BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3475
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 19/142 (13%)
Query: 38 LKIASSQLRDSGTYECQVSTEPKISIGYKLNV------VISKAKIIGNSELYIKSGSDIN 91
L+I SS+ D G YEC + + N+ V + I+ S I G ++N
Sbjct: 166 LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSH-EIMPGGNVN 224
Query: 92 LTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
+TCV + +P P ++ W +GA + E R V+ DS NYTC
Sbjct: 225 ITCVAVGSPMP--YVKWMQGAE----------DLTPEDDMPVGRNVLELTDVKDSANYTC 272
Query: 152 APSSSDGASVVVHVLNGKKFNK 173
SS G V + K K
Sbjct: 273 VAMSSLGVIEAVAQITVKSLPK 294
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 15/147 (10%)
Query: 21 NDLRFTSLHSDGSDEWTLKIASSQL-RDSGTYECQVSTE-PKISIGYKLNVVISKAKI-- 76
N RF ++ D S L+I + RD YEC +I++ KL V+
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG 107
Query: 77 -----IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT 131
+G ++ + C PDP I W++ V+ S G KQ
Sbjct: 108 FPNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSASNG----RIKQL 161
Query: 132 RTSRLVISKAVTSDSGNYTCAPSSSDG 158
R+ L I + +D G Y C ++S G
Sbjct: 162 RSGALQIESSEETDQGKYECVATNSAG 188
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
++W R D T G + + H S L I +L DSG Y+C+ ++ +
Sbjct: 32 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS----LHIKDVKLSDSGRYDCEAAS--R 85
Query: 61 ISIGYKLNVVIS---KAKIIGNSELYIK-SGSDINLTCVVLETPDPPSFIYWYRGANVVN 116
I G++ ++ + K I N +Y G+ IN++C V +PP+ I+W R V+
Sbjct: 86 IG-GHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKS--NPPASIHWRRDKLVL- 141
Query: 117 YSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHVL 166
+ ++ T R L I+ +D G Y C ++ G ++L
Sbjct: 142 -PAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
++W R D T G + + H S L I +L DSG Y+C+ ++ +
Sbjct: 32 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS----LHIKDVKLSDSGRYDCEAAS--R 85
Query: 61 ISIGYKLNVVIS---KAKIIGNSELYIK-SGSDINLTCVVLETPDPPSFIYWYRGANVVN 116
I G++ ++ + K I N +Y G+ IN++C V +PP+ I+W R V+
Sbjct: 86 IG-GHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKS--NPPASIHWRRDKLVL- 141
Query: 117 YSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHVL 166
+ ++ T R L I+ +D G Y C ++ G ++L
Sbjct: 142 -PAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 48/128 (37%), Gaps = 26/128 (20%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIK--------SGS 88
L+I+ Q DSG Y C G + V I + +++ G
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237
Query: 89 DINLTCVVLETPDPPSFIYWYRGANVVN-----YSQRGGISVVTEKQTRTSRLVISKAVT 143
D L C V P PPSF W RG V+ YS GG S L+IS
Sbjct: 238 DAVLECCVSGYP-PPSFT-WLRGEEVIQLRSKKYSLLGG-----------SNLLISNVTD 284
Query: 144 SDSGNYTC 151
DSG YTC
Sbjct: 285 DDSGTYTC 292
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 46/116 (39%), Gaps = 16/116 (13%)
Query: 47 DSGTYECQVS-TEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSF 105
DSGTY C V+ IS +L V++ + S LY DI C V P P
Sbjct: 286 DSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVP--T 343
Query: 106 IYWYRGANVV---NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
+ W + +VV +Y Q G S L I V SD G Y C + G
Sbjct: 344 VNWMKNGDVVIPSDYFQIVG----------GSNLRILGVVKSDEGFYQCVAENEAG 389
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVIS-----KAKIIGNSELYIKSG 87
+D TL + S D G YEC + E +S+ + V+++ I S Y + G
Sbjct: 339 NDNRTLTLLSVTRNDVGPYECGIQNE--LSVDHSDPVILNVLYGPDDPTISPSYTYYRPG 396
Query: 88 SDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSG 147
+++L+C +PP+ W N+ ++Q IS +TEK S L +A S SG
Sbjct: 397 VNLSLSCHAAS--NPPAQYSWLIDGNIQQHTQELFISNITEKN---SGLYTCQANNSASG 451
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 20/124 (16%)
Query: 37 TLKIASSQLRDSGTYEC--QVSTEPKISIGYKLNVVI-SKAKIIGNSELYIKSGSDINLT 93
TL + + D+ +Y+C Q + S LNV+ A I +SG ++NL+
Sbjct: 165 TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLS 224
Query: 94 CVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153
C +PP+ W+ Q T L I ++SG+YTC
Sbjct: 225 CHAAS--NPPAQYSWFVNGTF---------------QQSTQELFIPNITVNNSGSYTCQA 267
Query: 154 SSSD 157
+SD
Sbjct: 268 HNSD 271
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAK----IIGNSELYIKSGS 88
S E L I + D GTYEC+ K Y+ ++I +I ++E I GS
Sbjct: 254 SSEPLLHIQNVDFEDEGTYECEAENI-KGRDTYQGRIIIHAQPDWLDVITDTEADI--GS 310
Query: 89 DINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGN 148
D+ +CV P P + W R + R +S L SK V DSG
Sbjct: 311 DLRWSCVASGKPRPA--VRWLRDGQPLASQNRIEVS--------GGELRFSKLVLEDSGM 360
Query: 149 YTCAPSSSDG 158
Y C + G
Sbjct: 361 YQCVAENKHG 370
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 16/135 (11%)
Query: 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNS 80
N R + + +D D TL I ++ + D+G Y+C V+ E +NV I + + N+
Sbjct: 48 NQQRISVVWND-DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA 106
Query: 81 EL--YIKSGSDINLTCVVLETPDPPSFIYWYRGANVV------------NYSQRGGISVV 126
K G D + C V+ + PP+ I+ ++G +V+ NY Q GI
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSL-PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT 165
Query: 127 TEKQTRTSRLVISKA 141
E R ++++
Sbjct: 166 DEGTYRCEGRILARG 180
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 16/135 (11%)
Query: 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNS 80
N R + + +D D TL I ++ + D+G Y+C V+ E +NV I + + N+
Sbjct: 48 NQQRISVVWND-DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA 106
Query: 81 EL--YIKSGSDINLTCVVLETPDPPSFIYWYRGANVV------------NYSQRGGISVV 126
K G D + C V+ + PP+ I+ ++G +V+ NY Q GI
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSL-PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT 165
Query: 127 TEKQTRTSRLVISKA 141
E R ++++
Sbjct: 166 DEGTYRCEGRILARG 180
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ SG++ L CVVL +PP + W +G + S+R +S + L+++ A+
Sbjct: 26 VVSGAEAELKCVVLG--EPPPVVVWEKGGQQLAASER--LSFPADGAEHG--LLLTAALP 79
Query: 144 SDSGNYTC 151
+D+G Y C
Sbjct: 80 TDAGVYVC 87
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ SG++ L CVVL +PP + W +G + S+R +S + L+++ A+
Sbjct: 25 VVSGAEAELKCVVLG--EPPPVVVWEKGGQQLAASER--LSFPADGAEHG--LLLTAALP 78
Query: 144 SDSGNYTC 151
+D+G Y C
Sbjct: 79 TDAGVYVC 86
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ SG++ L CVVL +PP + W +G + S+R +S + L+++ A+
Sbjct: 26 VVSGAEAELKCVVLG--EPPPVVVWEKGGQQLAASER--LSFPADGAEHG--LLLTAALP 79
Query: 144 SDSGNYTC 151
+D+G Y C
Sbjct: 80 TDAGVYVC 87
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 17/148 (11%)
Query: 21 NDLRFTSLHSDGSDEWTLKIASSQL-RDSGTYECQVSTEP--KISIGYKLNVVISKAKII 77
N RF ++ D S L+I + RD YEC V+ P ++++ KL V+
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTPRDENIYEC-VAQNPHGEVTVHAKLTVLREDQLPP 106
Query: 78 GNSEL-------YIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQ 130
G + ++ + C PDP I W++ V+ S G KQ
Sbjct: 107 GFPNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSTSNG----RIKQ 160
Query: 131 TRTSRLVISKAVTSDSGNYTCAPSSSDG 158
R+ L I + +D G Y C S+S G
Sbjct: 161 LRSGGLQIESSEETDQGKYECVASNSAG 188
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 15/127 (11%)
Query: 35 EWTLKIASSQLRDSGTYECQV-STEPKISIGYKLNVVISKA--KIIGNSELYIKSGSDIN 91
E TL+I S D GTYEC+ +++ + ++ ++ V K+I ++E I GS++
Sbjct: 255 EPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADI--GSNLR 312
Query: 92 LTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
C P P + W R + R + V+ L SK DSG Y C
Sbjct: 313 WGCAAAGKPRP--TVRWLRNGEPLASQNR--VEVL------AGDLRFSKLSLEDSGMYQC 362
Query: 152 APSSSDG 158
+ G
Sbjct: 363 VAENKHG 369
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
G I L C V TP+ I WY+ + R + + + + LVI+K SD
Sbjct: 20 GEPITLQCKVDGTPE--IRIAWYKEHTKL----RSAPAYKMQFKNNVASLVINKVDHSDV 73
Query: 147 GNYTCAPSSSDG--ASVVVHVLNGKKF-----NKLSSLRGRVGITLKFALR 190
G YTC +S G AS V V+ +K KL + +G + F R
Sbjct: 74 GEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECR 124
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 21/142 (14%)
Query: 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV-------ISKAKIIGNSELYIKSG 87
W++ + S D G Y C V E I+ Y+L+VV I +A + N + + G
Sbjct: 73 WSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL--G 130
Query: 88 SDINLTCVVLETPDPPSFIYWYR---------GANVVNYSQRGGISVVTEKQTRTSRLVI 138
S++ C V P P I W + G + + Y Q + V L +
Sbjct: 131 SNVEFMCKVYSDPQP--HIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHL 188
Query: 139 SKAVTSDSGNYTCAPSSSDGAS 160
D+G YTC +S G S
Sbjct: 189 RNVSFEDAGEYTCLAGNSIGLS 210
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR-GGISVVTEKQTRTSRLVISKAV 142
+ + + C TP P + W + R GG V + T +++ V
Sbjct: 28 VPAAKTVKFKCPSSGTPQP--TLRWLKNGKEFKPDHRIGGYKV----RYATWSIIMDSVV 81
Query: 143 TSDSGNYTC 151
SD GNYTC
Sbjct: 82 PSDKGNYTC 90
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 21/142 (14%)
Query: 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV-------ISKAKIIGNSELYIKSG 87
W++ + S D G Y C V E I+ Y+L+VV I +A + N + + G
Sbjct: 74 WSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL--G 131
Query: 88 SDINLTCVVLETPDPPSFIYWYR---------GANVVNYSQRGGISVVTEKQTRTSRLVI 138
S++ C V P P I W + G + + Y Q + V L +
Sbjct: 132 SNVEFMCKVYSDPQP--HIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHL 189
Query: 139 SKAVTSDSGNYTCAPSSSDGAS 160
D+G YTC +S G S
Sbjct: 190 RNVSFEDAGEYTCLAGNSIGLS 211
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR-GGISVVTEKQTRTSRLVISKAV 142
+ + + C TP P + W + R GG V + T +++ V
Sbjct: 29 VPAAKTVKFKCPSSGTPQP--TLRWLKNGKEFKPDHRIGGYKV----RYATWSIIMDSVV 82
Query: 143 TSDSGNYTC 151
SD GNYTC
Sbjct: 83 PSDKGNYTC 91
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 15/144 (10%)
Query: 24 RFTSLHSDGSDEWTLKIASSQL-RDSGTYEC-------QVSTEPKISIGYKLNVVISKAK 75
RF + D L+I ++ RD YEC +++T K+S+ + +
Sbjct: 52 RFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPT 111
Query: 76 I-IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTS 134
I +G ++ G + C PDP I W++ V+ + G KQ R+
Sbjct: 112 IDMGPQLKVVEKGRTATMLCAAGGNPDP--EISWFKDFLPVDPAASNG----RIKQLRSG 165
Query: 135 RLVISKAVTSDSGNYTCAPSSSDG 158
L I + SD G Y C ++S G
Sbjct: 166 ALQIESSEESDQGKYECVATNSAG 189
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 21/142 (14%)
Query: 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV-------ISKAKIIGNSELYIKSG 87
W++ + S D G Y C V E I+ Y+L+VV I +A + N + + G
Sbjct: 73 WSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL--G 130
Query: 88 SDINLTCVVLETPDPPSFIYWYR---------GANVVNYSQRGGISVVTEKQTRTSRLVI 138
S++ C V P P I W + G + + Y Q + V L +
Sbjct: 131 SNVEFMCKVYSDPQP--HIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHL 188
Query: 139 SKAVTSDSGNYTCAPSSSDGAS 160
D+G YTC +S G S
Sbjct: 189 RNVSFEDAGEYTCLAGNSIGLS 210
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR-GGISVVTEKQTRTSRLVISKAV 142
+ + + C TP+P + W + R GG V + T +++ V
Sbjct: 28 VPAAKTVKFKCPSSGTPNP--TLRWLKNGKEFKPDHRIGGYKV----RYATWSIIMDSVV 81
Query: 143 TSDSGNYTC 151
SD GNYTC
Sbjct: 82 PSDKGNYTC 90
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 115 VNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153
+N S GIS+V EK +RL +SK D NY C P
Sbjct: 95 LNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPP 133
>pdb|2IF7|A Chain A, Crystal Structure Of Ntb-A
pdb|2IF7|B Chain B, Crystal Structure Of Ntb-A
pdb|2IF7|C Chain C, Crystal Structure Of Ntb-A
pdb|2IF7|D Chain D, Crystal Structure Of Ntb-A
Length = 193
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 36 WTLKIASSQLRDSGTYECQVSTEPKISI-GYKLNVV--ISKAKIIGNSELYIKSGSDINL 92
++L++++ ++ D+G+Y Q+ST+ + Y L ++ + ++ +S+L+ +++L
Sbjct: 70 YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHL 129
Query: 93 TCVVLETPDPPSF 105
TC V + D SF
Sbjct: 130 TCSVEDADDNVSF 142
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 11/151 (7%)
Query: 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYEC--QVSTEPKISIGYKLNVVISKAKIIG 78
N + T+ + S+ +I + DSG Y C + PK + + V + I G
Sbjct: 42 NGVELTATRKNASN-MEYRINKPRAEDSGEYHCVYHFVSAPKANATIE---VKAAPDITG 97
Query: 79 NSELYIKS-GSDINLTCVVLETPDPPSFIYWYRGANVV--NYSQRGGISVVTEKQTRTSR 135
+ K+ G D + C + P P W + N V S G + K+ T
Sbjct: 98 HKRSENKNEGQDAMMYCKSVGYPHPEWM--WRKKENGVFEEISNSSGRFFIINKENYTEL 155
Query: 136 LVISKAVTSDSGNYTCAPSSSDGASVVVHVL 166
+++ +T D G Y C ++S G++ V VL
Sbjct: 156 NIVNLQITEDPGEYECNATNSIGSASVSTVL 186
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 26/119 (21%)
Query: 67 LNVVISKAKI---IGNSELYIKSGSDINLTCVVLETPDPPSFIYWY--RGANVVNYSQRG 121
L V IS +K+ +G S+ + TC + P+ I WY +G +++ +QR
Sbjct: 3 LQVTISLSKVELSVGESKFF---------TCTAIGEPES---IDWYNPQGEKIIS-TQR- 48
Query: 122 GISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG----ASVVVHVLNGKKFNKLSS 176
VV +K+ SRL I A D+G Y C + + G A+VV+ + F ++ S
Sbjct: 49 ---VVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVS 104
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 15/144 (10%)
Query: 24 RFTSLHSDGSDEWTLKIASSQL-RDSGTYEC-------QVSTEPKISIGYKLNVVISKAK 75
RF + D L+I ++ RD YEC +++T K+S+ + +
Sbjct: 51 RFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPS 110
Query: 76 I-IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTS 134
I +G ++ + C PDP I W++ V+ + G KQ R+
Sbjct: 111 IDMGPQLKVVEKARTATMLCAAGGNPDP--EISWFKDFLPVDPATSNG----RIKQLRSG 164
Query: 135 RLVISKAVTSDSGNYTCAPSSSDG 158
L I + SD G Y C ++S G
Sbjct: 165 ALQIESSEESDQGKYECVATNSAG 188
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 15/147 (10%)
Query: 21 NDLRFTSLHSDGSDEWTLKIASSQL-RDSGTYECQVSTE-PKISIGYKLNVVISKAKI-- 76
N RF ++ D S L+I + RD YEC +I++ KL V+
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG 107
Query: 77 -----IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT 131
+G ++ + C PDP I W++ V+ S G KQ
Sbjct: 108 FPNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSASNGRI----KQL 161
Query: 132 RTSRLVISKAVTSDSGNYTCAPSSSDG 158
R+ L I + +D G Y C ++S G
Sbjct: 162 RSGALQIESSEETDQGKYECVATNSAG 188
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 58/162 (35%), Gaps = 26/162 (16%)
Query: 21 NDLRFTSLHSDG-----SDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV---- 70
N F H G + W+L + S D G Y C V E I+ Y L+VV
Sbjct: 46 NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR 105
Query: 71 ---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR---------GANVVNYS 118
I +A + N+ + G D+ C V P I W + G + + Y
Sbjct: 106 HRPILQAGLPANASTVV--GGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYL 161
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160
+ + V L I D+G YTC +S G S
Sbjct: 162 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 203
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 15/147 (10%)
Query: 21 NDLRFTSLHSDGSDEWTLKIASSQL-RDSGTYECQVSTE-PKISIGYKLNVVISKAKI-- 76
N RF ++ D S L+I + RD YEC +I++ KL V+
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG 107
Query: 77 -----IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT 131
+G ++ + C PDP I W++ V+ S G KQ
Sbjct: 108 FPNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSASNGRI----KQL 161
Query: 132 RTSRLVISKAVTSDSGNYTCAPSSSDG 158
R+ L I + +D G Y C ++S G
Sbjct: 162 RSGALQIESSEETDQGKYECVATNSAG 188
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 58/162 (35%), Gaps = 26/162 (16%)
Query: 21 NDLRFTSLHSDG-----SDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV---- 70
N F H G + W+L + S D G Y C V E I+ Y L+VV
Sbjct: 48 NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWP 107
Query: 71 ---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR---------GANVVNYS 118
I +A + N+ + G D+ C V P I W + G + + Y
Sbjct: 108 HRPILQAGLPANASTVV--GGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYL 163
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160
+ + V L I D+G YTC +S G S
Sbjct: 164 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 58/162 (35%), Gaps = 26/162 (16%)
Query: 21 NDLRFTSLHSDG-----SDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV---- 70
N F H G + W+L + S D G Y C V E I+ Y L+VV
Sbjct: 48 NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR 107
Query: 71 ---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR---------GANVVNYS 118
I +A + N+ + G D+ C V P I W + G + + Y
Sbjct: 108 HRPILQAGLPANASTVV--GGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYL 163
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160
+ + V L I D+G YTC +S G S
Sbjct: 164 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 58/162 (35%), Gaps = 26/162 (16%)
Query: 21 NDLRFTSLHSDG-----SDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV---- 70
N F H G + W+L + S D G Y C V E I+ Y L+VV
Sbjct: 47 NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP 106
Query: 71 ---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR---------GANVVNYS 118
I +A + N+ + G D+ C V P I W + G + + Y
Sbjct: 107 HRPILQAGLPANASTVV--GGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYL 162
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160
+ + V L I D+G YTC +S G S
Sbjct: 163 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 204
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 58/162 (35%), Gaps = 26/162 (16%)
Query: 21 NDLRFTSLHSDG-----SDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV---- 70
N F H G + W+L + S D G Y C V E I+ Y L+VV
Sbjct: 48 NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP 107
Query: 71 ---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR---------GANVVNYS 118
I +A + N+ + G D+ C V P I W + G + + Y
Sbjct: 108 HRPILQAGLPANASTVV--GGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYL 163
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160
+ + V L I D+G YTC +S G S
Sbjct: 164 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 46 RDSGTYECQVSTEPKISIGYKLNV-VISKAKIIGNSE--LYIKSGSDINLTCVVLETPDP 102
D G Y C+V + L + V+S K E + +K G D+ + C V P P
Sbjct: 280 EDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP 339
Query: 103 PSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
+ W A ++ GG + VT+ S LVI D G Y C ++ G
Sbjct: 340 --NVVWSHNAKPLS----GGRATVTD-----SGLVIKGVKNGDKGYYGCRATNEHG 384
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 75 KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTS 134
K+ G +Y G+ +N+TC V P + I W+R ++ S I + S
Sbjct: 21 KLQGPVAVYTWEGNQVNITCEVFAYPS--ATISWFRDGQLLPSSNYSNIKIY--NTPSAS 76
Query: 135 RLVISKAVTSDSGNYTC 151
L ++ +D GNY C
Sbjct: 77 YLEVTPDSENDFGNYNC 93
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 26/119 (21%)
Query: 67 LNVVISKAKI---IGNSELYIKSGSDINLTCVVLETPDPPSFIYWY--RGANVVNYSQRG 121
L V IS +K+ +G S+ + TC + P+ I WY +G +++ +QR
Sbjct: 5 LQVTISLSKVELSVGESKFF---------TCTAIGEPES---IDWYNPQGEKIIS-TQR- 50
Query: 122 GISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG----ASVVVHVLNGKKFNKLSS 176
VV +K+ SRL I A D+G Y C + + G A+VV+ + F ++ S
Sbjct: 51 ---VVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVS 106
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 47 DSGTYECQVSTEPKISIGYK-LNVVISKAKIIGNSELYIKS----GSDINLTCVVLETPD 101
D G Y C+ E + I ++ + V+++ I + + G ++ +C +P+
Sbjct: 164 DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE 223
Query: 102 PPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
P I W+R ++ +++ + + + L + + SD G Y C ++ G
Sbjct: 224 PA--ISWFRNGKLIEENEKYIL------KGSNTELTVRNIINSDGGPYVCRATNKAG 272
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 46 RDSGTYECQVSTEPKISIG---YKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDP 102
D+GTY C VS E S G KL V++ +K N G+ LTC + P
Sbjct: 78 EDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDG-SP 136
Query: 103 PSFIYWYRGANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDSGNYTC 151
PS W++ V+ + + + T LV SD+G Y+C
Sbjct: 137 PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSC 188
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 29/126 (23%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEW----TLKIASSQLRDSGTYECQVS 56
V W+R D IL + T T L D D+W L+I S QL D+G Y+C V
Sbjct: 35 VHWLR--DGQILELADSTQTQ----VPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLV- 87
Query: 57 TEPKISIGYKLNVVISKAKIIGNSEL----------YIKSGSDINLTCVVLETPDPPSFI 106
+G++ +S+ +G L + + + NL+C P+P +
Sbjct: 88 -----FLGHQ--TFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLL 140
Query: 107 YWYRGA 112
W + A
Sbjct: 141 -WLQDA 145
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 57/162 (35%), Gaps = 26/162 (16%)
Query: 21 NDLRFTSLHSDG-----SDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV---- 70
N F H G + W+L S D G Y C V E I+ Y L+VV
Sbjct: 48 NGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP 107
Query: 71 ---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR---------GANVVNYS 118
I +A + N+ + G D+ C V P I W + G + + Y
Sbjct: 108 HRPILQAGLPANASTVV--GGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYL 163
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160
+ + V L I D+G YTC +S G S
Sbjct: 164 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
>pdb|1I85|A Chain A, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1I85|B Chain B, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1NCN|A Chain A, The Receptor-Binding Domain Of Human B7-2
pdb|1NCN|B Chain B, The Receptor-Binding Domain Of Human B7-2
Length = 110
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 19 YTNDLRFTSLHSD-------GSDEWTLKIASSQLRDSGTYEC 53
Y +F S+HS SD WTL++ + Q++D G Y+C
Sbjct: 45 YLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQC 86
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 26/108 (24%)
Query: 67 LNVVISKAKI---IGNSELYIKSGSDINLTCVVLETPDPPSFIYWY--RGANVVNYSQRG 121
L V IS +K+ +G S+ + TC + P+ I WY +G +++ +QR
Sbjct: 1 LQVTISLSKVELSVGESKFF---------TCTAIGEPES---IDWYNPQGEKIIS-TQR- 46
Query: 122 GISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG----ASVVVHV 165
VV +K+ SRL I A D+G Y C + + G A+VV+ +
Sbjct: 47 ---VVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 62 SIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRG 121
S G VV +K + + E+ ++G+ L+C E + + WY+ ++ S +
Sbjct: 2 SSGSSGKVVFAKEQPA-HREVQAEAGASATLSC---EVAQAQTEVTWYKDGKKLSSSSK- 56
Query: 122 GISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
V E T RLV+ +A +++G Y+C
Sbjct: 57 ---VRVEAVGCTRRLVVQQAGQAEAGEYSC 83
>pdb|1UM4|H Chain H, Catalytic Antibody 21h3 With Hapten
pdb|1UM5|H Chain H, Catalytic Antibody 21h3 With Alcohol Substrate
pdb|1UM6|H Chain H, Catalytic Antibody 21h3
Length = 217
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 105 FIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155
+IY Y G N RG ++ ++K + T+ L +S + DS Y CA SS
Sbjct: 49 YIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSEDSAVYYCARSS 99
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 28/158 (17%)
Query: 18 TYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS---TEPKISIGYKLNVVISKA 74
+Y ++ RF S + L IA + D G Y C V+ T K+ +G +++
Sbjct: 144 SYQDNRRFVSQETG-----NLYIAKVEKSDVGNYTCVVTNTVTNHKV-LGPPTPLILRND 197
Query: 75 KIIGNSELYIK----------SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGIS 124
++G E I+ G+ + L C L P P I W R + I+
Sbjct: 198 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP--TILWRR-------ADGKPIA 248
Query: 125 VVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVV 162
+ L I D+G+Y C +S G +V
Sbjct: 249 RKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVA 286
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 25/138 (18%)
Query: 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQ--------VSTEPKISIGYKLNVVISK 73
D R++ + DGS L ++ +D+GTY+C VS E K+ Y N
Sbjct: 54 DFRYSVV--DGS---LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENF---- 104
Query: 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRT 133
K S + ++ G + L C P P S Y S + V+++ T
Sbjct: 105 -KTRTRSTVSVRRGQGMVLLC----GPPPHSGELSYAWIFNEYPSYQDNRRFVSQE---T 156
Query: 134 SRLVISKAVTSDSGNYTC 151
L I+K SD GNYTC
Sbjct: 157 GNLYIAKVEKSDVGNYTC 174
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 28/158 (17%)
Query: 18 TYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS---TEPKISIGYKLNVVISKA 74
+Y ++ RF S + L IA + D G Y C V+ T K+ +G +++
Sbjct: 143 SYQDNRRFVSQETG-----NLYIAKVEKSDVGNYTCVVTNTVTNHKV-LGPPTPLILRND 196
Query: 75 KIIGNSELYIK----------SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGIS 124
++G E I+ G+ + L C L P P I W R + I+
Sbjct: 197 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP--TILWRR-------ADGKPIA 247
Query: 125 VVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVV 162
+ L I D+G+Y C +S G +V
Sbjct: 248 RKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVA 285
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 25/138 (18%)
Query: 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQ--------VSTEPKISIGYKLNVVISK 73
D R++ + DGS L ++ +D+GTY+C VS E K+ Y N
Sbjct: 53 DFRYSVV--DGS---LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENF---- 103
Query: 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRT 133
K S + ++ G + L C P P S Y S + V+++ T
Sbjct: 104 -KTRTRSTVSVRRGQGMVLLC----GPPPHSGELSYAWIFNEYPSYQDNRRFVSQE---T 155
Query: 134 SRLVISKAVTSDSGNYTC 151
L I+K SD GNYTC
Sbjct: 156 GNLYIAKVEKSDVGNYTC 173
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAV 142
++ G D+ L C + P ++W + + SQ+ VV E + LVI A
Sbjct: 19 WVAPGEDVELRCELSRAGTP---VHWLKDRKAIRKSQK--YDVVCEGTM--AMLVIRGAS 71
Query: 143 TSDSGNYTC 151
D+G YTC
Sbjct: 72 LKDAGEYTC 80
>pdb|1YPZ|E Chain E, Immune Receptor
pdb|1YPZ|G Chain G, Immune Receptor
Length = 207
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
TL I +QL DSGTY C T IS GY+L G +L G+ + +
Sbjct: 72 TLHIRDAQLEDSGTYFCAADTW-HISEGYEL----------GTDKLVFGQGTQVTVE-PK 119
Query: 97 LETPDPPSFIYWYRGANVV 115
+ P PS G NV
Sbjct: 120 SQPPAKPSVFIMKNGTNVA 138
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Query: 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS---TEPKISIGYKLNVVISKAK-IIG 78
L T + +D +++ ++ L+D G Y C T+ + + +L V+ A I G
Sbjct: 612 LNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITG 671
Query: 79 NSELYIKS-GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLV 137
N E S G I ++C + +PP I W++ + + GI + + L
Sbjct: 672 NLENQTTSIGESIEVSCTA--SGNPPPQIMWFKDNETL--VEDSGIVL----KDGNRNLT 723
Query: 138 ISKAVTSDSGNYTCAPSSSDGASVV 162
I + D G YTC S G + V
Sbjct: 724 IRRVRKEDEGLYTCQACSVLGCAKV 748
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 32.3 bits (72), Expect = 0.18, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 13/137 (9%)
Query: 32 GSDEWTLKIASSQLRDSGTYECQVSTE-------PKISIGYKLNVVISKAKIIGNSELYI 84
G E L+I S + D G Y+C V + ++ +G + + + + E +
Sbjct: 385 GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAF---QEETM 441
Query: 85 KSGSDINLTCVVLETPDPPSFIYW-YRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ G + L CV P P I W G + N + VT S L I+
Sbjct: 442 EPGPSVFLKCVAGGNPTPE--ISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHA 499
Query: 144 SDSGNYTCAPSSSDGAS 160
+D G Y C S G +
Sbjct: 500 NDGGLYKCIAKSKVGVA 516
Score = 32.0 bits (71), Expect = 0.22, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 14/127 (11%)
Query: 42 SSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSD-INLTCVVLETP 100
+ + R S T V TEP I + V+S AK ++ SGS + L C P
Sbjct: 224 TGETRLSATKGRLVITEP---ISSAVPKVVSLAKF----DMKTYSGSSTMALLCPAQGYP 276
Query: 101 DPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTS-RLVISKAVTSDSGNYTCAPSSSDGA 159
P WY+ + + R V+ ++ + S L+I AV DSG Y C ++S G
Sbjct: 277 VP--VFRWYK---FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 331
Query: 160 SVVVHVL 166
V VL
Sbjct: 332 ESVETVL 338
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 47 DSGTYECQVSTEPKISIGYK-LNVVISKAKIIGNSELYIKS----GSDINLTCVVLETPD 101
D G Y C+ E + I ++ + V+++ I + + G ++ +C +P+
Sbjct: 68 DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE 127
Query: 102 PPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
P I W+R ++ +++ + + + L + + SD G Y C ++ G
Sbjct: 128 PA--ISWFRNGKLIEENEKYIL------KGSNTELTVRNIINSDGGPYVCRATNKAG 176
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 72 SKAKIIGN--SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK 129
++A+++G + I+ G +NLTC V DPP + W + + + + +
Sbjct: 115 NRARVLGGLPDVVTIQEGKALNLTCNVW--GDPPPEVSWLKNEKALAQTDHCNLKF---E 169
Query: 130 QTRTSRLVISKAVTSDSGNY 149
RT+ I+ T+DSG Y
Sbjct: 170 AGRTAYFTINGVSTADSGKY 189
>pdb|3HG1|E Chain E, Germline-Governed Recognition Of A Cancer Epitope By An
Immunodominant Human T Cell Receptor
Length = 244
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYR-----GANVVNYSQR-GGISVVTEKQTRTSR----- 135
GS ++L C V T +P +YWYR G ++ YS G IS + SR
Sbjct: 16 GSPLSLECTVEGTSNP--NLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQ 73
Query: 136 --LVISKAVTSDSGNYTCAPSSSDGASVVVHVLNGKKFNKLSSLR 178
L K + SDSG Y CA S + + + G + L L+
Sbjct: 74 FILSSKKLLLSDSGFYLCAWSETGLGTGELFFGEGSRLTVLEDLK 118
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 72 SKAKIIGN--SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK 129
++A+++G + I+ G +NLTC V DPP + W + + + +
Sbjct: 220 NRARVLGGLPDVVTIQEGKALNLTCNVW--GDPPPEVSWLKNEKALASDDHCNLKF---E 274
Query: 130 QTRTSRLVISKAVTSDSGNY 149
RT+ I+ T+DSG Y
Sbjct: 275 AGRTAYFTINGVSTADSGKY 294
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
++ G D+ ++ V P P + W R V QR E + RL I A
Sbjct: 17 VREGQDVIMSIRVQGEPKP--VVSWLRNRQPVRPDQR---RFAEEAEGGLCRLRILAAER 71
Query: 144 SDSGNYTCAPSSSDGA 159
D+G YTC + GA
Sbjct: 72 GDAGFYTCKAVNEYGA 87
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
Length = 121
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYR---GANVVNYSQRGGISVVT-EKQTRTSRLVISK 140
++G + + CV+ ++ S YWYR G+ +GG V T +++ L I+
Sbjct: 13 ETGESLTINCVLRDSNCALSSTYWYRKKSGSTNEESISKGGRYVETVNSGSKSFSLRIND 72
Query: 141 AVTSDSGNYTCAPSSSDGA 159
DSG Y C P S G+
Sbjct: 73 LTVEDSGTYRCKPESRYGS 91
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 23/144 (15%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV-------ISKAKIIGNSELYIKS 86
+W+L + S D G Y C V + I Y L+V+ I +A + N +
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL-- 236
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRG--GISVVTEKQTRTSR--------L 136
GSD+ C V P I W + V N S+ G G VT +T + L
Sbjct: 237 GSDVEFHCKVYSDAQP--HIQWLKHVEV-NGSKVGPDGTPYVTVLKTAGANTTDKELEVL 293
Query: 137 VISKAVTSDSGNYTCAPSSSDGAS 160
+ D+G YTC +S G S
Sbjct: 294 SLHNVTFEDAGEYTCLAGNSIGFS 317
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR-GGISVVTEKQTRTSRLVISK 140
L + + + + C P P I W + R GGI + ++ + LV+
Sbjct: 133 LAVPAANTVRFRCPAAGNPTP--SISWLKNGREFRGEHRIGGIKLRHQQWS----LVMES 186
Query: 141 AVTSDSGNYTC 151
V SD GNYTC
Sbjct: 187 VVPSDRGNYTC 197
>pdb|4H1L|H Chain H, Tcr Interaction With Peptide Mimics Of Nickel Offers
Structural Insights In Nickel Contact Allergy
pdb|4H1L|J Chain J, Tcr Interaction With Peptide Mimics Of Nickel Offers
Structural Insights In Nickel Contact Allergy
Length = 111
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 17/91 (18%)
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRG-----------ANVVNYSQRGGISV---VT 127
L+ K G ++ L+C D +YWYR + +VN Q+G I+ V+
Sbjct: 9 LFRKEGQNVTLSCEQNLNHDA---MYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVS 65
Query: 128 EKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
++ + L ++ A + + Y CA S DG
Sbjct: 66 REKKESFPLTVTSAQKNPTAFYLCASSLRDG 96
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
G +I L C + E + P W + V S R + VV ++ R +LVI+ A+T D
Sbjct: 22 GKEICLKCEISE--NIPG--KWTKNGLPVQESDR--LKVV--QKGRIHKLVIANALTEDE 73
Query: 147 GNYTCAPSSSD-GASVVVHVLNG 168
G+Y AP + + VHV++G
Sbjct: 74 GDYVFAPDAYNVTLPAKVHVISG 96
>pdb|1U3H|A Chain A, Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc
Class Ii I-Au Molecule At 2.4 A
pdb|1U3H|E Chain E, Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc
Class Ii I-Au Molecule At 2.4 A
Length = 110
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 12 LTVGILTYTN---DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS----TEPKISIG 64
L + IL+ ++ D RFT + + +L IA SQ DS TY C S T + G
Sbjct: 44 LLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASANSGTYQRFGTG 103
Query: 65 YKLNVV 70
KL VV
Sbjct: 104 TKLQVV 109
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 31/170 (18%)
Query: 1 VSW-IRKRDLHILTVGILTYTNDLRFTSLHSD------------GSDEWTLKIASSQLRD 47
+ W I D I+ I+ Y+ D + + + D S + ++ + + QL D
Sbjct: 36 IEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSD 95
Query: 48 SGTYECQVSTEPKISIGYKLNVVISKAK-----IIGNSELYIKSGSDINLTCVVLETPDP 102
GTY+C+V P ++ L V+ K + G+ E+ G+D L C E P
Sbjct: 96 IGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEI----GNDFKLKCEPKEGSLP 151
Query: 103 PSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD-SGNYTC 151
F W + ++ SQ + E TS ++ K +S+ SG Y+C
Sbjct: 152 LQF-EWQKLSD----SQTMPTPWLAE---MTSPVISVKNASSEYSGTYSC 193
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 31/170 (18%)
Query: 1 VSW-IRKRDLHILTVGILTYTNDLRFTSLHSD------------GSDEWTLKIASSQLRD 47
+ W I D I+ I+ Y+ D + + + D S + ++ + + QL D
Sbjct: 38 IEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSD 97
Query: 48 SGTYECQVSTEPKISIGYKLNVVISKAK-----IIGNSELYIKSGSDINLTCVVLETPDP 102
GTY+C+V P ++ L V+ K + G+ E+ G+D L C E P
Sbjct: 98 IGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEI----GNDFKLKCEPKEGSLP 153
Query: 103 PSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD-SGNYTC 151
F W + ++ SQ + E TS ++ K +S+ SG Y+C
Sbjct: 154 LQF-EWQKLSD----SQTMPTPWLAE---MTSPVISVKNASSEYSGTYSC 195
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 42 SSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPD 101
+ + R S T V TEP S+ K+N K + I ++ S +L C+ P
Sbjct: 191 TGETRLSATKGRLVITEPVGSVRPKVNPQ-DKHQFID-----VELASSYSLLCMAQSYPT 244
Query: 102 PPSFIYWYRGANVVNYSQRGGISVVTEKQTRTS-RLVISKAVTSDSGNYTCAPSSSDGAS 160
P SF WY+ + + R V+ ++ + S L+I AV DSG Y C ++S G
Sbjct: 245 P-SF-RWYK---FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE 299
Query: 161 VVVHVL 166
V VL
Sbjct: 300 SVETVL 305
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 38 LKIASSQLRDSGTYECQVST--EPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCV 95
L + S + D+G Y CQV E +IS L V + +L + + L+C
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCE 121
Query: 96 VLETPDPPSFIYWYRG 111
+ P+P + I W+RG
Sbjct: 122 AVGPPEPVT-IVWWRG 136
>pdb|2I24|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain
pdb|2I25|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain In Complex With Lysozyme
pdb|2I25|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain In Complex With Lysozyme
Length = 121
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYR---GANVVNYSQRGGISVVT-EKQTRTSRLVISK 140
++G + + CVV ++ S YWYR G+ GG V T + +++ L I+
Sbjct: 13 ETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKSFSLRIND 72
Query: 141 AVTSDSGNYTCAPSSSDGA-SVVVHVLN 167
DSG Y C P S G+ V LN
Sbjct: 73 LTVKDSGTYRCKPESRYGSYDAVCAALN 100
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQ 54
R+ + GS ++L+I ++DSGTY C+
Sbjct: 54 RYVETVNRGSKSFSLRINDLTVKDSGTYRCK 84
>pdb|3FMG|L Chain L, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In
Co A Neutralizing Fab
Length = 211
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
++LKI+S Q D GTY CQ P ++ G + + +A
Sbjct: 70 HFSLKISSVQPEDFGTYYCQHHNGPPLTFGAGTKLELKRA 109
>pdb|3O4O|B Chain B, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 27/146 (18%)
Query: 45 LRDSGTYECQVSTEPKIS-IGYKLNVV-----ISKAKIIGNSELYIKSGSDINLTCVVLE 98
L D+G Y C + S + + L VV + + +LYI+ G +TC ++
Sbjct: 89 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQ-RITCPNVD 147
Query: 99 TPDPPSF---IYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155
P S I WY G Y + +V+ E L A+ S++GNYTC
Sbjct: 148 GYFPSSVKPTITWYMGC----YKIQNFNNVIPEGMN----LSFLIALISNNGNYTC---- 195
Query: 156 SDGASVVVHVLNGKKFNKLSSLRGRV 181
VV + NG+ F+ +L +V
Sbjct: 196 -----VVTYPENGRTFHLTRTLTVKV 216
>pdb|4DEP|C Chain C, Structure Of The Il-1b Signaling Complex
pdb|4DEP|F Chain F, Structure Of The Il-1b Signaling Complex
Length = 349
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 27/146 (18%)
Query: 45 LRDSGTYECQVSTEPKIS-IGYKLNVV-----ISKAKIIGNSELYIKSGSDINLTCVVLE 98
L D+G Y C + S + + L VV + + +LYI+ G +TC ++
Sbjct: 88 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQ-RITCPNVD 146
Query: 99 TPDPPSF---IYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155
P S I WY G Y + +V+ E L A+ S++GNYTC
Sbjct: 147 GYFPSSVKPTITWYMGC----YKIQNFNNVIPEGMN----LSFLIALISNNGNYTC---- 194
Query: 156 SDGASVVVHVLNGKKFNKLSSLRGRV 181
VV + NG+ F+ +L +V
Sbjct: 195 -----VVTYPENGRTFHLTRTLTVKV 215
>pdb|3Q5T|A Chain A, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
Length = 241
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQ----VSTEPKISIGYKL-------NVVIS 72
RF+++ G++ TLKI S++ D+ TY C V TE G +L NV
Sbjct: 65 RFSAVRPKGTNS-TLKIQSAKQGDTATYLCASSSGVGTEVFFGKGTRLTVVEDLRNVTPP 123
Query: 73 KAKIIGNSELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANV 114
K + S+ I + L C+ PD +W G V
Sbjct: 124 KVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEV 166
>pdb|2FBO|J Chain J, Crystal Structure Of The Two Tandem V-Type Regions Of
Vcbp3 (V-Region-Containing Chitin Binding Protein) To
1.85 A
Length = 250
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 31/150 (20%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSE-----------LYIK 85
TL++ +D G Y CQV+ + I + L+ K+ G++ + +
Sbjct: 91 TLRLTHVHPQDGGRYWCQVA-QWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVD 149
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGAN------------VVNYSQRGGISVVTEKQTRT 133
G+DI +TC + + + + WY G + N +Q G +E R
Sbjct: 150 EGNDITMTCPCTDCAN--ANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRA 207
Query: 134 S-----RLVISKAVTSDSGNYTCAPSSSDG 158
S LVI A +D+G C ++ G
Sbjct: 208 SFSGARNLVIRAAKITDAGRVWCELATGQG 237
>pdb|3FFC|D Chain D, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
pdb|3FFC|I Chain I, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
Length = 202
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYR----GANVV-----NYSQ----RGGISVVTE 128
++++ + L C +T DP ++WY+ G + +Y Q G S+ +
Sbjct: 9 MFVQEKEAVTLDCT-YDTSDPSYGLFWYKQPSSGEMIFVIYQGSYDQGNATEGRYSLNFQ 67
Query: 129 KQTRTSRLVISKAVTSDSGNYTCA 152
K +++ LVIS + DS Y CA
Sbjct: 68 KARKSANLVISASQLGDSAMYFCA 91
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR-GGISVVTEKQTRTSRLVISK 140
L + + + + C P P I W + R GGI + ++ + LV+
Sbjct: 25 LAVPAANTVRFRCPAAGNPTP--SISWLKNGREFRGEHRIGGIKLRHQQWS----LVMES 78
Query: 141 AVTSDSGNYTC 151
V SD GNYTC
Sbjct: 79 VVPSDRGNYTC 89
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 22/134 (16%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV-------ISKAKIIGNSELYIKS 86
+W+L + S D G Y C V + I Y L+V+ I +A + N +
Sbjct: 71 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL-- 128
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRG--GISVVT-------EKQTRTSRLV 137
GSD+ C V P I W + VN S+ G G VT E RL
Sbjct: 129 GSDVEFHCKVYSDAQP--HIQWLKHVE-VNGSKVGPDGTPYVTVLKSWISESVEADVRLR 185
Query: 138 ISKAVTSDSGNYTC 151
++ D G Y C
Sbjct: 186 LANVSERDGGEYLC 199
>pdb|2YWZ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59
R+ GS ++L+I+ ++ DSGTY+CQ P
Sbjct: 54 RYDETVDKGSKSFSLRISDLRVEDSGTYKCQADYSP 89
>pdb|3MOQ|A Chain A, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|B Chain B, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|C Chain C, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|D Chain D, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
Length = 126
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
R+ + GS ++L+I+ ++ DSGTY+CQ
Sbjct: 54 RYVETVNKGSKSFSLRISDLRVEDSGTYKCQA 85
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 20/148 (13%)
Query: 24 RFTSLHSDGSDEWTLKIASSQL-RDSGTYECQVSTE-PKISIGYKLNVVISKAKI----- 76
RF + D L+I + RD YEC S +IS+ +L V+ + +I
Sbjct: 51 RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRL-TVLREDQIPRGFP 109
Query: 77 ---IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRT 133
+G ++ + C PDP I W++ V+ S G KQ R+
Sbjct: 110 TIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDTSNNNGRI----KQLRS 163
Query: 134 SR---LVISKAVTSDSGNYTCAPSSSDG 158
L I ++ SD G Y C ++S G
Sbjct: 164 ESIGALQIEQSEESDQGKYECVATNSAG 191
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 18/144 (12%)
Query: 26 TSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIK 85
T D D+W G Y C EP + +L+ + K + +SE +I
Sbjct: 51 TEFKVDSDDQW------------GEYSCVFLPEPMGTANIQLHGP-PRVKAVKSSE-HIN 96
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGIS---VVTEKQTRTSRLVISKAV 142
G L C P P + WY+ + + + G V+ Q R+ + + +
Sbjct: 97 EGETAMLVCKSESVP-PVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNM 155
Query: 143 TSDSGNYTCAPSSSDGASVVVHVL 166
+D G Y C +SS G+ + L
Sbjct: 156 EADPGQYRCNGTSSKGSDQAIITL 179
>pdb|1QRN|D Chain D, Crystal Structure Of Human A6 Tcr Complexed With Hla-A2
Bound To Altered Htlv-1 Tax Peptide P6a
Length = 200
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 3 WIRKRDLHILTVGILTYTN----DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
W R+ + + Y+N D RFT+ + S +L I SQ DS TY C V+T+
Sbjct: 34 WYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD 93
Query: 59 P--KISIGYKLNVVIS 72
K+ G VV++
Sbjct: 94 SWGKLQFGAGTQVVVT 109
>pdb|1AO7|D Chain D, Complex Between Human T-Cell Receptor, Viral Peptide
(Tax), And Hla-A 0201
Length = 204
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 3 WIRKRDLHILTVGILTYTN----DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
W R+ + + Y+N D RFT+ + S +L I SQ DS TY C V+T+
Sbjct: 34 WYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD 93
Query: 59 P--KISIGYKLNVVIS 72
K+ G VV++
Sbjct: 94 SWGKLQFGAGTQVVVT 109
>pdb|1B88|A Chain A, V-Alpha 2.6 Mouse T Cell Receptor (Tcr) Domain
pdb|1B88|B Chain B, V-Alpha 2.6 Mouse T Cell Receptor (Tcr) Domain
Length = 114
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 12 LTVGILTYTN---DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57
L + IL+ +N D RFT + + +L IA SQ DS TY C S
Sbjct: 46 LLISILSVSNKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASA 94
>pdb|3HI5|L Chain L, Crystal Structure Of Fab Fragment Of Al-57
pdb|3HI6|L Chain L, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
pdb|3HI6|Y Chain Y, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
Length = 212
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 35 EWTLKIASSQLRDSGTYECQVS-TEPKISIGYKLNVVISKAK----IIGNSELYIKSGSD 89
++TL I+S QL D TY CQ S + P G K+ + + A I S+ +KSG+
Sbjct: 71 DFTLTISSLQLEDFATYYCQQSYSTPSFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT- 129
Query: 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSGN 148
++ C++ + + W V N Q G VTE+ ++ S +S +T +
Sbjct: 130 ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKAD 185
Query: 149 Y 149
Y
Sbjct: 186 Y 186
>pdb|1QSE|D Chain D, Structure Of Human A6-Tcr Bound To Hla-A2 Complexed With
Altered Htlv-1 Tax Peptide V7r
pdb|1QSF|D Chain D, Structure Of A6-Tcr Bound To Hla-A2 Complexed With Altered
Htlv-1 Tax Peptide Y8a
pdb|2GJ6|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-a2
With The Modified Htlv-1 Tax (y5k-4-[3-indolyl]-butyric
Acid) Peptide
pdb|3D39|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Htlv-1 Tax (Y5(4-Fluorophenylalanine))
Peptide
pdb|3D3V|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Htlv-1 Tax
(Y5(3,4-Difluorophenylalanine)) Peptide
pdb|3H9S|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Bound Tel1p Peptide
pdb|3PWP|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Bound Hud Peptide
pdb|3QFJ|D Chain D, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Tax (Y5f) Peptide
Length = 200
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 3 WIRKRDLHILTVGILTYTN----DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
W R+ + + Y+N D RFT+ + S +L I SQ DS TY C V+T+
Sbjct: 34 WYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD 93
Query: 59 P--KISIGYKLNVVIS 72
K+ G VV++
Sbjct: 94 SWGKLQFGAGTQVVVT 109
>pdb|2Z8V|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8V|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
R+ + GS ++L+I+ ++ DSGTY+CQ
Sbjct: 54 RYVETVNKGSKSFSLRISDLRVEDSGTYKCQA 85
>pdb|3QH3|A Chain A, The Crystal Structure Of Tcr A6
pdb|3QH3|C Chain C, The Crystal Structure Of Tcr A6
Length = 194
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVIS 72
D RFT+ + S +L I SQ DS TY C V+T+ K+ G VV++
Sbjct: 57 DGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTDSWGKLQFGAGTQVVVT 109
>pdb|2Z8W|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8W|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
R+ + GS ++L+I+ ++ DSGTY+CQ
Sbjct: 54 RYVETVNKGSKSFSLRISDLRVEDSGTYKCQA 85
>pdb|1TET|H Chain H, Crystal Structure Of An Anticholera Toxin Peptide Complex
At 2.3 Angstroms
Length = 210
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 15 GILTYTNDL--RFT-SLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
G+ TY +D RF SL + S + L+I + + D+ TY C + G V +
Sbjct: 56 GVPTYADDFKGRFAFSLETSASTAY-LQINNLKNEDTATYFCARRSWYFDVWGTGTTVTV 114
Query: 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA 112
S AK S + GS + L C+V P + W G+
Sbjct: 115 SSAKTTPPSVYPLAPGSMVTLGCLVKGYFPEPVTVTWNSGS 155
>pdb|1F6A|A Chain A, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
Length = 176
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
+L I +++ DSG Y+CQ + Y V S ++ S + G + L C
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVAESEPVYL--EVFSDWLLLQASAEVVMEGQPLFLRCHG 109
Query: 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
D IY+ G + + + IS I+ A DSG Y C
Sbjct: 110 WRNWDVYKVIYYKDGEALKYWYENHAIS-------------ITNAAAEDSGTYYC 151
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 13/126 (10%)
Query: 42 SSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPD 101
+ + R S T V TEP S + ++ K L + I+L C P
Sbjct: 189 TGETRLSATKGRLVITEPISSSAPRTPALVQKP-------LELMVAHTISLLCPAQGFPA 241
Query: 102 PPSFIYWYRGANVVNYSQRGGISVVTEKQTRTS-RLVISKAVTSDSGNYTCAPSSSDGAS 160
P SF WY+ + + R V+ ++ + S L+I AV DSG Y C ++S G
Sbjct: 242 P-SF-RWYK---FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE 296
Query: 161 VVVHVL 166
V VL
Sbjct: 297 SVETVL 302
>pdb|1VES|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|1VES|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
R+ + GS ++L+I+ ++ DSGTY+CQ
Sbjct: 54 RYVETVNKGSKSFSLRISDLRVEDSGTYKCQA 85
>pdb|2Y7Q|A Chain A, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 188
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
+L I +++ DSG Y+CQ + Y V S ++ S + G + L C
Sbjct: 55 SLNIVNAKFEDSGEYKCQHQQVAESEPVYL--EVFSDWLLLQASAEVVMEGQPLFLRCHG 112
Query: 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
D IY+ G + + + IS I+ A DSG Y C
Sbjct: 113 WRNWDVYKVIYYKDGEALKYWYENHAIS-------------ITNAAAEDSGTYYC 154
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 13/126 (10%)
Query: 42 SSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPD 101
+ + R S T V TEP S + ++ K L + I+L C P
Sbjct: 195 TGETRLSATKGRLVITEPISSSAPRTPALVQKP-------LELMVAHTISLLCPAQGFP- 246
Query: 102 PPSFIYWYRGANVVNYSQRGGISVVTEKQTRTS-RLVISKAVTSDSGNYTCAPSSSDGAS 160
PSF WY+ + + R V+ ++ + S L+I AV DSG Y C ++S G
Sbjct: 247 APSF-RWYK---FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE 302
Query: 161 VVVHVL 166
V VL
Sbjct: 303 SVETVL 308
>pdb|2XA8|L Chain L, Crystal Structure Of The Fab Domain Of Omalizumab At 2.41a
Length = 218
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAK------IIGNSELYIKSGS 88
++TL I+S Q D TY CQ S E + G V I + I S+ +KSG+
Sbjct: 74 DFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT 133
Query: 89 DINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSG 147
++ C++ + + W V N Q G VTE+ ++ S +S +T
Sbjct: 134 -ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKA 188
Query: 148 NY 149
+Y
Sbjct: 189 DY 190
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 59/160 (36%), Gaps = 24/160 (15%)
Query: 21 NDLRFTSLHSDG-----SDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV---- 70
N F H G + W+L + S D G Y C V E I+ Y L+VV
Sbjct: 56 NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR 115
Query: 71 ---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA--NVVNYSQRG--GI 123
I +A + N+ + G D+ C V P I W + N Y G +
Sbjct: 116 HRPILQAGLPANASTVV--GGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYL 171
Query: 124 SVVTEKQTRTSR---LVISKAVTSDSGNYTCAPSSSDGAS 160
V+ +S L + +D+G Y C S+ G +
Sbjct: 172 KVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 59/160 (36%), Gaps = 24/160 (15%)
Query: 21 NDLRFTSLHSDG-----SDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV---- 70
N F H G + W+L + S D G Y C V E I+ Y L+VV
Sbjct: 56 NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP 115
Query: 71 ---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA--NVVNYSQRG--GI 123
I +A + N+ + G D+ C V P I W + N Y G +
Sbjct: 116 HRPILQAGLPANASTVV--GGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYL 171
Query: 124 SVVTEKQTRTSR---LVISKAVTSDSGNYTCAPSSSDGAS 160
V+ +S L + +D+G Y C S+ G +
Sbjct: 172 KVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211
>pdb|1FVD|A Chain A, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
pdb|1FVD|C Chain C, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
pdb|1FVE|A Chain A, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
pdb|1FVE|C Chain C, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
Length = 214
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 27/165 (16%)
Query: 1 VSWIRKR-----DLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQ- 54
V+W +++ L I + L RF+ S G+D +TL I+S Q D TY CQ
Sbjct: 33 VAWYQQKPGKAPKLLIYSASFLESGVPSRFSGSRS-GTD-FTLTISSLQPEDFATYYCQQ 90
Query: 55 -VSTEPKISIGYKLNVVISKAK----IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109
+T P G K+ + + A I S+ +KSG+ ++ C++ ++
Sbjct: 91 HYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT-ASVVCLLNN--------FYP 141
Query: 110 RGANV---VNYSQRGGISV--VTEKQTRTSRLVISKAVTSDSGNY 149
R A V V+ + + G S VTE+ ++ S +S +T +Y
Sbjct: 142 REAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY 186
>pdb|1H5B|B Chain B, T Cell Receptor Valpha11 (Av11s5) Domain
pdb|1H5B|D Chain D, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 124 SVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159
S K+ R S L I A DSG Y CA +S GA
Sbjct: 61 SAFDSKERRYSTLHIRDAQLEDSGTYFCAAEASSGA 96
>pdb|4E41|D Chain D, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E41|I Chain I, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E42|A Chain A, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E42|C Chain C, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
Length = 203
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152
Q G +S T R S L IS + T+DSG Y CA
Sbjct: 54 QNGRLSATTVATERYSLLYISSSQTTDSGVYFCA 87
>pdb|2IAL|A Chain A, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAL|C Chain C, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAM|C Chain C, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|D Chain D, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|I Chain I, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|N Chain N, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|S Chain S, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
Length = 202
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152
Q G +S T R S L IS + T+DSG Y CA
Sbjct: 54 QNGRLSATTVATERYSLLYISSSQTTDSGVYFCA 87
>pdb|3SOB|L Chain L, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 237
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 1 VSWIRKR-----DLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
V+W +++ L I + L RF+ S G+D +TL I+S Q D TY CQ
Sbjct: 56 VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-GTD-FTLTISSLQPEDFATYYCQQ 113
Query: 56 S--TEPKISIGYKLNVVISKAK----IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109
S T P G K+ + + A I S+ +KSG+ ++ C++ + + W
Sbjct: 114 SYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT-ASVVCLLNNFYPREAKVQW- 171
Query: 110 RGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSGNY 149
V N Q G VTE+ ++ S +S +T +Y
Sbjct: 172 ---KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY 209
>pdb|2HFF|A Chain A, Crystal Structure Of Cb2 Fab
pdb|2HFF|L Chain L, Crystal Structure Of Cb2 Fab
Length = 214
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 1 VSWIRKR-----DLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
V+W +++ L I + L RF+ S G+D +TL I+S Q D TY CQ
Sbjct: 33 VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-GTD-FTLTISSLQPEDFATYYCQQ 90
Query: 56 S--TEPKISIGYKLNVVISKAK----IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109
S T P G K+ + + A I S+ +KSG+ ++ C++ + + W
Sbjct: 91 SRITPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT-ASVVCLLNNFYPREAKVQW- 148
Query: 110 RGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSGNY 149
V N Q G VTE+ ++ S +S +T +Y
Sbjct: 149 ---KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY 186
>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High
Affinity Immunoglobulin G Binding
Length = 262
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 40/162 (24%)
Query: 12 LTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYEC-----QVSTEPKISIGYK 66
L +L Y N F H + + L I + + +GTY C T IS+ K
Sbjct: 111 LVYNVLYYRNGKAFKFFHWNSN----LTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166
Query: 67 -------LNVVISKAKIIGNSELYIKSGSDINLTC---VVLETPDPPSFIYWYRGANVVN 116
LN ++ + GN + L+C ++L+ P + +Y G+ +
Sbjct: 167 ELFPAPVLNASVTSPLLEGNL---------VTLSCETKLLLQRPGLQLYFSFYMGSKTLR 217
Query: 117 YSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
G + +E Q T+R DSG Y C ++ DG
Sbjct: 218 -----GRNTSSEYQILTAR-------REDSGLYWCEAATEDG 247
>pdb|1J89|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|C Chain C, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|D Chain D, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|E Chain E, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J88|A Chain A, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|B Chain B, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|C Chain C, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|D Chain D, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|E Chain E, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
Length = 172
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
+L I +++ DSG Y+CQ + Y V S ++ S + G + L C
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVNESEPVYL--EVFSDWLLLQASAEVVMEGQPLFLRCHG 109
Query: 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
D IY+ G + + + IS I+ A DSG Y C
Sbjct: 110 WRNWDVYKVIYYKDGEALKYWYENHNIS-------------ITNATVEDSGTYYC 151
>pdb|2FJF|L Chain L, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|A Chain A, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|C Chain C, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|E Chain E, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|G Chain G, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|J Chain J, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|M Chain M, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|O Chain O, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|Q Chain Q, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|S Chain S, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|U Chain U, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|W Chain W, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJG|L Chain L, Structure Of The G6 Fab, A Phage Derived Fab Fragment, In
Complex With Vegf
pdb|2FJG|A Chain A, Structure Of The G6 Fab, A Phage Derived Fab Fragment, In
Complex With Vegf
pdb|2H9G|A Chain A, Crystal Structure Of Phage Derived Fab Bdf1 With Human
Death Receptor 5 (dr5)
pdb|2H9G|L Chain L, Crystal Structure Of Phage Derived Fab Bdf1 With Human
Death Receptor 5 (dr5)
pdb|2R0K|L Chain L, Protease Domain Of Hgfa With Inhibitor Fab58
pdb|2R0L|L Chain L, Short Form Hgfa With Inhibitory Fab75
pdb|3GRW|L Chain L, Fgfr3 In Complex With A Fab
Length = 214
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 1 VSWIRKR-----DLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
V+W +++ L I + L RF+ S G+D +TL I+S Q D TY CQ
Sbjct: 33 VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-GTD-FTLTISSLQPEDFATYYCQQ 90
Query: 56 S--TEPKISIGYKLNVVISKAK----IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109
S T P G K+ + + A I S+ +KSG+ ++ C++ + + W
Sbjct: 91 SYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT-ASVVCLLNNFYPREAKVQW- 148
Query: 110 RGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSGNY 149
V N Q G VTE+ ++ S +S +T +Y
Sbjct: 149 ---KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY 186
>pdb|1N8Z|A Chain A, Crystal Structure Of Extracellular Domain Of Human Her2
Complexed With Herceptin Fab
Length = 214
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 1 VSWIRKR-----DLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQ- 54
V+W +++ L I + L RF+ S G+D +TL I+S Q D TY CQ
Sbjct: 33 VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRS-GTD-FTLTISSLQPEDFATYYCQQ 90
Query: 55 -VSTEPKISIGYKLNVVISKAK----IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109
+T P G K+ + + A I S+ +KSG+ ++ C++ + + W
Sbjct: 91 HYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT-ASVVCLLNNFYPREAKVQW- 148
Query: 110 RGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSGNY 149
V N Q G VTE+ ++ S +S +T +Y
Sbjct: 149 ---KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY 186
>pdb|1F2Q|A Chain A, Crystal Structure Of The Human High-Affinity Ige Receptor
pdb|1J86|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1J86|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1RPQ|A Chain A, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|B Chain B, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|C Chain C, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|D Chain D, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
Length = 176
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
+L I +++ DSG Y+CQ + Y V S ++ S + G + L C
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVNESEPVYL--EVFSDWLLLQASAEVVMEGQPLFLRCHG 109
Query: 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
D IY+ G + + + IS I+ A DSG Y C
Sbjct: 110 WRNWDVYKVIYYKDGEALKYWYENHNIS-------------ITNATVEDSGTYYC 151
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 25/98 (25%)
Query: 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYW----YRGANVVNYSQRGGISVVTEKQTRT 133
SEL +++G ++LTC+ P F+ W Y V N +
Sbjct: 18 AQSELIVEAGDTLSLTCI------DPDFVRWTFKTYFNEMVEN---------------KK 56
Query: 134 SRLVISKAVTSDSGNYTCAPSSSDGASVVVHVLNGKKF 171
+ + KA + +G YTC+ S+ +S+ V V + K
Sbjct: 57 NEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKL 94
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
K G L+C ++ P P I WYR + S++ +S RT L +
Sbjct: 20 KLGEAAQLSCQIVGRPLPD--IKWYRFGKELIQSRKYKMS----SDGRTHTLTVMTEEQE 73
Query: 145 DSGNYTCAPSSSDG 158
D G YTC ++ G
Sbjct: 74 DEGVYTCIATNEVG 87
>pdb|1J87|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Hexagonal Crystal Form 1
Length = 172
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
+L I +++ DSG Y+CQ + Y V S ++ S + G + L C
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVNESEPVYL--EVFSDWLLLQASAEVVMEGQPLFLRCHG 109
Query: 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
D IY+ G + + + IS I+ A DSG Y C
Sbjct: 110 WRNWDVYKVIYYKDGEALKYWYENHNIS-------------ITNATVEDSGTYYC 151
>pdb|2R8S|L Chain L, High Resolution Structure Of A Specific Synthetic Fab
Bound To P4-P6 Rna Ribozyme Domain
Length = 214
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAK------II 77
RF+ S G+D +TL I+S Q D TY CQ S I+ G V I + I
Sbjct: 61 RFSGSRS-GTD-FTLTISSLQPEDFATYYCQQSYSSPITFGQGTKVEIKRTVAAPSVFIF 118
Query: 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRL 136
S+ +KSG+ ++ C++ + + W V N Q G VTE+ ++ S
Sbjct: 119 PPSDEQLKSGT-ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTY 173
Query: 137 VISKAVTSDSGNY 149
+S +T +Y
Sbjct: 174 SLSSTLTLSKADY 186
>pdb|1ZA3|A Chain A, The Crystal Structure Of The Ysd1 Fab Bound To Dr5
pdb|1ZA3|L Chain L, The Crystal Structure Of The Ysd1 Fab Bound To Dr5
Length = 213
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEP-------KISIGYKLNVVISKAKIIGNSELYIKSG 87
++TL I+S Q D TY CQ S+ P K+ I K V I S+ +KSG
Sbjct: 70 DFTLTISSLQPEDFATYYCQSSSSPYTFGQGTKVEI--KRTVAAPSVFIFPPSDEQLKSG 127
Query: 88 SDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDS 146
+ ++ C++ + + W V N Q G VTE+ ++ S +S +T
Sbjct: 128 T-ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSK 182
Query: 147 GNY 149
+Y
Sbjct: 183 ADY 185
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 16/75 (21%)
Query: 38 LKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKI-------------IGNSELYI 84
L I + +L DSG Y+C V + + K ++V+S+ KI I + ++ +
Sbjct: 184 LIIHNPELEDSGRYDCYVHYD---DVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINV 240
Query: 85 KSGSDINLTCVVLET 99
G N+TC + T
Sbjct: 241 TIGEPANITCTAVST 255
>pdb|3HI1|H Chain H, Structure Of Hiv-1 Gp120 (Core With V3) In Complex With
Cd4-Binding- Site Antibody F105
pdb|3HI1|B Chain B, Structure Of Hiv-1 Gp120 (Core With V3) In Complex With
Cd4-Binding- Site Antibody F105
Length = 225
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 23/134 (17%)
Query: 2 SWIRKRDLHILT-VGILTYTNDLRFT-SLHS-------DGSDEWTLKIASSQLRDSGTYE 52
SWIR+ L +G + Y+ ++ SL S ++++LK+ S D+ Y
Sbjct: 35 SWIRQSPGKGLQWIGYIYYSGSTNYSPSLKSRVTISVETAKNQFSLKLTSMTAADTAVYY 94
Query: 53 CQVSTEPKISIG-YKLN-------VVISKAKIIGNSELYIK------SGSDINLTCVVLE 98
C P + G Y+L+ V +S A G S + SG L C+V +
Sbjct: 95 CARGPVPAVFYGDYRLDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD 154
Query: 99 TPDPPSFIYWYRGA 112
P + W GA
Sbjct: 155 YFPEPVTVSWNSGA 168
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISK 140
+ + G D L C V TP P I W + Y++ + + + L I
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVP--RITWLLNGQPIQYAR-------STCEAGVAELHIQD 70
Query: 141 AVTSDSGNYTC 151
A+ D G YTC
Sbjct: 71 ALPEDHGTYTC 81
>pdb|3HG1|D Chain D, Germline-Governed Recognition Of A Cancer Epitope By An
Immunodominant Human T Cell Receptor
Length = 194
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 3 WIRKRDLHILTVGILTYTN----DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
W R+ + + Y+N D RFT+ + S +L I SQ DS TY C V+
Sbjct: 34 WYRQYSGKSPELIMFIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVNVA 93
Query: 59 PKISIG 64
K + G
Sbjct: 94 GKSTFG 99
>pdb|1OSP|L Chain L, Crystal Structure Of Outer Surface Protein A Of Borrelia
Burgdorferi Complexed With A Murine Monoclonal Antibody
Fab
Length = 214
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 30 SDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
SD ++TL I S Q D TY CQ P + G + I +A
Sbjct: 65 SDSGKDYTLSITSLQTEDVATYFCQQYWSPPPTFGGGTKLEIKRA 109
>pdb|2ESV|E Chain E, Structure Of The Hla-E-VmaprtlilKK50.4 TCR COMPLEX
Length = 240
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISI---GYKL-------NVVISKAKIIGNSELYIKS 86
TLK+ ++L DSG Y C S + G +L NV + + SE I
Sbjct: 74 TLKVQPAELEDSGVYFCASSQDRDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISH 133
Query: 87 GSDINLTCVVLE-TPDPPSFIYWYRGANV 114
L C+ PD +W G V
Sbjct: 134 TQKATLVCLATGFYPDHVELSWWVNGKEV 162
>pdb|2ZG2|A Chain A, Crystal Structure Of Two N-Terminal Domains Of Native
Siglec-5
Length = 216
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 15/63 (23%)
Query: 102 PPSFIYWYRGANVVNYSQ---------------RGGISVVTEKQTRTSRLVISKAVTSDS 146
PP ++YW+R + Y++ +G ++ + Q + L I A D+
Sbjct: 36 PPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDT 95
Query: 147 GNY 149
G+Y
Sbjct: 96 GSY 98
>pdb|3U30|B Chain B, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
pdb|3U30|E Chain E, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
Length = 214
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 1 VSWIRKR-----DLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
V+W +++ L I + L RF+ S G+D +TL I+S Q D TY CQ
Sbjct: 33 VAWYQQKPGKAPKLLIYSAKFLYSGVPSRFSGSGS-GTD-FTLTISSLQPEDFATYYCQQ 90
Query: 56 S--TEPKISIGYKLNVVISKAK----IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109
S T P G K+ + + A I S+ +KSG+ ++ C++ + + W
Sbjct: 91 SYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT-ASVVCLLNNFYPREAKVQW- 148
Query: 110 RGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSGNY 149
V N Q G VTE+ ++ S +S +T +Y
Sbjct: 149 ---KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY 186
>pdb|1U6A|H Chain H, Crystal Structure Of The Broadly Neutralizing Anti-Hiv Fab
F105
Length = 224
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 23/134 (17%)
Query: 2 SWIRKRDLHILT-VGILTYTNDLRFT-SLHS-------DGSDEWTLKIASSQLRDSGTYE 52
SWIR+ L +G + Y+ ++ SL S ++++LK+ S D+ Y
Sbjct: 35 SWIRQSPGKGLQWIGYIYYSGSTNYSPSLKSRVTISVETAKNQFSLKLTSMTAADTAVYY 94
Query: 53 CQVSTEPKISIG-YKLN-------VVISKAKIIGNSELYIK------SGSDINLTCVVLE 98
C P + G Y+L+ V +S A G S + SG L C+V +
Sbjct: 95 CARGPVPAVFYGDYRLDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD 154
Query: 99 TPDPPSFIYWYRGA 112
P + W GA
Sbjct: 155 YFPEPVTVSWNSGA 168
>pdb|2ZG1|A Chain A, Crystal Structure Of Two N-Terminal Domains Of Siglec-5 In
Complex With 6'-Sialyllactose
pdb|2ZG3|A Chain A, Crystal Structure Of Two N-terminal Domains Of Native
Siglec-5 In Complex With 3'-sialyllactose
Length = 214
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 15/63 (23%)
Query: 102 PPSFIYWYRGANVVNYSQ---------------RGGISVVTEKQTRTSRLVISKAVTSDS 146
PP ++YW+R + Y++ +G ++ + Q + L I A D+
Sbjct: 35 PPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDT 94
Query: 147 GNY 149
G+Y
Sbjct: 95 GSY 97
>pdb|2XRA|H Chain H, Crystal Structure Of The Hk20 Fab In Complex With A Gp41
Mimetic 5-Helix
Length = 223
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 113 NVVNYSQR--GGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152
++ NY+Q+ G ++++T++ T T+ + + + DS Y CA
Sbjct: 54 DITNYAQKFQGRVTIITDESTSTAYMELRSLTSEDSAVYYCA 95
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141
+ + G +C P P + W R V++ S R ++ K T IS
Sbjct: 18 MTVYEGESARFSCDTDGEPVPT--VTWLRKGQVLSTSARHQVTTTKYKST----FEISSV 71
Query: 142 VTSDSGNYTCAPSSSDGASVVVHVLNGKK 170
SD GNY+ +S+G L +K
Sbjct: 72 QASDEGNYSVVVENSEGKQEAEFTLTIQK 100
>pdb|3EO9|L Chain L, Crystal Structure The Fab Fragment Of Efalizumab
pdb|3EOA|L Chain L, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form I
pdb|3EOA|A Chain A, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form I
pdb|3EOB|L Chain L, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form Ii
pdb|3EOB|A Chain A, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form Ii
Length = 214
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAK------IIGNSELYIKSGS 88
++TL I+S Q D TY CQ E ++ G V I + I S+ +KSG+
Sbjct: 70 DFTLTISSLQPEDFATYYCQQHNEYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT 129
Query: 89 DINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSG 147
++ C++ + + W V N Q G VTE+ ++ S +S +T
Sbjct: 130 -ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKA 184
Query: 148 NY 149
+Y
Sbjct: 185 DY 186
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141
+ + G +C P P + W R V++ S R ++ K T IS
Sbjct: 24 MTVYEGESARFSCDTDGEPVPT--VTWLRKGQVLSTSARHQVTTTKYKST----FEISSV 77
Query: 142 VTSDSGNYTCAPSSSDGASVVVHVLNGKK 170
SD GNY+ +S+G L +K
Sbjct: 78 QASDEGNYSVVVENSEGKQEAEFTLTIQK 106
>pdb|1TZH|A Chain A, Crystal Structure Of The Fab Yads1 Complexed With H-Vegf
pdb|1TZH|L Chain L, Crystal Structure Of The Fab Yads1 Complexed With H-Vegf
Length = 213
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEP-------KISIGYKLNVVISKAKIIGNSELYIKSG 87
++TL I+S Q D TY CQ S P K+ I K V I S+ +KSG
Sbjct: 70 DFTLTISSLQPEDFATYYCQSSASPATFGQGTKVEI--KRTVAAPSVFIFPPSDEQLKSG 127
Query: 88 SDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDS 146
+ ++ C++ + + W V N Q G VTE+ ++ S +S +T
Sbjct: 128 T-ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSK 182
Query: 147 GNY 149
+Y
Sbjct: 183 ADY 185
>pdb|2WUB|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|Q Chain Q, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 214
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 19/161 (11%)
Query: 1 VSWIRKR-----DLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
V+W +++ L I + L RF+ S G+D +TL I+S Q D TY CQ
Sbjct: 33 VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-GTD-FTLTISSLQPEDFATYYCQQ 90
Query: 56 STEPKISIGYKLNVVISKAK------IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109
S + G V I + I S+ +KSG+ ++ C++ + + W
Sbjct: 91 SNRAPATFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT-ASVVCLLNNFYPREAKVQW- 148
Query: 110 RGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSGNY 149
V N Q G VTE+ ++ S +S +T +Y
Sbjct: 149 ---KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY 186
>pdb|1DFB|L Chain L, Structure Of A Human Monoclonal Antibody Fab Fragment
Against Gp41 Of Human Immunodeficiency Virus Type I
Length = 212
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 35 EWTLKIASSQLRDSGTYECQ----VSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDI 90
E+TL I+S Q D TY CQ S P + K V I S+ +KSG+
Sbjct: 70 EFTLTISSLQPDDFATYYCQQYNSYSFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGT-A 128
Query: 91 NLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSGNY 149
++ C++ + + W V N Q G VTE+ ++ S +S +T +Y
Sbjct: 129 SVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY 184
>pdb|3C6L|A Chain A, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3C6L|E Chain E, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
Length = 185
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
D RFT + +++L IA SQ DS TY C S
Sbjct: 58 DGRFTIFFNKREKKFSLHIADSQPGDSATYFCAAS 92
>pdb|2YWY|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|C Chain C, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|D Chain D, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR---GGISVVT-EKQTRTSRLVISK 140
++G + + C + D WYR Q+ GG V T K +++ L I
Sbjct: 13 ETGESLTINCALKNAADDLERTDWYRTTLGSTNEQKISIGGRYVETVNKGSKSFSLRIRD 72
Query: 141 AVTSDSGNYTCAPSSSDGASVVVHVLNGKK 170
DSG Y C SD S + + G+K
Sbjct: 73 LRVEDSGTYKCGAYFSDAMSNYSYPIPGEK 102
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYEC 53
R+ + GS ++L+I ++ DSGTY+C
Sbjct: 54 RYVETVNKGSKSFSLRIRDLRVEDSGTYKC 83
>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From
Human Obscurin-Like Protein 1
Length = 104
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 108 WYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
WY+ V S+ +V + R RL++ +A DSG + C
Sbjct: 43 WYKDGQKVEESEL----LVVKMDGRKHRLILPEAKVQDSGEFEC 82
>pdb|2FJH|L Chain L, Structure Of The B20-4 Fab, A Phage Derived Fab Fragment,
In Complex With Vegf
pdb|2FJH|A Chain A, Structure Of The B20-4 Fab, A Phage Derived Fab Fragment,
In Complex With Vegf
Length = 214
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAK------IIGNSELYIKSGS 88
++TL I+S Q D TY CQ S ++ G V I + I S+ +KSG+
Sbjct: 70 DFTLTISSLQPEDFATYYCQQSNTSPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT 129
Query: 89 DINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSG 147
++ C++ + + W V N Q G VTE+ ++ S +S +T
Sbjct: 130 -ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKA 184
Query: 148 NY 149
+Y
Sbjct: 185 DY 186
>pdb|3G6J|E Chain E, C3b In Complex With A C3b Specific Fab
pdb|3G6J|G Chain G, C3b In Complex With A C3b Specific Fab
Length = 214
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 1 VSWIRKR-----DLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
V+W +++ L I + L RF+ S G+D +TL I+S Q D TY CQ
Sbjct: 33 VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-GTD-FTLTISSLQPEDFATYYCQQ 90
Query: 56 S--TEPKISIGYKLNVVISKAK----IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109
S T P G K+ + + A I S+ +KSG+ ++ C++ + + W
Sbjct: 91 SYATLPTFEQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT-ASVVCLLNNFYPREAKVQW- 148
Query: 110 RGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSGNY 149
V N Q G VTE+ ++ S +S +T +Y
Sbjct: 149 ---KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY 186
>pdb|2EYS|B Chain B, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|B Chain B, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|D Chain D, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
Length = 243
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 41 ASSQLRDSGTYECQVSTEPKISIGYKL-NVVISKAKIIGNSELYIKSGSDINLTCVVLE- 98
ASS LRD G YE ++++ L NV + + SE I L C+
Sbjct: 90 ASSGLRDRGLYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF 149
Query: 99 TPDPPSFIYWYRGANV 114
PD +W G V
Sbjct: 150 YPDHVELSWWVNGKEV 165
>pdb|3HUJ|F Chain F, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3HUJ|H Chain H, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3VWJ|D Chain D, Ternary Crystal Structure Of The Human Nkt Tcr-Cd1d-C20:2
Complex
pdb|3VWK|D Chain D, Ternary Crystal Structure Of The Human Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide Complex
Length = 246
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 41 ASSQLRDSGTYECQVSTEPKISIGYKL-NVVISKAKIIGNSELYIKSGSDINLTCVVLE- 98
ASS LRD G YE ++++ L NV + + SE I L C+
Sbjct: 93 ASSGLRDRGLYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF 152
Query: 99 TPDPPSFIYWYRGANV 114
PD +W G V
Sbjct: 153 YPDHVELSWWVNGKEV 168
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 24/117 (20%)
Query: 56 STEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV 115
S++P +S G I G S+L ++ G +I L C P F+ W
Sbjct: 24 SSQPSVSPGEPSPPSIHP----GKSDLIVRVGDEIRLLCT------DPGFVKW------- 66
Query: 116 NYSQRGGISVVTE-KQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHVLNGKKF 171
++ E + + + + KA +++G YTC S+ V V + K
Sbjct: 67 ------TFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKL 117
>pdb|2PO6|D Chain D, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|2PO6|H Chain H, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
Length = 244
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 41 ASSQLRDSGTYECQVSTEPKISIGYKL-NVVISKAKIIGNSELYIKSGSDINLTCVVLE- 98
ASS LRD G YE ++++ L NV + + SE I L C+
Sbjct: 91 ASSGLRDRGLYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF 150
Query: 99 TPDPPSFIYWYRGANV 114
PD +W G V
Sbjct: 151 YPDHVELSWWVNGKEV 166
>pdb|1TVD|A Chain A, Variable Domain Of T Cell Receptor Delta Chain
pdb|1TVD|B Chain B, Variable Domain Of T Cell Receptor Delta Chain
Length = 116
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 22/87 (25%)
Query: 84 IKSGSDINLTCV---VLETPDPPSFIYWYR-----GANVVNYSQ----------RGGISV 125
+ SGS++ L C V PD ++WYR V Y +G SV
Sbjct: 12 VASGSEVVLLCTYDTVYSNPD----LFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSV 67
Query: 126 VTEKQTRTSRLVISKAVTSDSGNYTCA 152
+ LVIS T DS Y CA
Sbjct: 68 KHILTQKAFHLVISPVRTEDSATYYCA 94
>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
Length = 289
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 38 LKIASSQLRDSGTYECQVS 56
L I S++L DSGTY C V+
Sbjct: 244 LHIPSAELEDSGTYTCNVT 262
>pdb|3OPZ|H Chain H, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|I Chain I, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|J Chain J, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
Length = 222
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 109 YRGANVVNYSQR--GGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159
Y G +NY+++ G + + + + T+ + +S + DS Y CA DG+
Sbjct: 51 YLGGGYINYNEKFKGKVILTADTSSSTAYMQLSSLTSEDSAIYYCARGHYDGS 103
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 32/135 (23%)
Query: 46 RDSGTYECQVSTE-----PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETP 100
+D+G Y C VS E ++SI + V SK I S + I G+ LTC +
Sbjct: 75 KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTI--GNRAVLTCSEHDG- 131
Query: 101 DPPSFIYWYRGANVVNYSQRGGISVVT--EKQTR------------TSRLVISKAVTSDS 146
PPS W+ + GIS++T K+TR + L+ DS
Sbjct: 132 SPPSEYSWF----------KDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181
Query: 147 GNYTCAPSSSDGASV 161
G Y C + G ++
Sbjct: 182 GEYYCQAQNGYGTAM 196
>pdb|3M8O|L Chain L, Human Iga1 Fab Fragment
pdb|3QNX|A Chain A, Orthorhombic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|A Chain A, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|C Chain C, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNZ|A Chain A, Orthorhombic Form Of Igg1 Fab Fragment (in Complex With
Antigenic Tubulin Peptide) Sharing Same Fv As Iga
pdb|3QO0|A Chain A, Monoclinic Form Of Igg1 Fab Fragment (In Complex With
Antigenic Peptide) Sharing Same Fv As Iga
pdb|3QO1|A Chain A, Monoclinic Form Of Igg1 Fab Fragment (apo Form) Sharing
Same Fv As Iga
Length = 219
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGY------KLNVVISKAKIIGNSELYIKSGS 88
++TLKI + D+GTY C + + ++ G K V I S+ +KSG+
Sbjct: 75 DFTLKIIRVEAEDAGTYYCMQNKQTPLTFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGT 134
Query: 89 DINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSG 147
++ C++ + + W V N Q G VTE+ ++ S +S +T
Sbjct: 135 -ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKA 189
Query: 148 NY 149
+Y
Sbjct: 190 DY 191
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 54/151 (35%), Gaps = 24/151 (15%)
Query: 21 NDLRFTSLHSDG-----SDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV---- 70
N F H G + W+L S D G Y C V E I+ Y L+VV
Sbjct: 55 NGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSP 114
Query: 71 ---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA--NVVNYSQRG--GI 123
I +A + N+ + G D+ C V P I W + N Y G +
Sbjct: 115 HRPILQAGLPANASTVV--GGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYL 170
Query: 124 SVVTEKQTRTSR---LVISKAVTSDSGNYTC 151
V+ +S L + +D+G Y C
Sbjct: 171 KVLKHSGINSSNAEVLALFNVTEADAGEYIC 201
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
G ++ +C +P+P I W+R ++ +++ + + + L + + SD
Sbjct: 19 GEEMTFSCRASGSPEPA--ISWFRNGKLIEENEKYIL------KGSNTELTVRNIINSDG 70
Query: 147 GNYTCAPSSSDG 158
G Y C ++ G
Sbjct: 71 GPYVCRATNKAG 82
>pdb|1KCR|L Chain L, Crystal Structure Of Antibody Pc283 In Complex With Ps1
Peptide
Length = 213
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLH-----SDGSDEWTLKIASSQLRDSGTYEC-Q 54
VSW +++ + +L Y R+T + S + ++TLKI+S Q D Y C Q
Sbjct: 33 VSWYQQKPEQ--SPKLLIYGASNRYTGVPDRFTGSGSATDFTLKISSVQAEDLADYHCGQ 90
Query: 55 VSTEPKISIGYKLNV 69
+ P G KL +
Sbjct: 91 TYSYPTFGGGTKLAI 105
>pdb|3PV6|A Chain A, Crystal Structure Of Nkp30 Bound To Its Ligand B7-H6
pdb|3PV7|A Chain A, Crystal Structure Of Nkp30 Ligand B7-H6
Length = 248
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVSTEPKISIG-YKLNVVISKAKIIGNSELYIKSGSD 89
S + +L++ QL ++G Y C+V P + G +L VV S A + ++ +K D
Sbjct: 79 SGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENED 136
>pdb|3AUV|A Chain A, Predicting Amino Acid Preferences In The Complementarity
Determining Regions Of An Antibody-Antigen Recognition
Interface
pdb|3AUV|B Chain B, Predicting Amino Acid Preferences In The Complementarity
Determining Regions Of An Antibody-Antigen Recognition
Interface
pdb|3AUV|C Chain C, Predicting Amino Acid Preferences In The Complementarity
Determining Regions Of An Antibody-Antigen Recognition
Interface
pdb|3AUV|D Chain D, Predicting Amino Acid Preferences In The Complementarity
Determining Regions Of An Antibody-Antigen Recognition
Interface
pdb|3AUV|E Chain E, Predicting Amino Acid Preferences In The Complementarity
Determining Regions Of An Antibody-Antigen Recognition
Interface
pdb|3AUV|F Chain F, Predicting Amino Acid Preferences In The Complementarity
Determining Regions Of An Antibody-Antigen Recognition
Interface
Length = 276
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 23/133 (17%)
Query: 1 VSWIRKR-----DLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQ- 54
V+W +++ L I + L RF+ S ++TL I+S Q D TY CQ
Sbjct: 44 VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSG--SGSGTDFTLTISSLQPEDFATYYCQQ 101
Query: 55 -VSTEPKISIGYKLNV--------------VISKAKIIGNSELYIKSGSDINLTCVVLET 99
+T P G K+ + S+ +++ + ++ G + L+C
Sbjct: 102 HYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGF 161
Query: 100 PDPPSFIYWYRGA 112
+I+W R A
Sbjct: 162 TISDYWIHWVRQA 174
>pdb|1H5B|C Chain C, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 124 SVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159
S K+ R S L I A DSG Y CA +S G+
Sbjct: 61 SAFDSKERRYSTLHIRDAQLEDSGTYFCAAEASSGS 96
>pdb|3BDY|L Chain L, Dual Specific Bh1 Fab In Complex With Vegf
pdb|3BE1|L Chain L, Dual Specific Bh1 Fab In Complex With The Extracellular
Domain Of Her2ERBB-2
Length = 218
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 35 EWTLKIASSQLRDSGTYECQ--VSTEPKISIGYKLNVVISKAK----IIGNSELYIKSGS 88
++TL I+S Q D TY CQ +T P G K+ + + A I S+ +KSG+
Sbjct: 74 DFTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT 133
Query: 89 DINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSG 147
++ C++ + + W V N Q G VTE+ ++ S +S +T
Sbjct: 134 -ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKA 188
Query: 148 NY 149
+Y
Sbjct: 189 DY 190
>pdb|3P0V|L Chain L, Anti-EgfrHER3 FAB DL11 ALONE
pdb|3P0V|M Chain M, Anti-EgfrHER3 FAB DL11 ALONE
pdb|3P0Y|L Chain L, Anti-EgfrHER3 FAB DL11 IN COMPLEX WITH DOMAIN III OF EGFR
Extracellular Region
pdb|3P11|L Chain L, Anti-EgfrHER3 FAB DL11 IN COMPLEX WITH DOMAINS I-Iii Of
The Her3 Extracellular Region
Length = 214
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 19/161 (11%)
Query: 1 VSWIRKR-----DLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
V+W +++ L I + L RF+ S G+D +TL I+S Q D TY CQ
Sbjct: 33 VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-GTD-FTLTISSLQPEDFATYYCQQ 90
Query: 56 STEPKISIGYKLNVVISKAK------IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109
S + G V I + I S+ +KSG+ ++ C++ + + W
Sbjct: 91 SEPEPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT-ASVVCLLNNFYPREAKVQW- 148
Query: 110 RGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSGNY 149
V N Q G VTE+ ++ S +S +T +Y
Sbjct: 149 ---KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY 186
>pdb|3UTT|E Chain E, 1e6-A0201-Alwgpdpaaa Complex, Triclinic
pdb|3UTT|J Chain J, 1e6-A0201-Alwgpdpaaa Complex, Triclinic
Length = 245
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKIS-------IGYKL-------NVVISKAKIIGNSEL 82
TLKI S+ RDS Y C S K++ G +L NV + + SE
Sbjct: 75 TLKIQPSEPRDSAVYFCASSLWEKLAKNIQYFGAGTRLSVLEDLKNVFPPEVAVFEPSEA 134
Query: 83 YIKSGSDINLTCVVLE-TPDPPSFIYWYRGANV 114
I L C+ PD +W G V
Sbjct: 135 EISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 20/95 (21%)
Query: 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTE-KQTRTSRL 136
G S+L ++ G +I L C P F+ W ++ E + + +
Sbjct: 17 GKSDLIVRVGDEIRLLCT------DPGFVKW-------------TFEILDETNENKQNEW 57
Query: 137 VISKAVTSDSGNYTCAPSSSDGASVVVHVLNGKKF 171
+ KA +++G YTC S+ V V + K
Sbjct: 58 ITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKL 92
>pdb|3UTP|E Chain E, 1e6 Tcr Specific For Hla-A0201-Alwgpdpaaa
pdb|3UTP|L Chain L, 1e6 Tcr Specific For Hla-A0201-Alwgpdpaaa
pdb|3UTS|E Chain E, 1e6-A0201-Alwgpdpaaa Complex, Monoclinic
pdb|3UTS|J Chain J, 1e6-A0201-Alwgpdpaaa Complex, Monoclinic
Length = 246
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKIS-------IGYKL-------NVVISKAKIIGNSEL 82
TLKI S+ RDS Y C S K++ G +L NV + + SE
Sbjct: 76 TLKIQPSEPRDSAVYFCASSLWEKLAKNIQYFGAGTRLSVLEDLKNVFPPEVAVFEPSEA 135
Query: 83 YIKSGSDINLTCVVLE-TPDPPSFIYWYRGANV 114
I L C+ PD +W G V
Sbjct: 136 EISHTQKATLVCLATGFYPDHVELSWWVNGKEV 168
>pdb|3PGF|L Chain L, Crystal Structure Of Maltose Bound Mbp With A
Conformationally Specific Synthetic Antigen Binder (Sab)
Length = 215
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELY 83
RF+ S G+D +TL I+S Q D TY CQ S+ ++ G V I + + ++
Sbjct: 62 RFSGSRS-GTD-FTLTISSLQPEDFATYYCQQSSYIPVTFGQGTKVEI--KRTVAAPSVF 117
Query: 84 IKSGSDINL 92
I SD L
Sbjct: 118 IFPPSDSQL 126
>pdb|3LD8|B Chain B, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|B Chain B, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 220
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQ--VSTEPKISIGYKLNVVISKAK 75
RFT S G+D +TL I S Q D G Y CQ +S G KL + + AK
Sbjct: 67 RFTGSGS-GTD-YTLTITSVQAEDMGQYFCQQGISNPYTFGAGTKLEIKRADAK 118
>pdb|2HFG|L Chain L, Crystal Structure Of Hbr3 Bound To Cb3s-fab
Length = 214
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 27/165 (16%)
Query: 1 VSWIRKR-----DLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
V+W +++ L I + L RF+ S G+D +TL I+S Q D TY CQ
Sbjct: 33 VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-GTD-FTLTISSLQPEDFATYYCQQ 90
Query: 56 S--TEPKISIGYKLNVVISKAK----IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109
S + P G K+ + + A I S+ +KSG+ ++ C++ ++
Sbjct: 91 SQISPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT-ASVVCLLNN--------FYP 141
Query: 110 RGANV---VNYSQRGGISV--VTEKQTRTSRLVISKAVTSDSGNY 149
R A V V+ + + G S VTE+ ++ S +S +T +Y
Sbjct: 142 REAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY 186
>pdb|2JJU|A Chain A, Structure Of Human Signal Regulatory Protein (Sirp) Beta
pdb|2JJU|B Chain B, Structure Of Human Signal Regulatory Protein (Sirp) Beta
Length = 127
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANV---VNYSQRGG-------ISVVTEKQTRT 133
+ +G L C + + P I W+RGA + Y+Q+ G +S +T++
Sbjct: 15 VAAGESATLRCA-MTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLD 73
Query: 134 SRLVISKAVTSDSGNYTC 151
+ IS +D+G Y C
Sbjct: 74 FSISISNITPADAGTYYC 91
>pdb|4F33|B Chain B, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F33|D Chain D, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F33|F Chain F, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F33|H Chain H, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F3F|B Chain B, Crystal Structure Of Msln7-64 Morab-009 Fab Complex
Length = 231
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 44 QLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPP 103
QL+ SG E + +P S+ K++ S G + ++K +L + L TP
Sbjct: 3 QLQQSGP-ELE---KPGASV--KISCKASGYSFTGYTMNWVKQSHGKSLEWIGLITP--- 53
Query: 104 SFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
Y GA+ N RG ++ +K + T+ + + + DS Y CA DG
Sbjct: 54 -----YNGASSYNQKFRGKATLTVDKSSSTAYMDLLSLTSEDSAVYFCARGGYDG 103
>pdb|3QIU|C Chain C, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|C Chain C, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
Length = 205
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKL 67
TL I +QL DSGTY C + EP S G KL
Sbjct: 73 TLHIRDAQLEDSGTYFC--AAEP--SSGQKL 99
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVV 162
+ G + + + R S L I A DSG Y CA S G +V
Sbjct: 57 ENGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAAEPSSGQKLV 100
>pdb|1KAC|B Chain B, Knob Domain From Adenovirus Serotype 12 In Complex With
Domain 1 Of Its Cellular Receptor Car
pdb|1P69|B Chain B, Structural Basis For Variation In Adenovirus Affinity For
The Cellular Receptor Car (P417s Mutant)
pdb|1P6A|B Chain B, Structural Basis For Variation In Asdenovirus Affinity For
The Cellular Receptor Car (S489y Mutant)
Length = 124
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
+NDL+ S + ++ + + QL D GTY+C+V P ++ K+++V+
Sbjct: 75 SNDLK--------SGDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVV 117
>pdb|3FZU|H Chain H, Igg1 Fab Characterized By HD EXCHANGE
pdb|3FZU|C Chain C, Igg1 Fab Characterized By HD EXCHANGE
Length = 223
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELY 83
RFT + + L++ S + D+ Y C T S G + V +S A G S
Sbjct: 69 RFTISRENAKNTLFLQMNSLRAEDTAVYYCASLTTGSDSWGQGVLVTVSSASTKGPSVFP 128
Query: 84 IK------SGSDINLTCVVLETPDPPSFIYWYRGA 112
+ SG L C+V + P + W GA
Sbjct: 129 LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA 163
>pdb|4FNL|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody C05
pdb|4FNL|M Chain M, Crystal Structure Of Broadly Neutralizing Antibody C05
pdb|4FP8|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|M Chain M, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|N Chain N, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|O Chain O, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FQR|BB Chain b, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|DD Chain d, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|FF Chain f, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|HH Chain h, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|JJ Chain j, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|LL Chain l, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|NN Chain n, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|PP Chain p, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|RR Chain r, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|TT Chain t, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|VV Chain v, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|XX Chain x, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
Length = 214
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAK------IIGNSELYIKSGS 88
++TL I+S Q D GTY CQ + G VVI + I S+ +KSG+
Sbjct: 70 DFTLIISSLQPEDVGTYYCQQYDGLPFTFGGGTKVVIKRTVAAPSVFIFPPSDEQLKSGT 129
Query: 89 DINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSG 147
++ C++ + + W V N Q G VTE+ ++ S +S +T
Sbjct: 130 -ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKA 184
Query: 148 NY 149
+Y
Sbjct: 185 DY 186
>pdb|3QEH|B Chain B, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|D Chain D, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|F Chain F, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|H Chain H, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
Length = 218
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 35 EWTLKIASSQLRDSGTYEC-QVSTEPKISIGYKLNVVISKAK----IIGNSELYIKSGSD 89
E+TLKI+ + D G Y C Q P G K+ + + A I S+ +KSG+
Sbjct: 75 EFTLKISRVEAEDVGVYYCMQAKESPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT- 133
Query: 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSGN 148
++ C++ + + W V N Q G VTE+ ++ S +S +T +
Sbjct: 134 ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKAD 189
Query: 149 Y 149
Y
Sbjct: 190 Y 190
>pdb|1RSF|A Chain A, Nmr Structure Of Monomeric Car D1 Domain
Length = 126
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
+NDL+ S + ++ + + QL D GTY+C+V P ++ K+++V+
Sbjct: 77 SNDLK--------SGDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVV 119
>pdb|2JJV|A Chain A, Structure Of Human Signal Regulatory Protein (sirp)
Beta(2)
pdb|2JJV|B Chain B, Structure Of Human Signal Regulatory Protein (sirp)
Beta(2)
Length = 127
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV---VNYSQRGG-------ISV 125
I + + + +G L C V P I W+RGA + Y+Q+ G +S
Sbjct: 7 IQPDKSISVAAGESATLHCTVTSL-IPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSD 65
Query: 126 VTEKQTRTSRLVISKAVTSDSGNYTC 151
+T++ + IS +D+G Y C
Sbjct: 66 LTKRNNMDFSIRISNITPADAGTYYC 91
>pdb|2J12|B Chain B, Ad37 Fibre Head In Complex With Car D1
pdb|2J1K|A Chain A, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|B Chain B, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|G Chain G, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|J Chain J, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|K Chain K, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|O Chain O, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|P Chain P, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|T Chain T, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|V Chain V, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|X Chain X, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Y Chain Y, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Z Chain Z, Cav-2 Fibre Head In Complex With Car D1
Length = 128
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
+NDL+ S + ++ + + QL D GTY+C+V P ++ K+++V+
Sbjct: 83 SNDLK--------SGDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVV 125
>pdb|3T0E|E Chain E, Crystal Structure Of A Complete Ternary Complex Of T Cell
Receptor, Peptide-Mhc And Cd4
Length = 373
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLT 93
TL ++ +L+DSGT+ C V K + +K+++V+ A +S +Y K G + +
Sbjct: 143 TLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVL-AFQKASSIVYKKEGEQVEFS 197
>pdb|2WBW|B Chain B, Ad37 Fibre Head In Complex With Car D1 And Sialic Acid
Length = 128
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
+NDL+ S + ++ + + QL D GTY+C+V P ++ K+++V+
Sbjct: 83 SNDLK--------SGDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVV 125
>pdb|2W9L|A Chain A, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|B Chain B, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|G Chain G, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|J Chain J, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|K Chain K, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|O Chain O, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|P Chain P, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|T Chain T, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|V Chain V, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|X Chain X, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|Y Chain Y, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|Z Chain Z, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
Length = 124
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
+NDL+ S + ++ + + QL D GTY+C+V P ++ K+++V+
Sbjct: 80 SNDLK--------SGDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVV 122
>pdb|1F5W|A Chain A, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain
pdb|1F5W|B Chain B, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain
pdb|1EAJ|A Chain A, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain At 1.35 Angstrom Resolution
pdb|1EAJ|B Chain B, Dimeric Structure Of The Coxsackie Virus And Adenovirus
Receptor D1 Domain At 1.35 Angstrom Resolution
Length = 126
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
+NDL+ S + ++ + + QL D GTY+C+V P ++ K+++V+
Sbjct: 81 SNDLK--------SGDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVV 123
>pdb|2PCP|B Chain B, Antibody Fab Complexed With Phencyclidine
pdb|2PCP|D Chain D, Antibody Fab Complexed With Phencyclidine
Length = 215
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 105 FIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157
+IY G N N+ +G ++ +K + T+ + + + DS Y C S+ D
Sbjct: 50 YIYPNNGGNGYNHKFKGKATLTVDKSSSTAYMDVRTLTSEDSAVYYCGRSTWD 102
>pdb|1WIO|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIO|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIP|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIP|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIQ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
pdb|1WIQ|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
Length = 363
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLT 93
TL ++ +L+DSGT+ C V K + +K+++V+ A +S +Y K G + +
Sbjct: 143 TLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVL-AFQKASSIVYKKEGEQVEFS 197
>pdb|1F11|A Chain A, F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
pdb|1F11|C Chain C, F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
Length = 218
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
++TL I + D+ TY CQ S E + G + I +A
Sbjct: 74 DFTLNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEIKRA 113
>pdb|1JEW|R Chain R, Cryo-Em Structure Of Coxsackievirus B3(M Strain) With Its
Cellular Receptor, Coxsackievirus And Adenovirus
Receptor (Car)
Length = 120
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
+NDL+ S + ++ + + QL D GTY+C+V P ++ K+++V+
Sbjct: 75 SNDLK--------SGDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVV 117
>pdb|3QG6|B Chain B, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
pdb|3QG6|H Chain H, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
pdb|3QG7|H Chain H, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
Length = 213
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 11/110 (10%)
Query: 11 ILTVGILTYTNDL--RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLN 68
I + G TY L RF+ +++ L++ S + D+GTY C T G
Sbjct: 52 ISSYGTTTYNPSLKSRFSITRDTSKNQFFLQLHSVTIEDTGTYFC---TREGDYWGQGTT 108
Query: 69 VVISKAKIIGNSELYIK------SGSDINLTCVVLETPDPPSFIYWYRGA 112
+ +S AK S + +GS + L C+V P + W G+
Sbjct: 109 LTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS 158
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNV-VISKAK--IIGNSE-LYIKSGSDINL 92
T++++ +L D G Y C+ +T P + +LN+ V++K I G L K G D +
Sbjct: 93 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 152
Query: 93 TCVVLETPD--PPSFIYW 108
+ + PPS + W
Sbjct: 153 LVATCTSANGKPPSVVSW 170
>pdb|1G7M|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92v)
Length = 107
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 35 EWTLKIASSQLRDSGTYECQ--VSTEPKISIGYKLNV 69
+++LKI S Q D G+Y CQ VST G KL +
Sbjct: 70 QYSLKINSLQPEDFGSYYCQHFVSTPRTFGGGTKLEI 106
>pdb|1A4J|L Chain L, Diels Alder Catalytic Antibody Germline Precursor
pdb|1A4J|A Chain A, Diels Alder Catalytic Antibody Germline Precursor
Length = 217
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNVVISKAK----IIGNSELYIKSGS 88
++TLKI+ + D G Y C ST P G KL + + A I S+ +KSG+
Sbjct: 75 DFTLKISRVEAEDLGVYFCSQSTHVPPTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGT 134
Query: 89 DINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSG 147
++ C++ + + W V N Q G VTE+ ++ S +S +T
Sbjct: 135 -ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKA 189
Query: 148 NY 149
+Y
Sbjct: 190 DY 191
>pdb|2COQ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 108
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKIS--IGYK 66
R++ +GS+ +L I ++ DSGTY+C+ + +GYK
Sbjct: 54 RYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYRRCAFNTGVGYK 98
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNV-VISKAK--IIGNSE-LYIKSGSDINL 92
T++++ +L D G Y C+ +T P + +LN+ V++K I G L K G D +
Sbjct: 79 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 138
Query: 93 TCVVLETPD--PPSFIYW 108
+ + PPS + W
Sbjct: 139 LVATCTSANGKPPSVVSW 156
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 38 LKIASSQLRDSGTYECQVSTE-----------PKISIGYKLNVVISKAKIIGNSELYIKS 86
L IA+ + D G Y C VS+ P I I + ++ ++Y
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127
Query: 87 GSDINLTCVVLETPDP 102
G ++ L C L P P
Sbjct: 128 GQNVTLECFALGNPVP 143
>pdb|2UV3|A Chain A, Structure Of The Signal-Regulatory Protein (Sirp) Alpha
Domain That Binds Cd47.
pdb|2UV3|B Chain B, Structure Of The Signal-Regulatory Protein (Sirp) Alpha
Domain That Binds Cd47.
pdb|2JJS|A Chain A, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (sirp) Alpha
pdb|2JJS|B Chain B, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (sirp) Alpha
pdb|2JJT|A Chain A, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (Sirp) Alpha
pdb|2JJT|B Chain B, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (Sirp) Alpha
Length = 126
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVN---YSQRGG-------ISVVTEKQTRT 133
+ +G L C V P I W+RGA Y+Q+ G +S T+++
Sbjct: 15 VAAGESAILHCTVTSL-IPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMD 73
Query: 134 SRLVISKAVTSDSGNYTC 151
+ IS +D+G Y C
Sbjct: 74 FSISISNITPADAGTYYC 91
>pdb|3IF1|A Chain A, Crystal Structure Of 237mab In Complex With A Galnac
pdb|3IF1|C Chain C, Crystal Structure Of 237mab In Complex With A Galnac
Length = 215
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69
++TLKI+S + D G Y C ST P G KL +
Sbjct: 74 DFTLKISSVEAEDLGVYFCSQSTHVPTFGGGTKLEI 109
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNV-VISKAK--IIGNSE-LYIKSGSDINL 92
T++++ +L D G Y C+ +T P + +LN+ V++K I G L K G D +
Sbjct: 78 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 137
Query: 93 TCVVLETPD--PPSFIYW 108
+ + PPS + W
Sbjct: 138 LVATCTSANGKPPSVVSW 155
>pdb|3IET|A Chain A, Crystal Structure Of 237mab With Antigen
pdb|3IET|C Chain C, Crystal Structure Of 237mab With Antigen
Length = 217
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69
++TLKI+S + D G Y C ST P G KL +
Sbjct: 75 DFTLKISSVEAEDLGVYFCSQSTHVPTFGGGTKLEI 110
>pdb|1I9R|L Chain L, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
pdb|1I9R|M Chain M, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
pdb|1I9R|Y Chain Y, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
Length = 218
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNVVISKAK----IIGNSELYIKSGS 88
++TL I+S + D TY CQ S E P G KL + + A I S+ +KSG+
Sbjct: 74 DFTLTISSVEPEDFATYYCQHSWEIPPTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGT 133
Query: 89 DINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSG 147
++ C++ + + W V N Q G VTE+ ++ S +S +T
Sbjct: 134 -ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKA 188
Query: 148 NY 149
+Y
Sbjct: 189 DY 190
>pdb|2D9C|A Chain A, Solution Structure Of The First Ig-Like Domain Of Signal-
Regulatory Protein Beta-1 (Sirp-Beta-1)
Length = 136
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANV---VNYSQRGG-------ISVVTEKQTRT 133
+ +G L C + P I W+RGA + Y+Q+ G +S +T++
Sbjct: 20 VAAGESATLRCAMTSL-IPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLD 78
Query: 134 SRLVISKAVTSDSGNYTC 151
+ IS +D+G Y C
Sbjct: 79 FSISISNITPADAGTYYC 96
>pdb|4DFI|A Chain A, Crystal Structure Of Cell Adhesion Molecule Nectin-2CD112
MUTANT FAMP
Length = 128
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 103 PSFIYWYRGANVVNY-SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASV 161
PSF G+ +++ S + TE + + + L + D GNYTC S+S SV
Sbjct: 61 PSFSSPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFSTSPKGSV 120
>pdb|1RZI|B Chain B, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|D Chain D, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|F Chain F, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|H Chain H, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|J Chain J, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|L Chain L, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|N Chain N, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|P Chain P, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
Length = 230
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 115 VNYSQR--GGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
NY+Q+ G +++ ++ T T+ + +S + D+ Y CA DG
Sbjct: 58 ANYAQKFQGRVTITADEATSTTYMELSSLRSEDTAVYFCAKGGEDG 103
>pdb|3OJD|A Chain A, Anti-Indolicidin Monoclonal Antibody V2d2 (Fab Fragment)
Length = 214
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
+++LKI S Q D G+Y CQ + G N+ I +A
Sbjct: 70 QYSLKINSLQPEDFGSYYCQHFWSTPFTFGTGTNLEIKRA 109
>pdb|1F58|L Chain L, Igg1 Fab Fragment (58.2) Complex With 24-Residue Peptide
(Residues 308-333 Of Hiv-1 Gp120 (Mn Isolate) With Ala
To Aib Substitution At Position 323
pdb|2F58|L Chain L, Igg1 Fab Fragment (58.2) Complex With 12-Residue Cyclic
Peptide (Including Residues 315-324 Of Hiv-1 Gp120) (Mn
Isolate)
Length = 216
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
++TL I + D+ TY CQ S E ++ G + + +A
Sbjct: 74 DFTLNIHPVEEEDAATYYCQQSHEDPLTFGAGTKLELKRA 113
>pdb|3F58|L Chain L, Igg1 Fab Fragment (58.2) Complex With 12-Residue Cyclic
Peptide (Including Residues 315-324 Of Hiv-1 Gp120 (Mn
Isolate); H315s Mutation
Length = 215
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
++TL I + D+ TY CQ S E ++ G + + +A
Sbjct: 74 DFTLNIHPVEEEDAATYYCQQSHEDPLTFGAGTKLELKRA 113
>pdb|3S4S|G Chain G, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S4S|H Chain H, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 191
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
TL ++ +L+DSGT+ C V K + +K+++V+
Sbjct: 147 TLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 180
>pdb|3S5L|G Chain G, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|H Chain H, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 191
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
TL ++ +L+DSGT+ C V K + +K+++V+
Sbjct: 147 TLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 180
>pdb|3HUJ|E Chain E, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3HUJ|G Chain G, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3VWJ|C Chain C, Ternary Crystal Structure Of The Human Nkt
Tcr-Cd1d-C20:2 Complex
pdb|3VWK|C Chain C, Ternary Crystal Structure Of The Human Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide Complex
Length = 209
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 9 LHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
L I+T T +N R+T+ + + +L I +SQL DS +Y C VS
Sbjct: 48 LTIMTFSENTKSNG-RYTATLDADTKQSSLHITASQLSDSASYICVVS 94
>pdb|1OSP|H Chain H, Crystal Structure Of Outer Surface Protein A Of Borrelia
Burgdorferi Complexed With A Murine Monoclonal Antibody
Fab
Length = 218
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 16/85 (18%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYW----------------YRGANVVNYSQRGGISVVT 127
+K ++LTC V P F W Y G N S + IS+
Sbjct: 12 VKPSQTLSLTCSVTGEPITSGFWDWIRKFPGNKLEFMGYIRYGGGTYYNPSLKSPISITR 71
Query: 128 EKQTRTSRLVISKAVTSDSGNYTCA 152
+ L ++ VT D+ Y CA
Sbjct: 72 DTSKNHYYLQLNSVVTEDTATYYCA 96
>pdb|3TYF|A Chain A, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TYF|C Chain C, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TZV|A Chain A, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
pdb|3TZV|G Chain G, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
Length = 213
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 9 LHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
L I+T T +N R+T+ + + +L I +SQL DS +Y C VS
Sbjct: 49 LTIMTFSENTKSNG-RYTATLDADTKQSSLHITASQLSDSASYICVVS 95
>pdb|2QQN|L Chain L, Neuropilin-1 B1 Domain In Complex With A Vegf-Blocking Fab
Length = 214
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 35 EWTLKIASSQLRDSGTYECQ--VSTEPKISIGYKLNVVISKAK----IIGNSELYIKSGS 88
++TL I+S Q D TY CQ + + P G K+ + + A I S+ +KSG+
Sbjct: 70 DFTLTISSLQPEDFATYYCQQYLGSPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGT 129
Query: 89 DINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSG 147
++ C++ + + W V N Q G VTE+ ++ S +S +T
Sbjct: 130 -ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKA 184
Query: 148 NY 149
+Y
Sbjct: 185 DY 186
>pdb|4ELK|B Chain B, Crystal Structure Of The Hy19.3 Type Ii Nkt Tcr
pdb|4ELK|D Chain D, Crystal Structure Of The Hy19.3 Type Ii Nkt Tcr
pdb|4ELM|F Chain F, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
pdb|4ELM|H Chain H, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
Length = 244
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS-----TEPKISIGYKL-------NVVI 71
+F+ DGS +TLKI + L DS Y C S E G +L NV
Sbjct: 65 QFSVERPDGS-YFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLRNVTP 123
Query: 72 SKAKIIGNSELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANV 114
K + S+ I L C+ PD +W G V
Sbjct: 124 PKVSLFEPSKAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVN---YSQRGG-------ISV 125
I + + + +G L C V P I W+RGA Y+Q+ G +S
Sbjct: 7 IQPDKSVSVAAGESAILHCTVTSL-IPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSE 65
Query: 126 VTEKQTRTSRLVISKAVTSDSGNYTC 151
T+++ + IS +D+G Y C
Sbjct: 66 STKRENMDFSISISNITPADAGTYYC 91
>pdb|2PO6|C Chain C, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|2PO6|G Chain G, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|3SDX|E Chain E, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDX|G Chain G, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
Length = 204
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 9 LHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
L I+T T +N R+T+ + + +L I +SQL DS +Y C VS
Sbjct: 46 LTIMTFSENTKSNG-RYTATLDADTKQSSLHITASQLSDSASYICVVS 92
>pdb|1CDY|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With
Gly 47 Replaced By Ser
Length = 178
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
TL ++ +L+DSGT+ C V K + +K+++V+
Sbjct: 143 TLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 176
>pdb|3QPX|L Chain L, Crystal Structure Of Fab C2507
Length = 213
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 16 ILTYTNDLRFTSLHS----DGS-DEWTLKIASSQLRDSGTYEC-QVSTEPKISIGYKLN- 68
+L Y D T + S DGS ++TL I+S Q D TY C Q ++ G KL+
Sbjct: 46 LLIYYTDRLQTGIPSRFSGDGSGSDYTLTISSLQPEDVATYFCQQYNSRDTFGAGTKLDL 105
Query: 69 ---VVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-IS 124
V I S+ +KSG+ ++ C++ + + W V N Q G
Sbjct: 106 KRTVAAPSVFIFPPSDEQLKSGT-ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQE 160
Query: 125 VVTEKQTRTSRLVISKAVTSDSGNY 149
VTE+ ++ S +S +T +Y
Sbjct: 161 SVTEQDSKDSTYSLSSTLTLSKADY 185
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNV-VISKAK--IIGNSE-LYIKSGSDINL 92
T++++ +L D G Y C+ +T P + +LN+ V++K I G L K G D +
Sbjct: 78 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 137
Query: 93 TCVVLETPD--PPSFIYW 108
+ + PPS + W
Sbjct: 138 LVATCTSANGKPPSVVSW 155
>pdb|2EYR|A Chain A, A Structural Basis For Selection And Cross-species
Reactivity Of The Semi-invariant Nkt Cell Receptor In
Cd1d/glycolipid Recognition
pdb|2EYS|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|C Chain C, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
Length = 210
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 9 LHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
L I+T T +N R+T+ + + +L I +SQL DS +Y C VS
Sbjct: 49 LTIMTFSENTKSNG-RYTATLDADTKQSSLHITASQLSDSASYICVVS 95
>pdb|1CDI|A Chain A, Structures Of An Hiv And Mhc Binding Fragment From Human
Cd4 As Refined In Two Crystal Lattices
Length = 179
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
TL ++ +L+DSGT+ C V K + +K+++V+
Sbjct: 144 TLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 177
>pdb|3EO1|B Chain B, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|E Chain E, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|H Chain H, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|K Chain K, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
Length = 225
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 17/85 (20%)
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGA---------------NVVNYSQR--GGISVVT 127
K GS + ++C + I W R A ++ NY+QR G +++
Sbjct: 13 KPGSSVKVSCKASGYTFSSNVISWVRQAPGQGLEWMGGVIPIVDIANYAQRFKGRVTITA 72
Query: 128 EKQTRTSRLVISKAVTSDSGNYTCA 152
++ T T+ + +S + D+ Y CA
Sbjct: 73 DESTSTTYMELSSLRSEDTAVYYCA 97
>pdb|1JL4|D Chain D, Crystal Structure Of The Human Cd4 N-Terminal Two Domain
Fragment Complexed To A Class Ii Mhc Molecule
pdb|1CDH|A Chain A, Structures Of An Hiv And Mhc Binding Fragment From Human
Cd4 As Refined In Two Crystal Lattices
pdb|1CDJ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4
Length = 178
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
TL ++ +L+DSGT+ C V K + +K+++V+
Sbjct: 143 TLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 176
>pdb|1CDU|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With
Phe 43 Replaced By Val
Length = 178
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
TL ++ +L+DSGT+ C V K + +K+++V+
Sbjct: 143 TLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 176
>pdb|3O2D|A Chain A, Crystal Structure Of Hiv-1 Primary Receptor Cd4 In Complex
With A Potent Antiviral Antibody
Length = 188
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
TL ++ +L+DSGT+ C V K + +K+++V+
Sbjct: 143 TLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 176
>pdb|3CD4|A Chain A, Refinement And Analysis Of The First Two Domains Of Human
Cd4
Length = 182
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
TL ++ +L+DSGT+ C V K + +K+++V+
Sbjct: 143 TLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 176
>pdb|4FP8|H Chain H, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|I Chain I, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|J Chain J, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|K Chain K, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FQR|AA Chain a, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|CC Chain c, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|EE Chain e, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|GG Chain g, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|II Chain i, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|KK Chain k, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|MM Chain m, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|OO Chain o, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|QQ Chain q, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|SS Chain s, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|UU Chain u, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|WW Chain w, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
Length = 241
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 33/145 (22%)
Query: 1 VSWIRK---RDLHILTV-----GILTYTNDL--RFTSLHSDGSDEWTLKIASSQLRDSGT 50
VSW+R+ + L L++ G + Y + + RFT + + L++ + ++ D+G
Sbjct: 39 VSWVRQAPGKGLEWLSIINAGGGDIDYADSVEGRFTISRDNSKETLYLQMTNLRVEDTGV 98
Query: 51 YEC--QVSTEPKISIGYK---------------LNVVISKAKIIGNSELYIK------SG 87
Y C +S + +S G++ V +S A G S + SG
Sbjct: 99 YYCAKHMSMQQVVSAGWERADLVGDAFDVWGQGTMVTVSSASTKGPSVFPLAPSSKSTSG 158
Query: 88 SDINLTCVVLETPDPPSFIYWYRGA 112
L C+V + P + W GA
Sbjct: 159 GTAALGCLVKDYFPEPVTVSWNSGA 183
>pdb|4FNL|H Chain H, Crystal Structure Of Broadly Neutralizing Antibody C05
pdb|4FNL|I Chain I, Crystal Structure Of Broadly Neutralizing Antibody C05
Length = 247
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 33/145 (22%)
Query: 1 VSWIRK---RDLHILTV-----GILTYTNDL--RFTSLHSDGSDEWTLKIASSQLRDSGT 50
VSW+R+ + L L++ G + Y + + RFT + + L++ + ++ D+G
Sbjct: 39 VSWVRQAPGKGLEWLSIINAGGGDIDYADSVEGRFTISRDNSKETLYLQMTNLRVEDTGV 98
Query: 51 YEC--QVSTEPKISIGYK---------------LNVVISKAKIIGNSELYIK------SG 87
Y C +S + +S G++ V +S A G S + SG
Sbjct: 99 YYCAKHMSMQQVVSAGWERADLVGDAFDVWGQGTMVTVSSASTKGPSVFPLAPSSKSTSG 158
Query: 88 SDINLTCVVLETPDPPSFIYWYRGA 112
L C+V + P + W GA
Sbjct: 159 GTAALGCLVKDYFPEPVTVSWNSGA 183
>pdb|1GC1|C Chain C, Hiv-1 Gp120 Core Complexed With Cd4 And A Neutralizing
Human Antibody
pdb|1G9M|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1G9N|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZJ|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZK|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
Length = 185
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
TL ++ +L+DSGT+ C V K + +K+++V+
Sbjct: 143 TLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 176
>pdb|3LQA|C Chain C, Crystal Structure Of Clade C Gp120 In Complex With Scd4
And
Length = 192
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
TL ++ +L+DSGT+ C V K + +K+++V+
Sbjct: 143 TLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 176
>pdb|2NXY|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein(S334a) Complexed With
Cd4 And Antibody 17b
pdb|2NXZ|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (t257s, S334a, S375w)
Complexed With Cd4 And Antibody 17b
pdb|2NY0|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (M95w, W96c, T257s,
V275c, S334a, S375w, A433m) Complexed With Cd4 And
Antibody 17b
pdb|2NY1|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (I109c, T257s, S334a,
S375w, Q428c) Complexed With Cd4 And Antibody 17b
pdb|2NY2|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (T123c, T257s, S334a,
S375w, G431c) Complexed With Cd4 And Antibody 17b
pdb|2NY3|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E267c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY4|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E268c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY5|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T257s, V275c, S334a, S375w, Q428c, A433m) Complexed With
Cd4 And Antibody 17b
pdb|2NY6|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T123c, T257s, V275c,s334a, S375w, Q428c, G431c)
Complexed With Cd4 And Antibody 17b
pdb|3JWD|C Chain C, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWD|D Chain D, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWO|C Chain C, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
Length = 184
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
TL ++ +L+DSGT+ C V K + +K+++V+
Sbjct: 144 TLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 177
>pdb|2B4C|C Chain C, Crystal Structure Of Hiv-1 Jr-fl Gp120 Core Protein
Containing The Third Variable Region (v3) Complexed With
Cd4 And The X5 Antibody
pdb|2QAD|B Chain B, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
pdb|2QAD|F Chain F, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
Length = 181
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
TL ++ +L+DSGT+ C V K + +K+++V+
Sbjct: 143 TLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 176
>pdb|2ZCH|L Chain L, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 215
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
++TL I + D+ TY CQ S E + G + I +A
Sbjct: 74 DFTLNIQPVEEEDAATYYCQQSNEDPYTFGGGTKLEIKRA 113
>pdb|4DW2|H Chain H, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 212
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 11/123 (8%)
Query: 1 VSWIRKRD------LHILTVGILTYTNDL---RFTSLHSDGSDEWTLKIASSQLRDSGTY 51
+SW+R+ + +T G TY +D RF + + +L+++S + D+ Y
Sbjct: 34 MSWVRQTPEKRLEWVASITNGGSTYYSDSVKGRFIISRDNARNILSLQMSSLRSEDTAMY 93
Query: 52 ECQVS--TEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109
C+ T G V +S AK S + GS + L C+V P + W
Sbjct: 94 YCERGELTYAMDYWGQGTTVTVSSAKTTPPSVYPLAPGSMVTLGCLVKGYFPEPVTVTWN 153
Query: 110 RGA 112
G+
Sbjct: 154 SGS 156
>pdb|2ZCK|L Chain L, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|L Chain L, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 218
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
++TL I + D+ TY CQ S E + G + I +A
Sbjct: 74 DFTLNIQPVEEEDAATYYCQQSNEDPYTFGGGTKLEIKRA 113
>pdb|2ZNW|A Chain A, Crystal Structure Of Scfv10 In Complex With Hen Egg
Lysozyme
pdb|2ZNW|B Chain B, Crystal Structure Of Scfv10 In Complex With Hen Egg
Lysozyme
Length = 242
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 35/151 (23%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA---------------KIIGN 79
++TL I S + D G Y CQ S + G + I+ ++ +
Sbjct: 70 DFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQES 129
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYW------------------YRGANVVNYSQRG 121
+K ++LTC V T D + YW Y G+ N S +
Sbjct: 130 GPSLVKPSQTLSLTCSV--TGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKS 187
Query: 122 GISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152
IS+ + L ++ T D+ Y CA
Sbjct: 188 RISITRDTSKNQYYLDLNSVTTEDTATYYCA 218
>pdb|2XRA|L Chain L, Crystal Structure Of The Hk20 Fab In Complex With A Gp41
Mimetic 5-Helix
Length = 215
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGY------KLNVVISKAKIIGNSELYIKSG 87
++T I+S Q D TY CQ + P+I+ G K V I S+ +KSG
Sbjct: 70 DFTFTISSLQPEDLATYYCQHYDDLPRITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSG 129
Query: 88 SDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDS 146
+ ++ C++ + + W V N Q G VTE+ ++ S +S +T
Sbjct: 130 T-ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSK 184
Query: 147 GNY 149
+Y
Sbjct: 185 ADY 187
>pdb|2CDE|A Chain A, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|C Chain C, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|E Chain E, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
Length = 192
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 9 LHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
L I+T T +N R+T+ + + +L I +SQL DS +Y C VS
Sbjct: 46 LTIMTFSENTKSNG-RYTATLDADTKQSSLHITASQLSDSASYICVVS 92
>pdb|1GGB|L Chain L, Major Antigen-Induced Domain Rearrangements In An Antibody
pdb|1GGC|L Chain L, Major Antigen-Induced Domain Rearrangements In An Antibody
Length = 215
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
++TL I + D TY CQ S E ++ G + I +A
Sbjct: 74 DFTLTINPVEADDVATYYCQQSNEDPLTFGAGTKLEIKRA 113
>pdb|3QPQ|L Chain L, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|E Chain E, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|C Chain C, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|I Chain I, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3ULU|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 215
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 30 SDGSDEWTLKIASSQLRDSGTYECQV--STEPKISIGYKLN-----VVISKAKIIGNSEL 82
S+ +++LKI S Q D G+Y CQ ST G KL V I S+
Sbjct: 65 SESGTQYSLKINSLQPEDFGSYYCQHFWSTPFTFGSGTKLELKRGTVAAPSVFIFPPSDE 124
Query: 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKA 141
+KSG+ ++ C++ + + W V N Q G VTE+ ++ S +S
Sbjct: 125 QLKSGT-ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSST 179
Query: 142 VTSDSGNY 149
+T +Y
Sbjct: 180 LTLSKADY 187
>pdb|3EO0|B Chain B, Structure Of The Transforming Growth Factor-Beta
Neutralizing Antibody Gc-1008
pdb|3EO0|D Chain D, Structure Of The Transforming Growth Factor-Beta
Neutralizing Antibody Gc-1008
Length = 225
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 17/85 (20%)
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGA---------------NVVNYSQR--GGISVVT 127
K GS + ++C + I W R A ++ NY+QR G +++
Sbjct: 13 KPGSSVKVSCKASGYTFSSNVISWVRQAPGQGLEWMGGVIPIVDIANYAQRFKGRVTITA 72
Query: 128 EKQTRTSRLVISKAVTSDSGNYTCA 152
++ T T+ + +S + D+ Y CA
Sbjct: 73 DESTSTTYMELSSLRSEDTAVYYCA 97
>pdb|1GGI|L Chain L, Crystal Structure Of An Hiv-1 Neutralizing Antibody 50.1
In Complex With Its V3 Loop Peptide Antigen
pdb|1GGI|M Chain M, Crystal Structure Of An Hiv-1 Neutralizing Antibody 50.1
In Complex With Its V3 Loop Peptide Antigen
Length = 218
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
++TL I + D TY CQ S E ++ G + I +A
Sbjct: 74 DFTLTINPVEADDVATYYCQQSNEDPLTFGAGTKLEIKRA 113
>pdb|3I2C|L Chain L, Crystal Structure Of Anti-Il-23 Antibody Cnto4088
Length = 218
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
++TL I + D+ TY CQ S E + G + I +A
Sbjct: 74 DFTLNIHPVEAEDAATYYCQHSGELPFTFGSGTKLEIKRA 113
>pdb|1F3R|B Chain B, Complex Between Fv Antibody Fragment And An Analogue Of
The Main Immunogenic Region Of The Acetylcholine
Receptor
Length = 257
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 35 EWTLKIASSQLRDSGTYEC-QVSTEPKISIGYKLNVVISKAKIIGNSEL 82
++TL I+S Q D TY C Q + G KL + ++ K+I +L
Sbjct: 208 DYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKAAEQKLISEEDL 256
>pdb|1QKZ|L Chain L, Fab Fragment (Mn14c11.6) In Complex With A Peptide Antigen
Derived From Neisseria Meningitidis P1.7 Serosubtype
Antigen And Domain Ii From Streptococcal Protein G
Length = 217
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 16 ILTYTNDLRFTSLH-----SDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69
+L YT RF+ + S ++TLKI+ + D G Y C ST P G KL +
Sbjct: 51 LLIYTVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHFPTFGGGTKLEI 110
>pdb|1AD9|L Chain L, Igg-Fab Fragment Of Engineered Human Monoclonal Antibody
Ctm01
pdb|1AD9|A Chain A, Igg-Fab Fragment Of Engineered Human Monoclonal Antibody
Ctm01
Length = 219
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGY------KLNVVISKAKIIGNSELYIKSGS 88
E+TL I+S Q D TY C E + G K V I S+ +KSG+
Sbjct: 75 EFTLTISSLQPDDFATYYCMQHLEYPFTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGT 134
Query: 89 DINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSG 147
++ C++ + + W V N Q G VTE+ ++ S +S +T
Sbjct: 135 -ASVVCLLNNFYPREAKVQW----KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKA 189
Query: 148 NY 149
+Y
Sbjct: 190 DY 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,045,058
Number of Sequences: 62578
Number of extensions: 230367
Number of successful extensions: 1678
Number of sequences better than 100.0: 490
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 402
Number of HSP's that attempted gapping in prelim test: 1462
Number of HSP's gapped (non-prelim): 606
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)