILYS 167
             +                 +  K+S   + L +NP+       +  R +Y 
Sbjct: 255 SAIGSNDFCPPGY-------NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299


>g1k2x.1 d.153.1.5 (A:,B:) Glycosylasparaginase
          (aspartylglucosaminidase, AGA) {Escherichia coli
          [TaxId: 562]}
          Length = 291

 Score = 28.5 bits (63), Expect = 0.70
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 17 VVRADMKELVDYDLGNAPYGYVPFCDSRTEMD 48
          VV   ++ L +  L NA  G V   D   E+D
Sbjct: 51 VVTEAVRLLEECPLFNAGIGAVFTRDETHELD 82


>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 392

 Score = 26.1 bits (57), Expect = 4.0
 Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 7/64 (10%)

Query: 119 PIKSLPQEW-LWCETWCDDRSKSSA-----KTIDLCNNPLTKEAKLSAAMRILYSVYAFI 172
           P ++LP  +  W                  + ++  N           + R+   V   I
Sbjct: 17  PQENLPDFYNDW-MFIAKHLPDLIESGQLRERVEKLNMLSIDHLTDHKSQRLARLVLGCI 75

Query: 173 FRAY 176
             AY
Sbjct: 76  TMAY 79


>d1aila_ a.16.1.1 (A:) N-terminal, RNA-binding domain of
          nonstructural protein NS1 {Influenza A virus [TaxId:
          11320]}
          Length = 70

 Score = 23.3 bits (50), Expect = 9.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 2  KELVDYDLGNAPYGYVVRADMKEL 25
          K++VD +LG+AP+   +R D K L
Sbjct: 20 KQVVDQELGDAPFLDRLRRDQKSL 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0525    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 926,240
Number of extensions: 41882
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 7
Length of query: 227
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,281,736
Effective search space: 185851720
Effective search space used: 185851720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.9 bits)