Query psy3475
Match_columns 207
No_of_seqs 125 out of 1187
Neff 11.0
Searched_HMMs 46136
Date Fri Aug 16 17:38:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.8 9.5E-19 2.1E-23 144.6 19.1 124 37-168 295-423 (1051)
2 KOG3513|consensus 99.8 2E-18 4.3E-23 142.7 16.9 148 20-173 468-619 (1051)
3 PHA02826 IL-1 receptor-like pr 99.7 4.7E-17 1E-21 116.8 13.4 108 35-156 97-210 (227)
4 KOG4194|consensus 99.7 5.2E-17 1.1E-21 126.9 10.8 132 35-172 573-710 (873)
5 PHA02785 IL-beta-binding prote 99.7 9.1E-16 2E-20 116.6 17.1 123 37-159 178-317 (326)
6 KOG4221|consensus 99.7 9.5E-15 2.1E-19 121.6 16.6 136 22-170 184-330 (1381)
7 cd05771 IgC_Tapasin_R Tapasin- 99.6 2.1E-14 4.5E-19 96.2 14.2 120 37-156 2-130 (139)
8 cd05762 Ig8_MLCK Eighth immuno 99.6 7.6E-15 1.6E-19 92.1 10.6 93 74-172 2-97 (98)
9 PHA02785 IL-beta-binding prote 99.6 4.8E-14 1E-18 107.2 16.9 110 37-157 83-200 (326)
10 KOG4194|consensus 99.6 1.1E-13 2.4E-18 108.6 14.8 122 23-156 660-783 (873)
11 cd05851 Ig3_Contactin-1 Third 99.5 2.1E-13 4.5E-18 84.0 7.9 78 72-159 1-78 (88)
12 KOG4221|consensus 99.5 1.8E-13 3.8E-18 114.2 9.8 120 23-156 283-403 (1381)
13 KOG4222|consensus 99.5 3.5E-13 7.6E-18 111.9 11.3 126 37-171 188-318 (1281)
14 cd05737 Ig_Myomesin_like_C C-t 99.5 1.2E-12 2.6E-17 81.3 11.1 76 79-159 8-83 (92)
15 cd05853 Ig6_Contactin-4 Sixth 99.5 4.6E-13 9.9E-18 81.2 8.8 79 88-167 1-83 (85)
16 cd05735 Ig8_DSCAM Eight immuno 99.5 2E-12 4.4E-17 79.5 10.7 80 87-169 1-85 (88)
17 cd05747 Ig5_Titin_like M5, fif 99.5 2.4E-12 5.2E-17 80.0 11.1 82 72-159 3-84 (92)
18 cd05854 Ig6_Contactin-2 Sixth 99.4 2.1E-12 4.5E-17 78.9 10.1 78 88-166 1-82 (85)
19 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 2.1E-12 4.6E-17 79.0 10.0 74 81-159 4-77 (86)
20 PF07679 I-set: Immunoglobulin 99.4 2.8E-12 6E-17 79.3 10.3 78 74-157 2-79 (90)
21 cd04975 Ig4_SCFR_like Fourth i 99.4 2.9E-12 6.4E-17 80.6 9.8 76 80-158 11-89 (101)
22 cd05752 Ig1_FcgammaR_like Frst 99.4 4.6E-12 1E-16 75.9 9.7 72 76-163 4-76 (78)
23 cd05745 Ig3_Peroxidasin Third 99.4 1E-12 2.2E-17 78.2 6.6 65 86-159 1-65 (74)
24 cd05758 Ig5_KIRREL3-like Fifth 99.4 1.7E-11 3.6E-16 77.1 12.0 83 76-159 5-90 (98)
25 cd05891 Ig_M-protein_C C-termi 99.4 8.2E-12 1.8E-16 77.5 10.5 75 79-158 8-82 (92)
26 cd04970 Ig6_Contactin_like Six 99.4 6E-12 1.3E-16 77.0 9.7 78 88-166 1-82 (85)
27 cd05898 Ig5_KIRREL3 Fifth immu 99.4 1.8E-11 3.9E-16 76.2 11.6 87 75-162 4-93 (98)
28 cd05852 Ig5_Contactin-1 Fifth 99.4 2.3E-12 4.9E-17 76.3 6.8 64 87-159 1-64 (73)
29 cd05868 Ig4_NrCAM Fourth immun 99.4 4.6E-12 1E-16 75.7 8.1 66 87-159 1-66 (76)
30 cd05730 Ig3_NCAM-1_like Third 99.4 7.3E-12 1.6E-16 78.3 9.4 72 81-159 12-83 (95)
31 cd04968 Ig3_Contactin_like Thi 99.4 5.2E-12 1.1E-16 77.8 8.6 76 74-159 3-78 (88)
32 cd05870 Ig5_NCAM-2 Fifth immun 99.4 1.7E-11 3.7E-16 77.0 11.1 79 77-159 6-89 (98)
33 cd05863 Ig2_VEGFR-3 Second imm 99.4 2.6E-12 5.7E-17 74.4 6.7 55 90-158 1-55 (67)
34 cd05869 Ig5_NCAM-1 Fifth immun 99.4 1.7E-11 3.6E-16 76.9 10.8 82 75-160 5-89 (97)
35 cd04972 Ig_TrkABC_d4 Fourth do 99.4 2.6E-11 5.6E-16 75.0 11.5 76 78-159 6-81 (90)
36 cd07693 Ig1_Robo First immunog 99.4 1.4E-11 3.1E-16 77.6 10.4 83 73-159 2-89 (100)
37 cd05892 Ig_Myotilin_C C-termin 99.4 1.8E-11 3.9E-16 72.7 10.0 67 90-160 1-67 (75)
38 cd05867 Ig4_L1-CAM_like Fourth 99.4 8.7E-12 1.9E-16 74.6 8.7 65 87-159 1-66 (76)
39 cd05728 Ig4_Contactin-2-like F 99.4 5.5E-12 1.2E-16 77.1 7.6 73 77-159 4-76 (85)
40 cd05865 Ig1_NCAM-1 First immun 99.3 1.6E-11 3.5E-16 76.6 9.7 76 78-157 6-83 (96)
41 cd05859 Ig4_PDGFR-alpha Fourth 99.3 9.9E-12 2.1E-16 78.3 8.5 77 81-159 12-90 (101)
42 cd05732 Ig5_NCAM-1_like Fifth 99.3 2.1E-11 4.5E-16 76.4 9.9 78 78-159 7-87 (96)
43 cd05848 Ig1_Contactin-5 First 99.3 3.4E-11 7.3E-16 75.0 10.1 77 75-159 4-84 (94)
44 cd05743 Ig_Perlecan_D2_like Im 99.3 2.5E-11 5.4E-16 72.9 9.0 66 87-158 1-66 (78)
45 cd04978 Ig4_L1-NrCAM_like Four 99.3 1.6E-11 3.5E-16 73.4 7.6 66 87-159 1-66 (76)
46 cd05773 Ig8_hNephrin_like Eigh 99.3 4.3E-11 9.4E-16 76.6 10.0 71 86-159 22-95 (109)
47 cd05893 Ig_Palladin_C C-termin 99.3 2.4E-11 5.3E-16 72.2 7.9 67 90-160 1-67 (75)
48 cd05855 Ig_TrkB_d5 Fifth domai 99.3 5E-11 1.1E-15 71.2 9.2 65 92-158 3-68 (79)
49 cd05850 Ig1_Contactin-2 First 99.3 1.2E-10 2.7E-15 72.5 11.2 77 76-160 5-85 (94)
50 cd05864 Ig2_VEGFR-2 Second imm 99.3 1.3E-11 2.9E-16 72.2 6.3 58 90-158 1-58 (70)
51 cd05858 Ig3_FGFR-2 Third immun 99.3 5.2E-11 1.1E-15 73.6 9.2 69 87-157 1-78 (90)
52 cd04977 Ig1_NCAM-1_like First 99.3 1.6E-10 3.5E-15 71.6 11.3 73 78-156 6-79 (92)
53 cd05760 Ig2_PTK7 Second immuno 99.3 5.5E-11 1.2E-15 71.2 8.9 62 90-158 1-62 (77)
54 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 4.2E-11 9.1E-16 71.2 8.3 63 90-159 1-63 (74)
55 cd04969 Ig5_Contactin_like Fif 99.3 2.2E-11 4.8E-16 72.2 7.1 64 87-159 1-64 (73)
56 cd05748 Ig_Titin_like Immunogl 99.3 3.1E-11 6.7E-16 71.8 7.7 65 89-159 1-65 (74)
57 cd04973 Ig1_FGFR First immunog 99.3 3.9E-11 8.4E-16 72.3 8.1 68 80-158 2-69 (79)
58 cd05857 Ig2_FGFR Second immuno 99.3 4E-11 8.7E-16 73.3 8.3 71 83-159 5-76 (85)
59 cd05723 Ig4_Neogenin Fourth im 99.3 2.6E-11 5.6E-16 71.5 7.2 62 89-159 1-62 (71)
60 cd05740 Ig_CEACAM_D4 Fourth im 99.3 2.5E-11 5.5E-16 75.0 7.4 71 79-159 10-80 (91)
61 cd05724 Ig2_Robo Second immuno 99.3 6.4E-11 1.4E-15 72.5 9.0 73 79-159 3-76 (86)
62 cd05746 Ig4_Peroxidasin Fourth 99.3 2.9E-11 6.3E-16 70.9 7.1 62 90-160 1-62 (69)
63 cd05744 Ig_Myotilin_C_like Imm 99.3 4.7E-11 1E-15 71.1 8.0 66 90-159 1-66 (75)
64 cd05866 Ig1_NCAM-2 First immun 99.3 3E-10 6.5E-15 70.2 11.8 76 77-159 5-81 (92)
65 cd04974 Ig3_FGFR Third immunog 99.3 1.1E-10 2.3E-15 72.2 9.8 69 87-157 1-78 (90)
66 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 1.1E-10 2.4E-15 70.4 9.5 67 91-159 2-71 (81)
67 cd05726 Ig4_Robo Fhird immunog 99.3 6.5E-11 1.4E-15 73.2 8.5 74 87-167 1-83 (90)
68 cd05722 Ig1_Neogenin First imm 99.2 2.1E-10 4.6E-15 71.6 10.7 76 77-159 4-85 (95)
69 cd04976 Ig2_VEGFR Second immun 99.2 3.7E-11 8E-16 70.8 6.1 59 90-158 1-59 (71)
70 cd05763 Ig_1 Subgroup of the i 99.2 6.4E-11 1.4E-15 70.6 7.0 63 90-158 1-64 (75)
71 KOG4222|consensus 99.2 1E-10 2.2E-15 97.7 10.0 124 22-156 268-398 (1281)
72 cd05749 Ig2_Tyro3_like Second 99.2 1.8E-10 4E-15 69.4 8.6 69 78-159 4-72 (81)
73 cd05856 Ig2_FGFRL1-like Second 99.2 1.4E-10 3.1E-15 70.3 8.2 68 83-158 5-72 (82)
74 cd05876 Ig3_L1-CAM Third immun 99.2 8.5E-11 1.8E-15 69.3 6.6 61 90-159 1-61 (71)
75 cd05736 Ig2_Follistatin_like S 99.2 2.9E-10 6.3E-15 67.9 8.9 63 90-158 1-63 (76)
76 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 2.9E-10 6.3E-15 69.2 8.8 68 87-156 1-68 (84)
77 cd05849 Ig1_Contactin-1 First 99.2 1.7E-10 3.6E-15 71.6 7.6 63 87-158 19-82 (93)
78 cd05756 Ig1_IL1R_like First im 99.2 8.8E-11 1.9E-15 73.0 6.3 72 81-158 8-84 (94)
79 cd05764 Ig_2 Subgroup of the i 99.2 1.9E-10 4E-15 68.4 7.5 63 87-158 1-64 (74)
80 cd07702 Ig2_VEGFR-1 Second imm 99.2 6.5E-11 1.4E-15 69.5 5.3 58 90-156 1-58 (72)
81 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 4.6E-10 1E-14 65.6 8.9 61 87-159 1-61 (69)
82 cd05895 Ig_Pro_neuregulin-1 Im 99.2 4.1E-10 8.8E-15 67.3 8.6 68 90-159 1-69 (76)
83 cd05753 Ig2_FcgammaR_like Seco 99.2 2.8E-10 6E-15 69.1 7.9 63 81-156 8-70 (83)
84 cd04967 Ig1_Contactin First Ig 99.2 1E-09 2.3E-14 67.9 10.5 64 87-158 19-83 (91)
85 cd05731 Ig3_L1-CAM_like Third 99.1 1.3E-10 2.8E-15 68.5 5.7 61 90-159 1-61 (71)
86 cd05750 Ig_Pro_neuregulin Immu 99.1 5.1E-10 1.1E-14 66.6 8.3 66 90-159 1-68 (75)
87 cd05733 Ig6_L1-CAM_like Sixth 99.1 3.7E-10 8.1E-15 67.6 7.5 64 90-159 1-68 (77)
88 cd05882 Ig1_Necl-1 First (N-te 99.1 1.8E-09 3.8E-14 67.2 10.5 74 80-156 5-84 (95)
89 cd05875 Ig6_hNeurofascin_like 99.1 1.2E-09 2.5E-14 65.4 9.1 64 90-159 1-68 (77)
90 cd07701 Ig1_Necl-3 First (N-te 99.1 2.1E-09 4.6E-14 66.9 10.3 75 79-156 4-84 (95)
91 cd05725 Ig3_Robo Third immunog 99.1 8.1E-10 1.8E-14 64.7 7.9 60 90-159 1-60 (69)
92 PHA03376 BARF1; Provisional 99.1 1.4E-08 3E-13 69.1 14.6 107 1-111 46-161 (221)
93 cd05742 Ig1_VEGFR_like First i 99.1 4.2E-10 9.1E-15 68.6 6.6 72 87-158 1-73 (84)
94 cd05874 Ig6_NrCAM Sixth immuno 99.1 1.2E-09 2.7E-14 65.3 8.5 64 90-159 1-68 (77)
95 cd05873 Ig_Sema4D_like Immunog 99.1 4.2E-10 9.2E-15 68.5 6.1 68 79-156 3-70 (87)
96 cd04979 Ig_Semaphorin_C Immuno 99.1 1.3E-09 2.9E-14 67.1 7.6 69 79-156 3-73 (89)
97 cd05754 Ig3_Perlecan_like Thir 99.1 1.6E-09 3.5E-14 66.2 7.9 70 78-159 7-77 (85)
98 cd05765 Ig_3 Subgroup of the i 99.1 1.1E-09 2.5E-14 66.1 7.2 66 87-159 1-72 (81)
99 cd05734 Ig7_DSCAM Seventh immu 99.0 1.3E-09 2.8E-14 65.6 7.3 62 90-158 1-68 (79)
100 cd05729 Ig2_FGFR_like Second i 99.0 7.2E-09 1.6E-13 63.1 9.5 71 83-158 5-75 (85)
101 cd07690 Ig1_CD4 First immunogl 99.0 3.2E-09 6.9E-14 65.7 7.5 72 83-156 3-87 (94)
102 cd05862 Ig1_VEGFR First immuno 99.0 8.3E-09 1.8E-13 63.1 9.3 69 87-156 1-72 (86)
103 cd05892 Ig_Myotilin_C C-termin 99.0 3.6E-09 7.7E-14 62.8 6.7 60 1-69 15-75 (75)
104 cd05853 Ig6_Contactin-4 Sixth 99.0 2.7E-09 5.9E-14 64.7 6.1 38 36-73 47-85 (85)
105 cd05717 Ig1_Necl-1-3_like Firs 99.0 3.3E-08 7.1E-13 61.6 11.3 76 79-157 4-85 (95)
106 cd05727 Ig2_Contactin-2-like S 98.9 6.7E-09 1.5E-13 64.2 6.6 70 80-156 11-82 (96)
107 cd05854 Ig6_Contactin-2 Sixth 98.9 1E-08 2.2E-13 62.5 7.3 38 36-73 47-85 (85)
108 cd05888 Ig1_Nectin-4_like Frst 98.9 2.6E-08 5.6E-13 62.7 9.3 69 1-69 20-99 (100)
109 smart00408 IGc2 Immunoglobulin 98.9 1.4E-08 2.9E-13 57.8 7.3 61 86-156 1-61 (63)
110 cd05845 Ig2_L1-CAM_like Second 98.9 1.1E-08 2.3E-13 63.2 7.1 71 79-157 10-82 (95)
111 cd05757 Ig2_IL1R_like Second i 98.9 5E-09 1.1E-13 64.7 5.6 67 82-156 5-74 (92)
112 PF00047 ig: Immunoglobulin do 98.9 7.4E-09 1.6E-13 59.5 5.7 63 87-153 1-64 (64)
113 cd05879 Ig_P0 Immunoglobulin ( 98.9 8.2E-08 1.8E-12 61.9 10.9 79 78-156 4-102 (116)
114 cd05870 Ig5_NCAM-2 Fifth immun 98.9 1.3E-08 2.7E-13 63.9 6.9 65 1-69 33-98 (98)
115 cd04983 IgV_TCR_alpha_like Imm 98.9 2.2E-08 4.7E-13 64.1 8.1 58 1-58 30-92 (109)
116 PF13895 Ig_2: Immunoglobulin 98.9 3.2E-08 6.9E-13 59.4 8.4 59 82-156 9-67 (80)
117 cd05763 Ig_1 Subgroup of the i 98.9 2E-08 4.3E-13 59.7 7.2 59 1-69 15-74 (75)
118 cd05852 Ig5_Contactin-1 Fifth 98.9 1E-08 2.2E-13 60.6 5.9 55 1-69 18-73 (73)
119 cd05893 Ig_Palladin_C C-termin 98.8 1.6E-08 3.5E-13 60.0 6.3 60 1-69 15-75 (75)
120 cd05871 Ig_Semaphorin_classIII 98.8 3.9E-08 8.4E-13 60.7 8.0 66 82-156 6-75 (91)
121 cd05715 Ig_P0-like Immunoglobu 98.8 3.9E-08 8.4E-13 63.7 8.2 59 1-59 34-103 (116)
122 cd05726 Ig4_Robo Fhird immunog 98.8 2.5E-08 5.4E-13 61.6 6.7 66 1-72 18-84 (90)
123 cd04984 IgV_L_lambda Immunoglo 98.8 3.5E-08 7.6E-13 61.9 7.5 55 1-57 25-84 (98)
124 cd05877 Ig_LP_like Immunoglobu 98.8 8.5E-08 1.9E-12 61.0 9.2 69 1-70 25-103 (106)
125 cd05881 Ig1_Necl-2 First (N-te 98.8 1.7E-07 3.7E-12 58.0 10.1 79 80-161 5-89 (95)
126 cd05744 Ig_Myotilin_C_like Imm 98.8 3.8E-08 8.3E-13 58.5 6.9 60 1-69 15-75 (75)
127 cd05881 Ig1_Necl-2 First (N-te 98.8 4.7E-08 1E-12 60.5 7.4 66 1-68 29-94 (95)
128 cd05880 Ig_EVA1 Immunoglobulin 98.8 5.7E-08 1.2E-12 62.7 8.2 38 23-60 66-103 (115)
129 cd07701 Ig1_Necl-3 First (N-te 98.8 3E-08 6.6E-13 61.7 6.4 48 21-69 48-95 (95)
130 smart00406 IGv Immunoglobulin 98.8 2.1E-08 4.5E-13 60.4 5.6 55 1-55 18-81 (81)
131 cd05762 Ig8_MLCK Eighth immuno 98.8 6.4E-08 1.4E-12 60.6 7.9 50 22-73 44-94 (98)
132 cd04970 Ig6_Contactin_like Six 98.8 3.5E-08 7.5E-13 60.2 6.5 39 35-73 46-85 (85)
133 cd04981 IgV_H Immunoglobulin ( 98.8 5.6E-08 1.2E-12 63.0 7.7 57 1-57 31-97 (117)
134 cd05725 Ig3_Robo Third immunog 98.8 4.5E-08 9.7E-13 57.2 6.6 54 1-69 15-69 (69)
135 cd05899 IgV_TCR_beta Immunoglo 98.8 3.1E-08 6.7E-13 63.5 6.3 56 1-57 29-93 (110)
136 cd05860 Ig4_SCFR Fourth immuno 98.8 2.9E-07 6.2E-12 57.2 10.2 84 80-164 11-96 (101)
137 cd05882 Ig1_Necl-1 First (N-te 98.7 7.9E-08 1.7E-12 59.8 7.7 65 1-67 29-93 (95)
138 cd05897 Ig2_IL1R2_like Second 98.7 2.7E-08 5.8E-13 61.6 5.4 69 83-156 6-77 (95)
139 cd05878 Ig_Aggrecan_like Immun 98.7 1.4E-07 3E-12 60.4 8.8 69 1-71 29-108 (110)
140 smart00410 IG_like Immunoglobu 98.7 5.1E-07 1.1E-11 54.4 11.0 70 81-156 3-73 (86)
141 smart00409 IG Immunoglobulin. 98.7 5.1E-07 1.1E-11 54.4 11.0 70 81-156 3-73 (86)
142 cd05735 Ig8_DSCAM Eight immuno 98.7 8.9E-08 1.9E-12 58.8 7.6 39 35-73 46-85 (88)
143 cd04982 IgV_TCR_gamma Immunogl 98.7 4.6E-08 1E-12 63.3 6.5 57 1-57 32-98 (116)
144 cd04983 IgV_TCR_alpha_like Imm 98.7 2E-07 4.4E-12 59.6 9.4 77 78-156 4-92 (109)
145 cd05734 Ig7_DSCAM Seventh immu 98.7 7.9E-08 1.7E-12 57.7 6.7 62 1-68 15-78 (79)
146 cd05716 Ig_pIgR Immunoglobulin 98.7 6.1E-08 1.3E-12 60.8 6.5 59 1-59 25-87 (98)
147 cd05765 Ig_3 Subgroup of the i 98.7 7.1E-08 1.5E-12 58.2 6.3 34 36-69 47-81 (81)
148 cd05723 Ig4_Neogenin Fourth im 98.7 7.8E-08 1.7E-12 56.5 6.3 55 1-69 16-71 (71)
149 cd07700 IgV_CD8_beta Immunoglo 98.7 1.1E-07 2.4E-12 60.6 7.4 57 1-57 24-93 (107)
150 cd05748 Ig_Titin_like Immunogl 98.7 1.4E-07 3.1E-12 55.8 7.4 58 1-69 16-74 (74)
151 cd05775 Ig_SLAM-CD84_like_N N- 98.7 7.4E-08 1.6E-12 60.3 6.4 36 34-69 59-96 (97)
152 cd05865 Ig1_NCAM-1 First immun 98.7 1.4E-07 3E-12 58.8 7.6 46 23-69 48-95 (96)
153 cd05902 Ig_Neurocan Immunoglob 98.7 2.4E-07 5.3E-12 59.0 8.8 70 1-70 26-107 (110)
154 cd05900 Ig_Aggrecan Immunoglob 98.7 2.1E-07 4.6E-12 59.5 8.5 70 1-70 31-109 (112)
155 cd04969 Ig5_Contactin_like Fif 98.7 7.1E-08 1.5E-12 57.0 5.8 55 1-69 18-73 (73)
156 cd05759 Ig2_KIRREL3-like Secon 98.7 2E-07 4.4E-12 56.4 7.7 64 90-156 2-68 (82)
157 cd05866 Ig1_NCAM-2 First immun 98.7 1.4E-07 2.9E-12 58.3 6.7 59 1-69 31-91 (92)
158 cd05871 Ig_Semaphorin_classIII 98.7 1.3E-07 2.9E-12 58.3 6.7 61 1-70 27-89 (91)
159 cd05718 Ig1_PVR_like First imm 98.7 4E-07 8.7E-12 57.0 9.0 66 1-69 20-97 (98)
160 cd05756 Ig1_IL1R_like First im 98.7 1.4E-07 3E-12 58.6 6.7 33 37-69 61-94 (94)
161 cd05760 Ig2_PTK7 Second immuno 98.7 2E-07 4.4E-12 55.6 7.2 23 37-59 39-61 (77)
162 cd05720 Ig_CD8_alpha Immunoglo 98.6 1.1E-07 2.3E-12 60.3 6.3 55 1-57 23-90 (104)
163 cd05751 Ig1_LILRB1_like First 98.6 3.4E-07 7.5E-12 56.5 8.4 66 81-156 10-75 (91)
164 cd05876 Ig3_L1-CAM Third immun 98.6 2E-07 4.3E-12 54.7 6.9 34 36-69 36-70 (71)
165 cd07706 IgV_TCR_delta Immunogl 98.6 1E-07 2.2E-12 61.8 6.1 57 1-57 32-93 (116)
166 cd05712 Ig_Siglec_N Immunoglob 98.6 1.7E-07 3.7E-12 61.0 7.1 57 1-57 37-101 (119)
167 cd00099 IgV Immunoglobulin var 98.6 1.4E-07 3.1E-12 59.8 6.5 59 1-59 24-90 (105)
168 cd05714 Ig_CSPGs_LP Immunoglob 98.6 5.4E-07 1.2E-11 57.3 9.2 39 32-70 64-103 (106)
169 cd04980 IgV_L_kappa Immunoglob 98.6 1.4E-07 3E-12 60.0 6.4 55 1-57 33-92 (106)
170 cd05885 Ig2_Necl-4 Second immu 98.6 4.7E-07 1E-11 54.0 8.1 63 90-156 2-65 (80)
171 cd05738 Ig2_RPTP_IIa_LAR_like 98.6 1.5E-07 3.2E-12 55.8 6.0 57 1-69 15-73 (74)
172 cd05863 Ig2_VEGFR-3 Second imm 98.6 1.1E-07 2.3E-12 55.0 5.2 34 36-69 31-65 (67)
173 cd05899 IgV_TCR_beta Immunoglo 98.6 3.7E-07 8E-12 58.5 8.3 75 78-156 4-94 (110)
174 cd05740 Ig_CEACAM_D4 Fourth im 98.6 1.7E-07 3.6E-12 57.9 6.3 33 37-69 56-90 (91)
175 cd05732 Ig5_NCAM-1_like Fifth 98.6 2.4E-07 5.2E-12 57.8 7.2 46 22-69 50-96 (96)
176 cd05745 Ig3_Peroxidasin Third 98.6 1.4E-07 3E-12 55.9 5.7 33 37-69 41-74 (74)
177 cd05886 Ig1_Nectin-1_like Firs 98.6 5.1E-07 1.1E-11 56.5 8.4 46 23-69 51-98 (99)
178 cd05846 Ig1_MRC-OX-2_like Firs 98.6 3.5E-07 7.6E-12 57.2 7.7 46 23-69 49-96 (97)
179 PF13927 Ig_3: Immunoglobulin 98.6 1.2E-07 2.6E-12 56.0 5.4 72 75-155 4-75 (75)
180 cd05713 Ig_MOG_like Immunoglob 98.6 2.8E-07 6.2E-12 57.9 7.3 47 23-69 51-99 (100)
181 cd05715 Ig_P0-like Immunoglobu 98.6 1.4E-06 3.1E-11 56.3 10.6 79 78-156 4-102 (116)
182 cd04977 Ig1_NCAM-1_like First 98.6 2.5E-07 5.3E-12 57.3 6.7 35 34-68 55-91 (92)
183 PF07686 V-set: Immunoglobulin 98.6 5.7E-07 1.2E-11 57.7 8.7 69 1-69 34-114 (114)
184 cd04971 Ig_TrKABC_d5 Fifth dom 98.6 1.2E-07 2.7E-12 57.1 5.2 34 35-68 45-79 (81)
185 cd05746 Ig4_Peroxidasin Fourth 98.6 1.8E-07 3.8E-12 54.7 5.7 41 22-67 27-68 (69)
186 cd05880 Ig_EVA1 Immunoglobulin 98.6 9.1E-07 2E-11 57.1 9.4 79 78-156 4-101 (115)
187 cd05887 Ig1_Nectin-3_like Firs 98.6 8.1E-07 1.7E-11 55.1 8.7 46 23-69 48-95 (96)
188 cd05731 Ig3_L1-CAM_like Third 98.6 2.1E-07 4.5E-12 54.6 5.8 33 37-69 37-70 (71)
189 PF07679 I-set: Immunoglobulin 98.6 3.5E-07 7.6E-12 56.3 7.0 46 22-69 44-90 (90)
190 cd05717 Ig1_Necl-1-3_like Firs 98.6 3.6E-07 7.8E-12 56.9 7.1 47 22-69 49-95 (95)
191 cd05736 Ig2_Follistatin_like S 98.6 3.9E-07 8.4E-12 54.2 6.9 34 37-70 40-74 (76)
192 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 3.6E-07 7.9E-12 56.9 6.8 69 82-156 10-92 (104)
193 cd05737 Ig_Myomesin_like_C C-t 98.6 2.4E-07 5.3E-12 57.3 6.1 58 1-68 33-91 (92)
194 cd05859 Ig4_PDGFR-alpha Fourth 98.6 3.1E-07 6.8E-12 57.8 6.4 35 36-70 65-100 (101)
195 cd05879 Ig_P0 Immunoglobulin ( 98.6 8.3E-07 1.8E-11 57.2 8.5 37 23-59 67-103 (116)
196 cd05774 Ig_CEACAM_D1 First imm 98.6 8.9E-07 1.9E-11 56.0 8.4 33 22-59 61-93 (105)
197 cd05889 Ig1_DNAM-1_like First 98.6 1.3E-06 2.8E-11 54.3 8.9 66 1-69 18-93 (96)
198 cd04973 Ig1_FGFR First immunog 98.5 2.9E-07 6.4E-12 55.2 5.9 32 37-68 46-78 (79)
199 cd05894 Ig_C5_MyBP-C C5 immuno 98.5 4.1E-07 8.9E-12 55.5 6.6 45 23-69 41-86 (86)
200 cd05851 Ig3_Contactin-1 Third 98.5 4.4E-07 9.5E-12 55.7 6.6 33 37-69 54-87 (88)
201 cd05855 Ig_TrkB_d5 Fifth domai 98.5 5.9E-07 1.3E-11 53.7 6.9 33 35-67 43-76 (79)
202 cd05730 Ig3_NCAM-1_like Third 98.5 5.2E-07 1.1E-11 56.2 7.0 34 37-70 59-93 (95)
203 cd04975 Ig4_SCFR_like Fourth i 98.5 6.7E-07 1.5E-11 56.2 7.5 35 36-70 65-100 (101)
204 cd05891 Ig_M-protein_C C-termi 98.5 3.8E-07 8.2E-12 56.5 6.3 58 1-68 33-91 (92)
205 cd05883 Ig2_Necl-2 Second immu 98.5 2E-06 4.3E-11 51.5 8.8 65 90-156 2-66 (82)
206 cd04976 Ig2_VEGFR Second immun 98.5 3.1E-07 6.7E-12 53.9 5.3 33 37-69 36-69 (71)
207 cd05869 Ig5_NCAM-1 Fifth immun 98.5 6.9E-07 1.5E-11 55.9 7.2 35 35-69 62-97 (97)
208 cd05895 Ig_Pro_neuregulin-1 Im 98.5 7.5E-07 1.6E-11 53.0 6.9 25 34-58 42-66 (76)
209 cd05867 Ig4_L1-CAM_like Fourth 98.5 8.8E-07 1.9E-11 52.7 7.0 33 37-69 42-75 (76)
210 cd05741 Ig_CEACAM_D1_like Firs 98.5 1.5E-06 3.3E-11 53.7 8.3 54 1-59 18-80 (92)
211 cd05857 Ig2_FGFR Second immuno 98.5 4.9E-07 1.1E-11 55.0 5.9 35 35-69 50-85 (85)
212 cd05900 Ig_Aggrecan Immunoglob 98.5 3.3E-06 7.2E-11 54.0 9.9 71 86-156 1-96 (112)
213 cd05714 Ig_CSPGs_LP Immunoglob 98.5 3E-06 6.6E-11 53.8 9.7 71 86-156 1-90 (106)
214 cd05864 Ig2_VEGFR-2 Second imm 98.5 5.2E-07 1.1E-11 52.7 5.6 31 37-67 35-66 (70)
215 cd00099 IgV Immunoglobulin var 98.5 1E-06 2.2E-11 55.9 7.3 74 83-157 2-90 (105)
216 cd04982 IgV_TCR_gamma Immunogl 98.5 3.9E-06 8.4E-11 54.3 10.1 76 79-156 5-99 (116)
217 cd04974 Ig3_FGFR Third immunog 98.5 2.9E-07 6.2E-12 56.8 4.5 34 36-69 55-89 (90)
218 cd00098 IgC Immunoglobulin Con 98.5 5.4E-07 1.2E-11 56.0 5.6 72 85-156 11-84 (95)
219 cd05897 Ig2_IL1R2_like Second 98.5 5.2E-07 1.1E-11 55.8 5.3 21 37-57 56-76 (95)
220 cd05764 Ig_2 Subgroup of the i 98.5 7.1E-07 1.5E-11 52.8 5.8 32 37-68 41-73 (74)
221 cd05878 Ig_Aggrecan_like Immun 98.4 4E-06 8.7E-11 53.6 9.6 71 86-156 1-94 (110)
222 cd05747 Ig5_Titin_like M5, fif 98.4 1.2E-06 2.6E-11 54.2 6.9 56 1-67 35-91 (92)
223 cd05713 Ig_MOG_like Immunoglob 98.4 3E-06 6.5E-11 53.3 8.6 70 87-156 1-87 (100)
224 cd07706 IgV_TCR_delta Immunogl 98.4 4.4E-06 9.5E-11 54.0 9.5 78 78-156 5-94 (116)
225 cd05877 Ig_LP_like Immunoglobu 98.4 3.9E-06 8.5E-11 53.3 9.1 70 86-156 1-90 (106)
226 cd04968 Ig3_Contactin_like Thi 98.4 1.7E-06 3.7E-11 53.0 7.1 33 37-69 54-87 (88)
227 cd04979 Ig_Semaphorin_C Immuno 98.4 1.2E-06 2.7E-11 53.8 6.4 59 1-70 27-87 (89)
228 cd05743 Ig_Perlecan_D2_like Im 98.4 1.3E-06 2.8E-11 52.2 6.4 34 23-58 31-64 (78)
229 cd04978 Ig4_L1-NrCAM_like Four 98.4 1.6E-06 3.5E-11 51.5 6.7 34 36-69 41-75 (76)
230 cd04980 IgV_L_kappa Immunoglob 98.4 5.2E-06 1.1E-10 52.8 9.5 76 78-156 6-93 (106)
231 cd05716 Ig_pIgR Immunoglobulin 98.4 3.6E-06 7.9E-11 52.7 8.5 73 83-156 3-86 (98)
232 cd05868 Ig4_NrCAM Fourth immun 98.4 1.7E-06 3.8E-11 51.4 6.7 33 37-69 42-75 (76)
233 cd05858 Ig3_FGFR-2 Third immun 98.4 1.2E-06 2.5E-11 54.0 6.0 34 36-69 55-89 (90)
234 cd05896 Ig1_IL1RAPL-1_like Fir 98.4 1.4E-06 3E-11 54.3 6.2 23 37-59 71-93 (104)
235 cd05773 Ig8_hNephrin_like Eigh 98.4 1.9E-06 4.2E-11 55.0 7.2 39 35-73 68-108 (109)
236 cd05856 Ig2_FGFRL1-like Second 98.4 9E-07 2E-11 53.3 5.4 34 35-68 47-81 (82)
237 cd05724 Ig2_Robo Second immuno 98.4 9.5E-07 2E-11 53.8 5.5 32 37-68 52-85 (86)
238 cd05861 Ig1_PDGFR-alphabeta Fr 98.4 3.2E-06 7E-11 51.3 7.7 36 35-70 45-83 (84)
239 cd05712 Ig_Siglec_N Immunoglob 98.4 8.7E-06 1.9E-10 52.9 10.2 79 78-156 5-102 (119)
240 cd05872 Ig_Sema4B_like Immunog 98.4 1.2E-06 2.7E-11 53.0 5.7 65 81-156 5-69 (85)
241 cd07690 Ig1_CD4 First immunogl 98.4 7.6E-07 1.7E-11 55.1 4.5 37 22-58 50-87 (94)
242 cd07702 Ig2_VEGFR-1 Second imm 98.4 2.7E-06 5.9E-11 49.9 6.5 31 37-67 37-68 (72)
243 cd07694 Ig2_CD4 Second immunog 98.4 6.3E-06 1.4E-10 49.5 8.1 65 81-156 8-73 (88)
244 cd05901 Ig_Versican Immunoglob 98.3 8.8E-06 1.9E-10 52.2 8.8 48 23-70 65-114 (117)
245 cd05750 Ig_Pro_neuregulin Immu 98.3 1.4E-06 3.1E-11 51.5 4.9 24 35-58 42-65 (75)
246 PF00047 ig: Immunoglobulin do 98.3 3.6E-06 7.8E-11 48.1 6.4 46 1-55 19-64 (64)
247 cd05728 Ig4_Contactin-2-like F 98.3 1.6E-06 3.5E-11 52.8 5.1 33 37-69 52-85 (85)
248 cd05757 Ig2_IL1R_like Second i 98.3 6E-06 1.3E-10 51.0 7.6 22 37-58 53-74 (92)
249 cd04984 IgV_L_lambda Immunoglo 98.3 4.6E-06 9.9E-11 52.2 7.1 72 83-156 2-85 (98)
250 PF07686 V-set: Immunoglobulin 98.3 7.5E-06 1.6E-10 52.4 8.1 77 79-156 8-101 (114)
251 PHA02826 IL-1 receptor-like pr 98.3 4.1E-06 8.9E-11 60.5 7.4 77 81-157 31-121 (227)
252 cd05888 Ig1_Nectin-4_like Frst 98.3 1.2E-05 2.7E-10 50.5 8.7 68 89-156 2-86 (100)
253 cd04981 IgV_H Immunoglobulin ( 98.3 9.2E-06 2E-10 52.6 8.2 77 79-155 4-97 (117)
254 cd05774 Ig_CEACAM_D1 First imm 98.3 3.4E-05 7.3E-10 48.8 10.5 72 79-157 5-93 (105)
255 cd05846 Ig1_MRC-OX-2_like Firs 98.3 7.4E-06 1.6E-10 51.2 7.5 68 87-156 1-83 (97)
256 cd05718 Ig1_PVR_like First imm 98.3 7.2E-06 1.6E-10 51.3 7.4 67 88-155 1-83 (98)
257 cd05742 Ig1_VEGFR_like First i 98.3 2.9E-06 6.4E-11 51.5 5.3 35 35-69 48-83 (84)
258 cd05775 Ig_SLAM-CD84_like_N N- 98.3 7.7E-06 1.7E-10 51.1 7.3 73 86-159 3-86 (97)
259 cd05755 Ig2_ICAM-1_like Second 98.2 1.5E-05 3.2E-10 49.8 8.2 77 78-156 7-84 (100)
260 cd05875 Ig6_hNeurofascin_like 98.2 7.9E-06 1.7E-10 48.7 6.8 49 1-60 15-67 (77)
261 cd07700 IgV_CD8_beta Immunoglo 98.2 2E-05 4.3E-10 50.2 9.0 72 83-155 2-93 (107)
262 PHA03376 BARF1; Provisional 98.2 7.2E-05 1.6E-09 51.4 11.9 74 81-156 20-109 (221)
263 cd05721 IgV_CTLA-4 Immunoglobu 98.2 6.3E-06 1.4E-10 52.3 6.5 54 1-55 33-93 (115)
264 cd05741 Ig_CEACAM_D1_like Firs 98.2 9.4E-06 2E-10 50.1 7.2 64 87-157 1-80 (92)
265 cd05711 Ig_FcalphaRI Immunoglo 98.2 2.2E-05 4.7E-10 48.7 8.6 69 79-154 7-75 (94)
266 cd05733 Ig6_L1-CAM_like Sixth 98.2 8.5E-06 1.8E-10 48.6 6.4 24 37-60 40-67 (77)
267 cd04972 Ig_TrkABC_d4 Fourth do 98.2 9.3E-06 2E-10 49.9 6.6 35 35-69 55-90 (90)
268 cd05729 Ig2_FGFR_like Second i 98.2 8.3E-06 1.8E-10 49.4 6.4 34 35-68 50-84 (85)
269 cd05884 Ig2_Necl-3 Second immu 98.2 1.2E-05 2.6E-10 48.6 6.6 64 90-156 2-68 (83)
270 cd05902 Ig_Neurocan Immunoglob 98.1 3.2E-05 6.9E-10 49.3 8.5 70 87-156 2-94 (110)
271 cd05886 Ig1_Nectin-1_like Firs 98.1 4.1E-05 8.9E-10 47.9 8.9 67 89-156 2-85 (99)
272 cd05887 Ig1_Nectin-3_like Firs 98.1 2.5E-05 5.4E-10 48.5 7.8 67 88-156 1-82 (96)
273 cd05761 Ig2_Necl-1-4_like Seco 98.1 1.3E-05 2.7E-10 48.4 6.1 63 90-156 2-67 (82)
274 cd05768 IgC_CH4 CH4 domain (fo 98.1 1.2E-05 2.5E-10 50.7 6.0 73 84-156 13-90 (102)
275 cd05874 Ig6_NrCAM Sixth immuno 98.1 2.6E-05 5.5E-10 46.5 7.1 24 37-60 40-67 (77)
276 cd05772 IgC_SIRP Signal-regula 98.1 5.1E-05 1.1E-09 48.5 8.8 72 83-156 17-91 (111)
277 cd05727 Ig2_Contactin-2-like S 98.1 4.1E-06 9E-11 51.8 3.7 21 37-57 61-81 (96)
278 smart00407 IGc1 Immunoglobulin 98.1 2.9E-05 6.2E-10 46.0 7.2 66 90-156 2-70 (75)
279 cd07699 IgC_L Immunoglobulin C 98.1 1.4E-05 2.9E-10 50.2 6.0 78 79-156 9-88 (100)
280 cd05847 IgC_CH2_IgE CH2 domain 98.1 2.3E-05 5E-10 48.5 6.9 71 86-156 13-85 (94)
281 cd07698 IgC_MHC_I_alpha3 Class 98.1 0.00014 3.1E-09 44.9 10.3 66 87-156 14-82 (93)
282 cd07693 Ig1_Robo First immunog 98.1 2.2E-05 4.8E-10 49.0 6.7 29 41-69 69-99 (100)
283 cd05901 Ig_Versican Immunoglob 98.1 0.00012 2.6E-09 47.0 9.8 70 87-156 2-101 (117)
284 cd05872 Ig_Sema4B_like Immunog 98.1 2.4E-05 5.2E-10 47.4 6.2 44 1-59 27-70 (85)
285 cd05873 Ig_Sema4D_like Immunog 98.0 1.4E-05 3.1E-10 48.6 5.3 22 37-58 49-70 (87)
286 cd05770 IgC_beta2m Class I maj 98.0 0.00019 4.1E-09 44.3 10.2 69 86-156 14-82 (93)
287 cd07696 IgC_CH3 CH3 domain (th 98.0 5.4E-05 1.2E-09 47.1 7.5 78 78-156 5-85 (96)
288 cd07697 IgC_TCR_gamma T cell r 98.0 0.00011 2.5E-09 45.5 8.8 75 79-156 8-84 (96)
289 cd05769 IgC_TCR_beta T cell re 98.0 3E-05 6.4E-10 49.8 6.3 78 79-156 10-91 (115)
290 cd07705 Ig2_Necl-1 Second immu 98.0 6.8E-05 1.5E-09 45.3 7.6 63 90-156 2-68 (83)
291 cd05720 Ig_CD8_alpha Immunoglo 98.0 4.9E-05 1.1E-09 48.1 7.1 68 84-155 3-90 (104)
292 cd05862 Ig1_VEGFR First immuno 98.0 1.7E-05 3.7E-10 48.4 4.6 36 35-70 49-85 (86)
293 smart00409 IG Immunoglobulin. 98.0 7.5E-05 1.6E-09 44.6 7.5 46 22-69 39-85 (86)
294 smart00410 IG_like Immunoglobu 98.0 7.5E-05 1.6E-09 44.6 7.5 46 22-69 39-85 (86)
295 cd05848 Ig1_Contactin-5 First 98.0 5.4E-05 1.2E-09 47.0 6.8 24 37-60 59-83 (94)
296 cd05889 Ig1_DNAM-1_like First 97.9 0.00018 4E-09 44.6 8.7 67 88-156 1-82 (96)
297 cd05849 Ig1_Contactin-1 First 97.9 5.1E-05 1.1E-09 47.0 6.2 23 37-59 58-81 (93)
298 cd05766 IgC_MHC_II_beta Class 97.9 0.00036 7.9E-09 43.2 9.9 67 86-156 13-82 (94)
299 cd05754 Ig3_Perlecan_like Thir 97.9 3.3E-05 7.2E-10 46.9 5.1 22 37-58 53-74 (85)
300 PHA02987 Ig domain OX-2-like p 97.9 0.00012 2.6E-09 50.4 8.0 87 80-169 23-125 (189)
301 cd05850 Ig1_Contactin-2 First 97.9 7.9E-05 1.7E-09 46.2 6.7 23 37-59 59-82 (94)
302 smart00406 IGv Immunoglobulin 97.9 0.00018 4E-09 42.9 8.1 65 89-153 1-81 (81)
303 cd05767 IgC_MHC_II_alpha Class 97.9 0.00052 1.1E-08 42.5 10.1 66 87-156 15-83 (94)
304 cd05758 Ig5_KIRREL3-like Fifth 97.9 9.4E-05 2E-09 46.2 6.8 45 23-67 49-97 (98)
305 PF07654 C1-set: Immunoglobuli 97.9 0.00014 3.1E-09 43.9 7.3 67 87-156 8-76 (83)
306 cd00096 Ig Immunoglobulin doma 97.8 9.6E-05 2.1E-09 42.2 6.1 65 90-156 1-65 (74)
307 cd05722 Ig1_Neogenin First imm 97.8 9.3E-05 2E-09 45.9 6.0 32 37-68 55-94 (95)
308 KOG3515|consensus 97.8 0.00024 5.3E-09 59.0 9.5 120 37-156 60-185 (741)
309 PF11465 Receptor_2B4: Natural 97.8 0.00037 8.1E-09 43.3 7.9 65 1-69 30-106 (108)
310 cd05845 Ig2_L1-CAM_like Second 97.8 3.1E-05 6.8E-10 47.9 3.2 33 21-58 48-81 (95)
311 smart00408 IGc2 Immunoglobulin 97.7 6.6E-05 1.4E-09 42.1 4.4 22 36-57 39-60 (63)
312 PHA03269 envelope glycoprotein 97.7 0.0041 8.9E-08 49.0 15.0 132 23-156 276-416 (566)
313 cd04986 IgC_CH2 CH2 domain (se 97.7 0.00011 2.4E-09 45.7 5.2 76 79-156 11-88 (99)
314 cd05739 Ig3_RPTP_IIa_LAR_like 97.7 0.00012 2.5E-09 42.6 4.9 29 37-67 39-68 (69)
315 cd05885 Ig2_Necl-4 Second immu 97.7 0.00021 4.7E-09 42.6 5.9 22 37-58 44-65 (80)
316 cd05753 Ig2_FcgammaR_like Seco 97.7 0.00012 2.7E-09 44.2 4.8 34 35-68 47-82 (83)
317 cd04985 IgC_CH1 CH1 domain (fi 97.7 0.00038 8.3E-09 43.2 7.0 70 86-156 15-86 (95)
318 cd05759 Ig2_KIRREL3-like Secon 97.6 0.00023 5.1E-09 42.8 5.9 32 37-68 47-81 (82)
319 cd05898 Ig5_KIRREL3 Fifth immu 97.6 0.00042 9.1E-09 43.2 6.8 45 22-66 48-96 (98)
320 PHA02987 Ig domain OX-2-like p 97.6 0.00034 7.4E-09 48.2 6.5 40 34-73 83-125 (189)
321 cd05771 IgC_Tapasin_R Tapasin- 97.6 0.00023 5E-09 47.5 5.7 35 135-169 2-39 (139)
322 cd05721 IgV_CTLA-4 Immunoglobu 97.6 0.0014 3.1E-08 41.7 8.9 77 79-155 5-95 (115)
323 cd05752 Ig1_FcgammaR_like Frst 97.6 0.0002 4.4E-09 42.7 4.8 30 37-68 48-77 (78)
324 PHA02633 hypothetical protein; 97.5 0.00033 7.1E-09 38.9 4.9 36 36-71 18-54 (63)
325 PHA03271 envelope glycoprotein 97.5 0.017 3.8E-07 44.7 15.4 133 22-156 193-334 (490)
326 PHA03273 envelope glycoprotein 97.5 0.016 3.4E-07 45.6 14.8 120 35-156 197-324 (486)
327 cd04967 Ig1_Contactin First Ig 97.5 0.00048 1E-08 42.3 5.7 23 37-59 59-82 (91)
328 PF08205 C2-set_2: CD80-like C 97.4 0.0013 2.9E-08 40.1 6.9 67 87-156 14-83 (89)
329 cd00096 Ig Immunoglobulin doma 97.3 0.0004 8.8E-09 39.4 4.0 25 34-58 41-65 (74)
330 PF13927 Ig_3: Immunoglobulin 97.3 0.00092 2E-08 38.9 5.0 23 35-57 53-75 (75)
331 cd07692 Ig_CD3_epsilon Immunog 97.2 0.00058 1.3E-08 38.6 3.5 52 85-156 5-56 (65)
332 cd07691 Ig_CD3_gamma_delta Imm 97.1 0.0025 5.5E-08 36.4 5.4 50 86-155 5-54 (69)
333 PHA03270 envelope glycoprotein 97.0 0.07 1.5E-06 41.7 14.2 120 35-156 181-307 (466)
334 PHA02633 hypothetical protein; 97.0 0.0019 4E-08 36.0 3.9 37 132-168 16-55 (63)
335 cd05761 Ig2_Necl-1-4_like Seco 96.9 0.0061 1.3E-07 36.6 6.5 21 37-57 46-66 (82)
336 cd05883 Ig2_Necl-2 Second immu 96.9 0.0086 1.9E-07 35.9 6.6 35 37-71 45-81 (82)
337 cd05751 Ig1_LILRB1_like First 96.8 0.0024 5.2E-08 39.2 4.0 25 34-58 51-75 (91)
338 cd05711 Ig_FcalphaRI Immunoglo 96.8 0.0038 8.2E-08 38.6 4.8 21 36-56 55-75 (94)
339 cd07705 Ig2_Necl-1 Second immu 96.7 0.013 2.8E-07 35.3 6.9 22 37-58 47-68 (83)
340 cd07689 Ig2_VCAM-1 Second immu 96.7 0.015 3.2E-07 36.1 7.0 72 84-156 12-85 (99)
341 PHA02914 Immunoglobulin-like d 96.7 0.11 2.4E-06 40.3 12.9 75 82-156 274-368 (500)
342 cd05860 Ig4_SCFR Fourth immuno 96.7 0.024 5.1E-07 35.4 7.7 34 36-69 65-99 (101)
343 cd00098 IgC Immunoglobulin Con 96.5 0.0038 8.2E-08 38.5 3.6 22 37-58 63-84 (95)
344 PF13895 Ig_2: Immunoglobulin 96.5 0.025 5.4E-07 33.2 7.1 32 38-69 47-80 (80)
345 KOG3515|consensus 96.4 0.0055 1.2E-07 51.3 5.0 69 81-159 16-84 (741)
346 cd07703 Ig2_Nectin-2_like Seco 96.3 0.04 8.7E-07 34.1 7.0 60 89-156 17-81 (95)
347 cd05719 Ig2_PVR_like Second im 96.2 0.05 1.1E-06 33.7 7.1 60 88-156 16-81 (95)
348 cd05749 Ig2_Tyro3_like Second 96.1 0.034 7.3E-07 33.3 5.9 23 36-60 49-71 (81)
349 smart00407 IGc1 Immunoglobulin 95.8 0.064 1.4E-06 31.5 6.1 31 21-58 40-70 (75)
350 PF08204 V-set_CD47: CD47 immu 95.6 0.026 5.5E-07 36.9 4.2 69 86-156 26-107 (130)
351 cd05884 Ig2_Necl-3 Second immu 95.6 0.067 1.5E-06 32.2 5.7 21 37-57 47-67 (83)
352 PHA02982 hypothetical protein; 95.2 0.059 1.3E-06 38.0 5.0 73 81-156 33-122 (251)
353 cd07704 Ig2_Nectin-3-4_like Se 95.1 0.12 2.6E-06 32.1 5.7 68 81-156 10-83 (97)
354 cd07703 Ig2_Nectin-2_like Seco 94.6 0.27 5.8E-06 30.5 6.4 22 37-58 60-81 (95)
355 PHA03042 CD47-like protein; Pr 94.4 0.23 4.9E-06 36.6 6.6 60 86-156 30-92 (286)
356 cd05719 Ig2_PVR_like Second im 94.3 0.35 7.6E-06 29.9 6.5 22 37-58 60-81 (95)
357 cd07698 IgC_MHC_I_alpha3 Class 94.1 0.28 6.1E-06 30.1 5.9 19 37-58 64-82 (93)
358 PF07354 Sp38: Zona-pellucida- 93.3 0.16 3.4E-06 37.3 4.2 31 22-57 28-58 (271)
359 cd07699 IgC_L Immunoglobulin C 93.0 0.24 5.3E-06 30.9 4.3 30 22-58 59-88 (100)
360 PF07654 C1-set: Immunoglobuli 93.0 0.35 7.6E-06 28.9 4.8 48 1-58 27-76 (83)
361 PF07354 Sp38: Zona-pellucida- 92.9 0.13 2.8E-06 37.7 3.2 45 105-156 14-59 (271)
362 cd05847 IgC_CH2_IgE CH2 domain 92.9 0.32 7E-06 30.0 4.6 31 21-58 55-85 (94)
363 cd07694 Ig2_CD4 Second immunog 92.7 0.52 1.1E-05 28.6 5.1 24 34-57 49-72 (88)
364 cd07696 IgC_CH3 CH3 domain (th 92.3 0.28 6.2E-06 30.4 3.8 22 37-58 64-85 (96)
365 cd05772 IgC_SIRP Signal-regula 92.2 0.94 2E-05 28.9 6.2 21 37-58 70-91 (111)
366 PF06328 Lep_receptor_Ig: Ig-l 92.2 0.91 2E-05 27.7 5.8 71 78-154 9-82 (89)
367 PHA02865 MHC-like TNF binding 91.6 0.99 2.1E-05 34.7 6.6 23 89-111 216-238 (338)
368 PHA03240 envelope glycoprotein 90.7 0.47 1E-05 33.6 3.9 19 35-53 104-122 (258)
369 PHA03269 envelope glycoprotein 90.7 6.9 0.00015 31.7 10.5 70 37-114 393-470 (566)
370 PF08204 V-set_CD47: CD47 immu 90.3 1.4 3E-05 29.0 5.6 36 33-69 83-119 (130)
371 KOG1480|consensus 90.1 0.11 2.4E-06 43.7 0.5 70 79-156 136-205 (909)
372 cd05755 Ig2_ICAM-1_like Second 90.0 0.86 1.9E-05 28.5 4.3 22 36-57 62-83 (100)
373 PHA03052 Hypothetical protein; 89.8 2.5 5.4E-05 24.1 6.2 41 79-119 4-45 (69)
374 cd05766 IgC_MHC_II_beta Class 89.5 2.1 4.5E-05 26.4 5.8 19 37-58 64-82 (94)
375 cd04985 IgC_CH1 CH1 domain (fi 89.4 1 2.2E-05 27.8 4.4 31 22-59 57-87 (95)
376 cd05767 IgC_MHC_II_alpha Class 89.1 2.6 5.5E-05 26.0 6.0 28 21-58 56-83 (94)
377 KOG1480|consensus 89.1 0.22 4.9E-06 41.9 1.6 22 37-58 184-205 (909)
378 cd05770 IgC_beta2m Class I maj 88.9 2.8 6.2E-05 25.8 6.1 15 44-58 68-82 (93)
379 cd05769 IgC_TCR_beta T cell re 88.7 1.8 3.9E-05 27.8 5.2 23 37-59 69-92 (115)
380 PHA03042 CD47-like protein; Pr 88.5 3.1 6.6E-05 30.9 6.8 39 17-57 53-91 (286)
381 cd04986 IgC_CH2 CH2 domain (se 87.5 1.5 3.3E-05 27.4 4.2 49 1-58 39-88 (99)
382 cd07697 IgC_TCR_gamma T cell r 86.5 5.1 0.00011 24.8 6.2 21 37-59 65-85 (96)
383 cd05768 IgC_CH4 CH4 domain (fo 85.9 1.4 2.9E-05 27.7 3.5 22 37-58 69-90 (102)
384 PF02124 Marek_A: Marek's dise 85.6 11 0.00024 27.1 13.4 72 36-115 39-117 (211)
385 PF08205 C2-set_2: CD80-like C 84.9 5.3 0.00011 23.9 5.7 22 37-58 62-83 (89)
386 cd07704 Ig2_Nectin-3-4_like Se 83.7 7.3 0.00016 24.2 5.9 49 1-58 35-83 (97)
387 KOG4597|consensus 82.0 3.3 7.1E-05 33.3 4.7 70 80-156 204-279 (560)
388 PHA02982 hypothetical protein; 81.4 17 0.00038 26.1 7.9 73 34-114 98-173 (251)
389 PHA03282 envelope glycoprotein 77.3 6.4 0.00014 31.7 4.9 28 34-61 331-358 (540)
390 PHA02914 Immunoglobulin-like d 76.6 37 0.00079 27.1 13.1 86 22-115 328-421 (500)
391 PF11465 Receptor_2B4: Natural 75.7 3.6 7.9E-05 25.9 2.7 27 132-158 69-95 (108)
392 PHA03189 UL14 tegument protein 74.6 15 0.00031 28.0 5.9 36 22-58 120-155 (348)
393 PF11049 KSHV_K1: Glycoprotein 70.1 18 0.00039 20.6 5.1 58 91-169 2-59 (71)
394 PF01688 Herpes_gI: Alphaherpe 67.1 22 0.00047 24.5 5.1 23 35-57 123-145 (161)
395 PHA03112 IL-18 binding protein 65.3 39 0.00084 22.6 5.9 27 86-112 37-63 (141)
396 PHA03282 envelope glycoprotein 64.5 14 0.00031 29.9 4.3 30 22-57 116-145 (540)
397 PHA03189 UL14 tegument protein 62.4 69 0.0015 24.6 8.2 22 135-157 135-156 (348)
398 KOG4597|consensus 61.5 9.3 0.0002 30.9 2.9 36 34-69 255-291 (560)
399 PHA03286 envelope glycoprotein 60.1 21 0.00047 28.7 4.6 25 37-61 308-332 (492)
400 PF02480 Herpes_gE: Alphaherpe 59.7 16 0.00034 29.7 4.0 27 34-60 267-293 (439)
401 PHA03240 envelope glycoprotein 59.6 46 0.001 24.0 5.7 19 132-150 103-121 (258)
402 PHA03283 envelope glycoprotein 57.2 29 0.00063 28.6 5.0 27 34-60 313-339 (542)
403 PF05790 C2-set: Immunoglobuli 56.1 41 0.00089 20.0 8.4 21 37-57 44-64 (80)
404 PHA03290 envelope glycoprotein 55.1 48 0.001 25.7 5.5 38 34-71 127-165 (357)
405 KOG0200|consensus 49.2 1.2E+02 0.0026 25.9 7.7 113 36-155 13-138 (609)
406 PHA03281 envelope glycoprotein 49.1 46 0.001 27.7 4.9 27 34-60 473-499 (642)
407 KOG3611|consensus 48.1 36 0.00078 29.7 4.5 22 37-58 613-634 (737)
408 KOG0613|consensus 47.5 41 0.00088 31.0 4.8 121 34-157 276-416 (1205)
409 PHA03286 envelope glycoprotein 45.8 1.7E+02 0.0036 24.0 10.2 74 37-110 128-225 (492)
410 PHA03283 envelope glycoprotein 44.3 1.9E+02 0.0041 24.2 10.4 76 35-110 133-233 (542)
411 PHA03292 envelope glycoprotein 42.5 87 0.0019 24.8 5.3 36 35-70 127-163 (413)
412 PHA03289 envelope glycoprotein 42.2 1E+02 0.0022 23.9 5.5 35 35-69 121-156 (352)
413 PF10856 DUF2678: Protein of u 40.6 9.7 0.00021 24.4 0.1 9 1-9 79-87 (118)
414 PF15096 G6B: G6B family 33.3 40 0.00087 23.7 2.1 26 142-167 82-107 (224)
415 PF02480 Herpes_gE: Alphaherpe 31.8 15 0.00034 29.7 0.0 75 36-110 89-189 (439)
416 PF06832 BiPBP_C: Penicillin-B 29.6 1.3E+02 0.0028 18.0 9.5 56 89-162 31-86 (89)
417 PHA03273 envelope glycoprotein 28.7 3.4E+02 0.0073 22.4 7.2 71 134-206 198-273 (486)
418 PHA02935 Hypothetical protein; 27.0 1.9E+02 0.0041 20.7 4.6 19 38-56 104-122 (349)
419 PHA03270 envelope glycoprotein 24.1 4.1E+02 0.0088 21.8 7.4 72 133-206 181-257 (466)
420 PHA03291 envelope glycoprotein 23.1 2.4E+02 0.0051 22.3 4.8 36 35-70 128-164 (401)
421 KOG4637|consensus 21.7 1.6E+02 0.0034 23.5 3.7 29 32-62 350-378 (464)
422 PHA03281 envelope glycoprotein 20.7 5.3E+02 0.012 21.9 9.3 75 36-110 298-394 (642)
No 1
>KOG3513|consensus
Probab=99.83 E-value=9.5e-19 Score=144.58 Aligned_cols=124 Identities=24% Similarity=0.418 Sum_probs=106.3
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV 115 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~ 115 (207)
+|.|.+++.+|+|.|.|.+.|. +.......|.|..+|..+..+.+..+..|+++.+.|.+.+.|.| .+.|.++|.++
T Consensus 295 vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p--~v~WlkNg~pl 372 (1051)
T KOG3513|consen 295 VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNP--TVKWLKNGEPL 372 (1051)
T ss_pred EEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCC--ceEEeeCCeec
Confidence 8999999999999999999984 56788889999999999999999999999999999999999999 89999999998
Q ss_pred EecCC-CceEEEEecccceEEEEEEecccCCCeEEEEEeecC---CCCeEEEEEecC
Q psy3475 116 NYSQR-GGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS---DGASVVVHVLNG 168 (207)
Q Consensus 116 ~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~---~~~~~~~~v~~~ 168 (207)
....+ .+..+ ....|.|++++..|+|+|-|.|+|. .-+++.|.|+..
T Consensus 373 ~~~~r~~~~~i------~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~ 423 (1051)
T KOG3513|consen 373 EPAERDPRYKI------DDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS 423 (1051)
T ss_pred CccCCCcceEE------eCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc
Confidence 75433 22222 3568999999999999999999999 344667777754
No 2
>KOG3513|consensus
Probab=99.81 E-value=2e-18 Score=142.71 Aligned_cols=148 Identities=22% Similarity=0.320 Sum_probs=121.9
Q ss_pred eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec-CCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEee
Q psy3475 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST-EPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLE 98 (207)
Q Consensus 20 ~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 98 (207)
..++|+.+..++ +|.|.+++.+|+|.|+|.|.| .+......+|.|..++.+..+|....+..|+.+.|.|.+..
T Consensus 468 ~~~~r~~i~edG-----tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~sh 542 (1051)
T KOG3513|consen 468 LQSGRIRILEDG-----TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASH 542 (1051)
T ss_pred ccCceEEECCCC-----cEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeeccc
Confidence 346888887666 799999999999999999998 46688899999999999999888888999999999999999
Q ss_pred CCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC---CCCeEEEEEecCCcccc
Q psy3475 99 TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS---DGASVVVHVLNGKKFNK 173 (207)
Q Consensus 99 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~---~~~~~~~~v~~~~~~~~ 173 (207)
++.....+.|.++|..+............+.... ..|+|.+++.+|.|.|+|.|... .++...+.|..++.++.
T Consensus 543 D~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~-g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~ 619 (1051)
T KOG3513|consen 543 DPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDS-GRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPP 619 (1051)
T ss_pred CCCcceEEEEEECCEEhhccCCCCceEEeCCcCc-cceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCC
Confidence 8888889999999999877655443333332222 67999999999999999999876 45556777777666665
No 3
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.75 E-value=4.7e-17 Score=116.79 Aligned_cols=108 Identities=30% Similarity=0.436 Sum_probs=81.2
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeC-----CCCCcEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLET-----PDPPSFIYW 108 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-----~~~~~~~~W 108 (207)
..+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+ +....+..|+.+.|.|.+.+. |.| .+.|
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p--~I~W 168 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDY--TLTW 168 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCc--eEEE
Confidence 4489999999999999999999843 3455566666432 223456789999999998643 344 8999
Q ss_pred EeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 109 YRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
++++..+....+ +... .....|.|.+++.+|+|.|+|.+...
T Consensus 169 yKng~~l~~~~r--~~~~----~~~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 169 YKNGNIVLYTDR--IQLR----NNNSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred EECCEECCCCCC--EEEe----CCCCEEEECcCCHHhCEEEEEEEEEe
Confidence 999998864432 2221 12458999999999999999999886
No 4
>KOG4194|consensus
Probab=99.72 E-value=5.2e-17 Score=126.86 Aligned_cols=132 Identities=23% Similarity=0.389 Sum_probs=111.8
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCC--ceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA 112 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~ 112 (207)
...|.+.|++-.|+|.|.|.+.|.. ..+..++|.|-..|.+...|.+.++..|+.+.|.|.+.|.|.| .|.|.++|
T Consensus 573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~P--eIawqkdg 650 (873)
T KOG4194|consen 573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRP--EIAWQKDG 650 (873)
T ss_pred hheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCc--ceeehhcC
Confidence 4579999999999999999999843 3567789999999999999999999999999999999999999 89999866
Q ss_pred EE-EEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC---CCCeEEEEEecCCccc
Q psy3475 113 NV-VNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS---DGASVVVHVLNGKKFN 172 (207)
Q Consensus 113 ~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~---~~~~~~~~v~~~~~~~ 172 (207)
.. ++....+|+.++++ ...+.|.++..+|.|-|+|.|.|. .+++..+.|+..|.+.
T Consensus 651 gtdFPAA~eRRl~Vmpe----dd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~ 710 (873)
T KOG4194|consen 651 GTDFPAARERRLHVMPE----DDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFS 710 (873)
T ss_pred CCCCchhhhheeeecCC----CCEEEEecccccccceeEEeeeccccceeeceEEEEecCCccc
Confidence 54 76666667777753 467899999999999999999998 4567788888765543
No 5
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.72 E-value=9.1e-16 Score=116.55 Aligned_cols=123 Identities=21% Similarity=0.306 Sum_probs=86.2
Q ss_pred EEEEcccCCCCCeEEEEEEecC-Cce----eeeEEEEEEe--ccceEecCcceEEecCCcEEEEEEEeeCCCCC-cEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKI----SIGYKLNVVI--SKAKIIGNSELYIKSGSDINLTCVVLETPDPP-SFIYW 108 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~----~~~~~l~v~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~~~W 108 (207)
.|.|.+++.+|+|.|+|.+.+. +.. ...+.|.|.. .|+....|....+..|+.+.|.|.+.+.|.+. ..+.|
T Consensus 178 ~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W 257 (326)
T PHA02785 178 IITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFW 257 (326)
T ss_pred eEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEE
Confidence 7999999999999999999873 222 2334555543 22233446666777899999999999987641 37899
Q ss_pred EeCCEEEEecC---CCceEEEEec------ccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 109 YRGANVVNYSQ---RGGISVVTEK------QTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 109 ~~~~~~~~~~~---~~~~~~~~~~------~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+++|..+.... .+++...... ......|.|.+++.+|.|+|+|.|.|..+.
T Consensus 258 ~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 258 ISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred EECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 99999875422 1122221110 112467999999999999999999998543
No 6
>KOG4221|consensus
Probab=99.65 E-value=9.5e-15 Score=121.61 Aligned_cols=136 Identities=32% Similarity=0.471 Sum_probs=106.3
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC--ceeeeEEEEEEecc------ceEecCcceEEecCCcEEEE
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVISK------AKIIGNSELYIKSGSDINLT 93 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~------~~~~~~~~~~~~~g~~~~l~ 93 (207)
++|+.+.-++ .|.|.++++.|.|.|+|.+.+.. ..+..+.|+|...+ .++..+....+..|+.+.|.
T Consensus 184 ~~r~i~lpsG-----~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~le 258 (1381)
T KOG4221|consen 184 DSRVIVLPSG-----ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLE 258 (1381)
T ss_pred CCcEEEcCCC-----cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEE
Confidence 4577766555 79999999999999999998743 35677788887332 23445777788899999999
Q ss_pred EEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC---CCCeEEEEEecCCc
Q psy3475 94 CVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS---DGASVVVHVLNGKK 170 (207)
Q Consensus 94 C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~---~~~~~~~~v~~~~~ 170 (207)
|.+.+.|.| .|.|.+++..+.-+. .++... ..+.|.|++++..|+|.|+|+|+|. ..+...+.|+.+|.
T Consensus 259 Cvvs~~p~p--~v~Wlrng~~i~~ds-~rivl~-----g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~ 330 (1381)
T KOG4221|consen 259 CVVSGVPKP--SVKWLRNGEKISVDS-YRIVLV-----GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPG 330 (1381)
T ss_pred EEecCCCCC--ceEEeeCCeeeeecc-eEEEEe-----cccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCC
Confidence 999999999 999999999887654 233322 3568999999999999999999995 55566777776543
No 7
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.64 E-value=2.1e-14 Score=96.22 Aligned_cols=120 Identities=19% Similarity=0.213 Sum_probs=81.9
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV 115 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~ 115 (207)
+|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.....+.......|+.+.|.|.+.+..++...+.|++++...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 7999999999999999999863 456777889998888776555544445788999999999975554589999987531
Q ss_pred Ee-----cCCC--ceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 116 NY-----SQRG--GISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 116 ~~-----~~~~--~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.. .... ......++ ....+.|.+......+.+.|+|.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence 11 0000 00000111 122356666655555677999999886
No 8
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.63 E-value=7.6e-15 Score=92.12 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=71.5
Q ss_pred ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
.+...+....+..|+.+.|.|.+.|.|.+ .+.|++++..+..+.+ +.... ....+.|.|.++..+|+|.|+|.+
T Consensus 2 ~~~~~p~~~~v~~G~~v~l~C~~~G~p~p--~v~W~kdg~~l~~~~~--~~~~~--~~~~s~L~I~~~~~~D~G~Ytc~a 75 (98)
T cd05762 2 QIIQFPEDMKVRAGESVELFCKVTGTQPI--TCTWMKFRKQIQEGEG--IKIEN--TENSSKLTITEGQQEHCGCYTLEV 75 (98)
T ss_pred ceEECCcCEEEECCCEEEEEEEEcccCCC--ceEEEECCEEecCCCc--EEEEe--cCCeeEEEECCCChhhCEEEEEEE
Confidence 34455777889999999999999999888 8999999999865433 33322 224578999999999999999999
Q ss_pred ecCC---CCeEEEEEecCCccc
Q psy3475 154 SSSD---GASVVVHVLNGKKFN 172 (207)
Q Consensus 154 ~n~~---~~~~~~~v~~~~~~~ 172 (207)
.|.. .+.+.|.|...|.++
T Consensus 76 ~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 76 ENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred EcCCCceeEEEEEEEecCCCCC
Confidence 9993 345667777655443
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.63 E-value=4.8e-14 Score=107.22 Aligned_cols=110 Identities=17% Similarity=0.235 Sum_probs=75.9
Q ss_pred EEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEeccc--eEecCcceEEecCCcEEEEEEE-----eeCCCCCcEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKA--KIIGNSELYIKSGSDINLTCVV-----LETPDPPSFIYW 108 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~--~~~~~~~~~~~~g~~~~l~C~~-----~~~~~~~~~~~W 108 (207)
.|.|.++..+|+|.|+|.+.|.. ....++.|.|..... +...+....+..|..+.+.|.. .+.+.+ .+.|
T Consensus 83 ~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~--~i~W 160 (326)
T PHA02785 83 NMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNA--DIIW 160 (326)
T ss_pred eEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCc--eEEE
Confidence 58899999999999999999853 355667777755321 2112233445688999999972 244555 8999
Q ss_pred EeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 109 YRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
+++.. +. ..++... ..+.|.|.+++.+|.|.|+|.+.|..
T Consensus 161 ~k~~~-~~---~~r~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~ 200 (326)
T PHA02785 161 SGHRR-LR---NKRLKQR-----TPGIITIEDVRKNDAGYYTCVLKYIY 200 (326)
T ss_pred ccCCc-cC---CcceEec-----CCCeEEEeecChhhCeEEEEEEEecc
Confidence 87542 21 1122211 23589999999999999999999973
No 10
>KOG4194|consensus
Probab=99.58 E-value=1.1e-13 Score=108.57 Aligned_cols=122 Identities=22% Similarity=0.440 Sum_probs=101.0
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec-CCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCC
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST-EPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPD 101 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 101 (207)
.|+.+-.+++ .+.|.|+..+|+|.|+|.|.| .+.....+.|.|.+.|.+..+..++.+..|+.+.|.|.+.+.|.
T Consensus 660 RRl~Vmpedd----~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a 735 (873)
T KOG4194|consen 660 RRLHVMPEDD----VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPA 735 (873)
T ss_pred heeeecCCCC----EEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCC
Confidence 4566555555 789999999999999999998 46688899999999998888888889999999999999999876
Q ss_pred -CCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 102 -PPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 102 -~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
| .+.|+++.+++....+..+ .....-|.+.+..-+|+|.|+|.+.+.
T Consensus 736 ~p--r~~W~k~d~pil~t~rh~f------~d~dQllvv~~~~~~daG~yTcem~~~ 783 (873)
T KOG4194|consen 736 DP--RLEWFKEDKPILITERHTF------PDGDQLLVVKENLVEDAGIYTCEMSNT 783 (873)
T ss_pred Cc--cccccCCCCceEEeecccC------CCCCeEEEEEehhhhhcceEEEEEEee
Confidence 5 8899998888765443221 224567888888999999999999998
No 11
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.49 E-value=2.1e-13 Score=83.95 Aligned_cols=78 Identities=23% Similarity=0.422 Sum_probs=61.3
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
||.+...+.+..+..|+.+.|.|.+.|.|.| .+.|++++..+....+ +. .....|.|.+++.+|+|.|+|
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P--~v~W~k~~~~~~~~~~--~~------~~~~~L~I~~v~~~D~G~Y~C 70 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVP--VIRWRKILEPMPATAE--IS------MSGAVLKIFNIQPEDEGTYEC 70 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCC--EEEEEECCcCCCCCCE--Ee------cCCCEEEECcCChhhCEEEEE
Confidence 3555666778888999999999999999988 8999998876543211 11 123579999999999999999
Q ss_pred EeecCCCC
Q psy3475 152 APSSSDGA 159 (207)
Q Consensus 152 ~~~n~~~~ 159 (207)
.|.|..+.
T Consensus 71 ~A~N~~G~ 78 (88)
T cd05851 71 EAENIKGK 78 (88)
T ss_pred EEEcCCCc
Confidence 99999444
No 12
>KOG4221|consensus
Probab=99.49 E-value=1.8e-13 Score=114.25 Aligned_cols=120 Identities=24% Similarity=0.425 Sum_probs=97.6
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCC
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPD 101 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 101 (207)
.|+.+.... .|.|.+++.+|+|.|+|.+.|. ......+.|.|+.+|.+...+.+....++..+.+.|.+.+.|.
T Consensus 283 ~rivl~g~~-----slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~ 357 (1381)
T KOG4221|consen 283 YRIVLVGGS-----SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPI 357 (1381)
T ss_pred eEEEEeccc-----ceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCc
Confidence 456554333 7999999999999999999873 3467788999999998888888888889999999999999977
Q ss_pred CCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 102 PPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 102 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
| .+.|+++|..+..+.. +++.. .. .|.|..+...|.|.|-|.+.|.
T Consensus 358 p--~v~w~kNgd~~ipsdy--~ki~~----~~-~lrIlgi~~sdeg~yQcvaen~ 403 (1381)
T KOG4221|consen 358 P--TVRWYKNGDRIIPSDY--FKIVG----GG-NLRILGIVKSDEGFYQCVAEND 403 (1381)
T ss_pred c--eEEEEecCcccCcccc--eEecC----CC-CcEEEEEecccchhhhhhhccC
Confidence 7 8999999988766433 22222 22 2888888999999999999998
No 13
>KOG4222|consensus
Probab=99.49 E-value=3.5e-13 Score=111.91 Aligned_cols=126 Identities=25% Similarity=0.375 Sum_probs=103.7
Q ss_pred EEEEcccCCCCCeEEEEEEecC-C-ceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-P-KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV 114 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~-~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~ 114 (207)
.|.|.+++.+|+|.|.|.+.|- + ..+....|.|.+.|.+...+..+.+..|..+.+.|.+.+.|.| .+.|.+++..
T Consensus 188 ~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P--~Vrwkk~~~~ 265 (1281)
T KOG4222|consen 188 NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQP--TVRWKKDDPS 265 (1281)
T ss_pred cEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCC--ceeeeccCCC
Confidence 7999999999999999999883 3 3567789999999999888999999999999999999999999 8899886655
Q ss_pred EEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC---CCCeEEEEEecCCcc
Q psy3475 115 VNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS---DGASVVVHVLNGKKF 171 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~---~~~~~~~~v~~~~~~ 171 (207)
++.. ++.+.. +..+|.|..++..|.|.|.|.+.|. .++...+.|...+..
T Consensus 266 ~P~~---ry~i~~----d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f 318 (1281)
T KOG4222|consen 266 LPRS---RYSILD----DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSF 318 (1281)
T ss_pred CCcc---ceeeee----ccccccccccCCCcccceeeeccccccccccccceEEecCccc
Confidence 5432 233332 3368999999999999999999998 666778888766654
No 14
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.48 E-value=1.2e-12 Score=81.35 Aligned_cols=76 Identities=29% Similarity=0.513 Sum_probs=59.6
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
|..+.+.+|+.+.|.|.+.+.|.| .+.|++++..+....+ +....+ ......|.|.+++.+|+|.|+|.+.|..+
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p--~v~W~k~g~~l~~~~~--~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDP--EVSWLKNDQALALSDH--YNVKVE-QGKYASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCC--eEEEEECCEECccCCC--EEEEEc-CCCEEEEEEccCChhhCEEEEEEEEECCC
Confidence 456778899999999999999888 8999999988865443 222221 11345799999999999999999999844
Q ss_pred C
Q psy3475 159 A 159 (207)
Q Consensus 159 ~ 159 (207)
.
T Consensus 83 ~ 83 (92)
T cd05737 83 G 83 (92)
T ss_pred c
Confidence 3
No 15
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.48 E-value=4.6e-13 Score=81.19 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=57.1
Q ss_pred CcEEEEEEEeeCCCCCcEEEEEeCCEEEEecC-CCceEEEEecccceEEEEEEecccCCCeEEEEEeecC---CCCeEEE
Q psy3475 88 SDINLTCVVLETPDPPSFIYWYRGANVVNYSQ-RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS---DGASVVV 163 (207)
Q Consensus 88 ~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~---~~~~~~~ 163 (207)
+.+.|.|.+.+.+.+...+.|+++|..+.... ..++.... +....+.|.|.+++.+|+|+|+|.|.|. ..++..|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~-~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVG-GQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEec-cCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence 36789999998776666999999999997432 22332221 1123468999999999999999999998 4445566
Q ss_pred EEec
Q psy3475 164 HVLN 167 (207)
Q Consensus 164 ~v~~ 167 (207)
.|..
T Consensus 80 ~V~~ 83 (85)
T cd05853 80 IVRG 83 (85)
T ss_pred EEec
Confidence 5554
No 16
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.46 E-value=2e-12 Score=79.48 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=58.1
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEe--cccceEEEEEEecccCCCeEEEEEeecCC---CCeE
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTE--KQTRTSRLVISKAVTSDSGNYTCAPSSSD---GASV 161 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~---~~~~ 161 (207)
|+.+.|.|.+.+.|.+ .+.|++++..+.... .++..... +....+.|.|.++..+|.|.|+|.|.|.. ....
T Consensus 1 g~~~~l~C~~~g~p~~--~i~W~k~~~~i~~~~-~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~ 77 (88)
T cd05735 1 GQKKEMSCTAHGEKPI--IVRWEKEDRIINPEM-SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGII 77 (88)
T ss_pred CCeEEEEEEEECCCCC--EEEEeeCCEECCCCC-CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEE
Confidence 7889999999998777 899999998775432 23333321 12234789999999999999999999993 3345
Q ss_pred EEEEecCC
Q psy3475 162 VVHVLNGK 169 (207)
Q Consensus 162 ~~~v~~~~ 169 (207)
.|.|...|
T Consensus 78 ~L~V~~~P 85 (88)
T cd05735 78 QLTVQEPP 85 (88)
T ss_pred EEEEeCCC
Confidence 56555443
No 17
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.46 E-value=2.4e-12 Score=79.96 Aligned_cols=82 Identities=28% Similarity=0.468 Sum_probs=64.6
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
||.++..+....+..|+.+.|.|.+.+.|.| .+.|++++..+....+ +.... ......|.|.++..+|+|.|+|
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p--~v~W~k~g~~l~~~~~--~~~~~--~~~~~~L~i~~~~~~D~G~Y~C 76 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAP--TVTWMREGQIIVSSQR--HQITS--TEYKSTFEISKVQMSDEGNYTV 76 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCC--EEEEEECCEECCCCCc--EEEEE--cCCeeEEEECCCCcccCEeEEE
Confidence 4556666778889999999999999999988 8999999887654333 22221 1235789999999999999999
Q ss_pred EeecCCCC
Q psy3475 152 APSSSDGA 159 (207)
Q Consensus 152 ~~~n~~~~ 159 (207)
.+.|..+.
T Consensus 77 ~a~N~~G~ 84 (92)
T cd05747 77 VVENSEGK 84 (92)
T ss_pred EEEcCCCC
Confidence 99998544
No 18
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.45 E-value=2.1e-12 Score=78.88 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=55.6
Q ss_pred CcEEEEEEEeeCCCCCcEEEEEeCCEEEEecC-CCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC---eEEE
Q psy3475 88 SDINLTCVVLETPDPPSFIYWYRGANVVNYSQ-RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA---SVVV 163 (207)
Q Consensus 88 ~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~---~~~~ 163 (207)
+++.|.|.+.+.|.|...+.|++++..+.... ..++..... ....+.|.|.+++..|+|.|+|.|.|..+. +..|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEV-KETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEe-cceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence 46899999999998876789999998876532 222211110 113468999999999999999999998333 3444
Q ss_pred EEe
Q psy3475 164 HVL 166 (207)
Q Consensus 164 ~v~ 166 (207)
.|.
T Consensus 80 ~V~ 82 (85)
T cd05854 80 VVR 82 (85)
T ss_pred EEE
Confidence 444
No 19
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.44 E-value=2.1e-12 Score=79.02 Aligned_cols=74 Identities=23% Similarity=0.416 Sum_probs=59.0
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
.+.+..|+.+.|.|.+.|.|.| .+.|++++..+..... ++.... ....+.|.|..+..+|+|.|+|.|.|..+.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P--~v~W~k~~~~i~~~~~-r~~~~~--~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~ 77 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAP--TVTWSRGDKAFTETEG-RVRVES--YKDLSSFVIEGAEREDEGVYTITVTNPVGE 77 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCC--eEEEEECCEECccCCC-eEEEEE--cCCeEEEEECCCccCcCEEEEEEEEeCCCc
Confidence 4567789999999999999989 9999999998865422 333322 123578999999999999999999999554
No 20
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.44 E-value=2.8e-12 Score=79.34 Aligned_cols=78 Identities=28% Similarity=0.558 Sum_probs=64.2
Q ss_pred ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..+.+ +..... .....|.|.++..+|.|.|+|.+
T Consensus 2 ~~~~~~~~~~v~~G~~~~l~c~~~~~p~~--~v~W~~~~~~l~~~~~--~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~~ 75 (90)
T PF07679_consen 2 VFTKKPKDVTVKEGESVTLECEVSGNPPP--TVTWYKNGRPLTSSQR--YQIESD--GGSSSLTIKNVTREDAGTYTCVA 75 (90)
T ss_dssp EEEEESSEEEEETTSEEEEEEEEEESSSS--EEEEEETTEEEESSSS--EEEEEE--TTEEEEEESSESGGGSEEEEEEE
T ss_pred EEEEecCCEEEeCCCEEEEEEEEEeCCCC--cccccccccceeeeee--eeeecc--cceeEEccCCCChhhCEEEEEEE
Confidence 34556778889999999999999998777 9999999999887554 333322 26789999999999999999999
Q ss_pred ecCC
Q psy3475 154 SSSD 157 (207)
Q Consensus 154 ~n~~ 157 (207)
.|..
T Consensus 76 ~n~~ 79 (90)
T PF07679_consen 76 SNSS 79 (90)
T ss_dssp EETT
T ss_pred EECC
Confidence 9983
No 21
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.42 E-value=2.9e-12 Score=80.59 Aligned_cols=76 Identities=24% Similarity=0.415 Sum_probs=57.6
Q ss_pred cceEEecCCcEEEEEEEee-CCCCCcEEEEEeCCEEEEecCCCceEEEEe--cccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 80 SELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTE--KQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
..+.+..|+.+.|.|.+.+ .|.| .+.|+++|..+...... .....+ .....+.|.|..+..+|+|.|+|.|.|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p--~v~W~Kdg~~i~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~ 87 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPP--HINWTYDNRTLTNKLTE-IVTSENESEYRYVSELKLVRLKESEAGTYTFLASNS 87 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCC--ccEEEeCCeeCCCCcce-eEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECC
Confidence 4567788999999999999 7777 89999999988743221 111110 0123578999999999999999999999
Q ss_pred CC
Q psy3475 157 DG 158 (207)
Q Consensus 157 ~~ 158 (207)
.+
T Consensus 88 ~G 89 (101)
T cd04975 88 DA 89 (101)
T ss_pred Cc
Confidence 44
No 22
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.41 E-value=4.6e-12 Score=75.87 Aligned_cols=72 Identities=25% Similarity=0.450 Sum_probs=55.7
Q ss_pred EecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeec
Q psy3475 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155 (207)
Q Consensus 76 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n 155 (207)
...|....+..|+.++|.|.+.+.|.+. .+.|++++..+.. ....|.|.++ .+|+|.|+|.+.|
T Consensus 4 ~~~P~~~~v~~G~~V~L~C~~~~~p~~~-~~~W~kng~~l~~--------------~~~~l~i~~~-~~dsG~Y~C~a~~ 67 (78)
T cd05752 4 SLDPPWTTIFQGEKVTLTCNGFNSPEQN-STQWYHNGKLLET--------------TTNSYRIRAA-NNDSGEYRCQTQG 67 (78)
T ss_pred EeCCCCeEeeCCCCEEEEEeCCCCCCCc-cEEEEECCEEeec--------------cCCeEEEeec-ccCCEEeEEECCC
Confidence 3456677888999999999999876543 5899999987732 2347889899 9999999999998
Q ss_pred C-CCCeEEE
Q psy3475 156 S-DGASVVV 163 (207)
Q Consensus 156 ~-~~~~~~~ 163 (207)
. .+..+.+
T Consensus 68 ~~~S~~v~l 76 (78)
T cd05752 68 SSLSDPVHL 76 (78)
T ss_pred CcCCCCEEE
Confidence 7 3333443
No 23
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.41 E-value=1e-12 Score=78.24 Aligned_cols=65 Identities=26% Similarity=0.578 Sum_probs=52.4
Q ss_pred cCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+|+.+.|.|.+.+.|.| .+.|++++..+....+ .... ....|.|.+++.+|.|.|+|.|.|..+.
T Consensus 1 eG~~v~l~C~~~g~P~p--~i~W~k~g~~~~~~~~--~~~~-----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 65 (74)
T cd05745 1 EGQTVDFLCEAQGYPQP--VIAWTKGGSQLSVDRR--HLVL-----SSGTLRISRVALHDQGQYECQAVNIVGS 65 (74)
T ss_pred CCCeEEEEeECCEecCC--EEEEEECCEECCCCCC--eEEc-----cCCeEEEeeCCHHhCEEEEEEEEeCCCc
Confidence 48899999999999988 8999999987754322 2221 2358999999999999999999998443
No 24
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.40 E-value=1.7e-11 Score=77.09 Aligned_cols=83 Identities=25% Similarity=0.388 Sum_probs=61.3
Q ss_pred EecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec--ccceEEEEEEeccc-CCCeEEEEE
Q psy3475 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK--QTRTSRLVISKAVT-SDSGNYTCA 152 (207)
Q Consensus 76 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~-~d~g~Y~C~ 152 (207)
+..+....+..|+.+.|.|.+.+.|.|. .+.|++++..+......++.+.... ....+.|.|.++.. +|.|.|+|.
T Consensus 5 i~~~~~~~~~~G~~v~L~C~~~g~P~P~-~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~ 83 (98)
T cd05758 5 ITSEATQYAILGDKGRVECFIFSTPPPD-RIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCT 83 (98)
T ss_pred EcCCCcEEEeCCCcEEEEEEEcccCCCC-EeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEE
Confidence 3445566788999999999999988773 5899999988765443344444321 12336899999998 458999999
Q ss_pred eecCCCC
Q psy3475 153 PSSSDGA 159 (207)
Q Consensus 153 ~~n~~~~ 159 (207)
|.|..+.
T Consensus 84 A~N~~G~ 90 (98)
T cd05758 84 AWNSFGS 90 (98)
T ss_pred EEcCCCc
Confidence 9998544
No 25
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.40 E-value=8.2e-12 Score=77.47 Aligned_cols=75 Identities=31% Similarity=0.563 Sum_probs=58.1
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
|..+.+.+|+.+.|.|.+.+.|.| .+.|++++..+..... +..... ......|.|.+++.+|+|.|+|.+.|..+
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p--~i~W~k~~~~~~~~~~--~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 82 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDP--EVIWFKNDQDIELSEH--YSVKLE-QGKYASLTIKGVTSEDSGKYSINVKNKYG 82 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCC--eEEEEECCEECCCCCC--EEEEEc-CCCEEEEEECCCChhhCEEEEEEEEeCCC
Confidence 556778899999999999998888 8999999887654432 222221 12235799999999999999999999833
No 26
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.40 E-value=6e-12 Score=76.98 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=54.7
Q ss_pred CcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCC-CceEEEEecccceEEEEEEecccCCCeEEEEEeecCC---CCeEEE
Q psy3475 88 SDINLTCVVLETPDPPSFIYWYRGANVVNYSQR-GGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD---GASVVV 163 (207)
Q Consensus 88 ~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~---~~~~~~ 163 (207)
+.+.|.|.+.+.|.|...+.|+++|..+..... ..+.... .......|.|.+++..|+|.|+|.|.|.. .+...|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVG-GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEe-cccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEE
Confidence 468899999999888667899999998765322 1111110 01234689999999999999999999973 333444
Q ss_pred EEe
Q psy3475 164 HVL 166 (207)
Q Consensus 164 ~v~ 166 (207)
.|.
T Consensus 80 ~V~ 82 (85)
T cd04970 80 IVR 82 (85)
T ss_pred EEE
Confidence 444
No 27
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.39 E-value=1.8e-11 Score=76.19 Aligned_cols=87 Identities=23% Similarity=0.345 Sum_probs=65.7
Q ss_pred eEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec--ccceEEEEEEecccCC-CeEEEE
Q psy3475 75 KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK--QTRTSRLVISKAVTSD-SGNYTC 151 (207)
Q Consensus 75 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d-~g~Y~C 151 (207)
.+.....+.+..|+.+.|.|.+.+.|.|. .|.|.+++..+......++.+.... ....+.|.|.++...| .|.|.|
T Consensus 4 ~i~~~~s~~~~~G~~~~L~C~~~s~P~P~-~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C 82 (98)
T cd05898 4 IISSEQVQYAVRGERGKVKCFIGSTPPPD-RIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNC 82 (98)
T ss_pred EEecCceEEEeCCCcEEEEEEEccCCCCc-EEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEE
Confidence 34556677888999999999999888776 7889888877765544555555432 4467889999998766 789999
Q ss_pred EeecCCCCeEE
Q psy3475 152 APSSSDGASVV 162 (207)
Q Consensus 152 ~~~n~~~~~~~ 162 (207)
.|.|..+....
T Consensus 83 ~a~N~~G~d~~ 93 (98)
T cd05898 83 TAWNSFGSGTA 93 (98)
T ss_pred EEEeCCccceE
Confidence 99999555443
No 28
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.38 E-value=2.3e-12 Score=76.30 Aligned_cols=64 Identities=25% Similarity=0.520 Sum_probs=51.4
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
|+.+.|.|.+.+.|.| .+.|++++..+.... ++... ....|.|.+++.+|.|.|+|.|.|..+.
T Consensus 1 G~~~~l~C~~~g~P~p--~v~W~k~~~~l~~~~--r~~~~-----~~g~L~I~~v~~~D~G~Y~C~A~N~~G~ 64 (73)
T cd05852 1 GGRVIIECKPKAAPKP--KFSWSKGTELLVNNS--RISIW-----DDGSLEILNITKLDEGSYTCFAENNRGK 64 (73)
T ss_pred CCeEEEEEecceeCCC--EEEEEeCCEecccCC--CEEEc-----CCCEEEECcCChhHCEEEEEEEECCCCc
Confidence 6789999999999888 899999988765433 33332 2357999999999999999999998443
No 29
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.38 E-value=4.6e-12 Score=75.71 Aligned_cols=66 Identities=24% Similarity=0.405 Sum_probs=51.2
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
|+.+.|.|.+.+.|.| .+.|+++|..+........... ....|.|.+++..|.|.|.|.|.|..+.
T Consensus 1 g~~~~l~C~a~G~P~P--~i~W~k~g~~i~~~~~~~~~~~-----~~~~l~i~~v~~~D~G~Y~C~A~N~~G~ 66 (76)
T cd05868 1 GEDGTLICRANGNPKP--SISWLTNGVPIEIAPTDPSRKV-----DGDTIIFSKVQERSSAVYQCNASNEYGY 66 (76)
T ss_pred CCCEEEEEEeeEeCCC--eEEEEECCEEccccCCCceEEe-----cCCEEEECCCCHhhCEEEEEEEEcCCCE
Confidence 6789999999999988 8999999998864322111111 2347889999999999999999998443
No 30
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.38 E-value=7.3e-12 Score=78.29 Aligned_cols=72 Identities=19% Similarity=0.382 Sum_probs=56.3
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
...+..|+.+.|.|.+.+.|.| .+.|++++..+.... .++... ...+.|.|.++..+|.|.|+|.|.|..+.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p--~v~W~k~g~~~~~~~-~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 83 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEP--TMTWTKDGEPIESGE-EKYSFN----EDGSEMTILDVDKLDEAEYTCIAENKAGE 83 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCC--EEEEEECCEECcCCC-CEEEEe----CCCCEEEECCCChhhCEEEEEEEEcCCCe
Confidence 4467889999999999999888 899999998875441 122211 13457999999999999999999999443
No 31
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.38 E-value=5.2e-12 Score=77.80 Aligned_cols=76 Identities=25% Similarity=0.455 Sum_probs=58.6
Q ss_pred ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
.+...+....+..|+.+.|.|.+.+.|.| .+.|++++..+..... .. .....|.|.+++.+|+|.|+|.+
T Consensus 3 ~~~~~p~~~~~~~g~~v~l~C~~~g~P~p--~v~W~k~~~~~~~~~~--~~------~~~~~L~i~~v~~~D~G~Y~C~a 72 (88)
T cd04968 3 IIVVFPKDTYALKGQNVTLECFALGNPVP--QIKWRKVDGSMPSSAE--IS------MSGAVLKIPNIQFEDEGTYECEA 72 (88)
T ss_pred cEEECCCceEEeCCCcEEEEEEeeEeCCC--EEEEEECCCcCCCccE--EE------EeCCEEEECCCCcccCEEEEEEE
Confidence 34455677778899999999999999888 8999997765433211 11 12458999999999999999999
Q ss_pred ecCCCC
Q psy3475 154 SSSDGA 159 (207)
Q Consensus 154 ~n~~~~ 159 (207)
.|..+.
T Consensus 73 ~N~~G~ 78 (88)
T cd04968 73 ENIKGK 78 (88)
T ss_pred EECCCc
Confidence 998444
No 32
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.38 E-value=1.7e-11 Score=77.03 Aligned_cols=79 Identities=29% Similarity=0.389 Sum_probs=58.0
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe--CCEEEEec---CCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR--GANVVNYS---QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~--~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
..+.+..+..|+.+.|.|.+.+.|.| .+.|++ ++..+... ...++.... ......|.|.+++.+|+|.|+|
T Consensus 6 ~~~~~~~~~~G~~v~l~C~~~G~P~p--~i~W~k~~~g~~~~~~~~~~~~r~~v~~--~~~~~~L~I~~v~~~D~G~Y~C 81 (98)
T cd05870 6 IQLKNETTVENGAATLSCKAEGEPIP--EITWKRASDGHTFSEGDKSPDGRIEVKG--QHGESSLHIKDVKLSDSGRYDC 81 (98)
T ss_pred EeeccEEEcCCCcEEEEEecccCCCC--eEEEEECCCCceeccCCcCcCceEEEee--cCCeeEEEEeeCCcCCCEEEEE
Confidence 34567788899999999999999888 899998 44443321 122333321 1234689999999999999999
Q ss_pred EeecCCCC
Q psy3475 152 APSSSDGA 159 (207)
Q Consensus 152 ~~~n~~~~ 159 (207)
.|.|..+.
T Consensus 82 ~A~N~~G~ 89 (98)
T cd05870 82 EAASRIGG 89 (98)
T ss_pred EEeccCCc
Confidence 99998444
No 33
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.37 E-value=2.6e-12 Score=74.39 Aligned_cols=55 Identities=22% Similarity=0.417 Sum_probs=46.9
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+.|.|.+.+.|.| .+.|+++|..+.... ....|.|.++..+|+|.|+|.|.|..+
T Consensus 1 ~~l~c~v~g~P~P--~v~W~kdg~~l~~~~------------~~~~L~i~~v~~~D~G~YtC~a~N~~g 55 (67)
T cd05863 1 VKLPVKVAAYPPP--EFQWYKDGKLISGKH------------SQHSLQIKDVTEASAGTYTLVLWNSAA 55 (67)
T ss_pred CEEEEEEEEeCCC--EEEEEECCEECcccC------------CcCEEEECCCCHHHCEEEEEEEEECCc
Confidence 4689999999999 899999999885321 245899999999999999999999844
No 34
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.37 E-value=1.7e-11 Score=76.95 Aligned_cols=82 Identities=24% Similarity=0.409 Sum_probs=57.5
Q ss_pred eEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecC---CCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 75 KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQ---RGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 75 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+...+.......|+.+.|.|.+.|.|.| .+.|++++..+.... ..++.... ....+.|.|.++..+|.|.|+|
T Consensus 5 i~~~~~~~~~~~g~~v~l~C~~~G~P~P--~v~W~~~~~~~~~~~~~~~~~~~v~~--~~~~~~L~I~~v~~~D~G~Y~C 80 (97)
T cd05869 5 ITYVENQTAMELEEQITLTCEASGDPIP--SITWRTSTRNISSEEKTLDGHIVVRS--HARVSSLTLKYIQYTDAGEYLC 80 (97)
T ss_pred EEEccCceEEEcCCCEEEEEEeeEeCCC--EEEEEECCccccCCccccCccEEEEc--CccEEEEEEecCccCcCEEEEE
Confidence 3333444444558999999999999888 899999887654321 11222211 1234689999999999999999
Q ss_pred EeecCCCCe
Q psy3475 152 APSSSDGAS 160 (207)
Q Consensus 152 ~~~n~~~~~ 160 (207)
.|.|..+..
T Consensus 81 ~A~N~~G~~ 89 (97)
T cd05869 81 TASNTIGQD 89 (97)
T ss_pred EEecCCCCe
Confidence 999995443
No 35
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.37 E-value=2.6e-11 Score=74.98 Aligned_cols=76 Identities=17% Similarity=0.333 Sum_probs=58.4
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
++....+..|+.+.|.|.+.|.|.| .+.|++++..+...... . .........|.|.++..+|.|.|+|.|.|..
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p--~v~W~~~g~~~~~~~~~--~--~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~ 79 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLP--KVEWIIAGLIVIQTRTD--T--LETTVDIYNLQLSNITSETQTTVTCTAENPV 79 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCC--eEEEEECCEEccCCccE--E--EEecCCEEEEEEecCCcccCEEEEEEEECCC
Confidence 3455557899999999999999888 99999999876543221 1 1112245689999999999999999999995
Q ss_pred CC
Q psy3475 158 GA 159 (207)
Q Consensus 158 ~~ 159 (207)
+.
T Consensus 80 G~ 81 (90)
T cd04972 80 GQ 81 (90)
T ss_pred Cc
Confidence 54
No 36
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.37 E-value=1.4e-11 Score=77.60 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=56.6
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecC---CCceEEEEecccceEEEEE--EecccCCCe
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQ---RGGISVVTEKQTRTSRLVI--SKAVTSDSG 147 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i--~~~~~~d~g 147 (207)
|.+...+....+..|+.+.|.|.+.+.|.| .+.|+++|..+.... ..+.....+ .....+.+ ..+..+|+|
T Consensus 2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p--~i~W~k~g~~l~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~D~G 77 (100)
T cd07693 2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTP--TIQWLKNGQPLETDKDDPRSHRIVLPS--GSLFFLRVVHGRKGRSDEG 77 (100)
T ss_pred CeEEecCceeEEcCCCeEEEEeeCCcCCCC--EEEEEECCEECccccCCCCcceEEecC--CcEEEEEeeccCCCcCcCE
Confidence 455566777888899999999999999888 899999998876521 111111111 11122222 233689999
Q ss_pred EEEEEeecCCCC
Q psy3475 148 NYTCAPSSSDGA 159 (207)
Q Consensus 148 ~Y~C~~~n~~~~ 159 (207)
.|+|.+.|..+.
T Consensus 78 ~Y~C~a~N~~G~ 89 (100)
T cd07693 78 VYVCVAHNSLGE 89 (100)
T ss_pred EEEEEEEccccc
Confidence 999999998443
No 37
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.36 E-value=1.8e-11 Score=72.73 Aligned_cols=67 Identities=27% Similarity=0.577 Sum_probs=51.4
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCe
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~ 160 (207)
+.|.|.+.|.|.| .+.|++++..+..... ++....+. ....+|.|.++..+|+|.|+|.|.|..+..
T Consensus 1 v~l~C~v~G~P~P--~i~W~k~~~~i~~~~~-r~~~~~~~-~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~ 67 (75)
T cd05892 1 VKLECQISAIPPP--KIFWKRNNEMVQYNTD-RISLYQDN-SGRVTLLIKNVNKKDAGWYTVSAVNEAGVA 67 (75)
T ss_pred CEEEEEEEecCCC--eEEEEECCEECcCCCC-eEEEEEcC-CCcEEEEECCCChhhCEEEEEEEEcCcCeE
Confidence 4799999999999 9999999998865332 34443221 122479999999999999999999985543
No 38
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.36 E-value=8.7e-12 Score=74.58 Aligned_cols=65 Identities=23% Similarity=0.449 Sum_probs=51.4
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCC-CceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR-GGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
|+.+.|.|.+.+.|.| .+.|+++|..+..... .+... ....|.|.+++.+|+|.|.|.+.|..+.
T Consensus 1 G~~v~l~C~~~G~P~p--~i~W~k~g~~i~~~~~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 66 (76)
T cd05867 1 GETARLDCQVEGIPTP--NITWSINGAPIEGTDPDPRRHV------SSGALILTDVQPSDTAVYQCEARNRHGN 66 (76)
T ss_pred CCeEEEEEEeeEeCCC--eEEEEECCEECCCCCCCceEEe------eCCEEEECCCChhhCEEEEEEEECCCCe
Confidence 6789999999999888 8999999988765322 12211 2357999999999999999999998443
No 39
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.35 E-value=5.5e-12 Score=77.12 Aligned_cols=73 Identities=27% Similarity=0.456 Sum_probs=58.6
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
..|.+..+..|+.+.|.|.+.+.|.| .+.|++++..+....+ +.. ....|.|.++..+|+|.|+|.|.|.
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p--~v~W~k~g~~~~~~~~--~~~------~~~~L~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRP--AYRWLKNGQPLASENR--IEV------EAGDLRITKLSLSDSGMYQCVAENK 73 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCC--EEEEEECCEECCCCCe--EEE------eCCEEEEeeCCHHHCEEEEEEEECC
Confidence 34666778899999999999999988 8999999997754322 222 2347999999999999999999998
Q ss_pred CCC
Q psy3475 157 DGA 159 (207)
Q Consensus 157 ~~~ 159 (207)
.+.
T Consensus 74 ~G~ 76 (85)
T cd05728 74 HGT 76 (85)
T ss_pred CCe
Confidence 443
No 40
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.35 E-value=1.6e-11 Score=76.58 Aligned_cols=76 Identities=29% Similarity=0.390 Sum_probs=56.5
Q ss_pred cCcceEEecCCcEEEEEEEeeCCC-CCcEEEEEe-CCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeec
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPD-PPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n 155 (207)
.|....+..|+.+.|.|.+.+.|. | .+.|++ ++..+..... ++..... ....+.|.|.+++.+|+|.|+|.|.|
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p--~i~W~~~~g~~l~~~~~-r~~v~~~-~~~~~~L~I~~v~~~D~G~YtC~A~N 81 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDK--DISWFSPNGEKLTPNQQ-RISVVRN-DDYSSTLTIYNANIDDAGIYKCVVSN 81 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCC--EEEEECCCCcCccccCC-eEEEEeC-CCCceEEEEeccChhhCEEEEEEEEc
Confidence 355566888999999999999874 5 899997 7765543222 3332211 12347899999999999999999999
Q ss_pred CC
Q psy3475 156 SD 157 (207)
Q Consensus 156 ~~ 157 (207)
..
T Consensus 82 ~~ 83 (96)
T cd05865 82 ED 83 (96)
T ss_pred CC
Confidence 84
No 41
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.34 E-value=9.9e-12 Score=78.27 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=57.6
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEE--ecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVT--EKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
...+..|+.+.|.|.+.+.|.| .+.|+++|.++..+......... +.....+.|.|..+..+|+|.|+|.|.|..+
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P--~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g 89 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPP--QIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA 89 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCC--ceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence 4567789999999999999988 89999999998754321111000 0012346899999999999999999999943
Q ss_pred C
Q psy3475 159 A 159 (207)
Q Consensus 159 ~ 159 (207)
.
T Consensus 90 ~ 90 (101)
T cd05859 90 V 90 (101)
T ss_pred e
Confidence 3
No 42
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.34 E-value=2.1e-11 Score=76.39 Aligned_cols=78 Identities=27% Similarity=0.383 Sum_probs=57.8
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecC---CCceEEEEecccceEEEEEEecccCCCeEEEEEee
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQ---RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
.+.+..+.+|+.+.|.|.+.+.|.| .+.|++++..+.... ..++... .....+.|.|.+++.+|.|.|+|.+.
T Consensus 7 ~~~~~~~~~g~~v~l~C~~~g~p~p--~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~ 82 (96)
T cd05732 7 YLENQTAVELEQITLTCEAEGDPIP--EITWRRATRNFSEGDKSLDGRIVVR--GHARVSSLTLKDVQLTDAGRYDCEAS 82 (96)
T ss_pred ecCceeEecCCcEEEEEEEeEcCCC--cEEEEECCcccCCCCccccceEEEe--CCccEEEEEECcCCcCcCEEeEEEEE
Confidence 3456677899999999999999888 899999886554321 1122221 12245689999999999999999999
Q ss_pred cCCCC
Q psy3475 155 SSDGA 159 (207)
Q Consensus 155 n~~~~ 159 (207)
|..+.
T Consensus 83 N~~G~ 87 (96)
T cd05732 83 NRIGG 87 (96)
T ss_pred eCCCC
Confidence 99444
No 43
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.32 E-value=3.4e-11 Score=75.00 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=55.3
Q ss_pred eEecCcceEEe---cCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecc-cCCCeEEE
Q psy3475 75 KIIGNSELYIK---SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAV-TSDSGNYT 150 (207)
Q Consensus 75 ~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~ 150 (207)
++..|..+.+. .|+.+.|.|.+.|.|.| .+.|++++..+......++.. ....|.|.++. .+|.|.|.
T Consensus 4 f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P--~i~W~k~g~~l~~~~~~~~~~------~~g~L~i~~~~~~~D~G~Y~ 75 (94)
T cd05848 4 FVQEPDDAIFPTDSDEKKVILNCEARGNPVP--TYRWLRNGTEIDTESDYRYSL------IDGNLIISNPSEVKDSGRYQ 75 (94)
T ss_pred eEECCCcEEccCCCCCCEEEEEEEeeecCCC--EEEEEECCeECccCCCceEEe------eCCeEEEccCCccCcCEEEE
Confidence 34445554433 47899999999999988 899999998885433322221 12468888774 68999999
Q ss_pred EEeecCCCC
Q psy3475 151 CAPSSSDGA 159 (207)
Q Consensus 151 C~~~n~~~~ 159 (207)
|.|.|..+.
T Consensus 76 C~A~N~~G~ 84 (94)
T cd05848 76 CLATNSIGS 84 (94)
T ss_pred EEEEcCCCe
Confidence 999998543
No 44
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.32 E-value=2.5e-11 Score=72.93 Aligned_cols=66 Identities=32% Similarity=0.565 Sum_probs=51.9
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
|+.+.|.|.+.+.|.| .+.|++++..+.... ++..... .....|.|.++..+|.|.|+|.+.|..+
T Consensus 1 G~~v~l~C~~~g~P~p--~v~W~~~~~~~~~~~--~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 66 (78)
T cd05743 1 GETVEFTCVATGVPTP--IINWRLNWGHVPDSA--RVSITSE--GGYGTLTIRDVKESDQGAYTCEAINTRG 66 (78)
T ss_pred CCEEEEEEEEEEecCC--EEEEEECCeECCCCC--CEEEEEC--CCEEEEEECCCChHHCEEEEEEEEecCC
Confidence 6789999999999988 899999887765432 2333321 2346899999999999999999999843
No 45
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.31 E-value=1.6e-11 Score=73.41 Aligned_cols=66 Identities=21% Similarity=0.371 Sum_probs=51.7
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
|+.+.|.|.+.+.|.| .+.|++++..+....... .. ......|.|.+++.+|+|.|+|.|.|..+.
T Consensus 1 G~~~~l~C~~~g~P~p--~i~W~~~g~~~~~~~~~~-~~----~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~ 66 (76)
T cd04978 1 GETGRLDCEAEGIPQP--TITWRLNGVPIEELPPDP-RR----RVDGGTLILSNVQPNDTAVYQCNASNVHGY 66 (76)
T ss_pred CCeEEEEEEceeeCCC--EEEEEECCEECCCCCCcc-eE----EccCCEEEECCCChhhCEEEEEEEEccCCe
Confidence 6789999999999888 899999998876543211 11 123468999999999999999999998443
No 46
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.31 E-value=4.3e-11 Score=76.56 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=52.0
Q ss_pred cCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEE--EecccceEEEEEEecc-cCCCeEEEEEeecCCCC
Q psy3475 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV--TEKQTRTSRLVISKAV-TSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~n~~~~ 159 (207)
.|..+.|.|.+.+.|.+ .+.|++++..+..... ++... .......+.|.|.++. .+|.|.|+|.|.|..+.
T Consensus 22 ~g~~v~L~C~a~G~P~p--~i~W~k~g~~l~~~~~-r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~ 95 (109)
T cd05773 22 GSSDANLVCQAQGVPRV--QFRWAKNGVPLDLGNP-RYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE 95 (109)
T ss_pred CCCEEEEEEECcccCCC--EEEEEECCEECCCCCC-eEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc
Confidence 46789999999998887 8999999988754321 22211 1112234689999987 58999999999999433
No 47
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.30 E-value=2.4e-11 Score=72.23 Aligned_cols=67 Identities=24% Similarity=0.458 Sum_probs=50.4
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCe
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~ 160 (207)
+.|.|.+.|.|.| .+.|++++..+.... .++....+. .....|.|..+..+|+|.|+|.|.|..+..
T Consensus 1 v~l~C~v~G~P~P--~v~W~k~~~~l~~~~-~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 67 (75)
T cd05893 1 VRLECRVSGVPHP--QIFWKKENESLTHNT-DRVSMHQDN-CGYICLLIQGATKEDAGWYTVSAKNEAGIV 67 (75)
T ss_pred CEEEEEEeEecCC--EEEEEECCEECCCCC-CeEEEEEcC-CCEEEEEECCCCHHHCEEEEEEEEcCCCEE
Confidence 4799999999999 999999998876432 233333211 123469999999999999999999985443
No 48
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.29 E-value=5e-11 Score=71.24 Aligned_cols=65 Identities=17% Similarity=0.319 Sum_probs=49.1
Q ss_pred EEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEE-EecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 92 LTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV-TEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 92 l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
|.|.+.|.|.| .+.|+++|..+..+........ .+.......|.|..+..+|+|.|+|.|.|..+
T Consensus 3 i~~~v~G~P~P--ti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G 68 (79)
T cd05855 3 IPFTVKGNPKP--TLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYG 68 (79)
T ss_pred EEEEEeEeCCC--ceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCc
Confidence 78999999999 8999999999875543221111 11122346899999999999999999999944
No 49
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.29 E-value=1.2e-10 Score=72.45 Aligned_cols=77 Identities=19% Similarity=0.392 Sum_probs=54.7
Q ss_pred EecCcceEEec---CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecc-cCCCeEEEE
Q psy3475 76 IIGNSELYIKS---GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAV-TSDSGNYTC 151 (207)
Q Consensus 76 ~~~~~~~~~~~---g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C 151 (207)
...|....+.+ |+.+.|.|.+.+.|.| .+.|+++|..+......++... ...|.|.++. ..|.|.|.|
T Consensus 5 ~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p--~i~W~~~g~~l~~~~~~~~~~~------~g~L~I~~~~~~~D~G~Y~C 76 (94)
T cd05850 5 EEQPSSLLFPEGSPEEKVTLGCRARASPPA--TYRWKMNGTEIKFAPESRYTLV------AGNLVINNPQKARDAGSYQC 76 (94)
T ss_pred EECCCCEEecCCCCCCeEEEEeEceeCCCC--EEEEEECCEECccCCCceEEEE------CCeEEEccCCccCcCEEEEE
Confidence 33455554444 4679999999999888 8999999998864433222221 3468887755 589999999
Q ss_pred EeecCCCCe
Q psy3475 152 APSSSDGAS 160 (207)
Q Consensus 152 ~~~n~~~~~ 160 (207)
.|.|..+..
T Consensus 77 ~A~N~~G~~ 85 (94)
T cd05850 77 LAINRCGTV 85 (94)
T ss_pred EEEcCcCcE
Confidence 999985543
No 50
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.29 E-value=1.3e-11 Score=72.25 Aligned_cols=58 Identities=21% Similarity=0.448 Sum_probs=47.2
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+.|.|.+.|.|.| .+.|+++|..+..... + .....|.|.++..+|+|.|+|.+.|..+
T Consensus 1 ~~~~c~v~G~P~P--~v~W~k~g~~l~~~~~--~-------~~~~~L~I~~v~~~D~G~YtC~a~N~~G 58 (70)
T cd05864 1 VKIPVKYYGYPPP--EVKWYKNGQLIVLNHT--F-------KRGVHLTIYEVTEKDAGNYTVVLTNPIT 58 (70)
T ss_pred CEEEeEEEEeCCC--EEEEEECCEECCCCCE--E-------ccCCEEEECcCCHHHCEEEEEEEEECCC
Confidence 3689999999999 8999999998864321 1 1235799999999999999999999944
No 51
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.28 E-value=5.2e-11 Score=73.59 Aligned_cols=69 Identities=22% Similarity=0.431 Sum_probs=48.1
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeC----CEEEEecCCCceEEEEec-----ccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRG----ANVVNYSQRGGISVVTEK-----QTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
|+.+.|.|.+.+.|.| .+.|+++ +..+.............. ....+.|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~L~C~~~g~P~P--~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKVYSDAQP--HIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEEecCCCC--EEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 6789999999999988 8999984 333322211111111110 1123689999999999999999999983
No 52
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.28 E-value=1.6e-10 Score=71.64 Aligned_cols=73 Identities=29% Similarity=0.428 Sum_probs=54.5
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe-CCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.|....+..|+.+.|.|.+.+.| + .+.|++ ++..+....+ ..... .....+.|.|.+++.+|+|.|+|.+.|.
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~p-~--~i~W~~~~~~~~~~~~~--~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 79 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGEP-K--DISWFSPNGEKLVTQQQ--ISVVQ-NDDVRSTLTIYNANIEDAGIYKCVATDA 79 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEeeC-C--eEEEECCCCCEeccCCC--EEEEe-CCCCEEEEEEecCCcccCEEEEEEEEcC
Confidence 45567788999999999999974 4 799997 5655543222 22221 1234578999999999999999999998
No 53
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.28 E-value=5.5e-11 Score=71.22 Aligned_cols=62 Identities=27% Similarity=0.525 Sum_probs=48.0
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
++|.|.+.+.|.| .+.|+++|..+..... ++... .....|.|.++..+|+|.|.|.+.|..+
T Consensus 1 v~L~C~~~g~P~p--~v~W~k~g~~l~~~~~-~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 62 (77)
T cd05760 1 VTLRCHIDGHPRP--TYQWFRDGTPLSDGQG-NYSVS----SKERTLTLRSAGPDDSGLYYCCAHNAFG 62 (77)
T ss_pred CEEEEEeeecCCC--cEEEEECCEECCCCCc-cEEEe----CCCCEEEEeeCCcccCEEEEEEEEeCCC
Confidence 4799999999888 8999999988754322 22221 1235899999999999999999999833
No 54
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.28 E-value=4.2e-11 Score=71.17 Aligned_cols=63 Identities=30% Similarity=0.622 Sum_probs=49.0
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
++|.|.+.|.|.| .+.|++++..+......++... ....|.|.+++.+|+|.|+|.|.|..+.
T Consensus 1 a~l~C~~~G~P~p--~v~W~k~~~~~~~~~~~~~~~~-----~~g~L~i~~~~~~D~G~Y~C~a~N~~G~ 63 (74)
T cd05738 1 ATMLCAASGNPDP--EITWFKDFLPVDTTSNGRIKQL-----RSGALQIENSEESDQGKYECVATNSAGT 63 (74)
T ss_pred CEEEEEEeEecCC--EEEEEECCEECccCCCCCEEEc-----CCcEEEECCCChhhCEEEEEEEECCCCc
Confidence 3789999999988 9999999987764333333322 2346999999999999999999998443
No 55
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.28 E-value=2.2e-11 Score=72.20 Aligned_cols=64 Identities=31% Similarity=0.589 Sum_probs=51.0
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
|+.+.|.|.+.+.|.| .+.|++++..+....+ +... ....|.|.+++.+|.|.|+|.+.|..+.
T Consensus 1 G~~v~L~C~~~g~P~p--~v~W~k~~~~~~~~~~--~~~~-----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~ 64 (73)
T cd04969 1 GGDVIIECKPKAAPKP--TISWSKGTELLTNSSR--ICIW-----PDGSLEILNVTKSDEGKYTCFAENFFGK 64 (73)
T ss_pred CCeEEEEEeeeEcCCC--EEEEEECCEEcccCCC--EEEC-----CCCeEEEccCChhHCEEEEEEEECCCCc
Confidence 6789999999998887 8999999987754332 3322 2347999999999999999999998443
No 56
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.28 E-value=3.1e-11 Score=71.79 Aligned_cols=65 Identities=28% Similarity=0.500 Sum_probs=50.9
Q ss_pred cEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 89 DINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 89 ~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
.+.|.|.+.|.|.| .+.|++++..+....+ +.... ......|.|.++..+|+|.|+|.+.|..+.
T Consensus 1 ~~~l~c~~~G~P~p--~v~W~k~g~~l~~~~~--~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 65 (74)
T cd05748 1 SVRLEVPISGRPTP--TVTWSKDGKPLKLSGR--VQIET--TASSTSLVIKNAERSDSGKYTLTLKNPAGE 65 (74)
T ss_pred CEEEEeeEeeeCCC--eEEEEECCEEcCCCCe--EEEEE--CCCeEEEEECCCCcCcCEEEEEEEECCCcc
Confidence 36899999999999 8999999998744332 32222 224678999999999999999999998444
No 57
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.28 E-value=3.9e-11 Score=72.26 Aligned_cols=68 Identities=25% Similarity=0.442 Sum_probs=53.2
Q ss_pred cceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
....+..|+.+.|.|.+.+. .+ .+.|+++|..+....+ +.. ....|.|.+++.+|+|.|+|.+.|..+
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~--~v~W~k~g~~l~~~~~--~~~------~~~~L~I~~~~~~DsG~Y~C~a~n~~g 69 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQ--SINWTKDGVQLGENNR--TRI------TGEEVQIKDAVPRDSGLYACVTSSPSG 69 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-Cc--eEEEeeCCcCCCCCce--EEE------eCCEEEECCCChhhCEEEEEEEeCCCC
Confidence 44567789999999999985 44 7999999988754432 222 124799999999999999999999843
No 58
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.27 E-value=4e-11 Score=73.31 Aligned_cols=71 Identities=24% Similarity=0.521 Sum_probs=54.4
Q ss_pred EEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCC-ceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRG-GISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 83 ~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
.+..|+.+.|.|.+.+.|.| .+.|++++..+...... .+... .....|.|.++..+|+|.|+|.+.|..+.
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p--~i~W~k~g~~l~~~~~~~~~~~~----~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTP--TMRWLKNGKEFKQEHRIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGS 76 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCC--EEEEEECCEECCCCCceeeeEEe----CCceEEEEccCCcccCEEEEEEEEeCCCE
Confidence 45679999999999998877 89999999887654321 11111 13457899999999999999999998443
No 59
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.27 E-value=2.6e-11 Score=71.48 Aligned_cols=62 Identities=27% Similarity=0.528 Sum_probs=48.2
Q ss_pred cEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 89 DINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 89 ~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
.+.|.|.+.|.|.| .+.|++++..+..... +.... ...|.|.+++.+|+|.|+|.|.|..+.
T Consensus 1 ~v~l~C~~~G~P~p--~v~W~k~g~~~~~~~~--~~~~~-----~~~l~i~~v~~~D~G~Y~C~A~N~~G~ 62 (71)
T cd05723 1 DVIFECEVTGKPTP--TVKWVKNGDMVIPSDY--FKIVK-----EHNLQVLGLVKSDEGFYQCIAENDVGN 62 (71)
T ss_pred CEEEEEEEEEeCCC--EEEEEECCeECCCCCC--EEEEe-----cCCEEEEcCCcccCEEEEEEEEcCCCE
Confidence 36899999999988 8999999987754332 23221 235788899999999999999998444
No 60
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.27 E-value=2.5e-11 Score=74.99 Aligned_cols=71 Identities=17% Similarity=0.389 Sum_probs=55.6
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+.++.+.+|+.+.|.|.+.+. .| .+.|++++..+... ++... .....|.|.+++.+|+|.|.|.|.|..+
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p--~i~W~kng~~l~~~---~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 79 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-AT--YIWWVNNGSLLVPP---RLQLS----NDNRTLTFNNVTRSDTGHYQCEASNEVS 79 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CC--EEEEEECCEECCCC---CEEEe----CCCCEEEECcCChhhCEEEEEEEEcCCC
Confidence 345678899999999999998 77 89999999876432 22221 1335799999999999999999999954
Q ss_pred C
Q psy3475 159 A 159 (207)
Q Consensus 159 ~ 159 (207)
.
T Consensus 80 ~ 80 (91)
T cd05740 80 N 80 (91)
T ss_pred C
Confidence 3
No 61
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.27 E-value=6.4e-11 Score=72.54 Aligned_cols=73 Identities=25% Similarity=0.510 Sum_probs=56.4
Q ss_pred CcceEEecCCcEEEEEEE-eeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 79 NSELYIKSGSDINLTCVV-LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~-~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
|....+..|+.+.|.|.+ .+.|.| .+.|++++..+..... ++... ....|.|.+++.+|+|.|+|.+.|..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p--~i~W~k~g~~~~~~~~-~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~ 74 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEP--TVSWRKDGQPLNLDNE-RVRIV-----DDGNLLIAEARKSDEGTYKCVATNMV 74 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCC--EEEEEECCEECCCCCC-CEEEc-----cCCEEEEeECCcccCEEEEEEEEecc
Confidence 456677899999999998 677777 8999999988765322 22221 23579999999999999999999984
Q ss_pred CC
Q psy3475 158 GA 159 (207)
Q Consensus 158 ~~ 159 (207)
+.
T Consensus 75 G~ 76 (86)
T cd05724 75 GE 76 (86)
T ss_pred Cc
Confidence 43
No 62
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.27 E-value=2.9e-11 Score=70.86 Aligned_cols=62 Identities=23% Similarity=0.497 Sum_probs=48.9
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCe
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~ 160 (207)
+.|.|.+.+.|.| .+.|++++..+....+ +... ....|.|.++..+|+|.|+|.|.|..+..
T Consensus 1 v~L~C~~~g~P~p--~i~W~k~g~~~~~~~~--~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 62 (69)
T cd05746 1 VQIPCSAQGDPEP--TITWNKDGVQVTESGK--FHIS-----PEGYLAIRDVGVADQGRYECVARNTIGYA 62 (69)
T ss_pred CEeEecceEeCCC--EEEEEECCEECCCCCC--EEEC-----CCCEEEECcCChhhCEEEEEEEECCCCcE
Confidence 4799999999988 8999999987754432 2221 24589999999999999999999985443
No 63
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.27 E-value=4.7e-11 Score=71.13 Aligned_cols=66 Identities=27% Similarity=0.549 Sum_probs=50.3
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+.|.|.+.+.|.| .+.|++++..+..... ++....+ ......|.|..++.+|+|.|+|.+.|..+.
T Consensus 1 v~L~C~v~G~P~P--~v~W~k~~~~i~~~~~-r~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 66 (75)
T cd05744 1 VRLECRVSAIPPP--QIFWKKNNEMLTYNTD-RISLYQD-NCGRICLLIQNANKEDAGWYTVSAVNEAGV 66 (75)
T ss_pred CEEEEEEeecCCC--eEEEEECCEECCCCCC-cEEEEEc-CCCeEEEEECCCCcccCEEEEEEEEcCCCc
Confidence 4799999999998 8999999988864322 3333321 122347999999999999999999998544
No 64
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.26 E-value=3e-10 Score=70.18 Aligned_cols=76 Identities=30% Similarity=0.507 Sum_probs=56.2
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe-CCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeec
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n 155 (207)
..+....+..|+.+.|.|.+.|.|. .+.|++ ++..+.... ++....+ .....|.|..+..+|+|.|+|.|.|
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~---~v~W~k~~g~~~~~~~--r~~~~~~--g~~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE---SIDWYNPQGEKIVSSQ--RVVVQKE--GVRSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC---eEEEEeCCCeEecCCC--CEEEEeC--CCeeEEEEecCChHHCEEEEEEEEc
Confidence 3455667889999999999999653 689997 566654332 3333321 2346899999999999999999999
Q ss_pred CCCC
Q psy3475 156 SDGA 159 (207)
Q Consensus 156 ~~~~ 159 (207)
..+.
T Consensus 78 ~~G~ 81 (92)
T cd05866 78 AKGQ 81 (92)
T ss_pred CCCc
Confidence 8544
No 65
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.26 E-value=1.1e-10 Score=72.18 Aligned_cols=69 Identities=23% Similarity=0.456 Sum_probs=47.3
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCC----EEEEecCCCceEEEEe---c--ccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGA----NVVNYSQRGGISVVTE---K--QTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~----~~~~~~~~~~~~~~~~---~--~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
|+.+.|.|.+.+.|.| .|.|++++ ..+............. . ......|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~l~C~v~g~P~P--~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd04974 1 GSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI 78 (90)
T ss_pred CCcEEEEEEEeCCCCC--eEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence 6789999999999998 89999853 2222111111111110 0 1233579999999999999999999983
No 66
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.26 E-value=1.1e-10 Score=70.45 Aligned_cols=67 Identities=24% Similarity=0.360 Sum_probs=49.6
Q ss_pred EEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEe---cccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 91 NLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTE---KQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 91 ~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
.|.|.+.|.|.| .+.|+++|..+..+.......... .......|.|.+++.+|+|.|+|.|.|..+.
T Consensus 2 ~i~~~v~G~P~P--~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~ 71 (81)
T cd04971 2 CIPFTVRGNPKP--TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQ 71 (81)
T ss_pred eEEEEeEeeCCC--cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCC
Confidence 378999999999 899999999887654321111111 1123567999999999999999999999444
No 67
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.25 E-value=6.5e-11 Score=73.18 Aligned_cols=74 Identities=24% Similarity=0.499 Sum_probs=52.8
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEe------cCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC-
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNY------SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA- 159 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~- 159 (207)
|+.+.|.|.+.+.|.| .+.|++++..+.. ....++... ....|.|.+++.+|+|.|+|.+.|..+.
T Consensus 1 G~~v~L~C~~~g~P~p--~v~W~k~g~~~~~~~~~~~~~~~r~~v~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 73 (90)
T cd05726 1 GRTVTFQCEATGNPQP--AIFWQKEGSQNLLFSYQPPQSSSRFSVS-----QTGDLTITNVQRSDVGYYICQTLNVAGSI 73 (90)
T ss_pred CCEEEEEEECCccCCC--EEEEEeCCCcceeecccCCCCCCeEEEC-----CCCeEEEeeCChhhCEEEEEEEEcCCCce
Confidence 6789999999998888 8999997764321 111223222 2347999999999999999999998433
Q ss_pred --eEEEEEec
Q psy3475 160 --SVVVHVLN 167 (207)
Q Consensus 160 --~~~~~v~~ 167 (207)
.+.|.|..
T Consensus 74 ~~~~~l~V~~ 83 (90)
T cd05726 74 LTKAYLEVTD 83 (90)
T ss_pred EEEEEEEEee
Confidence 44555554
No 68
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.25 E-value=2.1e-10 Score=71.61 Aligned_cols=76 Identities=21% Similarity=0.397 Sum_probs=56.3
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEec-----ccCCCeEEEE
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA-----VTSDSGNYTC 151 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~Y~C 151 (207)
..|....+..|+.+.|.|.+.+.|.| .+.|+++|..+......+.... ....+.|..+ ...|.|.|.|
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P~p--~i~W~k~g~~l~~~~~~~~~~~-----~~~~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEPPP--KIEWKKDGVLLNLVSDERRQQL-----PNGSLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCCCC--EEEEEECCeECccccCcceEEc-----cCCeEEEeeeeccCCCCCcCEEEEE
Confidence 44666777889999999999999877 8999999998865433222222 1234556555 5789999999
Q ss_pred EeecC-CCC
Q psy3475 152 APSSS-DGA 159 (207)
Q Consensus 152 ~~~n~-~~~ 159 (207)
.+.|. .+.
T Consensus 77 ~a~N~~~G~ 85 (95)
T cd05722 77 VAQNDSLGS 85 (95)
T ss_pred EEECCccCc
Confidence 99998 554
No 69
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.23 E-value=3.7e-11 Score=70.76 Aligned_cols=59 Identities=25% Similarity=0.498 Sum_probs=47.7
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+.|.|.+.+.|.| .+.|+++|..+..... .. .....|.|.++..+|+|.|+|.+.|..+
T Consensus 1 ~~l~c~v~g~P~p--~v~W~k~g~~l~~~~~--~~------~~~~~L~I~~v~~~D~G~YtC~a~N~~g 59 (71)
T cd04976 1 VRLPVKVKAYPPP--EIQWYKNGKLISEKNR--TK------KSGHSLTIKDVTEEDAGNYTVVLTNKQA 59 (71)
T ss_pred CEEEeEEEEeCCC--EEEEEECCEECCCCCE--EE------cCCCEEEECcCCHHHCEEEEEEEEcCCc
Confidence 4689999999988 8999999998765421 11 1346899999999999999999999844
No 70
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.22 E-value=6.4e-11 Score=70.60 Aligned_cols=63 Identities=21% Similarity=0.474 Sum_probs=46.2
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEE-EecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVV-NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+.|.|.+.+.|.| .+.|++++... ......++.... ....|.|.+++.+|+|.|+|.|.|..+
T Consensus 1 a~l~C~~~G~P~P--~v~W~k~~~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~A~N~~G 64 (75)
T cd05763 1 ARLECAATGHPTP--QIAWQKDGGTDFPAARERRMHVMP----EDDVFFIVDVKIEDTGVYSCTAQNTAG 64 (75)
T ss_pred CEeEeecccccCC--EEEEEeCCCccCCcccccceEEec----CCCEEEEeeCCcccCEEEEEEEEcCCC
Confidence 3689999999988 89999987642 222222333221 235799999999999999999999833
No 71
>KOG4222|consensus
Probab=99.21 E-value=1e-10 Score=97.68 Aligned_cols=124 Identities=25% Similarity=0.438 Sum_probs=99.7
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec-CCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCC
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST-EPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETP 100 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~ 100 (207)
..|+.+..+.. +|.|..++..|.|.|.|.+.+ .+.+.....|+|+.+|.+...+....+..|..++|.|.+.+.|
T Consensus 268 ~~ry~i~~d~q----tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP 343 (1281)
T KOG4222|consen 268 RSRYSILDDTQ----TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNP 343 (1281)
T ss_pred ccceeeeeccc----cccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCC
Confidence 46777776544 899999999999999999997 5678889999999999988888888888899999999999999
Q ss_pred CCCcEEEEEeCCEE-EEe-----cCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 101 DPPSFIYWYRGANV-VNY-----SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 101 ~~~~~~~W~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.| .++|.+.+.. +-. ..+.+..+. ....|+|.+++..|.|.|.|...+.
T Consensus 344 ~P--avfW~keg~q~llf~~~p~~~~~r~svs-----~~g~L~it~v~~~d~g~Yvcq~~~~ 398 (1281)
T KOG4222|consen 344 PP--AVFWLKEGSQDLLFSASPPSSNGRGSVS-----PTGTLTITNVRQSDEGYYVCQTQTS 398 (1281)
T ss_pred Cc--ceEEeccCcceecccCCCCCcCccceec-----CCCCcccccccccccceEeeccccc
Confidence 99 8999986653 211 112222222 2348999999999999999997666
No 72
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.21 E-value=1.8e-10 Score=69.40 Aligned_cols=69 Identities=20% Similarity=0.529 Sum_probs=53.0
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
.|.++.+..|+.+.|.|.+.|.|.|. .|.|.++|..+..... ...+.|.|..+ .|+|.|.|.|.|..
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~-~I~W~k~g~~l~~~~~----------~~~s~L~i~~~--~d~g~Y~C~A~N~~ 70 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPV-EILWWQGGSPLGDPPA----------PSPSVLNVPGL--NETSKFSCEAHNAK 70 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCe-EEEEEECCEECCCCCC----------CCCCEEEEccc--cCCeEEEEEEEecc
Confidence 46678889999999999999998772 3999999998753111 12357788766 47899999999985
Q ss_pred CC
Q psy3475 158 GA 159 (207)
Q Consensus 158 ~~ 159 (207)
+.
T Consensus 71 G~ 72 (81)
T cd05749 71 GV 72 (81)
T ss_pred Cc
Confidence 53
No 73
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.21 E-value=1.4e-10 Score=70.29 Aligned_cols=68 Identities=28% Similarity=0.510 Sum_probs=52.6
Q ss_pred EEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 83 ~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
....|+.+.|.|.+.+.|.| .+.|++++..+....... . ......|.|.++..+|+|.|+|.+.|..+
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p--~i~W~k~~~~~~~~~~~~---~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G 72 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRP--DITWLKDNKPLTPTEIGE---S---RKKKWTLSLKNLKPEDSGKYTCHVSNRAG 72 (82)
T ss_pred eccCCCeEEEEEEeeEeCCC--cEEEEECCcCCcCCccce---e---cCceEEEEEccCChhhCEEEEEEEEcCCc
Confidence 34579999999999998888 799999888664332211 0 12346899999999999999999999844
No 74
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.20 E-value=8.5e-11 Score=69.26 Aligned_cols=61 Identities=23% Similarity=0.511 Sum_probs=47.1
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+.|.|.+.|.|.| .+.|++++..+..... .. ......|.|.++..+|.|.|+|.|.|..+.
T Consensus 1 ~~L~C~~~G~P~P--~v~W~k~~~~~~~~~~---~~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 61 (71)
T cd05876 1 LVLECIAEGLPTP--EVHWDRIDGPLSPNRT---KK----LNNNKTLQLDNVLESDDGEYVCTAENSEGS 61 (71)
T ss_pred CEEEEEeeEecCC--eEEEEECCcCCCCCce---eE----EcCCCEEEEcccCHHhCEEEEEEEEcCCCe
Confidence 4689999999999 8999998876543211 11 123468999999999999999999999544
No 75
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.19 E-value=2.9e-10 Score=67.92 Aligned_cols=63 Identities=24% Similarity=0.455 Sum_probs=49.3
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+.|.|.+.+.|.| .+.|++++..+......++.... ....|.|.++..+|.|.|+|.+.|..+
T Consensus 1 ~~L~C~v~g~P~p--~v~W~k~~~~l~~~~~~~~~~~~----~~~~l~I~~~~~~D~G~Y~C~a~N~~G 63 (76)
T cd05736 1 ASLRCHAEGIPLP--RLTWLKNGMDITPKLSKQLTLIA----NGSELHISNVRYEDTGAYTCIAKNEAG 63 (76)
T ss_pred CEeEeEeeecCCC--EEEEEECCEECCCCCCccEEEeC----CCCEEEECcCCcccCEEEEEEEEcCCC
Confidence 3689999999888 89999999887655443443321 235799999999999999999999833
No 76
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.19 E-value=2.9e-10 Score=69.21 Aligned_cols=68 Identities=25% Similarity=0.337 Sum_probs=46.7
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|+.++|.|.+.+.|.+ .+.|.+.++....................+.|.|.+++.+|+|.|+|.+.|.
T Consensus 1 Ge~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~ 68 (84)
T cd05861 1 GETITVNCIVQGNEVV--DFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHES 68 (84)
T ss_pred CCcEEEEEEEECCCcc--EEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEEC
Confidence 7889999999997776 8999986653211100000011111223578999999999999999999986
No 77
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.18 E-value=1.7e-10 Score=71.63 Aligned_cols=63 Identities=22% Similarity=0.438 Sum_probs=48.2
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecc-cCCCeEEEEEeecCCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAV-TSDSGNYTCAPSSSDG 158 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~n~~~ 158 (207)
|..+.|.|.+.|.|.| .+.|++++..+..... ++.. ....|.|.++. .+|+|.|.|.|.|..+
T Consensus 19 ~~~v~l~C~a~G~P~P--~i~W~k~~~~i~~~~~-~~~~------~~g~L~I~~~~~~~D~G~Y~C~A~N~~G 82 (93)
T cd05849 19 EGKVSVNCRARANPFP--IYKWRKNNLDIDLTND-RYSM------VGGNLVINNPDKYKDAGRYVCIVSNIYG 82 (93)
T ss_pred CCeEEEeCcCccCCCC--EEEEEECCEEccCCCC-eEEE------ECCEEEECcCCcCCCCEEEEEEEEeCcc
Confidence 4479999999999888 9999999987743222 2221 23578898875 6899999999999844
No 78
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.18 E-value=8.8e-11 Score=72.97 Aligned_cols=72 Identities=21% Similarity=0.383 Sum_probs=52.0
Q ss_pred ceEEecCCcEEEEEEEee-----CCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeec
Q psy3475 81 ELYIKSGSDINLTCVVLE-----TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~-----~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n 155 (207)
...+.+|+.+.|.|.+.+ .|.+ .+.|++++..+......+..... ....|.|.++..+|+|.|+|.+.|
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~--~v~Wyk~~~~~~~~~~~~~r~~~----~~~~L~I~~~~~~DsG~Y~C~~~N 81 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGL--NLTWYKSDGKTPIPTEERSRMHQ----QKDLLWFLPAALEDSGLYTCVVRN 81 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCc--eEEEEEcCCCCcccccccceeee----cCCeEEEccCCcccCeEEEEEEcC
Confidence 345668999999999998 4666 89999988654322111111111 235799999999999999999999
Q ss_pred CCC
Q psy3475 156 SDG 158 (207)
Q Consensus 156 ~~~ 158 (207)
..+
T Consensus 82 ~~g 84 (94)
T cd05756 82 STY 84 (94)
T ss_pred CCc
Confidence 843
No 79
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.18 E-value=1.9e-10 Score=68.40 Aligned_cols=63 Identities=29% Similarity=0.556 Sum_probs=48.2
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEe-CCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
|+.+.|.|.+.+.|.| .+.|++ ++..+....+ .... ....|.|..+..+|.|.|+|.+.|..+
T Consensus 1 G~~~~l~C~~~g~P~p--~v~W~~~~~~~~~~~~~--~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N~~G 64 (74)
T cd05764 1 GQRATLRCKARGDPEP--AIHWISPDGKLISNSSR--TLVY-----DNGTLDILITTVKDTGSFTCIASNAAG 64 (74)
T ss_pred CCeEEEEEEccCcCCC--EEEEEeCCCEEecCCCe--EEEe-----cCCEEEEEECChhhCEEEEEEEECCCC
Confidence 6789999999998888 899997 5665543322 2221 235799999999999999999999844
No 80
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.17 E-value=6.5e-11 Score=69.51 Aligned_cols=58 Identities=22% Similarity=0.243 Sum_probs=46.2
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.|.|.+.|.|.| .+.|++++..+..... ++. . ....|.|.++..+|+|.|+|.+.|.
T Consensus 1 ~~l~c~v~g~P~P--~v~W~kdg~~l~~~~~-~~~--~----~~~~L~I~~v~~~D~G~YtC~a~~~ 58 (72)
T cd07702 1 YRLTPKVKAFPAP--EVIWLKDGLPAAEKCS-RYH--V----DGYSLVIKDVTEEDAGIYTILLGIK 58 (72)
T ss_pred CeEEeeEEEcCCC--eEEEEECCEECCCCCc-EEE--e----CCCEEEECcCCHHHCEEEEEEEEcc
Confidence 3689999999998 8999999988764322 121 1 2347999999999999999999997
No 81
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.17 E-value=4.6e-10 Score=65.61 Aligned_cols=61 Identities=31% Similarity=0.667 Sum_probs=46.4
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
|+.+.|.|.+.|.|.| .+.|++++..+....+ +. .....|.|.++. |+|.|+|.|.|..+.
T Consensus 1 G~~v~L~C~a~G~P~P--~v~W~k~g~~l~~~~~--~~------~~~~~L~i~~~~--d~G~Y~C~A~N~~G~ 61 (69)
T cd05739 1 GGSVNLTCVAVGAPMP--YVKWMKGGEELTKEDE--MP------VGRNVLELTNIY--ESANYTCVAISSLGM 61 (69)
T ss_pred CCeEEEEEEeeecCCC--EEEEEECCEECCCccc--ee------cCccEEEEeccc--cCeeEEEEEEeCCCE
Confidence 6789999999999999 8999999987643221 11 123468888764 799999999998543
No 82
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.16 E-value=4.1e-10 Score=67.29 Aligned_cols=68 Identities=26% Similarity=0.503 Sum_probs=47.5
Q ss_pred EEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 90 INLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 90 ~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+.|.|.+.+. |.+ .+.|++++..+......+...........+.|.|.++..+|+|.|+|.+.|..+.
T Consensus 1 ~~L~C~a~~~~p~~--~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~ 69 (76)
T cd05895 1 LVLRCETVSEYPSL--RFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGN 69 (76)
T ss_pred CEEEEecccCCCCC--ceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCc
Confidence 3689998754 444 8999999988764322111111111234578999999999999999999998543
No 83
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.16 E-value=2.8e-10 Score=69.11 Aligned_cols=63 Identities=27% Similarity=0.428 Sum_probs=48.8
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
...+.+|+.++|.|.+.+.... ..+.|++++..+.... ....|.|.+++.+|+|.|+|.+.+.
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~-~~~~w~k~g~~~~~~~------------~~~~l~I~~~~~~dsG~Y~C~~~~~ 70 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPV-YKVTYYRDGKAKKYSH------------SNSNLSIPQATLSDSGSYHCSGIIG 70 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcc-eEEEEEECCeEccccC------------CCceEEECccCHHHCEEEEEEEEeC
Confidence 3457889999999998653222 2799999987654211 2457999999999999999999997
No 84
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.16 E-value=1e-09 Score=67.89 Aligned_cols=64 Identities=25% Similarity=0.477 Sum_probs=48.4
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecc-cCCCeEEEEEeecCCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAV-TSDSGNYTCAPSSSDG 158 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~n~~~ 158 (207)
|..+.|.|.+.+.|.| .+.|++++..+......++.. ....|.|.++. .+|+|.|+|.|.|..+
T Consensus 19 ~~~~~l~C~~~g~p~p--~i~W~k~~~~l~~~~~~~~~~------~~~~L~i~~~~~~~d~G~Y~C~a~N~~G 83 (91)
T cd04967 19 EGKVSLNCRARGSPPP--TYRWLMNGTEIDDEPDSRYSL------VGGNLVISNPSKAKDAGRYQCLASNIVG 83 (91)
T ss_pred CCEEEEEEeeeEcCCC--EEEEEECCEECCCCCCCCEEE------ECCEEEEecCCccCCCEEEEEEEEcCCC
Confidence 4679999999998888 999999998874433322222 13468888776 4899999999999844
No 85
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.14 E-value=1.3e-10 Score=68.46 Aligned_cols=61 Identities=25% Similarity=0.470 Sum_probs=46.5
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+.|.|.+.+.|.| .+.|++++..+.... ... ......|.|.++..+|.|.|+|.|.|..+.
T Consensus 1 v~l~C~~~g~P~p--~v~W~k~~~~~~~~~---~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~ 61 (71)
T cd05731 1 LLLECIAEGLPTP--EISWIKIGGELPADR---TKF----ENFNKTLKIDNVSEEDDGEYRCTASNSLGS 61 (71)
T ss_pred CEEEEEeeEecCC--eEEEEECCeECCCCc---eeE----ecCCCEEEECCCCHHHCEEEEEEEEeCCce
Confidence 4689999999888 899999887653221 111 113458999999999999999999998443
No 86
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.14 E-value=5.1e-10 Score=66.63 Aligned_cols=66 Identities=26% Similarity=0.470 Sum_probs=49.6
Q ss_pred EEEEEEEee-CCCCCcEEEEEeCCEEEEecCCCce-EEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 90 INLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGI-SVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 90 ~~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+.|.|.+.+ .|.| .+.|++++..+........ ... .......|.|.++..+|.|.|+|.|.|..+.
T Consensus 1 ~~l~C~~~g~~P~p--~~~W~k~g~~l~~~~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 68 (75)
T cd05750 1 LVLKCEATSEYPSL--RFKWFKDGKELNRKNKPRNIKIR--NKKKNSELQINKAKLADSGEYTCVVENILGN 68 (75)
T ss_pred CEEEEEccCCCCCc--eEEEEcCCeeccccCCcceEEEE--ecCceEEEEEccCCcccCeEEEEEEEEcCCc
Confidence 368999999 7777 8999999988865443221 111 1224578999999999999999999998443
No 87
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.14 E-value=3.7e-10 Score=67.60 Aligned_cols=64 Identities=22% Similarity=0.427 Sum_probs=47.1
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEeccc----CCCeEEEEEeecCCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT----SDSGNYTCAPSSSDGA 159 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~Y~C~~~n~~~~ 159 (207)
+.|.|.+.|.|.| .+.|++++..+......++... .....|.|..+.. +|+|.|.|.|.|..+.
T Consensus 1 i~l~C~~~G~P~P--~v~W~k~g~~l~~~~~~~~~~~----~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05733 1 IVIKCEAKGNPPP--TFSWTRNGTHFDPEKDPRVTMK----PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGT 68 (77)
T ss_pred CEEEeeCcccCCC--eEEEEECCeECCCCCCCCEEEe----CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCc
Confidence 4689999999888 8999999988754333333222 1346788887753 6899999999998443
No 88
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.13 E-value=1.8e-09 Score=67.18 Aligned_cols=74 Identities=24% Similarity=0.391 Sum_probs=53.6
Q ss_pred cceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEec------CCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYS------QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
.+..+..|+.+.|.|.+.+.|.+ .+.|++++..+... ...++..... ......|.|.++..+|+|.|+|.+
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~--~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNS--SLQWSNTAQQTLYFGEKRALRDNRIQLVKS-TPTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCC--eEEEeccCccEEEeCCeEEEeCCeEEEEeC-CCceEEEEECCCCcccCEEEEEEE
Confidence 45678899999999999998877 89999876543111 1122222111 123578999999999999999998
Q ss_pred ecC
Q psy3475 154 SSS 156 (207)
Q Consensus 154 ~n~ 156 (207)
...
T Consensus 82 ~t~ 84 (95)
T cd05882 82 FTM 84 (95)
T ss_pred Eee
Confidence 875
No 89
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.12 E-value=1.2e-09 Score=65.41 Aligned_cols=64 Identities=25% Similarity=0.453 Sum_probs=46.1
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecc----cCCCeEEEEEeecCCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAV----TSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~g~Y~C~~~n~~~~ 159 (207)
+.|.|.+.|.|.| .+.|++++..+......++... .....|.|..+. .+|+|.|.|.|.|..+.
T Consensus 1 ~~l~C~~~G~P~P--~v~W~k~g~~~~~~~~~~~~~~----~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05875 1 IIIECEAKGNPVP--TFQWTRNGKFFNVAKDPRVSMR----RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGT 68 (77)
T ss_pred CEEEEeccccCCC--EEEEEECCEEccCcCCCcEEEe----CCCceEEEeccCCCCCCCCCEEEEEEEEeccce
Confidence 3689999999988 9999999987643333233321 134578887754 24699999999999554
No 90
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.11 E-value=2.1e-09 Score=66.94 Aligned_cols=75 Identities=24% Similarity=0.412 Sum_probs=53.2
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEE-EEec-----CCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV-VNYS-----QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
+.++.+.+|+.+.|.|.+.+.|.+ .+.|++.+.. +... ...++..... ......|.|.+++.+|+|.|+|.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~--~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNT--SLQWSNPAQQTLYFDDKKALRDNRIELVRA-SWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCce--EEEEeCCCCeEEEEcCcccccCCCEEEEEC-CCCcEEEEECcCCcccCEEEEEE
Confidence 356778899999999999998777 8999863322 2111 1223333211 12456899999999999999999
Q ss_pred eecC
Q psy3475 153 PSSS 156 (207)
Q Consensus 153 ~~n~ 156 (207)
+.+.
T Consensus 81 ~~t~ 84 (95)
T cd07701 81 LFTM 84 (95)
T ss_pred eEee
Confidence 9875
No 91
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.10 E-value=8.1e-10 Score=64.66 Aligned_cols=60 Identities=22% Similarity=0.485 Sum_probs=46.4
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+.|.|.+.+.|.| .+.|++++..+... ++... ....|.|.+++.+|+|.|+|.+.|..+.
T Consensus 1 v~l~C~~~g~P~p--~v~W~k~~~~~~~~---~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 60 (69)
T cd05725 1 VEFQCEVGGDPVP--TVLWRKEDGELPKG---RAEIL-----DDKSLKIRNVTAGDEGSYTCEAENMVGK 60 (69)
T ss_pred CEEEEECccCCCC--EEEEEECCccCCCC---cEEEe-----eCCEEEECcCChhHCEEEEEEEEcCCCc
Confidence 4789999999888 89999987655321 22222 2357999999999999999999998444
No 92
>PHA03376 BARF1; Provisional
Probab=99.10 E-value=1.4e-08 Score=69.06 Aligned_cols=107 Identities=19% Similarity=0.303 Sum_probs=64.9
Q ss_pred CeeEEccCC--------ccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEe
Q psy3475 1 VSWIRKRDL--------HILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVI 71 (207)
Q Consensus 1 v~W~r~~~~--------~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~ 71 (207)
|+|||..++ .........+++++++.+.++. ++.+|.|.+++.+|.|.|+|.+... ......-.|.+..
T Consensus 46 IrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~--gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~ 123 (221)
T PHA03376 46 VSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA--NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK 123 (221)
T ss_pred EEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC--CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeee
Confidence 689994331 1111223334667888776555 7899999999999999999999852 2334444444433
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
|-........-....-+...+.|..-+.|.| ++.|.-+
T Consensus 124 ~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P--~~~Wle~ 161 (221)
T PHA03376 124 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHP--HVQWLMP 161 (221)
T ss_pred cceEEEEeccccCCCCCeeEEEEecCCcCCc--hheeccc
Confidence 2222111100001124556899997777888 8999754
No 93
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.10 E-value=4.2e-10 Score=68.58 Aligned_cols=72 Identities=28% Similarity=0.357 Sum_probs=47.8
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCc-eEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
|+.+.|.|.+.+.+.|...+.|.+.+..+....... ...........+.|.|.+++.+|+|.|+|.+.|..+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~ 73 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTM 73 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCC
Confidence 688999999999843333899988665432110000 000000112457899999999999999999999843
No 94
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.09 E-value=1.2e-09 Score=65.28 Aligned_cols=64 Identities=23% Similarity=0.448 Sum_probs=45.7
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEeccc----CCCeEEEEEeecCCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT----SDSGNYTCAPSSSDGA 159 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~Y~C~~~n~~~~ 159 (207)
+.|.|.+.|.|.| .+.|++++..+......++... ...+.|.|..+.. .|.|.|+|.|.|..+.
T Consensus 1 ~~l~C~a~G~P~P--~i~W~k~g~~l~~~~~~~~~~~----~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05874 1 IVIQCEAKGKPPP--SFSWTRNGTHFDIDKDPKVTMK----PNTGTLVINIMNGEKAEAYEGVYQCTARNERGA 68 (77)
T ss_pred CEEEeeCcccCCC--eEEEEECCeECCCcCCCCEEEe----CCCceEEEeccccCCCCCCCEEEEEEEEcCCCe
Confidence 4689999999988 8999999987743333222221 1345777777654 3789999999998554
No 95
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.08 E-value=4.2e-10 Score=68.48 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=53.4
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|....+..|+.+.|.|.+.+ +.+ .+.|+++|..+..+.. ++.. ....|.|.+++.+|+|.|+|.+.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~--~i~W~~ng~~i~~~~~-r~~~------~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLA--RVVWKFDGKVLTPESA-KYLL------YRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCC--eEEEEECCEECCCCCc-eEEE------ECCcEEEeCCCHHHCEEEEEEEEec
Confidence 55677889999999999754 444 8999999998876532 2322 1246999999999999999999887
No 96
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.05 E-value=1.3e-09 Score=67.13 Aligned_cols=69 Identities=17% Similarity=0.333 Sum_probs=51.2
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecC--CCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQ--RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+..+.+..|+.+.|.|.+.+ |.+ .+.|++++..+.... ..++.. ....|.|.+++.+|+|.|.|.+.+.
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~--~i~W~k~~~~~~~~~~~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~a~~~ 73 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLA--SVVWLFQGGPLQRKEEPEERLLV------TEDGLLIRSVSPADAGVYTCQSVEH 73 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCc--eEEEEECCcccccccCcCceEEE------cCCCEEEccCCHHHCEEEEEEEecC
Confidence 34556788999999999876 555 899999887665432 112221 1235899999999999999999886
No 97
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.05 E-value=1.6e-09 Score=66.17 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=52.9
Q ss_pred cCcceEEecCCcEEEEEEEee-CCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 78 GNSELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.|....+..|+.++|.|.+.+ .|.+ .+.|++++..+.... ......|.|..++.+|+|.|.|.+.|.
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~--~i~W~~~~~~~~~~~----------~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAY--TLVWTRVGGGLPSRA----------MDFNGILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCc--EEEEEECCCcCCCcc----------cccCCEEEECCCCHHHCEEEEEEEecc
Confidence 455667889999999999976 4444 899999776542211 112458999999999999999999998
Q ss_pred CCC
Q psy3475 157 DGA 159 (207)
Q Consensus 157 ~~~ 159 (207)
.+.
T Consensus 75 ~g~ 77 (85)
T cd05754 75 LDT 77 (85)
T ss_pred CCe
Confidence 443
No 98
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.05 E-value=1.1e-09 Score=66.13 Aligned_cols=66 Identities=32% Similarity=0.561 Sum_probs=47.0
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCE---EEEecC-C--CceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGAN---VVNYSQ-R--GGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~---~~~~~~-~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
|+.+.|.|.+.+.|.| .+.|++++. .+.... . .++.. .....|.|.++..+|+|.|+|.+.|..+.
T Consensus 1 G~~v~l~C~~~g~P~p--~v~W~k~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 72 (81)
T cd05765 1 GETASFHCDVTGRPPP--EITWEKQVHGKENLIMRPNHVRGNVVV-----TNIGQLVIYNAQPQDAGLYTCTARNSGGL 72 (81)
T ss_pred CCcEEEEeeccccCCC--cEEEEecCCCCcceeecCCcccCCEEE-----ccccEEEEccCCcccCEEEEEEEecCCce
Confidence 6789999999999888 899998632 111111 1 11111 12358999999999999999999998443
No 99
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.05 E-value=1.3e-09 Score=65.64 Aligned_cols=62 Identities=27% Similarity=0.501 Sum_probs=44.5
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEE-Ee-----cCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVV-NY-----SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+.|.|.+.+.|.| .+.|++++... .. ....++... ....|.|.++..+|+|.|.|.|.|..+
T Consensus 1 v~l~C~~~G~P~P--~v~W~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G 68 (79)
T cd05734 1 VTLNCSAEGYPPP--TIVWKHSKGRGHPQHTHTCCLAGRIQLL-----SNGSLLIKHVLEEDSGYYLCKVSNDVG 68 (79)
T ss_pred CEeEeeCeEeCCC--EEEEEECCCccccccccccccCCCEEEe-----cCCeEEECcCCcccCEEEEEEEEeCCC
Confidence 4799999999988 89999854321 11 012222222 236799999999999999999999843
No 100
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.00 E-value=7.2e-09 Score=63.10 Aligned_cols=71 Identities=28% Similarity=0.546 Sum_probs=52.3
Q ss_pred EEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 83 ~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
.+..|+.+.|.|.+.+.|.+ .+.|++++..+..... .... ........|.|.++..+|.|.|.|.+.|..+
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~--~v~W~k~~~~~~~~~~--~~~~-~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g 75 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRP--TITWLKDGKPFKKEHR--IGGY-KVRKKKWTLILESVVPSDSGKYTCIVENKYG 75 (85)
T ss_pred EecCCCcEEEEEEcCCCCCC--eEEEEECCEECcccCc--eeEE-EccCcEEEEEEeECCcccCEEEEEEEEECCc
Confidence 34579999999999988766 8999999887654322 1110 1112345799999999999999999999843
No 101
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.99 E-value=3.2e-09 Score=65.72 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=49.2
Q ss_pred EEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEec------------CCCceEEEEec-ccceEEEEEEecccCCCeEE
Q psy3475 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYS------------QRGGISVVTEK-QTRTSRLVISKAVTSDSGNY 149 (207)
Q Consensus 83 ~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y 149 (207)
.+..|+.++|.|.+.+.+.+ .+.|+++++..... ...++...... ......|.|.+++.+|+|+|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~--~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSI--QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCc--EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 45689999999999987666 89999765322110 01111111111 22346799999999999999
Q ss_pred EEEeecC
Q psy3475 150 TCAPSSS 156 (207)
Q Consensus 150 ~C~~~n~ 156 (207)
.|.+.|.
T Consensus 81 ~C~v~~~ 87 (94)
T cd07690 81 ICEVEDK 87 (94)
T ss_pred EEEECCc
Confidence 9999986
No 102
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.99 E-value=8.3e-09 Score=63.05 Aligned_cols=69 Identities=25% Similarity=0.333 Sum_probs=47.7
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEe---cCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNY---SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|+.+.|.|.+.+.+.+...+.|...+..... ....+... .......+.|.|.+++.+|+|.|+|.+.|.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~-~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~ 72 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSL-QEHTELSSTLTIENVTLSDLGRYTCTASSG 72 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccc-cccceeeeEEEEecCCcccCEEEEEEEeec
Confidence 7889999999987777668899876653211 11000000 000224578999999999999999999997
No 103
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.96 E-value=3.6e-09 Score=62.83 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=40.9
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
|.|||.+... ...+.|+.+..+. .+..+|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 15 i~W~k~~~~i--------~~~~~r~~~~~~~-~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 15 IFWKRNNEMV--------QYNTDRISLYQDN-SGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred EEEEECCEEC--------cCCCCeEEEEEcC-CCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 5799964211 0123567665433 24468999999999999999999984 45666666654
No 104
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.96 E-value=2.7e-09 Score=64.68 Aligned_cols=38 Identities=37% Similarity=0.405 Sum_probs=33.6
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEecc
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISK 73 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~ 73 (207)
..|.|.+++.+|+|.|+|.+.+. .....++.|.|.+||
T Consensus 47 ~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP 85 (85)
T cd05853 47 GDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP 85 (85)
T ss_pred CcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence 37999999999999999999984 567889999998876
No 105
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.96 E-value=3.3e-08 Score=61.65 Aligned_cols=76 Identities=20% Similarity=0.392 Sum_probs=52.0
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEE-EEec-----CCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV-VNYS-----QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
+..+.+..|+.+.|.|.+.+.+.+ .+.|++.+.. +... ...++.... .......|.|.+++.+|+|.|+|.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~--~v~W~~p~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNS--SLQWSNPNQQTLYFNDKRALRDNRIQLVN-FSANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCc--eEEEeCCCCcEEEeccccccccCcEEEEc-CCCCeeEEEEccCCcccCEEEEEE
Confidence 345677899999999999887666 8999863222 1111 112333321 122446799999999999999999
Q ss_pred eecCC
Q psy3475 153 PSSSD 157 (207)
Q Consensus 153 ~~n~~ 157 (207)
+.+..
T Consensus 81 ~~~~~ 85 (95)
T cd05717 81 LYTMP 85 (95)
T ss_pred EecCC
Confidence 88763
No 106
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.91 E-value=6.7e-09 Score=64.21 Aligned_cols=70 Identities=27% Similarity=0.355 Sum_probs=51.4
Q ss_pred cceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEe-cCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 80 SELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVVNY-SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
....+.+|+.+.|.|..... |.+ .+.|++++..... ....++. ......|.|.+++.+|+|+|+|.|+|.
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p--~~~W~k~~~~~~~~~d~r~~~-----~~~~G~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDL--SYRWLLNEFPNFIPEDGRRFV-----SQTNGNLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCC--EEEEEECCcccccccCCCeEE-----eCCCCcEEEeecCHhhCceeEEEEEec
Confidence 34567889999999977655 555 8999998765321 1121221 123568999999999999999999998
No 107
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.90 E-value=1e-08 Score=62.49 Aligned_cols=38 Identities=32% Similarity=0.338 Sum_probs=32.9
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEecc
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISK 73 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~ 73 (207)
.+|.|.+++.+|+|.|+|.|.|. +.....+.|.|..||
T Consensus 47 ~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P 85 (85)
T cd05854 47 GDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP 85 (85)
T ss_pred eEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence 48999999999999999999984 567888899888754
No 108
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.90 E-value=2.6e-08 Score=62.67 Aligned_cols=69 Identities=22% Similarity=0.289 Sum_probs=44.7
Q ss_pred CeeEEccCCccceeeEEE-EeC--------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec--CCceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILT-YTN--------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST--EPKISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~-~~~--------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~--~~~~~~~~~l~v 69 (207)
|.|+|+..+......... +.. .+|..+..+...++.+|+|.+++.+|+|.|.|.+.+ .+.....+.|.|
T Consensus 20 v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 20 VLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 689998655333222222 211 256565554455678999999999999999999986 333455555554
No 109
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.89 E-value=1.4e-08 Score=57.78 Aligned_cols=61 Identities=30% Similarity=0.541 Sum_probs=47.0
Q ss_pred cCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.|+.+.|.|.+.+.+.+ .+.|++++..+. . . ... ......|.|.++...|.|.|+|.+.|.
T Consensus 1 ~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~-~-~--~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 1 EGQSVTLTCPAEGDPVP--NITWLKDGKPLP-E-S--NRL----SASGSTLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred CCceEEEEeeCccCCCC--eEEEEECCEECC-C-C--CEE----ecCCcEEEEeeCCcccCEEEEEEEecC
Confidence 47889999998777666 899999887765 1 1 111 123468999999999999999999886
No 110
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.89 E-value=1.1e-08 Score=63.21 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=53.7
Q ss_pred CcceEEecCCcEEEEEE-EeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCe-EEEEEeecC
Q psy3475 79 NSELYIKSGSDINLTCV-VLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSG-NYTCAPSSS 156 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~-~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~n~ 156 (207)
...+.+.+|+.+.|.|. ..+.|.| .+.|+.++...... ..++... ....|.|.+++.+|+| .|.|.|.|.
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P--~i~W~~~~~~~i~~-~~Ri~~~-----~~GnL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPL--RIYWMNSDLLHITQ-DERVSMG-----QNGNLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCC--EEEEECCCCccccc-cccEEEC-----CCceEEEEEEehhhCCCCeEEEEEcc
Confidence 35677889999999997 5888888 89999765442222 2233322 3479999999999999 899999998
Q ss_pred C
Q psy3475 157 D 157 (207)
Q Consensus 157 ~ 157 (207)
.
T Consensus 82 ~ 82 (95)
T cd05845 82 G 82 (95)
T ss_pred c
Confidence 3
No 111
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.89 E-value=5e-09 Score=64.73 Aligned_cols=67 Identities=22% Similarity=0.451 Sum_probs=50.5
Q ss_pred eEEecCCcEEEEEEEeeCCC---CCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 82 LYIKSGSDINLTCVVLETPD---PPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 82 ~~~~~g~~~~l~C~~~~~~~---~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.+..|..+.|.|...+.+. +...+.|++++..+..... . .. ....|.|.++..+|+|.|+|.+.|.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~-~--~~-----~~~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRK-R--FV-----KGSKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCcc-E--Ee-----cCCEEEEeeCChhhCEEEEEEEEec
Confidence 44567999999998765431 2338999999998764432 1 11 3468999999999999999999987
No 112
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.87 E-value=7.4e-09 Score=59.55 Aligned_cols=63 Identities=33% Similarity=0.560 Sum_probs=40.6
Q ss_pred CCcEEEEEEE-eeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 87 GSDINLTCVV-LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 87 g~~~~l~C~~-~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
|+.+.|.|.+ .+.+.+ .+.|.+++......... ............|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~--~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPT--TVTWSKNGQSLPEGSTT--NRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTS--EEEEEETTTTTSEEEEE--EEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCc--EEEEEECCccccCccee--EeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 343333 89999977644322110 000000111124999999999999999986
No 113
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.87 E-value=8.2e-08 Score=61.87 Aligned_cols=79 Identities=20% Similarity=0.344 Sum_probs=52.1
Q ss_pred cCcceEEecCCcEEEEEEEeeCC--CCCcEEEEEeC---------------CEEEEe---cCCCceEEEEecccceEEEE
Q psy3475 78 GNSELYIKSGSDINLTCVVLETP--DPPSFIYWYRG---------------ANVVNY---SQRGGISVVTEKQTRTSRLV 137 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~--~~~~~~~W~~~---------------~~~~~~---~~~~~~~~~~~~~~~~~~l~ 137 (207)
.+..+.+..|+.+.|.|.+.... .+...+.|.+. |..... .-+.|+...-+......+|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 35566788999999999997753 23348999441 222110 01122222222234567899
Q ss_pred EEecccCCCeEEEEEeecC
Q psy3475 138 ISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 138 i~~~~~~d~g~Y~C~~~n~ 156 (207)
|.+++.+|.|.|+|.+.|.
T Consensus 84 I~nv~~sD~G~Y~C~v~n~ 102 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNP 102 (116)
T ss_pred EccCCcccCEEEEEEEEcC
Confidence 9999999999999999997
No 114
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.86 E-value=1.3e-08 Score=63.94 Aligned_cols=65 Identities=26% Similarity=0.467 Sum_probs=42.2
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
|+|||+.++...... ....++|+.+.... +..+|.|.+++.+|+|.|+|.+.|. +....++.|.|
T Consensus 33 i~W~k~~~g~~~~~~--~~~~~~r~~v~~~~--~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 33 ITWKRASDGHTFSEG--DKSPDGRIEVKGQH--GESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEECCCCceeccC--CcCcCceEEEeecC--CeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 689997654321110 01124577764322 3458999999999999999999984 45566666653
No 115
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.86 E-value=2.2e-08 Score=64.12 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=43.8
Q ss_pred CeeEEccCCccceeeEEEEe-----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
+.|||+.+...+........ .++||.+..+...+.++|+|.+++.+|+|.|+|.+.+.
T Consensus 30 v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 92 (109)
T cd04983 30 LFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES 92 (109)
T ss_pred EEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 57999876554444333322 35888877666668899999999999999999999753
No 116
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.86 E-value=3.2e-08 Score=59.37 Aligned_cols=59 Identities=37% Similarity=0.726 Sum_probs=48.3
Q ss_pred eEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 82 ~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
..+..|+.+.|.|.+.+.|.+ .+.|++++..+..... .+.+..+..+|.|.|+|.+.+.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~~~~~~--------------~~~~~~~~~~~~g~y~C~~~~~ 67 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPP--QVQWYKNGSPINSSQN--------------GLFIPNVSPEDSGNYTCRASNG 67 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSS--EEEEEETTEEEEEESS--------------EEEESSEEGGGTEEEEEEEEET
T ss_pred eEEeCCCcEEEEEEEEcccce--eeeeeeeeeeeeeeee--------------eeeeeeeccccCEEEEEEEEeC
Confidence 557889999999999976665 8999999887764322 2666788899999999999986
No 117
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.85 E-value=2e-08 Score=59.73 Aligned_cols=59 Identities=20% Similarity=0.455 Sum_probs=39.2
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
|+|||++....+. ..+.++.+...++ .|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 15 v~W~k~~~~~~~~------~~~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 15 IAWQKDGGTDFPA------ARERRMHVMPEDD----VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred EEEEeCCCccCCc------ccccceEEecCCC----EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 5899975321111 1234555433222 7999999999999999999984 45666677765
No 118
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.85 E-value=1e-08 Score=60.56 Aligned_cols=55 Identities=25% Similarity=0.422 Sum_probs=38.6
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
|.|+|.+.. ...+.|+.+..++ +|.|.+++.+|+|.|+|.+.|. +....+..|.|
T Consensus 18 v~W~k~~~~---------l~~~~r~~~~~~g-----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 18 FSWSKGTEL---------LVNNSRISIWDDG-----SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred EEEEeCCEe---------cccCCCEEEcCCC-----EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 579885321 1235677765433 7999999999999999999984 44566666653
No 119
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.83 E-value=1.6e-08 Score=60.03 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=40.2
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
|+|||.+.... ....|+.+..+. .+..+|.|.+++.+|+|.|+|.+.|. +....++.|.|
T Consensus 15 v~W~k~~~~l~--------~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 15 IFWKKENESLT--------HNTDRVSMHQDN-CGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred EEEEECCEECC--------CCCCeEEEEEcC-CCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999642111 123566654332 23447999999999999999999984 45666666654
No 120
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.82 E-value=3.9e-08 Score=60.71 Aligned_cols=66 Identities=18% Similarity=0.355 Sum_probs=45.2
Q ss_pred eEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEEEec--CCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVVNYS--QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 82 ~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+...+|+.+.|.|.. +.|.| .+.|++. +...... ...++.. ....|.|.+++.+|+|.|+|.+.+.
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p--~v~Wykq~~g~~~~~~~~~~~r~~~------~~~~L~I~~~~~~DsG~Y~C~a~~~ 75 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQA--SVKWLFQRGGDQRKEEVKTEERLIH------TERGLLLRSLQRSDAGVYTCTAVEH 75 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCc--eEEEEEECCCCCccccccccccEEE------ecCeEEEeeCChhHCEEEEEEEEcc
Confidence 456789999999996 45656 8999973 2221111 1112221 2346999999999999999999864
No 121
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.81 E-value=3.9e-08 Score=63.69 Aligned_cols=59 Identities=25% Similarity=0.411 Sum_probs=39.7
Q ss_pred CeeEEccCCccceeeEEEEeC-----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC
Q psy3475 1 VSWIRKRDLHILTVGILTYTN-----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~-----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 59 (207)
|.||++..+.......+.+.. .+|+.+..+...++++|+|.+++.+|+|.|.|.+.+.+
T Consensus 34 v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~ 103 (116)
T cd05715 34 VTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNPP 103 (116)
T ss_pred EEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCcccCEEEEEEEEeCC
Confidence 579998764333333333321 14455444555567899999999999999999998743
No 122
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.80 E-value=2.5e-08 Score=61.56 Aligned_cols=66 Identities=21% Similarity=0.291 Sum_probs=43.9
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec-CCceeeeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST-EPKISIGYKLNVVIS 72 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v~~~ 72 (207)
|.|||.+.... ...........|+.+..++ .|.|.+++.+|+|.|+|.+.| .+.....+.|.|...
T Consensus 18 v~W~k~g~~~~-~~~~~~~~~~~r~~v~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 84 (90)
T cd05726 18 IFWQKEGSQNL-LFSYQPPQSSSRFSVSQTG-----DLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDV 84 (90)
T ss_pred EEEEeCCCcce-eecccCCCCCCeEEECCCC-----eEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeec
Confidence 57998643211 1000001235677764332 799999999999999999998 456677788888764
No 123
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.80 E-value=3.5e-08 Score=61.89 Aligned_cols=55 Identities=25% Similarity=0.372 Sum_probs=42.0
Q ss_pred CeeEEccCCccceeeEEEEeC-----CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTN-----DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..+....+.+.. ..||.+..+. +..+|+|.+++.+|+|.|.|.+.+
T Consensus 25 i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~--~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 25 VNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG--NTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred EEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC--CEEEEEECCCChhhCEEEEEEEcc
Confidence 589999988776655554422 3578865433 678899999999999999998864
No 124
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.80 E-value=8.5e-08 Score=61.03 Aligned_cols=69 Identities=20% Similarity=0.240 Sum_probs=44.8
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV 70 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 70 (207)
|.|||+..+..+....++.. ..+|+.+.. ...+..+|.|.+++.+|+|.|+|.+.+. +.....+.|.|.
T Consensus 25 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 25 VKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR-AHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC-CCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence 68999865433222222211 136777543 2345779999999999999999999763 335666666664
No 125
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.79 E-value=1.7e-07 Score=58.00 Aligned_cols=79 Identities=18% Similarity=0.282 Sum_probs=54.8
Q ss_pred cceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEe------cCCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNY------SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
.++.+.+|+.+.|.|.+.+.... .+.|++.+..+.. ....|+..... .....+|.|..++.+|+|.|.|.+
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~--~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~-~~~~~tL~I~~vq~~D~G~Y~Cqv 81 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDS--VIQLLNPNRQTIYFRDVRPLKDSRFQLVNF-SSNELRVSLSNVSLSDEGRYFCQL 81 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCcc--EEEEEecCCcEEEecCccccCCcCEEEEeC-CCCEEEEEECcCCcccCEEEEEEE
Confidence 45678899999999999997644 7889875543321 12233443321 234567999999999999999998
Q ss_pred ecCCCCeE
Q psy3475 154 SSSDGASV 161 (207)
Q Consensus 154 ~n~~~~~~ 161 (207)
........
T Consensus 82 ~t~p~~~~ 89 (95)
T cd05881 82 YTDPPQEA 89 (95)
T ss_pred EcccCeEE
Confidence 87633333
No 126
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.79 E-value=3.8e-08 Score=58.49 Aligned_cols=60 Identities=20% Similarity=0.349 Sum_probs=39.7
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
|.|||.+.... ....|+.+..+. .+..+|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 15 v~W~k~~~~i~--------~~~~r~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 15 IFWKKNNEMLT--------YNTDRISLYQDN-CGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred EEEEECCEECC--------CCCCcEEEEEcC-CCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 57999642111 123466654332 24457999999999999999999984 45666666653
No 127
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.79 E-value=4.7e-08 Score=60.53 Aligned_cols=66 Identities=21% Similarity=0.326 Sum_probs=43.7
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~ 68 (207)
+.||+.+...... .......+.||++... ..+.++|.|.+++.+|+|.|+|.+...+.......+.
T Consensus 29 v~w~~~~~~~i~~-~~~~~~~d~Rf~~~~~-~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~~~ 94 (95)
T cd05881 29 IQLLNPNRQTIYF-RDVRPLKDSRFQLVNF-SSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTTIT 94 (95)
T ss_pred EEEEecCCcEEEe-cCccccCCcCEEEEeC-CCCEEEEEECcCCcccCEEEEEEEEcccCeEEEEEEE
Confidence 4688655222111 1112245889997753 3578899999999999999999998655555444443
No 128
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.78 E-value=5.7e-08 Score=62.74 Aligned_cols=38 Identities=29% Similarity=0.291 Sum_probs=29.2
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 60 (207)
+|+.+..+...++++|.|.+++.+|+|.|+|.+.+.+.
T Consensus 66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 66 GRVVWDGNIMRRDASILIWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred CeEEEecCCcCCceEEEEeeCChhhCEEEEEEEEeCCC
Confidence 34444444456788999999999999999999987433
No 129
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.77 E-value=3e-08 Score=61.72 Aligned_cols=48 Identities=27% Similarity=0.409 Sum_probs=34.9
Q ss_pred CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEE
Q psy3475 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNV 69 (207)
Q Consensus 21 ~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 69 (207)
.++|+.+... ..+.++|.|.+++.+|+|.|+|.+.+.........|.|
T Consensus 48 ~~~r~~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l~v 95 (95)
T cd07701 48 RDNRIELVRA-SWHELSISISDVSLSDEGQYTCSLFTMPVKTSKAYLTV 95 (95)
T ss_pred cCCCEEEEEC-CCCcEEEEECcCCcccCEEEEEEeEeecCccEEEEEEC
Confidence 3678876433 33567999999999999999999987444455555543
No 130
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.77 E-value=2.1e-08 Score=60.43 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=40.2
Q ss_pred CeeEEccCCccceeeEEEE---------eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTY---------TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~---------~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 55 (207)
|.|||+..+.......... ...+|+.+..+...+.++|.|.+++.+|+|.|.|.+
T Consensus 18 v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 18 VSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 5799987654444333221 125788877765568899999999999999999963
No 131
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.77 E-value=6.4e-08 Score=60.63 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=38.3
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEecc
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISK 73 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~ 73 (207)
+.++.+.... ..+.|.|.+++.+|+|.|+|.+.|. +.....+.|.|...|
T Consensus 44 ~~~~~~~~~~--~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P 94 (98)
T cd05762 44 GEGIKIENTE--NSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP 94 (98)
T ss_pred CCcEEEEecC--CeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence 3455544322 2458999999999999999999984 567888899998765
No 132
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.77 E-value=3.5e-08 Score=60.21 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=33.0
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEecc
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISK 73 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~ 73 (207)
..+|.|.+++.+|+|.|+|.+.|. +....++.|.|..||
T Consensus 46 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP 85 (85)
T cd04970 46 NGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85 (85)
T ss_pred cceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence 348999999999999999999984 457788888888765
No 133
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.77 E-value=5.6e-08 Score=62.96 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=44.2
Q ss_pred CeeEEccCCccceeeEEEEeC----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..+......+.. .+||.+..+.....+.|.|.+++.+|+|.|.|....
T Consensus 31 ~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 31 VNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred EEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 579999998777665554421 367887766655677899999999999999998763
No 134
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.76 E-value=4.5e-08 Score=57.19 Aligned_cols=54 Identities=28% Similarity=0.390 Sum_probs=36.7
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
|.|+|++... ...++.+... .+|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 15 v~W~k~~~~~----------~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 15 VLWRKEDGEL----------PKGRAEILDD-----KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred EEEEECCccC----------CCCcEEEeeC-----CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 5799874321 1345554422 27999999999999999999984 44555555543
No 135
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.76 E-value=3.1e-08 Score=63.52 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=41.4
Q ss_pred CeeEEccCCccceeeEEEEeC---------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTN---------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
|.||||.++..+....+.... ++||.+..+.. ..+.|.|.+++.+|+|.|.|.+..
T Consensus 29 v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~L~I~~~~~~Dsg~Y~Ca~~~ 93 (110)
T cd05899 29 MYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSL-TRSSLTIKSAEPEDSAVYLCASSL 93 (110)
T ss_pred EEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCC-CccEEEECCCChhhCEEEEEEeeC
Confidence 589999887666655443211 36777654432 678999999999999999999875
No 136
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.76 E-value=2.9e-07 Score=57.16 Aligned_cols=84 Identities=19% Similarity=0.336 Sum_probs=59.8
Q ss_pred cceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC-C
Q psy3475 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS-D 157 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~-~ 157 (207)
..+.+..|+.+.|.|.+.+.|.|. .+.|.+++..+.......+...... ....+.|.+..+..++.|.|+|.|.|+ .
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~-~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPE-HQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCe-eeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 456788999999999999998883 4899998776544333112111111 225588999999999999999999998 4
Q ss_pred CCeEEEE
Q psy3475 158 GASVVVH 164 (207)
Q Consensus 158 ~~~~~~~ 164 (207)
..++.+.
T Consensus 90 ~~s~tF~ 96 (101)
T cd05860 90 SASVTFN 96 (101)
T ss_pred eEEEEEE
Confidence 4444433
No 137
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.75 E-value=7.9e-08 Score=59.75 Aligned_cols=65 Identities=25% Similarity=0.385 Sum_probs=40.8
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKL 67 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l 67 (207)
|.|+|.+.. .+..+......+.|+.+.... .+..+|.|.+++.+|+|.|+|.+...........|
T Consensus 29 v~W~k~~~~-~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~~ 93 (95)
T cd05882 29 LQWSNTAQQ-TLYFGEKRALRDNRIQLVKST-PTELIISISNVQLSDEGEYTCSIFTMPVRTAKATV 93 (95)
T ss_pred EEEeccCcc-EEEeCCeEEEeCCeEEEEeCC-CceEEEEECCCCcccCEEEEEEEEeeccccEEEEE
Confidence 578886432 222222223346777754433 35679999999999999999999863333333343
No 138
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.74 E-value=2.7e-08 Score=61.56 Aligned_cols=69 Identities=17% Similarity=0.312 Sum_probs=48.3
Q ss_pred EEecCCcEEEEEEE-eeC--CCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 83 YIKSGSDINLTCVV-LET--PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 83 ~~~~g~~~~l~C~~-~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.+..|....|.|.- .+. +.+...+.|++++..+..... ++... .....|.|.++..+|+|.|+|.+.+.
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~-~~~~~----~~~~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNE-KFYSL----KGSTYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCc-ceEec----CCCCEEEEEEcChhhCEEEEEEEEEe
Confidence 35578889999973 222 223338999999988764432 11111 12357999999999999999999997
No 139
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.74 E-value=1.4e-07 Score=60.42 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=44.7
Q ss_pred CeeEEccCCccceeeEEEEeC---------CCeEEEeec-CCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTN---------DLRFTSLHS-DGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~---------~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
|.|||+..+.... .+.+.. .+|+.+..+ ...+..+|+|.+++.+|+|.|.|.+... ......+.|.|
T Consensus 29 i~W~k~~~~~~~~--v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V 106 (110)
T cd05878 29 IKWTKLSGQKEVT--VLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEV 106 (110)
T ss_pred EEEEEecCCCcEE--EEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEE
Confidence 5899985433221 111111 357666432 3456789999999999999999999763 33556666666
Q ss_pred Ee
Q psy3475 70 VI 71 (207)
Q Consensus 70 ~~ 71 (207)
..
T Consensus 107 ~g 108 (110)
T cd05878 107 TG 108 (110)
T ss_pred EE
Confidence 43
No 140
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.73 E-value=5.1e-07 Score=54.39 Aligned_cols=70 Identities=34% Similarity=0.636 Sum_probs=51.8
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeC-CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRG-ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
...+..|+.+.|.|.+.+.+.+ .+.|+++ +..+.... ++.... ......|.|.++..+|.|.|.|.+.+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~~~~v~~~~--~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPP--EVTWYKQGGKLLAESG--RFSVSR--SGSNSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCC--eEEEEECCCEEcCCCC--cEEEEE--cCCeeEEEEEeeccccCeEEEEEEEcC
Confidence 4556789999999999987444 8999997 66654222 222222 112568999999999999999999976
No 141
>smart00409 IG Immunoglobulin.
Probab=98.73 E-value=5.1e-07 Score=54.39 Aligned_cols=70 Identities=34% Similarity=0.636 Sum_probs=51.8
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeC-CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRG-ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
...+..|+.+.|.|.+.+.+.+ .+.|+++ +..+.... ++.... ......|.|.++..+|.|.|.|.+.+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~~~~v~~~~--~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPP--EVTWYKQGGKLLAESG--RFSVSR--SGSNSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCC--eEEEEECCCEEcCCCC--cEEEEE--cCCeeEEEEEeeccccCeEEEEEEEcC
Confidence 4556789999999999987444 8999997 66654222 222222 112568999999999999999999976
No 142
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.73 E-value=8.9e-08 Score=58.76 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=33.2
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEecc
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISK 73 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~ 73 (207)
...|.|.++..+|+|.|+|.|.|. +.....+.|.|..+|
T Consensus 46 ~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P 85 (88)
T cd05735 46 ISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPP 85 (88)
T ss_pred EEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCC
Confidence 357999999999999999999984 557788888888765
No 143
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.73 E-value=4.6e-08 Score=63.34 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=43.3
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
|.|||+.++..+........ .++||.+..+.....++|.|.+++.+|+|.|.|.+..
T Consensus 32 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 32 IHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 58999988766655444332 2478887766555688999999999999999999864
No 144
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.73 E-value=2e-07 Score=59.55 Aligned_cols=77 Identities=30% Similarity=0.518 Sum_probs=53.3
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCE---E---EEe------cCCCceEEEEecccceEEEEEEecccCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN---V---VNY------SQRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~---~---~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.+..+.+..|+.++|.|.+...+.. .+.|++... . +.. ....++............|.|.+++.+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFY--YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCcc--EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 3556778899999999999876444 889997321 1 111 1123343332223356789999999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
+|.|.|.+.+.
T Consensus 82 sG~Y~C~~~~~ 92 (109)
T cd04983 82 SAVYFCALSES 92 (109)
T ss_pred CEEEEEEEecC
Confidence 99999999875
No 145
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.71 E-value=7.9e-08 Score=57.74 Aligned_cols=62 Identities=24% Similarity=0.229 Sum_probs=38.4
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~ 68 (207)
|.|||+.....+... .....++|+.+..+ ++|.|.+++.+|+|.|.|.+.|... .++.+.|.
T Consensus 15 v~W~~~~~~~~~~~~-~~~~~~~r~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 15 IVWKHSKGRGHPQHT-HTCCLAGRIQLLSN-----GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred EEEEECCCccccccc-cccccCCCEEEecC-----CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 579997543221110 00113466665433 3799999999999999999998422 34555554
No 146
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.71 E-value=6.1e-08 Score=60.78 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=43.0
Q ss_pred CeeEEccCCccceeeEE----EEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC
Q psy3475 1 VSWIRKRDLHILTVGIL----TYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 59 (207)
+.|||+.++..+..... .....+|+.+..+...+.++|+|.+++.+|+|.|.|.+...+
T Consensus 25 ~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 25 KYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred eEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 57999987654443220 011257888766666678999999999999999999987643
No 147
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.70 E-value=7.1e-08 Score=58.16 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=27.4
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
+.|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 47 GQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred cEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 48999999999999999999984 44566666553
No 148
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.70 E-value=7.8e-08 Score=56.50 Aligned_cols=55 Identities=18% Similarity=0.427 Sum_probs=37.4
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
|+|+|.+... ..+.++.+..++ .|.|.+++.+|+|.|+|.+.|. +....++.|.|
T Consensus 16 v~W~k~g~~~---------~~~~~~~~~~~~-----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 16 VKWVKNGDMV---------IPSDYFKIVKEH-----NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred EEEEECCeEC---------CCCCCEEEEecC-----CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 5799864311 123455554433 5888899999999999999984 45666666653
No 149
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.70 E-value=1.1e-07 Score=60.60 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=39.6
Q ss_pred CeeEEccCCc---cceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLH---ILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~---~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++. .+....+... .++||++....+.+.+.|+|.+++.+|+|.|.|...+
T Consensus 24 ~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 24 IYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred EEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEcC
Confidence 5799998873 2332222111 1357776555555678999999999999999999864
No 150
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.69 E-value=1.4e-07 Score=55.84 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=38.6
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
|.|+|++... ..+.++.+.... ....|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 16 v~W~k~g~~l---------~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 16 VTWSKDGKPL---------KLSGRVQIETTA--SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEEECCEEc---------CCCCeEEEEECC--CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 5798864311 123455544322 3568999999999999999999984 44566665543
No 151
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.69 E-value=7.4e-08 Score=60.25 Aligned_cols=36 Identities=22% Similarity=0.655 Sum_probs=27.9
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEE
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNV 69 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v 69 (207)
++++|+|.+++.+|+|.|.|.+..... ....+.|.|
T Consensus 59 ~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 59 NDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred CceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 467999999999999999999986433 345555554
No 152
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.69 E-value=1.4e-07 Score=58.84 Aligned_cols=46 Identities=26% Similarity=0.453 Sum_probs=33.1
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC--CceeeeEEEEE
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNV 69 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v 69 (207)
.|+.+..+.+ ..++|.|.+++.+|+|.|+|.|.|. +....++.|.|
T Consensus 48 ~r~~v~~~~~-~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 48 QRISVVRNDD-YSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred CeEEEEeCCC-CceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 3555433222 3458999999999999999999984 44666666665
No 153
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.69 E-value=2.4e-07 Score=59.01 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=45.8
Q ss_pred CeeEEccCCccceeeEEEE-eC---------CCeEEEeecC-CCCcEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTY-TN---------DLRFTSLHSD-GSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-~~---------~~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~ 68 (207)
|.|+|+.++..+....+.+ .. .+|..+..+. ..++.+|.|.+++.+|+|.|.|.+.... .....+.|.
T Consensus 26 I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~ 105 (110)
T cd05902 26 IKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLE 105 (110)
T ss_pred EEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEE
Confidence 5899986543333333222 21 3677766533 3468899999999999999999998632 245556666
Q ss_pred EE
Q psy3475 69 VV 70 (207)
Q Consensus 69 v~ 70 (207)
|.
T Consensus 106 V~ 107 (110)
T cd05902 106 VT 107 (110)
T ss_pred EE
Confidence 54
No 154
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.69 E-value=2.1e-07 Score=59.53 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=43.4
Q ss_pred CeeEEccCCccceeeEEEE-------eCCCeEEEeec-CCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTY-------TNDLRFTSLHS-DGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV 70 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-------~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 70 (207)
|.|+|+..+.......... ...+|+++... ...++++|+|.+++.+|+|.|+|.+.+. ......+.|.|.
T Consensus 31 I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 31 IKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred EEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 5899986543222111110 11357776542 2446789999999999999999999853 233444555553
No 155
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.68 E-value=7.1e-08 Score=57.02 Aligned_cols=55 Identities=27% Similarity=0.414 Sum_probs=37.5
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
|.|||.+.. ...+.++.+..+. +|.|.+++.+|+|.|+|.+.|. +....++.|.|
T Consensus 18 v~W~k~~~~---------~~~~~~~~~~~~~-----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 18 ISWSKGTEL---------LTNSSRICIWPDG-----SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred EEEEECCEE---------cccCCCEEECCCC-----eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 478886421 1234566654332 7999999999999999999984 44566666553
No 156
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.67 E-value=2e-07 Score=56.35 Aligned_cols=64 Identities=23% Similarity=0.454 Sum_probs=43.4
Q ss_pred EEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEec--ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 90 INLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEK--QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 90 ~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.|.|.+.+. |.+ .+.|++++..+..... ......++ ....+.|.+.....+|.|.|+|.|.|.
T Consensus 2 ~~L~C~v~g~~P~~--~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~ 68 (82)
T cd05759 2 YNLTCRARGAKPAA--EIIWFRDGEVLDGATY-SKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNE 68 (82)
T ss_pred EEEEEEEeCccCCC--EEEEEECCEEccCcee-eeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCc
Confidence 6899999985 554 8999999987753221 11111111 112356778777778889999999997
No 157
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.66 E-value=1.4e-07 Score=58.33 Aligned_cols=59 Identities=19% Similarity=0.366 Sum_probs=38.8
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v 69 (207)
|.||+.++... ..+.|+.+..++ ....|.|.+++.+|+|.|+|.|.|..+ ..+++.|.+
T Consensus 31 v~W~k~~g~~~--------~~~~r~~~~~~g--~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 31 IDWYNPQGEKI--------VSSQRVVVQKEG--VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred EEEEeCCCeEe--------cCCCCEEEEeCC--CeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 57997543211 224566654332 345899999999999999999998533 245555554
No 158
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.66 E-value=1.3e-07 Score=58.30 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=39.1
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec-C-CceeeeEEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST-E-PKISIGYKLNVV 70 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~-~~~~~~~~l~v~ 70 (207)
|+|||++++...... ...+.|+... + ..|.|.+++.+|+|.|.|.+.+ . +.....+.|.|.
T Consensus 27 v~Wykq~~g~~~~~~---~~~~~r~~~~-~-----~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~ 89 (91)
T cd05871 27 VKWLFQRGGDQRKEE---VKTEERLIHT-E-----RGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI 89 (91)
T ss_pred EEEEEECCCCCcccc---ccccccEEEe-c-----CeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence 589998765332211 1124566532 2 2599999999999999999984 2 223446666664
No 159
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.65 E-value=4e-07 Score=57.00 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=41.0
Q ss_pred CeeEEccCCccceeeEEEEeC----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC--CceeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~ 68 (207)
|.|+|+..+... ...++.. .+|..+... ..+..+|.|.+++.+|+|.|.|.+... +.......|.
T Consensus 20 v~W~k~~~~~~~--~i~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~ 96 (98)
T cd05718 20 VTWMKITGGSKQ--NIAVFHPQYGISIPPSYEGRVSFLNS-SLEDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLT 96 (98)
T ss_pred EEEeeECCCCCE--EEEEEecCCCcccCcCcCceEEEeCC-CCCceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEE
Confidence 589998765221 1222211 244443322 225779999999999999999998753 3455555555
Q ss_pred E
Q psy3475 69 V 69 (207)
Q Consensus 69 v 69 (207)
|
T Consensus 97 V 97 (98)
T cd05718 97 V 97 (98)
T ss_pred e
Confidence 5
No 160
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.65 E-value=1.4e-07 Score=58.62 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=26.2
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
.|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 61 ~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 61 LLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV 94 (94)
T ss_pred eEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence 7999999999999999999984 33455555543
No 161
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.65 E-value=2e-07 Score=55.64 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=21.3
Q ss_pred EEEEcccCCCCCeEEEEEEecCC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP 59 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~ 59 (207)
+|.|.+++.+|+|.|+|.+.|..
T Consensus 39 ~L~I~~~~~~D~G~Y~C~a~N~~ 61 (77)
T cd05760 39 TLTLRSAGPDDSGLYYCCAHNAF 61 (77)
T ss_pred EEEEeeCCcccCEEEEEEEEeCC
Confidence 89999999999999999999843
No 162
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.65 E-value=1.1e-07 Score=60.32 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=40.5
Q ss_pred CeeEEccCC--ccceeeEEEEeC-----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDL--HILTVGILTYTN-----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~--~~~~~~~~~~~~-----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++ ..+......... ..||.+..+ .+.+.|+|.+++.+|+|.|.|....
T Consensus 23 v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~--~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 23 CSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS--SNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred EEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEec--CCEEEEEECCCCHHHCEEEEEEEcc
Confidence 579999987 666655544321 356775433 3688999999999999999998753
No 163
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.65 E-value=3.4e-07 Score=56.52 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=47.0
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
...+..|++++|.|.... +.. .+.|+++|........ ........+.|.+++.+|+|.|+|.+.+.
T Consensus 10 ~~vV~~G~~VtL~C~~~~-~~~--~f~l~k~g~~~~~~~~-------~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 10 SSVVPLGKPVTLRCQGPY-GAV--EYRLYREGSTFAVKKP-------PEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCccCCCCcEEEEEecCC-CCC--EEEEEECCCCcccccc-------CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 345678999999998753 233 7888988775332100 00223467999999999999999999875
No 164
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.64 E-value=2e-07 Score=54.74 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=27.8
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
.+|.|.+++.+|+|.|+|.+.|. +....++.|.|
T Consensus 36 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 36 KTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 38999999999999999999984 44566666655
No 165
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.64 E-value=1e-07 Score=61.76 Aligned_cols=57 Identities=25% Similarity=0.354 Sum_probs=42.1
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.|||+.++..+....... ..++||++..+...+.++|.|.+++.+|+|.|.|.+..
T Consensus 32 v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 32 IFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred EEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 5799998765444332211 12588988765566788999999999999999999874
No 166
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.64 E-value=1.7e-07 Score=60.96 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=40.4
Q ss_pred CeeEEccCCccceeeEEEE--------eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTY--------TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~--------~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..+....... ...+||++..+...++++|.|.+++.+|+|.|.|.+..
T Consensus 37 ~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 37 GIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVEL 101 (119)
T ss_pred EEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEc
Confidence 4799998764221111111 11368887666677789999999999999999998864
No 167
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.63 E-value=1.4e-07 Score=59.78 Aligned_cols=59 Identities=27% Similarity=0.361 Sum_probs=42.6
Q ss_pred CeeEEccCCccceeeEEEEe--------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC
Q psy3475 1 VSWIRKRDLHILTVGILTYT--------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 59 (207)
|.|||+.....+........ ..+|+.+..+...+.++|+|.+++.+|+|.|.|.+.+..
T Consensus 24 v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~ 90 (105)
T cd00099 24 IFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSG 90 (105)
T ss_pred EEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 58999876544443333322 246787766655578899999999999999999998643
No 168
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.63 E-value=5.4e-07 Score=57.31 Aligned_cols=39 Identities=28% Similarity=0.402 Sum_probs=31.2
Q ss_pred CCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEE
Q psy3475 32 GSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV 70 (207)
Q Consensus 32 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 70 (207)
..+..+|+|.+++.+|+|.|+|.+.+. ......+.|.|.
T Consensus 64 ~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 64 DPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CCCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence 446789999999999999999999864 335666677664
No 169
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.63 E-value=1.4e-07 Score=60.05 Aligned_cols=55 Identities=20% Similarity=0.372 Sum_probs=39.6
Q ss_pred CeeEEccCCccceeeEEEEeC-----CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTN-----DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.|||+.++..+....+.... ..||++.. ....+.|.|.+++.+|+|.|.|.+.+
T Consensus 33 ~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 33 LAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG--SGTDFTLTISRVEPEDAAVYYCQQYG 92 (106)
T ss_pred EEEEEECCCCCcEEEEECccccCCCCCCCEEEec--cCCEEEEEECCCChHHCEEEEEEEeC
Confidence 589999877665544432211 25777643 33577899999999999999999864
No 170
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.62 E-value=4.7e-07 Score=54.04 Aligned_cols=63 Identities=17% Similarity=0.360 Sum_probs=45.1
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.|.|...+. .|...+.|++++..+....... .... ....+.|.+.....+|.+.|+|.|.|+
T Consensus 2 ~~L~C~s~~s-kP~a~i~W~k~~~~l~~~~~~~---~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~ 65 (80)
T cd05885 2 VELTCLSPRS-KPAATLRWYRDRKELKGVISQQ---ENGKTVSVSNTIRFPVDRKDDGAILSCEASHP 65 (80)
T ss_pred EEEEEeCCCc-cCCCeEEEEECCEECCCCcccc---cCCceEEEEEEEEEEeeeccCCcEEEEEEECh
Confidence 6899998876 3333999999999885432100 0000 123467999999999999999999998
No 171
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.62 E-value=1.5e-07 Score=55.78 Aligned_cols=57 Identities=28% Similarity=0.387 Sum_probs=37.5
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v 69 (207)
|.|||++.... -..+.++....+ ..|.|.+++.+|+|.|+|.+.|... .+..+.|.|
T Consensus 15 v~W~k~~~~~~-------~~~~~~~~~~~~-----g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 15 ITWFKDFLPVD-------TTSNGRIKQLRS-----GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred EEEEECCEECc-------cCCCCCEEEcCC-----cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 57999742110 012456654332 2799999999999999999998433 355566654
No 172
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.62 E-value=1.1e-07 Score=55.03 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=27.7
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
..|.|.++..+|+|.|+|.+.|. +...++..+.+
T Consensus 31 ~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 31 HSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 38999999999999999999984 55566666655
No 173
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.62 E-value=3.7e-07 Score=58.50 Aligned_cols=75 Identities=27% Similarity=0.418 Sum_probs=50.3
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC--EE---EEe-c----------CCCceEEEEecccceEEEEEEec
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA--NV---VNY-S----------QRGGISVVTEKQTRTSRLVISKA 141 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~--~~---~~~-~----------~~~~~~~~~~~~~~~~~l~i~~~ 141 (207)
.|....+.+|+.++|.|.+.+ +.+ .+.|++.. .. +.. . ...++..... ......|.|.++
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~--~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~~ 79 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHD--NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP-SLTRSSLTIKSA 79 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCC--EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc-CCCccEEEECCC
Confidence 355677889999999999987 444 89999832 11 111 0 0112222111 124568999999
Q ss_pred ccCCCeEEEEEeecC
Q psy3475 142 VTSDSGNYTCAPSSS 156 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~ 156 (207)
+.+|+|.|.|.+.+.
T Consensus 80 ~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 80 EPEDSAVYLCASSLG 94 (110)
T ss_pred ChhhCEEEEEEeeCC
Confidence 999999999998865
No 174
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.62 E-value=1.7e-07 Score=57.91 Aligned_cols=33 Identities=39% Similarity=0.584 Sum_probs=26.7
Q ss_pred EEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNV 69 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v 69 (207)
+|.|.+++.+|+|.|.|.+.|... .+..+.|.|
T Consensus 56 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 56 TLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 799999999999999999998433 455566655
No 175
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.62 E-value=2.4e-07 Score=57.79 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=32.8
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
++++.+.. ....+.|.|.+++.+|+|.|+|.+.|. +....++.|.|
T Consensus 50 ~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 50 DGRIVVRG--HARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred cceEEEeC--CccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence 34555432 223568999999999999999999984 44566666553
No 176
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.62 E-value=1.4e-07 Score=55.91 Aligned_cols=33 Identities=36% Similarity=0.518 Sum_probs=27.3
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
+|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 41 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 41 TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 7999999999999999999984 45666666654
No 177
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.61 E-value=5.1e-07 Score=56.48 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=34.6
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC--CceeeeEEEEE
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNV 69 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v 69 (207)
+|..+. +...++.+|.|.+++.+|+|.|.|.+.+. +.....+.|.|
T Consensus 51 ~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 51 ERVTFK-NPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcEEEc-CCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 566654 44557889999999999999999999973 33555556655
No 178
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.61 E-value=3.5e-07 Score=57.21 Aligned_cols=46 Identities=28% Similarity=0.259 Sum_probs=33.0
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC--CceeeeEEEEE
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNV 69 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v 69 (207)
+|+.+. ..+.++++|.|.+++.+|+|.|.|.+... +.....+.|+|
T Consensus 49 ~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 49 RRRSIT-SLGLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CeEEEc-CCCCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 455443 34456789999999999999999999863 33455555555
No 179
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.61 E-value=1.2e-07 Score=55.98 Aligned_cols=72 Identities=32% Similarity=0.519 Sum_probs=44.7
Q ss_pred eEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEee
Q psy3475 75 KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 75 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
+...+.......+. +.|.|.+.+.+. ...+.|+ +......... .......+.|.|.++..+|.|.|+|.|.
T Consensus 4 I~~~~~~~~~~~~~-~~l~C~~~~~~~-~~~~~W~-~~~~~~~~~~------~~~~~~~~~L~i~~v~~~~~g~y~C~a~ 74 (75)
T PF13927_consen 4 ISVPPPPVVTSGGS-VTLTCSAEGGPP-PPSISWY-DSNPSFNSNS------RGSSSSNSTLTISNVTRSDNGTYTCIAS 74 (75)
T ss_dssp EEEESTSEEETTEE-EEEEEEESSEES-SEEEEEE-TEEEEEEEEE------EEEEEEEEEEEESSCCGGGTEEEEEEEE
T ss_pred EEEcCCCcEeecee-EEEEEEEccccC-CeEEEEE-ecCCceeeee------eeccceeeEEEEccCCHHhCcEEEEEEE
Confidence 33334433333333 999999999863 3389999 1111111000 0002246789999999999999999998
Q ss_pred c
Q psy3475 155 S 155 (207)
Q Consensus 155 n 155 (207)
|
T Consensus 75 N 75 (75)
T PF13927_consen 75 N 75 (75)
T ss_dssp E
T ss_pred C
Confidence 6
No 180
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.60 E-value=2.8e-07 Score=57.95 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=32.7
Q ss_pred CeEEEeec-CCCCcEEEEEcccCCCCCeEEEEEEecCCc-eeeeEEEEE
Q psy3475 23 LRFTSLHS-DGSDEWTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNV 69 (207)
Q Consensus 23 ~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v 69 (207)
+|+.+..+ ...+..+|.|.+++.+|+|.|+|.+.+.+. ....+.|+|
T Consensus 51 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 51 GRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred ceEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 56665432 234578999999999999999999986443 344444443
No 181
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.60 E-value=1.4e-06 Score=56.31 Aligned_cols=79 Identities=22% Similarity=0.428 Sum_probs=50.1
Q ss_pred cCcceEEecCCcEEEEEEEeeCCC--CCcEEEEEeCC------EE-EEecC-------C----CceEEEEecccceEEEE
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPD--PPSFIYWYRGA------NV-VNYSQ-------R----GGISVVTEKQTRTSRLV 137 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~~W~~~~------~~-~~~~~-------~----~~~~~~~~~~~~~~~l~ 137 (207)
.|..+.+..|+.++|.|.+..... ....+.|++.. .. +.... . .|+....+.......|.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 356677889999999999876432 22369998621 11 11110 0 11111111123346899
Q ss_pred EEecccCCCeEEEEEeecC
Q psy3475 138 ISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 138 i~~~~~~d~g~Y~C~~~n~ 156 (207)
|.+++.+|+|.|.|.+.|.
T Consensus 84 I~~v~~~D~G~Y~C~v~~~ 102 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNP 102 (116)
T ss_pred EeeCCcccCEEEEEEEEeC
Confidence 9999999999999999987
No 182
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.60 E-value=2.5e-07 Score=57.30 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=27.6
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecC-Cc-eeeeEEEE
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTE-PK-ISIGYKLN 68 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~-~~-~~~~~~l~ 68 (207)
...+|.|.+++.+|+|.|+|.+.|. +. ...++.|+
T Consensus 55 ~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 55 VRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred CEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence 4568999999999999999999985 33 45555554
No 183
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.60 E-value=5.7e-07 Score=57.69 Aligned_cols=69 Identities=35% Similarity=0.404 Sum_probs=47.0
Q ss_pred CeeEEccCCccceeeEEEE----------eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTY----------TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~ 68 (207)
+.|||+............. ...+|+.+..+...+.++|.|.+++.+|+|.|.|.+..... ....+.|.
T Consensus 34 v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~ 113 (114)
T PF07686_consen 34 VYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLT 113 (114)
T ss_dssp EEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEE
T ss_pred EEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEE
Confidence 5799987654433322111 11477777777777899999999999999999999986422 34444544
Q ss_pred E
Q psy3475 69 V 69 (207)
Q Consensus 69 v 69 (207)
|
T Consensus 114 V 114 (114)
T PF07686_consen 114 V 114 (114)
T ss_dssp E
T ss_pred C
Confidence 3
No 184
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.60 E-value=1.2e-07 Score=57.09 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=26.9
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLN 68 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 68 (207)
.+.|.|.+++.+|+|.|+|.|.|. +.....+.+.
T Consensus 45 ~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 45 HGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 457999999999999999999984 4455555443
No 185
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.60 E-value=1.8e-07 Score=54.65 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=29.5
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEE
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKL 67 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l 67 (207)
+.++.+..+. .|.|.+++.+|+|.|+|.+.|. +....++.|
T Consensus 27 ~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 27 SGKFHISPEG-----YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CCCEEECCCC-----EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 4556544322 7999999999999999999984 444554443
No 186
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.59 E-value=9.1e-07 Score=57.10 Aligned_cols=79 Identities=22% Similarity=0.386 Sum_probs=50.1
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCC--CcEEEEEeC----CE--EEE-ecC------C----CceEEEEecccceEEEEE
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDP--PSFIYWYRG----AN--VVN-YSQ------R----GGISVVTEKQTRTSRLVI 138 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~--~~~~~W~~~----~~--~~~-~~~------~----~~~~~~~~~~~~~~~l~i 138 (207)
.+..+.+..|+.++|.|.+...+.. ...+.|++. +. .+. ... . .++....+.......|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 3566778899999999998764321 226999741 22 121 111 0 111111111234567999
Q ss_pred EecccCCCeEEEEEeecC
Q psy3475 139 SKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 139 ~~~~~~d~g~Y~C~~~n~ 156 (207)
.+++.+|+|.|+|.+.|.
T Consensus 84 ~~v~~~D~G~Y~C~v~~~ 101 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNP 101 (115)
T ss_pred eeCChhhCEEEEEEEEeC
Confidence 999999999999999987
No 187
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.59 E-value=8.1e-07 Score=55.13 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=35.3
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC--CceeeeEEEEE
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNV 69 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v 69 (207)
+|..+. +.+.++.+|.|.|++.+|+|.|+|.+.+. +....+..|+|
T Consensus 48 ~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 48 GRVSFK-NYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CcEEEc-CCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 566654 34556889999999999999999999863 45666666665
No 188
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.58 E-value=2.1e-07 Score=54.60 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=26.9
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
.|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 37 ~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 37 TLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred EEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 7999999999999999999984 44556666554
No 189
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.58 E-value=3.5e-07 Score=56.26 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=35.1
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEE
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNV 69 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v 69 (207)
+.++.+.... ..++|.|.+++.+|+|.|+|.+.+.. .....+.|.|
T Consensus 44 ~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 44 SQRYQIESDG--GSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp SSSEEEEEET--TEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeeeeeeccc--ceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 5666665544 67799999999999999999999853 3556666654
No 190
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.58 E-value=3.6e-07 Score=56.92 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=34.2
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEE
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNV 69 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 69 (207)
++||.+.. .....++|.|.+++.+|+|.|+|.+.........+.|.|
T Consensus 49 ~~r~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~v 95 (95)
T cd05717 49 DNRIQLVN-FSANELSISISNVSLSDEGRYTCSLYTMPVQTAKATVTV 95 (95)
T ss_pred cCcEEEEc-CCCCeeEEEEccCCcccCEEEEEEEecCCCceEEEEEEC
Confidence 57887643 233567899999999999999999986544455555543
No 191
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.57 E-value=3.9e-07 Score=54.24 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=28.1
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV 70 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 70 (207)
.|.|.+++.+|+|.|+|.+.|. +.....+.|.|.
T Consensus 40 ~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 40 ELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred EEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 7999999999999999999984 445666777664
No 192
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.57 E-value=3.6e-07 Score=56.91 Aligned_cols=69 Identities=19% Similarity=0.355 Sum_probs=47.7
Q ss_pred eEEecCCcEEEEEEEee------C---CCCCcEEEEEeCCEEEEecCC-----CceEEEEecccceEEEEEEecccCCCe
Q psy3475 82 LYIKSGSDINLTCVVLE------T---PDPPSFIYWYRGANVVNYSQR-----GGISVVTEKQTRTSRLVISKAVTSDSG 147 (207)
Q Consensus 82 ~~~~~g~~~~l~C~~~~------~---~~~~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g 147 (207)
..+.+|+.+.|.|.... . ......+.|++++..+..... .|+. .....|.|.++..+|+|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~------~~~~~Lwf~Pa~~eDSG 83 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMS------KEEDSIWFRPAELQDSG 83 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEE------EeCCEEEEEeCChhhCe
Confidence 44678999999998621 0 111227899998754433221 1222 23568999999999999
Q ss_pred EEEEEeecC
Q psy3475 148 NYTCAPSSS 156 (207)
Q Consensus 148 ~Y~C~~~n~ 156 (207)
.|+|.+.|.
T Consensus 84 ~Y~C~~rN~ 92 (104)
T cd05896 84 LYTCVLRNS 92 (104)
T ss_pred EEEEEECCC
Confidence 999999998
No 193
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.57 E-value=2.4e-07 Score=57.32 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=37.5
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 68 (207)
|.|||++... ..+.++.+....+ ...+|.|.+++.+|+|.|+|.+.|. +.....+.|.
T Consensus 33 v~W~k~g~~l---------~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05737 33 VSWLKNDQAL---------ALSDHYNVKVEQG-KYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVS 91 (92)
T ss_pred EEEEECCEEC---------ccCCCEEEEEcCC-CEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEe
Confidence 5798864211 1234555443222 3457999999999999999999983 4455555544
No 194
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.56 E-value=3.1e-07 Score=57.78 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=29.3
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV 70 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 70 (207)
.+|.|.+++.+|+|.|+|.|.|. +..+.++.|.|.
T Consensus 65 s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 65 SKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred cEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 48999999999999999999984 456677777764
No 195
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.55 E-value=8.3e-07 Score=57.20 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=31.1
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 59 (207)
+|....++...++.+|.|.+++.+|+|.|+|.+.+.+
T Consensus 67 ~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p 103 (116)
T cd05879 67 ERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPP 103 (116)
T ss_pred CceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCC
Confidence 4666666666788899999999999999999999744
No 196
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.55 E-value=8.9e-07 Score=55.98 Aligned_cols=33 Identities=27% Similarity=0.253 Sum_probs=26.9
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 59 (207)
.+|..+..++ +|.|.+++.+|+|.|+|.+.+..
T Consensus 61 ~gR~~~~~ng-----SL~I~~v~~~D~G~Y~~~v~~~~ 93 (105)
T cd05774 61 SGRETIYPNG-----SLLIQNVTQKDTGFYTLQTITTN 93 (105)
T ss_pred CCcEEEeCCC-----cEEEecCCcccCEEEEEEEEeCC
Confidence 3666666544 89999999999999999998743
No 197
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.55 E-value=1.3e-06 Score=54.27 Aligned_cols=66 Identities=27% Similarity=0.391 Sum_probs=42.2
Q ss_pred CeeEEccCCccceeeEEEEeC----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 69 (207)
|+|.|..++... .+.+|.. .+|...... ...+.+|.|.|++.+|+|.|+|.+...+.-..+..+.|
T Consensus 18 V~W~k~~~~~~~--~iavy~~~~g~~~~~~y~~Rv~f~~~-~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 18 VSWTKHNGSHKE--NIAVYHPIYGMHIEDKYRGRVYFLNS-TREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred EEEEEcCCCCCc--eEEEEECCCCCEECccccCeEEEecC-CCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 579887543222 2334322 256665432 23577999999999999999999987554444444444
No 198
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.55 E-value=2.9e-07 Score=55.24 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=24.5
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLN 68 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 68 (207)
+|.|.+++.+|+|.|+|.+.|. +.....+.|.
T Consensus 46 ~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~ 78 (79)
T cd04973 46 EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN 78 (79)
T ss_pred EEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence 7999999999999999999873 3344444443
No 199
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.55 E-value=4.1e-07 Score=55.54 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=32.3
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
.|+.+.... ....|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 41 ~r~~~~~~~--~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 41 GRVRVESYK--DLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred CeEEEEEcC--CeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 456554332 3558999999999999999999984 44555555543
No 200
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.54 E-value=4.4e-07 Score=55.67 Aligned_cols=33 Identities=36% Similarity=0.451 Sum_probs=27.7
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
.|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 54 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 54 VLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred EEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 7999999999999999999984 45666666665
No 201
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.53 E-value=5.9e-07 Score=53.68 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=26.2
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKL 67 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l 67 (207)
.+.|.|.+++.+|+|.|+|.|.|. +....++.+
T Consensus 43 ~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 76 (79)
T cd05855 43 HGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA 76 (79)
T ss_pred EEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence 458999999999999999999984 445555444
No 202
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.53 E-value=5.2e-07 Score=56.17 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=28.7
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV 70 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 70 (207)
.|.|.+++.+|+|.|+|.+.|. +.....+.|.|.
T Consensus 59 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 59 EMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred EEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 7999999999999999999984 456677777764
No 203
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.53 E-value=6.7e-07 Score=56.23 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=29.3
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV 70 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 70 (207)
..|.|.++..+|+|.|+|.|.|. +.....+.|.|.
T Consensus 65 ~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 65 SELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred EEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 47999999999999999999984 556777777764
No 204
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.53 E-value=3.8e-07 Score=56.45 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=36.6
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 68 (207)
+.|||++... ..+.++.+.... ....+|.|.+++.+|+|.|+|.+.|. +.....+.|.
T Consensus 33 i~W~k~~~~~---------~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05891 33 VIWFKNDQDI---------ELSEHYSVKLEQ-GKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVS 91 (92)
T ss_pred EEEEECCEEC---------CCCCCEEEEEcC-CCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEE
Confidence 5799974311 123445433222 22357999999999999999999984 3444444443
No 205
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.52 E-value=2e-06 Score=51.54 Aligned_cols=65 Identities=20% Similarity=0.366 Sum_probs=44.2
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.|.|.+.+. .|...|.|++++..+...... ......+....+.|.+.....+|...|+|+|.|+
T Consensus 2 ~~L~C~s~gS-kP~A~I~W~k~~~~l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~ 66 (82)
T cd05883 2 IELNCTAMAS-KPAATIRWFKGNKELTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHP 66 (82)
T ss_pred EEEEEEecCC-CCCCEEEEEECCEECcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCc
Confidence 5799999886 444499999999887543210 0001111234577888777777777999999997
No 206
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.52 E-value=3.1e-07 Score=53.93 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=26.5
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
+|.|.+++.+|+|.|+|.+.|. +.......+.+
T Consensus 36 ~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 36 SLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred EEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 7999999999999999999984 44555555554
No 207
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.51 E-value=6.9e-07 Score=55.87 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=28.3
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
.+.|.|.+++.+|+|.|+|.+.|. +....++.|.|
T Consensus 62 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 62 VSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence 458999999999999999999984 45666666654
No 208
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.51 E-value=7.5e-07 Score=53.00 Aligned_cols=25 Identities=36% Similarity=0.701 Sum_probs=22.3
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
....|.|.+++.+|+|.|+|.+.|.
T Consensus 42 ~~~~L~I~~~~~~DsG~Y~C~a~N~ 66 (76)
T cd05895 42 KSSELQISKASLADNGEYKCMVSSK 66 (76)
T ss_pred cEEEEEECcCCcccCEEEEEEEEeC
Confidence 3458999999999999999999984
No 209
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.49 E-value=8.8e-07 Score=52.70 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=27.6
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
+|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 42 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 42 ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7999999999999999999984 55666666665
No 210
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.49 E-value=1.5e-06 Score=53.67 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=35.8
Q ss_pred CeeEEccCCccceeeEE-------EE--eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC
Q psy3475 1 VSWIRKRDLHILTVGIL-------TY--TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~-------~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 59 (207)
|.||++........... .. ...+|+.+..+ ++|.|.+++.+|+|.|+|.+....
T Consensus 18 i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-----~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 18 ITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-----GSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred EEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-----ceEEEccCCchhcEEEEEEEEcCC
Confidence 57999866543222111 11 11366665443 489999999999999999998643
No 211
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.49 E-value=4.9e-07 Score=55.02 Aligned_cols=35 Identities=37% Similarity=0.696 Sum_probs=28.4
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
..+|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 50 ~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 50 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 447999999999999999999984 55666666654
No 212
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.49 E-value=3.3e-06 Score=54.03 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=46.1
Q ss_pred cCCcEEEEEEEeeCCCC----------CcEEEEEeC--CE---EEEe---------cCCCceEEEEec-ccceEEEEEEe
Q psy3475 86 SGSDINLTCVVLETPDP----------PSFIYWYRG--AN---VVNY---------SQRGGISVVTEK-QTRTSRLVISK 140 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~~~----------~~~~~W~~~--~~---~~~~---------~~~~~~~~~~~~-~~~~~~l~i~~ 140 (207)
.|++++|.|.+.....+ ...|.|++. +. .+.. .-+.|+...... ......|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 38999999999864311 238999973 21 1111 111233332211 23567899999
Q ss_pred cccCCCeEEEEEeecC
Q psy3475 141 AVTSDSGNYTCAPSSS 156 (207)
Q Consensus 141 ~~~~d~g~Y~C~~~n~ 156 (207)
++.+|+|.|.|.+.+.
T Consensus 81 l~~sDsG~Y~C~V~~g 96 (112)
T cd05900 81 LRSNDSGTYRCEVMHG 96 (112)
T ss_pred cccccCEEEEEEEecC
Confidence 9999999999999987
No 213
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.48 E-value=3e-06 Score=53.84 Aligned_cols=71 Identities=24% Similarity=0.353 Sum_probs=45.5
Q ss_pred cCCcEEEEEEEeeCC----CCCcEEEEEeCC-----E-EEEecCC--------CceEEEEe-cccceEEEEEEecccCCC
Q psy3475 86 SGSDINLTCVVLETP----DPPSFIYWYRGA-----N-VVNYSQR--------GGISVVTE-KQTRTSRLVISKAVTSDS 146 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~----~~~~~~~W~~~~-----~-~~~~~~~--------~~~~~~~~-~~~~~~~l~i~~~~~~d~ 146 (207)
.|+.++|.|.+...+ .....+.|++.. . .+..... .+-+.... .......|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 388999999998753 122389999851 1 1111011 11111111 123567899999999999
Q ss_pred eEEEEEeecC
Q psy3475 147 GNYTCAPSSS 156 (207)
Q Consensus 147 g~Y~C~~~n~ 156 (207)
|.|.|.+.+.
T Consensus 81 G~Y~C~v~~~ 90 (106)
T cd05714 81 GRYRCEVIDG 90 (106)
T ss_pred EEEEEEEEcC
Confidence 9999999987
No 214
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.48 E-value=5.2e-07 Score=52.71 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=24.2
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKL 67 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l 67 (207)
.|.|.+++.+|+|.|+|.+.|. +.......+
T Consensus 35 ~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~ 66 (70)
T cd05864 35 HLTIYEVTEKDAGNYTVVLTNPITKEEQRHTF 66 (70)
T ss_pred EEEECcCCHHHCEEEEEEEEECCCceeeEEEE
Confidence 7999999999999999999984 333333333
No 215
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.48 E-value=1e-06 Score=55.87 Aligned_cols=74 Identities=27% Similarity=0.498 Sum_probs=49.1
Q ss_pred EEecCCcEEEEEEEeeCCCCCcEEEEEeCCE-----EEEe----------cCCCceEEEEecccceEEEEEEecccCCCe
Q psy3475 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGAN-----VVNY----------SQRGGISVVTEKQTRTSRLVISKAVTSDSG 147 (207)
Q Consensus 83 ~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~-----~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 147 (207)
.+..|+.++|.|.+... .....+.|++... .+.. ....++....+.......|.|.+++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~-~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGS-FSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCC-cCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 45689999999999875 1223789998322 1111 111233333222224568999999999999
Q ss_pred EEEEEeecCC
Q psy3475 148 NYTCAPSSSD 157 (207)
Q Consensus 148 ~Y~C~~~n~~ 157 (207)
.|.|.+.+..
T Consensus 81 ~Y~C~v~~~~ 90 (105)
T cd00099 81 VYYCAVSLSG 90 (105)
T ss_pred EEEEEEecCC
Confidence 9999998863
No 216
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.47 E-value=3.9e-06 Score=54.27 Aligned_cols=76 Identities=22% Similarity=0.392 Sum_probs=50.4
Q ss_pred CcceEEecCCcEEEEEEEee--CCCCCcEEEEEeC--CE-E---EEec-----------CCCceEEEEecccceEEEEEE
Q psy3475 79 NSELYIKSGSDINLTCVVLE--TPDPPSFIYWYRG--AN-V---VNYS-----------QRGGISVVTEKQTRTSRLVIS 139 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~--~~~~~~~~~W~~~--~~-~---~~~~-----------~~~~~~~~~~~~~~~~~l~i~ 139 (207)
+..+.+..|+.++|.|.+.+ .+.+ .+.|++. +. + +... ...++....+.......|.|.
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~--~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTT--YIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCcccc--EEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 45566778999999999977 3444 8999983 21 1 1111 122333322222246789999
Q ss_pred ecccCCCeEEEEEeecC
Q psy3475 140 KAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 140 ~~~~~d~g~Y~C~~~n~ 156 (207)
+++.+|+|.|.|.+...
T Consensus 83 ~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 83 NLEKEDSATYYCAYWES 99 (116)
T ss_pred ECCHHHCEEEEEEEecC
Confidence 99999999999988653
No 217
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.47 E-value=2.9e-07 Score=56.77 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=28.5
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
..|.|.+++.+|+|.|+|.|.|. +....++.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence 47999999999999999999984 45666777766
No 218
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.46 E-value=5.4e-07 Score=56.04 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=47.6
Q ss_pred ecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCC-CceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR-GGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 85 ~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
..|+.+.|.|.+.+..++...+.|+++|..+..... .......++ ....+.|.+......+.+.|+|.|.+.
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~ 84 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHE 84 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeC
Confidence 468899999999998544448999999987754322 111111111 112345666666667999999999987
No 219
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.46 E-value=5.2e-07 Score=55.85 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=20.1
Q ss_pred EEEEcccCCCCCeEEEEEEec
Q psy3475 37 TLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
.|.|.+++.+|+|.|+|.+.+
T Consensus 56 ~L~I~~v~~~D~G~YtC~~~~ 76 (95)
T cd05897 56 YLHIIDVSLNDSGYYTCKLQF 76 (95)
T ss_pred EEEEEEcChhhCEEEEEEEEE
Confidence 699999999999999999987
No 220
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.45 E-value=7.1e-07 Score=52.78 Aligned_cols=32 Identities=25% Similarity=0.515 Sum_probs=25.7
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLN 68 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 68 (207)
+|.|.+++.+|+|.|+|.+.|. +.....+.|.
T Consensus 41 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 41 TLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred EEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 7999999999999999999984 4455555554
No 221
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.45 E-value=4e-06 Score=53.63 Aligned_cols=71 Identities=24% Similarity=0.342 Sum_probs=45.7
Q ss_pred cCCcEEEEEEEeeCCCC--------CcEEEEEeC--CEE---EE-e--------cCCCceEEEEe-cccceEEEEEEecc
Q psy3475 86 SGSDINLTCVVLETPDP--------PSFIYWYRG--ANV---VN-Y--------SQRGGISVVTE-KQTRTSRLVISKAV 142 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~~~--------~~~~~W~~~--~~~---~~-~--------~~~~~~~~~~~-~~~~~~~l~i~~~~ 142 (207)
.|+.++|.|.+...+.+ ...+.|++. ++. +. . .-+.|+..... .......|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 38899999999775421 247999984 221 10 0 11122222111 12345789999999
Q ss_pred cCCCeEEEEEeecC
Q psy3475 143 TSDSGNYTCAPSSS 156 (207)
Q Consensus 143 ~~d~g~Y~C~~~n~ 156 (207)
.+|+|.|.|.+...
T Consensus 81 ~sD~G~Y~C~v~~~ 94 (110)
T cd05878 81 SSDSGVYRCEVMHG 94 (110)
T ss_pred hhhCEEEEEEEEeC
Confidence 99999999999876
No 222
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.45 E-value=1.2e-06 Score=54.22 Aligned_cols=56 Identities=23% Similarity=0.447 Sum_probs=36.8
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKL 67 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l 67 (207)
|.|||++.. ...+.|+.+.... ..++|.|.+++.+|+|.|.|.+.|. +.....+.|
T Consensus 35 v~W~k~g~~---------l~~~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 35 VTWMREGQI---------IVSSQRHQITSTE--YKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred EEEEECCEE---------CCCCCcEEEEEcC--CeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 579886421 1123456554322 3468999999999999999999984 444544443
No 223
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.43 E-value=3e-06 Score=53.26 Aligned_cols=70 Identities=26% Similarity=0.440 Sum_probs=43.2
Q ss_pred CCcEEEEEEEeeCCC-CCcEEEEEeCC--EEEEe-c------------CCCceEEEEec-ccceEEEEEEecccCCCeEE
Q psy3475 87 GSDINLTCVVLETPD-PPSFIYWYRGA--NVVNY-S------------QRGGISVVTEK-QTRTSRLVISKAVTSDSGNY 149 (207)
Q Consensus 87 g~~~~l~C~~~~~~~-~~~~~~W~~~~--~~~~~-~------------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y 149 (207)
|+.+.|.|....... ....+.|++.. ..+.. . ...|+....+. .....+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 688999999864321 11268898743 22111 0 01122221111 12346899999999999999
Q ss_pred EEEeecC
Q psy3475 150 TCAPSSS 156 (207)
Q Consensus 150 ~C~~~n~ 156 (207)
+|.+.+.
T Consensus 81 ~C~v~~~ 87 (100)
T cd05713 81 TCFFQSD 87 (100)
T ss_pred EEEEecC
Confidence 9999986
No 224
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.43 E-value=4.4e-06 Score=54.03 Aligned_cols=78 Identities=24% Similarity=0.468 Sum_probs=51.2
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEE---EEe-------cCCCceEEEEecccceEEEEEEecccCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANV---VNY-------SQRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~---~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.+..+.+..|+.++|.|...... ....+.|++. +.. +.. ....++....+.......|.|.+++.+|
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~-~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSW-TNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCC-CceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 35566788999999999987642 2237999972 211 111 1123343332222345789999999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
+|.|.|.+...
T Consensus 84 sg~Y~C~~~~~ 94 (116)
T cd07706 84 SAKYFCALSTL 94 (116)
T ss_pred CEEEEEEEECC
Confidence 99999998854
No 225
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.43 E-value=3.9e-06 Score=53.32 Aligned_cols=70 Identities=19% Similarity=0.318 Sum_probs=44.9
Q ss_pred cCCcEEEEEEEeeCC----CCCcEEEEEeCCE------E-EEec---------CCCceEEEEecccceEEEEEEecccCC
Q psy3475 86 SGSDINLTCVVLETP----DPPSFIYWYRGAN------V-VNYS---------QRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~----~~~~~~~W~~~~~------~-~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.|+.++|.|.+...+ .....|.|++... . +... ...++..... ......|.|.+++.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA-HDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC-CCCcEEEEEccCChHH
Confidence 388999999987753 2233799998421 1 1110 1122222110 1235689999999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
+|.|.|.+.+.
T Consensus 80 sG~Y~C~v~~~ 90 (106)
T cd05877 80 YGRYRCEVIDG 90 (106)
T ss_pred CEEEEEEEEec
Confidence 99999999887
No 226
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.42 E-value=1.7e-06 Score=53.01 Aligned_cols=33 Identities=36% Similarity=0.526 Sum_probs=27.6
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
.|.|.+++.+|+|.|+|.+.|. +.......|.|
T Consensus 54 ~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 54 VLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred EEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 8999999999999999999984 44566666665
No 227
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.42 E-value=1.2e-06 Score=53.75 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=36.8
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC--ceeeeEEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVV 70 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~ 70 (207)
+.|||++........ ...++... .+ .|.|.+++.+|+|.|.|.+.+.. ....++.|.|.
T Consensus 27 i~W~k~~~~~~~~~~-----~~~~~~~~--~~----~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~ 87 (89)
T cd04979 27 VVWLFQGGPLQRKEE-----PEERLLVT--ED----GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL 87 (89)
T ss_pred EEEEECCcccccccC-----cCceEEEc--CC----CEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence 579998653221100 12344432 22 49999999999999999998643 34555566553
No 228
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.42 E-value=1.3e-06 Score=52.25 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=26.2
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|+.+.... +...|.|.+++.+|+|.|+|.+.|.
T Consensus 31 ~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~ 64 (78)
T cd05743 31 ARVSITSEG--GYGTLTIRDVKESDQGAYTCEAINT 64 (78)
T ss_pred CCEEEEECC--CEEEEEECCCChHHCEEEEEEEEec
Confidence 455544322 3468999999999999999999884
No 229
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.41 E-value=1.6e-06 Score=51.49 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=28.0
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
..|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 41 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 41 GTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 37999999999999999999984 45666666665
No 230
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.41 E-value=5.2e-06 Score=52.75 Aligned_cols=76 Identities=17% Similarity=0.399 Sum_probs=49.6
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC-----EEEEecC-------CCceEEEEecccceEEEEEEecccCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA-----NVVNYSQ-------RGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~-----~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.|....+..|+.++|.|.+.+... ...+.|++.. ..+.... ..++... .......|.|.+++.+|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~-~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 6 SPATLSVSPGESATISCKASQSVS-SNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS--GSGTDFTLTISRVEPED 82 (106)
T ss_pred CCCcEEECCCCCEEEEEEECCCCC-CCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe--ccCCEEEEEECCCChHH
Confidence 355667889999999999876541 2278998732 1121110 1122221 12345679999999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998654
No 231
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.41 E-value=3.6e-06 Score=52.66 Aligned_cols=73 Identities=14% Similarity=0.321 Sum_probs=48.7
Q ss_pred EEecCCcEEEEEEEeeCCCCCcEEEEEeCCE-----EEE------ecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGAN-----VVN------YSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 83 ~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
.+..|++++|.|..... .....+.|++... .+. .....++....+.......|.|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~vtl~C~~~~~-~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPPK-NRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEeCCeEEEEeeCCCC-CCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 46789999999988753 2223789997421 111 11123344333323456789999999999999999
Q ss_pred EeecC
Q psy3475 152 APSSS 156 (207)
Q Consensus 152 ~~~n~ 156 (207)
.+...
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 98876
No 232
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.41 E-value=1.7e-06 Score=51.43 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=28.1
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
.|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus 42 ~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 42 TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 7999999999999999999984 45677777766
No 233
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.40 E-value=1.2e-06 Score=54.05 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=29.0
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
..|.|.+++.+|+|.|+|.+.|. +....++.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 58999999999999999999984 55677777776
No 234
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.40 E-value=1.4e-06 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=21.3
Q ss_pred EEEEcccCCCCCeEEEEEEecCC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP 59 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~ 59 (207)
.|.|.++..+|+|.|+|.+.|..
T Consensus 71 ~Lwf~Pa~~eDSG~Y~C~~rN~t 93 (104)
T cd05896 71 SIWFRPAELQDSGLYTCVLRNST 93 (104)
T ss_pred EEEEEeCChhhCeEEEEEECCCC
Confidence 79999999999999999998754
No 235
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.40 E-value=1.9e-06 Score=55.05 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=31.3
Q ss_pred cEEEEEcccC-CCCCeEEEEEEecC-CceeeeEEEEEEecc
Q psy3475 35 EWTLKIASSQ-LRDSGTYECQVSTE-PKISIGYKLNVVISK 73 (207)
Q Consensus 35 ~~~L~i~~~~-~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~ 73 (207)
...|.|.++. .+|.|.|+|.|.|. +.....+.|.|..+|
T Consensus 68 ~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 68 TSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred eeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 3589999997 69999999999984 456777788876654
No 236
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.40 E-value=9e-07 Score=53.35 Aligned_cols=34 Identities=38% Similarity=0.793 Sum_probs=27.0
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLN 68 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 68 (207)
..+|.|.+++.+|+|.|+|.+.|. +.....+.|.
T Consensus 47 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 47 KWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 358999999999999999999984 4455555554
No 237
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.40 E-value=9.5e-07 Score=53.84 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=24.9
Q ss_pred EEEEcccCCCCCeEEEEEEecCCc--eeeeEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPK--ISIGYKLN 68 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~ 68 (207)
+|.|.+++.+|+|.|+|.+.|... .+..+.|.
T Consensus 52 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 52 NLLIAEARKSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred EEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence 799999999999999999998432 34444443
No 238
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.39 E-value=3.2e-06 Score=51.30 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=28.1
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCC---ceeeeEEEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEP---KISIGYKLNVV 70 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~ 70 (207)
..+|.|.+++.+|+|.|.|.+.+.. ....++.|+|.
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 4589999999999999999998742 34556666664
No 239
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.39 E-value=8.7e-06 Score=52.89 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=50.9
Q ss_pred cCcceEEecCCcEEEEEEEeeCC----CCCcEEEEEeCC------EEEEe---------cCCCceEEEEecccceEEEEE
Q psy3475 78 GNSELYIKSGSDINLTCVVLETP----DPPSFIYWYRGA------NVVNY---------SQRGGISVVTEKQTRTSRLVI 138 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~----~~~~~~~W~~~~------~~~~~---------~~~~~~~~~~~~~~~~~~l~i 138 (207)
.|..+.+..|+.++|.|...... .....+.|++.. ..+.. ..+.|+....+.......|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 35667788999999999876432 112368999732 11110 111233332222345678999
Q ss_pred EecccCCCeEEEEEeecC
Q psy3475 139 SKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 139 ~~~~~~d~g~Y~C~~~n~ 156 (207)
.+++.+|+|.|.|++...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999988664
No 240
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.39 E-value=1.2e-06 Score=52.95 Aligned_cols=65 Identities=22% Similarity=0.330 Sum_probs=49.3
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
..++..|+.+.|.|...+. .+ .+.|++++..+..+. ++... ..-|.|..++.+|+|.|.|.+.-.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A--~v~W~~ng~~l~~~~--r~~~~------~~GLlI~~~~~~dsG~Y~C~s~E~ 69 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LA--SPVWLFNGTPLNAQF--SYRVG------TDGLLILVTSPEHSGTYRCYSEEE 69 (85)
T ss_pred EEEEecCCCEEEECCCCCC-Cc--cEEEEECCcccCCCc--ceEEe------CCCCEEEECCHhhCEEEEEEEecC
Confidence 4567889999999998774 33 799999999875432 23222 234889999999999999987744
No 241
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.36 E-value=7.6e-07 Score=55.10 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=28.5
Q ss_pred CCeEEEeecC-CCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 22 DLRFTSLHSD-GSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 22 ~~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.+|+....+. +.++++|+|.+++.+|+|.|+|.+.+.
T Consensus 50 ~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~ 87 (94)
T cd07690 50 NDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVEDK 87 (94)
T ss_pred CCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECCc
Confidence 5666655421 346788999999999999999999763
No 242
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.36 E-value=2.7e-06 Score=49.89 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=24.0
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKL 67 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l 67 (207)
+|.|.+++.+|+|.|+|.+.+. ....+...+
T Consensus 37 ~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 37 SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred EEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 7999999999999999999873 333443333
No 243
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.35 E-value=6.3e-06 Score=49.48 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=47.3
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEE-EEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV-VNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.-.+..|+.++|.|.....+.|...+.|...+.. ..... ....+|.+..+...|+|.++|.+...
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----------~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----------QDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----------CCccEEEeceeCcccCCEEEEEEEEC
Confidence 3457789999999999665554447899864432 32221 13468999999999999999999754
No 244
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.33 E-value=8.8e-06 Score=52.18 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=35.2
Q ss_pred CeEEEeecC-CCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEE
Q psy3475 23 LRFTSLHSD-GSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV 70 (207)
Q Consensus 23 ~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 70 (207)
+|..+..+. ..++.+|.|.+++.+|+|.|.|++... ......+.|.|.
T Consensus 65 gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 65 GRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 566655333 346789999999999999999999863 334566666664
No 245
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.32 E-value=1.4e-06 Score=51.54 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=21.9
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
...|.|.+++.+|+|.|+|.+.|.
T Consensus 42 ~~~L~I~~~~~~D~G~Y~C~a~N~ 65 (75)
T cd05750 42 NSELQINKAKLADSGEYTCVVENI 65 (75)
T ss_pred eEEEEEccCCcccCeEEEEEEEEc
Confidence 458999999999999999999984
No 246
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.32 E-value=3.6e-06 Score=48.13 Aligned_cols=46 Identities=30% Similarity=0.373 Sum_probs=28.9
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 55 (207)
|.|+|.+................... ..|.|.+++.+|+|.|+|.+
T Consensus 19 ~~W~~~~~~~~~~~~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 19 VTWSKNGQSLPEGSTTNRSTNSVSST---------SRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEEETTTTTSEEEEEEEEETTTEEE---------EEEEESSCTGGGTEEEEEEE
T ss_pred EEEEECCccccCcceeEeecccceee---------eEEEEccCCHHHCEEEEEEC
Confidence 57999766544333222211111111 14999999999999999986
No 247
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.31 E-value=1.6e-06 Score=52.75 Aligned_cols=33 Identities=33% Similarity=0.546 Sum_probs=26.4
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
.|.|.+++.+|+|.|+|.+.|. +....++.|.|
T Consensus 52 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 52 DLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred EEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 7999999999999999999984 44555555543
No 248
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.30 E-value=6e-06 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|.|.+++.+|+|.|+|.+.+.
T Consensus 53 ~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 53 KLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred EEEEeeCChhhCEEEEEEEEec
Confidence 8999999999999999999873
No 249
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.30 E-value=4.6e-06 Score=52.22 Aligned_cols=72 Identities=24% Similarity=0.398 Sum_probs=46.1
Q ss_pred EEecCCcEEEEEEEeeCCCCCcEEEEEeC--C-EE--EEe-c------CCCceEEEEecccceEEEEEEecccCCCeEEE
Q psy3475 83 YIKSGSDINLTCVVLETPDPPSFIYWYRG--A-NV--VNY-S------QRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 83 ~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~-~~--~~~-~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 150 (207)
.+..|++++|.|...........+.|++. + .+ +.. . ...++.... ......|.|.+++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK--SGNTASLTISGAQTEDEADYY 79 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc--cCCEEEEEECCCChhhCEEEE
Confidence 35689999999998764212226899872 2 11 111 1 011333222 235678999999999999999
Q ss_pred EEeecC
Q psy3475 151 CAPSSS 156 (207)
Q Consensus 151 C~~~n~ 156 (207)
|.+.+.
T Consensus 80 C~~~~~ 85 (98)
T cd04984 80 CQVWDS 85 (98)
T ss_pred EEEccC
Confidence 988753
No 250
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.28 E-value=7.5e-06 Score=52.39 Aligned_cols=77 Identities=29% Similarity=0.533 Sum_probs=50.9
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCE-----EEE-e-----------cCCCceEEEEecccceEEEEEEec
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN-----VVN-Y-----------SQRGGISVVTEKQTRTSRLVISKA 141 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~-----~~~-~-----------~~~~~~~~~~~~~~~~~~l~i~~~ 141 (207)
+..+.+..|+.+.|.|... .......+.|++... .+. . ....++....+.......|.|.++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp ESEEEEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred CCeEEEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 5566788999999999999 222333899987211 111 0 011222333322345678999999
Q ss_pred ccCCCeEEEEEeecC
Q psy3475 142 VTSDSGNYTCAPSSS 156 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~ 156 (207)
+.+|+|.|.|.+...
T Consensus 87 ~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTS 101 (114)
T ss_dssp SGGGEEEEEEEEEES
T ss_pred CcCcCEEEEEEEEEC
Confidence 999999999998875
No 251
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.28 E-value=4.1e-06 Score=60.55 Aligned_cols=77 Identities=23% Similarity=0.365 Sum_probs=50.2
Q ss_pred ceEEecCCcEEEEEEEeeCCC---------CCcEEEEEeCCEEEE--ecCCC-ceE-EE-EecccceEEEEEEecccCCC
Q psy3475 81 ELYIKSGSDINLTCVVLETPD---------PPSFIYWYRGANVVN--YSQRG-GIS-VV-TEKQTRTSRLVISKAVTSDS 146 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~---------~~~~~~W~~~~~~~~--~~~~~-~~~-~~-~~~~~~~~~l~i~~~~~~d~ 146 (207)
...+.+|+.+.|.|.+.+.+. ....+.|++++.... ....+ ... .. .+.......|.|.+++.+|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 355678999999999866432 223799999876421 11111 000 00 00011245899999999999
Q ss_pred eEEEEEeecCC
Q psy3475 147 GNYTCAPSSSD 157 (207)
Q Consensus 147 g~Y~C~~~n~~ 157 (207)
|.|+|.+.|..
T Consensus 111 G~Y~C~a~N~~ 121 (227)
T PHA02826 111 GIYICTISSGN 121 (227)
T ss_pred EEEEEEEEECC
Confidence 99999999973
No 252
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.28 E-value=1.2e-05 Score=50.46 Aligned_cols=68 Identities=21% Similarity=0.409 Sum_probs=42.3
Q ss_pred cEEEEEEEeeCCCC-CcEEEEEeC--C-E--EEE---e--------cCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 89 DINLTCVVLETPDP-PSFIYWYRG--A-N--VVN---Y--------SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 89 ~~~l~C~~~~~~~~-~~~~~W~~~--~-~--~~~---~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
.+.|.|........ ...+.|++. + . .+. . ..+.|.....+.......|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 57899998765322 237899982 2 1 111 0 0012233322222346689999999999999999
Q ss_pred EeecC
Q psy3475 152 APSSS 156 (207)
Q Consensus 152 ~~~n~ 156 (207)
.+.+.
T Consensus 82 ~v~~~ 86 (100)
T cd05888 82 RVITF 86 (100)
T ss_pred EEEeC
Confidence 98874
No 253
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.27 E-value=9.2e-06 Score=52.60 Aligned_cols=77 Identities=17% Similarity=0.339 Sum_probs=48.2
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEe--C-CEE--EE-e-c----------CCCceEEEEecccceEEEEEEec
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYR--G-ANV--VN-Y-S----------QRGGISVVTEKQTRTSRLVISKA 141 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~--~-~~~--~~-~-~----------~~~~~~~~~~~~~~~~~l~i~~~ 141 (207)
|....+..|+.++|.|...........+.|++ . +.+ +- . . ...++....+.......|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 45567789999999998765432122689997 2 221 10 0 0 01223332222223457999999
Q ss_pred ccCCCeEEEEEeec
Q psy3475 142 VTSDSGNYTCAPSS 155 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n 155 (207)
+.+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998764
No 254
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.27 E-value=3.4e-05 Score=48.80 Aligned_cols=72 Identities=19% Similarity=0.371 Sum_probs=48.0
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCE-----EE-EecC-----------CCceEEEEecccceEEEEEEec
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN-----VV-NYSQ-----------RGGISVVTEKQTRTSRLVISKA 141 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~-----~~-~~~~-----------~~~~~~~~~~~~~~~~l~i~~~ 141 (207)
+....+.+|+.+.|.|.. .|.....+.|+++.. .+ .... +.|... ..+.+|.|.++
T Consensus 5 ~~p~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~-----~~ngSL~I~~v 77 (105)
T cd05774 5 LVPPQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETI-----YPNGSLLIQNV 77 (105)
T ss_pred ccCCcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEE-----eCCCcEEEecC
Confidence 334456789999999864 355555899999521 11 1111 112221 23458999999
Q ss_pred ccCCCeEEEEEeecCC
Q psy3475 142 VTSDSGNYTCAPSSSD 157 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~~ 157 (207)
+.+|+|.|+|.+.+..
T Consensus 78 ~~~D~G~Y~~~v~~~~ 93 (105)
T cd05774 78 TQKDTGFYTLQTITTN 93 (105)
T ss_pred CcccCEEEEEEEEeCC
Confidence 9999999999998873
No 255
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.27 E-value=7.4e-06 Score=51.16 Aligned_cols=68 Identities=18% Similarity=0.342 Sum_probs=42.3
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCE----EEE-ecC----------CCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGAN----VVN-YSQ----------RGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~----~~~-~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
|+.++|.|....... ...+.|++... .+. ... ..+.... ........|.|.+++.+|+|.|.|
T Consensus 1 G~~vtL~C~~~~~~~-~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C 78 (97)
T cd05846 1 GGNVTLSCNLTLPEE-VLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKC 78 (97)
T ss_pred CCcEEEEEEeCCCCe-eEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEE
Confidence 788999998765422 23689987321 111 100 1111111 112355789999999999999999
Q ss_pred EeecC
Q psy3475 152 APSSS 156 (207)
Q Consensus 152 ~~~n~ 156 (207)
.+...
T Consensus 79 ~~~~~ 83 (97)
T cd05846 79 IFNTF 83 (97)
T ss_pred EEEeC
Confidence 98765
No 256
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.26 E-value=7.2e-06 Score=51.26 Aligned_cols=67 Identities=19% Similarity=0.402 Sum_probs=41.4
Q ss_pred CcEEEEEEEeeCCC-CCcEEEEEeCCE----EEE-e----------cCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 88 SDINLTCVVLETPD-PPSFIYWYRGAN----VVN-Y----------SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 88 ~~~~l~C~~~~~~~-~~~~~~W~~~~~----~~~-~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+.++|.|.+..... ....|.|++... .+. . ..+.++..... ......|.|.+++.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNS-SLEDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCC-CCCceEEEEccCCcccCEEEEE
Confidence 46899999987542 223799998432 110 0 00112211110 1145689999999999999999
Q ss_pred Eeec
Q psy3475 152 APSS 155 (207)
Q Consensus 152 ~~~n 155 (207)
.+..
T Consensus 80 ~v~~ 83 (98)
T cd05718 80 EFAT 83 (98)
T ss_pred EEEe
Confidence 9865
No 257
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.25 E-value=2.9e-06 Score=51.47 Aligned_cols=35 Identities=37% Similarity=0.558 Sum_probs=27.9
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
.+.|.|.+++.+|+|.|+|.+.|. +....++.|.|
T Consensus 48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 48 SSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 458999999999999999999874 34556666654
No 258
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.25 E-value=7.7e-06 Score=51.09 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=46.1
Q ss_pred cCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCC----CceEEE----Eec---ccceEEEEEEecccCCCeEEEEEee
Q psy3475 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR----GGISVV----TEK---QTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~----~~~~~~----~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
.|++|+|.|..... .....+.|++....+..... ...... .++ ......|.|.+++.+|+|.|.|.+.
T Consensus 3 ~G~sVtL~c~~~~~-~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 3 LGGSVTLPLNIPDG-TEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred cCCeEEEeCCCCCC-cEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 69999999987541 22337999986543221110 000000 001 2345789999999999999999998
Q ss_pred cCCCC
Q psy3475 155 SSDGA 159 (207)
Q Consensus 155 n~~~~ 159 (207)
+..+.
T Consensus 82 ~~~~~ 86 (97)
T cd05775 82 TKNGV 86 (97)
T ss_pred cCCCC
Confidence 87443
No 259
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.24 E-value=1.5e-05 Score=49.77 Aligned_cols=77 Identities=13% Similarity=0.239 Sum_probs=48.9
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCc-EEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPS-FIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.+....+.+|+.++|.|.+.+..+... .|.|++++..+........ ........++|.+.....+|...|+|+|.+.
T Consensus 7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~--~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~ 84 (100)
T cd05755 7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDN--TKSPVNAPATITITVDREDHGANFSCETELD 84 (100)
T ss_pred ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccc--cCCCceeEEEEEEecchhhCCcEEEEEEEec
Confidence 344444578999999999999643332 4899999988854322110 0001223456776655555555999999987
No 260
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.24 E-value=7.9e-06 Score=48.71 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=30.3
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccC----CCCCeEEEEEEecCCc
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQ----LRDSGTYECQVSTEPK 60 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~----~~d~G~Y~C~~~~~~~ 60 (207)
|+|||.+.... ...+.++.+....+ +|.|.++. .+|+|.|+|.+.|..+
T Consensus 15 v~W~k~g~~~~-------~~~~~~~~~~~~~~----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05875 15 FQWTRNGKFFN-------VAKDPRVSMRRRSG----TLVIDFSGGGRPEDYEGEYQCFARNNLG 67 (77)
T ss_pred EEEEECCEEcc-------CcCCCcEEEeCCCc----eEEEeccCCCCCCCCCEEEEEEEEeccc
Confidence 57999642110 11345555433333 78888764 2479999999998544
No 261
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.23 E-value=2e-05 Score=50.19 Aligned_cols=72 Identities=24% Similarity=0.471 Sum_probs=45.3
Q ss_pred EEecCCcEEEEEEEeeCCCCCcEEEEEeC--C---EE----EEecC-----------CCceEEEEecccceEEEEEEecc
Q psy3475 83 YIKSGSDINLTCVVLETPDPPSFIYWYRG--A---NV----VNYSQ-----------RGGISVVTEKQTRTSRLVISKAV 142 (207)
Q Consensus 83 ~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~---~~----~~~~~-----------~~~~~~~~~~~~~~~~l~i~~~~ 142 (207)
.+..|+.++|.|.+...... ..+.|++. | .. +.... ..++............|.|.+++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~-~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISEN-TRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred EEcCCCCEEEEEEEecCCCC-CeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 35689999999998763222 27899972 2 11 10000 11232222223345679999999
Q ss_pred cCCCeEEEEEeec
Q psy3475 143 TSDSGNYTCAPSS 155 (207)
Q Consensus 143 ~~d~g~Y~C~~~n 155 (207)
.+|+|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999998754
No 262
>PHA03376 BARF1; Provisional
Probab=98.23 E-value=7.2e-05 Score=51.40 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=50.4
Q ss_pred ceEEecCCcEEEEEEEe-eCCCCCcEEEEEeC----CEE---------E--EecCCCceEEEEecccceEEEEEEecccC
Q psy3475 81 ELYIKSGSDINLTCVVL-ETPDPPSFIYWYRG----ANV---------V--NYSQRGGISVVTEKQTRTSRLVISKAVTS 144 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~-~~~~~~~~~~W~~~----~~~---------~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 144 (207)
.+.+..|+.+.|.|... ....+...|.|++. ... . +...++++.... ...+-+|.|.+++.+
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~--~~gnvsLvI~~l~lS 97 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR--SANTFFLVVTAANIS 97 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEe--cCCeEEEEEEeeeec
Confidence 45567899999999876 33345558999993 221 1 112222333322 235678999999999
Q ss_pred CCeEEEEEeecC
Q psy3475 145 DSGNYTCAPSSS 156 (207)
Q Consensus 145 d~g~Y~C~~~n~ 156 (207)
|.|.|+|.+...
T Consensus 98 DdGtY~C~fQkg 109 (221)
T PHA03376 98 HDGNYLCRMKLG 109 (221)
T ss_pred CCceEEEEEEcC
Confidence 999999999877
No 263
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=98.23 E-value=6.3e-06 Score=52.29 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=43.6
Q ss_pred CeeEEccCCccceeeEEEEe-------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT-------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 55 (207)
++|+||.++ .++.-...+. ..+|+.+..+...+..+|+|.+++.+|++.|.|..
T Consensus 33 ~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 33 ASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred EEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEe
Confidence 479999998 5555554422 24788888888889999999999999999999965
No 264
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.22 E-value=9.4e-06 Score=50.06 Aligned_cols=64 Identities=25% Similarity=0.403 Sum_probs=43.1
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEE-----Ee-----------cCCCceEEEEecccceEEEEEEecccCCCeEEE
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVV-----NY-----------SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 150 (207)
|++|+|.|..... ....+.|++..... .. ....++.. .....|.|.+++.+|+|.|.
T Consensus 1 G~~VtL~c~~~~~--~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~-----~~~~sL~I~~l~~~DsG~Y~ 73 (92)
T cd05741 1 GESVTLPVSNLPE--NLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETI-----YPNGSLLIQNLTKEDSGTYT 73 (92)
T ss_pred CCcEEEEcccCCC--CCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEE-----cCCceEEEccCCchhcEEEE
Confidence 7889999987653 33389999854221 10 00111111 13378999999999999999
Q ss_pred EEeecCC
Q psy3475 151 CAPSSSD 157 (207)
Q Consensus 151 C~~~n~~ 157 (207)
|.+....
T Consensus 74 c~v~~~~ 80 (92)
T cd05741 74 LQIISTN 80 (92)
T ss_pred EEEEcCC
Confidence 9998874
No 265
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.21 E-value=2.2e-05 Score=48.72 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=45.2
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEee
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
.....+..|++++|.|.... .. ..+.|+++|......... ..........+.|..++.+|+|.|.|...
T Consensus 7 ~p~~vV~~G~~VTL~C~~~~-~~--~~f~l~k~g~~~~~~~~~----~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 7 HPSPVVPSGENVTLQCHSDI-RF--DRFILYKEGRSKPVLHLY----EKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred cCCCccCCCCeEEEEEecCC-CC--CEEEEEECCCCCCceecc----cccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 34455778999999997765 22 278999977642210000 00001134578999999999999999864
No 266
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.20 E-value=8.5e-06 Score=48.57 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=19.6
Q ss_pred EEEEcccCC----CCCeEEEEEEecCCc
Q psy3475 37 TLKIASSQL----RDSGTYECQVSTEPK 60 (207)
Q Consensus 37 ~L~i~~~~~----~d~G~Y~C~~~~~~~ 60 (207)
.|.|.++.. +|+|.|+|.+.|..+
T Consensus 40 ~L~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05733 40 TLVIDNMNGGRAEDYEGEYQCYASNELG 67 (77)
T ss_pred EEEEeccCCCCCcCCCEEEEEEEEcCCC
Confidence 788888754 799999999998543
No 267
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.19 E-value=9.3e-06 Score=49.94 Aligned_cols=35 Identities=11% Similarity=0.292 Sum_probs=28.1
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
...|.|.+++.+|.|.|+|.+.|. +.....+.|.|
T Consensus 55 ~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 55 IYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90 (90)
T ss_pred EEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence 458999999999999999999984 44566666653
No 268
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.19 E-value=8.3e-06 Score=49.36 Aligned_cols=34 Identities=38% Similarity=0.697 Sum_probs=26.7
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLN 68 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~ 68 (207)
.+.|.|.+++.+|+|.|.|.+.+. +....++.|.
T Consensus 50 ~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 50 KWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred EEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 457999999999999999999874 3445555554
No 269
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.17 E-value=1.2e-05 Score=48.65 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=41.0
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec---ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.|.|.+.+..++ ..+.|+++|..+..... ....... ....+.|.+......+...|+|.|.+.
T Consensus 2 ~~LtC~a~gf~P~-~~itW~kng~~l~~~~~--~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 2 MQLTCKTSGSKPA-ADIRWFKNDKEIKDVKY--LKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred EEEEEEeCCccCC-CEEEEEECCEECcCcee--eEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEech
Confidence 5799999996444 69999999998643211 0000000 122346666555566667999999997
No 270
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.15 E-value=3.2e-05 Score=49.34 Aligned_cols=70 Identities=27% Similarity=0.387 Sum_probs=44.7
Q ss_pred CCcEEEEEEEeeCCC-----CCcEEEEEeCC-----EE--E----------EecCCCceEEEEec-ccceEEEEEEeccc
Q psy3475 87 GSDINLTCVVLETPD-----PPSFIYWYRGA-----NV--V----------NYSQRGGISVVTEK-QTRTSRLVISKAVT 143 (207)
Q Consensus 87 g~~~~l~C~~~~~~~-----~~~~~~W~~~~-----~~--~----------~~~~~~~~~~~~~~-~~~~~~l~i~~~~~ 143 (207)
|.++.|.|.+.-.|. ....|.|.+.. .. + ..+-++|.....+. .....+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 778999999765432 12378998631 11 1 11122333332211 23567899999999
Q ss_pred CCCeEEEEEeecC
Q psy3475 144 SDSGNYTCAPSSS 156 (207)
Q Consensus 144 ~d~g~Y~C~~~n~ 156 (207)
+|+|.|.|.+...
T Consensus 82 ~D~G~Y~C~v~~g 94 (110)
T cd05902 82 SDSGTYRCEVVLG 94 (110)
T ss_pred HHCEEEEEEEEEC
Confidence 9999999999886
No 271
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.14 E-value=4.1e-05 Score=47.88 Aligned_cols=67 Identities=19% Similarity=0.397 Sum_probs=41.3
Q ss_pred cEEEEEEEeeCCCCC--cEEEEEeC--C--EEE-EecC----------CCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 89 DINLTCVVLETPDPP--SFIYWYRG--A--NVV-NYSQ----------RGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 89 ~~~l~C~~~~~~~~~--~~~~W~~~--~--~~~-~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
.+.|.|.....+... ..|.|.+. + ..+ .... +.|+... .......+|.|.+++.+|+|.|+|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFK-NPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEc-CCCCCcceEEEcCCccccCEEEEE
Confidence 578999988532222 25899873 1 111 1111 1222221 112345789999999999999999
Q ss_pred EeecC
Q psy3475 152 APSSS 156 (207)
Q Consensus 152 ~~~n~ 156 (207)
.+.+.
T Consensus 81 ~v~t~ 85 (99)
T cd05886 81 EFATF 85 (99)
T ss_pred EEEeC
Confidence 99994
No 272
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.14 E-value=2.5e-05 Score=48.50 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=42.3
Q ss_pred CcEEEEEEEeeCCCCCcEEEEEeCC----EEEE-ec----------CCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 88 SDINLTCVVLETPDPPSFIYWYRGA----NVVN-YS----------QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 88 ~~~~l~C~~~~~~~~~~~~~W~~~~----~~~~-~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
+++.|.|...... ....+.|.+.. ..+. .. -..|+... .......+|.|.+++.+|+|.|+|.
T Consensus 1 ~~vtL~C~~~~~~-~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~ 78 (96)
T cd05887 1 KNVTLKCRIQVNE-TITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICK 78 (96)
T ss_pred CCEEEEEEecCCC-cEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEE
Confidence 3678999987532 33478998731 1221 11 11233222 1123467899999999999999999
Q ss_pred eecC
Q psy3475 153 PSSS 156 (207)
Q Consensus 153 ~~n~ 156 (207)
+.+-
T Consensus 79 v~tf 82 (96)
T cd05887 79 AVTF 82 (96)
T ss_pred EEeC
Confidence 8765
No 273
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.12 E-value=1.3e-05 Score=48.44 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=39.8
Q ss_pred EEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEec--ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 90 INLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEK--QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 90 ~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.|.|.+.+. |.+ .+.|++++..+.... ........ ....+.|.+.....++.+.|+|.|.+.
T Consensus 2 ~~L~C~~~~~~P~~--~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~ 67 (82)
T cd05761 2 VELTCTSSGSKPAA--TIRWFKGDKELKGVK--LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHP 67 (82)
T ss_pred EEEEEEecCcCcCC--eEEEEECCEEccCce--eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeCh
Confidence 5899999887 444 999999998875321 00110010 112345566555556667999999998
No 274
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.11 E-value=1.2e-05 Score=50.71 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=44.7
Q ss_pred EecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEe----c-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTE----K-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 84 ~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+..++.++|.|.+.+..+..+.+.|+++|..+............+ + ....+.|.+..-...+...|+|.|...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 345788999999999877777899999998764321100011100 1 112244555433334556899999876
No 275
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.10 E-value=2.6e-05 Score=46.48 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=18.5
Q ss_pred EEEEcccCC----CCCeEEEEEEecCCc
Q psy3475 37 TLKIASSQL----RDSGTYECQVSTEPK 60 (207)
Q Consensus 37 ~L~i~~~~~----~d~G~Y~C~~~~~~~ 60 (207)
+|.|..+.. .|.|.|+|.|.|..+
T Consensus 40 ~l~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05874 40 TLVINIMNGEKAEAYEGVYQCTARNERG 67 (77)
T ss_pred eEEEeccccCCCCCCCEEEEEEEEcCCC
Confidence 677777654 488999999998544
No 276
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.10 E-value=5.1e-05 Score=48.51 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=44.9
Q ss_pred EEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec--ccceEEEEEEecccCCCe-EEEEEeecC
Q psy3475 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK--QTRTSRLVISKAVTSDSG-NYTCAPSSS 156 (207)
Q Consensus 83 ~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g-~Y~C~~~n~ 156 (207)
....|+.++|.|.+.+..++.+.+.|++||..+..... ......++ ....+.|.+.. ...|.+ .|+|.+...
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHR 91 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeC
Confidence 34568889999999998776679999999998753211 11111110 11234455554 333434 699999887
No 277
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.10 E-value=4.1e-06 Score=51.84 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=20.3
Q ss_pred EEEEcccCCCCCeEEEEEEec
Q psy3475 37 TLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
.|.|.+++.+|+|.|+|.|.+
T Consensus 61 ~L~fs~v~~~D~g~Y~C~A~n 81 (96)
T cd05727 61 NLYIAKVEASDRGNYSCFVSS 81 (96)
T ss_pred cEEEeecCHhhCceeEEEEEe
Confidence 899999999999999999987
No 278
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.10 E-value=2.9e-05 Score=46.00 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=41.5
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEE--ec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVT--EK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
++|.|.+.+..++.+.+.|+++|..+..... ...... ++ ....+.|.+.....++...|+|.|...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~-~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVS-TTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEE-ECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 6899999998666669999999986432111 011111 11 222345666555556677999999875
No 279
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.09 E-value=1.4e-05 Score=50.24 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=47.2
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCC-ceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRG-GISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.......++.++|.|.+.+..+....+.|+++|..+...... ......++ ....+.|.+..-...+...|+|.+...
T Consensus 9 p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 9 PSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred CCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence 3333344677899999999986666799999999887432110 00100011 112344555444444567999999886
No 280
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.09 E-value=2.3e-05 Score=48.55 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=42.8
Q ss_pred cCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEE-ec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVT-EK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
..+.++|.|.+.+..+..+.+.|.++|..+............ +. ....+.|.+..-...+...|+|.|...
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence 456689999999987667799999999875322110000010 10 112234545433334567999999876
No 281
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.08 E-value=0.00014 Score=44.94 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=40.4
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEeccc---ceEEEEEEecccCCCeEEEEEeecC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT---RTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
++.+.|.|.+.+..++...+.|.+++......... .....+... ..+.|.+ ...+.+.|+|.+.+.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~-~~~~~~~d~ty~~~s~l~v---~~~~~~~ytC~V~H~ 82 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVES-GEILPNGDGTYQLWVTLEV---PPEDKARYSCRVEHS 82 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccc-cceEECCCCeEEEEEEEEE---CCCCCCEEEEEEEeC
Confidence 67899999999986666689999998632221110 011111111 1233443 344778999999886
No 282
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.06 E-value=2.2e-05 Score=49.02 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=20.6
Q ss_pred cccCCCCCeEEEEEEecC-Cc-eeeeEEEEE
Q psy3475 41 ASSQLRDSGTYECQVSTE-PK-ISIGYKLNV 69 (207)
Q Consensus 41 ~~~~~~d~G~Y~C~~~~~-~~-~~~~~~l~v 69 (207)
..++.+|+|.|+|.+.|. +. .+..+.|.|
T Consensus 69 ~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 69 GRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred cCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 344789999999999984 33 455555554
No 283
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.06 E-value=0.00012 Score=47.03 Aligned_cols=70 Identities=24% Similarity=0.351 Sum_probs=45.5
Q ss_pred CCcEEEEEEEeeCCC---------CCcEEEEEeC-----C-----EEE----------EecCCCceEEEEec-ccceEEE
Q psy3475 87 GSDINLTCVVLETPD---------PPSFIYWYRG-----A-----NVV----------NYSQRGGISVVTEK-QTRTSRL 136 (207)
Q Consensus 87 g~~~~l~C~~~~~~~---------~~~~~~W~~~-----~-----~~~----------~~~~~~~~~~~~~~-~~~~~~l 136 (207)
|.+++|.|.+.-.|. ....|.|.+- + ..+ ....++|.....+. .....+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 678899999986542 1127889762 1 111 01222344333222 2346889
Q ss_pred EEEecccCCCeEEEEEeecC
Q psy3475 137 VISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 137 ~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.|.+++.+|+|.|.|.+...
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g 101 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHG 101 (117)
T ss_pred EEcccccccCEEEEEEEEEC
Confidence 99999999999999999887
No 284
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.05 E-value=2.4e-05 Score=47.37 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=31.0
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 59 (207)
|.|+.++... ..+.|+....++ |.|.+++.+|+|.|.|.+...+
T Consensus 27 v~W~~ng~~l---------~~~~r~~~~~~G------LlI~~~~~~dsG~Y~C~s~E~g 70 (85)
T cd05872 27 PVWLFNGTPL---------NAQFSYRVGTDG------LLILVTSPEHSGTYRCYSEEEG 70 (85)
T ss_pred EEEEECCccc---------CCCcceEEeCCC------CEEEECCHhhCEEEEEEEecCC
Confidence 5788876431 234566544333 8899999999999999998543
No 285
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.05 E-value=1.4e-05 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|.|.+++.+|+|.|+|.+.+.
T Consensus 49 ~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 49 GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cEEEeCCCHHHCEEEEEEEEec
Confidence 5999999999999999999875
No 286
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.04 E-value=0.00019 Score=44.32 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=43.7
Q ss_pred cCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.|...+|.|.+.+..++.+.+.|.++|..+. ... ......++.........-.+...+...|+|.+...
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~-~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVE-QSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcE-ECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 4666789999999877878999999999865 221 11122222222222222233456677999999876
No 287
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.01 E-value=5.4e-05 Score=47.09 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=44.7
Q ss_pred cCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEE-EecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEee
Q psy3475 78 GNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVV-NYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
+|....+..|+.++|.|.+.+. .++.+.+.|.+++... ..... ......++ ....+.|.+..-...+.-.|+|.|.
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~-~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~ 83 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ-PPESHNNATLSVTSTLNVSTDDWISGDTFQCKVT 83 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec-ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEE
Confidence 3444445568999999999999 6777799999986432 21111 00000000 1112344444333334458999998
Q ss_pred cC
Q psy3475 155 SS 156 (207)
Q Consensus 155 n~ 156 (207)
..
T Consensus 84 H~ 85 (96)
T cd07696 84 HP 85 (96)
T ss_pred CC
Confidence 87
No 288
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=98.00 E-value=0.00011 Score=45.54 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=43.5
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecc--cceEEEEEEecccCCCeEEEEEeecC
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQ--TRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|.......+..++|.|.+.+..++.+.+.|.++|..+...... .....++. ...+.|.+..-. ....|+|.|...
T Consensus 8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~-~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQK-SEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEe-ccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 4333344467789999999987777799999999875432110 01111111 112334443221 234699999876
No 289
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.00 E-value=3e-05 Score=49.83 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=47.1
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec---ccceEEEEEEecccCC-CeEEEEEee
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSD-SGNYTCAPS 154 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d-~g~Y~C~~~ 154 (207)
|....+..++.++|.|.+.+..+..+.+.|++++..+............+. ....+.|.+......+ ...|+|.+.
T Consensus 10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~ 89 (115)
T cd05769 10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQ 89 (115)
T ss_pred cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEE
Confidence 333334456789999999998767679999999987653211100111110 1123456665444434 459999998
Q ss_pred cC
Q psy3475 155 SS 156 (207)
Q Consensus 155 n~ 156 (207)
..
T Consensus 90 H~ 91 (115)
T cd05769 90 FY 91 (115)
T ss_pred Ee
Confidence 76
No 290
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.99 E-value=6.8e-05 Score=45.32 Aligned_cols=63 Identities=19% Similarity=0.334 Sum_probs=41.2
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecc----cceEEEEEEecccCCCeEEEEEeecC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQ----TRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.|.|.+.+..++ ..|.|+++|..+..... ....+.. ...+.|.+.....++...|+|.+.+.
T Consensus 2 ~~LtC~a~g~~P~-~~ItW~k~g~~l~~~~~---~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~ 68 (83)
T cd07705 2 AKLRCTSSGSKPA-ANIKWRKGDQELEGAPT---SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHE 68 (83)
T ss_pred EEEEEEecCccCC-CEeEEEECCEECCCcce---eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECc
Confidence 6799999997333 39999999987654221 1111111 11245666566667778999999998
No 291
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.98 E-value=4.9e-05 Score=48.09 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=43.6
Q ss_pred EecCCcEEEEEEEeeCCCCCcEEEEEeC--C--EE---EE-ecC------------CCceEEEEecccceEEEEEEeccc
Q psy3475 84 IKSGSDINLTCVVLETPDPPSFIYWYRG--A--NV---VN-YSQ------------RGGISVVTEKQTRTSRLVISKAVT 143 (207)
Q Consensus 84 ~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~--~~---~~-~~~------------~~~~~~~~~~~~~~~~l~i~~~~~ 143 (207)
+..|+.++|.|........ .+.|++. + .. +. ... ..++.. +.......|.|.+++.
T Consensus 3 v~~G~~vtL~C~~~~~~~~--~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~--~~~~~~~~L~I~~~~~ 78 (104)
T cd05720 3 AELGQKVELKCEVLNSSPT--GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSG--SRSSNSFVLTLKNFQK 78 (104)
T ss_pred ccCCCeEEEEEEecCCCCC--cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEE--EecCCEEEEEECCCCH
Confidence 4679999999988654223 6899972 2 11 11 111 011211 1123556799999999
Q ss_pred CCCeEEEEEeec
Q psy3475 144 SDSGNYTCAPSS 155 (207)
Q Consensus 144 ~d~g~Y~C~~~n 155 (207)
+|+|+|.|.+.+
T Consensus 79 sDsgtY~Ca~~~ 90 (104)
T cd05720 79 ENEGYYFCSVAS 90 (104)
T ss_pred HHCEEEEEEEcc
Confidence 999999998764
No 292
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=97.96 E-value=1.7e-05 Score=48.35 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=28.5
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVV 70 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~ 70 (207)
.+.|.|.+++.+|+|.|+|.+.|.. .......|.|+
T Consensus 49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~ 85 (86)
T cd05862 49 SSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85 (86)
T ss_pred eeEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence 4589999999999999999998743 35566666664
No 293
>smart00409 IG Immunoglobulin.
Probab=97.96 E-value=7.5e-05 Score=44.65 Aligned_cols=46 Identities=33% Similarity=0.421 Sum_probs=30.5
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc-eeeeEEEEE
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNV 69 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v 69 (207)
+.++....... ..+|.|.+++.+|+|.|.|.+.+... ....+.|.|
T Consensus 39 ~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00409 39 SGRFSVSRSGS--NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred CCcEEEEEcCC--eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 45555443332 55899999999999999999986332 333344443
No 294
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.96 E-value=7.5e-05 Score=44.65 Aligned_cols=46 Identities=33% Similarity=0.421 Sum_probs=30.5
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc-eeeeEEEEE
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNV 69 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v 69 (207)
+.++....... ..+|.|.+++.+|+|.|.|.+.+... ....+.|.|
T Consensus 39 ~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00410 39 SGRFSVSRSGS--NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred CCcEEEEEcCC--eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 45555443332 55899999999999999999986332 333344443
No 295
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=97.96 E-value=5.4e-05 Score=46.95 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=20.2
Q ss_pred EEEEcccC-CCCCeEEEEEEecCCc
Q psy3475 37 TLKIASSQ-LRDSGTYECQVSTEPK 60 (207)
Q Consensus 37 ~L~i~~~~-~~d~G~Y~C~~~~~~~ 60 (207)
.|.|.++. .+|+|.|+|.+.|...
T Consensus 59 ~L~i~~~~~~~D~G~Y~C~A~N~~G 83 (94)
T cd05848 59 NLIISNPSEVKDSGRYQCLATNSIG 83 (94)
T ss_pred eEEEccCCccCcCEEEEEEEEcCCC
Confidence 78998885 6999999999998533
No 296
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.92 E-value=0.00018 Score=44.63 Aligned_cols=67 Identities=21% Similarity=0.400 Sum_probs=40.8
Q ss_pred CcEEEEEEEeeCCCCCcEEEEEeCCE----EE-EecC----------CCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 88 SDINLTCVVLETPDPPSFIYWYRGAN----VV-NYSQ----------RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 88 ~~~~l~C~~~~~~~~~~~~~W~~~~~----~~-~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
++++|.|..... .....+.|.+... .+ -... ..|+..... .....+|.|.+++.+|+|.|+|.
T Consensus 1 ~~vtL~C~~~~~-~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~-~~~d~sI~i~nvt~~D~G~Y~C~ 78 (96)
T cd05889 1 EKMKLECVYPKT-GVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNS-TREDMSLSFNNATEEDVGLYCCS 78 (96)
T ss_pred CCEEEEeEcCCC-CcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecC-CCCccEEEEcCCCcccCEEEEEE
Confidence 357899988643 2334788987321 11 1111 122222211 12457899999999999999999
Q ss_pred eecC
Q psy3475 153 PSSS 156 (207)
Q Consensus 153 ~~n~ 156 (207)
+..-
T Consensus 79 ~~t~ 82 (96)
T cd05889 79 LVTY 82 (96)
T ss_pred EEeC
Confidence 8765
No 297
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.92 E-value=5.1e-05 Score=46.97 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.0
Q ss_pred EEEEcccC-CCCCeEEEEEEecCC
Q psy3475 37 TLKIASSQ-LRDSGTYECQVSTEP 59 (207)
Q Consensus 37 ~L~i~~~~-~~d~G~Y~C~~~~~~ 59 (207)
.|.|.++. .+|+|.|+|.+.|..
T Consensus 58 ~L~I~~~~~~~D~G~Y~C~A~N~~ 81 (93)
T cd05849 58 NLVINNPDKYKDAGRYVCIVSNIY 81 (93)
T ss_pred EEEECcCCcCCCCEEEEEEEEeCc
Confidence 79999985 699999999999843
No 298
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.91 E-value=0.00036 Score=43.21 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=42.7
Q ss_pred cCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccc---eEEEEEEecccCCCeEEEEEeecC
Q psy3475 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR---TSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.|+.++|.|.+.+..++...+.|+++|..+...... .....++... .+.|.+ ...+...|+|.+...
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~-~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~ 82 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVS-TELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHS 82 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCcee-cceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeC
Confidence 578899999999987777799999999876543110 0111111111 223333 344566999999886
No 299
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.90 E-value=3.3e-05 Score=46.89 Aligned_cols=22 Identities=45% Similarity=0.652 Sum_probs=20.7
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|.|.+++.+|+|.|+|.+.|.
T Consensus 53 ~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 53 ILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred EEEECCCCHHHCEEEEEEEecc
Confidence 7999999999999999999874
No 300
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.89 E-value=0.00012 Score=50.39 Aligned_cols=87 Identities=17% Similarity=0.378 Sum_probs=53.8
Q ss_pred cceEEecCCcEEEEEEEe-eCCCCCcEEEEEeCCEE-EEecC---------CCceEEEEecccceEEEEEEecccCCCeE
Q psy3475 80 SELYIKSGSDINLTCVVL-ETPDPPSFIYWYRGANV-VNYSQ---------RGGISVVTEKQTRTSRLVISKAVTSDSGN 148 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~-~~~~~~~~~~W~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 148 (207)
+...+.+|+++.|.|... +...+ .+.|.+.... ..... +.++... ......+.|.|.+++.+|+|.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~--qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~m-S~s~~~StItIknVt~sDeGc 99 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSI--LITWKKNNKTIAGYGPCGPVIVDKFKNKIEYL-SKSFNESTILIKNVSLKDNGC 99 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccc--eEEEEEcCCCEEEEecCCcEEChhhcCeEEEe-ccCCCcceEEEEeCChhhCeE
Confidence 345677899999999985 33333 7999985322 11111 1122211 112355789999999999999
Q ss_pred EEEEeecC-----CCCeEEEEEecCC
Q psy3475 149 YTCAPSSS-----DGASVVVHVLNGK 169 (207)
Q Consensus 149 Y~C~~~n~-----~~~~~~~~v~~~~ 169 (207)
|+|...-- .+....|.|....
T Consensus 100 Y~C~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 100 YTCIFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEEEEecCCCCCceeEEEEEEEchh
Confidence 99986543 2334566665433
No 301
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=97.89 E-value=7.9e-05 Score=46.20 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=19.5
Q ss_pred EEEEcccC-CCCCeEEEEEEecCC
Q psy3475 37 TLKIASSQ-LRDSGTYECQVSTEP 59 (207)
Q Consensus 37 ~L~i~~~~-~~d~G~Y~C~~~~~~ 59 (207)
.|.|.++. .+|+|.|+|.+.|..
T Consensus 59 ~L~I~~~~~~~D~G~Y~C~A~N~~ 82 (94)
T cd05850 59 NLVINNPQKARDAGSYQCLAINRC 82 (94)
T ss_pred eEEEccCCccCcCEEEEEEEEcCc
Confidence 69998865 599999999999843
No 302
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.88 E-value=0.00018 Score=42.86 Aligned_cols=65 Identities=23% Similarity=0.501 Sum_probs=39.6
Q ss_pred cEEEEEEEeeCCCCCcEEEEEeCC--E---EEEe-----------cCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 89 DINLTCVVLETPDPPSFIYWYRGA--N---VVNY-----------SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 89 ~~~l~C~~~~~~~~~~~~~W~~~~--~---~~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
.+.|.|.+.....+...+.|++.. . .+.. ....++............|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 367999887754432368898732 1 1111 11122332222124567899999999999999996
Q ss_pred e
Q psy3475 153 P 153 (207)
Q Consensus 153 ~ 153 (207)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 303
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.87 E-value=0.00052 Score=42.47 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=41.4
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec---ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
++..+|.|.+.+..+..+.+.|.++|..+...... ....... ....+.|.+. ..+...|+|.+...
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~-~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSE-TRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEE-eeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 56679999999987777799999999876432110 0111111 1112344443 34556999999876
No 304
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.86 E-value=9.4e-05 Score=46.23 Aligned_cols=45 Identities=22% Similarity=0.171 Sum_probs=29.0
Q ss_pred CeEEEeecC--CCCcEEEEEcccCCC-CCeEEEEEEecC-CceeeeEEE
Q psy3475 23 LRFTSLHSD--GSDEWTLKIASSQLR-DSGTYECQVSTE-PKISIGYKL 67 (207)
Q Consensus 23 ~r~~~~~~~--~~~~~~L~i~~~~~~-d~G~Y~C~~~~~-~~~~~~~~l 67 (207)
.|+.+.... .....+|.|.++..+ |.|.|.|.|.|. +.....+.|
T Consensus 49 ~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 49 GRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred CCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 456554322 112358999999994 599999999984 344444443
No 305
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.85 E-value=0.00014 Score=43.87 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=42.9
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEE-Eec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV-TEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
++.+.|.|.+.+..+..+.|.|++++..+........... .++ ....+.|.+. ..+...|+|.|...
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~ 76 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHE 76 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEET
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEEC
Confidence 7889999999998777779999999987643211111110 011 1122345554 55666999999876
No 306
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.83 E-value=9.6e-05 Score=42.17 Aligned_cols=65 Identities=31% Similarity=0.529 Sum_probs=42.1
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.|.|.+.+.+.. .+.|++++.......................|.+.++...|.|.|.|.+.+.
T Consensus 1 ~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 65 (74)
T cd00096 1 VTLTCLASGPPPP--TITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNS 65 (74)
T ss_pred CEEEEEecCCCCC--cEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecC
Confidence 3689999883333 8999997765433211000000001234567899999999999999999886
No 307
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.80 E-value=9.3e-05 Score=45.94 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=22.6
Q ss_pred EEEEccc-----CCCCCeEEEEEEecC-Cc-e-eeeEEEE
Q psy3475 37 TLKIASS-----QLRDSGTYECQVSTE-PK-I-SIGYKLN 68 (207)
Q Consensus 37 ~L~i~~~-----~~~d~G~Y~C~~~~~-~~-~-~~~~~l~ 68 (207)
+|.|.++ +.+|+|.|+|.+.|. .. . ++.+.|.
T Consensus 55 ~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 55 SLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLT 94 (95)
T ss_pred eEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEe
Confidence 5666666 689999999999986 43 2 4445544
No 308
>KOG3515|consensus
Probab=97.78 E-value=0.00024 Score=58.99 Aligned_cols=120 Identities=17% Similarity=0.176 Sum_probs=82.4
Q ss_pred EEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV 114 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~ 114 (207)
+|...+...+.-+.|-|++.+... ....+.+.+..++.............+..+.+.|.......|...+.|..+...
T Consensus 60 ~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~ 139 (741)
T KOG3515|consen 60 TLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRA 139 (741)
T ss_pred ceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEE
Confidence 677878888888899999987522 455667777777765544444555678889999977766555558999988776
Q ss_pred EEecCCCceEEE---Eecc-cceEEEEEEecccCCCeEEEEEeecC
Q psy3475 115 VNYSQRGGISVV---TEKQ-TRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 115 ~~~~~~~~~~~~---~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
............ ..+. ...+.+++......+.|+|+|.+.|.
T Consensus 140 e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 140 ELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR 185 (741)
T ss_pred eecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence 544332111111 0111 23456888888899999999999995
No 309
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.76 E-value=0.00037 Score=43.28 Aligned_cols=65 Identities=31% Similarity=0.414 Sum_probs=42.2
Q ss_pred CeeEEccCCccceeeEEEEeCC----------CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-Cc-eeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTND----------LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PK-ISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~----------~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~-~~~~~~l~ 68 (207)
|+|.++-+.......+..|+++ .||.+.. .+.+|.|..+++.|+|.|.-++.+. |. ....+.+.
T Consensus 30 v~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~----enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs 105 (108)
T PF11465_consen 30 VQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTS----ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS 105 (108)
T ss_dssp EEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEET----TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred EEEEEEcccCCceEEEEEEcCCCcccccccccceEeeec----cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence 5788877665555566777774 4555433 3459999999999999999999874 33 34444444
Q ss_pred E
Q psy3475 69 V 69 (207)
Q Consensus 69 v 69 (207)
|
T Consensus 106 V 106 (108)
T PF11465_consen 106 V 106 (108)
T ss_dssp E
T ss_pred e
Confidence 4
No 310
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.75 E-value=3.1e-05 Score=47.85 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=26.8
Q ss_pred CCCeEEEeecCCCCcEEEEEcccCCCCCe-EEEEEEecC
Q psy3475 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSG-TYECQVSTE 58 (207)
Q Consensus 21 ~~~r~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~ 58 (207)
.+.|+.+..++ .|.|.+++.+|+| .|.|.+.+.
T Consensus 48 ~~~Ri~~~~~G-----nL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 48 QDERVSMGQNG-----NLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred ccccEEECCCc-----eEEEEEEehhhCCCCeEEEEEcc
Confidence 36777765443 8999999999999 799999863
No 311
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.74 E-value=6.6e-05 Score=42.09 Aligned_cols=22 Identities=45% Similarity=0.676 Sum_probs=20.2
Q ss_pred EEEEEcccCCCCCeEEEEEEec
Q psy3475 36 WTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
..|.|.+++.+|+|.|+|.+.+
T Consensus 39 ~~L~i~~~~~~d~G~Y~C~~~n 60 (63)
T smart00408 39 STLTIKSVSLEDSGEYTCVAEN 60 (63)
T ss_pred cEEEEeeCCcccCEEEEEEEec
Confidence 3899999999999999999975
No 312
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.74 E-value=0.0041 Score=48.97 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=77.8
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec--CCcee--eeEEEEEEeccceEecCcceEEecCCcEEEEEEEee
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST--EPKIS--IGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLE 98 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~--~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 98 (207)
.+|.+....+.+.+.|.|.+++.+++|.|+=.+.+ .+... ..+.+.+..+|.+...+ .-++.|+...-.|.+..
T Consensus 276 ~~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~ 353 (566)
T PHA03269 276 EKYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNK 353 (566)
T ss_pred ceEEeccCCCCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC--CccccCCCceEEEEeee
Confidence 55555555566788999999999999999855443 22233 33344444455433332 23568999999999988
Q ss_pred CCCCC-cEEEEEeCCEEEEecCCCc-eEEEEec-ccceEEEEEEecccCC--CeEEEEEeecC
Q psy3475 99 TPDPP-SFIYWYRGANVVNYSQRGG-ISVVTEK-QTRTSRLVISKAVTSD--SGNYTCAPSSS 156 (207)
Q Consensus 99 ~~~~~-~~~~W~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~i~~~~~~d--~g~Y~C~~~n~ 156 (207)
..++. ..+.|+.|+..+....... ...-.++ ....++|.+......| --..+|.+..-
T Consensus 354 YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~ 416 (566)
T PHA03269 354 YYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWI 416 (566)
T ss_pred ecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEc
Confidence 75443 4799999987765321111 1111111 2233455553322222 33679988765
No 313
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.71 E-value=0.00011 Score=45.74 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=43.2
Q ss_pred CcceEEecCCcEEEEEEEeeCC-CCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 79 NSELYIKSGSDINLTCVVLETP-DPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|.......++.++|.|.+.+.. +....+.|.++|.. ..... ......++ ....+.|.+..-.......|+|.|...
T Consensus 11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t-~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~ 88 (99)
T cd04986 11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQT-SAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP 88 (99)
T ss_pred cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEc-CcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence 3333344678899999999976 55568999998764 11000 00000000 112344555433334445899999987
No 314
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=97.69 E-value=0.00012 Score=42.62 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=21.1
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKL 67 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l 67 (207)
.|.|.+++ |+|.|+|.+.|. +....++.|
T Consensus 39 ~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 39 VLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred EEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 68999874 899999999984 444444443
No 315
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.68 E-value=0.00021 Score=42.64 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=20.1
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
+|.|.....+|.+.|+|++.|.
T Consensus 44 ~L~~~~~~~Ddg~~~~C~A~n~ 65 (80)
T cd05885 44 TIRFPVDRKDDGAILSCEASHP 65 (80)
T ss_pred EEEEEeeeccCCcEEEEEEECh
Confidence 7999999999999999999983
No 316
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.66 E-value=0.00012 Score=44.18 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=25.5
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLN 68 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~ 68 (207)
...|.|.+++.+|+|.|+|.+.+... .+..+.|.
T Consensus 47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~ 82 (83)
T cd05753 47 NSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT 82 (83)
T ss_pred CceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence 34799999999999999999987432 34444443
No 317
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.65 E-value=0.00038 Score=43.18 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=42.3
Q ss_pred cCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEE-ec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVT-EK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.++.++|.|.+.+..+..+.+.|.++|.. ............ ++ ....+.|.+..........|+|.+...
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~ 86 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHP 86 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeC
Confidence 45678999999998777779999999987 221110001111 11 112344555443333355899999886
No 318
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.64 E-value=0.00023 Score=42.80 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=23.1
Q ss_pred EEEEcccCCCCCeEEEEEEecCC---ceeeeEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP---KISIGYKLN 68 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~ 68 (207)
.|.|.....+|.|.|+|.+.+.. ....++.|+
T Consensus 47 ~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~ 81 (82)
T cd05759 47 TLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD 81 (82)
T ss_pred EEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence 68888777888999999998732 344555554
No 319
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.62 E-value=0.00042 Score=43.20 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=31.5
Q ss_pred CCeEEEeec--CCCCcEEEEEcccCCCC-CeEEEEEEecC-CceeeeEE
Q psy3475 22 DLRFTSLHS--DGSDEWTLKIASSQLRD-SGTYECQVSTE-PKISIGYK 66 (207)
Q Consensus 22 ~~r~~~~~~--~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~-~~~~~~~~ 66 (207)
++||.+... .+.....|.|.++..+| .|.|.|.|.|. +.....+.
T Consensus 48 ~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~ 96 (98)
T cd05898 48 SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQ 96 (98)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEE
Confidence 467776643 23456789999998867 89999999984 33444443
No 320
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.58 E-value=0.00034 Score=48.19 Aligned_cols=40 Identities=30% Similarity=0.359 Sum_probs=31.2
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecC--C-ceeeeEEEEEEecc
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTE--P-KISIGYKLNVVISK 73 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~--~-~~~~~~~l~v~~~~ 73 (207)
...+|.|.+++.+|+|.|.|.+... + ......-|.|..+.
T Consensus 83 ~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 83 NESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred CcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEchh
Confidence 4568999999999999999999863 3 45666677776543
No 321
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.58 E-value=0.00023 Score=47.51 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=26.7
Q ss_pred EEEEEecccCCCeEEEEEeecC---CCCeEEEEEecCC
Q psy3475 135 RLVISKAVTSDSGNYTCAPSSS---DGASVVVHVLNGK 169 (207)
Q Consensus 135 ~l~i~~~~~~d~g~Y~C~~~n~---~~~~~~~~v~~~~ 169 (207)
.|.|.+++..|+|.|.|.+.+. ....+.|.+..+|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P 39 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPP 39 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCC
Confidence 5889999999999999999886 3344556665433
No 322
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.58 E-value=0.0014 Score=41.68 Aligned_cols=77 Identities=10% Similarity=0.104 Sum_probs=50.0
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCC-cEEEEEeC--CE-E-EEe---------cCCCceEEEEecccceEEEEEEecccC
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPP-SFIYWYRG--AN-V-VNY---------SQRGGISVVTEKQTRTSRLVISKAVTS 144 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~-~~~~W~~~--~~-~-~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~ 144 (207)
+....+..|..++|.|.+++..... ..+.|.+. +. . +.. ....++....+.....-.|.|.+++.+
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN 84 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence 4455667888999999998865444 47889872 31 1 000 112222222233556678999999999
Q ss_pred CCeEEEEEeec
Q psy3475 145 DSGNYTCAPSS 155 (207)
Q Consensus 145 d~g~Y~C~~~n 155 (207)
|++.|.|....
T Consensus 85 DTa~Y~Ca~e~ 95 (115)
T cd05721 85 QTDIYFCKIEL 95 (115)
T ss_pred HCeEEEEEeee
Confidence 99999997644
No 323
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.57 E-value=0.0002 Score=42.68 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=23.2
Q ss_pred EEEEcccCCCCCeEEEEEEecCCceeeeEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLN 68 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~ 68 (207)
.|.|.++ .+|+|.|+|.+.+. ..+..+.|+
T Consensus 48 ~l~i~~~-~~dsG~Y~C~a~~~-~~S~~v~l~ 77 (78)
T cd05752 48 SYRIRAA-NNDSGEYRCQTQGS-SLSDPVHLE 77 (78)
T ss_pred eEEEeec-ccCCEEeEEECCCC-cCCCCEEEe
Confidence 7999999 99999999999763 444444444
No 324
>PHA02633 hypothetical protein; Provisional
Probab=97.55 E-value=0.00033 Score=38.92 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=26.7
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCc-eeeeEEEEEEe
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNVVI 71 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~ 71 (207)
..|.|-++..+|+|.|.|...+... ...++.|.|..
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 3799999999999999999986432 33445555543
No 325
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.52 E-value=0.017 Score=44.70 Aligned_cols=133 Identities=13% Similarity=0.197 Sum_probs=79.7
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC---CceeeeEEEEEEe-ccceEecCcceEEecCCcEEEEEEEe
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE---PKISIGYKLNVVI-SKAKIIGNSELYIKSGSDINLTCVVL 97 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~l~v~~-~~~~~~~~~~~~~~~g~~~~l~C~~~ 97 (207)
+.+|-+..++.-+++.|.|.++..+|+|.|.-...+. ....+...+.+.. ||.+...+. .+..|+...-.|.+.
T Consensus 193 ~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vA 270 (490)
T PHA03271 193 GNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVR 270 (490)
T ss_pred CceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEee
Confidence 4667777777777889999999999999775544431 1233444444443 332322222 246899999999998
Q ss_pred eCCCCC-cEEEEEeCCEEEEecCCCceEE-EEec---ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 98 ETPDPP-SFIYWYRGANVVNYSQRGGISV-VTEK---QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 98 ~~~~~~-~~~~W~~~~~~~~~~~~~~~~~-~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
...++. ..+.|+.+|............. -.++ ....++|.+.......--..+|.+...
T Consensus 271 nYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~ 334 (490)
T PHA03271 271 HFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWK 334 (490)
T ss_pred eecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEc
Confidence 875544 4799999998775433222211 0111 122344544443333334889988765
No 326
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.47 E-value=0.016 Score=45.57 Aligned_cols=120 Identities=19% Similarity=0.238 Sum_probs=73.2
Q ss_pred cEEEEEcccCCCCCeEEEEEEec-CCceeeeEEEEE--EeccceEecCcceEEecCCcEEEEEEEeeCCCCC-cEEEEEe
Q psy3475 35 EWTLKIASSQLRDSGTYECQVST-EPKISIGYKLNV--VISKAKIIGNSELYIKSGSDINLTCVVLETPDPP-SFIYWYR 110 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~l~v--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~~~W~~ 110 (207)
.+.|.|..++.+++|.|+=...+ .+.......+.| ..+|.+...++ -++.|+...-.|.+....++. ..+.|+.
T Consensus 197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~ 274 (486)
T PHA03273 197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYK 274 (486)
T ss_pred ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 46799999999999999744333 223334455555 34454333332 356899999999998875443 4799999
Q ss_pred CCEEEEe-cC-CCceEEEEec-ccceEEEEEEeccc-CCCeEEEEEeecC
Q psy3475 111 GANVVNY-SQ-RGGISVVTEK-QTRTSRLVISKAVT-SDSGNYTCAPSSS 156 (207)
Q Consensus 111 ~~~~~~~-~~-~~~~~~~~~~-~~~~~~l~i~~~~~-~d~g~Y~C~~~n~ 156 (207)
++..+.. .. ......-.++ ....++|.+..... ..--..+|.+...
T Consensus 275 dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~ 324 (486)
T PHA03273 275 NAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWY 324 (486)
T ss_pred CCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEc
Confidence 9998762 21 1111211222 23345666655433 3344889988765
No 327
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.47 E-value=0.00048 Score=42.32 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=19.6
Q ss_pred EEEEcccC-CCCCeEEEEEEecCC
Q psy3475 37 TLKIASSQ-LRDSGTYECQVSTEP 59 (207)
Q Consensus 37 ~L~i~~~~-~~d~G~Y~C~~~~~~ 59 (207)
.|.|.++. .+|+|.|+|.+.|..
T Consensus 59 ~L~i~~~~~~~d~G~Y~C~a~N~~ 82 (91)
T cd04967 59 NLVISNPSKAKDAGRYQCLASNIV 82 (91)
T ss_pred EEEEecCCccCCCEEEEEEEEcCC
Confidence 68998887 599999999999743
No 328
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.39 E-value=0.0013 Score=40.12 Aligned_cols=67 Identities=27% Similarity=0.424 Sum_probs=40.7
Q ss_pred CCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEec--ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 87 GSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEK--QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 87 g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|+.+.+.|.+.+. |.+ .+.|+.++..+...... .....+. ....+.|.+..-...+...++|.+.+.
T Consensus 14 ~~~~~~~C~s~~~~P~~--~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~ 83 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPP--QITWYLDGGPVVASNTT-QSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHP 83 (89)
T ss_dssp TEEEEEEEEEEEEBS-E--EEEEEETTCEECEEEEE-EEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEET
T ss_pred ceEEEEEEEeCCeECCe--EEEEEECCCceeeeeee-eeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECC
Confidence 6799999977665 544 99999988766111000 0000000 112356777665556777999999987
No 329
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.33 E-value=0.0004 Score=39.45 Aligned_cols=25 Identities=44% Similarity=0.663 Sum_probs=21.6
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
....|.|.+++.+|.|.|.|.+.+.
T Consensus 41 ~~~~l~i~~~~~~d~g~y~C~~~~~ 65 (74)
T cd00096 41 GSSTLTISNVTLEDSGTYTCVASNS 65 (74)
T ss_pred eEEEEEECccCcccCcEEEEEEecC
Confidence 3458999999999999999999764
No 330
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.26 E-value=0.00092 Score=38.95 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.5
Q ss_pred cEEEEEcccCCCCCeEEEEEEec
Q psy3475 35 EWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
...|.|.++..+|.|.|+|.|.|
T Consensus 53 ~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 53 NSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeEEEEccCCHHhCcEEEEEEEC
Confidence 34899999999999999999875
No 331
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.22 E-value=0.00058 Score=38.63 Aligned_cols=52 Identities=25% Similarity=0.465 Sum_probs=34.7
Q ss_pred ecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 85 ~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
..|..|+|.|+.... .+.|.+++..+..+ ...+.+.+-. ++.|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~~-----~i~W~~n~~~~~g~--------------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD-----DIKWKKNDQVSQGS--------------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC-----CceEEeCCccCCCC--------------CceEEeeccC-CCCceEEEEeCCC
Confidence 368999999965422 48999988554332 1233333444 8899999998764
No 332
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.11 E-value=0.0025 Score=36.36 Aligned_cols=50 Identities=20% Similarity=0.390 Sum_probs=35.4
Q ss_pred cCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeec
Q psy3475 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n 155 (207)
..+.|.|.|... ..|.|++ |..+... ....|.+.....+..|.|.|.+++
T Consensus 5 ~~~~V~L~C~~~------tsi~W~k-G~~~~~~-------------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNGA------TNITWKK-GKEILEV-------------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecCC------CcEEEec-Ccccccc-------------cccEEeccCcccCCCcceEecCcc
Confidence 346789999551 2699999 4443321 124677778888899999999988
No 333
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.04 E-value=0.07 Score=41.73 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=71.5
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-Ccee--eeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCC-cEEEEEe
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKIS--IGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPP-SFIYWYR 110 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~--~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~~~W~~ 110 (207)
...|.|..++.+.+|.|+=...+. .... ..+.+...-+|.+...++ -++.|+...-.|.+....++. ..+.|+.
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 345999999999999999886652 2222 333444444454333332 356899999999998875444 4799999
Q ss_pred CCEEEEecCC--CceEEEEecccceEEEEEEecccCCC-eEEEEEeecC
Q psy3475 111 GANVVNYSQR--GGISVVTEKQTRTSRLVISKAVTSDS-GNYTCAPSSS 156 (207)
Q Consensus 111 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~-g~Y~C~~~n~ 156 (207)
|+..+..... .......++....++|.+........ -+.+|.+...
T Consensus 259 ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~ 307 (466)
T PHA03270 259 GGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWH 307 (466)
T ss_pred CCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEc
Confidence 9987743211 11122222222345555544333222 3888987665
No 334
>PHA02633 hypothetical protein; Provisional
Probab=96.97 E-value=0.0019 Score=35.99 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=28.1
Q ss_pred ceEEEEEEecccCCCeEEEEEeecC---CCCeEEEEEecC
Q psy3475 132 RTSRLVISKAVTSDSGNYTCAPSSS---DGASVVVHVLNG 168 (207)
Q Consensus 132 ~~~~l~i~~~~~~d~g~Y~C~~~n~---~~~~~~~~v~~~ 168 (207)
....|.|-++..+|+|.|.|.+.|. ...++.+.|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 3467889999999999999999987 344555555543
No 335
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=96.94 E-value=0.0061 Score=36.61 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=15.0
Q ss_pred EEEEcccCCCCCeEEEEEEec
Q psy3475 37 TLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
.|.+.....+|.+.|+|.+.+
T Consensus 46 ~l~~~~~~~d~g~~~~C~v~h 66 (82)
T cd05761 46 SLRFQVDREDDGAPIICRVDH 66 (82)
T ss_pred EEEEEcchhhCCCEEEEEEeC
Confidence 566655455566789999987
No 336
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.88 E-value=0.0086 Score=35.93 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=24.1
Q ss_pred EEEEcccCCCCCeEEEEEEecC--CceeeeEEEEEEe
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE--PKISIGYKLNVVI 71 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~ 71 (207)
+|.|..-..+|...|+|++.|. ........|.|+.
T Consensus 45 ~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 45 QLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 6888666667777899999873 2355666666653
No 337
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.79 E-value=0.0024 Score=39.22 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.6
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
....|.|.+++.+|+|.|+|++.+.
T Consensus 51 ~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 51 NKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred eeEEEEccCCChhHCEEEEEEEECC
Confidence 3457999999999999999999763
No 338
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=96.78 E-value=0.0038 Score=38.62 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.9
Q ss_pred EEEEEcccCCCCCeEEEEEEe
Q psy3475 36 WTLKIASSQLRDSGTYECQVS 56 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~ 56 (207)
..+.|.+++.+|+|.|.|...
T Consensus 55 a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 55 ASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEEEecCCCcccCEEEEEEEE
Confidence 368999999999999999975
No 339
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=96.75 E-value=0.013 Score=35.30 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=16.5
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|.|......|...|+|.+.+.
T Consensus 47 ~l~~~~~~~d~g~~~tC~v~h~ 68 (83)
T cd07705 47 SVEFQVTREDDGAEITCSVGHE 68 (83)
T ss_pred EEEEEecchhCCCEEEEEEECc
Confidence 5666555666778899999873
No 340
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.74 E-value=0.015 Score=36.06 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=42.2
Q ss_pred EecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCe-EEEEEeecC
Q psy3475 84 IKSGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSG-NYTCAPSSS 156 (207)
Q Consensus 84 ~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~n~ 156 (207)
...|..+++.|.+.+. |.....+.|+++...+....................+.+... .+|.| +|+|.|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 3679999999999875 332337899887766543321100000000123356666664 55555 999998764
No 341
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.73 E-value=0.11 Score=40.28 Aligned_cols=75 Identities=15% Similarity=0.275 Sum_probs=47.0
Q ss_pred eEEecCCcEEEEEEEeeCC-CCCcEEEEEeCCEEEE-------------e--cCCCceEEEEec----ccceEEEEEEec
Q psy3475 82 LYIKSGSDINLTCVVLETP-DPPSFIYWYRGANVVN-------------Y--SQRGGISVVTEK----QTRTSRLVISKA 141 (207)
Q Consensus 82 ~~~~~g~~~~l~C~~~~~~-~~~~~~~W~~~~~~~~-------------~--~~~~~~~~~~~~----~~~~~~l~i~~~ 141 (207)
..+..|..+.|.|..+-.. .....+.|+..|-.+. . .....+.+.... ....++|+|..+
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 4455699999999887643 2334789986432211 0 000011111110 335689999999
Q ss_pred ccCCCeEEEEEeecC
Q psy3475 142 VTSDSGNYTCAPSSS 156 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~ 156 (207)
.-+..|-|+|.+...
T Consensus 354 ~I~N~GCY~~~a~~g 368 (500)
T PHA02914 354 HINNAGCYEAQAFMG 368 (500)
T ss_pred EEEcCCceEEEEecC
Confidence 999999999999876
No 342
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=96.69 E-value=0.024 Score=35.43 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=27.2
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
+.|.+..+..+|+|.|+|.+.|. ...+.++.|.|
T Consensus 65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v 99 (101)
T cd05860 65 SELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYV 99 (101)
T ss_pred EEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEE
Confidence 47999999999999999999984 34566666655
No 343
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=96.52 E-value=0.0038 Score=38.48 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=18.2
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|.+......|.|.|+|.+.+.
T Consensus 63 ~l~v~~~~~~~~~~y~C~v~h~ 84 (95)
T cd00098 63 QLTVSPSDWNSGDTYTCVVTHE 84 (95)
T ss_pred EEEECHHHhCCCCCEEEEEEeC
Confidence 6777777778999999999874
No 344
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=96.51 E-value=0.025 Score=33.21 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=23.8
Q ss_pred EEEcccCCCCCeEEEEEEecCCc--eeeeEEEEE
Q psy3475 38 LKIASSQLRDSGTYECQVSTEPK--ISIGYKLNV 69 (207)
Q Consensus 38 L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v 69 (207)
|.|.+++.+|+|.|+|.+.+... .+..+.|+|
T Consensus 47 ~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 47 LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 77889999999999999987433 344445443
No 345
>KOG3515|consensus
Probab=96.45 E-value=0.0055 Score=51.28 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=51.4
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+..+..|+.|.|.|.+.+.|++. .+.|++.++.... +... ....+|.......+..+.|.|++.|..+.
T Consensus 16 ~~~~~~g~~v~l~C~v~~~pp~~-~~eW~h~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~c~a~ns~~~ 84 (741)
T KOG3515|consen 16 TVGLRLGEDVPLPCRVNSNPPEI-DVEWYHSTSGEHG----RYAT-----IADPTLVTTGDVRDTVAELNCRAFNSVGM 84 (741)
T ss_pred ChhhccCCcceeeeecCCCCCCc-ceEEEecCccccc----cccc-----ccCCceeeecchhhhhhhhhhhhcccccC
Confidence 33678999999999999986544 8999998776651 1111 13457888888888888999999998333
No 346
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.27 E-value=0.04 Score=34.12 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=36.1
Q ss_pred cEEEEEEEeeCCCCCcEEEEEeCCEEEE-----ecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 89 DINLTCVVLETPDPPSFIYWYRGANVVN-----YSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 89 ~~~l~C~~~~~~~~~~~~~W~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
...+.|.+.+. .|...|.|+++..... ....+.+ ...+.|.+.....+|...|+|++.+.
T Consensus 17 ~~va~C~s~~g-kPaa~IsW~~~~~g~~~~~~~~~~~gt~-------tv~S~l~~~P~~~d~Gk~ltC~v~h~ 81 (95)
T cd07703 17 VPVAKCVSANG-RPPARISWSSTLGGNANTTSKENGDGTV-------TVTSEYSLVPTPEANGKEVTCKVEHE 81 (95)
T ss_pred cEEEEEEcCCC-CCCcEEEEEcCCCCCeeEEEEeCCCCCE-------EEEEEEEEecCHHHCCCEEEEEEeCc
Confidence 46789988765 3333999998621110 0111111 12356777665666666999999997
No 347
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.19 E-value=0.05 Score=33.71 Aligned_cols=60 Identities=22% Similarity=0.286 Sum_probs=35.6
Q ss_pred CcEEEEEEEeeC-CCCCcEEEEEeC--CEEE-Ee--cCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 88 SDINLTCVVLET-PDPPSFIYWYRG--ANVV-NY--SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 88 ~~~~l~C~~~~~-~~~~~~~~W~~~--~~~~-~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
....+.|.+.+. |.+ .|.|+++ +... .. ...+. ....+.|.+.....+|...|+|.+.+.
T Consensus 16 ~~~va~C~s~~gkP~a--~ItW~~~~~~~~~~~~~~~~~g~-------~tv~S~l~~~p~~~d~G~~~tC~v~h~ 81 (95)
T cd05719 16 PVTVATCVSANGKPPA--TISWETTLGGEAETQSKENPNGT-------VTVTSEYRLVPSREANGKELTCVVSHP 81 (95)
T ss_pred ccEEEEEECCCCcCCC--EEEEEeCCCCcceeEeecCCCCC-------EEEEEEEEEecCHHHCCCEEEEEEeCc
Confidence 456789998654 444 9999986 2110 00 00100 112356666555555666999999997
No 348
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=96.11 E-value=0.034 Score=33.33 Aligned_cols=23 Identities=9% Similarity=0.369 Sum_probs=18.4
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCc
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPK 60 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~ 60 (207)
..|.|.++ .|+|.|.|.|.|..+
T Consensus 49 s~L~i~~~--~d~g~Y~C~A~N~~G 71 (81)
T cd05749 49 SVLNVPGL--NETSKFSCEAHNAKG 71 (81)
T ss_pred CEEEEccc--cCCeEEEEEEEeccC
Confidence 37888877 588999999998533
No 349
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=95.79 E-value=0.064 Score=31.48 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=21.2
Q ss_pred CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 21 ~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.++.|+... .|.|......+...|+|.+.+.
T Consensus 40 ~~gt~~~~s-------~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 40 SDGTYFLSS-------YLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CCCCEEEEE-------EEEEccccCCCCCEEEEEEEEc
Confidence 355666442 6777666667777899999763
No 350
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.63 E-value=0.026 Score=36.93 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=37.1
Q ss_pred cCCcEEEEEEEeeC---CCCCcEEEEEeCCEEEEecCCC-c---------eEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 86 SGSDINLTCVVLET---PDPPSFIYWYRGANVVNYSQRG-G---------ISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 86 ~g~~~~l~C~~~~~---~~~~~~~~W~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
-++.+.|.|.+... ..+...+.|..++..+-.-... . ... .+-.....+|.+.....- .|+|+|.
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccceEEE
Confidence 46888999988652 1223479999888765332111 1 111 111334556777764444 8999999
Q ss_pred eecC
Q psy3475 153 PSSS 156 (207)
Q Consensus 153 ~~n~ 156 (207)
+...
T Consensus 104 Vt~~ 107 (130)
T PF08204_consen 104 VTEL 107 (130)
T ss_dssp EEET
T ss_pred EEec
Confidence 9876
No 351
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=95.55 E-value=0.067 Score=32.19 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=15.1
Q ss_pred EEEEcccCCCCCeEEEEEEec
Q psy3475 37 TLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
.|.+..-...|...|+|++.+
T Consensus 47 ~L~~~~~~~d~g~~ytC~v~h 67 (83)
T cd05884 47 TLDFRVDRSDDGVAIICRVDH 67 (83)
T ss_pred EEEEEcccccCCCEEEEEEec
Confidence 677754445566689999987
No 352
>PHA02982 hypothetical protein; Provisional
Probab=95.18 E-value=0.059 Score=37.96 Aligned_cols=73 Identities=14% Similarity=0.330 Sum_probs=46.5
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC-EEEEec----------------CCCceEEEEecccceEEEEEEeccc
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGA-NVVNYS----------------QRGGISVVTEKQTRTSRLVISKAVT 143 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~-~~~~~~----------------~~~~~~~~~~~~~~~~~l~i~~~~~ 143 (207)
++....++.+.|.|.......- ....|..+. ..+... .+....... ....++|+|..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i-~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv--~g~~STLTIkk~~i 109 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEI-SRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSV--SGNSSTFTMKKPDP 109 (251)
T ss_pred hhhccCCCcEEEEecCCCcchh-hhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEE--eccceeEEeccCCc
Confidence 3445678999999996554322 256887643 222210 011111112 34678999999999
Q ss_pred CCCeEEEEEeecC
Q psy3475 144 SDSGNYTCAPSSS 156 (207)
Q Consensus 144 ~d~g~Y~C~~~n~ 156 (207)
+..|-|+|.+...
T Consensus 110 ~N~GCYtc~~ks~ 122 (251)
T PHA02982 110 QNLGCFTCEAKDA 122 (251)
T ss_pred ccCCceEEEEecC
Confidence 9999999999875
No 353
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.07 E-value=0.12 Score=32.09 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=41.0
Q ss_pred ceEEecCCcEEE-EEEEeeCCCCCcEEEEEeCCEEEE-----ecCCCceEEEEecccceEEEEEEecccCCCeEEEEEee
Q psy3475 81 ELYIKSGSDINL-TCVVLETPDPPSFIYWYRGANVVN-----YSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 81 ~~~~~~g~~~~l-~C~~~~~~~~~~~~~W~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
...+..|+.+.+ .|.+.+. .|...|.|+.+..... ....+.+ .-.+.+.+......|.-.++|.+.
T Consensus 10 ~~~~~~g~~~~vA~C~sa~g-kPaa~IsW~~~~~G~~~~~~~~~~ngT~-------TV~S~~~l~p~r~d~G~~vtC~V~ 81 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEG-RPAADVTWETNVYGTSESHSQEHPNGTT-------TVTSEYIWVPSRHANGHPLTCVVS 81 (97)
T ss_pred eeEeecCcceeEEEEEccCC-ccCCEeEEeCCCCCccceeeecCCCCCE-------EEEEEEEEEeCHHHCCcEEEEEEe
Confidence 345567888877 8877665 3334999997532211 1111111 123566665556666679999998
Q ss_pred cC
Q psy3475 155 SS 156 (207)
Q Consensus 155 n~ 156 (207)
..
T Consensus 82 H~ 83 (97)
T cd07704 82 HP 83 (97)
T ss_pred Cc
Confidence 87
No 354
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=94.59 E-value=0.27 Score=30.46 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=15.5
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|.+.....+|...|+|++.+.
T Consensus 60 ~l~~~P~~~d~Gk~ltC~v~h~ 81 (95)
T cd07703 60 EYSLVPTPEANGKEVTCKVEHE 81 (95)
T ss_pred EEEEecCHHHCCCEEEEEEeCc
Confidence 5666555555566799999873
No 355
>PHA03042 CD47-like protein; Provisional
Probab=94.41 E-value=0.23 Score=36.59 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=39.3
Q ss_pred cCCcEEEEEEEeeCC---CCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 86 SGSDINLTCVVLETP---DPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~---~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
-.+++.+.|....-- -...++.|..++..+-..+.. ..++|.+. -...-.|+|+|.|.+.
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t----------n~aSL~~~-f~~~l~GNYTCEv~~l 92 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT----------NTSSLKFN-FSKNLSGNYTCEAINK 92 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC----------cceEEEEe-ccccCCCceeEEEeec
Confidence 467889999886631 123379999988876543331 22455553 3344589999999886
No 356
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=94.29 E-value=0.35 Score=29.92 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=14.8
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|.+......|.-.|+|.+.+.
T Consensus 60 ~l~~~p~~~d~G~~~tC~v~h~ 81 (95)
T cd05719 60 EYRLVPSREANGKELTCVVSHP 81 (95)
T ss_pred EEEEecCHHHCCCEEEEEEeCc
Confidence 5666544455555799999873
No 357
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=94.15 E-value=0.28 Score=30.09 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=13.6
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|.+ ...|.+.|+|.+.+.
T Consensus 64 ~l~v---~~~~~~~ytC~V~H~ 82 (93)
T cd07698 64 TLEV---PPEDKARYSCRVEHS 82 (93)
T ss_pred EEEE---CCCCCCEEEEEEEeC
Confidence 4545 345788999999874
No 358
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=93.35 E-value=0.16 Score=37.25 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
++++++...+ .|.+.+.+++++|.|+|....
T Consensus 28 n~~~nIT~TG-----~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 28 NSYVNITETG-----KLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred CCeEEEccCc-----eEEeeccccccCCceEEEEEE
Confidence 4556655444 799999999999999999874
No 359
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=93.02 E-value=0.24 Score=30.90 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=20.0
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
++.|++.. .|.+..-...+...|+|.+.+.
T Consensus 59 dgty~~~s-------~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 59 DNTYSLSS-------YLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred CCCEEEEE-------EEEEcHHHhCCCCeEEEEEEec
Confidence 56666542 5667555555567899999864
No 360
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=92.95 E-value=0.35 Score=28.87 Aligned_cols=48 Identities=17% Similarity=0.396 Sum_probs=27.3
Q ss_pred CeeEEccCCcc--ceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHI--LTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~--~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.|++.+.... ..........++.|++.. .|.+. ..+...|+|.+.+.
T Consensus 27 v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s-------~l~v~---~~~~~~ysC~V~H~ 76 (83)
T PF07654_consen 27 VTWLKNGKEVTEGVETTPPPPNSDGTYSVTS-------SLTVT---WNSGDEYSCRVTHE 76 (83)
T ss_dssp EEEEETTEEETTTEEEEEEEEETTSEEEEEE-------EEEEE---TTTTGGEEEEEEET
T ss_pred EEEEeccceeeeeeeecccccccccceeeeE-------EEEec---CCCCCEEEEEEEEC
Confidence 57988543211 111112224577787653 56665 45555799999864
No 361
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=92.93 E-value=0.13 Score=37.71 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=32.6
Q ss_pred EEEEEe-CCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 105 FIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 105 ~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.+.|.. +|..+..... +.++ ....|.+.+...+++|.|+|.....
T Consensus 14 ~y~W~GP~g~~l~gn~~--~nIT-----~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 14 TYLWTGPNGKPLSGNSY--VNIT-----ETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred ceEEECCCCcccCCCCe--EEEc-----cCceEEeeccccccCCceEEEEEEE
Confidence 678986 5666654433 2322 3457999999999999999998765
No 362
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=92.89 E-value=0.32 Score=30.00 Aligned_cols=31 Identities=19% Similarity=0.519 Sum_probs=19.7
Q ss_pred CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 21 ~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
+++.|++.. .|.+..-...+...|+|.+.+.
T Consensus 55 ~~~Ty~~~S-------~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 55 EGSTFSTTS-------ELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred CCCcEEEEE-------EEEEchHHhcCCCeEEEEEEEC
Confidence 455566442 5666544445667899999874
No 363
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=92.65 E-value=0.52 Score=28.57 Aligned_cols=24 Identities=42% Similarity=0.635 Sum_probs=21.2
Q ss_pred CcEEEEEcccCCCCCeEEEEEEec
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+..+|.+..++..|+|..+|.+..
T Consensus 49 ~~ktL~~~qv~~qdSG~WtC~V~~ 72 (88)
T cd07694 49 DKKTLNLVQLGPNDSGTWDCIVSV 72 (88)
T ss_pred CccEEEeceeCcccCCEEEEEEEE
Confidence 455899999999999999999964
No 364
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=92.25 E-value=0.28 Score=30.38 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=13.8
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|.+..-...+...|.|.+.+.
T Consensus 64 ~l~v~~~~w~~g~~ysC~V~H~ 85 (96)
T cd07696 64 TLNVSTDDWISGDTFQCKVTHP 85 (96)
T ss_pred EEEeCHHHccCCCcEEEEEECC
Confidence 5556543333445699999874
No 365
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=92.19 E-value=0.94 Score=28.93 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=13.7
Q ss_pred EEEEcccCCCCCe-EEEEEEecC
Q psy3475 37 TLKIASSQLRDSG-TYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G-~Y~C~~~~~ 58 (207)
.|.+.. ...|.| .|+|.+.+.
T Consensus 70 ~L~~~~-~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 70 TVQVKL-TEDDVHSQVTCEVQHR 91 (111)
T ss_pred EEEEEC-ccccccCceEEEEEeC
Confidence 455643 455555 499999874
No 366
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=92.15 E-value=0.91 Score=27.70 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=41.1
Q ss_pred cCcceEEecCCcEEEEEEEeeCCC---CCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEee
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPD---PPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~---~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
.++...+..|++++..|.+..... ....+.|..++..++.+. +.... ...+.+++.+......-.|-|...
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~q---y~~in---~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQ---YRVIN---DTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGC---EEEES---TTEEEEEESS--SSEEEEEEEEEC
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhH---cceeC---CeEEEEEEccCCCCCceEEEEEEc
Confidence 345556788999999999976533 445899998887655432 22222 233566666555544456666533
No 367
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=91.57 E-value=0.99 Score=34.70 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.9
Q ss_pred cEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 89 DINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 89 ~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
.++|.|.+.+..+..+.+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999999888889999998
No 368
>PHA03240 envelope glycoprotein M; Provisional
Probab=90.74 E-value=0.47 Score=33.57 Aligned_cols=19 Identities=42% Similarity=0.448 Sum_probs=16.1
Q ss_pred cEEEEEcccCCCCCeEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYEC 53 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C 53 (207)
+.+|.|.++..+|.|+|.-
T Consensus 104 NstL~i~~vn~sd~~nYcr 122 (258)
T PHA03240 104 NSTLIIAHLNLSDAGEYCR 122 (258)
T ss_pred cceEEEEEEeecCcchhhh
Confidence 4489999999999999843
No 369
>PHA03269 envelope glycoprotein C; Provisional
Probab=90.66 E-value=6.9 Score=31.72 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=32.8
Q ss_pred EEEEcccCCCC--CeEEEEEEecC-Cc-----eeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEE
Q psy3475 37 TLKIASSQLRD--SGTYECQVSTE-PK-----ISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYW 108 (207)
Q Consensus 37 ~L~i~~~~~~d--~G~Y~C~~~~~-~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W 108 (207)
+|++.+....| .-..+|.+.-. .. .+....-.|..+|.+. +....| ...|.+.--|.....+.|
T Consensus 393 TLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtIS-----m~FedG---~AVCtA~CVP~~~V~l~W 464 (566)
T PHA03269 393 ALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVS-----IEIIDG---HIVCLAKCVPRGVVHFNW 464 (566)
T ss_pred EEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEE-----EEEeCC---EEEEecccccCCCceEEE
Confidence 56654332222 34569998742 11 1222233343434332 223334 344555444443337899
Q ss_pred EeCCEE
Q psy3475 109 YRGANV 114 (207)
Q Consensus 109 ~~~~~~ 114 (207)
..++..
T Consensus 465 lVgD~p 470 (566)
T PHA03269 465 WINDIP 470 (566)
T ss_pred EecCCC
Confidence 875544
No 370
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=90.27 E-value=1.4 Score=28.96 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=21.5
Q ss_pred CCcEEEEEcccCCCCCeEEEEEEecCCc-eeeeEEEEE
Q psy3475 33 SDEWTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNV 69 (207)
Q Consensus 33 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v 69 (207)
.++++|.|...+.- .|+|+|++..... ....+.|..
T Consensus 83 kG~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 83 KGNASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY 119 (130)
T ss_dssp GTB--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence 45677999886666 9999999976322 334444443
No 371
>KOG1480|consensus
Probab=90.06 E-value=0.11 Score=43.65 Aligned_cols=70 Identities=27% Similarity=0.479 Sum_probs=49.3
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.-..+..+..+++.|...-. .+...+.|++++..+..... +.. .....+.+.++...|.|+|+|.+.|-
T Consensus 136 p~~q~V~~~s~~~l~cr~pe~-~paae~~w~k~e~~~~pd~n--~~~-----~~d~~li~~~arlsd~~nytc~a~ni 205 (909)
T KOG1480|consen 136 PVGQEVQEETTLQLPCRPPEG-DPKAEVEWLKNEVVIDPDAN--VIR-----ASDHNLIISQARLSDSGNYTCEATNI 205 (909)
T ss_pred hhhheecccccccccccCccc-chhhhhhccccCCCCCcccc--chh-----hhcCCccccchhhhhcccceeeeehh
Confidence 444556677778888876443 23337899999888776322 221 13457889999999999999999987
No 372
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=89.96 E-value=0.86 Score=28.50 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=14.8
Q ss_pred EEEEEcccCCCCCeEEEEEEec
Q psy3475 36 WTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
.+|.+..-..+|...|+|++..
T Consensus 62 stlt~~~~r~D~g~~~sC~A~l 83 (100)
T cd05755 62 ATITITVDREDHGANFSCETEL 83 (100)
T ss_pred EEEEEecchhhCCcEEEEEEEe
Confidence 3677754444555589999985
No 373
>PHA03052 Hypothetical protein; Provisional
Probab=89.75 E-value=2.5 Score=24.15 Aligned_cols=41 Identities=17% Similarity=0.379 Sum_probs=30.5
Q ss_pred CcceEEecCCcEEEEEEEeeCC-CCCcEEEEEeCCEEEEecC
Q psy3475 79 NSELYIKSGSDINLTCVVLETP-DPPSFIYWYRGANVVNYSQ 119 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~-~~~~~~~W~~~~~~~~~~~ 119 (207)
|....+..|.+++|.|++.-.+ .....+.|..++..+.+..
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d 45 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDD 45 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccc
Confidence 3556677899999999996653 3344789999999885543
No 374
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=89.54 E-value=2.1 Score=26.36 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=12.8
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|.+. ..+...|+|.+.+.
T Consensus 64 ~L~~~---~~~~~~ysC~V~H~ 82 (94)
T cd05766 64 MLETT---PSRGDTYTCVVEHS 82 (94)
T ss_pred EEEEc---CCCCCEEEEEEEeC
Confidence 45443 34566899999874
No 375
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=89.36 E-value=1 Score=27.80 Aligned_cols=31 Identities=16% Similarity=0.366 Sum_probs=18.4
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 59 (207)
++.|.... .|.+..........|+|.+.+.+
T Consensus 57 dgty~~~s-------~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 57 GGLYTASS-------QLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCEEEEE-------EEEEeHHHcCCCCcEEEEEEeCC
Confidence 56666442 56665433333456999998753
No 376
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=89.13 E-value=2.6 Score=26.01 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=17.8
Q ss_pred CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 21 ~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|+.|++.. .|.+. +++...|+|.+.+.
T Consensus 56 ~Dgty~~~s-------~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 56 QDLSFQKFS-------YLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCcEEEEE-------EEEEE---CCCCCeEEEEEEeC
Confidence 356666542 56554 34566899999864
No 377
>KOG1480|consensus
Probab=89.10 E-value=0.22 Score=41.95 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=20.3
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|+|..+.+.|+|+|+|++.+.
T Consensus 184 ~li~~~arlsd~~nytc~a~ni 205 (909)
T KOG1480|consen 184 NLIISQARLSDSGNYTCEATNI 205 (909)
T ss_pred Cccccchhhhhcccceeeeehh
Confidence 6999999999999999999873
No 378
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=88.94 E-value=2.8 Score=25.76 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=11.6
Q ss_pred CCCCCeEEEEEEecC
Q psy3475 44 QLRDSGTYECQVSTE 58 (207)
Q Consensus 44 ~~~d~G~Y~C~~~~~ 58 (207)
.+.+...|.|.+.+.
T Consensus 68 ~~~~~~~ysC~V~H~ 82 (93)
T cd05770 68 TPTKGDEYACRVRHN 82 (93)
T ss_pred CCCCCCeEEEEEEEC
Confidence 456777899999863
No 379
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=88.68 E-value=1.8 Score=27.84 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=15.7
Q ss_pred EEEEcccCCCC-CeEEEEEEecCC
Q psy3475 37 TLKIASSQLRD-SGTYECQVSTEP 59 (207)
Q Consensus 37 ~L~i~~~~~~d-~G~Y~C~~~~~~ 59 (207)
.|.|......| ...|+|.+.+.+
T Consensus 69 ~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 69 RLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred EEEEChHHhccCCCeEEEEEEEeC
Confidence 67776555444 457999998753
No 380
>PHA03042 CD47-like protein; Provisional
Probab=88.48 E-value=3.1 Score=30.93 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=26.1
Q ss_pred EEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 17 ~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
..|+.+++.....|+. +..+|.+.. ..+-.|+|+|++.+
T Consensus 53 V~Wkf~~~~If~~n~t-n~aSL~~~f-~~~l~GNYTCEv~~ 91 (286)
T PHA03042 53 INWKFNNKVIFKKNNT-NTSSLKFNF-SKNLSGNYTCEAIN 91 (286)
T ss_pred EEEEeCCeeEEEecCC-cceEEEEec-cccCCCceeEEEee
Confidence 3455566665555555 556787744 45558999999986
No 381
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=87.46 E-value=1.5 Score=27.36 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=25.7
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeE-EEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGT-YECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~-Y~C~~~~~ 58 (207)
|+|.+.+.... .........++.|++.. .|.+. .+...+|. |+|.+.+.
T Consensus 39 V~W~~~g~~~~-~~t~~~~~~dgTys~~S-------~L~v~-~~~W~~g~~ytC~V~H~ 88 (99)
T cd04986 39 FTWTPSGGKEA-VQTSAESDQCGCYSVSS-------VLPGC-AEEWNKGEPFACTVTHP 88 (99)
T ss_pred EEEEECCccCc-EEcCcccCCCCCEEEEE-------EEEeC-HHHhcCCCeEEEEEECC
Confidence 57988653211 11111122355666543 56665 34455554 99999863
No 382
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=86.46 E-value=5.1 Score=24.81 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=12.1
Q ss_pred EEEEcccCCCCCeEEEEEEecCC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP 59 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~ 59 (207)
.|.|..-. ....|+|.+.+.+
T Consensus 65 ~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 65 WLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred EEEECchh--CCCeEEEEEEECC
Confidence 45554322 2334999998743
No 383
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=85.95 E-value=1.4 Score=27.67 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=14.0
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|.|..-...+...|+|.+.+.
T Consensus 69 ~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 69 KLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred EEEEcHHHhcCCCcEEEEeEeC
Confidence 5666433334555799999874
No 384
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=85.59 E-value=11 Score=27.05 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=35.6
Q ss_pred EEEEE-cccCCCCCeEEEEEEecC-C-ceee----eEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEE
Q psy3475 36 WTLKI-ASSQLRDSGTYECQVSTE-P-KISI----GYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYW 108 (207)
Q Consensus 36 ~~L~i-~~~~~~d~G~Y~C~~~~~-~-~~~~----~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W 108 (207)
++|.+ .+...+-.-..+|.+.-. . .... ...-.|..+|.+. +....| ...|.+.--|.....+.|
T Consensus 39 Stl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs-----v~F~~g---~AVC~A~CVP~~~v~l~W 110 (211)
T PF02124_consen 39 STLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS-----VRFEDG---YAVCTARCVPRGNVTLRW 110 (211)
T ss_pred EEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE-----EEecCC---EEEEEcceeeCCCeEEEE
Confidence 36777 333344455789998742 2 1111 1222233333222 222223 456666555544458999
Q ss_pred EeCCEEE
Q psy3475 109 YRGANVV 115 (207)
Q Consensus 109 ~~~~~~~ 115 (207)
..++...
T Consensus 111 ~v~d~~~ 117 (211)
T PF02124_consen 111 SVGDDPS 117 (211)
T ss_pred EECCccC
Confidence 9776543
No 385
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=84.88 E-value=5.3 Score=23.89 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=15.1
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.|.+..-...+...++|.+.+.
T Consensus 62 ~l~~~~~~~~~~~~~~C~~~~~ 83 (89)
T PF08205_consen 62 TLTLTPTREDHGKTLTCRASHP 83 (89)
T ss_dssp EEEEETTGGGTTEEEEEEEEET
T ss_pred EEEEEcChHHCCeEEEEEEECC
Confidence 5677554445666799999863
No 386
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=83.69 E-value=7.3 Score=24.21 Aligned_cols=49 Identities=14% Similarity=0.040 Sum_probs=27.6
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|+|++...+.. .. ......++.+.+.. .|.+......|.-.++|.+.+.
T Consensus 35 IsW~~~~~G~~-~~-~~~~~~ngT~TV~S-------~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 35 VTWETNVYGTS-ES-HSQEHPNGTTTVTS-------EYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred eEEeCCCCCcc-ce-eeecCCCCCEEEEE-------EEEEEeCHHHCCcEEEEEEeCc
Confidence 67987543321 11 11222355666553 5666555555666799999863
No 387
>KOG4597|consensus
Probab=81.98 E-value=3.3 Score=33.32 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=49.4
Q ss_pred cceEEecCCcEEEEEEEeeCCCCCcEEEEEe---CCEEEEec---CCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR---GANVVNYS---QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~---~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
....+.+++...+.|-..|.+.+ .|+|-+ ++..+... ...+.. ....-.|.|-+....|.|.|+|.+
T Consensus 204 a~w~vg~wetcS~tCg~~G~q~r--~V~c~qv~anr~~vv~~~nq~~e~p~-----vtstcql~ic~ewq~~a~w~tCs~ 276 (560)
T KOG4597|consen 204 AEWFVGDWETCSSTCGVQGRQYR--VVTCEQVFANRENVVMRPNQTVENPV-----VTSTCQLVICNEWQADAGWYTCSA 276 (560)
T ss_pred chhhcccchhhcccccccCCcCc--eeeeehhhccccceeecCccccCCcc-----eeeeeeEEEcchhhcCCCceeecc
Confidence 34556678899999999998777 889965 33332211 112222 224457899999999999999999
Q ss_pred ecC
Q psy3475 154 SSS 156 (207)
Q Consensus 154 ~n~ 156 (207)
.+.
T Consensus 277 rcg 279 (560)
T KOG4597|consen 277 RCG 279 (560)
T ss_pred ccc
Confidence 998
No 388
>PHA02982 hypothetical protein; Provisional
Probab=81.37 E-value=17 Score=26.07 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=41.1
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEeccceEecCcceEEecCC-cEEEEEEEeeCCCCCcEEEEEe
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISKAKIIGNSELYIKSGS-DINLTCVVLETPDPPSFIYWYR 110 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~~~~~~~~~~W~~ 110 (207)
+.++|+|.++..+..|-|+|.+..... .....=|.|+..... .....+. .-.+.|-+-+...+ -..|..
T Consensus 98 ~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~------~~W~e~nNeT~V~CyVgS~~~d--vp~W~V 169 (251)
T PHA02982 98 NSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDIL------YVVEEHNNETIITCFVGSKHGD--VPRFIV 169 (251)
T ss_pred cceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceEE------EEEEecCCeEEEEEEEEeccCC--CccEEE
Confidence 456999999999999999999986322 122223333211110 0011222 33567877554333 227877
Q ss_pred CCEE
Q psy3475 111 GANV 114 (207)
Q Consensus 111 ~~~~ 114 (207)
+|..
T Consensus 170 ~GVv 173 (251)
T PHA02982 170 AGIV 173 (251)
T ss_pred eeEE
Confidence 6653
No 389
>PHA03282 envelope glycoprotein E; Provisional
Probab=77.31 E-value=6.4 Score=31.72 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=23.1
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCCce
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEPKI 61 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 61 (207)
++..|+|.|+..+++|.|.|.+..++..
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~yNGHV 358 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYVNGHV 358 (540)
T ss_pred CccceEecCCCcccCceEEEEEEECCee
Confidence 3458999999999999999999855543
No 390
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=76.65 E-value=37 Score=27.10 Aligned_cols=86 Identities=20% Similarity=0.244 Sum_probs=48.0
Q ss_pred CCeEEEeec----CCCCcEEEEEcccCCCCCeEEEEEEecCCceee--eEEEEEEeccceEecCcceEEecCCc-EEEEE
Q psy3475 22 DLRFTSLHS----DGSDEWTLKIASSQLRDSGTYECQVSTEPKISI--GYKLNVVISKAKIIGNSELYIKSGSD-INLTC 94 (207)
Q Consensus 22 ~~r~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~~~~~~~~~~~~~~~~g~~-~~l~C 94 (207)
+..|.+... .+-..++|+|..++.+..|-|+|.+... ...+ ..=|.|.....+. -...|.. -...|
T Consensus 328 ~~~~~i~~~~~~s~dlk~STLTIkka~I~N~GCY~~~a~~g-~~~~ec~~Cl~V~d~V~f~------W~~e~~n~T~V~C 400 (500)
T PHA02914 328 DDDFMISAHANYSDDLKNSTLTIKKAHINNAGCYEAQAFMG-KFKEECRHCFKVADHVFFK------WNTEGDNETKVAC 400 (500)
T ss_pred CCceEEEEecccccchhhceEEeeeEEEEcCCceEEEEecC-cchhhhhhheEeccEEEEE------EEeccCceEEEEE
Confidence 355555544 3345679999999999999999999742 2221 1122222111110 0112333 34567
Q ss_pred EEeeC-CCCCcEEEEEeCCEEE
Q psy3475 95 VVLET-PDPPSFIYWYRGANVV 115 (207)
Q Consensus 95 ~~~~~-~~~~~~~~W~~~~~~~ 115 (207)
-+-.. ..|. .+.|..+|...
T Consensus 401 yv~sy~~kp~-si~wkvnGV~~ 421 (500)
T PHA02914 401 YAAQYDMQPF-SILWKSNGVSF 421 (500)
T ss_pred EEEecccCCc-eeEEEEccEEe
Confidence 66554 3332 68999877654
No 391
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=75.75 E-value=3.6 Score=25.92 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=21.4
Q ss_pred ceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 132 RTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 132 ~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
....|.|..++..|+|.|.-.+++..+
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG 95 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESG 95 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTS
T ss_pred cCceEEEeecCcccCceEEEEEEcCCC
Confidence 456899999999999999999998733
No 392
>PHA03189 UL14 tegument protein; Provisional
Probab=74.57 E-value=15 Score=28.00 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=25.1
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
+.++++..-+-+...+|++ ++..+-+|.|.|...|.
T Consensus 120 ~~~W~Fedlg~aq~ltLtF-~v~t~taG~Y~CvLrN~ 155 (348)
T PHA03189 120 EASWKFEDLGAAQRLTLTF-RVSTSTAGMYECVLRNE 155 (348)
T ss_pred cceeeeecccceeEEEEEE-EEEecccceEEEEeccc
Confidence 3455544444445667777 56778899999999884
No 393
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=70.11 E-value=18 Score=20.60 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=35.5
Q ss_pred EEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCeEEEEEecCC
Q psy3475 91 NLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHVLNGK 169 (207)
Q Consensus 91 ~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~~~~~v~~~~ 169 (207)
+|.|..... - -+.||-+|..+..-.. .++.+.. -.++|+|.-..+...++.+.....|
T Consensus 2 tltC~s~~s-L---PiswYcN~TRLlRlt~-------------~Tlt~~~----ltcNFtCV~qSGh~hSiWItW~~qP 59 (71)
T PF11049_consen 2 TLTCPSNAS-L---PISWYCNGTRLLRLTQ-------------QTLTVVT----LTCNFTCVGQSGHRHSIWITWYAQP 59 (71)
T ss_pred ceecCCCCC-C---cccEEECCceeeeecC-------------CeEeeee----eeEEeeecCCCCCCceEEEEEcCch
Confidence 356765443 2 3689998877643211 2333322 3579999988887777777666443
No 394
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=67.13 E-value=22 Score=24.46 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.0
Q ss_pred cEEEEEcccCCCCCeEEEEEEec
Q psy3475 35 EWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
..-|.|.+.+.+|+|.|.-++.-
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l 145 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWL 145 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEE
Confidence 44589999999999999998874
No 395
>PHA03112 IL-18 binding protein; Provisional
Probab=65.29 E-value=39 Score=22.64 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=20.2
Q ss_pred cCCcEEEEEEEeeCCCCCcEEEEEeCC
Q psy3475 86 SGSDINLTCVVLETPDPPSFIYWYRGA 112 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~~~~~~~~W~~~~ 112 (207)
.++.+.|.|.+-+.-+.-..+.|..++
T Consensus 37 ~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 37 ETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCEEEEEEECccCCCCceEEEEEcCC
Confidence 478899999988664444589999654
No 396
>PHA03282 envelope glycoprotein E; Provisional
Probab=64.47 E-value=14 Score=29.85 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.|.++. |+ +|.|.+++++|+|.|+-.+..
T Consensus 116 ~~rvs~~-n~-----tl~l~~a~~~DsG~Y~L~~~~ 145 (540)
T PHA03282 116 PPRVAVV-NG-----TLVLREARETDSGMYVLSVSR 145 (540)
T ss_pred CcceeEe-cc-----eEEEeeccccCCceEEEEecC
Confidence 5666644 33 799999999999999998864
No 397
>PHA03189 UL14 tegument protein; Provisional
Probab=62.37 E-value=69 Score=24.57 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=16.8
Q ss_pred EEEEEecccCCCeEEEEEeecCC
Q psy3475 135 RLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 135 ~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
+|++ ++..+-+|.|.|...|..
T Consensus 135 tLtF-~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 135 TLTF-RVSTSTAGMYECVLRNET 156 (348)
T ss_pred EEEE-EEEecccceEEEEecccc
Confidence 3444 566778999999999983
No 398
>KOG4597|consensus
Probab=61.55 E-value=9.3 Score=30.91 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=27.6
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEE
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 69 (207)
+...|.|.|....|+|.|+|.+.+. +-..+.+.+.+
T Consensus 255 stcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s 291 (560)
T KOG4597|consen 255 STCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSS 291 (560)
T ss_pred eeeeEEEcchhhcCCCceeeccccccceeeccceeee
Confidence 3568999999999999999999874 33455555554
No 399
>PHA03286 envelope glycoprotein E; Provisional
Probab=60.13 E-value=21 Score=28.73 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.4
Q ss_pred EEEEcccCCCCCeEEEEEEecCCce
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPKI 61 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~~ 61 (207)
+|.+.|++.+|+|.|.|.+..++..
T Consensus 308 nL~f~nA~~s~SGLYVfVl~yNGH~ 332 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVALYNGRP 332 (492)
T ss_pred ceeecCCCcccCceEEEEEEECCcc
Confidence 4999999999999999999855543
No 400
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=59.73 E-value=16 Score=29.69 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=19.7
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCCc
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEPK 60 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 60 (207)
++..|+|.|+..+++|.|.|.+..++.
T Consensus 267 ~~~~l~f~~a~~~~sGLYv~V~~~ngh 293 (439)
T PF02480_consen 267 NGVDLQFTNAPESASGLYVFVVYYNGH 293 (439)
T ss_dssp TSSSEEESS--GGG-EEEEEEEEETTE
T ss_pred CCcceEecCCCcccCceEEEEEEECCe
Confidence 345799999999999999999985554
No 401
>PHA03240 envelope glycoprotein M; Provisional
Probab=59.58 E-value=46 Score=23.99 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=16.8
Q ss_pred ceEEEEEEecccCCCeEEE
Q psy3475 132 RTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 132 ~~~~l~i~~~~~~d~g~Y~ 150 (207)
.+++|.|-++..+|.|+|.
T Consensus 103 ~NstL~i~~vn~sd~~nYc 121 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYC 121 (258)
T ss_pred ccceEEEEEEeecCcchhh
Confidence 5688999999999999985
No 402
>PHA03283 envelope glycoprotein E; Provisional
Probab=57.16 E-value=29 Score=28.59 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=22.7
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCCc
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEPK 60 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 60 (207)
++..|.+.|+..+++|.|.|.+..++.
T Consensus 313 ~~v~L~f~nap~~~SGLYVfVv~yNgH 339 (542)
T PHA03283 313 NRVDLLFKNAPASASGLYVFVLLYNGH 339 (542)
T ss_pred CCcceEeccCCcccCceEEEEEEECCe
Confidence 456899999999999999999975443
No 403
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=56.14 E-value=41 Score=20.00 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=17.8
Q ss_pred EEEEcccCCCCCeEEEEEEec
Q psy3475 37 TLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
.+.....+..|+|...|.|..
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~ 64 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASD 64 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcC
Confidence 567778889999999999943
No 404
>PHA03290 envelope glycoprotein I; Provisional
Probab=55.09 E-value=48 Score=25.70 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=26.7
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEe
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVI 71 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~ 71 (207)
...-|.|.+...+|+|.|.-++.-.+ ....-+.+.+.+
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~V 165 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLNV 165 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEEE
Confidence 34568999999999999999987432 334444555443
No 405
>KOG0200|consensus
Probab=49.17 E-value=1.2e+02 Score=25.93 Aligned_cols=113 Identities=21% Similarity=0.346 Sum_probs=56.4
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEec-cceEe-cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVIS-KAKII-GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN 113 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~-~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~ 113 (207)
+.+.+..+...|.|.|+|.+.+ ........ ..... +.... .+.......+....+ +...+.+ .+.|.....
T Consensus 13 ~~~~~~~~~~~~~~~y~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~ 85 (609)
T KOG0200|consen 13 WFLIIDSVVPGDKGFYTCLVSN-INLIISLD-DIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQP--FIKWGTNLE 85 (609)
T ss_pred ceEEEEEEEecCCccEEEEEec-CceeeEee-cccCcccccccCCCCCcceeeccccee---eeecCCC--cceeeeeec
Confidence 3788999999999999999987 11111111 11111 11111 122333334444444 2222223 566765332
Q ss_pred EE-----EecCCCceE----EEEec--ccceEEEEEEecccCCCeEEEEEeec
Q psy3475 114 VV-----NYSQRGGIS----VVTEK--QTRTSRLVISKAVTSDSGNYTCAPSS 155 (207)
Q Consensus 114 ~~-----~~~~~~~~~----~~~~~--~~~~~~l~i~~~~~~d~g~Y~C~~~n 155 (207)
.. ......... ....+ ......+.+.++...+.+.|.|...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 86 IECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred ccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCC
Confidence 11 000000000 00000 12446788889999999999998875
No 406
>PHA03281 envelope glycoprotein E; Provisional
Probab=49.10 E-value=46 Score=27.69 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=22.5
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCCc
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEPK 60 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 60 (207)
++..|.+.++..+++|.|.|.+.-.+.
T Consensus 473 n~vdL~F~nApasaSGLYVfVl~yNGH 499 (642)
T PHA03281 473 GGSALKFVDAAESLSGLYVFIIHFNGH 499 (642)
T ss_pred CCcceEeccCCcccCceEEEEEEECCe
Confidence 345799999999999999999985444
No 407
>KOG3611|consensus
Probab=48.14 E-value=36 Score=29.72 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=18.8
Q ss_pred EEEEcccCCCCCeEEEEEEecC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
.+.+..++..|.|.|.|.+...
T Consensus 613 ~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 613 GLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred ceeEEEEeeccCcccccccccC
Confidence 4778889999999999999754
No 408
>KOG0613|consensus
Probab=47.49 E-value=41 Score=30.96 Aligned_cols=121 Identities=11% Similarity=0.030 Sum_probs=72.4
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCCc-eeeeEEEEEEe----------------ccceEec---CcceEEecCCcEEEE
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNVVI----------------SKAKIIG---NSELYIKSGSDINLT 93 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~----------------~~~~~~~---~~~~~~~~g~~~~l~ 93 (207)
+..+..|.+-...+.+.|+|...+.+. ....+...+.. ++..... ...+..+.+..+.|.
T Consensus 276 ~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~ 355 (1205)
T KOG0613|consen 276 GGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMP 355 (1205)
T ss_pred CCccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeec
Confidence 445677888888888999998876432 22222222110 1111111 123344566789999
Q ss_pred EEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 94 CVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 94 C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
|...+...+. .+.|+.++.....+... .....+......+.+..+...+.+.|.|.+.|..
T Consensus 356 ~~~~~~~~p~-~~~~~~~~~~~~~~~~~--~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~ 416 (1205)
T KOG0613|consen 356 TALSGTQKPD-EAQGYHGEEVSSESLGA--LPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKG 416 (1205)
T ss_pred ccccCCcCCc-hheeecccccccccccc--cccccccccCcchhhhhcCcccccccccceeccC
Confidence 9999987774 58999876654443321 1111112244567777888889999999999983
No 409
>PHA03286 envelope glycoprotein E; Provisional
Probab=45.84 E-value=1.7e+02 Score=24.00 Aligned_cols=74 Identities=9% Similarity=-0.038 Sum_probs=43.8
Q ss_pred EEEEcccCCCCCeEEEEEEecCCce--eeeEEEEEEe-----ccceE--------------ecCcceEEecCCcEEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPKI--SIGYKLNVVI-----SKAKI--------------IGNSELYIKSGSDINLTCV 95 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~-----~~~~~--------------~~~~~~~~~~g~~~~l~C~ 95 (207)
-|+|.+++++++|.|+-...+.... ...+.|.|.. ++... ..........|+++.+.-.
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv~ 207 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASVT 207 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEEE
Confidence 6999999999999999998875432 3344555631 11111 1122334467888766544
Q ss_pred EeeC---CCCCcEEEEEe
Q psy3475 96 VLET---PDPPSFIYWYR 110 (207)
Q Consensus 96 ~~~~---~~~~~~~~W~~ 110 (207)
.... ......+.|+.
T Consensus 208 l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 208 AHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EeecccCCCceEEEEEEE
Confidence 4311 22233788976
No 410
>PHA03283 envelope glycoprotein E; Provisional
Probab=44.31 E-value=1.9e+02 Score=24.19 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=45.4
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCc-eeeeEEEEEEeccceE---------ec------------CcceEEecCCcEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNVVISKAKI---------IG------------NSELYIKSGSDINL 92 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~---------~~------------~~~~~~~~g~~~~l 92 (207)
..-|+|.+++++++|.|+-...+.+. ....+.|.|..++... .. .+......|+++.+
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l 212 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL 212 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence 34799999999999999998876444 3334455665411100 00 12233457888777
Q ss_pred EEEEeeC---CCCCcEEEEEe
Q psy3475 93 TCVVLET---PDPPSFIYWYR 110 (207)
Q Consensus 93 ~C~~~~~---~~~~~~~~W~~ 110 (207)
.-..... +.-...+.|+.
T Consensus 213 si~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 213 SVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred eEEEeeccCCCCceEEEEEEE
Confidence 5544332 22233788976
No 411
>PHA03292 envelope glycoprotein I; Provisional
Probab=42.47 E-value=87 Score=24.83 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=25.6
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVV 70 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~ 70 (207)
...|.|.+.+.+|+|.|.-++.-.+ .....+.|.+.
T Consensus 127 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsvf 163 (413)
T PHA03292 127 NVLLNITGPQPADSGAYILRVKLDHAPTADVFGLSAF 163 (413)
T ss_pred ceEEEeCCCCcccceeEEEEEEeCCCccCceeEEEEE
Confidence 4578999999999999999987433 23344444443
No 412
>PHA03289 envelope glycoprotein I; Provisional
Probab=42.20 E-value=1e+02 Score=23.87 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=25.0
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNV 69 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v 69 (207)
+.-|.|.+.+.+|+|.|.-++.-.+ ....-+.+.+
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv 156 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSV 156 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEE
Confidence 4578999999999999999987432 2334444444
No 413
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=40.59 E-value=9.7 Score=24.37 Aligned_cols=9 Identities=44% Similarity=1.025 Sum_probs=7.1
Q ss_pred CeeEEccCC
Q psy3475 1 VSWIRKRDL 9 (207)
Q Consensus 1 v~W~r~~~~ 9 (207)
|.|||+++.
T Consensus 79 I~WYR~gdl 87 (118)
T PF10856_consen 79 IFWYRQGDL 87 (118)
T ss_pred eeehhcCCC
Confidence 579999873
No 414
>PF15096 G6B: G6B family
Probab=33.26 E-value=40 Score=23.67 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=20.6
Q ss_pred ccCCCeEEEEEeecCCCCeEEEEEec
Q psy3475 142 VTSDSGNYTCAPSSSDGASVVVHVLN 167 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~~~~~~~~~v~~ 167 (207)
...|+|+|.|...........+.|+.
T Consensus 82 s~GDSGTFfCkGr~e~ESRT~LhVLG 107 (224)
T PF15096_consen 82 SAGDSGTFFCKGRQEEESRTVLHVLG 107 (224)
T ss_pred hcCCccceEecCcccccceeeeeeec
Confidence 45799999999887766777777774
No 415
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=31.80 E-value=15 Score=29.72 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=12.1
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEeccce---------E-----------ecCcceEEecCCcEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISKAK---------I-----------IGNSELYIKSGSDINLT 93 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~---------~-----------~~~~~~~~~~g~~~~l~ 93 (207)
..|.|.+++.+|+|.|+-...+.+. ....+.|.|..+... + ..........|+++.+.
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~ 168 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLS 168 (439)
T ss_dssp ---------------------------------------------------------SEEEEEE--SEEE--TT--EE--
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEe
Confidence 4799999999999999998876433 233345555432111 0 11223344678877665
Q ss_pred EEEeeC----CCCCcEEEEEe
Q psy3475 94 CVVLET----PDPPSFIYWYR 110 (207)
Q Consensus 94 C~~~~~----~~~~~~~~W~~ 110 (207)
-.+... .+....+.|+.
T Consensus 169 v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 169 VHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp -EEEEEESSS--EEEEEEEEE
T ss_pred EEEEeccCCCCCeeEEEEEEE
Confidence 544332 12223788976
No 416
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=29.56 E-value=1.3e+02 Score=17.95 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=32.8
Q ss_pred cEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCeEE
Q psy3475 89 DINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVV 162 (207)
Q Consensus 89 ~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~~~ 162 (207)
...|.+.+.+. .. .+.|+.||..+..... ...+.+ .....|.|+-.+....+....
T Consensus 31 ~~~l~l~a~~~-~~--~~~W~vdg~~~g~~~~------------~~~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RG--PVYWFVDGEPLGTTQP------------GHQLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CC--cEEEEECCEEcccCCC------------CCeEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 45566666665 34 6899999999843322 112222 224567777777655444443
No 417
>PHA03273 envelope glycoprotein C; Provisional
Probab=28.70 E-value=3.4e+02 Score=22.45 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=39.0
Q ss_pred EEEEEEecccCCCeEEEEEeecCC-----CCeEEEEEecCCcccceeeecccccceeeeeeeeeEEecCcceEEEeec
Q psy3475 134 SRLVISKAVTSDSGNYTCAPSSSD-----GASVVVHVLNGKKFNKLSSLRGRVGITLKFALRRSRVRFPEESIFFAWS 206 (207)
Q Consensus 134 ~~l~i~~~~~~d~g~Y~C~~~n~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
..|.|..++...+|.|+..+.+.. +..+.+.....+......+ ..+.+.-....+...-.||..+.-|-|+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf 273 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWY 273 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 458999999999999998865542 2233333343332211111 1112223334455555667777777775
No 418
>PHA02935 Hypothetical protein; Provisional
Probab=27.03 E-value=1.9e+02 Score=20.72 Aligned_cols=19 Identities=37% Similarity=0.548 Sum_probs=15.1
Q ss_pred EEEcccCCCCCeEEEEEEe
Q psy3475 38 LKIASSQLRDSGTYECQVS 56 (207)
Q Consensus 38 L~i~~~~~~d~G~Y~C~~~ 56 (207)
|.|..++-+|+|.|.-.-.
T Consensus 104 lnisslryedsgsykgvsh 122 (349)
T PHA02935 104 LNISSLRYEDSGSYKGVSH 122 (349)
T ss_pred eeccceeeccCCcccCchh
Confidence 5788889999999976543
No 419
>PHA03270 envelope glycoprotein C; Provisional
Probab=24.09 E-value=4.1e+02 Score=21.82 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=41.7
Q ss_pred eEEEEEEecccCCCeEEEEEeecC-----CCCeEEEEEecCCcccceeeecccccceeeeeeeeeEEecCcceEEEeec
Q psy3475 133 TSRLVISKAVTSDSGNYTCAPSSS-----DGASVVVHVLNGKKFNKLSSLRGRVGITLKFALRRSRVRFPEESIFFAWS 206 (207)
Q Consensus 133 ~~~l~i~~~~~~d~g~Y~C~~~n~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
...|.|..++...+|.|+...-+. .+..+++.....+......+ ..+.+.-..-.+...-.||..+.-|-|+
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf 257 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWF 257 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 356999999999999999996664 22334444443332211111 1122333334455556667777777775
No 420
>PHA03291 envelope glycoprotein I; Provisional
Probab=23.14 E-value=2.4e+02 Score=22.34 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=25.6
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCc-eeeeEEEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNVV 70 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~ 70 (207)
..-|.|.+...+|+|.|.-++.-.+. ....+.|.+.
T Consensus 128 ~vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 128 QPLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred ceEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 45689999999999999999875432 3344455444
No 421
>KOG4637|consensus
Probab=21.67 E-value=1.6e+02 Score=23.48 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=20.9
Q ss_pred CCCcEEEEEcccCCCCCeEEEEEEecCCcee
Q psy3475 32 GSDEWTLKIASSQLRDSGTYECQVSTEPKIS 62 (207)
Q Consensus 32 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 62 (207)
+..++++.|+. .++.|.|.|.+...+...
T Consensus 350 g~~dGtFLIR~--ss~~g~yalSV~~~~~V~ 378 (464)
T KOG4637|consen 350 GKPDGTFLIRE--SSKGGCYALSVVHDGEVK 378 (464)
T ss_pred CCCCCeEEEee--ccCCCceEEEEEECCcee
Confidence 33455788876 789999999987655443
No 422
>PHA03281 envelope glycoprotein E; Provisional
Probab=20.74 E-value=5.3e+02 Score=21.95 Aligned_cols=75 Identities=9% Similarity=0.141 Sum_probs=44.0
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-Cc-eeeeEEEEEEecc------ceEec-----------CcceEEecCCcEEEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PK-ISIGYKLNVVISK------AKIIG-----------NSELYIKSGSDINLTCVV 96 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~-~~~~~~l~v~~~~------~~~~~-----------~~~~~~~~g~~~~l~C~~ 96 (207)
..|+|.+++..++|.|+-..... +. ....+.|.|.... +.+.+ ........|+++.+.-..
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L 377 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHL 377 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEE
Confidence 37999999999999999877643 22 3335556665422 11111 122334578887666555
Q ss_pred eeC---CCCCcEEEEEe
Q psy3475 97 LET---PDPPSFIYWYR 110 (207)
Q Consensus 97 ~~~---~~~~~~~~W~~ 110 (207)
... .+....+.|+.
T Consensus 378 ~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 378 QYKIHDAPFDLLLEWLY 394 (642)
T ss_pred eeeccCCCceeEEEEEE
Confidence 432 12223788976
Done!