Query psy3475
Match_columns 207
No_of_seqs 125 out of 1187
Neff 11.0
Searched_HMMs 29240
Date Fri Aug 16 17:39:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fa8_A Secreted protein BARF1; 99.9 3.1E-23 1.1E-27 146.9 16.9 138 23-166 58-198 (203)
2 3umt_A SCFV heavy chain and li 99.9 4.2E-20 1.4E-24 135.2 17.2 163 1-167 36-245 (256)
3 3rbs_A Myomesin-1; immunoglobu 99.9 6.2E-20 2.1E-24 130.3 16.9 130 22-161 47-198 (207)
4 2yd6_A PTPRD protein; hydrolas 99.9 2.8E-19 9.4E-24 127.2 20.2 131 34-168 61-205 (212)
5 1nqb_A Single-chain antibody f 99.9 9.3E-20 3.2E-24 133.5 17.8 154 1-156 34-218 (256)
6 2v44_A NCAM2, neural cell adhe 99.8 8E-20 2.7E-24 127.5 16.3 142 1-159 33-176 (189)
7 2ghw_B Anti-SARS SCFV antibody 99.8 8.5E-20 2.9E-24 132.7 17.0 152 1-156 36-227 (247)
8 3juy_B 3B3 single chain varian 99.8 1.6E-19 5.6E-24 132.0 18.3 152 1-156 40-242 (256)
9 3uzq_A Anti-dengue MAB 4E11; d 99.8 7.9E-20 2.7E-24 133.5 16.5 165 1-167 35-244 (253)
10 3mj8_L Stimulatory hamster ant 99.8 1.1E-20 3.6E-25 134.5 11.4 155 1-157 32-200 (213)
11 2jll_A NCAM2, neural cell adhe 99.8 2.1E-19 7.3E-24 138.6 19.6 151 1-159 32-183 (389)
12 1epf_A NCAM, protein (neural c 99.8 3.9E-20 1.3E-24 129.2 13.9 130 22-159 49-180 (191)
13 2iep_A Muscle-specific kinase 99.8 8E-20 2.7E-24 127.7 14.4 122 22-156 52-175 (192)
14 2r15_A Myomesin-1; sarcomeric 99.8 1.6E-19 5.3E-24 128.1 15.9 130 22-158 47-198 (212)
15 2p1y_A Bispecific alpha/beta T 99.8 4.7E-19 1.6E-23 128.0 17.9 153 1-156 31-221 (238)
16 1qok_A MFE-23 recombinant anti 99.8 5.1E-19 1.8E-23 131.3 18.4 151 1-156 60-253 (282)
17 3b43_A Titin; I-SET IG fold, e 99.8 3.9E-19 1.3E-23 144.0 18.9 120 35-160 346-466 (570)
18 2j8h_A Titin, connectin; cardi 99.8 1.7E-19 5.7E-24 126.6 14.7 130 22-158 49-185 (197)
19 2fbj_H IGA-kappa J539 FAB (hea 99.8 1.7E-19 5.7E-24 129.2 14.9 162 1-164 34-215 (220)
20 2a38_A Titin; Z1Z2, structural 99.8 7E-19 2.4E-23 123.0 17.8 119 34-158 61-183 (194)
21 3tv3_L PGT128 light chain, IG 99.8 2E-20 6.9E-25 132.9 9.0 155 1-157 30-198 (211)
22 1mju_H Immunoglobulin MS6-12; 99.8 8.4E-20 2.9E-24 131.4 12.3 154 1-156 34-203 (227)
23 3s96_B 3B5H10 FAB light chain; 99.8 6.8E-20 2.3E-24 130.6 11.7 155 1-157 33-207 (218)
24 3gkz_A Anti-methamphetamine si 99.8 4.2E-19 1.4E-23 129.9 16.1 153 1-156 42-234 (257)
25 1f3r_B FV antibody fragment; I 99.8 4.4E-19 1.5E-23 129.9 16.1 152 1-156 34-231 (257)
26 3m8o_H Immunoglobulin A1 heavy 99.8 2.3E-19 8E-24 128.4 14.2 163 1-165 34-218 (221)
27 2yd1_A Tyrosine-protein phosph 99.8 6.6E-19 2.3E-23 125.1 16.3 137 22-168 51-201 (212)
28 2rik_A Titin; I-SET IG fold, p 99.8 3.6E-18 1.2E-22 126.3 20.6 130 34-169 59-193 (284)
29 2wv3_A Neuroplastin; igcam, me 99.8 3.3E-18 1.1E-22 119.4 19.2 122 34-159 54-179 (190)
30 1dee_B IGM RF 2A2; FAB-IBP com 99.8 4.2E-19 1.5E-23 127.3 14.7 157 1-158 34-215 (223)
31 3ux9_B SCFV antibody; five hel 99.8 9.5E-19 3.2E-23 127.9 16.4 154 1-156 36-235 (256)
32 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.8 1.9E-18 6.5E-23 126.4 17.9 152 1-156 35-232 (256)
33 3qhz_H Human monoclonal antibo 99.8 2.7E-19 9.2E-24 129.1 13.1 155 1-157 36-216 (232)
34 1rhf_A Tyrosine-protein kinase 99.8 1.1E-18 3.9E-23 120.9 15.7 109 35-157 59-169 (182)
35 2gki_A Nuclease; anti-DNA anti 99.8 1.3E-18 4.5E-23 129.7 16.9 169 1-171 56-276 (291)
36 3lcy_A Titin; A-BAND, IG tande 99.8 2.4E-18 8.2E-23 120.5 17.3 130 22-159 51-185 (197)
37 3d9a_L Light chain of hyhel10 99.8 6.4E-19 2.2E-23 125.2 14.3 154 1-156 33-199 (213)
38 3jz7_A MCAR, CAR, coxsackievir 99.8 2E-19 6.9E-24 127.5 11.7 129 22-160 69-202 (214)
39 2rik_A Titin; I-SET IG fold, p 99.8 1.6E-18 5.6E-23 128.2 16.9 118 35-158 154-272 (284)
40 3kld_A Contactin 4, axcam, BIG 99.8 4.8E-19 1.6E-23 136.8 14.3 113 36-158 258-371 (384)
41 1lk3_L 9D7 light chain; antige 99.8 7.7E-19 2.6E-23 124.6 14.3 154 1-156 32-198 (210)
42 3d9a_H Heavy chain of hyhel10 99.8 1.4E-19 4.7E-24 128.6 10.3 153 1-157 34-201 (210)
43 1q9r_B S25-2 FAB (IGG1K) heavy 99.8 3.2E-19 1.1E-23 127.7 12.3 154 1-158 34-211 (222)
44 2xzc_L FAB A.17 light chain; i 99.8 1.5E-18 5E-23 123.7 15.6 154 1-156 34-201 (216)
45 3r06_A Anti-mouse CD3epsilon a 99.8 1.3E-19 4.4E-24 128.8 10.1 154 1-156 33-199 (213)
46 3sbw_C Programmed cell death 1 99.8 4.1E-18 1.4E-22 121.7 17.7 133 23-159 66-200 (222)
47 3sgj_C Human FCG3A receptor; r 99.8 4.4E-19 1.5E-23 125.6 12.3 119 36-169 54-176 (204)
48 3r4d_A CEA-related cell adhesi 99.8 8.9E-19 3E-23 123.9 13.8 122 22-158 62-187 (208)
49 2yd9_A Receptor-type tyrosine- 99.8 3.1E-18 1.1E-22 128.0 17.5 128 23-157 50-187 (304)
50 1c1e_H Catalytic antibody 1E9 99.8 2.9E-19 9.9E-24 127.6 11.3 154 1-157 34-207 (219)
51 2znx_A SCFV; fluorotryptohpan, 99.8 2.5E-18 8.7E-23 124.7 16.1 154 1-156 33-222 (242)
52 1qz1_A Neural cell adhesion mo 99.8 1.8E-18 6.1E-23 128.3 15.6 127 22-156 49-177 (291)
53 2v5t_A NCAM2, N-CAM 2, neural 99.8 7E-19 2.4E-23 122.5 12.6 124 22-158 48-176 (189)
54 1op3_H FAB 2G12, heavy chain; 99.8 2.3E-19 7.9E-24 128.9 10.2 154 1-156 34-211 (225)
55 2v5m_A Dscam; neurobiology SPL 99.8 2.2E-18 7.5E-23 132.9 16.4 107 37-159 271-378 (388)
56 1dn0_B IGM-kappa cold agglutin 99.8 2.6E-18 8.9E-23 124.0 15.7 157 1-158 34-215 (232)
57 1svz_A Immunoglobulin;, single 99.8 1.9E-18 6.6E-23 125.6 15.1 154 1-156 38-228 (247)
58 2va4_A NCAM2, N-CAM 2, neural 99.8 7.1E-18 2.4E-22 117.6 17.4 129 22-159 48-182 (192)
59 2c5d_C AXL oncogene, tyrosine- 99.8 5.7E-18 2E-22 118.6 16.9 119 35-165 67-191 (195)
60 3auv_A SC-DSFV derived from th 99.8 4.5E-18 1.5E-22 125.8 17.1 154 1-156 44-235 (276)
61 1ypz_F T-cell receptor gamma c 99.8 8.4E-19 2.9E-23 126.4 12.8 153 1-156 35-213 (230)
62 1moe_A Anti-CEA MAB T84.66; an 99.8 1.9E-18 6.5E-23 125.0 14.7 154 1-156 37-220 (240)
63 3fku_X Neutralizing antibody F 99.8 5.6E-19 1.9E-23 131.0 11.6 154 1-157 34-234 (280)
64 3esu_F Antibody 14B7* light ch 99.8 1.8E-18 6E-23 126.0 14.0 153 1-155 36-231 (250)
65 1q0x_L FAB 9B1, light chain; a 99.8 7.9E-19 2.7E-23 124.7 11.9 153 1-156 35-201 (212)
66 1hxm_B Gamma-delta T-cell rece 99.8 1.1E-18 3.6E-23 126.8 12.7 153 1-156 35-215 (242)
67 2rcj_C Light chain; immunoglob 99.8 8.2E-18 2.8E-22 134.7 18.7 154 1-156 32-200 (523)
68 3omz_A Human vdelta1 gamma del 99.8 6.2E-18 2.1E-22 123.8 16.6 153 1-155 34-230 (259)
69 2c1o_A IGK-C protein; FAB frag 99.8 2.2E-18 7.6E-23 125.7 14.0 154 1-156 75-241 (254)
70 1fnl_A Low affinity immunoglob 99.8 2.2E-18 7.4E-23 119.0 13.2 106 36-156 54-159 (175)
71 3liz_H 4C3 monoclonal antibody 99.8 6.3E-19 2.1E-23 128.8 10.8 156 1-158 34-208 (253)
72 3bae_H WO2 IGG2A FAB fragment 99.8 8.7E-19 3E-23 126.1 11.3 153 1-157 36-213 (228)
73 2gjj_A A21 single-chain antibo 99.8 6E-18 2E-22 124.4 16.0 154 1-156 43-239 (264)
74 1za6_B IGG heavy chain; immuno 99.8 1.2E-18 4.1E-23 132.7 12.6 156 1-158 34-205 (344)
75 2ocw_A Polymeric-immunoglobuli 99.8 7.2E-18 2.4E-22 136.7 17.7 148 20-169 390-548 (585)
76 1pz5_B Heavy chain of FAB (SYA 99.8 1.2E-18 4E-23 124.6 11.6 153 1-158 34-209 (220)
77 3b43_A Titin; I-SET IG fold, e 99.8 7.5E-18 2.6E-22 136.4 17.6 129 35-169 252-385 (570)
78 2x1w_L Vascular endothelial gr 99.8 2.2E-18 7.6E-23 122.7 12.8 131 37-167 65-207 (213)
79 2ocw_A Polymeric-immunoglobuli 99.8 3.9E-17 1.3E-21 132.3 21.7 145 22-167 61-221 (585)
80 1f2q_A High affinity immunoglo 99.8 2.4E-18 8.1E-23 118.9 12.5 119 35-169 50-173 (176)
81 1f97_A Junction adhesion molec 99.8 1.6E-18 5.4E-23 122.7 11.6 126 22-157 57-192 (212)
82 2xqy_G A13-D6.3 monoclonal ant 99.8 1E-18 3.5E-23 128.3 10.9 154 1-156 40-211 (261)
83 2ec8_A MAST/stem cell growth f 99.8 2.5E-17 8.4E-22 132.0 19.8 123 35-159 272-400 (524)
84 4frw_A Poliovirus receptor-rel 99.8 1.7E-17 5.9E-22 117.5 17.0 152 1-157 34-198 (218)
85 3laf_A Deleted in colorectal c 99.8 3.5E-18 1.2E-22 132.3 14.3 114 37-159 276-390 (403)
86 1x9q_A SCFV, 4M5.3 anti-fluore 99.8 9.1E-18 3.1E-22 123.6 15.9 154 1-156 52-254 (268)
87 2zg1_A Sialic acid-binding IG- 99.8 1.1E-18 3.9E-23 123.9 10.5 142 1-156 39-199 (214)
88 2ny1_B T-cell surface glycopro 99.8 1.6E-18 5.5E-23 120.5 11.0 110 35-167 67-179 (184)
89 3sob_L Antibody light chain; b 99.8 1.1E-18 3.7E-23 125.9 10.3 154 1-156 56-222 (237)
90 3p3y_A Neurofascin; IG domains 99.8 8.2E-18 2.8E-22 130.2 15.8 115 37-158 276-391 (404)
91 3nl4_H Antigen binding fragmen 99.8 3.9E-18 1.3E-22 121.5 12.9 151 1-157 33-201 (215)
92 3mj6_A Junctional adhesion mol 99.8 6.8E-18 2.3E-22 123.9 14.6 159 1-166 40-236 (268)
93 3pl6_D MBP peptide / T-cell re 99.8 5E-18 1.7E-22 124.9 13.7 155 1-156 57-238 (268)
94 2nzi_A Titin; IG-domain, FNIII 99.8 8.5E-18 2.9E-22 125.6 15.1 142 23-171 50-201 (305)
95 3nl4_L Antigen binding fragmen 99.8 9E-19 3.1E-23 124.4 9.3 150 1-154 33-198 (213)
96 1qz1_A Neural cell adhesion mo 99.8 7.5E-18 2.6E-22 125.0 14.6 116 37-158 156-278 (291)
97 3grw_A Fibroblast growth facto 99.8 6.1E-18 2.1E-22 122.2 13.8 122 36-159 72-207 (241)
98 2wng_A Tyrosine-protein phosph 99.8 4.2E-18 1.4E-22 128.7 13.3 155 1-158 36-204 (327)
99 3tv3_H PGT128 heavy chain, IG 99.8 1.6E-18 5.5E-23 125.6 10.5 155 1-157 36-224 (239)
100 3bkj_L WO2 IGG2A FAB fragment 99.8 6.8E-18 2.3E-22 123.1 13.9 154 1-156 71-237 (252)
101 3k0w_A Mucosa-associated lymph 99.8 5.5E-18 1.9E-22 121.0 13.2 117 35-166 64-201 (218)
102 4ei6_B Vbeta16 XV19 type II na 99.8 7.9E-18 2.7E-22 122.1 14.2 155 1-156 33-216 (245)
103 1hng_A CD2; T lymphocyte adhes 99.8 2.8E-18 9.7E-23 118.7 11.2 113 21-160 51-166 (176)
104 4dzb_B Vbeta2 (MAIT T cell rec 99.8 7.3E-18 2.5E-22 122.4 13.9 155 1-156 33-217 (246)
105 3ojm_B Fibroblast growth facto 99.8 4.4E-18 1.5E-22 122.0 12.6 133 36-170 76-224 (231)
106 3ejj_X Macrophage colony-stimu 99.8 1.4E-17 4.7E-22 123.5 15.6 144 1-161 122-272 (289)
107 3qs9_E FL cytokine receptor; i 99.8 3.4E-18 1.1E-22 137.2 13.1 111 36-158 290-402 (527)
108 4f80_A Butyrophilin subfamily 99.8 2.8E-17 9.6E-22 117.9 16.6 120 34-159 81-202 (226)
109 2wim_A N-CAM 2, NCAM2, neural 99.8 1E-17 3.5E-22 124.3 14.7 127 22-157 48-176 (291)
110 3bn9_D E2 FAB heavy chain; ant 99.8 5.1E-19 1.8E-23 129.6 7.5 153 1-156 34-216 (257)
111 4fqp_A Poliovirus receptor; im 99.8 5.4E-18 1.9E-22 127.3 13.2 120 37-167 178-304 (313)
112 1vca_A VCAM-D1,2, human vascul 99.8 7.4E-18 2.5E-22 119.1 12.9 121 35-156 53-176 (202)
113 3n9g_H FAB fragment of MAB CR4 99.8 7E-18 2.4E-22 121.5 13.0 154 1-157 34-212 (230)
114 3q5y_A TCR N15 beta; IG, T cel 99.8 7.4E-18 2.5E-22 122.0 13.0 155 1-156 33-210 (240)
115 3u2s_H PG9 heavy chain; greek 99.8 1.9E-18 6.5E-23 125.9 9.9 155 1-157 33-225 (248)
116 1cs6_A Axonin-1; neural cell a 99.8 1.1E-17 3.6E-22 128.9 14.4 114 35-158 256-370 (382)
117 1bih_A Hemolin; insect immunit 99.8 5.9E-18 2E-22 130.7 12.5 114 35-159 269-385 (395)
118 3nfj_J T cell receptor beta ch 99.8 3.9E-18 1.3E-22 123.8 10.2 155 1-156 33-216 (245)
119 2o26_X MAST/stem cell growth f 99.8 1.2E-17 4.3E-22 123.9 13.1 120 37-159 146-277 (290)
120 1nbq_A JAM, junctional adhesio 99.8 6.4E-19 2.2E-23 124.5 5.6 121 36-158 68-195 (209)
121 2j6e_L IGM, FAB light chain; a 99.8 6.7E-19 2.3E-23 126.9 5.8 154 1-156 53-221 (234)
122 3qib_D 2B4 beta chain; IG doma 99.8 1.7E-17 5.9E-22 122.2 13.3 155 1-156 58-241 (270)
123 1iga_A IGA1; immunoglobulin; N 99.8 1.2E-16 4.2E-21 126.6 19.1 157 1-158 35-214 (475)
124 3bp6_B Programmed cell death 1 99.8 5.9E-17 2E-21 114.1 15.5 130 22-160 52-183 (202)
125 3qs7_E FL cytokine receptor; i 99.8 1.3E-17 4.5E-22 130.4 13.2 111 36-158 290-402 (423)
126 1c5d_H Monoclonal antibody aga 99.8 9.6E-18 3.3E-22 119.6 11.4 151 1-157 34-203 (215)
127 2y23_A Myomesin; structural pr 99.8 6E-17 2.1E-21 121.2 16.3 141 1-156 34-188 (312)
128 3pv7_A B7-H6, IG-like domain-c 99.8 1.6E-16 5.6E-21 115.4 18.1 155 1-158 40-212 (248)
129 2wim_A N-CAM 2, NCAM2, neural 99.8 6.7E-18 2.3E-22 125.2 10.7 125 22-159 144-273 (291)
130 1nfd_E H57 FAB; complex (immun 99.8 1.5E-18 5.1E-23 123.3 6.9 153 1-156 31-198 (212)
131 3s97_C Contactin-1; carbonic a 99.8 1.4E-17 4.7E-22 116.9 11.7 112 37-158 67-189 (201)
132 2y25_A Myomesin; structural pr 99.7 2.7E-17 9.3E-22 123.3 13.7 129 23-158 153-303 (317)
133 2d3v_A Leukocyte immunoglobuli 99.7 2.9E-17 1E-21 115.3 13.0 118 34-156 56-178 (196)
134 3b5h_A Cervical EMMPRIN, HAB18 99.7 1.7E-16 5.7E-21 110.1 16.3 116 35-158 50-171 (184)
135 1hzh_H IGG, immunoglobulin hea 99.7 8.5E-18 2.9E-22 132.6 10.7 153 1-157 34-216 (457)
136 3bqu_C 3H6 FAB light chain; be 99.7 2.1E-18 7.1E-23 124.3 6.2 154 1-156 55-221 (233)
137 1igt_B IGG2A intact antibody - 99.7 7.1E-17 2.4E-21 126.8 15.4 156 1-159 34-208 (444)
138 2fbo_J V1V2;, variable region- 99.7 7.7E-18 2.6E-22 122.3 9.0 130 22-156 79-235 (250)
139 3mlr_H Human monoclonal anti-H 99.7 1.5E-17 5E-22 119.5 10.0 154 1-157 34-213 (226)
140 4i0k_A CD276 antigen; immunogl 99.7 5.2E-17 1.8E-21 115.9 12.7 134 22-159 57-195 (222)
141 3oq3_B IFN-alpha/beta binding 99.7 2.1E-16 7.1E-21 119.6 16.6 122 37-159 183-319 (329)
142 4dkd_C Macrophage colony-stimu 99.7 1.4E-17 5E-22 123.5 10.0 120 37-159 145-270 (292)
143 2v9r_A Roundabout homolog 1; p 99.7 1.7E-17 5.7E-22 117.5 9.8 122 38-168 74-203 (212)
144 3u83_A Poliovirus receptor-rel 99.7 1.8E-16 6.1E-21 119.7 16.0 126 22-157 79-217 (331)
145 1jbj_A CD3 epsilon and gamma e 99.7 3.9E-18 1.3E-22 119.0 6.4 108 37-160 45-179 (186)
146 1qgc_4 Protein (immunoglobulin 99.7 1.4E-16 4.9E-21 124.7 15.9 131 36-167 181-338 (438)
147 3sob_H Antibody heavy chain, l 99.7 4.4E-17 1.5E-21 119.2 12.1 154 1-157 57-238 (256)
148 1qgc_4 Protein (immunoglobulin 99.7 7.4E-17 2.5E-21 126.3 14.2 156 1-158 37-205 (438)
149 2wbj_D OB TCR; transmembrane, 99.7 1.1E-16 3.6E-21 118.6 14.2 155 1-156 56-242 (279)
150 2y23_A Myomesin; structural pr 99.7 3.6E-16 1.2E-20 116.9 17.2 131 22-161 152-303 (312)
151 1bec_A 14.3.D T cell antigen r 99.7 6.2E-17 2.1E-21 117.1 12.5 155 1-156 30-209 (238)
152 1e07_A Carcinoembryonic antige 99.7 7.5E-16 2.6E-20 126.2 20.4 125 36-169 71-203 (642)
153 2rcj_C Light chain; immunoglob 99.7 1.5E-16 5.3E-21 127.3 15.8 120 36-156 281-406 (523)
154 3p2t_A Leukocyte immunoglobuli 99.7 1.5E-16 5.2E-21 111.6 14.0 116 34-156 56-177 (196)
155 3u83_A Poliovirus receptor-rel 99.7 3.1E-17 1.1E-21 123.8 11.2 112 37-159 195-309 (331)
156 4fqp_A Poliovirus receptor; im 99.7 2E-16 6.7E-21 118.8 15.3 152 1-156 37-199 (313)
157 2pet_A Lutheran blood group gl 99.7 5.7E-16 1.9E-20 111.1 17.1 118 37-156 78-211 (231)
158 2vr9_A Roundabout 1, ROBO; imm 99.7 1.2E-17 4.1E-22 118.9 8.2 114 37-157 70-193 (217)
159 4dep_C Interleukin-1 receptor 99.7 7.2E-17 2.5E-21 122.8 13.0 110 37-156 80-199 (349)
160 3eow_R Poliovirus receptor; im 99.7 1.1E-17 3.6E-22 119.6 7.7 144 22-170 61-213 (221)
161 1e07_A Carcinoembryonic antige 99.7 6.5E-16 2.2E-20 126.6 19.3 115 22-157 332-449 (642)
162 4fom_A Poliovirus receptor-rel 99.7 8E-17 2.8E-21 120.5 12.2 128 23-156 62-194 (308)
163 3laf_A Deleted in colorectal c 99.7 2.8E-16 9.7E-21 121.6 15.6 123 37-167 178-311 (403)
164 1oga_E TRBC1, T-cell receptor 99.7 2.6E-16 8.8E-21 114.8 14.4 155 1-156 34-215 (252)
165 3dmk_A DOWN syndrome cell adhe 99.7 4.4E-16 1.5E-20 130.8 17.7 106 37-158 307-413 (816)
166 2yd9_A Receptor-type tyrosine- 99.7 1.9E-16 6.4E-21 118.4 13.8 111 37-159 165-280 (304)
167 1ugn_A LIR1, leukocyte immunog 99.7 2.9E-16 9.9E-21 110.3 14.0 116 36-156 58-179 (198)
168 2ifg_A High affinity nerve gro 99.7 2.8E-17 9.7E-22 125.3 9.5 120 34-159 210-334 (347)
169 2gi7_A GPVI protein; IG-like d 99.7 7.9E-17 2.7E-21 112.1 10.5 109 36-156 52-166 (184)
170 1itb_B Type 1 interleukin-1 re 99.7 1.5E-15 5.1E-20 113.9 18.1 123 37-161 163-305 (315)
171 3iu4_H CHP3 FAB heavy chain; a 99.7 2.7E-17 9.2E-22 120.8 8.3 154 1-157 34-211 (263)
172 3ry4_A Low affinity immunoglob 99.7 1.6E-16 5.5E-21 108.8 11.7 105 37-157 52-157 (170)
173 3rjd_A High affinity immunoglo 99.7 6E-16 2E-20 112.9 15.3 116 36-167 48-167 (262)
174 4fom_A Poliovirus receptor-rel 99.7 1.5E-17 5.2E-22 124.5 6.7 124 37-170 173-303 (308)
175 1hnf_A CD2; T lymphocyte adhes 99.7 4.2E-16 1.4E-20 108.2 13.5 114 21-161 56-172 (182)
176 1uct_A Immunoglobulin alpha FC 99.7 9.3E-17 3.2E-21 114.8 10.4 110 37-156 65-179 (218)
177 3oq3_B IFN-alpha/beta binding 99.7 1.6E-16 5.4E-21 120.2 12.2 111 37-156 90-204 (329)
178 2if7_A SLAM family member 6; N 99.7 1.2E-15 4E-20 107.0 15.8 114 23-159 62-181 (193)
179 3to4_D NKT vbeta2 (mouse varia 99.7 6.3E-17 2.2E-21 118.1 9.5 153 1-156 33-216 (253)
180 2ec8_A MAST/stem cell growth f 99.7 4.1E-16 1.4E-20 124.9 15.0 153 1-169 146-311 (524)
181 2o26_X MAST/stem cell growth f 99.7 4.2E-16 1.4E-20 115.6 14.0 119 36-166 57-182 (290)
182 2dru_A Chimera of CD48 antigen 99.7 2.9E-16 1E-20 108.9 11.9 110 23-158 60-169 (180)
183 1nkr_A P58-CL42 KIR; inhibitor 99.7 2.4E-15 8.3E-20 105.9 16.8 113 35-156 62-183 (201)
184 3ejj_X Macrophage colony-stimu 99.7 5.1E-16 1.7E-20 115.0 13.9 125 35-167 50-181 (289)
185 2vol_A Murine IGG FC; FC, zinc 99.7 6.7E-17 2.3E-21 114.5 8.5 121 36-156 68-194 (207)
186 3kld_A Contactin 4, axcam, BIG 99.7 1.3E-15 4.5E-20 117.6 15.5 121 37-167 158-294 (384)
187 1igy_B IGG1 intact antibody MA 99.7 4.7E-17 1.6E-21 127.6 7.2 157 1-159 33-204 (434)
188 4fmk_A Poliovirus receptor-rel 99.7 7.7E-16 2.6E-20 109.5 12.6 119 34-156 81-203 (225)
189 1ry7_B FGFR-3, fibroblast grow 99.7 4.7E-17 1.6E-21 123.1 5.9 123 35-159 179-316 (334)
190 2wng_A Tyrosine-protein phosph 99.7 4.5E-16 1.5E-20 117.5 11.1 123 37-161 181-310 (327)
191 1zvo_C Myeloma immunoglobulin 99.7 5.1E-15 1.8E-19 118.4 17.6 155 1-157 36-219 (512)
192 3rjd_A High affinity immunoglo 99.7 2E-15 7E-20 110.1 14.0 110 37-158 132-247 (262)
193 1ccz_A Protein (CD58); LFA-3, 99.7 1.8E-15 6E-20 104.1 12.8 101 36-159 60-160 (171)
194 3dmk_A DOWN syndrome cell adhe 99.7 6.8E-16 2.3E-20 129.6 12.9 118 34-159 675-798 (816)
195 1sy6_A T-cell surface glycopro 99.7 4.2E-16 1.4E-20 110.2 9.8 111 37-158 50-191 (204)
196 1oll_A NK receptor; immune sys 99.7 1.8E-15 6E-20 105.6 12.8 111 34-156 55-171 (188)
197 3o4o_C Interleukin-1 receptor 99.7 7E-16 2.4E-20 116.9 11.5 114 37-157 82-203 (339)
198 1wio_A CD4, T-cell surface gly 99.7 1.7E-15 5.9E-20 115.9 13.6 99 35-161 254-355 (363)
199 2rgs_A I, IG gamma-2B heavy ch 99.7 3.1E-16 1E-20 112.0 8.6 121 36-156 76-202 (218)
200 3u1s_H FAB PGT145 heavy chain; 99.7 6.3E-16 2.2E-20 113.8 10.1 154 1-157 57-252 (267)
201 1b6u_A KIR2DL3, P58 killer cel 99.7 3.7E-15 1.3E-19 109.0 14.0 127 34-169 60-203 (257)
202 1ry7_B FGFR-3, fibroblast grow 99.6 9.5E-17 3.2E-21 121.4 5.3 127 36-167 61-216 (334)
203 4dep_C Interleukin-1 receptor 99.6 4.2E-16 1.4E-20 118.6 8.9 122 37-160 178-323 (349)
204 1cs6_A Axonin-1; neural cell a 99.6 4E-15 1.4E-19 114.4 14.3 119 37-167 159-293 (382)
205 1ypz_E T cell receptor delta, 99.6 9.1E-15 3.1E-19 103.6 15.0 147 1-156 32-195 (207)
206 1bih_A Hemolin; insect immunit 99.6 4.1E-15 1.4E-19 114.7 14.4 138 22-168 152-308 (395)
207 1wio_A CD4, T-cell surface gly 99.6 7.5E-16 2.6E-20 117.9 10.1 99 35-156 66-164 (363)
208 2y25_A Myomesin; structural pr 99.6 4.1E-16 1.4E-20 116.9 8.2 119 35-159 60-189 (317)
209 1i1c_A IGG2A, IG gamma-2A chai 99.6 5.2E-16 1.8E-20 112.4 8.0 121 36-156 82-208 (239)
210 3vh8_G Killer cell immunoglobu 99.6 4.5E-15 1.5E-19 111.5 13.0 125 36-167 74-215 (316)
211 3qs7_E FL cytokine receptor; i 99.6 1.1E-14 3.7E-19 113.9 15.5 122 44-169 199-325 (423)
212 1itb_B Type 1 interleukin-1 re 99.6 4E-16 1.4E-20 117.0 7.0 138 1-158 38-187 (315)
213 1dr9_A B7-1 (CD80), T lymphocy 99.6 2.4E-14 8.2E-19 100.6 15.7 123 35-163 64-194 (201)
214 3vh8_G Killer cell immunoglobu 99.6 4.6E-15 1.6E-19 111.5 12.4 113 35-156 173-294 (316)
215 2wqr_A IG epsilon chain C regi 99.6 6.4E-16 2.2E-20 116.6 7.6 121 36-157 178-307 (323)
216 1z7z_I Intercellular adhesion 99.6 2.7E-14 9.3E-19 112.2 16.5 113 35-156 49-164 (450)
217 1l6x_A Immunoglobulin gamma-1 99.6 1E-15 3.5E-20 108.4 7.4 119 38-156 70-194 (207)
218 3o4o_C Interleukin-1 receptor 99.6 6.5E-16 2.2E-20 117.1 6.8 129 23-157 171-322 (339)
219 3knb_A Titin; IG-like, titin, 99.6 6E-15 2.1E-19 92.3 10.0 83 72-158 5-87 (100)
220 3mjg_X Beta-type platelet-deri 99.6 6.4E-15 2.2E-19 109.1 11.8 121 45-167 150-278 (289)
221 3knb_B Obscurin-like protein 1 99.6 7.7E-15 2.6E-19 93.0 10.5 90 71-166 12-104 (107)
222 2w59_A IGY FCU3-4; immunoglobu 99.6 7.9E-15 2.7E-19 105.6 11.6 119 36-156 77-214 (231)
223 3v2a_R Vascular endothelial gr 99.6 4.9E-17 1.7E-21 135.5 0.0 129 34-170 623-759 (772)
224 1igt_B IGG2A intact antibody - 99.6 1.2E-14 4.2E-19 114.1 13.6 121 37-158 185-329 (444)
225 4f9p_D 103.2 anti-BTN3A1 antib 99.6 8.4E-14 2.9E-18 98.5 16.2 152 1-156 34-229 (254)
226 4f9l_D 20.1 anti-BTN3A1 antibo 99.6 2.8E-14 9.5E-19 101.5 13.4 152 1-154 33-230 (259)
227 4dkd_C Macrophage colony-stimu 99.6 1.5E-15 5.1E-20 112.6 7.1 126 34-167 49-181 (292)
228 1hxm_A Gamma-delta T-cell rece 99.6 2.9E-14 9.9E-19 102.5 13.5 147 1-156 35-196 (229)
229 1p6f_A NKP46, natural cytotoxi 99.6 2.9E-14 1E-18 103.4 13.3 122 34-167 58-191 (242)
230 2wqr_A IG epsilon chain C regi 99.6 2.6E-15 9.1E-20 113.2 8.0 127 37-166 73-211 (323)
231 3p3y_A Neurofascin; IG domains 99.6 4.2E-15 1.4E-19 115.0 9.3 122 37-167 172-311 (404)
232 3qs9_E FL cytokine receptor; i 99.6 2.7E-14 9.2E-19 114.6 13.0 126 40-169 195-325 (527)
233 2aty_A Complement receptor chi 99.6 3E-14 1E-18 109.8 12.1 121 36-156 233-359 (376)
234 2v5m_A Dscam; neurobiology SPL 99.6 4.2E-15 1.4E-19 114.5 7.1 133 22-167 155-306 (388)
235 2oz4_A Intercellular adhesion 99.6 9.3E-14 3.2E-18 101.8 13.1 102 37-156 57-164 (265)
236 1gsm_A Madcam-1, mucosal addre 99.6 7.1E-14 2.4E-18 98.6 11.8 120 35-156 58-191 (210)
237 3o3u_N Maltose-binding peripla 99.5 8.2E-14 2.8E-18 112.9 13.8 117 37-156 433-563 (581)
238 1iga_A IGA1; immunoglobulin; N 99.5 1.1E-13 3.9E-18 109.6 14.1 121 37-159 191-334 (475)
239 1zvo_C Myeloma immunoglobulin 99.5 9.2E-13 3.2E-17 105.4 18.3 76 82-157 307-384 (512)
240 1z7z_I Intercellular adhesion 99.5 1.7E-14 5.8E-19 113.4 7.7 105 35-158 326-437 (450)
241 3v2a_R Vascular endothelial gr 99.5 1.6E-14 5.4E-19 120.5 7.8 111 35-156 289-403 (772)
242 2c1o_A IGK-C protein; FAB frag 99.5 7.3E-14 2.5E-18 101.7 10.4 121 43-167 11-150 (254)
243 3f8u_B Tapasin; endoplasmic re 99.5 2.6E-13 9E-18 103.9 13.6 123 34-156 252-387 (401)
244 2oz4_A Intercellular adhesion 99.5 3.7E-14 1.3E-18 103.9 8.7 105 35-158 141-252 (265)
245 1za6_B IGG heavy chain; immuno 99.5 1.7E-14 5.8E-19 109.7 7.0 127 37-164 183-336 (344)
246 2cqv_A MLCK, myosin light chai 99.5 2.8E-13 9.4E-18 86.7 10.7 94 72-171 7-103 (114)
247 2kdg_A Myotilin; immonoglobuli 99.5 2.2E-13 7.5E-18 85.0 9.8 82 71-157 4-85 (100)
248 1ow0_A IG alpha-1 chain C regi 99.5 1.2E-14 4.3E-19 103.3 3.8 122 35-156 65-197 (214)
249 1g1c_A Immunoglobulin-like dom 99.5 7.4E-13 2.5E-17 82.4 11.1 82 72-158 5-86 (99)
250 1hzh_H IGG, immunoglobulin hea 99.5 7.7E-14 2.6E-18 110.0 7.7 118 38-156 316-440 (457)
251 3qp3_A Titin; I-SET IG-like, s 99.5 3.6E-13 1.2E-17 84.5 9.2 82 71-158 7-88 (103)
252 3mjg_X Beta-type platelet-deri 99.5 7.6E-13 2.6E-17 97.9 12.2 115 35-167 50-178 (289)
253 2yuz_A Myosin-binding protein 99.5 6.6E-13 2.3E-17 83.0 9.4 89 73-169 8-97 (100)
254 1u2h_A APEG-1, aortic preferen 99.5 1.7E-12 5.9E-17 80.7 11.3 81 72-157 5-85 (99)
255 1igy_B IGG1 intact antibody MA 99.4 1.7E-14 5.7E-19 113.1 1.2 121 37-158 181-319 (434)
256 2kkq_A Myotilin; unknown funct 99.4 1.4E-12 4.6E-17 83.8 9.9 95 71-169 14-111 (116)
257 3irg_A Titin; IG-like, titin, 99.4 1.7E-12 5.7E-17 80.8 10.0 82 73-158 6-87 (100)
258 3irg_B Obscurin-like protein 1 99.4 3E-12 1E-16 80.7 10.5 81 71-157 12-92 (107)
259 4acp_A IG gamma-1 chain C regi 99.4 2.4E-13 8.1E-18 98.4 5.9 120 37-156 90-215 (240)
260 1waa_A Titin; metal binding pr 99.4 2.9E-12 9.8E-17 78.9 9.9 78 72-156 5-82 (93)
261 1x44_A Myosin-binding protein 99.4 1.7E-12 5.7E-17 81.5 9.0 90 75-170 10-99 (103)
262 3puc_A Titin; I-SET IG-like do 99.4 5.9E-12 2E-16 78.2 11.5 80 72-157 6-85 (99)
263 3kvq_A Vascular endothelial gr 99.4 1.9E-13 6.4E-18 86.5 4.2 86 65-158 3-88 (108)
264 1fhg_A Telokin; immunoglobulin 99.4 1.9E-12 6.3E-17 87.3 9.4 98 66-168 35-135 (154)
265 2e7c_A Myosin-binding protein 99.4 5.2E-12 1.8E-16 81.2 10.8 82 79-167 31-115 (118)
266 2edj_A Roundabout homolog 2; K 99.4 3.5E-12 1.2E-16 79.5 9.6 87 72-166 8-97 (100)
267 2eys_A NKT15; natural killer T 99.4 1.6E-12 5.5E-17 92.1 8.9 139 1-156 35-186 (210)
268 2dm3_A KIAA0992 protein, palla 99.4 4.4E-13 1.5E-17 85.1 5.1 94 72-170 9-105 (110)
269 2yr3_A Myosin light chain kina 99.4 8.5E-13 2.9E-17 82.1 5.2 81 69-158 8-88 (99)
270 2lu7_A Obscurin-like protein 1 99.4 3.7E-12 1.3E-16 76.8 7.8 79 80-166 4-82 (84)
271 2e6p_A Obscurin-like protein 1 99.4 8.5E-12 2.9E-16 78.3 9.6 92 72-171 7-101 (104)
272 2edf_A Obscurin; beta-sandwich 99.3 3.7E-12 1.3E-16 79.8 7.9 91 72-170 8-98 (103)
273 1wit_A Twitchin 18TH IGSF modu 99.3 1.3E-12 4.3E-17 80.4 5.4 79 72-158 2-82 (93)
274 3rgv_A YAE62 TCR A chain; TCR, 99.3 3.6E-12 1.2E-16 89.3 8.3 112 1-117 32-154 (200)
275 3tjh_C 42F3 alpha; IG MHC, ant 99.3 4.5E-12 1.5E-16 90.2 8.7 112 1-117 41-167 (226)
276 2cry_A KIN of IRRE-like protei 99.3 1.5E-13 5.1E-18 89.0 0.9 97 63-161 5-104 (122)
277 2dm2_A Palladin; beta-sandwich 99.3 2.6E-12 9E-17 81.5 6.7 92 72-167 8-102 (110)
278 2edk_A Myosin-binding protein 99.3 1.3E-12 4.5E-17 81.6 4.9 88 73-166 9-98 (101)
279 3bfo_A Mucosa-associated lymph 99.3 1E-11 3.6E-16 76.0 8.8 68 76-158 7-74 (91)
280 2nw2_A ELS4 TCR alpha chain; T 99.3 8.7E-12 3E-16 87.7 9.4 139 1-156 31-180 (200)
281 1nct_A Titin; cell adhesion, g 99.3 3.5E-12 1.2E-16 80.5 6.3 79 73-157 15-93 (106)
282 2bk8_A Connectin, M1, titin he 99.3 4.2E-11 1.4E-15 74.1 11.0 76 78-159 7-83 (97)
283 3mtr_A N-CAM-1, NCAM-1, neural 99.3 7.4E-11 2.5E-15 83.6 13.7 90 77-170 23-115 (215)
284 1wwb_X Protein (brain derived 99.3 1.6E-11 5.5E-16 77.0 9.1 73 86-160 15-88 (103)
285 3cx2_A Myosin-binding protein 99.3 2.6E-11 8.8E-16 76.7 10.0 85 73-159 5-97 (108)
286 2lvc_A Obscurin-like protein 1 99.3 5.2E-12 1.8E-16 77.4 6.2 67 83-156 17-83 (91)
287 1wwc_A Protein (NT-3 growth fa 99.3 6.2E-12 2.1E-16 80.8 6.9 89 66-159 2-90 (118)
288 2a38_A Titin; Z1Z2, structural 99.3 6E-11 2.1E-15 82.4 12.3 82 72-157 5-86 (194)
289 3mbe_C I-AG7; T cell receptor, 99.3 6.6E-12 2.3E-16 89.6 7.2 111 1-116 32-154 (229)
290 2dlt_A Myosin binding protein 99.3 1.7E-11 5.8E-16 77.2 8.3 88 72-166 8-96 (106)
291 2eny_A Obscurin; beta-sandwich 99.3 3.5E-12 1.2E-16 80.2 5.1 89 74-168 10-98 (104)
292 2dav_A SLOW MYBP-C, myosin-bin 99.3 2.4E-11 8.2E-16 78.6 9.0 91 75-167 10-111 (126)
293 2cpc_A KIAA0657 protein; immun 99.3 3E-11 1E-15 76.9 9.5 92 70-169 8-102 (113)
294 1iam_A ICAM-1, CD54, intercell 99.3 2.2E-10 7.4E-15 79.2 14.0 115 33-156 47-164 (185)
295 3caf_A Fibroblast growth facto 99.3 9.9E-12 3.4E-16 77.3 6.7 73 80-158 16-89 (100)
296 2eo9_A Roundabout homolog 1; b 99.3 8.3E-12 2.8E-16 80.2 6.5 89 72-168 8-99 (118)
297 1he7_A High affinity nerve gro 99.3 2.3E-11 7.8E-16 78.6 8.1 72 86-159 14-88 (126)
298 3m45_A Cell adhesion molecule 99.3 6.4E-11 2.2E-15 74.5 10.1 83 71-156 5-93 (108)
299 3gsn_A RA14 TCR alpha chain (T 99.3 3.5E-12 1.2E-16 89.3 4.5 112 1-117 32-154 (199)
300 4ei6_A Valpha1 XV19 type II na 99.3 7.3E-12 2.5E-16 88.1 6.0 113 1-116 34-158 (208)
301 3so5_A LIG-3, leucine-rich rep 99.3 5.8E-11 2E-15 75.1 9.7 87 71-157 9-99 (112)
302 3lcy_A Titin; A-BAND, IG tande 99.3 1.4E-10 4.8E-15 80.6 12.5 81 71-157 6-86 (197)
303 2yuv_A Myosin-binding protein 99.3 7.3E-11 2.5E-15 73.4 9.8 88 72-167 7-95 (100)
304 2cr6_A KIAA1556 protein, obscu 99.3 4.6E-12 1.6E-16 81.1 4.3 97 66-168 6-103 (115)
305 2e6q_A Obscurin-like protein 1 99.2 5.4E-11 1.8E-15 75.5 9.1 91 73-169 9-107 (112)
306 1gxe_A Myosin binding protein 99.2 1.1E-11 3.7E-16 82.0 6.0 76 79-159 25-128 (139)
307 2c5d_C AXL oncogene, tyrosine- 99.2 2.3E-10 7.8E-15 79.7 13.2 96 72-169 2-107 (195)
308 2v9t_A Roundabout homolog 1; s 99.2 1.4E-11 4.7E-16 79.0 6.4 85 71-157 8-95 (117)
309 2ckn_A Basic fibroblast growth 99.2 9.6E-12 3.3E-16 76.8 5.2 74 74-158 11-84 (95)
310 2edh_A Obscurin; structural ge 99.2 2.4E-11 8.2E-16 77.4 7.1 98 61-167 7-105 (113)
311 3s35_X Vascular endothelial gr 99.2 3.6E-11 1.2E-15 77.6 7.9 89 79-167 15-110 (122)
312 3c6l_A TCR 2W20 alpha chain; T 98.9 9.7E-13 3.3E-17 91.3 0.0 109 1-115 32-151 (185)
313 2j8h_A Titin, connectin; cardi 99.2 4.6E-10 1.6E-14 78.1 13.6 92 72-167 4-98 (197)
314 2bnu_A TCR alpha chain, T-cell 99.2 7.1E-11 2.4E-15 83.2 9.3 100 1-102 32-145 (203)
315 1ymm_D T cell receptor alpha c 99.2 1.6E-12 5.4E-17 92.0 0.4 146 1-156 32-190 (207)
316 1rhf_A Tyrosine-protein kinase 99.2 4.8E-10 1.6E-14 77.1 12.9 91 75-169 5-99 (182)
317 2yd6_A PTPRD protein; hydrolas 99.2 8.5E-10 2.9E-14 77.9 14.2 92 71-167 5-100 (212)
318 2dku_A KIAA1556 protein; beta- 99.2 2.1E-10 7E-15 71.7 9.8 91 73-171 9-99 (103)
319 3qr2_A Basigin; CD147, EMMPRIN 99.2 7.5E-11 2.6E-15 77.7 7.9 88 70-159 19-115 (137)
320 2ens_A Advanced glycosylation 99.2 1.1E-11 3.9E-16 76.6 3.6 68 74-156 12-79 (96)
321 3mtr_A N-CAM-1, NCAM-1, neural 99.2 3.7E-10 1.3E-14 79.9 11.8 128 23-158 65-197 (215)
322 1oga_D T-cell receptor alpha c 99.2 1.3E-10 4.4E-15 82.6 9.1 100 1-102 32-142 (215)
323 2ak4_D SB27 T cell receptor al 99.2 1.7E-10 5.8E-15 81.8 9.3 146 1-156 36-195 (211)
324 1pd6_A Cardiac MYBP-C;, myosin 99.2 1.9E-10 6.4E-15 72.2 8.5 77 73-156 16-94 (104)
325 2k1m_A Myosin-binding protein 99.2 1.5E-10 5.3E-15 71.3 7.9 73 76-155 12-84 (95)
326 1gl4_B Basement membrane-speci 99.2 6.2E-11 2.1E-15 73.4 6.0 70 79-159 17-87 (98)
327 2vr9_A Roundabout 1, ROBO; imm 99.2 2.9E-10 1E-14 80.4 10.2 83 72-156 9-91 (217)
328 1vca_A VCAM-D1,2, human vascul 99.2 2E-09 6.8E-14 75.6 14.4 78 83-170 12-93 (202)
329 2edn_A Myosin-binding protein 99.1 7.1E-11 2.4E-15 75.5 5.9 82 75-158 15-104 (118)
330 2q86_A Valpha14 TCR; INKT cell 99.1 1.9E-10 6.6E-15 82.5 8.7 100 1-102 33-142 (229)
331 1kgc_D T-cell receptor alpha c 99.1 2.4E-10 8.2E-15 80.7 9.0 100 1-102 32-144 (206)
332 2yd1_A Tyrosine-protein phosph 99.1 2.7E-09 9.3E-14 75.2 14.5 94 71-168 5-103 (212)
333 1ntl_A CRRY-IG; immunology, co 99.1 1.1E-09 3.8E-14 88.4 13.5 120 37-156 409-534 (551)
334 1zox_A CLM-1; IG-superfamily, 99.1 2.2E-10 7.5E-15 72.9 7.6 73 1-73 34-112 (113)
335 2e7b_A Obscurin; IG-like domai 99.1 2.7E-10 9.1E-15 71.2 7.9 87 73-167 9-95 (103)
336 1epf_A NCAM, protein (neural c 99.1 2.9E-09 1E-13 73.6 13.9 80 74-157 4-85 (191)
337 3rbg_A Cytotoxic and regulator 99.1 3.3E-10 1.1E-14 73.4 8.3 86 79-167 8-101 (124)
338 1lp9_E T-cell receptor alpha c 99.1 1.5E-10 5.2E-15 80.9 6.8 100 1-102 33-146 (194)
339 2wv3_A Neuroplastin; igcam, me 99.1 2E-09 6.8E-14 74.6 12.1 82 78-168 8-92 (190)
340 3sgj_C Human FCG3A receptor; r 99.1 1.6E-09 5.4E-14 76.3 11.5 81 74-169 9-90 (204)
341 2dm7_A KIAA1556 protein; beta- 99.1 1.9E-10 6.6E-15 72.5 6.1 87 72-167 8-94 (108)
342 2nzi_A Titin; IG-domain, FNIII 99.1 2.2E-09 7.5E-14 79.7 12.8 92 72-167 4-98 (305)
343 4hwu_A Fibroblast growth facto 99.1 4E-10 1.4E-14 69.3 7.3 69 78-158 7-75 (95)
344 1gsm_A Madcam-1, mucosal addre 99.1 1.4E-09 4.7E-14 76.7 10.5 113 82-206 17-134 (210)
345 1fnl_A Low affinity immunoglob 99.1 3E-09 1E-13 72.8 12.0 79 73-166 8-87 (175)
346 2jll_A NCAM2, neural cell adhe 99.1 4.8E-09 1.6E-13 80.6 14.3 87 79-169 7-101 (389)
347 2cr3_A Basic fibroblast growth 99.1 6.5E-11 2.2E-15 73.6 3.1 69 79-158 10-78 (99)
348 3rrq_A Protein PD-1, programme 99.1 4.8E-10 1.7E-14 73.1 7.4 73 1-73 34-117 (129)
349 1mq8_A ICAM-1, intercellular a 99.1 1.4E-09 4.7E-14 80.7 10.6 112 36-156 50-164 (291)
350 2v5t_A NCAM2, N-CAM 2, neural 99.1 1E-09 3.6E-14 75.7 9.5 78 73-157 3-80 (189)
351 3bik_B Programmed cell death p 99.1 1.2E-09 4.1E-14 71.7 9.1 72 1-72 42-124 (134)
352 3p2t_A Leukocyte immunoglobuli 99.1 2.7E-09 9.4E-14 74.3 11.5 84 75-167 8-96 (196)
353 1f2q_A High affinity immunoglo 99.0 1.3E-09 4.4E-14 74.7 9.3 81 71-166 3-84 (176)
354 2iep_A Muscle-specific kinase 99.0 8.5E-10 2.9E-14 76.4 8.4 81 71-158 6-86 (192)
355 2eo1_A OBSCN protein, cDNA FLJ 99.0 5.2E-10 1.8E-14 69.7 6.5 78 81-166 20-97 (102)
356 3bp6_A Programmed cell death p 99.0 1.4E-09 4.8E-14 69.7 8.6 57 1-57 32-94 (117)
357 4acp_A IG gamma-1 chain C regi 99.0 1E-09 3.6E-14 79.2 8.7 109 49-158 1-113 (240)
358 4fa8_A Secreted protein BARF1; 99.0 2E-09 6.9E-14 75.8 9.9 82 81-166 2-104 (203)
359 2v44_A NCAM2, neural cell adhe 99.0 9E-09 3.1E-13 71.1 13.1 85 77-168 7-96 (189)
360 3qjh_A 5C.C7 alpha chain; immu 99.0 1.3E-09 4.4E-14 76.6 8.8 97 1-101 34-141 (205)
361 2nms_A CMRF35-like-molecule 1; 99.0 1.1E-09 3.6E-14 71.0 7.8 73 1-73 35-113 (124)
362 3qib_D 2B4 beta chain; IG doma 99.0 4E-09 1.4E-13 77.3 11.9 115 43-167 3-141 (270)
363 3b5h_A Cervical EMMPRIN, HAB18 99.0 1E-08 3.4E-13 70.5 13.2 78 82-170 8-85 (184)
364 4f80_A Butyrophilin subfamily 99.0 9.5E-09 3.2E-13 73.2 13.4 77 81-157 13-106 (226)
365 1jhl_L IGG1-kappa D11.15 FV (l 99.0 9.2E-09 3.1E-13 64.7 11.7 75 78-156 7-93 (108)
366 3ojm_B Fibroblast growth facto 99.0 2.8E-09 9.7E-14 75.8 10.4 84 80-168 27-113 (231)
367 3bn3_B ICAM-5, intercellular a 99.0 4.9E-09 1.7E-13 72.9 11.2 119 35-156 51-172 (196)
368 1smo_A Triggering receptor exp 99.0 1.2E-09 4E-14 70.2 7.3 71 1-71 33-115 (119)
369 2xt1_B Camelid VHH 9; viral pr 99.0 2.1E-09 7.2E-14 69.3 8.5 56 1-56 36-101 (121)
370 1q8m_A Triggering receptor exp 99.0 1.7E-09 5.7E-14 70.1 7.9 57 1-57 38-102 (127)
371 3k0w_A Mucosa-associated lymph 99.0 6.1E-09 2.1E-13 73.8 11.4 81 73-168 19-103 (218)
372 3r06_A Anti-mouse CD3epsilon a 99.0 1.9E-08 6.4E-13 70.8 13.8 86 77-166 6-107 (213)
373 2va4_A NCAM2, N-CAM 2, neural 99.0 3.8E-09 1.3E-13 73.0 10.1 79 81-167 13-94 (192)
374 1xed_A Polymeric-immunoglobuli 99.0 1.2E-09 4.3E-14 69.9 7.0 71 1-71 35-111 (117)
375 2q87_A CMRF35-H antigen; all-b 99.0 5.1E-10 1.8E-14 70.8 4.7 73 1-73 29-108 (110)
376 1u9k_A Triggering receptor exp 99.0 1.1E-09 3.8E-14 69.8 6.3 58 1-58 33-98 (114)
377 2gi7_A GPVI protein; IG-like d 99.0 1.1E-08 3.9E-13 70.5 11.8 77 73-167 9-90 (184)
378 1hkf_A NKP44, NK cell activati 99.0 3.9E-09 1.3E-13 68.1 8.7 70 1-70 44-120 (122)
379 3d9a_L Light chain of hyhel10 99.0 1.2E-08 4.1E-13 71.9 12.0 86 78-167 7-108 (213)
380 3bj9_1 Immunoglobulin IOTA cha 99.0 3.3E-09 1.1E-13 67.7 8.2 70 1-70 33-113 (116)
381 2v9r_A Roundabout homolog 1; p 99.0 3.8E-09 1.3E-13 74.2 9.3 94 72-167 9-109 (212)
382 3bp6_B Programmed cell death 1 99.0 1.2E-08 4.1E-13 71.3 11.5 87 80-168 10-104 (202)
383 1f97_A Junction adhesion molec 99.0 6.2E-09 2.1E-13 73.0 10.1 86 77-170 6-106 (212)
384 3d9a_H Heavy chain of hyhel10 99.0 2.6E-08 8.9E-13 70.1 13.3 89 79-167 7-113 (210)
385 3nfj_J T cell receptor beta ch 99.0 1.4E-08 4.7E-13 73.2 12.1 75 78-155 7-95 (245)
386 2yc1_A Single chain antibody f 99.0 3.1E-09 1.1E-13 68.0 7.7 58 1-58 34-101 (117)
387 2d7t_H Anti polyhydroxybutyrat 99.0 2.1E-09 7E-14 71.0 6.9 71 1-71 34-116 (139)
388 2ywz_A NEW antigen receptor va 98.9 1.5E-08 5.1E-13 64.2 10.7 78 78-155 6-87 (111)
389 2p45_B Antibody CAB-RN05; seMe 98.9 4.3E-09 1.5E-13 67.9 8.3 57 1-57 36-102 (123)
390 2q20_A VK1 O18/O8 germline lig 98.9 2.8E-08 9.4E-13 62.7 11.8 75 78-156 9-95 (109)
391 1sjv_A R9; camelids antibody, 98.9 2.1E-09 7.1E-14 68.5 6.6 57 1-57 34-99 (114)
392 3nl4_L Antigen binding fragmen 98.9 7.9E-08 2.7E-12 67.6 15.4 87 77-167 6-110 (213)
393 1neu_A Myelin P0 protein; stru 98.9 2.6E-09 8.8E-14 68.9 7.1 73 1-73 35-121 (124)
394 2frg_P TREM-like transcript-1; 98.9 4.2E-09 1.4E-13 66.2 7.8 57 1-59 30-91 (106)
395 1z9m_A GAPA225; nectin-like, I 98.9 3.9E-09 1.3E-13 70.1 8.1 90 76-168 42-139 (145)
396 1h5b_A Murine T cell receptor 98.9 9.3E-09 3.2E-13 65.3 9.5 76 78-156 7-93 (113)
397 1c1e_H Catalytic antibody 1E9 98.9 5E-08 1.7E-12 69.0 14.3 90 78-167 6-119 (219)
398 1op3_H FAB 2G12, heavy chain; 98.9 7.3E-08 2.5E-12 68.6 15.2 79 79-157 7-102 (225)
399 2h32_A Immunoglobulin IOTA cha 98.9 1.1E-09 3.9E-14 71.1 5.2 57 1-57 35-100 (126)
400 1xau_A B- and T-lymphocyte att 98.9 1.2E-08 4E-13 62.9 9.3 75 80-156 22-101 (122)
401 1dlf_H Anti-dansyl immunoglobu 98.9 3.7E-09 1.3E-13 68.4 7.6 58 1-58 34-103 (124)
402 1xiw_D Immunoglobulin heavy ch 98.9 3.4E-09 1.2E-13 68.4 7.3 57 1-57 34-100 (122)
403 3tpk_A Immunoglobulin heavy ch 98.9 6.1E-09 2.1E-13 68.5 8.6 57 1-57 38-104 (136)
404 3sbw_C Programmed cell death 1 98.9 3.3E-08 1.1E-12 69.9 13.2 90 79-168 8-116 (222)
405 3grw_A Fibroblast growth facto 98.9 8.9E-09 3E-13 73.8 10.3 83 80-167 23-108 (241)
406 3k1k_C Enhancer; nanobody, ant 98.9 2.9E-09 9.8E-14 68.8 6.8 57 1-57 36-102 (123)
407 3moq_A NEW antigen receptor va 98.9 2E-08 7E-13 65.0 10.9 80 77-156 5-88 (126)
408 3s96_B 3B5H10 FAB light chain; 98.9 5E-08 1.7E-12 68.8 13.9 84 81-168 9-117 (218)
409 3knb_B Obscurin-like protein 1 98.9 2.3E-09 7.8E-14 67.5 6.2 62 1-73 45-107 (107)
410 4dzb_B Vbeta2 (MAIT T cell rec 98.9 2.4E-08 8.3E-13 71.9 12.4 88 77-167 6-117 (246)
411 2qhl_A Novel immune-type recep 98.9 6.4E-09 2.2E-13 65.9 8.3 56 1-58 32-98 (111)
412 3k74_B Nanobody; immunoglobuli 98.9 2.7E-09 9.2E-14 68.1 6.5 57 1-57 32-98 (115)
413 1yc7_A Anti-VSG immunoglobulin 98.9 2.8E-09 9.6E-14 69.0 6.7 58 1-58 34-100 (124)
414 3bia_X T-cell immunoglobulin a 98.9 3.2E-09 1.1E-13 67.8 6.8 73 1-73 30-113 (116)
415 3khq_A B-cell antigen receptor 98.9 2.4E-09 8.1E-14 70.2 6.3 69 1-74 47-120 (133)
416 1mju_H Immunoglobulin MS6-12; 98.9 6.2E-08 2.1E-12 69.1 14.3 90 78-167 6-116 (227)
417 1pz5_B Heavy chain of FAB (SYA 98.9 7.5E-08 2.6E-12 68.2 14.7 89 79-167 7-120 (220)
418 1zox_A CLM-1; IG-superfamily, 98.9 3.6E-08 1.2E-12 62.5 11.7 78 78-156 7-96 (113)
419 3m8o_H Immunoglobulin A1 heavy 98.9 1.3E-07 4.3E-12 67.1 15.8 88 79-166 7-118 (221)
420 1kxv_C Camelid VHH domain CAB1 98.9 2.7E-09 9.3E-14 68.7 6.4 58 1-58 34-100 (121)
421 1h5b_A Murine T cell receptor 98.9 6.6E-09 2.3E-13 66.0 8.1 58 1-58 32-93 (113)
422 1mfa_H IGG1-lambda Se155-4 FAB 98.9 3.4E-09 1.2E-13 68.1 6.8 58 1-58 34-101 (120)
423 3khq_A B-cell antigen receptor 98.9 2.1E-08 7.2E-13 65.6 10.7 86 76-167 21-117 (133)
424 1oll_A NK receptor; immune sys 98.9 3.5E-08 1.2E-12 68.3 12.4 84 75-167 7-95 (188)
425 3k3q_A Llama AA1 VHH domain; l 98.9 9E-09 3.1E-13 68.8 9.0 57 1-57 48-114 (151)
426 3rbs_A Myomesin-1; immunoglobu 98.9 4.6E-09 1.6E-13 74.1 7.9 73 80-156 10-83 (207)
427 3ry4_A Low affinity immunoglob 98.9 1.9E-08 6.4E-13 68.3 10.7 77 77-168 9-86 (170)
428 4fmk_A Poliovirus receptor-rel 98.9 1.7E-08 5.8E-13 71.1 10.8 79 79-157 8-106 (225)
429 2e27_L Anti-ciguatoxin antibod 98.9 4.3E-08 1.5E-12 62.8 11.7 75 78-156 9-95 (119)
430 3r0m_A Llama VHH A12; IG domai 98.9 6.9E-09 2.4E-13 68.7 8.1 57 1-57 34-100 (143)
431 2d3v_A Leukocyte immunoglobuli 98.9 7.9E-09 2.7E-13 72.0 8.9 86 73-167 6-96 (196)
432 2coq_A NEW antigen receptor va 98.9 1.6E-08 5.5E-13 63.7 9.5 78 78-155 6-87 (108)
433 1kxt_B Immunoglobulin VHH frag 98.9 3.8E-09 1.3E-13 68.7 6.6 58 1-58 34-100 (127)
434 1lk3_L 9D7 light chain; antige 98.9 4E-08 1.4E-12 69.0 12.5 85 79-167 7-107 (210)
435 3b9v_A Heavy chain variable do 98.9 3.2E-09 1.1E-13 68.2 6.2 58 1-58 34-101 (120)
436 3rrq_A Protein PD-1, programme 98.9 5.1E-08 1.8E-12 63.4 11.9 93 77-170 6-118 (129)
437 1tvd_A T cell receptor, ES204 98.9 3E-09 1E-13 67.9 5.9 57 1-57 33-97 (116)
438 1a2y_B IGG1-kappa D1.3 FV (hea 98.9 2.4E-09 8.1E-14 68.5 5.4 58 1-58 34-100 (116)
439 2oi9_C V beta, T cell receptor 98.9 1E-08 3.4E-13 66.0 8.4 57 1-58 32-96 (121)
440 1rjc_A 1D2L19, camelid heavy c 98.9 4.5E-09 1.5E-13 69.2 6.9 58 1-58 34-101 (137)
441 2or8_A Hepatitis A virus cellu 98.9 2.6E-09 9E-14 68.0 5.6 73 1-73 30-111 (116)
442 1zvh_A Immunoglobulin heavy ch 98.9 3.3E-09 1.1E-13 69.6 6.2 58 1-58 34-101 (134)
443 3mj8_L Stimulatory hamster ant 98.9 3E-08 1E-12 69.8 11.6 83 81-167 9-109 (213)
444 2wzp_D Camelid VHH5; baseplate 98.9 3.6E-09 1.2E-13 68.3 6.2 58 1-58 34-101 (123)
445 1sq2_N Novel antigen receptor; 98.9 2.5E-08 8.4E-13 63.4 10.0 79 78-156 6-88 (113)
446 2vyr_E Human single domain ant 98.9 4.2E-09 1.4E-13 70.7 6.6 57 1-57 34-100 (153)
447 2coq_A NEW antigen receptor va 98.9 6.6E-09 2.2E-13 65.5 7.2 54 1-57 34-87 (108)
448 2yuz_A Myosin-binding protein 98.9 5E-09 1.7E-13 65.1 6.5 62 1-74 37-98 (100)
449 1hxm_B Gamma-delta T-cell rece 98.9 2.7E-07 9.1E-12 66.4 16.6 90 78-167 7-123 (242)
450 1n4x_H Immunoglobulin heavy ch 98.9 4E-09 1.4E-13 67.8 6.2 58 1-58 34-101 (120)
451 1zvy_A Immunoglobulin heavy ch 98.9 3.6E-09 1.2E-13 69.6 6.0 58 1-58 34-101 (136)
452 3nl4_H Antigen binding fragmen 98.9 8.1E-08 2.8E-12 67.8 13.5 87 78-166 5-114 (215)
453 1j05_H T84.66 antibody, anti-C 98.9 4.3E-09 1.5E-13 67.8 6.3 58 1-58 34-101 (121)
454 3k81_A Single strand antibody 98.9 5.7E-09 2E-13 67.7 6.7 57 1-57 34-99 (127)
455 2x1q_A Gelsolin nanobody; cont 98.9 3.6E-09 1.2E-13 68.7 5.8 58 1-58 34-101 (127)
456 2ifg_A High affinity nerve gro 98.9 7.2E-10 2.5E-14 84.3 2.8 99 47-156 136-235 (347)
457 1q9r_B S25-2 FAB (IGG1K) heavy 98.9 1.4E-07 4.7E-12 66.9 14.6 79 79-157 7-104 (222)
458 3q0h_A T cell immunoreceptor w 98.9 1.1E-08 3.8E-13 65.4 8.0 89 77-170 8-111 (117)
459 2fbj_H IGA-kappa J539 FAB (hea 98.9 1.6E-07 5.3E-12 66.7 14.8 89 79-167 7-118 (220)
460 1fo0_A Protein (BM3.3 T cell r 98.9 3.4E-09 1.2E-13 67.7 5.6 57 1-57 33-95 (116)
461 1c5d_H Monoclonal antibody aga 98.9 9.8E-08 3.3E-12 67.5 13.7 89 79-167 7-117 (215)
462 4gjt_B Poliovirus receptor-rel 98.9 7E-09 2.4E-13 67.0 7.0 71 1-71 35-117 (123)
463 2vsd_A CHIR AB1; immune system 98.9 1.1E-08 3.9E-13 64.1 7.7 64 83-156 15-78 (105)
464 1mqk_H Antibody 7E2 FV fragmen 98.9 3.9E-09 1.3E-13 68.6 5.7 58 1-58 34-101 (127)
465 1mqk_L Antibody 7E2 FV fragmen 98.9 3.8E-08 1.3E-12 63.2 10.4 75 78-156 7-93 (120)
466 3eak_A NBBCII10-FGLA; antibody 98.9 4E-09 1.4E-13 69.4 5.8 57 1-57 37-103 (137)
467 3m45_A Cell adhesion molecule 98.9 1E-08 3.5E-13 64.2 7.5 52 21-73 57-108 (108)
468 1nkr_A P58-CL42 KIR; inhibitor 98.9 5.8E-08 2E-12 67.9 12.1 88 73-167 9-104 (201)
469 3moq_A NEW antigen receptor va 98.9 6.7E-09 2.3E-13 67.3 6.7 54 1-57 34-87 (126)
470 3bdb_A Novel immune-type recep 98.9 1.9E-08 6.4E-13 66.2 8.9 69 1-71 32-113 (137)
471 1i8k_A Epidermal growth factor 98.9 3.8E-08 1.3E-12 61.8 10.0 75 78-156 7-93 (107)
472 3iy0_H FAB 14, heavy domain; c 98.9 5.9E-09 2E-13 67.0 6.3 57 1-57 34-100 (120)
473 1sq2_N Novel antigen receptor; 98.9 9E-09 3.1E-13 65.4 7.1 54 1-57 34-87 (113)
474 1jtp_A Single-domain antibody; 98.8 8.4E-09 2.9E-13 68.8 7.2 57 1-57 34-100 (148)
475 1qfw_M FV, antibody (anti beta 98.8 2.1E-08 7.2E-13 63.1 8.7 75 78-156 7-93 (108)
476 1q0x_L FAB 9B1, light chain; a 98.8 5.5E-08 1.9E-12 68.4 11.8 86 79-166 7-109 (212)
477 3r08_E T-cell surface glycopro 98.8 6.1E-10 2.1E-14 66.2 1.4 60 79-155 6-66 (82)
478 1dee_B IGM RF 2A2; FAB-IBP com 98.8 1.7E-07 5.7E-12 66.7 14.4 78 79-156 7-101 (223)
479 2xqy_G A13-D6.3 monoclonal ant 98.8 2.1E-07 7.2E-12 67.9 15.2 90 78-167 12-124 (261)
480 1i3u_A Antibody VHH LAMA domai 98.8 5.4E-09 1.8E-13 67.9 6.0 58 1-58 34-106 (127)
481 4frw_A Poliovirus receptor-rel 98.8 3.7E-08 1.3E-12 69.1 10.8 79 78-156 5-101 (218)
482 3nn8_A Engineered SCFV, heavy 98.8 7.8E-09 2.7E-13 66.7 6.7 57 1-57 36-101 (122)
483 3dmm_C T-cell surface glycopro 98.8 1.6E-08 5.4E-13 68.6 8.4 58 1-59 41-113 (166)
484 3bae_H WO2 IGG2A FAB fragment 98.8 1.6E-07 5.3E-12 67.0 14.2 79 79-157 7-103 (228)
485 1nbq_A JAM, junctional adhesio 98.8 5.3E-09 1.8E-13 73.2 6.4 86 77-170 9-109 (209)
486 3juy_B 3B3 single chain varian 98.8 1.1E-07 3.7E-12 69.0 13.4 84 73-156 7-107 (256)
487 3sob_L Antibody light chain; b 98.8 1.2E-07 4E-12 67.7 13.3 87 77-167 29-131 (237)
488 2z35_A T-cell receptor alpha-c 98.8 8.2E-09 2.8E-13 65.5 6.4 56 1-56 32-92 (112)
489 3jz7_A MCAR, CAR, coxsackievir 98.8 2.4E-08 8.1E-13 70.0 9.5 92 80-171 8-124 (214)
490 2v5y_A Receptor-type tyrosine- 98.8 1.5E-07 5.1E-12 78.4 15.7 88 78-171 170-264 (731)
491 3cx5_J Heavy chain (VH) of FV- 98.8 5E-09 1.7E-13 68.1 5.4 57 1-57 35-100 (127)
492 3g9a_B Minimizer; antibody com 98.8 5.5E-09 1.9E-13 68.8 5.7 58 1-58 36-102 (139)
493 2atp_B T-cell surface glycopro 98.8 1.2E-08 4.1E-13 65.0 7.2 57 1-57 31-100 (115)
494 2fbo_J V1V2;, variable region- 98.8 1.2E-08 4E-13 73.5 8.0 85 79-168 9-132 (250)
495 3gkz_A Anti-methamphetamine si 98.8 1.6E-07 5.3E-12 68.2 13.9 91 78-168 14-127 (257)
496 3udw_C Poliovirus receptor; PV 98.8 9.5E-09 3.3E-13 65.4 6.6 78 78-155 6-100 (118)
497 3uto_A Twitchin; kinase, muscl 98.8 3.2E-08 1.1E-12 80.1 11.1 81 73-159 483-563 (573)
498 2oyp_A Hepatitis A virus cellu 98.8 7.1E-09 2.4E-13 65.1 5.9 75 82-156 4-94 (109)
499 2zg1_A Sialic acid-binding IG- 98.8 3.3E-08 1.1E-12 69.6 9.9 93 77-169 5-124 (214)
500 2vol_A Murine IGG FC; FC, zinc 98.8 2.3E-08 7.8E-13 70.4 9.0 75 84-158 15-92 (207)
No 1
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.91 E-value=3.1e-23 Score=146.88 Aligned_cols=138 Identities=18% Similarity=0.217 Sum_probs=99.6
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCC
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPD 101 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 101 (207)
+++.+... .+.++|.|.+++.+|+|.|+|.+.|. +.....+.|.|..||.+...+....+..|+.+.|.|.+.|.|.
T Consensus 58 ~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~ 135 (203)
T 4fa8_A 58 GFFDIHRS--ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPH 135 (203)
T ss_dssp TTEEEEEE--TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESC
T ss_pred ceEEEEEc--CCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCC
Confidence 44554433 35679999999999999999999884 4467778899988887777777777889999999999999998
Q ss_pred CCcEEEEEeCCEEEEe--cCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCeEEEEEe
Q psy3475 102 PPSFIYWYRGANVVNY--SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHVL 166 (207)
Q Consensus 102 ~~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~~~~~v~ 166 (207)
| .+.|++++..+.. ....++.... ......+.+.++..+|+|.|+|.|.|..+....+.+.
T Consensus 136 P--~v~W~~~~~~~~~~~~~~~r~~~~~--~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v~vs 198 (203)
T 4fa8_A 136 P--HVQWLMPEGVEPAPTAANGGVMKEK--DGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYVS 198 (203)
T ss_dssp C--EEEECCC------------CCEECT--TSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEEEEE
T ss_pred C--EEEEEECCeeecCcccccceEEEeC--CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEE
Confidence 8 8999886654432 1222233222 2234556778899999999999999997766555443
No 2
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.86 E-value=4.2e-20 Score=135.15 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=113.2
Q ss_pred CeeEEccCCccceeeEEEE----------eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC----C-ceeeeE
Q psy3475 1 VSWIRKRDLHILTVGILTY----------TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE----P-KISIGY 65 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~----~-~~~~~~ 65 (207)
|.|||+.++..+....... ...+||.+..+...+.++|.|.+++.+|+|.|+|.+.+. . ......
T Consensus 36 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~ 115 (256)
T 3umt_A 36 MHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGT 115 (256)
T ss_dssp EEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCE
T ss_pred EEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCE
Confidence 5899988766554443322 125788887766667888999999999999999999864 1 134556
Q ss_pred EEEEEe----------------ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEEE---ec------
Q psy3475 66 KLNVVI----------------SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVVN---YS------ 118 (207)
Q Consensus 66 ~l~v~~----------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~~---~~------ 118 (207)
.|.|.. ++.+...+....+..|+.++|.|.+.+.+.+ .+.|++. +.... ..
T Consensus 116 ~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~ 193 (256)
T 3umt_A 116 TVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS--NLNWLQQKPDGTIKRLIYATSSLDS 193 (256)
T ss_dssp EEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTCCEEEEEETTTEECT
T ss_pred EEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc--EEEEEEECCCCCcEEEEEeccccCC
Confidence 777764 4445555667888899999999999997766 8999983 22111 10
Q ss_pred -CCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC----CCCeEEEEEec
Q psy3475 119 -QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS----DGASVVVHVLN 167 (207)
Q Consensus 119 -~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~----~~~~~~~~v~~ 167 (207)
...++.... ......|.|.+++.+|+|.|+|.+.|. .+....|.|..
T Consensus 194 ~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~ 245 (256)
T 3umt_A 194 GVPKRFSGSR--SGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKR 245 (256)
T ss_dssp TSCTTEEEEE--ETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred ccCCCEEEec--CCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEEC
Confidence 112333222 224567999999999999999999986 23445555554
No 3
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.85 E-value=6.2e-20 Score=130.30 Aligned_cols=130 Identities=15% Similarity=0.241 Sum_probs=92.5
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEE---------------------eccceEecCc
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVV---------------------ISKAKIIGNS 80 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~---------------------~~~~~~~~~~ 80 (207)
+.++.+..+...+..+|.|.+++.+|+|.|+|.+.| +.......+.+. .+|.+....
T Consensus 47 ~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N-g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~- 124 (207)
T 3rbs_A 47 GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD-GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL- 124 (207)
T ss_dssp SSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE-TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-
T ss_pred CCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC-CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-
Confidence 445554444444667899999999999999999988 444333333221 123333222
Q ss_pred ceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 81 ELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
...+..|+.+.|.|.+.+. |.| .+.|++++..+..+.+.. . ......|.|.++..+|+|.|+|.|.|..+.
T Consensus 125 ~~~v~~g~~v~l~C~v~g~~P~p--~i~W~k~g~~l~~~~~~~--~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 196 (207)
T 3rbs_A 125 SWEVTGECNVLLKCKVANIKKET--HIVWYKDEREISVDEKHD--F----KDGICTLLITEFSKKDAGIYEVILKDDRGK 196 (207)
T ss_dssp EEEEETTTEEEEEEEEESCCTTC--EEEEEETTEEECCCCCCC--C----SSEEEEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred CcEEcCCCcEEEEEEEeCCCCCC--EEEEEECCEECCCCCceE--c----CCCEEEEEECCCCcccCEEEEEEEEcCCCE
Confidence 4667899999999999998 777 899999999886543311 0 123457999999999999999999998554
Q ss_pred eE
Q psy3475 160 SV 161 (207)
Q Consensus 160 ~~ 161 (207)
..
T Consensus 197 ~~ 198 (207)
T 3rbs_A 197 DK 198 (207)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 4
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.85 E-value=2.8e-19 Score=127.17 Aligned_cols=131 Identities=25% Similarity=0.410 Sum_probs=96.0
Q ss_pred CcEEEEEccc-CCCCCeEEEEEEecC-CceeeeEEEEEEec-------cceEecCcceEEecCCcEEEEEEEeeCCCCCc
Q psy3475 34 DEWTLKIASS-QLRDSGTYECQVSTE-PKISIGYKLNVVIS-------KAKIIGNSELYIKSGSDINLTCVVLETPDPPS 104 (207)
Q Consensus 34 ~~~~L~i~~~-~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~-------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 104 (207)
....|.|.++ +.+|+|.|+|.+.+. +.....+.|.|..+ |.+...+....+..|+.+.|.|.+.+.|.+
T Consensus 61 ~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-- 138 (212)
T 2yd6_A 61 SGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP-- 138 (212)
T ss_dssp TEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCC--
T ss_pred CceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCC--
Confidence 3567999999 599999999999974 34566778888764 334445666778889999999999998877
Q ss_pred EEEEEeCCEEEEecC-CCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC----CCeEEEEEecC
Q psy3475 105 FIYWYRGANVVNYSQ-RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD----GASVVVHVLNG 168 (207)
Q Consensus 105 ~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~----~~~~~~~v~~~ 168 (207)
.+.|++++..+.... ..++..... .....|.|.++..+|.|.|+|.|.|.. +..+.+.+...
T Consensus 139 ~v~W~~~g~~l~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~ 205 (212)
T 2yd6_A 139 EITWFKDFLPVDTSNNNGRIKQLRS--ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT 205 (212)
T ss_dssp EEEEEETTEEC------CCEEEEEE--TTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred eEEEEECCccccCcCCCceEEEEec--CCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEec
Confidence 899999999886542 223333321 245789999999999999999999983 33455555543
No 5
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.85 E-value=9.3e-20 Score=133.47 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=108.0
Q ss_pred CeeEEccCCccceeeEEEE----------eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc------eeee
Q psy3475 1 VSWIRKRDLHILTVGILTY----------TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK------ISIG 64 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~ 64 (207)
|.|||+.++..+....... ..++|+.+..+...+.++|.|.+++.+|+|.|+|.+.+... ....
T Consensus 34 v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~ 113 (256)
T 1nqb_A 34 MHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQG 113 (256)
T ss_dssp EEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCC
T ss_pred EEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCc
Confidence 5899986554333222211 12578888776556778999999999999999999987421 2345
Q ss_pred EEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCC---cEEEEEe--CCEEEE---ec-------CCCceEEEEec
Q psy3475 65 YKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPP---SFIYWYR--GANVVN---YS-------QRGGISVVTEK 129 (207)
Q Consensus 65 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~---~~~~W~~--~~~~~~---~~-------~~~~~~~~~~~ 129 (207)
+.|.|..++.+...+....+..|+.++|.|.+.+.+.+. ..+.|++ ++..+. .. ...++....
T Consensus 114 ~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-- 191 (256)
T 1nqb_A 114 TTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSG-- 191 (256)
T ss_dssp EEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--
T ss_pred eeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEc--
Confidence 677777766665667777889999999999999876541 2789998 554332 10 112333222
Q ss_pred ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 130 QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 130 ~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
......|.|.+++.+|+|.|+|.+.|.
T Consensus 192 ~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 218 (256)
T 1nqb_A 192 SGTDFTLKISRVEAEDLGVYYCFQGSH 218 (256)
T ss_dssp ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred cCCEEEEEECCCChHHCEEEEEEEccC
Confidence 224568999999999999999999985
No 6
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.85 E-value=8e-20 Score=127.49 Aligned_cols=142 Identities=20% Similarity=0.316 Sum_probs=105.1
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-c-eeeeEEEEEEeccceEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-K-ISIGYKLNVVISKAKIIG 78 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~-~~~~~~l~v~~~~~~~~~ 78 (207)
|.|||.++... ..+.++.+..++ ...+|.|.+++.+|+|.|+|.+.+.. . ....+.|.|..+|.+...
T Consensus 33 v~W~~~~~~~~--------~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~v~~~p~~~~~ 102 (189)
T 2v44_A 33 IDWYNPQGEKI--------ISTQRVVVQKEG--VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV 102 (189)
T ss_dssp EEEECTTSCBC--------CCCSSEEEEEET--TEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCCEEESC
T ss_pred EEEEeCCCCcc--------CCCceEEEECCC--CeEEEEEccCCcccCeEEEEEEEeCCCCcEEEEEEEEEecCCceeec
Confidence 47888433221 224566655433 35689999999999999999999743 3 356778888888776666
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+....+..|+.+.|.|.+.+.|.| .+.|++++..+......++... ....|.|.++..+|.|.|+|.|.|..+
T Consensus 103 ~~~~~~~~g~~~~l~C~~~g~p~p--~v~W~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 175 (189)
T 2v44_A 103 VSPQEFKQGEDAEVVCRVSSSPAP--AVSWLYHNEEVTTISDNRFAML-----ANNNLQILNINKSDEGIYRCEGRVEAR 175 (189)
T ss_dssp CCSEEEETTSCEEECCEEECSSCC--EEEEEEEC--CEECCCTTEEEC-----TTSCEEETTCCGGGCEEEEEEEEETTT
T ss_pred CCcEEEeCCCCEEEEEEECcCCCC--cEEEEECCcEEeccCCCCEEEe-----cCCcEEEEEcCcccCeEEEEEEEcccc
Confidence 667788899999999999998877 8999999888765433333322 234799999999999999999999854
Q ss_pred C
Q psy3475 159 A 159 (207)
Q Consensus 159 ~ 159 (207)
.
T Consensus 176 ~ 176 (189)
T 2v44_A 176 G 176 (189)
T ss_dssp T
T ss_pred C
Confidence 3
No 7
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.85 E-value=8.5e-20 Score=132.72 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=105.7
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-Cc--eeeeEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PK--ISIGYKL 67 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~--~~~~~~l 67 (207)
|.|||+..+..+....+... ..+|+.+..+...+.++|.|.+++.+|+|.|+|.+.+. .. ......|
T Consensus 36 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l 115 (247)
T 2ghw_B 36 MHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLV 115 (247)
T ss_dssp EEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEE
T ss_pred EEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEE
Confidence 57999876544443332221 24788887765567889999999999999999999875 11 2344577
Q ss_pred EEEec---------------cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe--CCEEEEe----------cCC
Q psy3475 68 NVVIS---------------KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR--GANVVNY----------SQR 120 (207)
Q Consensus 68 ~v~~~---------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~--~~~~~~~----------~~~ 120 (207)
.|..+ +.+...+....+..|+.+.|.|.+.+.+.+ .+.|++ ++..+.. ...
T Consensus 116 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~g~~~~~~~~~~~~~~~~~~ 193 (247)
T 2ghw_B 116 TVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRS--NLAWYQQKPGQAPRPLIYDASTRATGIP 193 (247)
T ss_dssp EECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCC
T ss_pred EEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccc--eEEEEEECCCCCcEEEEEEeccCCCccC
Confidence 77643 223334556778899999999999998777 899998 4543211 011
Q ss_pred CceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 121 GGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 121 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.++.... ......|.|.+++.+|+|.|+|.+.|.
T Consensus 194 ~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 227 (247)
T 2ghw_B 194 DRFSGSG--SGTDFTLTISRLEPEDFAVYYCQQRSN 227 (247)
T ss_dssp TTEEEEC--SSSEEEEEECSCCGGGCEEEEEEECSS
T ss_pred CCEEEec--CCCeEEEEECcCCHHHCEEEEEEEccC
Confidence 2233221 224567999999999999999999985
No 8
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.6e-19 Score=132.03 Aligned_cols=152 Identities=15% Similarity=0.161 Sum_probs=108.2
Q ss_pred CeeEEccCCccceeeEEEE-e---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC------------
Q psy3475 1 VSWIRKRDLHILTVGILTY-T---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE------------ 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~------------ 58 (207)
|.|||+.++..+....... . ..+|+.+..+...+.++|.|.+++.+|+|.|.|.+.+.
T Consensus 40 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~ 119 (256)
T 3juy_B 40 VHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYY 119 (256)
T ss_dssp EEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCS
T ss_pred EEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCCCcccCEEEEEeEEeccccccccccccc
Confidence 5899988766555444433 1 14789988777677889999999999999999999874
Q ss_pred C-ceeeeEEEEEEec---------------cceEecCcceEEecCCcEEEEEEEeeCCC-CCcEEEEEeC--CEEEE---
Q psy3475 59 P-KISIGYKLNVVIS---------------KAKIIGNSELYIKSGSDINLTCVVLETPD-PPSFIYWYRG--ANVVN--- 116 (207)
Q Consensus 59 ~-~~~~~~~l~v~~~---------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~~W~~~--~~~~~--- 116 (207)
. .......|.|..+ +.+...+....+..|+.++|.|.+.+.+. + .+.|++. +....
T Consensus 120 ~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~--~v~W~k~~~~~~~~~~~ 197 (256)
T 3juy_B 120 MDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSCRSSHSIRSR--RVAWYQHKPGQAPRLVI 197 (256)
T ss_dssp CCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEEEESSCCTTC--CEEEEEECTTSCCEEEE
T ss_pred eeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEEEECCCcCCe--eEEEEEECCCCCcEEEE
Confidence 1 1344567777663 34455577788899999999999998765 4 7999872 22111
Q ss_pred ec-------CCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 117 YS-------QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 117 ~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.. ...++.... ......|.|.+++.+|+|.|+|.+.|.
T Consensus 198 ~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 242 (256)
T 3juy_B 198 HGVSNRASGISDRFSGSG--SGTDFTLTITRVEPEDFALYYCQVYGA 242 (256)
T ss_dssp ETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECCS
T ss_pred EecCccCCccCCcEEEEc--cCCEEEEEECCCCHhHCEEEEEEEeeC
Confidence 10 112333322 224567999999999999999999986
No 9
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.85 E-value=7.9e-20 Score=133.48 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=112.5
Q ss_pred CeeEEccCCccceeeEEEE----------eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTY----------TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~ 68 (207)
|.|||+.++..+....... ..++|+.+..+...+.++|.|.+++.+|+|.|+|.+.+... ......|.
T Consensus 35 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~ 114 (253)
T 3uzq_A 35 MSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVT 114 (253)
T ss_dssp EEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEE
T ss_pred EEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEE
Confidence 5899987766555443332 12478888877777788999999999999999999987332 23556777
Q ss_pred EEe---------------ccceEecCcceEEecCCcEEEEEEEeeCCCCC--cEEEEEeC--CEE---EEec-------C
Q psy3475 69 VVI---------------SKAKIIGNSELYIKSGSDINLTCVVLETPDPP--SFIYWYRG--ANV---VNYS-------Q 119 (207)
Q Consensus 69 v~~---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~~~~W~~~--~~~---~~~~-------~ 119 (207)
|.. ++.+...+....+..|+.++|.|.+.+.+.+. ..+.|+++ +.. +... .
T Consensus 115 V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~ 194 (253)
T 3uzq_A 115 VSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGI 194 (253)
T ss_dssp ECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTC
T ss_pred EecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCcc
Confidence 764 34444556678889999999999998865431 26899983 221 1111 1
Q ss_pred CCceEEEEecccceEEEEEEecccCCCeEEEEEeecC----CCCeEEEEEec
Q psy3475 120 RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS----DGASVVVHVLN 167 (207)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~----~~~~~~~~v~~ 167 (207)
..++.... ......|.|.+++.+|+|.|+|.+.|. .+....|.|..
T Consensus 195 ~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~ 244 (253)
T 3uzq_A 195 PARFSGSG--SRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKR 244 (253)
T ss_dssp CTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred CCceEEeC--CCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcC
Confidence 12333221 224567999999999999999999986 34445555553
No 10
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.85 E-value=1.1e-20 Score=134.48 Aligned_cols=155 Identities=14% Similarity=0.196 Sum_probs=104.4
Q ss_pred CeeEEccCCccceeeEEEEe-----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc----eeeeEEEEEE-
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK----ISIGYKLNVV- 70 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~- 70 (207)
|.|||+.++..+....+... .++|+.+.. ..+.++|.|.+++.+|+|.|+|.+.+... ....+.|.|.
T Consensus 32 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~ 109 (213)
T 3mj8_L 32 VHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN--SGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLG 109 (213)
T ss_dssp EEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEEC
T ss_pred EEEEEECCCCCcEEEEEECCccCCCccCcEEEEe--cCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeC
Confidence 57999765544332211100 246777654 33577899999999999999999987432 4566788887
Q ss_pred ---eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEecccCCC
Q psy3475 71 ---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDS 146 (207)
Q Consensus 71 ---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~ 146 (207)
.+|.+...+....+..|+.+.|.|.+.+.+++...+.|+++|..+............++ ....+.|.|..+..+|.
T Consensus 110 ~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~ 189 (213)
T 3mj8_L 110 QPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSR 189 (213)
T ss_dssp SCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSC
T ss_pred CCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCC
Confidence 45555444444444579999999999987444348999999998754211000000111 11235699999999999
Q ss_pred eEEEEEeecCC
Q psy3475 147 GNYTCAPSSSD 157 (207)
Q Consensus 147 g~Y~C~~~n~~ 157 (207)
|.|+|.|.|..
T Consensus 190 G~Y~C~a~n~~ 200 (213)
T 3mj8_L 190 NTFICKVTHGG 200 (213)
T ss_dssp SCEEEEEEETT
T ss_pred CEEEEEEEECC
Confidence 99999999973
No 11
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.85 E-value=2.1e-19 Score=138.60 Aligned_cols=151 Identities=24% Similarity=0.384 Sum_probs=111.6
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGN 79 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~ 79 (207)
|.|+|..++..+... ....++|+.+..+ .+..+|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|.+...+
T Consensus 32 v~W~~~~~g~~~~~~--~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~ 107 (389)
T 2jll_A 32 ITWKRAVDGFTFTEG--DKSLDGRIEVKGQ--HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQ 107 (389)
T ss_dssp EEEEETTTTEEECC----CCSSSSEEEEEC--SSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECCSC
T ss_pred EEEEeCCCCceeccC--cCCCCCeEEEecc--CCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEecCc
Confidence 579887433221110 0112567776543 24678999999999999999999984 456778899999888766555
Q ss_pred cceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
....+..|+.+.|.|.+.+.|.+ .+.|++++..+......++..... .....|.|.++...|.|.|+|.|.|..+.
T Consensus 108 ~~~~~~~g~~~~l~C~~~g~p~~--~i~W~~~g~~l~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 183 (389)
T 2jll_A 108 TIYYSWEGNPINISCDVKSNPPA--SIHWRRDKLVLPAKNTTNLKTYST--GRKMILEIAPTSDNDFGRYNCTATNHIGT 183 (389)
T ss_dssp CEEEECTTCCEEEEECEEEESCC--EEEEEETTEESSCTTCTTEEEEEC--SSCEEEEECCCSTTSSEEEEEEEEETTEE
T ss_pred ceEEeccCCEEEEEEEEEecCCC--eEEEEECCccCCcccCceEEEecc--CCEEEEEECCCChhhCEEEEEEEEcCCCc
Confidence 55567899999999999998877 899999999887654434444332 24568999999999999999999998433
No 12
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.84 E-value=3.9e-20 Score=129.21 Aligned_cols=130 Identities=22% Similarity=0.337 Sum_probs=102.3
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC--ceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeC
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLET 99 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 99 (207)
+.++.+..+. .....|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+...+....+..|+.+.|.|.+.+.
T Consensus 49 ~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~ 127 (191)
T 1epf_A 49 QQRISVVWND-DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127 (191)
T ss_dssp SSSEEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECS
T ss_pred CCeEEEEECC-CCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCC
Confidence 4566654432 245689999999999999999999853 3566778888888877777777888899999999999998
Q ss_pred CCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 100 PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 100 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
|.+ .+.|++++..+......++... ....|.|.++..+|.|.|+|.|.|..+.
T Consensus 128 p~~--~v~W~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 180 (191)
T 1epf_A 128 LPP--TIIWKHKGRDVILKKDVRFIVL-----SNNYLQIRGIKKTDEGTYRCEGRILARG 180 (191)
T ss_dssp SCC--EEEEEETTEEGGGGCCTTEEEC-----TTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred CCC--EEEEEECCEEeeccCCceEEEe-----cCCeEEECCCChhhCEEEEEEEEEecce
Confidence 877 8999999998865444333322 2347999999999999999999998543
No 13
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.84 E-value=8e-20 Score=127.68 Aligned_cols=122 Identities=24% Similarity=0.421 Sum_probs=97.8
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-c-eeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeC
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-K-ISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLET 99 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 99 (207)
+.++.+..++. +|.|.+++.+|+|.|+|.+.+.. . ......|.|..+|.+...+....+..|+.+.|.|.+.+.
T Consensus 52 ~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~ 127 (192)
T 2iep_A 52 DTRYSIRENGQ----LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGN 127 (192)
T ss_dssp CTTEEEEGGGT----EEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEE
T ss_pred CccEEEcCCcc----EEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEecc
Confidence 46666654443 79999999999999999998743 3 456678888888877777777888899999999999998
Q ss_pred CCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 100 PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 100 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|.+ .+.|++++..+....+ +... ....|.|.++..+|.|.|+|.+.|.
T Consensus 128 p~~--~v~W~~~~~~~~~~~~--~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~ 175 (192)
T 2iep_A 128 PKP--SVSWIKGDSALRENSR--IAVL-----ESGSLRIHNVQKEDAGQYRCVAKNS 175 (192)
T ss_dssp SCC--EEEEEETTEECCCCSS--EEEC-----TTSCEEESSCCGGGCEEEEEEEEET
T ss_pred CCc--eEEEEeCCEEccCCCc--EEEe-----cCCcEEEecCChhhCEEEEEEEEcC
Confidence 877 8999999988765433 2211 2347999999999999999999998
No 14
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.84 E-value=1.6e-19 Score=128.12 Aligned_cols=130 Identities=21% Similarity=0.280 Sum_probs=93.5
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEe--------------------ccceE-ecC
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVI--------------------SKAKI-IGN 79 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~--------------------~~~~~-~~~ 79 (207)
+.++.+...+ +...|.|.+++.+|+|.|+|.+.+.. .....+.|.|.. .|... ..+
T Consensus 47 ~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 124 (212)
T 2r15_A 47 SDRVKTGVTG--EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP 124 (212)
T ss_dssp CSSEEEEEET--TEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCC
T ss_pred CCeEEEEEeC--CEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCC
Confidence 3566554433 35679999999999999999998743 334444444331 12222 234
Q ss_pred cceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
....+..|+.+.|.|.+.+.|.| .+.|++++..+....+ +..... ......|.|.++..+|.|.|+|.|.|..+
T Consensus 125 ~~~~v~~g~~~~l~C~~~g~p~p--~v~W~~~~~~~~~~~~--~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g 198 (212)
T 2r15_A 125 DVVTIQEGKALNLTCNVWGDPPP--EVSWLKNEKALAQTDH--CNLKFE-AGRTAYFTINGVSTADSGKYGLVVKNKYG 198 (212)
T ss_dssp SEEEEETTCCEEEEEEEECSSCC--EEEEEETTEEECCCSS--EEEEEE-TTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CcEEEccCCeEEEEEEEcCCCCc--eEEEEECCeECccCCC--EEEEEc-CCCEEEEEEcCcchHHCeEEEEEEEcCCC
Confidence 55678899999999999998888 8999999998876544 222221 12456899999999999999999999843
No 15
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.83 E-value=4.7e-19 Score=128.03 Aligned_cols=153 Identities=18% Similarity=0.301 Sum_probs=102.5
Q ss_pred CeeEEccCCccceeeEEEEe--------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc------eeeeEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT--------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK------ISIGYK 66 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~ 66 (207)
|.|||+..+..+....+... ..+|+.+.. ...+.++|.|.+++.+|+|.|+|.+.+... ......
T Consensus 31 i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~ 109 (238)
T 2p1y_A 31 MYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTK 109 (238)
T ss_dssp EEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC-CSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEE
T ss_pred EEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc-cCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeE
Confidence 58999866544433322111 145777654 333567899999999999999999987421 224457
Q ss_pred EEEEecc------------ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC-----EEEEe-c------CCCc
Q psy3475 67 LNVVISK------------AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA-----NVVNY-S------QRGG 122 (207)
Q Consensus 67 l~v~~~~------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~-----~~~~~-~------~~~~ 122 (207)
|.|...+ .+...+....+..|+.+.|.|.+.+.+.+ .+.|++++ ..+.. . ...+
T Consensus 110 l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~--~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r 187 (238)
T 2p1y_A 110 LSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFD--YFPWYQQFPGEGPALLISILSVSDKKEDGR 187 (238)
T ss_dssp EEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCC--EEEEEEECTTSCCEEEEEEETTCSEEEETT
T ss_pred EEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCC--cEEEEEECCCCCCEEEEEEccCCCcccCCc
Confidence 7776543 33444667778899999999999998776 89999853 11111 0 1122
Q ss_pred eEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 123 ISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 123 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+....+.......|.|.+++.+|+|.|+|.+.|.
T Consensus 188 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 221 (238)
T 2p1y_A 188 FTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT 221 (238)
T ss_dssp EEEEEETTTTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred eEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeC
Confidence 3332222234568999999999999999999997
No 16
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.83 E-value=5.1e-19 Score=131.27 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=104.1
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc------eeee
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK------ISIG 64 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~ 64 (207)
|.|||+.++..+....+... .++|+.+..+...+.++|.|.+++.+|+|.|+|.+.+... ....
T Consensus 60 v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~ 139 (282)
T 1qok_A 60 MHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQG 139 (282)
T ss_dssp EEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCC
T ss_pred EEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCC
Confidence 58999876544443332221 1478887766555678999999999999999999987421 2245
Q ss_pred EEEEEEecc---------------ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe--CCEEEE---ec------
Q psy3475 65 YKLNVVISK---------------AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR--GANVVN---YS------ 118 (207)
Q Consensus 65 ~~l~v~~~~---------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~--~~~~~~---~~------ 118 (207)
+.|.|..++ .+...+....+..|+.++|.|.+.+.+ + .+.|++ ++..+. ..
T Consensus 140 ~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~--~v~W~k~~~g~~~~~~~~~~~~~~~ 216 (282)
T 1qok_A 140 TTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-S--YMHWFQQKPGTSPKLWIYSTSNLAS 216 (282)
T ss_dssp EEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-S--CCEEEEECTTSCCEEEEETTTEECT
T ss_pred EEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-c--eEEEEEECCCCCcEEEEEEecCCCC
Confidence 577777643 233345567788999999999999987 5 799998 554321 11
Q ss_pred -CCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 119 -QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 119 -~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
...++.... ......|.|.+++.+|+|.|+|.+.|.
T Consensus 217 ~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 253 (282)
T 1qok_A 217 GVPARFSGSG--SGTSYSLTISRMEAEDAATYYCQQRSS 253 (282)
T ss_dssp TCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred cccCCeEEec--CCCEEEEEEccCChhHCEEEEEEEeeC
Confidence 112333222 124568999999999999999999885
No 17
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=99.83 E-value=3.9e-19 Score=143.95 Aligned_cols=120 Identities=20% Similarity=0.341 Sum_probs=98.8
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN 113 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~ 113 (207)
...|.|.+++.+|+|.|+|.+.|. +.......|.|..+|.+...+....+..|+.+.|.|.+.+.|.| .+.|++++.
T Consensus 346 ~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p--~v~W~k~g~ 423 (570)
T 3b43_A 346 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPF--QVSWHKDKR 423 (570)
T ss_dssp EEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSC--CCEEEETTE
T ss_pred EEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCC--EEEEEECCE
Confidence 458999999999999999999984 45677889999998877777777888899999999999999888 799999999
Q ss_pred EEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCe
Q psy3475 114 VVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~ 160 (207)
.+....+ +....+ .....|.|.++..+|+|.|+|.|.|..+..
T Consensus 424 ~l~~~~~--~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~ 466 (570)
T 3b43_A 424 ELRSGKK--YKIMSE--NFLTSIHILNVDSADIGEYQCKASNDVGSD 466 (570)
T ss_dssp ECCSSSS--EEEEEE--TTEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred ECcCCCC--EEEEEc--CCEEEEEECCCChhhCEEEEEEEEECCCeE
Confidence 8765443 333322 234689999999999999999999995543
No 18
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.83 E-value=1.7e-19 Score=126.60 Aligned_cols=130 Identities=18% Similarity=0.297 Sum_probs=97.2
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEec-----CcceEEecCCcEEEEEE
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIG-----NSELYIKSGSDINLTCV 95 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~-----~~~~~~~~g~~~~l~C~ 95 (207)
+.++.+.... .+.++|.|.+++.+|+|.|+|.+.+. +.....+.|.|..++..... +....+..|+.+.|.|.
T Consensus 49 ~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~ 127 (197)
T 2j8h_A 49 GLKYRIQEFK-GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIP 127 (197)
T ss_dssp SSSEEEEEET-TTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEE
T ss_pred CCcEEEEEcC-CCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEE
Confidence 3455544332 24568999999999999999999874 34567778888776654322 23456778999999999
Q ss_pred EeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEe-cccCCCeEEEEEeecCCC
Q psy3475 96 VLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISK-AVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 96 ~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~Y~C~~~n~~~ 158 (207)
+.+.|.+ .+.|++++..+....+ +.... ......|.|.+ +..+|.|.|+|.|.|..+
T Consensus 128 ~~g~p~p--~i~W~~~~~~~~~~~~--~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g 185 (197)
T 2j8h_A 128 FSGKPDP--VITWQKGQDLIDNNGH--YQVIV--TRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185 (197)
T ss_dssp EEEESCC--EEEEEESSCEECSSSS--CEEEE--CSSEEEEECTTCCCGGGCEEEEEEEEETTE
T ss_pred EEecCCC--cEEEEECCEEeecCCC--EEEEE--cCCceEEEEeCCCCcccCEeEEEEEEeCCC
Confidence 9998887 8999999988864433 22222 12457899999 999999999999999843
No 19
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.83 E-value=1.7e-19 Score=129.21 Aligned_cols=162 Identities=11% Similarity=0.128 Sum_probs=105.2
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc----eeeeEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK----ISIGYK 66 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~ 66 (207)
|.|||+.++..+....+... ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.+... ......
T Consensus 34 v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~ 113 (220)
T 2fbj_H 34 MSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTL 113 (220)
T ss_dssp EEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEE
T ss_pred EEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEE
Confidence 58999976654443333221 2478988776555778999999999999999999987432 234567
Q ss_pred EEEEec----cceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEe
Q psy3475 67 LNVVIS----KAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISK 140 (207)
Q Consensus 67 l~v~~~----~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~ 140 (207)
|.|..+ |.+...+ ...+..|+.+.|.|.+.+. |.....+.|++++..+....... ....++ ....+.|.|..
T Consensus 114 L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~-~~~~~g~~~~~s~L~i~~ 191 (220)
T 2fbj_H 114 VTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPP-ALASGGRYTMSNQLTLPA 191 (220)
T ss_dssp EEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCC-EECSSSCEEEEEEEEECG
T ss_pred EEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCc-eECCCCCEEEEEEEEECH
Confidence 777642 2222222 2334679999999999987 54123899999886542111100 000000 11234688888
Q ss_pred cccCCCeEEEEEeecCCCCeEEEE
Q psy3475 141 AVTSDSGNYTCAPSSSDGASVVVH 164 (207)
Q Consensus 141 ~~~~d~g~Y~C~~~n~~~~~~~~~ 164 (207)
....|.|.|+|.|.|..+....+.
T Consensus 192 ~~~~d~g~ytC~v~n~~~~~~~~~ 215 (220)
T 2fbj_H 192 VECPEGESVKCSVQHDSNPVQELD 215 (220)
T ss_dssp GGSCTTCEEEEEEEETTSCCEEEE
T ss_pred HHcCCCCeEEEEEEcCCCceEcCC
Confidence 888899999999999855544443
No 20
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.83 E-value=7e-19 Score=123.03 Aligned_cols=119 Identities=22% Similarity=0.339 Sum_probs=93.7
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEE---eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEE
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVV---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~ 109 (207)
+..+|.|.+++.+|+|.|+|.+.+.. .......|.|. .+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|+
T Consensus 61 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~ 138 (194)
T 2a38_A 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTP--VVKFY 138 (194)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCC--EEEEE
T ss_pred CEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCC--eEEEE
Confidence 35689999999999999999998743 35556677777 45555556667788899999999999998887 89999
Q ss_pred eCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 110 RGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+++..+..... +....+ .....|.|.++..+|.|.|+|.+.|..+
T Consensus 139 ~~~~~~~~~~~--~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 183 (194)
T 2a38_A 139 RDGAEIQSSLD--FQISQE--GDLYSLLIAEAYPEDSGTYSVNATNSVG 183 (194)
T ss_dssp ETTEECCCSSS--EEEEEE--TTEEEEEEEEECGGGCEEEEEEEEETTE
T ss_pred ECCEECCCCCc--EEEEEc--CCEEEEEECCCChhcCeEEEEEEEeCCC
Confidence 99998765433 333222 2345899999999999999999999843
No 21
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.83 E-value=2e-20 Score=132.87 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=102.6
Q ss_pred CeeEEccCCccceeeEEEEe-----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc---eeeeEEEEEE--
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK---ISIGYKLNVV-- 70 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~-- 70 (207)
|.|||+..+..+....+... .++|+.+.. ..+.++|.|.+++.+|+|.|+|.+.+... ......|.|.
T Consensus 30 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~ 107 (211)
T 3tv3_L 30 VSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK--SGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQ 107 (211)
T ss_dssp EEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCS
T ss_pred EEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc--cCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCC
Confidence 57999765544332211100 246787655 33577999999999999999999987533 4556778877
Q ss_pred --eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEE-ec-ccceEEEEEEecccCCC
Q psy3475 71 --ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVT-EK-QTRTSRLVISKAVTSDS 146 (207)
Q Consensus 71 --~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~i~~~~~~d~ 146 (207)
.+|.+...+.......|+.+.|.|.+.+.+++...+.|+++|..+............ ++ ....+.|.|..+..+|.
T Consensus 108 ~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~ 187 (211)
T 3tv3_L 108 PKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSH 187 (211)
T ss_dssp CCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHS
T ss_pred CCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCC
Confidence 445444444444444799999999999875544489999999887531110000000 00 11235788988888999
Q ss_pred eEEEEEeecCC
Q psy3475 147 GNYTCAPSSSD 157 (207)
Q Consensus 147 g~Y~C~~~n~~ 157 (207)
|.|+|.|.|..
T Consensus 188 g~Y~C~v~~~~ 198 (211)
T 3tv3_L 188 RSYSCQVTHEG 198 (211)
T ss_dssp SCEEEEEEETT
T ss_pred CeEEEEEEECC
Confidence 99999999973
No 22
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.83 E-value=8.4e-20 Score=131.38 Aligned_cols=154 Identities=17% Similarity=0.156 Sum_probs=95.6
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~ 68 (207)
|.|||+..+..+......+. .++|+.+..+...+.++|.|.+++.+|+|.|+|.+.+... ......|.
T Consensus 34 v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~ 113 (227)
T 1mju_H 34 INWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVT 113 (227)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred EEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEE
Confidence 58999876544443333221 2578888766555788999999999999999999987432 23455777
Q ss_pred EEe----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccC
Q psy3475 69 VVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144 (207)
Q Consensus 69 v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 144 (207)
|.. +|.+........+..|+.++|.|.+.+..+....+.|++++..+......... ........+.|.|..+..+
T Consensus 114 V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~ 192 (227)
T 1mju_H 114 VSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTWP 192 (227)
T ss_dssp ECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEE-ETTEEEEEEEEEECTTTTT
T ss_pred EcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCcee-cCCeEEEEEEEEEchhhcC
Confidence 764 23222222223456799999999999863223389999987653211111111 0000113457888888887
Q ss_pred CCeEEEEEeecC
Q psy3475 145 DSGNYTCAPSSS 156 (207)
Q Consensus 145 d~g~Y~C~~~n~ 156 (207)
| |.|+|.|.|.
T Consensus 193 ~-g~Y~C~a~n~ 203 (227)
T 1mju_H 193 S-QSITCNVAHP 203 (227)
T ss_dssp T-SCCEEEEEEG
T ss_pred C-CeEEEEEEEC
Confidence 8 9999999997
No 23
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.83 E-value=6.8e-20 Score=130.65 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=98.2
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC------ceeeeE
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP------KISIGY 65 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~------~~~~~~ 65 (207)
|.|||+..+..+........ ..+|+.+.. ..+.++|.|.+++.+|+|.|+|.+.+.. ......
T Consensus 33 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~ 110 (218)
T 3s96_B 33 IEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS--SGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGT 110 (218)
T ss_dssp EEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCE
T ss_pred EEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec--CCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcE
Confidence 58999875544433322211 125777665 3457789999999999999999998743 234456
Q ss_pred EEEEEe----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEe
Q psy3475 66 KLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISK 140 (207)
Q Consensus 66 ~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~ 140 (207)
.|.|.. +|.+...+.......|+.+.|.|.+.+.+++...+.|+++|..+............++ ....+.|.|..
T Consensus 111 ~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~ 190 (218)
T 3s96_B 111 KVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTS 190 (218)
T ss_dssp EEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEH
T ss_pred EEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeH
Confidence 788873 3444333333344567899999999985433347999999998765221100000011 11234588888
Q ss_pred cccCCCeEEEEEeecCC
Q psy3475 141 AVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 141 ~~~~d~g~Y~C~~~n~~ 157 (207)
...+|.|.|+|.|.|..
T Consensus 191 ~~~~d~g~Y~C~a~n~~ 207 (218)
T 3s96_B 191 DQWRSHNSFTCQVTHEG 207 (218)
T ss_dssp HHHHTCSCEEEEEEETT
T ss_pred HHccCCCeEEEEEEeCC
Confidence 88889999999999973
No 24
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.83 E-value=4.2e-19 Score=129.88 Aligned_cols=153 Identities=21% Similarity=0.270 Sum_probs=103.9
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC---c--eeeeEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP---K--ISIGYK 66 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~--~~~~~~ 66 (207)
|.|||+.++.........+. ..+|+.+..+...+.++|.|.+++.+|+|.|+|.+.+.. . ......
T Consensus 42 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~ 121 (257)
T 3gkz_A 42 WSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTS 121 (257)
T ss_dssp EEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEE
T ss_pred EEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEE
Confidence 57999876655444433322 247888877665678899999999999999999998741 1 344567
Q ss_pred EEEEec--------------cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEEE---ec-------CC
Q psy3475 67 LNVVIS--------------KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVVN---YS-------QR 120 (207)
Q Consensus 67 l~v~~~--------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~~---~~-------~~ 120 (207)
|.|..+ +.+...+....+..|+.++|.|.+.+.+.+. .+.|++. +.... .. ..
T Consensus 122 l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 200 (257)
T 3gkz_A 122 VTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSS-HLYWYQQKPGSSPKLWIYSTSNLASGVP 200 (257)
T ss_dssp EEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGG-GEEEEEECTTSCCEEEEETTTEECTTCC
T ss_pred EeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccce-EEEEEEECCCCCcEEEEEEccccCCCcC
Confidence 777665 3334445667888999999999998865442 6899972 22211 11 01
Q ss_pred CceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 121 GGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 121 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.++.... ......|.|.+++.+|+|.|+|.+.+.
T Consensus 201 ~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 234 (257)
T 3gkz_A 201 ARFSGSG--SGTSYSLTISSMEAEDAASYFCHQWSS 234 (257)
T ss_dssp TTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred CCEEEec--CCCEEEEEECCCChHHCEEEEEEEccC
Confidence 2232222 224567999999999999999999886
No 25
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.82 E-value=4.4e-19 Score=129.88 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=104.4
Q ss_pred CeeEEccCCccceeeEEEE---------eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC--------c--e
Q psy3475 1 VSWIRKRDLHILTVGILTY---------TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--------K--I 61 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~---------~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--------~--~ 61 (207)
|.|||+..+..+....... ..++||.+..+...+.++|.|.+++.+|+|.|+|.+.+.. . .
T Consensus 34 v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~ 113 (257)
T 1f3r_B 34 VSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFW 113 (257)
T ss_dssp CEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEE
T ss_pred EEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCcccccccccc
Confidence 6899986554333322211 1257888876655677899999999999999999998742 1 2
Q ss_pred eeeEEEEEEecc---------------ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe--CCEEE---Eec---
Q psy3475 62 SIGYKLNVVISK---------------AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR--GANVV---NYS--- 118 (207)
Q Consensus 62 ~~~~~l~v~~~~---------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~--~~~~~---~~~--- 118 (207)
.....|.|..++ .+...+....+..|+.++|.|.+.+.+.+ .+.|++ ++..+ ...
T Consensus 114 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~g~~~~~~~~~~~~ 191 (257)
T 1f3r_B 114 GPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINN--YLAWYQQKLGEAPKLLIYNTNS 191 (257)
T ss_dssp CCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBT--CEEEEEECTTSCCEEEEETTTE
T ss_pred CCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCC--cEEEEEECCCCCcEEEEEEccC
Confidence 244577776542 12233556667899999999999988766 799998 45432 111
Q ss_pred ----CCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 119 ----QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 119 ----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
...++.... ......|.|.+++.+|+|.|+|.+.|.
T Consensus 192 ~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 231 (257)
T 1f3r_B 192 LQTGIPSRFSGSG--SGTDYTLTISSLQPEDVATYFCYQYNN 231 (257)
T ss_dssp ECTTCCTTEEEEE--EBTEEEEEECSCCGGGCSEEEEEEESS
T ss_pred CCCCcCCCEEEec--CCCEEEEEECCCChhhCEEEEEEEeCC
Confidence 012333322 124568999999999999999999996
No 26
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.82 E-value=2.3e-19 Score=128.38 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=106.7
Q ss_pred CeeEEccCCccceeeEEEEe------------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC---ceeeeE
Q psy3475 1 VSWIRKRDLHILTVGILTYT------------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP---KISIGY 65 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~------------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~ 65 (207)
|.|||+.++..+......+. ..+|+.+..+...+.++|.|.+++.+|+|.|.|.+.+.. ......
T Consensus 34 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~ 113 (221)
T 3m8o_H 34 VHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGT 113 (221)
T ss_dssp EEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCE
T ss_pred EEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCCHHHCEEEEEEEECCChhheECCCE
Confidence 58999987765554443332 247898887666678899999999999999999998742 234556
Q ss_pred EEEEEe----ccceE-ecCcceEEecCCcEEEEEEEee-CCCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEE
Q psy3475 66 KLNVVI----SKAKI-IGNSELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVI 138 (207)
Q Consensus 66 ~l~v~~----~~~~~-~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i 138 (207)
.|.|.. +|.+. ..+... ..|+.+.|.|.+.+ .|.....+.|++++..+............++ ....+.|.|
T Consensus 114 ~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i 191 (221)
T 3m8o_H 114 LVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTL 191 (221)
T ss_dssp EEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEE
T ss_pred EEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEE
Confidence 777752 22222 223222 67999999999998 4441348999998865532111000000000 112346899
Q ss_pred EecccCCCeEEEEEeecCCCCeEEEEE
Q psy3475 139 SKAVTSDSGNYTCAPSSSDGASVVVHV 165 (207)
Q Consensus 139 ~~~~~~d~g~Y~C~~~n~~~~~~~~~v 165 (207)
......|.|.|+|.|.+..+....+.+
T Consensus 192 ~~~~~~d~g~ytC~v~~~~~~~~~~~v 218 (221)
T 3m8o_H 192 PATQCLAGKSVTCHVKHYTNPSQDVTV 218 (221)
T ss_dssp EGGGSCTTCEEEEEEEETTSCCEEEEE
T ss_pred CHHHcCCCCeEEEEEEECCCCceeeec
Confidence 999999999999999998655544443
No 27
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.82 E-value=6.6e-19 Score=125.14 Aligned_cols=137 Identities=25% Similarity=0.423 Sum_probs=101.7
Q ss_pred CCeEEEeecCCCCcEEEEEcccCC-CCCeEEEEEEecC-Cc-eeeeEEEEEEec-------cceEecCcceEEecCCcEE
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQL-RDSGTYECQVSTE-PK-ISIGYKLNVVIS-------KAKIIGNSELYIKSGSDIN 91 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~-~~-~~~~~~l~v~~~-------~~~~~~~~~~~~~~g~~~~ 91 (207)
+.++.+.... .+...|.|.+++. +|+|.|+|.+.+. +. ....+.|.|..+ |.+...+....+..|+.+.
T Consensus 51 ~~~~~~~~~~-~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~ 129 (212)
T 2yd1_A 51 QSRYTVLEQP-GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVL 129 (212)
T ss_dssp STTEEEEEET-TTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEE
T ss_pred cceeEEEEcC-CCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEE
Confidence 4566654432 2346899999999 9999999999874 33 567778888765 4455556667788899999
Q ss_pred EEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC----eEEEEEec
Q psy3475 92 LTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA----SVVVHVLN 167 (207)
Q Consensus 92 l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~----~~~~~v~~ 167 (207)
|.|.+.+.|.+ .+.|++++..+..... ++.. ....|.|.++..+|.|.|+|.|.|..+. .+.|.|..
T Consensus 130 l~C~~~g~p~p--~i~W~~~~~~~~~~~~-~~~~------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~ 200 (212)
T 2yd1_A 130 MTCKAIGNPTP--NIYWIKNQTKVDMSNP-RYSL------KDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200 (212)
T ss_dssp ECCEEECSSCC--EEEEEETTEECCTTST-TEEE------ETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred EEEEeccCCCC--eEEEEECCeEcccCCC-eEEc------cCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence 99999998877 8999999988765322 2221 1248999999999999999999998332 25666654
Q ss_pred C
Q psy3475 168 G 168 (207)
Q Consensus 168 ~ 168 (207)
.
T Consensus 201 ~ 201 (212)
T 2yd1_A 201 R 201 (212)
T ss_dssp -
T ss_pred c
Confidence 3
No 28
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.82 E-value=3.6e-18 Score=126.32 Aligned_cols=130 Identities=22% Similarity=0.317 Sum_probs=99.6
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecC-cceEEecCCcEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGN-SELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
+..+|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+...+ ....+..|+.+.|.|.+.+.|.+ .+.|+++
T Consensus 59 ~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~--~v~W~~~ 136 (284)
T 2rik_A 59 NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI--KVLWYKD 136 (284)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCC--EEEEEET
T ss_pred CEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCC--EEEEEEC
Confidence 3568999999999999999999874 345677888898888765543 34567899999999999998777 8999999
Q ss_pred CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC---CeEEEEEecCC
Q psy3475 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVLNGK 169 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~---~~~~~~v~~~~ 169 (207)
+..+......+. .. ......|.|.++..+|.|.|+|.+.|..+ ....+.+..++
T Consensus 137 ~~~~~~~~~~~~--~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 193 (284)
T 2rik_A 137 ETEIQESSKFRM--SF--VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP 193 (284)
T ss_dssp TEECCCSSSEEE--EE--ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred CEECcCCCcEEE--EE--cCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence 998765543222 21 12457899999999999999999999833 34455555443
No 29
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.82 E-value=3.3e-18 Score=119.42 Aligned_cols=122 Identities=20% Similarity=0.330 Sum_probs=98.5
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe--C
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR--G 111 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~--~ 111 (207)
....|.|.+++.+|+|.|+|.+.+.+.....+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++ +
T Consensus 54 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~~ 131 (190)
T 2wv3_A 54 SNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHP--EWMWRKKEN 131 (190)
T ss_dssp SEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCC--EEEEEEEET
T ss_pred ccEEEEEecCCcccCEEEEEEEEeCCcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCC--ceEEEEcCC
Confidence 346899999999999999999998755677888999998887777777788999999999999998887 899999 7
Q ss_pred CEEEEec-CCCceEEEEecccceEEEEEEecc-cCCCeEEEEEeecCCCC
Q psy3475 112 ANVVNYS-QRGGISVVTEKQTRTSRLVISKAV-TSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 112 ~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~n~~~~ 159 (207)
+..+... ...++.... ......|.|.++. .+|.|.|+|.|.|..+.
T Consensus 132 g~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~ 179 (190)
T 2wv3_A 132 GVFEEISNSSGRFFIIN--KENYTELNIVNLQITEDPGEYECNATNSIGS 179 (190)
T ss_dssp TEEEECCCTTSCEEEEE--CSSEEEEEECSCCTTTSCEEEEEEEECSSCE
T ss_pred CceeeeecCCCeEEEec--CCCeeEEEEEeccccCCCEEEEEEEEecCCc
Confidence 8776542 223343333 2244689999999 79999999999998443
No 30
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.82 E-value=4.2e-19 Score=127.33 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=100.5
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-------ceee
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-------KISI 63 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-------~~~~ 63 (207)
|.|||+.++..+....+.+. .++||.+..+...+.++|.|.+++.+|+|.|+|.+.+.. ....
T Consensus 34 v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~ 113 (223)
T 1dee_B 34 MHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQ 113 (223)
T ss_dssp EEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECC
T ss_pred EEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecC
Confidence 58999876654443332211 247898877665678899999999999999999998743 1224
Q ss_pred eEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe-CCEEEEecCCCceEEEEec-ccceEEEE
Q psy3475 64 GYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEK-QTRTSRLV 137 (207)
Q Consensus 64 ~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 137 (207)
.+.|.|.. +|.+...+....+..|+.+.|.|.+.+..+....+.|++ +|..+....... ....++ ....+.|.
T Consensus 114 ~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~-~~~~~~~~~~~s~L~ 192 (223)
T 1dee_B 114 GTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFP-SVLRGGKYAATSQVL 192 (223)
T ss_dssp CEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECC-CEEETTEEEEEEEEE
T ss_pred cEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECC-ccccCCeEEEEEEEE
Confidence 45777763 232222121223467899999999998733333899999 887653200000 000000 11235688
Q ss_pred EEeccc--CCCeEEEEEeecCCC
Q psy3475 138 ISKAVT--SDSGNYTCAPSSSDG 158 (207)
Q Consensus 138 i~~~~~--~d~g~Y~C~~~n~~~ 158 (207)
|..... +|.|.|+|.|.|..+
T Consensus 193 i~~~~~~~~d~g~y~C~v~n~~~ 215 (223)
T 1dee_B 193 LPSKDVAQGTNEHVVCKVQHPNG 215 (223)
T ss_dssp EECTTTTSTTCCEEEEEEECTTC
T ss_pred EcHHHhccCCCCEEEEEEEeCCC
Confidence 877766 789999999999843
No 31
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.82 E-value=9.5e-19 Score=127.87 Aligned_cols=154 Identities=21% Similarity=0.307 Sum_probs=101.2
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC----ceeeeEEEEEEe
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP----KISIGYKLNVVI 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~ 71 (207)
|.|||+.++..+....... ..++||.+.... +.++|.|.+++.+|+|.|+|.+.+.. .......|.|..
T Consensus 36 v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~ 113 (256)
T 3ux9_B 36 VSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSG--TSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLG 113 (256)
T ss_dssp CEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET--TEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC-
T ss_pred EEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccC--CEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEEC
Confidence 6899987654443322110 024688765433 56789999999999999999998732 233456777766
Q ss_pred ccc--------------------eEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEEE----e--------
Q psy3475 72 SKA--------------------KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVVN----Y-------- 117 (207)
Q Consensus 72 ~~~--------------------~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~~----~-------- 117 (207)
++. .+..+....+.+|+.++|.|.+.+.+.+...+.|+++ +..+. .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~ 193 (256)
T 3ux9_B 114 SGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTY 193 (256)
T ss_dssp ---------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEE
T ss_pred CCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCcee
Confidence 441 2333444567899999999999987632338999984 32211 1
Q ss_pred ---cCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 118 ---SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 118 ---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
....++....+.......|.|.+++.+|+|.|+|.+.|.
T Consensus 194 ~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 235 (256)
T 3ux9_B 194 YADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYID 235 (256)
T ss_dssp ECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred cCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence 111244444433345567999999999999999999986
No 32
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.82 E-value=1.9e-18 Score=126.41 Aligned_cols=152 Identities=23% Similarity=0.369 Sum_probs=103.3
Q ss_pred CeeEEccCCccceeeEEEE------eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-----ceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTY------TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-----KISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~------~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v 69 (207)
|.|||+.++..+......+ ..++||.+..+...+.++|.|.+++.+|+|.|+|.+.+.. .......|.|
T Consensus 35 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V 114 (256)
T 3tf7_C 35 LFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTV 114 (256)
T ss_dssp EEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEE
T ss_pred EEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEE
Confidence 5899987665554433321 2256888765566678899999999999999999998732 1334557777
Q ss_pred Ee--------------------ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CE---EEEec------
Q psy3475 70 VI--------------------SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--AN---VVNYS------ 118 (207)
Q Consensus 70 ~~--------------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~---~~~~~------ 118 (207)
.. ++.+...+....+..|+.++|.|.+.+. .+ .+.|++. +. .+...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~--~v~W~k~~~~~~~~~~~~~~~~~~~ 191 (256)
T 3tf7_C 115 SPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HN--YMYWYRQDTGHELRLIYYSYGAGNL 191 (256)
T ss_dssp EC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CS--EEEEEEECTTSCEEEEEEEESTTCC
T ss_pred eCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ce--EEEEEEECCCCCeEEEEEEcCCCce
Confidence 65 3444555667778899999999999876 45 8999972 21 11110
Q ss_pred ----CCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 119 ----QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 119 ----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
...++..... ......|.|.+++.+|+|.|+|.+.|.
T Consensus 192 ~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 232 (256)
T 3tf7_C 192 QIGDVPDGYKATRT-TQEDFFLTLESASPSQTSLYFCASSDA 232 (256)
T ss_dssp EECSCCTTCEEECC-SSSBCEEEESSCCGGGCEEEEEEEEEE
T ss_pred ecCccCCceEEEeC-CCCeEEEEECCCCHHHCEEEEEEecCC
Confidence 0112222111 123458999999999999999999886
No 33
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.82 E-value=2.7e-19 Score=129.05 Aligned_cols=155 Identities=18% Similarity=0.220 Sum_probs=98.8
Q ss_pred CeeEEccCCccceeeEEEEeC------------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC---------
Q psy3475 1 VSWIRKRDLHILTVGILTYTN------------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--------- 59 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~------------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--------- 59 (207)
|.|||+.++..+......+.. .+||.+..+...+.++|.|.+++.+|+|.|.|.+.+..
T Consensus 36 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~ 115 (232)
T 3qhz_H 36 VSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFD 115 (232)
T ss_dssp EEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCC---CCCCCC
T ss_pred eEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECcCChhhCEEEEEEEeeccCccccccce
Confidence 489999877665555444322 26999888777788999999999999999999998541
Q ss_pred ceeeeEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceE
Q psy3475 60 KISIGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTS 134 (207)
Q Consensus 60 ~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~ 134 (207)
.......|.|.. +|.+...+....+..|+.+.|.|.+.+.+++...+.|++++..+........ ...++ ....+
T Consensus 116 ~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~-~~~~g~~~~~s 194 (232)
T 3qhz_H 116 LWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSS 194 (232)
T ss_dssp EECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE-ECTTSCEEEEE
T ss_pred eeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccce-eCCCCCEEEEE
Confidence 233445677652 2333222333345579999999999997654557899998753211100000 00000 11235
Q ss_pred EEEEEecccCCCeEEEEEeecCC
Q psy3475 135 RLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 135 ~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
.|.|......| |.|+|.|.|..
T Consensus 195 ~L~i~~~~~~~-g~ytC~v~~~~ 216 (232)
T 3qhz_H 195 VVTVPSSSLGT-QTYICNVNHKP 216 (232)
T ss_dssp EEEEEGGGGGT-CCCEEEEEEGG
T ss_pred EEEEchhhcCC-CEEEEEEEeCC
Confidence 78888888888 99999999973
No 34
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.81 E-value=1.1e-18 Score=120.87 Aligned_cols=109 Identities=23% Similarity=0.365 Sum_probs=89.7
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA 112 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~ 112 (207)
..+|.|.+++.+|+|.|+|.+.+... ....+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.|. .+.|++++
T Consensus 59 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~v~W~~~~ 137 (182)
T 1rhf_A 59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPV-TIVWWRGT 137 (182)
T ss_dssp EEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCC-EEEEEETT
T ss_pred eEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCC-EEEEEcCC
Confidence 45899999999999999999987532 4567899999988877777778889999999999999876654 78999999
Q ss_pred EEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 113 NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
..+..... ....|.|.++ +|+|.|+|.|.|..
T Consensus 138 ~~~~~~~~-----------~~~~L~i~~~--~d~G~Y~C~a~N~~ 169 (182)
T 1rhf_A 138 TKIGGPAP-----------SPSVLNVTGV--TQSTMFSCEAHNLK 169 (182)
T ss_dssp EECSCSEE-----------SSEEEEECCC--SSCEEEEEEEEETT
T ss_pred eECCCCCC-----------CceEEEEecc--ccCeEEEEEEECCC
Confidence 87753321 3467888877 58999999999983
No 35
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.81 E-value=1.3e-18 Score=129.65 Aligned_cols=169 Identities=15% Similarity=0.207 Sum_probs=108.0
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC----c--eeee
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP----K--ISIG 64 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~--~~~~ 64 (207)
|.|||+.++..+....+... .++||.+..+...+.++|.|.+++.+|+|.|+|.+.+.. . ....
T Consensus 56 v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~ 135 (291)
T 2gki_A 56 MHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQG 135 (291)
T ss_dssp EEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCC
T ss_pred EEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCC
Confidence 58999876554443333221 136777665544457899999999999999999998642 1 2234
Q ss_pred EEEEEEec----------------cceEecCcceEEecCCcEEEEEEEeeCCCCC----cEEEEEeC--CE---EEEecC
Q psy3475 65 YKLNVVIS----------------KAKIIGNSELYIKSGSDINLTCVVLETPDPP----SFIYWYRG--AN---VVNYSQ 119 (207)
Q Consensus 65 ~~l~v~~~----------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~----~~~~W~~~--~~---~~~~~~ 119 (207)
..|.|..+ +.+...+....+.+|+.++|.|.+.+.+.+. ..+.|+++ +. .+....
T Consensus 136 ~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~ 215 (291)
T 2gki_A 136 TSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWA 215 (291)
T ss_dssp EEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETT
T ss_pred cEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEc
Confidence 56777661 2222335567788999999999998875432 16899984 22 222111
Q ss_pred -------CCceEEEEecccceEEEEEEecccCCCeEEEEEeecC----CCCeEEEEEecCCcc
Q psy3475 120 -------RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS----DGASVVVHVLNGKKF 171 (207)
Q Consensus 120 -------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~----~~~~~~~~v~~~~~~ 171 (207)
..++.... ......|.|.+++.+|+|.|+|.+.|. .+....|.|......
T Consensus 216 ~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~~~~ 276 (291)
T 2gki_A 216 STRESGVPDRFTGSG--SGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGTKLEIKHHHHH 276 (291)
T ss_dssp TEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC---
T ss_pred ccCCCCcCCCEEEEe--cCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCCEEEEEEeeEcC
Confidence 22333322 124568999999999999999999986 334445555544333
No 36
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.81 E-value=2.4e-18 Score=120.46 Aligned_cols=130 Identities=20% Similarity=0.401 Sum_probs=96.9
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEec---CcceEEecCCcEEEEEEEe
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIG---NSELYIKSGSDINLTCVVL 97 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~---~~~~~~~~g~~~~l~C~~~ 97 (207)
+.++.+..+. ...+|.|.+++.+|+|.|+|.+.+. +.......|.|..+|..... +....+..|+.+.|.|.+.
T Consensus 51 ~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~ 128 (197)
T 3lcy_A 51 SRKYKMSSDG--RTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYI 128 (197)
T ss_dssp CSSEEEEESS--SEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEE
T ss_pred CccEEEEeCC--CEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEe
Confidence 4555554333 4568999999999999999999874 44566777888776654322 3445677899999999999
Q ss_pred eCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEeccc-CCCeEEEEEeecCCCC
Q psy3475 98 ETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT-SDSGNYTCAPSSSDGA 159 (207)
Q Consensus 98 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~n~~~~ 159 (207)
+.|.+ .+.|++++..+..... +.... ......|.|.++.. +|.|.|+|.|.|..+.
T Consensus 129 ~~p~p--~v~W~~~~~~~~~~~~--~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~ 185 (197)
T 3lcy_A 129 GRPVP--AMTWFHGQKLLQNSEN--ITIEN--TEHYTHLVMKNVQRKTHAGKYKVQLSNVFGT 185 (197)
T ss_dssp EESCC--EEEEEETTEECCCCSS--EEEEE--CSSEEEEEESSCCHHHHCEEEEEEEECSSCE
T ss_pred eeeCC--eeEEeECCEECCCCCc--eEEEE--cCCEEEEEEccccchhhCceEEEEEEcCcCc
Confidence 98888 8999999998865443 22222 22347899999985 8999999999998443
No 37
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.81 E-value=6.4e-19 Score=125.22 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=99.2
Q ss_pred CeeEEccCCccceeeEEE---E--eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEe--
Q psy3475 1 VSWIRKRDLHILTVGILT---Y--TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVI-- 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~---~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~-- 71 (207)
|.|||++.+..+....+. . ...+|+.+..+ .+.++|.|.+++.+|+|.|+|.+.+... ......|.|..
T Consensus 33 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~ 110 (213)
T 3d9a_L 33 LHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGS--GTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRAD 110 (213)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE--TTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCC
T ss_pred EEEEEeCCCCCcEEEEEEcccccccccccEEEEcC--CCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCC
Confidence 589998765443322210 0 11367776642 3567899999999999999999987432 23345677754
Q ss_pred -ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec---ccceEEEEEEecccCCCe
Q psy3475 72 -SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDSG 147 (207)
Q Consensus 72 -~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g 147 (207)
+|.+...+.......|+.+.|.|.+.+.+++...+.|+++|..+............+. ....+.|.|.++..+|.|
T Consensus 111 ~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G 190 (213)
T 3d9a_L 111 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN 190 (213)
T ss_dssp BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCC
T ss_pred CCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCC
Confidence 4444333333333478899999999985433337999999988754300000000000 012358999999999999
Q ss_pred EEEEEeecC
Q psy3475 148 NYTCAPSSS 156 (207)
Q Consensus 148 ~Y~C~~~n~ 156 (207)
.|+|.|.|.
T Consensus 191 ~Y~C~a~n~ 199 (213)
T 3d9a_L 191 SYTCEATHK 199 (213)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEEEc
Confidence 999999998
No 38
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.81 E-value=2e-19 Score=127.49 Aligned_cols=129 Identities=18% Similarity=0.268 Sum_probs=93.2
Q ss_pred CCeEEEee-cCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEE-ee
Q psy3475 22 DLRFTSLH-SDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV-LE 98 (207)
Q Consensus 22 ~~r~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~ 98 (207)
.+|+.+.. +...+.++|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.....+....+..|+.+.|.|.+ .+
T Consensus 69 ~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g 148 (214)
T 3jz7_A 69 KGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEG 148 (214)
T ss_dssp TTTEEESCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBC
T ss_pred ccceEEeccCccCCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCC
Confidence 35555543 11224568999999999999999999874 33567788888887765444444456789999999999 77
Q ss_pred CCCCCcEEEEEeCC--EEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCe
Q psy3475 99 TPDPPSFIYWYRGA--NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160 (207)
Q Consensus 99 ~~~~~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~ 160 (207)
.|.+ .+.|++++ ..+...... ......|.|.++..+|.|.|+|.|.|..+..
T Consensus 149 ~p~~--~v~W~~~~~~~~~~~~~~~--------~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~ 202 (214)
T 3jz7_A 149 SLPL--QFEWQKLSDSQTMPTPWLA--------EMTSPVISVKNASSEYSGTYSCTVQNRVGSD 202 (214)
T ss_dssp CSSC--EEEEEECSTTCCCCGGGGG--------GTTSSEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred CCCC--EEEEEECCCCCccCcccee--------ccCCCEEEEecCCHHHCEEEEEEEEcCCCcE
Confidence 7777 89999943 333221110 1134589999999999999999999985443
No 39
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.81 E-value=1.6e-18 Score=128.21 Aligned_cols=118 Identities=20% Similarity=0.342 Sum_probs=97.3
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN 113 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~ 113 (207)
...|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++.
T Consensus 154 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~--~v~W~~~~~ 231 (284)
T 2rik_A 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPF--QVSWHKDKR 231 (284)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCC--EEEEEETTE
T ss_pred EEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCC--EEEEEECCE
Confidence 568999999999999999999874 44677788999888877666777788899999999999998877 899999999
Q ss_pred EEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 114 VVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
.+....+ +....+ .....|.|.++..+|.|.|+|.|.|..+
T Consensus 232 ~~~~~~~--~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 272 (284)
T 2rik_A 232 ELRSGKK--YKIMSE--NFLTSIHILNVDSADIGEYQCKASNDVG 272 (284)
T ss_dssp EECBTTT--EEEEEE--TTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred ECcCCCC--EEEEEc--CCEEEEEEcCCCcccCEEEEEEEEeCCC
Confidence 8876543 333322 2456899999999999999999999844
No 40
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.81 E-value=4.8e-19 Score=136.83 Aligned_cols=113 Identities=21% Similarity=0.351 Sum_probs=95.3
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV 114 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~ 114 (207)
..|.|.+++.+|+|.|+|.+.|. +.......|.|..+|.+...+....+..|+.+.|.|.+.+.|.| .+.|+++|..
T Consensus 258 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~i~W~k~g~~ 335 (384)
T 3kld_A 258 GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKP--TYRWLKNGDP 335 (384)
T ss_dssp CEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCC--EEEEEETTEE
T ss_pred cEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCC--eEEEEECCEE
Confidence 38999999999999999999985 44567788999888887777778888999999999999999888 8999999998
Q ss_pred EEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 115 VNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+....+ +.. ....|.|..+..+|+|.|+|.|.|..+
T Consensus 336 l~~~~~--~~~------~~~~L~i~~v~~~D~G~Y~C~A~N~~G 371 (384)
T 3kld_A 336 LLTRDR--IQI------EQGTLNITIVNLSDAGMYQCVAENKHG 371 (384)
T ss_dssp CCCBTT--EEE------ETTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCCCcc--EEE------eCCEEEEeecChhhCEEEEEEEEeCCc
Confidence 765433 222 124799999999999999999999844
No 41
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.81 E-value=7.7e-19 Score=124.62 Aligned_cols=154 Identities=17% Similarity=0.199 Sum_probs=98.4
Q ss_pred CeeEEccCCccceeeEEE---E--eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEe--
Q psy3475 1 VSWIRKRDLHILTVGILT---Y--TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVI-- 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~---~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~-- 71 (207)
|.|||+..+..+....+. . ...+|+.+.. ..+.++|.|.+++.+|+|.|+|.+.+... ......|.|..
T Consensus 32 v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~ 109 (210)
T 1lk3_L 32 MHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRAD 109 (210)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCC
T ss_pred EEEEEECCCCCeEEEEEccccccCCccccEEEEe--cCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCC
Confidence 579998655443222210 0 1146777654 23567899999999999999999987432 23345677754
Q ss_pred -ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec---ccceEEEEEEecccCCCe
Q psy3475 72 -SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDSG 147 (207)
Q Consensus 72 -~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g 147 (207)
+|.+...+.......|+.+.|.|.+.+.+++...+.|+++|..+.............. ....+.|.|..+..+|.|
T Consensus 110 ~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G 189 (210)
T 1lk3_L 110 AAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHN 189 (210)
T ss_dssp BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred cCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCC
Confidence 3433333332223478999999999985444348999999987653300000000000 112357999999999999
Q ss_pred EEEEEeecC
Q psy3475 148 NYTCAPSSS 156 (207)
Q Consensus 148 ~Y~C~~~n~ 156 (207)
.|+|.|.|.
T Consensus 190 ~Y~C~a~n~ 198 (210)
T 1lk3_L 190 LYTCEVVHK 198 (210)
T ss_dssp EEEEEEECT
T ss_pred cEEEEEEec
Confidence 999999997
No 42
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.81 E-value=1.4e-19 Score=128.55 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=98.6
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEe
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~ 71 (207)
|.|||+..+..+....+.+. .++|+.+..+...+.++|.|.+++.+|+|.|+|.+.+.........|.|..
T Consensus 34 v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~ 113 (210)
T 3d9a_H 34 WSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGDYWGQGTLVTVSA 113 (210)
T ss_dssp EEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSSCBCCCEEEEECC
T ss_pred EEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCcccccceEEEecc
Confidence 58999875544333222211 257888776544456799999999999999999998743333445677653
Q ss_pred ----ccceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEecccCC
Q psy3475 72 ----SKAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSD 145 (207)
Q Consensus 72 ----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d 145 (207)
+|.+...+....+..|+.+.|.|.+.+. |.| ..+.|++++..+......... .++ ....+.|.|.....+|
T Consensus 114 ~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~~~ 190 (210)
T 3d9a_H 114 AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP-VTVTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVPSSTWPS 190 (210)
T ss_dssp CCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSC-CEEEEGGGTBCTTEEECCCEE--ETTEEEEEEEEEEEGGGTTT
T ss_pred CCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCC-cEEEEeeCCcccceEEcCCcc--CCCcEEEEEEEEEcHHHcCC
Confidence 2333322323345689999999999987 543 389999987643211111111 001 1124578998888877
Q ss_pred CeEEEEEeecCC
Q psy3475 146 SGNYTCAPSSSD 157 (207)
Q Consensus 146 ~g~Y~C~~~n~~ 157 (207)
|.|+|.|.|..
T Consensus 191 -g~Y~C~a~n~~ 201 (210)
T 3d9a_H 191 -ETVTCNVAHPA 201 (210)
T ss_dssp -SCCEEEEEEGG
T ss_pred -CcEEEEEEeCC
Confidence 99999999983
No 43
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.81 E-value=3.2e-19 Score=127.69 Aligned_cols=154 Identities=18% Similarity=0.234 Sum_probs=100.5
Q ss_pred CeeEEccCCccceeeEEEEe------------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC------cee
Q psy3475 1 VSWIRKRDLHILTVGILTYT------------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP------KIS 62 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~------------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~------~~~ 62 (207)
|.|||+..+..+......+. .++|+.+..+...+.++|.|.+++.+|+|.|+|.+.+.. ...
T Consensus 34 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~ 113 (222)
T 1q9r_B 34 MSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWG 113 (222)
T ss_dssp EEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBC
T ss_pred EEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeC
Confidence 58999876544433322221 147888877665567899999999999999999998743 233
Q ss_pred eeEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEE
Q psy3475 63 IGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRL 136 (207)
Q Consensus 63 ~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 136 (207)
....|.|.. +|.+...+....+..|+.+.|.|.+.+. |.| ..+.|++++..+..... .....++ ....+.|
T Consensus 114 ~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~g~~~~~~~~--~~~~~~~~~~~~s~L 190 (222)
T 1q9r_B 114 QGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP-VTVTWNSGSLSSGVHTF--PAVLQSDLYTLSSSV 190 (222)
T ss_dssp CCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSC-CEEEEGGGTBCTTEEEE--EEEEETTEEEEEEEE
T ss_pred CceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCC-CEEEEecCCeEcceEec--cccccCCcEEEEEEE
Confidence 456777764 2333222322334579999999999986 544 38999998765422100 0000110 1123578
Q ss_pred EEEecccCCCeEEEEEeecCCC
Q psy3475 137 VISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 137 ~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
.|..+..+| |.|+|.|.|..+
T Consensus 191 ~i~~~~~~d-g~y~C~a~n~~~ 211 (222)
T 1q9r_B 191 TVPSSTWPS-ETVTCNVAHPAS 211 (222)
T ss_dssp EEETTTTTT-SCCEEEEEEGGG
T ss_pred EECchhcCC-CeEEEEEEccCC
Confidence 998888889 999999999843
No 44
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.81 E-value=1.5e-18 Score=123.71 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=97.4
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc---eeeeEEEEEEe-
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK---ISIGYKLNVVI- 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~- 71 (207)
|.|||++.+..+....+.. ..++||.+.. ..+.++|.|.+++.+|+|.|+|.+.+... ......|.|..
T Consensus 34 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~ 111 (216)
T 2xzc_L 34 VSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK--SGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRT 111 (216)
T ss_dssp CEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCC
T ss_pred EEEEEeCCCCCcEEEEEecCccCCCCCCceEEec--cCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCC
Confidence 6899987554332211100 1146777654 23567899999999999999999987532 33445677653
Q ss_pred --ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec---ccceEEEEEEecccCCC
Q psy3475 72 --SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDS 146 (207)
Q Consensus 72 --~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~ 146 (207)
+|.+...+.......|+.+.|.|.+.+.+++...+.|+++|..+.............. ....+.|.|..+..+|.
T Consensus 112 ~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~ 191 (216)
T 2xzc_L 112 VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKH 191 (216)
T ss_dssp CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTC
T ss_pred CCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCC
Confidence 3333332222222368899999999986443348999999987643300000000000 01234789999999999
Q ss_pred eEEEEEeecC
Q psy3475 147 GNYTCAPSSS 156 (207)
Q Consensus 147 g~Y~C~~~n~ 156 (207)
|.|+|.|.|.
T Consensus 192 g~Y~C~a~n~ 201 (216)
T 2xzc_L 192 KVYACEVTHQ 201 (216)
T ss_dssp CEEEEEEECT
T ss_pred CcEEEEEEcC
Confidence 9999999998
No 45
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.81 E-value=1.3e-19 Score=128.82 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=100.6
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC--ceeeeEEEEE---E
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNV---V 70 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v---~ 70 (207)
|.|||+..+..+....+.. ..++||.+.. ..+.++|.|.+++.+|+|.|+|.+.+.. .......|.| .
T Consensus 33 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~ 110 (213)
T 3r06_A 33 LNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG--SGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRAD 110 (213)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCC
T ss_pred EEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec--cCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccC
Confidence 5799986554433222110 1256787663 3357799999999999999999998743 2344566777 3
Q ss_pred eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec---ccceEEEEEEecccCCCe
Q psy3475 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDSG 147 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g 147 (207)
.+|.+...+.......|+.+.|.|.+.+.+++...+.|+++|..+.............. ....+.|.|.....+|.|
T Consensus 111 ~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g 190 (213)
T 3r06_A 111 AKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHN 190 (213)
T ss_dssp BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred CCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCC
Confidence 44444444444444568889999999997654558999999988753210000000000 112346888888888999
Q ss_pred EEEEEeecC
Q psy3475 148 NYTCAPSSS 156 (207)
Q Consensus 148 ~Y~C~~~n~ 156 (207)
.|+|.|.|.
T Consensus 191 ~YtC~v~n~ 199 (213)
T 3r06_A 191 LYTCEVTHK 199 (213)
T ss_dssp EEEEEEEET
T ss_pred eEEEEEEec
Confidence 999999998
No 46
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.81 E-value=4.1e-18 Score=121.66 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=86.6
Q ss_pred CeEEEeecC-CCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCC
Q psy3475 23 LRFTSLHSD-GSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPD 101 (207)
Q Consensus 23 ~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 101 (207)
+|+.+..+. ..+..+|.|.+++.+|+|.|+|.+.+.+.....+.|.|..++..........+..|+.+.|.|.+.+.|.
T Consensus 66 ~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~ 145 (222)
T 3sbw_C 66 QRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPK 145 (222)
T ss_dssp SSEEECHHHHTTTEEEEEESSCCGGGCEEEEEEEESSSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSC
T ss_pred CceEEccccccCCEEEEEEcCcccccCeEEEEEEEeCCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCC
Confidence 566554331 3356789999999999999999998854566677888886654322222224568999999999999887
Q ss_pred CCcEEEEEeC-CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 102 PPSFIYWYRG-ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 102 ~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
| .+.|+++ +..+..... ..................+...|.|.|+|.|.|..+.
T Consensus 146 p--~i~W~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~ 200 (222)
T 3sbw_C 146 A--EVIWTSSDHQVLSGKTT--TTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPE 200 (222)
T ss_dssp C--EEEEEETTCCEECCEEE--EEECC----CEEEEEEEEEECCTTCEEEEEEEETTTT
T ss_pred C--eEEEEECCCceecCccc--eEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccc
Confidence 7 9999997 655432211 0011000111112222244578999999999998443
No 47
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.81 E-value=4.4e-19 Score=125.60 Aligned_cols=119 Identities=23% Similarity=0.336 Sum_probs=91.7
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV 115 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~ 115 (207)
..|.|.+++.+|+|.|+|.+.+ ......+.|.|..++.....+. ..+..|+.+.|.|.+.+.+.. ..+.|++++..+
T Consensus 54 ~~L~i~~v~~~D~G~Y~C~a~n-~~~s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~-~~v~W~k~g~~~ 130 (204)
T 3sgj_C 54 SSYFIDAATVDDSGEYRCQTQL-STLSDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGKGR 130 (204)
T ss_dssp SEEEESSCCGGGCEEEEEEETT-SBCCCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCC-EEEEEEETTEEE
T ss_pred cEEEEecccccCCEEEEEEeCC-CcccccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCC-ceEEEEECCcEe
Confidence 4899999999999999999986 3456677888887775544444 667889999999999776432 289999999887
Q ss_pred EecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC----CCCeEEEEEecCC
Q psy3475 116 NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS----DGASVVVHVLNGK 169 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~----~~~~~~~~v~~~~ 169 (207)
.... ....|.|.++..+|+|.|+|.+.|. .+..+.+.|...+
T Consensus 131 ~~~~------------~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~ 176 (204)
T 3sgj_C 131 KYFH------------HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL 176 (204)
T ss_dssp EEEE------------ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred eccc------------CCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence 5321 2357999999999999999999994 4556677776544
No 48
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.81 E-value=8.9e-19 Score=123.90 Aligned_cols=122 Identities=18% Similarity=0.296 Sum_probs=88.8
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC--ceeeeEEEEEEeccc--eEecCcceEEecCCcEEEEEEEe
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVISKA--KIIGNSELYIKSGSDINLTCVVL 97 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~~--~~~~~~~~~~~~g~~~~l~C~~~ 97 (207)
.+|+.+..+. +|.|.+++.+|+|.|+|.+.+.. .....+.|.|..++. .+...... +..|+.+.|.|.+.
T Consensus 62 ~~r~~~~~~~-----~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~~ 135 (208)
T 3r4d_A 62 SGREIIYSNG-----SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCLSN 135 (208)
T ss_dssp CSSEEECTTS-----CEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEECS
T ss_pred cceeEEecCC-----eEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEECC
Confidence 3566654322 69999999999999999998752 345666777776532 22222222 77899999999998
Q ss_pred eCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 98 ETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 98 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+.+ + .+.|++++..+....+ +... .....|.|.++..+|.|.|+|.|.|..+
T Consensus 136 ~~p-p--~i~W~~~g~~l~~~~~--~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g 187 (208)
T 3r4d_A 136 DIG-A--NIQWLFNSQSLQLTER--MTLS----QNNSILRIDPIKREDAGEYQCEISNPVS 187 (208)
T ss_dssp CTT-C--EEEEEETTEECCCCSS--EEEE----TTTTEEEESSCCGGGCEEEEEEEECTTC
T ss_pred CCC-C--ceEEEECCEeCCCCCC--eEEc----CCCCEEEEeccCHHhCeEEEEEEecCCC
Confidence 854 5 8999999988765433 2222 1236899999999999999999999843
No 49
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.81 E-value=3.1e-18 Score=128.03 Aligned_cols=128 Identities=27% Similarity=0.459 Sum_probs=96.7
Q ss_pred CeEEEeecCCCCcEEEEEcccCC-CCCeEEEEEEecC-CceeeeEEEEEEec-------cceEecCcceEEecCCcEEEE
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQL-RDSGTYECQVSTE-PKISIGYKLNVVIS-------KAKIIGNSELYIKSGSDINLT 93 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~-~~~~~~~~l~v~~~-------~~~~~~~~~~~~~~g~~~~l~ 93 (207)
.++.+..........|.|.+++. +|+|.|+|.+.+. +.....+.|.|..+ |.+...+....+..|+.+.|.
T Consensus 50 ~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~ 129 (304)
T 2yd9_A 50 QRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATML 129 (304)
T ss_dssp TTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEC
T ss_pred CceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEE
Confidence 44444433333457899999998 9999999999874 34567788888875 344455666778899999999
Q ss_pred EEEeeCCCCCcEEEEEeCCEEEEecCC-CceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 94 CVVLETPDPPSFIYWYRGANVVNYSQR-GGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 94 C~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
|.+.+.|.+ .+.|++++..+..... .++... ....|.|.++..+|.|.|+|.+.|..
T Consensus 130 C~~~g~p~~--~v~W~k~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~ 187 (304)
T 2yd9_A 130 CAASGNPDP--EITWFKDFLPVDPSASNGRIKQL-----RSGALQIESSEETDQGKYECVATNSA 187 (304)
T ss_dssp CEEECSSCC--EEEEEETTEECCGGGGTTSEEEC-----TTSCEEECSCCGGGCEEEEEEEEETT
T ss_pred EECccCCCC--eEEEEECCEECcCCCCcceEEeC-----CCeEEEEccCCcccCEEEEEEEEeCC
Confidence 999998877 8999999988765422 122211 23489999999999999999999983
No 50
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.80 E-value=2.9e-19 Score=127.63 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=96.8
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-----ceeeeE
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-----KISIGY 65 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~ 65 (207)
|.|||+..+..+........ .++|+.+..+...+.++|.|.+++.+|+|.|+|.+.+.. ......
T Consensus 34 v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~ 113 (219)
T 1c1e_H 34 MNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGT 113 (219)
T ss_dssp EEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCE
T ss_pred EEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCce
Confidence 58999865544333222221 247888776544457799999999999999999998753 223456
Q ss_pred EEEEEec----cceEecCcceEEecCCcEEEEEEEee-CCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEe
Q psy3475 66 KLNVVIS----KAKIIGNSELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISK 140 (207)
Q Consensus 66 ~l~v~~~----~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 140 (207)
.|.|... |.+...+....+..|+.+.|.|.+.+ .|.|. .+.|++++..+......... ........+.|.|..
T Consensus 114 ~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~-~v~W~~~g~~~~~~~~~~~~-~~~~~~~~s~L~i~~ 191 (219)
T 1c1e_H 114 SLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPV-TVTWNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVPS 191 (219)
T ss_dssp EEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCC-EEEEGGGTBCTTEEECCCEE-SSSCEEEEEEEEEES
T ss_pred EEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCe-EEEEEeCCcccceEecCCcc-cCCeEEEEEEEEEec
Confidence 7777653 33322233334567999999999998 56543 79999988653211110000 000011235688844
Q ss_pred cccCCCeEEEEEeecCC
Q psy3475 141 AVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 141 ~~~~d~g~Y~C~~~n~~ 157 (207)
...|.|.|+|.|.|..
T Consensus 192 -~~~d~g~Y~C~a~n~~ 207 (219)
T 1c1e_H 192 -SPRPSETVTCNVAHPA 207 (219)
T ss_dssp -SSTTTSCCEEEEEEGG
T ss_pred -ccCCCCEEEEEEEeCC
Confidence 4446699999999973
No 51
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.80 E-value=2.5e-18 Score=124.72 Aligned_cols=154 Identities=22% Similarity=0.314 Sum_probs=99.5
Q ss_pred CeeEEccCCccceeeEEE---E--eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEecc
Q psy3475 1 VSWIRKRDLHILTVGILT---Y--TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISK 73 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~---~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~ 73 (207)
|.|||+.++..+....+. . ..++||.+..+ .+.++|.|.+++.+|+|.|+|.+.+... ......|.|..++
T Consensus 33 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~ 110 (242)
T 2znx_A 33 LHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGS--GTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGG 110 (242)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE--TTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---
T ss_pred EEEEEeCCCCCceEEEEeccccCCCCCCCEEEecC--CCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCC
Confidence 579998755433322210 0 12568876542 3567899999999999999999987432 3345677776654
Q ss_pred c-------------eEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEE---Ee-----------cCCCceE
Q psy3475 74 A-------------KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVV---NY-----------SQRGGIS 124 (207)
Q Consensus 74 ~-------------~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~---~~-----------~~~~~~~ 124 (207)
. .+..+....+..|+.++|.|.+.+.+.+...+.|+++ +..+ .. ....++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~ 190 (242)
T 2znx_A 111 GSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRIS 190 (242)
T ss_dssp ------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEE
T ss_pred CCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEE
Confidence 2 2333344568899999999999987532227999983 2221 11 0123344
Q ss_pred EEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 125 VVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 125 ~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
...+.......|.|.+++.+|+|.|+|.+.|.
T Consensus 191 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 191 ITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp EEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred EEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 33322234568999999999999999999985
No 52
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.80 E-value=1.8e-18 Score=128.35 Aligned_cols=127 Identities=22% Similarity=0.347 Sum_probs=98.3
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC--ceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeC
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLET 99 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 99 (207)
+.++.+..+. ....+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..++.+...+....+..|+.+.|.|.+.+.
T Consensus 49 ~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~ 127 (291)
T 1qz1_A 49 QQRISVVWND-DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127 (291)
T ss_dssp CSSEEEEEEE-TTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECS
T ss_pred CceEEEEEcC-CCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccC
Confidence 3455544322 245689999999999999999999753 2456777888877777777777888999999999999998
Q ss_pred CCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 100 PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 100 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|.+ .+.|++++..+......++... ....|.|.++..+|.|.|+|.+.|.
T Consensus 128 p~~--~v~W~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~ 177 (291)
T 1qz1_A 128 LPP--TIIWKHKGRDVILKKDVRFIVL-----SNNYLQIRGIKKTDEGTYRCEGRIL 177 (291)
T ss_dssp SCC--EEEEEETTSCSSTTCCTTEEEC-----TTSCEEETTCCGGGCEEEEEEEEEG
T ss_pred CCC--EEEEEECCEEcccCCCceEEEc-----cCCcEEEccCccccCeEEEEEEEec
Confidence 777 8999999887654433333222 2347999999999999999999986
No 53
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.80 E-value=7e-19 Score=122.48 Aligned_cols=124 Identities=22% Similarity=0.464 Sum_probs=92.7
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-c--eeeeEEEEEEeccceEecCc--ceEEecCCcEEEEEEE
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-K--ISIGYKLNVVISKAKIIGNS--ELYIKSGSDINLTCVV 96 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~l~v~~~~~~~~~~~--~~~~~~g~~~~l~C~~ 96 (207)
+.++....+. +|.|.+++.+|+|.|+|.+.+.. . ......+.|..+|.....+. ...+..|+.+.|.|.+
T Consensus 48 ~~~~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~ 122 (189)
T 2v5t_A 48 DNRFAMLANN-----NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA 122 (189)
T ss_dssp CTTEEECTTS-----CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEE
T ss_pred CCeEEEecCC-----CEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEE
Confidence 4566654333 69999999999999999998743 2 23556677777766554433 3456689999999999
Q ss_pred eeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 97 ~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
.+.|.+ .+.|++++..+..... +... .....|.|.++..+|.|.|+|.|.|..+
T Consensus 123 ~g~p~~--~v~W~~~g~~~~~~~~--~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 176 (189)
T 2v5t_A 123 SGSPEP--AISWFRNGKLIEENEK--YILK----GSNTELTVRNIINSDGGPYVCRATNKAG 176 (189)
T ss_dssp EEESCC--EEEEEETTEECCCSSS--EEEE----TTTTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred ccCCCC--eEEEEECCEECcCCCc--EEEe----cCCCEEEEcCCChhhCeeEEEEEEeCCC
Confidence 998777 8999999998765433 2211 1345799999999999999999999833
No 54
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.80 E-value=2.3e-19 Score=128.85 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=99.0
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC------c---e
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP------K---I 61 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~------~---~ 61 (207)
|.|||+.++..+....+... .++||.+..+...+.++|.|.+++.+|+|.|+|.+.+.. . .
T Consensus 34 v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~ 113 (225)
T 1op3_H 34 MNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAW 113 (225)
T ss_dssp EEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEE
T ss_pred EEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCccccccceee
Confidence 58999876544443332221 247898877655567899999999999999999998743 1 2
Q ss_pred eeeEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEE
Q psy3475 62 SIGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRL 136 (207)
Q Consensus 62 ~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 136 (207)
.....|.|.. +|.+........+..|+.+.|.|.+.+..+....+.|++++..+......... ..++ ....+.|
T Consensus 114 ~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~-~~~g~~~~~s~L 192 (225)
T 1op3_H 114 GPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVL-QSSGLYSLSSVV 192 (225)
T ss_dssp CCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEE-CTTSCEEEEEEE
T ss_pred cCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCcee-CCCCCEEEEEEE
Confidence 2456788875 23222222222245799999999999873322389999987642110000000 0000 1123578
Q ss_pred EEEecccCCCeEEEEEeecC
Q psy3475 137 VISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 137 ~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.|.....+| |.|+|.|.|.
T Consensus 193 ~i~~~~~~~-g~Y~C~a~n~ 211 (225)
T 1op3_H 193 TVPSSSLGT-QTYICNVNHK 211 (225)
T ss_dssp EEEGGGTTC-CCCCEEEEEG
T ss_pred EEechhcCC-CcEEEEEEcC
Confidence 998888888 9999999997
No 55
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.80 E-value=2.2e-18 Score=132.91 Aligned_cols=107 Identities=24% Similarity=0.354 Sum_probs=93.2
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV 115 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~ 115 (207)
.|.|.+++.+|+|.|+|.+.|. +.....+.|.|..++.....+....+..|+.+.|.|.+.+.|.+ .+.|+++|..+
T Consensus 271 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~~g~~i 348 (388)
T 2v5m_A 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK--TVSWMKDGKAI 348 (388)
T ss_dssp EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCC--EEEEEETTEEC
T ss_pred EEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCC--eEEEEECCEEC
Confidence 8999999999999999999984 44677788999988877777888888999999999999999888 89999999887
Q ss_pred EecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 116 NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
... ...|.|.++..+|.|.|+|.|.|..+.
T Consensus 349 ~~~--------------~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 378 (388)
T 2v5m_A 349 GHS--------------ESVLRIESVKKEDKGMYQCFVRNDRES 378 (388)
T ss_dssp SCC--------------SSEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred ccC--------------CCEEEEecCChhhCEEEEEEEEcCCCc
Confidence 432 347999999999999999999998443
No 56
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.80 E-value=2.6e-18 Score=123.99 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=96.9
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec-CC------ceeee
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST-EP------KISIG 64 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~~------~~~~~ 64 (207)
|.|||+.++..+....+... ..+||.+..+...+.++|.|.+++.+|+|.|+|.+.+ .+ .....
T Consensus 34 v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~ 113 (232)
T 1dn0_B 34 WSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQG 113 (232)
T ss_dssp EEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCC
T ss_pred EEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccc
Confidence 58999986655444333221 2478988776656788999999999999999999973 11 12345
Q ss_pred EEEEEEec----cceEecCcceEEecC-CcEEEEEEEeeCCCCCcEEEEEe-CCEEEEecCCCceEEEEec-ccceEEEE
Q psy3475 65 YKLNVVIS----KAKIIGNSELYIKSG-SDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEK-QTRTSRLV 137 (207)
Q Consensus 65 ~~l~v~~~----~~~~~~~~~~~~~~g-~~~~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 137 (207)
..|.|... |.+........+..| +.+.|.|.+.+..+....+.|++ +|..+....... .....+ ....+.|.
T Consensus 114 ~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~-~~~~~~~~~~~s~L~ 192 (232)
T 1dn0_B 114 TLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFP-SVLRGGKYAATSQVL 192 (232)
T ss_dssp EEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECC-CEEETTEEEEEEEEE
T ss_pred eEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECC-ccccCCcEEEEEEEE
Confidence 67887651 222211112223467 89999999998733234899999 887764310000 000000 11235688
Q ss_pred EEeccc--CCCeEEEEEeecCCC
Q psy3475 138 ISKAVT--SDSGNYTCAPSSSDG 158 (207)
Q Consensus 138 i~~~~~--~d~g~Y~C~~~n~~~ 158 (207)
|..... +|.|.|+|.|.|..+
T Consensus 193 i~~~~~~~~d~g~ytC~v~n~~~ 215 (232)
T 1dn0_B 193 LPSKDVMAGTDEHVVCKVQHPNG 215 (232)
T ss_dssp ECTTCC---CCCEEEEEEECTTC
T ss_pred EcHHHhcccCCCeEEEEEEeCCC
Confidence 887776 789999999999844
No 57
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.80 E-value=1.9e-18 Score=125.60 Aligned_cols=154 Identities=19% Similarity=0.287 Sum_probs=100.2
Q ss_pred CeeEEccCCccceeeEEE---E--eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEecc
Q psy3475 1 VSWIRKRDLHILTVGILT---Y--TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISK 73 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~---~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~ 73 (207)
|.|||+.++..+...... . ...+||.+.. ..+.++|.|.+++.+|+|.|+|.+.+... ......|.|..++
T Consensus 38 v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~ 115 (247)
T 1svz_A 38 LEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGG 115 (247)
T ss_dssp EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---
T ss_pred EEEEEECCCCCceEEEEEecccCCCCCCcEEecc--CCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCc
Confidence 579998765433322210 0 0146887654 23567899999999999999999987432 3345677776542
Q ss_pred -------------ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC--EE---EE-ec-----------CCCce
Q psy3475 74 -------------AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA--NV---VN-YS-----------QRGGI 123 (207)
Q Consensus 74 -------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~--~~---~~-~~-----------~~~~~ 123 (207)
..+..+....+..|+.++|.|.+.+.+.+...+.|++++ .. +. .. ...++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 195 (247)
T 1svz_A 116 GSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRF 195 (247)
T ss_dssp ------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSE
T ss_pred cccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcE
Confidence 233344455688999999999999875322379999842 21 11 10 12344
Q ss_pred EEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 124 SVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 124 ~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
....+.......|.|.+++.+|+|.|+|.+.|.
T Consensus 196 ~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 196 AFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 443322334578999999999999999999985
No 58
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.80 E-value=7.1e-18 Score=117.62 Aligned_cols=129 Identities=24% Similarity=0.310 Sum_probs=94.2
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCC
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETP 100 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~ 100 (207)
+.++.+.... .+|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|..... ....+..|+.+.|.|.+.+.|
T Consensus 48 ~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~-~~~~~~~g~~v~l~C~~~~~p 122 (192)
T 2va4_A 48 NEKYILKGSN----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQL-KNETTYENGQVTLVCDAEGEP 122 (192)
T ss_dssp SSSEEEETTT----TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE-CCEEECTTSEEEEEEEEEEES
T ss_pred CccEEEeCCe----eEEEEecCChhcCcEEEEEEEccccccceEEEEEEEccCccccc-CcceEEeCCeEEEEEEecCCC
Confidence 3555544333 38999999999999999999874 33556778888877765443 345567799999999999988
Q ss_pred CCCcEEEEEeC--CEEEEec---CCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 101 DPPSFIYWYRG--ANVVNYS---QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 101 ~~~~~~~W~~~--~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
.+ .+.|+++ +..+... ...++.... ......|.|.++..+|.|.|+|.|.|..+.
T Consensus 123 ~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 182 (192)
T 2va4_A 123 IP--EITWKRAVDGFTFTEGDKSLDGRIEVKG--QHGSSSLHIKDVKLSDSGRYDCEAASRIGG 182 (192)
T ss_dssp CC--EEEEEETTTTEEECTTCBCTTSCEEEEE--ETTEEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred CC--cEEEEeCCCCceeeccccccCCcEEEee--ccCceEEEEecCCcccCEEEEEEEEecCCc
Confidence 77 8999997 5555431 122233322 224578999999999999999999998443
No 59
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.80 E-value=5.7e-18 Score=118.65 Aligned_cols=119 Identities=18% Similarity=0.316 Sum_probs=93.1
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA 112 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~ 112 (207)
..+|.|.+++.+|+|.|+|.+.+... ....+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.|. .+.|++++
T Consensus 67 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~v~W~~~~ 145 (195)
T 2c5d_C 67 VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPV-DLLWLQDA 145 (195)
T ss_dssp EEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCC-EEEEEESS
T ss_pred ccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCC-EEEEEECC
Confidence 35899999999999999999997533 2445888888888777777778888999999999999986553 68999998
Q ss_pred EEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC----CeEEEEE
Q psy3475 113 NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG----ASVVVHV 165 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~----~~~~~~v 165 (207)
..+...... .....|.|.+++ |+|.|+|.|.|..+ ..+.|.|
T Consensus 146 ~~~~~~~~~---------~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 146 VPLATAPGH---------GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp CBSSSSTTS---------SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EeccCCCCc---------CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 877554321 145688998887 78999999999832 3445544
No 60
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.80 E-value=4.5e-18 Score=125.77 Aligned_cols=154 Identities=22% Similarity=0.344 Sum_probs=100.7
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEecc
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISK 73 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~ 73 (207)
|.|||+..+..+....... ..++||.+..+ .+.++|.|.+++.+|+|.|+|.+.+... ......|.|..++
T Consensus 44 i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~ 121 (276)
T 3auv_A 44 VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS--GTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGG 121 (276)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE--TTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC----
T ss_pred EEEEEECCCCCCEEEEEEcCccCCCCCCCEEEecc--CCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCC
Confidence 5799987654433222100 12568876643 3567899999999999999999987432 3344667776542
Q ss_pred --------------ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC--EE---EEe------------cCCCc
Q psy3475 74 --------------AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA--NV---VNY------------SQRGG 122 (207)
Q Consensus 74 --------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~--~~---~~~------------~~~~~ 122 (207)
..+..+....+..|+.+.|.|.+.+.+.+...+.|++++ .. +.. ....+
T Consensus 122 ~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r 201 (276)
T 3auv_A 122 GGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGR 201 (276)
T ss_dssp -------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTT
T ss_pred CccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCc
Confidence 223345567788999999999999876322289999852 21 110 11234
Q ss_pred eEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 123 ISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 123 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+....+.......|.|.+++.+|+|.|+|.+.|.
T Consensus 202 ~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 202 FTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF 235 (276)
T ss_dssp EEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence 4444332234568999999999999999999996
No 61
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.80 E-value=8.4e-19 Score=126.39 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=99.1
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC---C--ceeeeEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE---P--KISIGYK 66 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~--~~~~~~~ 66 (207)
|+|||+.++..+....+... .++||.+..+.+.+.++|.|.+++.+|+|.|.|.+.+. . .......
T Consensus 35 v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~ 114 (230)
T 1ypz_F 35 IHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTK 114 (230)
T ss_dssp EEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEECCTTTCCCCEECSCEE
T ss_pred EEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChhhCEEEEEEEECCCCCcccccCCCEE
Confidence 58999987655543333211 35889887766557889999999999999999999863 1 1234567
Q ss_pred EEEEe---------ccc-eEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe-CCEEEEecCCCceEEEEec-ccceE
Q psy3475 67 LNVVI---------SKA-KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEK-QTRTS 134 (207)
Q Consensus 67 l~v~~---------~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~-~~~~~ 134 (207)
|.|.. +|. .+..+....+..|+.+.|.|.+.+..+....+.|++ +|..+.......+. ..++ ....+
T Consensus 115 L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~-~~~~~~~~~s 193 (230)
T 1ypz_F 115 LIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTL-KTNDTYMKFS 193 (230)
T ss_dssp EEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCE-EETTEEEEEE
T ss_pred EEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEEEccCCeEccccccceee-cCCCCEEEEE
Confidence 88862 222 222233333456889999999998733223899999 77655432111111 1111 11235
Q ss_pred EEEEEecccCCCeEEEEEeecC
Q psy3475 135 RLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 135 ~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.|.|..... + |.|+|.+.|.
T Consensus 194 ~L~i~~~~~-~-~~ytC~v~~~ 213 (230)
T 1ypz_F 194 WLTVPERAM-G-KEHRCIVKHE 213 (230)
T ss_dssp EEEECGGGT-T-SCEEEEEECS
T ss_pred EEEEEhhhC-C-CEEEEEEEEC
Confidence 688877765 4 9999999998
No 62
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.80 E-value=1.9e-18 Score=125.01 Aligned_cols=154 Identities=18% Similarity=0.359 Sum_probs=103.1
Q ss_pred CeeEEccCCccceeeEEE---E--eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEecc
Q psy3475 1 VSWIRKRDLHILTVGILT---Y--TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISK 73 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~---~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~ 73 (207)
|.|||+..+..+...... . ..++||.+.. ..+.++|.|.+++.+|+|.|+|.+.+... ......|.|..++
T Consensus 37 i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~ 114 (240)
T 1moe_A 37 LHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGG 114 (240)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCS
T ss_pred EEEEEECCCCCceEEEEEecccCcCCCccEEEEe--cCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCC
Confidence 579998654433322110 0 1246888764 23577899999999999999999987432 4456678877643
Q ss_pred ------ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEEE----ec-----------CCCceEEEEecc
Q psy3475 74 ------AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVVN----YS-----------QRGGISVVTEKQ 130 (207)
Q Consensus 74 ------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~~----~~-----------~~~~~~~~~~~~ 130 (207)
..+..+....+..|+.+.|.|.+.+.+.+...+.|+++ +..+. .. ...++....+..
T Consensus 115 ~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 194 (240)
T 1moe_A 115 SGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTS 194 (240)
T ss_dssp CCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETT
T ss_pred CCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEccc
Confidence 23444666778899999999999988643337999984 22110 00 122344333222
Q ss_pred cceEEEEEEecccCCCeEEEEEeecC
Q psy3475 131 TRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 131 ~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.....|.|.+++.+|+|.|+|.|.+.
T Consensus 195 ~~~~~L~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 195 SNTAYLQLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEECST
T ss_pred CCEEEEEECcCCHHHCEEEEEEEEec
Confidence 34578999999999999999999853
No 63
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.80 E-value=5.6e-19 Score=130.96 Aligned_cols=154 Identities=17% Similarity=0.138 Sum_probs=103.3
Q ss_pred CeeEEccCCccceeeEEEE-e---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC--------C--c
Q psy3475 1 VSWIRKRDLHILTVGILTY-T---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--------P--K 60 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--------~--~ 60 (207)
|.|||+.++..+....... . .++||.+..+...+.++|.|.+++.+|+|.|+|.+.+. . .
T Consensus 34 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~ 113 (280)
T 3fku_X 34 ISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDH 113 (280)
T ss_dssp EEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCE
T ss_pred EEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCccccccccccE
Confidence 5799987665544433322 1 14688888766677889999999999999999999864 1 1
Q ss_pred eeeeEEEEEEe---------------ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe--CCEEEEe------
Q psy3475 61 ISIGYKLNVVI---------------SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR--GANVVNY------ 117 (207)
Q Consensus 61 ~~~~~~l~v~~---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~--~~~~~~~------ 117 (207)
......|.|.. ++.+...+. ..+.+|+.++|.|.+.+...+...+.|++ .+..+..
T Consensus 114 ~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~ 192 (280)
T 3fku_X 114 WGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNN 192 (280)
T ss_dssp ECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTC
T ss_pred ECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEecc
Confidence 33455677765 233333334 77889999999999988432222789987 2222211
Q ss_pred ----cCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 118 ----SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 118 ----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
....++.... ......|.|.+++.+|+|.|+|.+.+..
T Consensus 193 ~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 193 DRPSGISERFSASR--SGNTASLTITGLQPEDEADYYCSTWDSS 234 (280)
T ss_dssp CCCSSSCTTEEEEE--ETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred ccCCCCCCCEEEEc--cCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 0112333332 2245679999999999999999998864
No 64
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.80 E-value=1.8e-18 Score=125.98 Aligned_cols=153 Identities=20% Similarity=0.369 Sum_probs=100.5
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEec-
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVIS- 72 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~- 72 (207)
|.|||+..+..+....... ..++||.+... .+.++|.|.+++.+|+|.|+|.+.+... ......|.|..+
T Consensus 36 i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~ 113 (250)
T 3esu_F 36 LNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGS--GTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGG 113 (250)
T ss_dssp EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE--TTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---
T ss_pred EEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCC--CCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCC
Confidence 5799987654433322111 11467765443 3577899999999999999999987432 334456766543
Q ss_pred ------------------cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEEEe---------------
Q psy3475 73 ------------------KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVVNY--------------- 117 (207)
Q Consensus 73 ------------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~~~--------------- 117 (207)
+..+..+....+..|+.+.|.|.+.+.+.+...+.|+++ +..+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~ 193 (250)
T 3esu_F 114 GGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNG 193 (250)
T ss_dssp ---------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECG
T ss_pred CcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCc
Confidence 223344566778899999999999887632338999985 332211
Q ss_pred cCCCceEEEEecccceEEEEEEecccCCCeEEEEEeec
Q psy3475 118 SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155 (207)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n 155 (207)
....++....+.......|.|.+++.+|+|.|+|.+.+
T Consensus 194 ~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 194 KFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp GGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred cccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 11234444433334456899999999999999999997
No 65
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.80 E-value=7.9e-19 Score=124.71 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=98.1
Q ss_pred CeeEEccCCccceeeEEE---E--eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEE---
Q psy3475 1 VSWIRKRDLHILTVGILT---Y--TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVV--- 70 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~---~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~--- 70 (207)
|.|||+..+..+....+. . ...+||.+... .+.++|.|.+++.+|+|.|+|.+.+... ......|.|.
T Consensus 35 v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~ 112 (212)
T 1q0x_L 35 ANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI--GDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQP 112 (212)
T ss_dssp CEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEE--TTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSC
T ss_pred EEEEEeCCCCCceEEEEcCcccCCcccccEEEEee--CCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCC
Confidence 689998654333221110 0 12467776542 3467899999999999999999987433 2344566663
Q ss_pred -eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec---ccceEEEEEEecccCCC
Q psy3475 71 -ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDS 146 (207)
Q Consensus 71 -~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~ 146 (207)
.+|.+...+.......|+.+.|.|.+.+.+++...+.|+++|..+...... .....+. ....+.|.|.....+|.
T Consensus 113 ~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~-~~~~~~~~g~~~~~s~L~i~~~~~~d~ 191 (212)
T 1q0x_L 113 KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMET-TQPSKQSNNKYMASSYLTLTARAWERH 191 (212)
T ss_dssp CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE-CCCEECTTSCEEEEEEEEEEHHHHTTC
T ss_pred CCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeec-CCceeCCCCCEEEEEEEEEcHHHccCC
Confidence 233333323322334688999999999875444489999999887543110 0001111 11235789999999999
Q ss_pred eEEEEEeecC
Q psy3475 147 GNYTCAPSSS 156 (207)
Q Consensus 147 g~Y~C~~~n~ 156 (207)
|.|+|.|.|.
T Consensus 192 g~Y~C~a~n~ 201 (212)
T 1q0x_L 192 SSYSCQVTHE 201 (212)
T ss_dssp CEEEEEEEET
T ss_pred CcEEEEEEeC
Confidence 9999999997
No 66
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.79 E-value=1.1e-18 Score=126.78 Aligned_cols=153 Identities=19% Similarity=0.168 Sum_probs=98.2
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC------c--ee
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP------K--IS 62 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~------~--~~ 62 (207)
|.|||+.++..+....+... .++||.+..+.+.+.++|.|.+++.+|+|.|+|.+.+.. . ..
T Consensus 35 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~ 114 (242)
T 1hxm_B 35 VYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFG 114 (242)
T ss_dssp EEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEEC
T ss_pred EEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCcccCEEEEEeeecCCccccccceeEc
Confidence 58999876544443333221 358898876665578899999999999999999998642 1 22
Q ss_pred eeEEEEEEec-------cc-eEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCE-EEEecCCCceEEEEec-ccc
Q psy3475 63 IGYKLNVVIS-------KA-KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN-VVNYSQRGGISVVTEK-QTR 132 (207)
Q Consensus 63 ~~~~l~v~~~-------~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~-~~~ 132 (207)
....|.|... |. .+..+....+..|+.+.|.|.+.+..+....+.|++++. .+.......... .++ ...
T Consensus 115 ~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~-~~~~~~~ 193 (242)
T 1hxm_B 115 PGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMK-TNDTYMK 193 (242)
T ss_dssp CCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEE-CSSSEEE
T ss_pred CcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceec-CCCcEEE
Confidence 4567888752 21 222233334456999999999998733223899999876 443221111111 111 112
Q ss_pred eEEEEEEecccCCCeEEEEEeecC
Q psy3475 133 TSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 133 ~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.+.|.|..... + |.|+|.+.|.
T Consensus 194 ~s~L~i~~~~~-~-g~y~C~v~n~ 215 (242)
T 1hxm_B 194 FSWLTVPEKSL-D-KEHRCIVRHE 215 (242)
T ss_dssp EEEEEECTGGG-G-SCEEEEEEET
T ss_pred EEEEEEccccC-C-CEEEEEEEeC
Confidence 35688876664 4 9999999998
No 67
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.79 E-value=8.2e-18 Score=134.73 Aligned_cols=154 Identities=14% Similarity=0.185 Sum_probs=102.0
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC----ceeeeEEEEEE-
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP----KISIGYKLNVV- 70 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~- 70 (207)
|.|||++.+..+....+.. ..++|+... ...+.++|.|.+++.+|+|.|+|.+.+.. .....+.|.|.
T Consensus 32 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~ 109 (523)
T 2rcj_C 32 VNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGS--KSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLG 109 (523)
T ss_pred EEEEEeCCCCCcEEEEEeccccCcccCCcEEEe--cCCCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEecc
Confidence 5799986544333222211 124677733 33356789999999999999999998742 13355677773
Q ss_pred ---eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEE-Eec-ccceEEEEEEecccCC
Q psy3475 71 ---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV-TEK-QTRTSRLVISKAVTSD 145 (207)
Q Consensus 71 ---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~i~~~~~~d 145 (207)
.+|.+...+.......|+.+.|.|.+.+.+++...+.|+++|..+........... .++ ....+.|.|.++..+|
T Consensus 110 ~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d 189 (523)
T 2rcj_C 110 QPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKS 189 (523)
T ss_pred CCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCC
Confidence 34544444555556679999999999988655448999999887653221000000 000 1112579999999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
.|.|+|.|.|.
T Consensus 190 ~G~Y~C~a~n~ 200 (523)
T 2rcj_C 190 HRSYSCQVTHE 200 (523)
T ss_pred CceEEEEEEec
Confidence 99999999998
No 68
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.79 E-value=6.2e-18 Score=123.81 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=98.7
Q ss_pred CeeEEccCCccceeeEEEEeC----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC----ceeeeEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP----KISIGYK 66 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~ 66 (207)
|.|||+.++..+......... .+|+....+...+.++|.|.+++.+|+|.|+|.+.+.. .......
T Consensus 34 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~ 113 (259)
T 3omz_A 34 IHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTS 113 (259)
T ss_dssp EEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEE
T ss_pred EEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCcccCEEEEEEEeeCCccccEECCCCE
Confidence 579998766555444333210 12333333444567789999999999999999998743 2345567
Q ss_pred EEEEec-----------------cceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCC--EE---EEe------
Q psy3475 67 LNVVIS-----------------KAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGA--NV---VNY------ 117 (207)
Q Consensus 67 l~v~~~-----------------~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~--~~---~~~------ 117 (207)
|.|..+ +.+...+....+..|+.++|.|.+.+. +.+ .+.|++.. .. +..
T Consensus 114 l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~ 191 (259)
T 3omz_A 114 LVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSY--YIFWYKRLPSKEMIFLIRQGSDEQ 191 (259)
T ss_dssp EEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSC--EEEEEEECTTCCEEEEEEEETTSC
T ss_pred EEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCc--eEEEeeeCCCCCcEEEEEECCcCC
Confidence 777763 233444666788999999999988875 444 89999732 11 111
Q ss_pred -cCCCceEEEEecccceEEEEEEecccCCCeEEEEEeec
Q psy3475 118 -SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155 (207)
Q Consensus 118 -~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n 155 (207)
....++....+.......|.|.+++.+|+|.|.|.+.+
T Consensus 192 ~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 192 NAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE 230 (259)
T ss_dssp CCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred cccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence 00122332221223446799999999999999999974
No 69
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.79 E-value=2.2e-18 Score=125.72 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=98.5
Q ss_pred CeeEEccCCccceeeEEE---Ee--CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEe--
Q psy3475 1 VSWIRKRDLHILTVGILT---YT--NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVI-- 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~---~~--~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~-- 71 (207)
|.|||++++..+....+. .. .++||.+.. ..+.++|.|.+++.+|+|.|+|.+.+... ......|.|..
T Consensus 75 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~ 152 (254)
T 2c1o_A 75 LNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSG--SGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD 152 (254)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC
T ss_pred eEEEEeCCCCCceEEEEeccccCCCccceEEEec--CCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC
Confidence 579998765444322211 01 136787654 23567899999999999999999987432 23344666653
Q ss_pred -ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec---ccceEEEEEEecccCCCe
Q psy3475 72 -SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDSG 147 (207)
Q Consensus 72 -~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g 147 (207)
+|.+...+.......|+.+.|.|.+.+.+++...+.|+++|..+............+. ....+.|.|.++..+|.|
T Consensus 153 ~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G 232 (254)
T 2c1o_A 153 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN 232 (254)
T ss_dssp BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred CCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCC
Confidence 3433332332223467899999999986544347999999987654300000000000 012468999999999999
Q ss_pred EEEEEeecC
Q psy3475 148 NYTCAPSSS 156 (207)
Q Consensus 148 ~Y~C~~~n~ 156 (207)
.|+|.|.|.
T Consensus 233 ~Y~C~a~n~ 241 (254)
T 2c1o_A 233 SYTCEATHK 241 (254)
T ss_dssp EEEEEEECT
T ss_pred eEEEEEEcC
Confidence 999999998
No 70
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.79 E-value=2.2e-18 Score=118.99 Aligned_cols=106 Identities=24% Similarity=0.338 Sum_probs=84.1
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV 115 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~ 115 (207)
..|.|.+++.+|+|.|+|.+.+. .....+.|.|..++.... +....+..|+.+.|.|.+.+.+.+ ..+.|++++..+
T Consensus 54 ~~L~i~~~~~~d~G~Y~C~~~n~-~~s~~~~l~V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~-~~~~W~k~g~~~ 130 (175)
T 1fnl_A 54 SSYFIDAATVNDSGEYRCQTNLS-TLSDPVQLEVHIGWLLLQ-APRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGKDR 130 (175)
T ss_dssp SEEEESSCCGGGCEEEEEECSSS-CCCCCEEEEEECSSEEEE-CSCSEEETTCCEEEEEEECTTCCC-EEEEEEETTEEE
T ss_pred eEEEEeCCCcccCEEEEEEeeCC-cccccEEEEEeCCCceee-CCCceecCCCCEEEEEEcCCCCCc-eEEEEEECCeEc
Confidence 38999999999999999999863 335667888876554433 344667899999999999887544 389999999987
Q ss_pred EecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 116 NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.... ....|.|.+++.+|.|.|+|.+.|.
T Consensus 131 ~~~~------------~~~~L~i~~v~~~d~G~Y~C~a~n~ 159 (175)
T 1fnl_A 131 KYFH------------HNSDFHIPKATLKDSGSYFCRGLVG 159 (175)
T ss_dssp EEEE------------ECCCEEESSCCGGGCEEEEEEEEET
T ss_pred cCCC------------CCCEEEEcccChhhCeEEEEEEEcC
Confidence 5321 2457999999999999999999996
No 71
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.79 E-value=6.3e-19 Score=128.82 Aligned_cols=156 Identities=16% Similarity=0.196 Sum_probs=99.2
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-----ceeeeE
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-----KISIGY 65 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~ 65 (207)
|.|||+..+..+......+. ..+||.+..+...+.++|.|.+++.+|+|.|+|.+.+.. ......
T Consensus 34 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~ 113 (253)
T 3liz_H 34 MSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGT 113 (253)
T ss_dssp EEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCE
T ss_pred EEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCE
Confidence 58999987665554443332 237888877666678899999999999999999998631 234456
Q ss_pred EEEEE----eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEec
Q psy3475 66 KLNVV----ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141 (207)
Q Consensus 66 ~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 141 (207)
.|.|. .+|.+...+....+..|+.+.|.|.+.+..+....+.|++++..+........ .........+.|.|...
T Consensus 114 ~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~-~~~g~~~~~s~L~i~~~ 192 (253)
T 3liz_H 114 LVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAV-LQSDLYTLSSSVTVPSS 192 (253)
T ss_dssp EEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE-EETTEEEEEEEEEEETT
T ss_pred EEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCcc-ccCCeEEEEEEEEEcHH
Confidence 77775 23333323333345579999999999994333348999998763211000000 00000112367899999
Q ss_pred ccCCCeEEEEEeecCCC
Q psy3475 142 VTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~~~ 158 (207)
..+| |.|+|.|.|...
T Consensus 193 ~~~d-g~ytC~v~~~~~ 208 (253)
T 3liz_H 193 TWPS-ETVTCNVAHPAS 208 (253)
T ss_dssp STTT-SCCEEEEEEGGG
T ss_pred HCCC-ceEEEEEEECCC
Confidence 8889 999999999843
No 72
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.79 E-value=8.7e-19 Score=126.08 Aligned_cols=153 Identities=22% Similarity=0.252 Sum_probs=96.2
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc----------e
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK----------I 61 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----------~ 61 (207)
|.|||+.++..+....+.+. ..+|+.+..+...+.++|.|.+++.+|+|.|+|.+.+... .
T Consensus 36 v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~ 115 (228)
T 3bae_H 36 VSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYW 115 (228)
T ss_dssp EEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEE
T ss_pred EEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeee
Confidence 58999876544433333221 2478888766555678999999999999999999987431 1
Q ss_pred eeeEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEE
Q psy3475 62 SIGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSR 135 (207)
Q Consensus 62 ~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 135 (207)
...+.|.|.. +|.+...+....+..|+.+.|.|.+.+. |.+ ..+.|++++..+...... .....+ ....+.
T Consensus 116 ~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p-~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~s~ 192 (228)
T 3bae_H 116 GQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEP-VTLTWNSGSLSSGVHTFP--AVLQSDLYTLSSS 192 (228)
T ss_dssp CCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSC-CEEEEGGGTCCTTEEEEE--EEEETTEEEEEEE
T ss_pred CCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCC-EEEEEeeCCcccCceEcC--ceeCCCcEEEEEE
Confidence 2346777763 2333322323335679999999999987 443 389999877642110000 000000 112456
Q ss_pred EEEEecccCCCeEEEEEeecCC
Q psy3475 136 LVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 136 l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
|.|.....++ |.|+|.|.|..
T Consensus 193 L~i~~~~~d~-g~YtC~~~n~~ 213 (228)
T 3bae_H 193 VTVTSSTWPS-ESITCNVAHPA 213 (228)
T ss_dssp EEEETTTTTT-SCCEEEEEEGG
T ss_pred EEEEhhhcCC-CcEEEEEEECC
Confidence 8888887766 99999999983
No 73
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.79 E-value=6e-18 Score=124.39 Aligned_cols=154 Identities=19% Similarity=0.315 Sum_probs=101.5
Q ss_pred CeeEEccCCccceeeEEE---E--eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEecc
Q psy3475 1 VSWIRKRDLHILTVGILT---Y--TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISK 73 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~---~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~ 73 (207)
|.|||+.++..+....+. . ..++||.+..+ .+.++|.|.+++.+|+|.|+|.+.+... ......|.|..++
T Consensus 43 v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~--~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~ 120 (264)
T 2gjj_A 43 LAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGS--GTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGG 120 (264)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE--TTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-
T ss_pred EEEEEECCCCCcEEEEEecccCCCCCCccEEEecC--CCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCC
Confidence 579998755433322210 0 12478887542 3567999999999999999999987432 3345678887653
Q ss_pred -------------------ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CE---EEEe--c---------
Q psy3475 74 -------------------AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--AN---VVNY--S--------- 118 (207)
Q Consensus 74 -------------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~---~~~~--~--------- 118 (207)
..+..+....+..|+.++|.|.+.+.+.....+.|+++ +. .+.. .
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~ 200 (264)
T 2gjj_A 121 GGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQ 200 (264)
T ss_dssp ------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECG
T ss_pred cccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCc
Confidence 12233444568899999999999987541128999985 22 1211 1
Q ss_pred -CCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 119 -QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 119 -~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
...++....+.......|.|.+++.+|+|.|+|.+.|.
T Consensus 201 ~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 201 KFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp GGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred ccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 02233333322334678999999999999999999985
No 74
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.79 E-value=1.2e-18 Score=132.68 Aligned_cols=156 Identities=14% Similarity=0.158 Sum_probs=100.6
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v 69 (207)
|.|||+.++..+....+... .++|+.+..+...+.++|.|.+++.+|+|.|+|.+.+.. .......|.|
T Consensus 34 v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V 113 (344)
T 1za6_B 34 IHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTV 113 (344)
T ss_dssp EEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEE
T ss_pred EEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEE
Confidence 58999865544433322221 247888876655567899999999999999999998743 2445567777
Q ss_pred Ee----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEecccC
Q psy3475 70 VI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTS 144 (207)
Q Consensus 70 ~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~ 144 (207)
.. +|.+...+....+..|+.+.|.|.+.+.++....+.|++++..+........ ...++ ....+.|.|..+..+
T Consensus 114 ~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~ 192 (344)
T 1za6_B 114 SSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLG 192 (344)
T ss_dssp CSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCE-ECTTSCEEEEEEEEEETTHHH
T ss_pred ecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCe-ECCCCCEEEEEEEEEcHHHcC
Confidence 63 2333322333345689999999999987332128999998865311100000 00000 112357899888887
Q ss_pred CCeEEEEEeecCCC
Q psy3475 145 DSGNYTCAPSSSDG 158 (207)
Q Consensus 145 d~g~Y~C~~~n~~~ 158 (207)
| |.|+|.|.|..+
T Consensus 193 d-G~Y~C~a~n~~~ 205 (344)
T 1za6_B 193 T-QTYICNVNHKPS 205 (344)
T ss_dssp H-BCEEEEEEEGGG
T ss_pred C-CcEEEEEEeCCC
Confidence 8 999999999844
No 75
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.79 E-value=7.2e-18 Score=136.68 Aligned_cols=148 Identities=18% Similarity=0.253 Sum_probs=105.7
Q ss_pred eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEe--
Q psy3475 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVL-- 97 (207)
Q Consensus 20 ~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-- 97 (207)
..++|+.+..+...+.++|.|.+++.+|+|.|+|.+...+.....+.|.|..+++....+....+..|+.+.|.|.+.
T Consensus 390 ~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~an~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~ 469 (585)
T 2ocw_A 390 QYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCK 469 (585)
T ss_pred ccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcccCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCC
Confidence 346778776554555667999999999999999999334456677888887755555556777888999999999997
Q ss_pred --eCCCCCcEEEEEeCCEEEEecCCCce---EEEEecccceEEEEEEecccCCCeEEEEEeecCCCC----eEEEEEecC
Q psy3475 98 --ETPDPPSFIYWYRGANVVNYSQRGGI---SVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA----SVVVHVLNG 168 (207)
Q Consensus 98 --~~~~~~~~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~----~~~~~v~~~ 168 (207)
+.|.+ .+.|+++|..+........ ....+.......|.|.++..+|+|.|+|.|.|..+. .+.|.|..+
T Consensus 470 ~~~~p~~--~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~ 547 (585)
T 2ocw_A 470 FSSYEKY--WCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEER 547 (585)
T ss_pred CCCCccE--EEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEee
Confidence 44444 8999999987754322110 111111223468999999999999999999998432 256666654
Q ss_pred C
Q psy3475 169 K 169 (207)
Q Consensus 169 ~ 169 (207)
+
T Consensus 548 p 548 (585)
T 2ocw_A 548 K 548 (585)
T ss_pred e
Confidence 4
No 76
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.79 E-value=1.2e-18 Score=124.58 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=98.3
Q ss_pred CeeEEccCCccceeeEEEEe------------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-c---eeee
Q psy3475 1 VSWIRKRDLHILTVGILTYT------------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-K---ISIG 64 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~------------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~---~~~~ 64 (207)
|.|||+..+..+......+. ..+|+.+..+...+.++|.|.+++.+|+|.|+|.+.+.. . ....
T Consensus 34 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~ 113 (220)
T 1pz5_B 34 MEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQG 113 (220)
T ss_dssp EEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCC
T ss_pred EEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccCCHHHCEEEEEEEecCCcccceECCC
Confidence 58999876544333332222 147888776554567799999999999999999998743 1 2245
Q ss_pred EEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEE--EecCCCceEEEEecccceEEEE
Q psy3475 65 YKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVV--NYSQRGGISVVTEKQTRTSRLV 137 (207)
Q Consensus 65 ~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 137 (207)
..|.|.. +|.+...+....+..|+.+.|.|.+.+. |.| ..+.|++++... ..... .. ........+.|.
T Consensus 114 ~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~~~~~~~~~~~--~~-~~~~~~~~s~L~ 189 (220)
T 1pz5_B 114 TSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEP-VTVKWNYGALSSGVRTVSS--VL-QSGFYSLSSLVT 189 (220)
T ss_dssp EEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSC-CEEEEGGGTCCTTEEECCC--EE-ETTEEEEEEEEE
T ss_pred EEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCC-eEEEEecCCcccceEEcCC--cc-cCCeEEEEEEEE
Confidence 6777763 2333322333345679999999999997 544 389999876531 00000 00 000011246788
Q ss_pred EEecccCCCeEEEEEeecCCC
Q psy3475 138 ISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 138 i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
|.....++ |.|+|.|.|..+
T Consensus 190 i~~~~~~~-g~Y~C~a~n~~~ 209 (220)
T 1pz5_B 190 VPSSTWPS-QTVICNVAHPAS 209 (220)
T ss_dssp ECGGGTTT-SCCEEEEEEGGG
T ss_pred EcchhcCC-ceEEEEEEECCc
Confidence 88888766 999999999843
No 77
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=99.79 E-value=7.5e-18 Score=136.42 Aligned_cols=129 Identities=22% Similarity=0.327 Sum_probs=99.4
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCc-ceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNS-ELYIKSGSDINLTCVVLETPDPPSFIYWYRGA 112 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~ 112 (207)
...|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|.+..... ...+..|+.+.|.|.+.+.|.+ .+.|++++
T Consensus 252 ~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p--~v~W~k~~ 329 (570)
T 3b43_A 252 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI--KVLWYKDE 329 (570)
T ss_dssp EEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSC--EEEEEETT
T ss_pred EEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCC--EEEEeECC
Confidence 458999999999999999999984 4466778888888887665433 3456789999999999998887 89999999
Q ss_pred EEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC---CeEEEEEecCC
Q psy3475 113 NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVLNGK 169 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~---~~~~~~v~~~~ 169 (207)
..+....+.++.. ......|.|.+++.+|+|.|+|.|.|..+ ....+.|..++
T Consensus 330 ~~l~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P 385 (570)
T 3b43_A 330 TEIQESSKFRMSF----VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP 385 (570)
T ss_dssp EECCCSSSEEEEE----ETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCC
T ss_pred EECCCCCcEEEEE----ECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCC
Confidence 9887654422221 12456899999999999999999999843 33455555443
No 78
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.79 E-value=2.2e-18 Score=122.65 Aligned_cols=131 Identities=22% Similarity=0.241 Sum_probs=84.1
Q ss_pred EEEEcccCCCCCeEEEEEEecCCce--eeeEEEEEEe--ccceEec-CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPKI--SIGYKLNVVI--SKAKIIG-NSELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~--~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
.|.|.+++.+|+|.|+|.+.+.+.. ...+.|.|.. ++..... +..+.+..|+.+.|.|.+.+.+.+...+.|+++
T Consensus 65 ~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~ 144 (213)
T 2x1w_L 65 GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYP 144 (213)
T ss_dssp EEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECS
T ss_pred cEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEec
Confidence 6999999999999999999874332 2335666643 2333333 344478899999999999987655447999987
Q ss_pred CEEEEecCCCceEEEEec----ccceEEEEEEecccCCCeEEEEEeecCCC---CeEEEEEec
Q psy3475 112 ANVVNYSQRGGISVVTEK----QTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVLN 167 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~---~~~~~~v~~ 167 (207)
+..+.............. ....+.|.|.+++.+|+|.|+|.|.|..+ ..+.|.|..
T Consensus 145 g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~ 207 (213)
T 2x1w_L 145 SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 207 (213)
T ss_dssp CSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred CCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence 764321100000000000 11245799999999999999999999843 334455543
No 79
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.79 E-value=3.9e-17 Score=132.33 Aligned_cols=145 Identities=18% Similarity=0.255 Sum_probs=105.6
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCC
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETP 100 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~ 100 (207)
++|+.+..+...+.++|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+...+....+..|+.+.|.|.+.+.+
T Consensus 61 ~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~ 140 (585)
T 2ocw_A 61 AGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTEN 140 (585)
T ss_pred eceEEEEecCCCCEEEEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCC
Confidence 4678776554556778999999999999999999863 446777889998888777677788889999999999999765
Q ss_pred CCCcEEEEEeCCEEEE----ec-------CCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecCC---CCeEEEEE
Q psy3475 101 DPPSFIYWYRGANVVN----YS-------QRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSSD---GASVVVHV 165 (207)
Q Consensus 101 ~~~~~~~W~~~~~~~~----~~-------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~~---~~~~~~~v 165 (207)
.+. .+.|++++.... .. ...++....++ ......|.|.+++.+|+|.|+|.+.|.. ...+.|.|
T Consensus 141 ~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 219 (585)
T 2ocw_A 141 AQK-RKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQV 219 (585)
T ss_pred CCc-cEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEE
Confidence 332 789999764321 11 11233333222 1223479999999999999999999983 33455655
Q ss_pred ec
Q psy3475 166 LN 167 (207)
Q Consensus 166 ~~ 167 (207)
..
T Consensus 220 ~~ 221 (585)
T 2ocw_A 220 LK 221 (585)
T ss_pred cc
Confidence 54
No 80
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.79 E-value=2.4e-18 Score=118.87 Aligned_cols=119 Identities=21% Similarity=0.344 Sum_probs=89.4
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGAN 113 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~ 113 (207)
..+|.|.+++.+|+|.|+|.+.+. .....+.|.|..++... .+....+..|+.+.|.|.+.+. |.+ .+.|+++|.
T Consensus 50 ~~~L~i~~v~~~d~G~Y~C~~~~~-~~s~~~~l~V~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~g~ 125 (176)
T 1f2q_A 50 NSSLNIVNAKFEDSGEYKCQHQQV-NESEPVYLEVFSDWLLL-QASAEVVMEGQPLFLRCHGWRNWDVY--KVIYYKDGE 125 (176)
T ss_dssp SSEEEECSCCGGGCEEEEEECTTS-SCCCCEEEEEECSSEEE-EESCSEEETTSCEEEEEEEGGGCCEE--EEEEEETTE
T ss_pred ceEEEEeccceecCEEEEEEcCCc-cccccEEEEEeCcceee-cCCcceeeCCCCEEEEEEecCCCCce--EEEEEECCE
Confidence 348999999999999999999863 34556777877544433 3344567799999999999644 444 899999998
Q ss_pred EEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC----CCCeEEEEEecCC
Q psy3475 114 VVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS----DGASVVVHVLNGK 169 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~----~~~~~~~~v~~~~ 169 (207)
.+.... ....|.|.++..+|+|.|+|.+.|. .+..+.+.|...+
T Consensus 126 ~~~~~~------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p 173 (176)
T 1f2q_A 126 ALKYWY------------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173 (176)
T ss_dssp ECCSCC------------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred EEeeec------------CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCC
Confidence 774322 2458999999999999999999996 3445666666543
No 81
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.78 E-value=1.6e-18 Score=122.74 Aligned_cols=126 Identities=21% Similarity=0.323 Sum_probs=92.7
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC---ceeeeEEEEEEeccceEecCcceEEecCCcEEEEEE-Ee
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP---KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCV-VL 97 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~-~~ 97 (207)
+.|+.+.. .+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.....+....+..|+.+.|.|. +.
T Consensus 57 ~~r~~~~~------~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~ 130 (212)
T 1f97_A 57 ADRVTFSS------SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHD 130 (212)
T ss_dssp TTTEEEET------TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSC
T ss_pred cCcEEeec------eeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEccc
Confidence 45665442 389999999999999999998742 346677888888776555555567789999999999 67
Q ss_pred eCCCCCcEEEEEeCCE-EEEecCCCc-----eEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 98 ETPDPPSFIYWYRGAN-VVNYSQRGG-----ISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 98 ~~~~~~~~~~W~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
+.|.+ .+.|++++. .+....... ..... ......|.|.++..+|.|.|+|.|.|..
T Consensus 131 ~~p~~--~i~W~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 192 (212)
T 1f97_A 131 GSPPS--EYSWFKDGISMLTADAKKTRAFMNSSFTI--DPKSGDLIFDPVTAFDSGEYYCQAQNGY 192 (212)
T ss_dssp CBSCC--EEEEEETTEESBC-----CBSCSSSCEEE--CTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred CcCCC--EEEEEeCCcccccccccccccccCceeEe--cCCCceEEEEecChhhCcEEEEEEcccc
Confidence 87777 899999998 765432210 00011 1235689999999999999999999983
No 82
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.78 E-value=1e-18 Score=128.32 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=98.1
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC----ceeeeEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP----KISIGYK 66 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~ 66 (207)
|.|||+.++..+......+. .++|+.+..+...+.++|.|.+++.+|+|.|+|.+.+.. .......
T Consensus 40 v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~ 119 (261)
T 2xqy_G 40 MNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTT 119 (261)
T ss_dssp EEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEE
T ss_pred EEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecCCCcceEECCCEE
Confidence 58999976544443333221 257888876554567899999999999999999998743 1224467
Q ss_pred EEEEe----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecc
Q psy3475 67 LNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAV 142 (207)
Q Consensus 67 l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 142 (207)
|.|.. +|.+...+....+..|+.+.|.|.+.+..+....+.|++++..+......... ........+.|.|....
T Consensus 120 L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~ 198 (261)
T 2xqy_G 120 LTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVTSST 198 (261)
T ss_dssp EEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEE-ETTEEEEEEEEEEETTT
T ss_pred EEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEecCcee-cCCcEEEEEEEEEeccc
Confidence 77764 23332222223356799999999999863333489999987653211111111 00001124678998888
Q ss_pred cCCCeEEEEEeecC
Q psy3475 143 TSDSGNYTCAPSSS 156 (207)
Q Consensus 143 ~~d~g~Y~C~~~n~ 156 (207)
.+| |.|+|.|.|.
T Consensus 199 ~~~-g~YtC~v~n~ 211 (261)
T 2xqy_G 199 WPS-QSITCNVAHP 211 (261)
T ss_dssp TTT-SCCEEEEEEG
T ss_pred cCC-CEEEEEEEEC
Confidence 878 9999999997
No 83
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=99.78 E-value=2.5e-17 Score=131.99 Aligned_cols=123 Identities=20% Similarity=0.289 Sum_probs=93.4
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecC---cceEEecCCcEEEEEEEeeCCCCCcEEEEEe
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGN---SELYIKSGSDINLTCVVLETPDPPSFIYWYR 110 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~---~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~ 110 (207)
...|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|.+...+ ....+..|+.+.|.|.+.+.|.|. .+.|++
T Consensus 272 ~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~-~v~W~k 350 (524)
T 2ec8_A 272 QATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPE-HQQWIY 350 (524)
T ss_dssp EEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCC-EEEEES
T ss_pred EEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCc-EEEEEE
Confidence 348999999999999999999874 445667888998887665543 357788999999999999998882 399999
Q ss_pred CCEEEEecCCCceEEEEec--ccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 111 GANVVNYSQRGGISVVTEK--QTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
++..+..... ++....+. ......|.|.++..+|+|.|+|.|.|..+.
T Consensus 351 ~g~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 400 (524)
T 2ec8_A 351 MNRTFTDKWE-DYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN 400 (524)
T ss_dssp SSCBCSSSBC-CEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred CCeeccCCcc-ceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCce
Confidence 9887755432 11111000 113468999999999999999999998433
No 84
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.78 E-value=1.7e-17 Score=117.52 Aligned_cols=152 Identities=18% Similarity=0.250 Sum_probs=97.3
Q ss_pred CeeEEccCCccceeeEEEEeC---------CCeEEEeecC-CCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTN---------DLRFTSLHSD-GSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~---------~~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~ 68 (207)
|.|||.+.............. .+|+...... ...+++|.|.+++.+|+|.|+|.+.+... ......+.
T Consensus 34 V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~ 113 (218)
T 4frw_A 34 VAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLR 113 (218)
T ss_dssp EEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEE
Confidence 579997654333322221111 2344433222 23456899999999999999999986322 23333444
Q ss_pred EEeccce-EecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCe
Q psy3475 69 VVISKAK-IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSG 147 (207)
Q Consensus 69 v~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 147 (207)
+..++.. ........+..|..+.+.|.+.+.|.| .+.|++++..+....... ........+.|.|.++..+|.|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p--~i~W~~~~~~~~~~~~~~---~~~~~~~~s~L~i~~~~~~d~g 188 (218)
T 4frw_A 114 VLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAP--SVTWDTEVKGTTSSRSFK---HSRSAAVTSEFHLVPSRSMNGQ 188 (218)
T ss_dssp EEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCC--EEEEEESSCCEEEEEEEE---CSSSEEEEEEEEECCCGGGTTC
T ss_pred EeeeccceeeeeeeeeeeeccccceeeeccCCcCc--eEEEEECCcccccCceEe---cCCcEEEEEEEEEeeCCHHhCe
Confidence 4443332 233445556678899999999999888 899999887665432100 0000123467999999999999
Q ss_pred EEEEEeecCC
Q psy3475 148 NYTCAPSSSD 157 (207)
Q Consensus 148 ~Y~C~~~n~~ 157 (207)
.|+|.|.|..
T Consensus 189 ~YtC~a~N~~ 198 (218)
T 4frw_A 189 PLTCVVSHPG 198 (218)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEEEeCC
Confidence 9999999984
No 85
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.78 E-value=3.5e-18 Score=132.34 Aligned_cols=114 Identities=32% Similarity=0.499 Sum_probs=95.7
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV 115 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~ 115 (207)
.|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+
T Consensus 276 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p--~v~W~~~g~~~ 353 (403)
T 3laf_A 276 NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVP--TVNWMKNGDVV 353 (403)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCC--EEEEEETTEEC
T ss_pred EEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCC--EEEEEECCEEC
Confidence 7999999999999999999974 44677889999998888777888888899999999999998888 89999999887
Q ss_pred EecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 116 NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
..... .... ....|.|..+..+|.|.|+|.|.|..+.
T Consensus 354 ~~~~~--~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 390 (403)
T 3laf_A 354 IPSDY--FQIV-----GGSNLRILGVVKSDEGFYQCVAENEAGN 390 (403)
T ss_dssp CCSSS--EEEE-----TTTEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CCCCc--EEEe-----cCccEEEeccccccCEEEEEEEEcCCce
Confidence 65433 1211 2357999999999999999999998444
No 86
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.78 E-value=9.1e-18 Score=123.60 Aligned_cols=154 Identities=23% Similarity=0.340 Sum_probs=97.9
Q ss_pred CeeEEccCCccceeeEEE---Ee--CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEecc
Q psy3475 1 VSWIRKRDLHILTVGILT---YT--NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISK 73 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~---~~--~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~ 73 (207)
|.|||+..+..+....+. .. .++||.+... .+.++|.|.+++.+|+|.|+|.+.+... ......|.|..++
T Consensus 52 v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~ 129 (268)
T 1x9q_A 52 LRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGS--GTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSA 129 (268)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE--TTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC-----
T ss_pred EEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcC--CCEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCc
Confidence 579998755443322211 00 2578887542 3567899999999999999999987432 3344567666432
Q ss_pred c-----------------------eEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEE---Ee--------
Q psy3475 74 A-----------------------KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVV---NY-------- 117 (207)
Q Consensus 74 ~-----------------------~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~---~~-------- 117 (207)
. .+..+....+..|+.++|.|.+.+.+.....+.|+++ +..+ ..
T Consensus 130 ~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~ 209 (268)
T 1x9q_A 130 DDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNY 209 (268)
T ss_dssp -------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTT
T ss_pred cCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEccccccc
Confidence 1 2233445678899999999999987542238999973 2221 11
Q ss_pred ------cCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 118 ------SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 118 ------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
....++....+.......|.|.+++.+|+|.|+|.+.+.
T Consensus 210 ~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 210 ETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp CEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred ccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 112344443322223568999999999999999999875
No 87
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.78 E-value=1.1e-18 Score=123.94 Aligned_cols=142 Identities=21% Similarity=0.288 Sum_probs=96.8
Q ss_pred CeeEEccCCccceeeEEEE--------eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--e---eeeEEE
Q psy3475 1 VSWIRKRDLHILTVGILTY--------TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--I---SIGYKL 67 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~--------~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~---~~~~~l 67 (207)
|.|||+..........+.. ...+|+.+..+...++++|.|.+++.+|+|.|+|.+.+... . ...+.|
T Consensus 39 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l 118 (214)
T 2zg1_A 39 VYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNL 118 (214)
T ss_dssp EEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEE
T ss_pred EEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEE
Confidence 5799987643322222211 12478887655444567899999999999999999987532 1 246778
Q ss_pred EEEeccc--eEecCcceEEecCCcEEEEEEEeeC----CCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEec
Q psy3475 68 NVVISKA--KIIGNSELYIKSGSDINLTCVVLET----PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141 (207)
Q Consensus 68 ~v~~~~~--~~~~~~~~~~~~g~~~~l~C~~~~~----~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 141 (207)
.|..++. .+..+. .+..|+.++|.|.+.+. |.| .+.|++++...... . ....+.|.|..+
T Consensus 119 ~V~~~~~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~p--~v~W~~~~~~~~~~-~---------~~~~~~L~i~~~ 184 (214)
T 2zg1_A 119 EVTALIEKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPPL--TFSWTGNALSPLDP-E---------TTRSSELTLTPR 184 (214)
T ss_dssp EEECCCCCCEEC--C--CCCTTCCEEEEEECTTCCSCSSCC--EEEEESSTTSSSCS-S---------CCCSSEEEECCC
T ss_pred EEecCCCCCceecCc--cccCCCeEEEEEEeccCCCCCCCc--eEEEeCCCCccCCC-C---------ceeEEEEEEecc
Confidence 8876432 122222 25689999999999774 455 89999987542211 1 123568999999
Q ss_pred ccCCCeEEEEEeecC
Q psy3475 142 VTSDSGNYTCAPSSS 156 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~ 156 (207)
..+|.|.|+|.|.|.
T Consensus 185 ~~~~~g~Y~C~a~n~ 199 (214)
T 2zg1_A 185 PEDHGTNLTCQMKRQ 199 (214)
T ss_dssp TTCCSCEEEEEEECC
T ss_pred cHHcCcEEEEEEEeC
Confidence 999999999999997
No 88
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.78 E-value=1.6e-18 Score=120.47 Aligned_cols=110 Identities=23% Similarity=0.262 Sum_probs=83.1
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV 114 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~ 114 (207)
..+|.|.+++.+|+|.|+|.+.+.. ..+.|.|...+ .+....+..|+.+.|.|.+.+.|.+ .+.|++++..
T Consensus 67 ~~~L~i~~v~~~D~G~Y~C~~~~~~---~~~~l~V~~~~----~~~~~~v~~g~~~~l~C~~~~~p~~--~v~W~~~~~~ 137 (184)
T 2ny1_B 67 NFPLIIKNLKIEDSDTYICEVEDQK---EEVQLLVFGLT----ANSDTHLLQGQSLTLTLESPPGSSP--SVQCRSPRGK 137 (184)
T ss_dssp BCCEEECSCCGGGCEEEEEEETTEE---EEEEEEEEEEE----ESSCSEEETTCCEEEEEECCTTCCC--EEEEECTTSC
T ss_pred eEEEEEecCCHHHCEEEEEEEEcCC---CcEEEEEEEec----CCCCceeecCCCEEEEEEcCCCCCC--EEEEEeCCCc
Confidence 5579999999999999999997632 24556665321 2444567899999999999998766 9999998765
Q ss_pred EEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC---CCCeEEEEEec
Q psy3475 115 VNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS---DGASVVVHVLN 167 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~---~~~~~~~~v~~ 167 (207)
+.. ....|.|.++..+|+|.|+|.|.|. ....+.+.|..
T Consensus 138 ~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~ 179 (184)
T 2ny1_B 138 NIQ--------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 179 (184)
T ss_dssp EEE--------------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ccc--------------CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEe
Confidence 422 2357999999999999999999987 23344555543
No 89
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.78 E-value=1.1e-18 Score=125.89 Aligned_cols=154 Identities=19% Similarity=0.243 Sum_probs=98.1
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEe--
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVI-- 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~-- 71 (207)
|.|||+.++..+....+.. ..++||.+... .+.++|.|.+++.+|+|.|+|.+.+... ......|.|..
T Consensus 56 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~ 133 (237)
T 3sob_L 56 VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS--GTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTV 133 (237)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE--TTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCC
T ss_pred EEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcC--CCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCC
Confidence 5799987654443222110 12467876632 3577899999999999999999986432 34445666643
Q ss_pred -ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec---ccceEEEEEEecccCCCe
Q psy3475 72 -SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDSG 147 (207)
Q Consensus 72 -~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g 147 (207)
+|.+...+.......|+.+.|.|.+.+.+++...+.|++++..+.............. ....+.|.|.....+|.|
T Consensus 134 ~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g 213 (237)
T 3sob_L 134 AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHK 213 (237)
T ss_dssp BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCC
T ss_pred CCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCC
Confidence 3333333333333468889999999996441238999999987753210000000000 112356889999999999
Q ss_pred EEEEEeecC
Q psy3475 148 NYTCAPSSS 156 (207)
Q Consensus 148 ~Y~C~~~n~ 156 (207)
.|+|.|.|.
T Consensus 214 ~Y~C~a~n~ 222 (237)
T 3sob_L 214 VYACEVTHQ 222 (237)
T ss_dssp EEEEEEECT
T ss_pred cEEEEEeeC
Confidence 999999998
No 90
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.78 E-value=8.2e-18 Score=130.20 Aligned_cols=115 Identities=21% Similarity=0.344 Sum_probs=95.4
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV 115 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~ 115 (207)
.|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+
T Consensus 276 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p--~v~W~~~g~~~ 353 (404)
T 3p3y_A 276 ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKP--TVQWMVNGEPL 353 (404)
T ss_dssp EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCC--EEEEEETTEEG
T ss_pred eEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCC--ceEEEECCEec
Confidence 8999999999999999999984 45677889999998888777888888999999999999998888 89999999987
Q ss_pred EecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 116 NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
........... ....|.|.++..+|+|.|+|.|.|..+
T Consensus 354 ~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G 391 (404)
T 3p3y_A 354 QSAPPNPNREV-----AGDTIIFRDTQISSRAVYQCNTSNEHG 391 (404)
T ss_dssp GGSCCCTTEEE-----ETTEEEESSCCSSCCCEEEEEEEETTE
T ss_pred CCCCCCceEEe-----cCCEEEEeecCHHHCEEEEEEEEeCCC
Confidence 65432111111 234799999999999999999999843
No 91
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.78 E-value=3.9e-18 Score=121.49 Aligned_cols=151 Identities=19% Similarity=0.160 Sum_probs=90.4
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc-----eeeeEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK-----ISIGYK 66 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~ 66 (207)
|.|||+.++..+......+. .++||.+.. ..+.++|.|.+++.+|+|.|.|.+.+... ......
T Consensus 33 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~ 110 (215)
T 3nl4_H 33 MFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISK--TSTTVDLKITSPTTEDTATYFCVRKYGSEWGGDLWGPGTL 110 (215)
T ss_dssp EEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEE--CSSEEEEEESSCCGGGCEEEEEEEECSSSSCEEEECCCEE
T ss_pred EEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEe--eCCEEEEEECCCCcccCEEEEEEEecCCCccceEEcCCEE
Confidence 58999877655444333221 247888765 44678899999999999999999987422 344567
Q ss_pred EEEE----eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecc
Q psy3475 67 LNVV----ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAV 142 (207)
Q Consensus 67 l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 142 (207)
|.|. .+|.+...+....+..|+.+.|.|.+.+.+++...+.|++++..+........ . ...........-.+.
T Consensus 111 l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~--~-~~~g~~~~~s~l~v~ 187 (215)
T 3nl4_H 111 VTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVRTFPSV--R-QSSGLYSLSSVVSVT 187 (215)
T ss_dssp EEECSSCCBCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE--E-CTTSCEEEEEEEEEC
T ss_pred EEEeCCCcCCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEeeCCEECCeEecCce--E-CCCCCEEEEEEEEEe
Confidence 7776 33333323333345679999999999997655557889998864322111000 0 000111111113345
Q ss_pred cCCCeEEEEEeecCC
Q psy3475 143 TSDSGNYTCAPSSSD 157 (207)
Q Consensus 143 ~~d~g~Y~C~~~n~~ 157 (207)
..| |.|+|.|.|..
T Consensus 188 ~~d-g~ytC~v~~~~ 201 (215)
T 3nl4_H 188 SSS-QPVTCNVAHPA 201 (215)
T ss_dssp C----CCEEEEEEGG
T ss_pred ccC-CEEEEEEEeCC
Confidence 566 99999999984
No 92
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.78 E-value=6.8e-18 Score=123.90 Aligned_cols=159 Identities=19% Similarity=0.356 Sum_probs=99.8
Q ss_pred CeeEEccCCccceeeEEEEeC---------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-c--eeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTN---------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-K--ISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~l~ 68 (207)
|.|||.............+.. .+|+.+..+...++.+|.|.+++.+|+|.|+|.+.+.. . ....+.|.
T Consensus 40 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~ 119 (268)
T 3mj6_A 40 VDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119 (268)
T ss_dssp EEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEE
T ss_pred EEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEE
Confidence 579996554333322222222 26676654444556789999999999999999998742 2 33444554
Q ss_pred EEeccceEecCcceEEecCCcEEEEEEEe---eCCCCCcEEEEEe-CCE------EEEe-----------cCC--CceEE
Q psy3475 69 VVISKAKIIGNSELYIKSGSDINLTCVVL---ETPDPPSFIYWYR-GAN------VVNY-----------SQR--GGISV 125 (207)
Q Consensus 69 v~~~~~~~~~~~~~~~~~g~~~~l~C~~~---~~~~~~~~~~W~~-~~~------~~~~-----------~~~--~~~~~ 125 (207)
|. + ..+....+..|+.+.|.|.+. +.|.+ .+.|++ ++. .+.. ..+ .++..
T Consensus 120 V~--~---~~p~~~~v~~G~~v~L~C~~~~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 192 (268)
T 3mj6_A 120 VL--P---EEPRDLRVRVGDTTQMRCSIQSTEEKRVT--KVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL 192 (268)
T ss_dssp EE--C---CCCSEEEEETTCCEEECCBCEESSSSCCC--EEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEE
T ss_pred Ee--c---cCCCccccccCCcEEEEEEecCCCCCCcc--ceEEEecCCCCCcceeEEEecCCCCccccccccccccceEe
Confidence 43 2 234567788999999999994 44555 899998 332 1111 000 01111
Q ss_pred EEecccceEEEEEEecccCCCeEEEEEeecCCC---CeEEEEEe
Q psy3475 126 VTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166 (207)
Q Consensus 126 ~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~---~~~~~~v~ 166 (207)
..+.......|.|.+++.+|+|.|+|.|.|..+ ..+.|.|.
T Consensus 193 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 236 (268)
T 3mj6_A 193 TGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236 (268)
T ss_dssp CSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEE
Confidence 111113456899999999999999999999832 34455554
No 93
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.78 E-value=5e-18 Score=124.89 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=101.0
Q ss_pred CeeEEccCCccceeeEEEEe-----C----CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC--C-ceeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----N----DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--P-KISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~----~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~-~~~~~~~l~ 68 (207)
|.|||+.++........... . ++|+.+..+ ..++++|.|.+++.+|+|.|+|.+.+. . .......|.
T Consensus 57 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~ 135 (268)
T 3pl6_D 57 LYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP-EGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLT 135 (268)
T ss_dssp EEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT-TSSSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEE
T ss_pred EEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec-CCCEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEE
Confidence 58999876655443322211 1 178887654 456789999999999999999999862 1 234556777
Q ss_pred EEe------ccceE-ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEE------Eec-ccceE
Q psy3475 69 VVI------SKAKI-IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV------TEK-QTRTS 134 (207)
Q Consensus 69 v~~------~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~------~~~-~~~~~ 134 (207)
|.. +|... ..+....+..|+.++|.|.+.+.+++...+.|+++|..+........... .++ ....+
T Consensus 136 V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s 215 (268)
T 3pl6_D 136 VLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSS 215 (268)
T ss_dssp EESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEE
T ss_pred EecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEEEE
Confidence 765 23222 22333445569999999999997665558999999987753211000000 000 11235
Q ss_pred EEEEEecccCC-CeEEEEEeecC
Q psy3475 135 RLVISKAVTSD-SGNYTCAPSSS 156 (207)
Q Consensus 135 ~l~i~~~~~~d-~g~Y~C~~~n~ 156 (207)
.|.|.....+| .|.|+|.|.|.
T Consensus 216 ~l~i~~~~~~d~~g~YtC~v~~~ 238 (268)
T 3pl6_D 216 RLRVSATFWQNPRNHFRCQVQFY 238 (268)
T ss_dssp EEEEEHHHHSCTTCEEEEEEEEC
T ss_pred EEEEcHHHhccCCCEEEEEEEcC
Confidence 67888777777 99999999997
No 94
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.78 E-value=8.5e-18 Score=125.57 Aligned_cols=142 Identities=18% Similarity=0.277 Sum_probs=102.1
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEec-----CcceEEecCCcEEEEEEE
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIG-----NSELYIKSGSDINLTCVV 96 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~-----~~~~~~~~g~~~~l~C~~ 96 (207)
.++.+.... .+.++|.|.+++.+|+|.|+|.+.+. +.....+.|.|..++..... +....+..|+.+.|.|.+
T Consensus 50 ~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~ 128 (305)
T 2nzi_A 50 LKYRIQEFK-GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128 (305)
T ss_dssp SSEEEEEET-TTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEE
T ss_pred CeEEEEECC-CCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEE
Confidence 455543322 24568999999999999999999874 34567778888776644322 245667889999999999
Q ss_pred eeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEe-cccCCCeEEEEEeecCCC---CeEEEEEecCCcc
Q psy3475 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISK-AVTSDSGNYTCAPSSSDG---ASVVVHVLNGKKF 171 (207)
Q Consensus 97 ~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~Y~C~~~n~~~---~~~~~~v~~~~~~ 171 (207)
.+.|.+ .+.|++++..+....+ +.... ......|.|.+ +...|.|.|+|.+.|..+ ....+.+...+.+
T Consensus 129 ~g~p~p--~i~W~~~~~~~~~~~~--~~~~~--~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~ 201 (305)
T 2nzi_A 129 SGKPDP--VITWQKGQDLIDNNGH--YQVIV--TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDP 201 (305)
T ss_dssp EEESCC--EEEEEESSSBCCSSSS--CEEEE--CSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCC
T ss_pred CCCCCC--EEEEEECCEECCCCCc--EEEEE--cCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCC
Confidence 999888 8999999887754433 22222 12456899988 999999999999999833 3455556554443
No 95
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.78 E-value=9e-19 Score=124.43 Aligned_cols=150 Identities=17% Similarity=0.263 Sum_probs=97.1
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC----ceeeeEEEEEEe
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP----KISIGYKLNVVI 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~ 71 (207)
|.|||+..+..+....+.. ..++||.+.. ..+.++|.|.+++.+|+|.|+|.+.+.. .......|.|..
T Consensus 33 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~ 110 (213)
T 3nl4_L 33 LAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSG--SGTDFTLTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKG 110 (213)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEECCSSTTTCEECCCEEEEEEC
T ss_pred EEEEEECCCCCcEEEEEeCCccCCCCCccEEEec--CCCEEEEEECCCChHHCEEEEEecCCCCceeEEeCCCeEEEEeC
Confidence 5799976554333221100 1147887663 3357789999999999999999998743 234455666643
Q ss_pred ---ccceEecCcceEEecCCcEEEEEEEee-CCCCCcEEEEEeCCEEEEecCCCceEEEEe--c-ccceEEEEEEecccC
Q psy3475 72 ---SKAKIIGNSELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTE--K-QTRTSRLVISKAVTS 144 (207)
Q Consensus 72 ---~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~-~~~~~~l~i~~~~~~ 144 (207)
+|.+...+....+..|+.+.|.|.+.+ .|.+ .+.|++++..+............. + ....+.|.|..+..+
T Consensus 111 ~~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~--~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~ 188 (213)
T 3nl4_L 111 DPVAPTVLIFPPSADLVATGTVTIVCVANKYFPDV--TVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYN 188 (213)
T ss_dssp CCBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCC--EEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHH
T ss_pred CCcCCeEEEeCCchhhccCCcEeEEEEEecccCCc--EEEEEeCCccCCCCeecccCcccCCCCeEEEEEEEEecHHHcC
Confidence 333333333334456999999999999 6755 899999998775321000000000 0 112367999999999
Q ss_pred CCeEEEEEee
Q psy3475 145 DSGNYTCAPS 154 (207)
Q Consensus 145 d~g~Y~C~~~ 154 (207)
|.|.|+|.|.
T Consensus 189 d~g~Y~C~a~ 198 (213)
T 3nl4_L 189 SHKEYTCKVT 198 (213)
T ss_dssp TCCEEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9999999998
No 96
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.78 E-value=7.5e-18 Score=124.99 Aligned_cols=116 Identities=19% Similarity=0.325 Sum_probs=88.7
Q ss_pred EEEEcccCCCCCeEEEEEEecCC-c--eeeeEEEEEEeccceEecCc--ceEEecCCcEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP-K--ISIGYKLNVVISKAKIIGNS--ELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~l~v~~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
.|.|.+++.+|+|.|+|.+.+.. . ....+.|.|..+|.+..... ...+..|+.+.|.|.+.+.|.| .+.|+++
T Consensus 156 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~ 233 (291)
T 1qz1_A 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP--TMSWTKD 233 (291)
T ss_dssp CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCC--EEEEEET
T ss_pred cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCC--cEEEEEC
Confidence 69999999999999999998732 2 34566777777776554432 4456789999999999998888 8999999
Q ss_pred CEEEEecCC--CceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 112 ANVVNYSQR--GGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 112 ~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+..+..... .++.. ......|.|.++..+|.|.|+|.|.|..+
T Consensus 234 g~~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 278 (291)
T 1qz1_A 234 GEPIENEEEDDEKHIF----SDDSSELTIRNVDKNDEAEYVCIAENKAG 278 (291)
T ss_dssp TEECCCC--CCSSEEE----CTTSCEEEECSCCGGGCEEEEEEEEETTE
T ss_pred CEECcCCCCCCcceEE----cCCCcEEEEEecChhcCEEEEEEEEeCCC
Confidence 998765432 12221 12346899999999999999999999843
No 97
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.78 E-value=6.1e-18 Score=122.20 Aligned_cols=122 Identities=24% Similarity=0.426 Sum_probs=88.8
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEec----cceEe-cCcceEEecCCcEEEEEEEeeCCCCCcEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVIS----KAKII-GNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~----~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~ 109 (207)
.+|.|.+++.+|+|.|+|.+.+. +.....+.|.|... +.... .+....+..|+.+.|.|.+.+.|.+ .+.|+
T Consensus 72 ~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p--~v~W~ 149 (241)
T 3grw_A 72 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP--HIQWL 149 (241)
T ss_dssp TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCC--EEEEE
T ss_pred eEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCC--EEEEE
Confidence 38999999999999999999874 34566677777652 22222 2456677889999999999998877 89999
Q ss_pred e----CCEEEEecCCCceEEEEe----cccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 110 R----GANVVNYSQRGGISVVTE----KQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 110 ~----~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+ ++..+............. .......|.|.++..+|.|.|+|.+.|..+.
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~ 207 (241)
T 3grw_A 150 KHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV 207 (241)
T ss_dssp EECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred EcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcce
Confidence 9 776654433322211110 1224567999999999999999999998443
No 98
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.77 E-value=4.2e-18 Score=128.67 Aligned_cols=155 Identities=14% Similarity=0.209 Sum_probs=97.4
Q ss_pred CeeEEccCCccceeeEEEEe--CCCeEEEeecCC---CCcEEEEEcccCCCCCeEEEEEEecCCc------eeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT--NDLRFTSLHSDG---SDEWTLKIASSQLRDSGTYECQVSTEPK------ISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~--~~~r~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v 69 (207)
|.|||.+.... ..++.+. ...|+....+.. ....+|.|.+++.+|+|.|+|.+.+... ....+.|.|
T Consensus 36 v~W~k~~~~~~--~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V 113 (327)
T 2wng_A 36 IQWFRGAGPAR--ELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSV 113 (327)
T ss_dssp EEEEESCSTTC--EEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEE
T ss_pred EEEEECCCCCc--eEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEE
Confidence 57999653211 1111111 123666443321 3466899999999999999999987432 224567888
Q ss_pred Eeccce-EecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEE-Eec-ccceEEEEEEecccCCC
Q psy3475 70 VISKAK-IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV-TEK-QTRTSRLVISKAVTSDS 146 (207)
Q Consensus 70 ~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~i~~~~~~d~ 146 (207)
..++.. ........+..|+.+.|.|.+.+.+.+...+.|++++..+...... .... .++ ....+.|.|.....+|.
T Consensus 114 ~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~d~~ 192 (327)
T 2wng_A 114 RAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTN-VDPVGESVSYSIHSTAKVVLTREDVH 192 (327)
T ss_dssp EBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEE-EECSSCCSCEEEEEEEEEECCTTGGG
T ss_pred EecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccc-cccccCCCceEEEEEEEEechhcCcC
Confidence 765532 2223345677899999999999987665589999999887543210 0000 000 11234677877777778
Q ss_pred eEEEEEeecCCC
Q psy3475 147 GNYTCAPSSSDG 158 (207)
Q Consensus 147 g~Y~C~~~n~~~ 158 (207)
|.|+|.+.|..+
T Consensus 193 g~Y~C~a~n~~~ 204 (327)
T 2wng_A 193 SQVICEVAHVTL 204 (327)
T ss_dssp CEEEEEEECTTS
T ss_pred ceEEEEEecccc
Confidence 999999999843
No 99
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.77 E-value=1.6e-18 Score=125.63 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=99.5
Q ss_pred CeeEEccCCccceeeEEEE---------------eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC------
Q psy3475 1 VSWIRKRDLHILTVGILTY---------------TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP------ 59 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~---------------~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~------ 59 (207)
|.|||+.++..+......+ ...+||.+..+...+.++|.|.+++.+|+|.|.|.+.+..
T Consensus 36 v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~ 115 (239)
T 3tv3_H 36 WGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGGEVLRYTD 115 (239)
T ss_dssp EEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECSSCSS
T ss_pred EEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEEECCCChhhCEEEEEEEecCccccccc
Confidence 5899998776665554444 1247898887666678899999999999999999997531
Q ss_pred --------ceeeeEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEE
Q psy3475 60 --------KISIGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVT 127 (207)
Q Consensus 60 --------~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 127 (207)
.......|.|.. +|.+...+....+..|+.+.|.|.+.+.+++...+.|++++..+........ ...
T Consensus 116 w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~-~~~ 194 (239)
T 3tv3_H 116 WPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQS 194 (239)
T ss_dssp SCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE-ECT
T ss_pred cccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCce-ECC
Confidence 122334666642 2333222333334569999999999996554447899998753211110000 000
Q ss_pred ec-ccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 128 EK-QTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 128 ~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
++ ....+.|.|......| |.|+|.|.|..
T Consensus 195 ~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~ 224 (239)
T 3tv3_H 195 SGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 224 (239)
T ss_dssp TSCEEEEEEEEEEGGGTTT-CCCEEEEEEGG
T ss_pred CCCEEEEEEEEEchhhcCC-CEEEEEEEECC
Confidence 00 1123578888888888 99999999973
No 100
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.77 E-value=6.8e-18 Score=123.11 Aligned_cols=154 Identities=16% Similarity=0.202 Sum_probs=97.6
Q ss_pred CeeEEccCCccceeeEEE---E--eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEe--
Q psy3475 1 VSWIRKRDLHILTVGILT---Y--TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVI-- 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~---~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~-- 71 (207)
|.|||++.+..+....+. . ...+|+.+.. ..+.++|.|.+++.+|+|.|+|.+.+... ......|.|..
T Consensus 71 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~ 148 (252)
T 3bkj_L 71 LEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG--SGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRAD 148 (252)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCC
T ss_pred EEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc--cCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCC
Confidence 579998755433222210 0 1146777654 23567899999999999999999987432 23345677754
Q ss_pred -ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec---ccceEEEEEEecccCCCe
Q psy3475 72 -SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDSG 147 (207)
Q Consensus 72 -~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g 147 (207)
+|.+...+.......|+.++|.|.+.+.+++...+.|+++|..+.............. ....+.|.|..+..+|.|
T Consensus 149 ~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g 228 (252)
T 3bkj_L 149 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN 228 (252)
T ss_dssp BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCC
T ss_pred cCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCC
Confidence 2333332322223468899999999996544347999999987653300000000000 112356899999999999
Q ss_pred EEEEEeecC
Q psy3475 148 NYTCAPSSS 156 (207)
Q Consensus 148 ~Y~C~~~n~ 156 (207)
.|+|.|.|.
T Consensus 229 ~Y~C~a~n~ 237 (252)
T 3bkj_L 229 SYTCEATHK 237 (252)
T ss_dssp EEEEEEECT
T ss_pred eEEEEEEeC
Confidence 999999998
No 101
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.77 E-value=5.5e-18 Score=120.99 Aligned_cols=117 Identities=18% Similarity=0.312 Sum_probs=91.5
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEec---------------cceEecCcceEEecCCcEEEEEEEe
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVIS---------------KAKIIGNSELYIKSGSDINLTCVVL 97 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~---------------~~~~~~~~~~~~~~g~~~~l~C~~~ 97 (207)
...|.|.+++.+|+|.|+|.+.+... ....+.|.|... +.+...+....+..|+.+.|.|.+.
T Consensus 64 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~ 143 (218)
T 3k0w_A 64 TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAV 143 (218)
T ss_dssp SSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEE
T ss_pred CCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEec
Confidence 34899999999999999999987432 355678888765 3444456667788999999999999
Q ss_pred eCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC----CCeEEEEEe
Q psy3475 98 ETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD----GASVVVHVL 166 (207)
Q Consensus 98 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~----~~~~~~~v~ 166 (207)
+.|.+ .+.|++++..+.... ...|.|.++..+|.|.|+|.+.|.. +..+.+.|.
T Consensus 144 g~p~~--~v~W~~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~ 201 (218)
T 3k0w_A 144 GSPIP--HYQWFKNELPLTHET-------------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 201 (218)
T ss_dssp BSSCC--EEEEEETTEECTTCC-------------SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred ccCCC--eEEEEECCEECCCCC-------------CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence 98777 899999998775332 3479999999999999999999973 334455444
No 102
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.77 E-value=7.9e-18 Score=122.14 Aligned_cols=155 Identities=18% Similarity=0.235 Sum_probs=100.4
Q ss_pred CeeEEccCCccceeeEEEE------eC---CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-----CceeeeEE
Q psy3475 1 VSWIRKRDLHILTVGILTY------TN---DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-----PKISIGYK 66 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~------~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-----~~~~~~~~ 66 (207)
|.|||+..+..+....... .. ++||.+..+ +.+.++|.|.+++.+|+|.|+|.+.+. ........
T Consensus 33 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~ 111 (245)
T 4ei6_B 33 FYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERP-DGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTR 111 (245)
T ss_dssp EEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECC-TTSCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEE
T ss_pred EEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEec-cCceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcE
Confidence 5899987665443332221 11 178887653 356889999999999999999999842 12345567
Q ss_pred EEEEe------ccce-EecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEE------ec-ccc
Q psy3475 67 LNVVI------SKAK-IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVT------EK-QTR 132 (207)
Q Consensus 67 l~v~~------~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~------~~-~~~ 132 (207)
|.|.. +|.. +..+....+..|+.+.|.|.+.+.+++...+.|+++|..+............ ++ ...
T Consensus 112 l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~ 191 (245)
T 4ei6_B 112 LTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYAL 191 (245)
T ss_dssp EEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEE
T ss_pred EEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEE
Confidence 77763 3322 2234444455699999999999965444479999999887542110000000 00 112
Q ss_pred eEEEEEEecccCC-CeEEEEEeecC
Q psy3475 133 TSRLVISKAVTSD-SGNYTCAPSSS 156 (207)
Q Consensus 133 ~~~l~i~~~~~~d-~g~Y~C~~~n~ 156 (207)
.+.|.|.....+| .|.|+|.|.|.
T Consensus 192 ~s~L~i~~~~~~d~~g~ytC~v~~~ 216 (245)
T 4ei6_B 192 SSRLRVSATFWQNPRNHFRCQVQFY 216 (245)
T ss_dssp EEEEEEEHHHHSCTTCEEEEEEEEC
T ss_pred EEEEEEcHHHhccCCCeEEEEEEEC
Confidence 2458888888888 99999999987
No 103
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.77 E-value=2.8e-18 Score=118.68 Aligned_cols=113 Identities=22% Similarity=0.272 Sum_probs=82.5
Q ss_pred CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-Cce--eeeEEEEEEeccceEecCcceEEecCCcEEEEEEEe
Q psy3475 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKI--SIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVL 97 (207)
Q Consensus 21 ~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 97 (207)
.++|+.+..++ +|.|.+++.+|+|.|+|.+.+. +.. ...+.|.|..++. .+.. ...+..+.|.|.+.
T Consensus 51 ~~~r~~~~~~g-----sL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~----~p~i-~~~~~~v~L~C~~~ 120 (176)
T 1hng_A 51 KSGAFEILANG-----DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS----KPMI-YWECSNATLTCEVL 120 (176)
T ss_dssp SSTTEEECTTS-----CEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCC----CCEE-EEETTTTEEEEECS
T ss_pred CCCeEEECCCC-----cEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCC----CCEE-EecCCcEEEEEEec
Confidence 36777764333 5999999999999999999974 333 5566777765432 1111 12355689999999
Q ss_pred eCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCe
Q psy3475 98 ETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160 (207)
Q Consensus 98 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~ 160 (207)
+.|.| .+.|++++..+....+ +.|..+..+|.|.|+|.|.|..+..
T Consensus 121 g~p~p--~i~W~~~g~~l~~~~~---------------~~i~~~~~~d~G~Y~C~a~N~~g~~ 166 (176)
T 1hng_A 121 EGTDV--ELKLYQGKEHLRSLRQ---------------KTMSYQWTNLRAPFKCKAVNRVSQE 166 (176)
T ss_dssp SCSSC--EEEEEETTEEEEEESS---------------SEEEEECSCCSSCEEEEEEETTEEE
T ss_pred CCCCc--EEEEEECCEECCCCCc---------------EEEEEEEccCCeEEEEEEEecCCCc
Confidence 98887 9999999998865432 3344677999999999999985443
No 104
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.77 E-value=7.3e-18 Score=122.40 Aligned_cols=155 Identities=18% Similarity=0.226 Sum_probs=101.4
Q ss_pred CeeEEccCCccceeeEEEEe-------C---CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-----ceeeeE
Q psy3475 1 VSWIRKRDLHILTVGILTYT-------N---DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-----KISIGY 65 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-------~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~ 65 (207)
|.|||+..+.......+... . .+|+.+..+. .+.++|.|.+++.+|+|.|+|.+.+.. ......
T Consensus 33 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~ 111 (246)
T 4dzb_B 33 MFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS-LTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGT 111 (246)
T ss_dssp EEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEE-TTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCE
T ss_pred EEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecC-CCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCE
Confidence 58999876655444333321 0 1688876543 457899999999999999999998532 233456
Q ss_pred EEEEEe------ccce-EecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEE------ec-cc
Q psy3475 66 KLNVVI------SKAK-IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVT------EK-QT 131 (207)
Q Consensus 66 ~l~v~~------~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~------~~-~~ 131 (207)
.|.|.. +|.+ +..+....+..|+.+.|.|.+.+.+++...+.|+++|..+............ ++ ..
T Consensus 112 ~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~ 191 (246)
T 4dzb_B 112 RLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA 191 (246)
T ss_dssp EEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEE
T ss_pred EEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEE
Confidence 777764 2322 2233444455699999999999976555589999999887542110000000 00 11
Q ss_pred ceEEEEEEecccCC-CeEEEEEeecC
Q psy3475 132 RTSRLVISKAVTSD-SGNYTCAPSSS 156 (207)
Q Consensus 132 ~~~~l~i~~~~~~d-~g~Y~C~~~n~ 156 (207)
..+.|.|.....+| .|.|+|.|.|.
T Consensus 192 ~~s~l~i~~~~~~d~~g~YtC~v~~~ 217 (246)
T 4dzb_B 192 LSSRLRVSATFWQNPRNHFRCQVQFY 217 (246)
T ss_dssp EEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred EEEEEEECHHHhccCCCeEEEEEEec
Confidence 12458888888888 99999999997
No 105
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.77 E-value=4.4e-18 Score=121.99 Aligned_cols=133 Identities=24% Similarity=0.419 Sum_probs=93.6
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccc---eEe--cCcceEEecCCcEEEEEEEeeCCCCCcEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKA---KII--GNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~---~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~ 109 (207)
.+|.|.+++.+|+|.|+|.+.+. +.......|.|...+. ... .+....+..|+.+.|.|.+.+.|.+ .+.|+
T Consensus 76 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p--~v~W~ 153 (231)
T 3ojm_B 76 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP--HIQWI 153 (231)
T ss_dssp TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCC--EEEEE
T ss_pred ceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCC--EEEEE
Confidence 48999999999999999999874 3456677777775321 222 1456778899999999999998877 89999
Q ss_pred e----CCEEEEecCCCceEEEEec---ccceEEEEEEecccCCCeEEEEEeecCCC---CeEEEEEecCCc
Q psy3475 110 R----GANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVLNGKK 170 (207)
Q Consensus 110 ~----~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~---~~~~~~v~~~~~ 170 (207)
+ ++..+.............. ......|.|.++..+|.|.|+|.+.|..+ ..+.+.|...+.
T Consensus 154 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 224 (231)
T 3ojm_B 154 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ 224 (231)
T ss_dssp EECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-
T ss_pred ECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCC
Confidence 8 6766544332222222111 22345799999999999999999999833 344555554433
No 106
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.77 E-value=1.4e-17 Score=123.45 Aligned_cols=144 Identities=18% Similarity=0.232 Sum_probs=101.7
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC--ceeeeEEEEEE----eccc
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVV----ISKA 74 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~----~~~~ 74 (207)
|.||+.++... ..+.++.+..+. .|.|.+++.+|+|.|+|.+.+.. .....+.|.|. .+|.
T Consensus 122 v~W~~~~~~~~--------~~~~~~~~~~~~-----~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~ 188 (289)
T 3ejj_X 122 VSLMREGGRQV--------LRKTVYFFSPWR-----GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQ 188 (289)
T ss_dssp EEEEEGGGEEC--------CTTCCEEEETTT-----EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCE
T ss_pred EEEEecCCeec--------CCCccEEECCCC-----CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCe
Confidence 46887543211 234566554333 69999999999999999998432 34567788887 4566
Q ss_pred eEecCcceEEecCCcEEEEEEEee-CCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 75 KIIGNSELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 75 ~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
+...+....+..|+.+.|.|.+.+ .|.+ .+.|++++..+....... ...........|.|.+++.+|.|.|+|.|
T Consensus 189 i~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 264 (289)
T 3ejj_X 189 IKLEPSKLVRIRGEAAQIVCSATNAEVGF--NVILKRGDTKLEIPLNSD--FQDNYYKKVRALSLNAVDFQDAGIYSCVA 264 (289)
T ss_dssp EEEESSSEECCSSSCEEEEEEEEESSSCC--EEEEEETTEECCCCEEEE--ECSSSEEEEEEEEESSCCSSSCEEEEEEE
T ss_pred EEecCCceEEEeCCcEEEEEEeCCCCCce--EEEEEECCEEeeccCCcc--cccceEEeeEEEEEEeecccCCEEEEEEE
Confidence 666677777778999999999998 5666 899999998775432100 00000123568999999999999999999
Q ss_pred ecCCCCeE
Q psy3475 154 SSSDGASV 161 (207)
Q Consensus 154 ~n~~~~~~ 161 (207)
.|..+...
T Consensus 265 ~N~~G~~~ 272 (289)
T 3ejj_X 265 SNDVGTRT 272 (289)
T ss_dssp ECSSCEEE
T ss_pred EcCCCCcc
Confidence 99955443
No 107
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=137.19 Aligned_cols=111 Identities=15% Similarity=0.153 Sum_probs=88.6
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecC--cceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGN--SELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN 113 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~ 113 (207)
.+|.|.+++.+|+|.|+|.+.|. ....+.|.|..+|.+...+ ....+..|+.+.|.|.+.+.|.| .+.|+++|.
T Consensus 290 ~~L~I~~v~~~DsG~Y~C~a~N~--~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~k~g~ 365 (527)
T 3qs9_E 290 LFAFVSSVARNDTGYYTCSSSKH--PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI--RCTWTFSRK 365 (527)
T ss_dssp EEEEESSCCGGGCEEEEEEETTE--EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCC--EEEEEETTE
T ss_pred EEEEEccCCcccCeEEEEEEEeC--CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCC--EEEEEECCE
Confidence 37999999999999999999876 6677888888777654443 24566789999999999999888 899999999
Q ss_pred EEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 114 VVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
.+...... ......|.|.++..+|+|.|+|.|.|..+
T Consensus 366 ~l~~~~~~--------~~~~~~L~I~~v~~~D~G~YtC~A~N~~g 402 (527)
T 3qs9_E 366 SFPCEQKG--------LDNGYSISKFCNHKHQPGEYIFHAENDDA 402 (527)
T ss_dssp EEECBCCB--------CSSSSEEEEECCCTTCCSCEEEEEEETTE
T ss_pred ECcCCccc--------ccCCcEEEEecCCcccCEEEEEEEEeCCC
Confidence 88654331 11345799999999999999999999843
No 108
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.77 E-value=2.8e-17 Score=117.86 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=77.2
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCC
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGA 112 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~ 112 (207)
+.++|.|.+++.+|+|.|+|.+.|... .....+.+..++.....+....+..|+.+.|.|.+.+. |.| .+.|++++
T Consensus 81 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~-~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p--~i~W~k~~ 157 (226)
T 4f80_A 81 GKAALRIHNVTASDSGKYLCYFQDGDF-YEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQP--QIQWSNNK 157 (226)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCC--EEEEECTT
T ss_pred CeEEEEEeeCchHHCeeEEEEEECCCc-EEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCC--EEEEEECC
Confidence 567899999999999999999987432 33445555554444444455667789999999999985 777 89999854
Q ss_pred -EEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 113 -NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 113 -~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
..+..... .. ..+.......+.+..++.+|.|.|+|.|.|..+.
T Consensus 158 ~~~~~~~~~-~~--~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~ 202 (226)
T 4f80_A 158 GENIPTVEA-PV--VADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLG 202 (226)
T ss_dssp SCBCCCEEC-CC--EECTTSCEEEEEEEEECC----CEEEEEEETTTT
T ss_pred ceEcCCCce-EE--EECCCCcEEEEEEEEechhcCcEEEEEEEeCCCC
Confidence 43332211 11 1111112233445567789999999999998543
No 109
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.77 E-value=1e-17 Score=124.28 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=93.6
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeC
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLET 99 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 99 (207)
+.++.+..++ ....|.|.+++.+|+|.|+|.+.+... ....+.|.|..++.+...+....+..|+.+.|.|.+.+.
T Consensus 48 ~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~ 125 (291)
T 2wim_A 48 TQRVVVQKEG--VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSS 125 (291)
T ss_dssp BTTEEEEEET--TEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCS
T ss_pred CCcEEEecCC--CEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccC
Confidence 3455544433 356899999999999999999987433 245667777777766555667778899999999999988
Q ss_pred CCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 100 PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 100 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
|.+ .+.|++++..+......++... ....|.|.++..+|.|.|+|.+.|..
T Consensus 126 p~~--~v~W~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~ 176 (291)
T 2wim_A 126 PAP--AVSWLYHNEEVTTISDNRFAML-----ANNNLQILNINKSDEGIYRCEGRVEA 176 (291)
T ss_dssp SCC--EEEEECC----CBCCCSSEEEC-----TTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred CCC--EEEEEECCccccccCCceEEEc-----cCCCEEEEecchhhCEEEEEEEEECC
Confidence 777 8999999887765333333322 23479999999999999999999874
No 110
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.77 E-value=5.1e-19 Score=129.57 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=85.7
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc----------
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK---------- 60 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---------- 60 (207)
|.|||+.++..+....+.+. ..+||.+..+...+.++|.|.+++.+|+|.|+|.+.+...
T Consensus 34 v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~ 113 (257)
T 3bn9_D 34 MSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVS 113 (257)
T ss_dssp EEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTC
T ss_pred EEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCcccccccccc
Confidence 58999987655444333321 2578988776656788999999999999999999986421
Q ss_pred ----eeeeEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEec-c
Q psy3475 61 ----ISIGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEK-Q 130 (207)
Q Consensus 61 ----~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~ 130 (207)
......|.|.. +|.+........+..|+.++|.|.+.+. |.+ ..+.|++++..+......... ..++ .
T Consensus 114 ~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~p-i~v~W~k~g~~~~~~~~~~~~-~~~g~y 191 (257)
T 3bn9_D 114 PFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP-VTVSWNSGALTSGVHTFPAVL-QSSGLY 191 (257)
T ss_dssp CEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSC-CEEEETTTTCCSSCEECCCEE-CTTSCE
T ss_pred eeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCC-cEEEEeeCCCcCCcEecCCeE-cCCCCE
Confidence 12345777764 2322222222235678999999999986 443 389999987653211000000 0000 1
Q ss_pred cceEEEEEEecccCCCeEEEEEeecC
Q psy3475 131 TRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 131 ~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
...+.|.|.....+| |.|+|.|.|.
T Consensus 192 ~~~s~L~I~~~~~~~-g~YtC~v~n~ 216 (257)
T 3bn9_D 192 SLSSVVTVPSSSLGT-QTYICNVNHK 216 (257)
T ss_dssp EEEEECCCC--------CEEEEEEEG
T ss_pred EEEEEEEEcccccCC-CeEEEEEEec
Confidence 123567887777777 9999999997
No 111
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.77 E-value=5.4e-18 Score=127.29 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=89.2
Q ss_pred EEEEcccCCCCCeEEEEEEecCC---ceeeeEEEEEEeccceEec-CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP---KISIGYKLNVVISKAKIIG-NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA 112 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~ 112 (207)
.|.|.+...+|.|.|+|.+.|.. .....+.|.|..+|.+... .....+..|+.+.|.|.+.+.|.|. .+.|++++
T Consensus 178 ~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~-~v~W~~~~ 256 (313)
T 4fqp_A 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPT-GYNWSTTM 256 (313)
T ss_dssp EEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCC-EEEEEETT
T ss_pred eeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCc-EEEEEECC
Confidence 68999999999999999998732 2455667777777765433 4445566789999999999987773 58999998
Q ss_pred EEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC---eEEEEEec
Q psy3475 113 NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA---SVVVHVLN 167 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~---~~~~~v~~ 167 (207)
..+..... .....|.|.++..+|+|.|+|.|.|..+. .+.|.|..
T Consensus 257 ~~l~~~~~----------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 304 (313)
T 4fqp_A 257 GPLPPFAV----------AQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKE 304 (313)
T ss_dssp BSCCTTEE----------EETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred EECCCceE----------EeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 87643211 12357999999999999999999998443 34455543
No 112
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.77 E-value=7.4e-18 Score=119.11 Aligned_cols=121 Identities=14% Similarity=0.180 Sum_probs=84.9
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEeccceE-ecCcceEEecCCcEEEEEEEeeCCCC-CcEEEEEeC
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKI-IGNSELYIKSGSDINLTCVVLETPDP-PSFIYWYRG 111 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~~W~~~ 111 (207)
...|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+|..+ ..+. ..+..|+.++|.|.+.+.+++ ...+.|+++
T Consensus 53 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~ 131 (202)
T 1vca_A 53 TSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKG 131 (202)
T ss_dssp EEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEET
T ss_pred ccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeC
Confidence 3479999999999999999999853 35667788888766432 2232 557899999999999986433 237899999
Q ss_pred CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+..+....................|.|.....+|.|.|+|.|.|.
T Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~ 176 (202)
T 1vca_A 132 DHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLH 176 (202)
T ss_dssp TEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEEC
T ss_pred CeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEcc
Confidence 988754321000000000112345678888888999999999997
No 113
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.77 E-value=7e-18 Score=121.50 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=99.5
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC---------ce
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP---------KI 61 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---------~~ 61 (207)
|.|||+.++..+........ ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.+.. ..
T Consensus 34 v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~ 113 (230)
T 3n9g_H 34 MHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYW 113 (230)
T ss_dssp EEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEE
T ss_pred EEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChhhCEEEEEEEccCCCCccccccccc
Confidence 58999987766555444332 147999888777788999999999999999999998632 12
Q ss_pred eeeEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCC-ceEEEEec-ccceEE
Q psy3475 62 SIGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRG-GISVVTEK-QTRTSR 135 (207)
Q Consensus 62 ~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~-~~~~~~ 135 (207)
.....|.|.. +|.+........+..|+.+.|.|.+.+.++....+.| ++..+...... ......++ ....+.
T Consensus 114 ~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~ 191 (230)
T 3n9g_H 114 GQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSV 191 (230)
T ss_dssp CCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEE
T ss_pred CCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEE
Confidence 2445677742 2322222333334589999999999996543447899 44332110000 00000000 112357
Q ss_pred EEEEecccCCCeEEEEEeecCC
Q psy3475 136 LVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 136 l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
|.|.....+| |.|+|.|.+..
T Consensus 192 L~i~~~~~~~-~~ytC~v~h~~ 212 (230)
T 3n9g_H 192 VTVPSSSLGT-QTYICNVNHKP 212 (230)
T ss_dssp EEEESTTBTT-BCCEEEEEEGG
T ss_pred EEECHHHcCC-CeEEEEEEECC
Confidence 8999998889 99999999973
No 114
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.77 E-value=7.4e-18 Score=121.99 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=100.4
Q ss_pred CeeEEccCCccceeeEEEEe--------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec--C--CceeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT--------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST--E--PKISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~--~--~~~~~~~~l~ 68 (207)
|.|||+.++........... ..+|+.+..+ +.+.++|.|.+++.+|+|.|+|.+.+ . ........|.
T Consensus 33 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~ 111 (240)
T 3q5y_A 33 VVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF-DDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLT 111 (240)
T ss_dssp EEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC-TTSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEE
T ss_pred EEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC-CCCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEE
Confidence 58999877655443332221 1368887664 45688999999999999999999972 2 1234455677
Q ss_pred EEe------ccceE-ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCc--eEEEEec-ccceEEEEE
Q psy3475 69 VVI------SKAKI-IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG--ISVVTEK-QTRTSRLVI 138 (207)
Q Consensus 69 v~~------~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l~i 138 (207)
|.. +|... ..+....+..|+.+.|.|.+.+.+++...+.|+++|..+....... .....++ ....+.|.|
T Consensus 112 V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i 191 (240)
T 3q5y_A 112 VLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRV 191 (240)
T ss_dssp EESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEE
T ss_pred EeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEE
Confidence 763 23222 2233334556899999999999544444789999999875422110 0111111 112345888
Q ss_pred EecccCC-CeEEEEEeecC
Q psy3475 139 SKAVTSD-SGNYTCAPSSS 156 (207)
Q Consensus 139 ~~~~~~d-~g~Y~C~~~n~ 156 (207)
.....+| .|.|+|.|.|.
T Consensus 192 ~~~~~~d~~g~YtC~v~~~ 210 (240)
T 3q5y_A 192 SATFWHNPRNHFRCQVQFH 210 (240)
T ss_dssp EHHHHSCTTCEEEEEEEEC
T ss_pred CHHHhccCCCEEEEEEEcC
Confidence 8888888 67999999987
No 115
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.77 E-value=1.9e-18 Score=125.93 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=96.7
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-----------
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP----------- 59 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----------- 59 (207)
|.|||+.++..+......+. ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.+..
T Consensus 33 v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~ 112 (248)
T 3u2s_H 33 MHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRVEDTATYFCVREAGGPDYRNGYNYYD 112 (248)
T ss_dssp EEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECEEETTEEEEC
T ss_pred EEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeCCCCcccccccccc
Confidence 58999987766554444331 148899877766678899999999999999999997521
Q ss_pred ------------ceeeeEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCce
Q psy3475 60 ------------KISIGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGI 123 (207)
Q Consensus 60 ------------~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 123 (207)
.......|.|.. +|.+...+.......|+.+.|.|.+.+..++...+.|++++..+........
T Consensus 113 ~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~ 192 (248)
T 3u2s_H 113 FYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV 192 (248)
T ss_dssp GGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE
T ss_pred ccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEEEeeEECCCeEEEEeECCccCceeecCce
Confidence 123345666652 2222222333334568999999999986543448999987753211100000
Q ss_pred EEEEec-ccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 124 SVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 124 ~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
...++ ....+.|.|......| |.|+|.|.|..
T Consensus 193 -~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~ 225 (248)
T 3u2s_H 193 -LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 225 (248)
T ss_dssp -ECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGG
T ss_pred -ECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECC
Confidence 00000 1123578888888888 99999999973
No 116
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.77 E-value=1.1e-17 Score=128.86 Aligned_cols=114 Identities=27% Similarity=0.444 Sum_probs=95.3
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN 113 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~ 113 (207)
...|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++.
T Consensus 256 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~v~W~~~g~ 333 (382)
T 1cs6_A 256 EPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRP--AVRWLRDGQ 333 (382)
T ss_dssp SSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCC--EEEEEETTE
T ss_pred CcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCC--EEEEEECCE
Confidence 348999999999999999999874 44667788899888887777777888999999999999999888 899999999
Q ss_pred EEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 114 VVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
.+....+ +.. ....|.|.++..+|+|.|+|.|.|..+
T Consensus 334 ~~~~~~~--~~~------~~~~L~i~~v~~~d~G~Y~C~a~N~~G 370 (382)
T 1cs6_A 334 PLASQNR--IEV------SGGELRFSKLVLEDSGMYQCVAENKHG 370 (382)
T ss_dssp ECCCCSS--EEE------ETTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred ECCCCce--EEE------ECCEEEECcCCcccCEEEEEEEEeCCC
Confidence 8765433 222 134799999999999999999999843
No 117
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.76 E-value=5.9e-18 Score=130.69 Aligned_cols=114 Identities=26% Similarity=0.445 Sum_probs=93.2
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-Cc-eeeeEEEEEEeccceEecCcc-eEEecCCcEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PK-ISIGYKLNVVISKAKIIGNSE-LYIKSGSDINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~-~~~~~~l~v~~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
...|.|.+++.+|+|.|+|.+.|. +. ....+.|.|..+|.+...+.. ..+..|+.+.|.|.+.+.|.| .+.|+++
T Consensus 269 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~v~W~~~ 346 (395)
T 1bih_A 269 GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP--NVVWSHN 346 (395)
T ss_dssp TSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCC--CCEEEET
T ss_pred CceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCC--eeEEEEC
Confidence 347999999999999999999984 33 344889999998887776666 778899999999999998888 7999999
Q ss_pred CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+..+... ++... ...|.|.++..+|+|.|+|.|.|..+.
T Consensus 347 g~~~~~~---~~~~~------~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 385 (395)
T 1bih_A 347 AKPLSGG---RATVT------DSGLVIKGVKNGDKGYYGCRATNEHGD 385 (395)
T ss_dssp TEECCSS---SEEEE------TTEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred CEECCCC---ceEEE------CCEEEEeeCCcccCEEEEEEEEccCCC
Confidence 9887543 23221 238999999999999999999998443
No 118
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.76 E-value=3.9e-18 Score=123.82 Aligned_cols=155 Identities=18% Similarity=0.216 Sum_probs=99.6
Q ss_pred CeeEEccCCccceeeEEEEe-------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec-----CC--ceeeeEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT-------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST-----EP--KISIGYK 66 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-----~~--~~~~~~~ 66 (207)
|.|||+.++.......+... .++|+.+..+ ..+.++|.|.+++.+|+|.|+|.+.+ .. .......
T Consensus 33 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~ 111 (245)
T 3nfj_J 33 LYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRP-QDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSW 111 (245)
T ss_dssp EEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEE-ETTEEEEEESSCCGGGCEEEEEEEECCTTTSSCCCEECCCEE
T ss_pred EEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEec-CCCEEEEEECCCChhhCEEEEEEEeeccCCCceeEEECCCeE
Confidence 58999876655443332211 1367777654 34678999999999999999999987 11 2334557
Q ss_pred EEEEe------ccceE-ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEE------Eec-ccc
Q psy3475 67 LNVVI------SKAKI-IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV------TEK-QTR 132 (207)
Q Consensus 67 l~v~~------~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~------~~~-~~~ 132 (207)
|.|.. +|.+. ..+....+..|+.+.|.|.+.+.+++...+.|+++|..+........... .++ ...
T Consensus 112 l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (245)
T 3nfj_J 112 LTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYAL 191 (245)
T ss_dssp EEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSSSSTTCCEEE
T ss_pred EEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEEEECCEECCCCcccccccccccccCCCCCEEE
Confidence 77765 33222 22333334458999999999997555457899999988754211000000 000 112
Q ss_pred eEEEEEEecccCC-CeEEEEEeecC
Q psy3475 133 TSRLVISKAVTSD-SGNYTCAPSSS 156 (207)
Q Consensus 133 ~~~l~i~~~~~~d-~g~Y~C~~~n~ 156 (207)
.+.|.|......| .|.|+|.|.+.
T Consensus 192 ~s~L~i~~~~~~d~g~~YtC~v~~~ 216 (245)
T 3nfj_J 192 SSRLRVSATFWQNPRNHFRCQVQFY 216 (245)
T ss_dssp EEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred EEEEEECHHHhccCCCeEEEEEEEC
Confidence 3578888887777 66999999987
No 119
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.76 E-value=1.2e-17 Score=123.92 Aligned_cols=120 Identities=16% Similarity=0.255 Sum_probs=88.8
Q ss_pred EEEEcccCCCCCe-EEEEEEecCCce--eeeEEEEEE----eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEE
Q psy3475 37 TLKIASSQLRDSG-TYECQVSTEPKI--SIGYKLNVV----ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109 (207)
Q Consensus 37 ~L~i~~~~~~d~G-~Y~C~~~~~~~~--~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~ 109 (207)
.|.|.+++.+|+| .|+|.+.+.... +..+.|.|. .+|.+...+....+..|+.+.|.|.+.+.|.|. .+.|+
T Consensus 146 ~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~-~i~W~ 224 (290)
T 2o26_X 146 GITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSV-NSMWL 224 (290)
T ss_dssp EEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTC-EEEEE
T ss_pred CEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcce-eEEEe
Confidence 7999999999999 999999986443 345778776 556555556666788999999999999987772 49999
Q ss_pred eCCEEE----EecCCCceEEEEe-cccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 110 RGANVV----NYSQRGGISVVTE-KQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 110 ~~~~~~----~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+++..+ ...... ..... .......|.|.++..+|+|.|+|.|.|..+.
T Consensus 225 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~ 277 (290)
T 2o26_X 225 KMNPQPQHIAQVKHNS--WHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGS 277 (290)
T ss_dssp EESSSEEECCCEECCE--EEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCE
T ss_pred cCCCCCccceeecccc--cccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCc
Confidence 987663 222111 11100 0123568999999999999999999998443
No 120
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.76 E-value=6.4e-19 Score=124.51 Aligned_cols=121 Identities=25% Similarity=0.364 Sum_probs=90.0
Q ss_pred EEEEEcccCCCCCeEEEEEEecCC---ceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEE-eeCCCCCcEEEEEeC
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEP---KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV-LETPDPPSFIYWYRG 111 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~~W~~~ 111 (207)
.+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.....+....+..|+.+.|.|.+ .+.|.+ .+.|+++
T Consensus 68 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~v~W~~~ 145 (209)
T 1nbq_A 68 TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPS--EYTWFKD 145 (209)
T ss_dssp TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCC--EEEEEET
T ss_pred cEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCc--eeEEEEC
Confidence 389999999999999999998742 2456678888887766555555667899999999997 777777 9999999
Q ss_pred CEEEEecCCCceEEEEec---ccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 112 ANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+..+.............. ......|.|.++..+|.|.|+|.|.|..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 195 (209)
T 1nbq_A 146 GIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG 195 (209)
T ss_dssp TCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred CeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcC
Confidence 887765332100000000 11346899999999999999999999833
No 121
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.75 E-value=6.7e-19 Score=126.86 Aligned_cols=154 Identities=15% Similarity=0.169 Sum_probs=96.5
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc----eeeeEEEEEEe
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK----ISIGYKLNVVI 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~ 71 (207)
|.|||+..+..+....+.. ..++||.+.. ..+.++|.|.+++.+|+|.|+|.+.+... ......|.|..
T Consensus 53 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~ 130 (234)
T 2j6e_L 53 VYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK--SGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLG 130 (234)
T ss_dssp CEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE--ETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCC
T ss_pred EEEEEecCCCCcEEEEECccccCCCccccEEEEe--cCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEec
Confidence 6899986544332211100 1136777654 23567899999999999999999987433 22344555532
Q ss_pred ----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCC-ceEEEEec-ccceEEEEEEecccCC
Q psy3475 72 ----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRG-GISVVTEK-QTRTSRLVISKAVTSD 145 (207)
Q Consensus 72 ----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~i~~~~~~d 145 (207)
+|.+...+.......|+.++|.|.+.+.+++...+.|+++|..+...... ......++ ....+.|.|..+..+|
T Consensus 131 ~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d 210 (234)
T 2j6e_L 131 QPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKS 210 (234)
T ss_dssp CCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTT
T ss_pred CCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCC
Confidence 23322222222234588999999999865443489999999887532110 00000000 1234678899999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
.|.|+|.|.|.
T Consensus 211 ~G~Y~C~a~n~ 221 (234)
T 2j6e_L 211 HRSYSCQVTHE 221 (234)
T ss_dssp SCCEEEEEEBT
T ss_pred CCeEEEEEEeC
Confidence 99999999998
No 122
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.75 E-value=1.7e-17 Score=122.15 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=98.6
Q ss_pred CeeEEccCCccceeeEEEEeC---------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-----ceeeeEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTN---------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-----KISIGYK 66 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~ 66 (207)
|.|||+.++..+......... ++||.+.. ...+.++|.|.+++.+|+|.|+|.+.+.. .......
T Consensus 58 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~ 136 (270)
T 3qib_D 58 VFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAEC-PSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTR 136 (270)
T ss_dssp EEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEEC-CTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEE
T ss_pred EEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEe-CCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEE
Confidence 589998776554433322110 01787665 34567899999999999999999998521 2334557
Q ss_pred EEEEe------ccceE-ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEE------Eec-ccc
Q psy3475 67 LNVVI------SKAKI-IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV------TEK-QTR 132 (207)
Q Consensus 67 l~v~~------~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~------~~~-~~~ 132 (207)
|.|.. +|... ..+....+..|+.++|.|.+.+.+++...+.|+++|..+........... .++ ...
T Consensus 137 l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 216 (270)
T 3qib_D 137 LLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYAL 216 (270)
T ss_dssp EEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEE
T ss_pred EEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEE
Confidence 77765 33322 22333344569999999999995443347899999988754211000000 000 112
Q ss_pred eEEEEEEecccCC-CeEEEEEeecC
Q psy3475 133 TSRLVISKAVTSD-SGNYTCAPSSS 156 (207)
Q Consensus 133 ~~~l~i~~~~~~d-~g~Y~C~~~n~ 156 (207)
.+.|.|.....+| .|.|+|.+.|.
T Consensus 217 ~s~L~i~~~~~~d~~g~YtC~v~~~ 241 (270)
T 3qib_D 217 SSRLRVSATFWQNPRNHFRCQVQFY 241 (270)
T ss_dssp EEEEEEEHHHHHSTTCEEEEEEEEC
T ss_pred EEEEEEcHHHhccCCCeEEEEEEec
Confidence 2567888777777 99999999987
No 123
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.75 E-value=1.2e-16 Score=126.58 Aligned_cols=157 Identities=14% Similarity=0.115 Sum_probs=100.0
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-------ceee
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-------KISI 63 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-------~~~~ 63 (207)
|.|||+.++..+....+.+. ..+||.+..+...+.++|.|.+++.+|+|.|+|.+.+.. ....
T Consensus 35 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~ 114 (475)
T 1iga_A 35 LHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQ 114 (475)
T ss_pred EEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecC
Confidence 58999876655444333322 257888876655567899999999999999999998743 1234
Q ss_pred eEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeCCCC-CcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEE
Q psy3475 64 GYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDP-PSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLV 137 (207)
Q Consensus 64 ~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 137 (207)
.+.|.|.. +|.+...+ ......|+.+.|.|.+.+.+++ ...+.|++++...............++ ....+.|.
T Consensus 115 ~~~l~V~~~~~~~P~i~~~~-~~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~ 193 (475)
T 1iga_A 115 GTLVTVSSASPTSPKVFPLS-LCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLT 193 (475)
T ss_pred ceEEEeccCCCcCCeEEecC-ccccCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEE
Confidence 55777763 22222222 1122579999999999997333 338999987743211100000000000 11234688
Q ss_pred EEecccCCCeEEEEEeecCCC
Q psy3475 138 ISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 138 i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
|..+...|.|.|+|.|.|..+
T Consensus 194 i~~~~~~d~g~Y~C~a~n~~~ 214 (475)
T 1iga_A 194 LPATQCLAGKSVTCHVKHYTN 214 (475)
T ss_pred echhHcCCCceEEEEEEECCC
Confidence 888888999999999999854
No 124
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.75 E-value=5.9e-17 Score=114.13 Aligned_cols=130 Identities=21% Similarity=0.203 Sum_probs=87.9
Q ss_pred CCeEEEeecC-CCCcEEEEEcccCCCCCeEEEEEEecCCc-eeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeC
Q psy3475 22 DLRFTSLHSD-GSDEWTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLET 99 (207)
Q Consensus 22 ~~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 99 (207)
++|+.+..+. ..+..+|.|.+++.+|+|.|+|.+.+... ....+.|.|..++..... ....+..|+.+.|.|.+.+.
T Consensus 52 ~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~p~~-~~~~~~~g~~v~l~C~~~g~ 130 (202)
T 3bp6_B 52 SERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDT-RILEVPGTGEVQLTCQARGY 130 (202)
T ss_dssp CSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCEEE-EEEECTTTCCEEEEEEEEEB
T ss_pred CCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCCcceEEEEEEecCCCCcccE-EEEecCCCCeEEEEEEcccc
Confidence 3555544321 12456899999999999999999987433 466677777765421111 11234579999999999998
Q ss_pred CCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCe
Q psy3475 100 PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160 (207)
Q Consensus 100 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~ 160 (207)
|.| .+.|++++..+... ...........+.+..+..+|.|.|+|.|.|..+..
T Consensus 131 P~p--~v~W~~~~~~~~~~------~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~ 183 (202)
T 3bp6_B 131 PLA--EVSWQNVSVPANTS------HIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKE 183 (202)
T ss_dssp SCC--EEEETTCCSCCEEE------EEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTE
T ss_pred CCc--eEEEEeCCCCccCc------eeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCccc
Confidence 887 89999876644221 011112233566778889999999999999994443
No 125
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=130.41 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=85.5
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecC--cceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGN--SELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN 113 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~ 113 (207)
.+|.|.+++.+|+|.|+|.+.|. ....+.|.|..+|.+...+ ....+..|+.+.|.|.+.+.|.| .+.|+++|.
T Consensus 290 ~~L~I~~v~~~D~G~Y~C~A~N~--~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p--~i~W~k~g~ 365 (423)
T 3qs7_E 290 LFAFVSSVARNDTGYYTCSSSKH--PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI--RCTWTFSRK 365 (423)
T ss_dssp EEEEESSCCTTTCEEEEEEETTE--EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCC--EEEEEETTE
T ss_pred EEEEEeecCHHHCEEEEEEEecC--CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCC--eEEEEECCE
Confidence 37999999999999999999876 7778889998887665544 34566789999999999999888 899999999
Q ss_pred EEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 114 VVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
.+....... .....+.......+|+|.|+|.|.|..+
T Consensus 366 ~l~~~~~~~--------~~~~~~~~~~~~~~D~G~YtC~A~N~~G 402 (423)
T 3qs7_E 366 SFPCEQKGL--------DNGYSISKFCNHKHQPGEYIFHAENDDA 402 (423)
T ss_dssp EEECBCCBC--------SSSSEEEEECCCTTCCSCEEEEEEETTE
T ss_pred ECCCccccc--------cCCcEEEEEecccccCEEEEEEEEcCCc
Confidence 987643100 0011222245567899999999999943
No 126
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.75 E-value=9.6e-18 Score=119.55 Aligned_cols=151 Identities=20% Similarity=0.199 Sum_probs=93.6
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC----ceeeeEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP----KISIGYKL 67 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l 67 (207)
|.|||+..+..+....+.+. ..+|+.+..+...+.++|.|.+++.+|+|.|.|.+.+.. .......|
T Consensus 34 v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L 113 (215)
T 1c5d_H 34 VSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMV 113 (215)
T ss_dssp EEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEE
T ss_pred EEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEE
Confidence 58999876544443333221 247888876655567899999999999999999998742 22344677
Q ss_pred EEEe----ccceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEec
Q psy3475 68 NVVI----SKAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKA 141 (207)
Q Consensus 68 ~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~ 141 (207)
.|.. +|.+...+....+..|+.+.|.|.+.+. |.+ ..+.|++++..+....... ....+ ....+.|. ..
T Consensus 114 ~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~g~~~~~~~~~~--~~~~g~~~~~s~L~--~~ 188 (215)
T 1c5d_H 114 TVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEP-VTVTWNSGALSSDVHTFPA--VLQSGLYTLTSSVT--SS 188 (215)
T ss_dssp EECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSC-CEEEEGGGTTCCSCCBCCC--EEETTEEEEEEEEE--ES
T ss_pred EecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCC-cEEEEccCCccCceEecCc--ccCCCCEEEEEEEe--cc
Confidence 7763 2333322222234679999999999987 443 3899999876432111100 00000 00112233 44
Q ss_pred ccCCCeEEEEEeecCC
Q psy3475 142 VTSDSGNYTCAPSSSD 157 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~~ 157 (207)
..+| |.|+|.|.|..
T Consensus 189 ~~~~-g~ytC~v~n~~ 203 (215)
T 1c5d_H 189 TWPS-QTVTCNVAHPA 203 (215)
T ss_dssp STTT-SCCEEEEEEGG
T ss_pred cCCC-CeEEEEEEeCC
Confidence 4456 99999999973
No 127
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.75 E-value=6e-17 Score=121.17 Aligned_cols=141 Identities=12% Similarity=0.181 Sum_probs=99.8
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEe---------
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI--------- 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~--------- 71 (207)
|.|||.+.. ...+.|+.+..++ +..+|.|.+++.+|+|.|+|.+.+.........+.|..
T Consensus 34 v~W~k~~~~---------i~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l~v~~~~~~~~~~~ 102 (312)
T 2y23_A 34 FSWSKDYVS---------TEDSPRLEVESKG--NKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSH 102 (312)
T ss_dssp EEEEETTEE---------CTTCTTEEEEEET--TEEEEEESSCCGGGCEEEEEEESSSCCCCEEEEECHHHHHHHHHHHH
T ss_pred EEEEECCEE---------CCCCCCEEEEEeC--CEEEEEECcCCccCCEEEEEEEEeCCCcEEEEEEEEeeeeeeecccc
Confidence 578885421 1234567665433 35689999999999999999998754444455555542
Q ss_pred ---ccceEecC-cceEEecCCcEEEEEEEe-eCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCC
Q psy3475 72 ---SKAKIIGN-SELYIKSGSDINLTCVVL-ETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146 (207)
Q Consensus 72 ---~~~~~~~~-~~~~~~~g~~~~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 146 (207)
+|.....+ ....+..|+.+.|.|.+. +.|.+ .+.|++++..+....+ +....+.......|.|.++..+|.
T Consensus 103 ~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~--~v~W~~~~~~i~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~ 178 (312)
T 2y23_A 103 EHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNA--KVNYIFNEKEIFEGPK--YKMHIDRNTGIIEMFMEKLQDEDE 178 (312)
T ss_dssp HHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSC--EEEEEETTEEECSSSS--CEEEEETTTTEEEEEESCCCGGGC
T ss_pred cCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCC--EEEEEECCEECeeCCc--EEEEEccCCCEEEEEEccCCcccC
Confidence 33333333 367788999999999999 66666 8999999998876543 233322223456799999999999
Q ss_pred eEEEEEeecC
Q psy3475 147 GNYTCAPSSS 156 (207)
Q Consensus 147 g~Y~C~~~n~ 156 (207)
|.|+|.+.+.
T Consensus 179 G~Y~C~~~~~ 188 (312)
T 2y23_A 179 GTYTFQLQDG 188 (312)
T ss_dssp EEEEEEEESS
T ss_pred EeEEEEEEeC
Confidence 9999999876
No 128
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.75 E-value=1.6e-16 Score=115.36 Aligned_cols=155 Identities=18% Similarity=0.242 Sum_probs=90.3
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEee--------cCCCCcEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEe
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLH--------SDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVI 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~--------~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~ 71 (207)
|.|||+..........+.+..+. ..... ....++++|.|.+++.+|+|.|+|.+.+.. .....+.|.|..
T Consensus 40 v~W~k~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~ 118 (248)
T 3pv7_A 40 ITWFWKSLTFDKEVKVFEFFGDH-QEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA 118 (248)
T ss_dssp EEEEEECSSCCCEEEEEEEESSC-EEESSTTCBCCHHHHTTTBCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred EEEEEEcCCCCcceEEEEecCCc-ccccCCceEEEeccCCCCcEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEec
Confidence 57999765544333333332221 11111 112346679999999999999999998743 356677888888
Q ss_pred ccceEecCcceEEecCCcEEEEEEEee-CCCCCcEEEEEeCCEEEEec---CCCc--eEEEEec---ccceEEEEEEecc
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYS---QRGG--ISVVTEK---QTRTSRLVISKAV 142 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~~W~~~~~~~~~~---~~~~--~~~~~~~---~~~~~~l~i~~~~ 142 (207)
+|.+...+.. ....|+.+.|.|.+.+ .|.+ ..+.|++++..+... .... ....... ....+.|.+....
T Consensus 119 ~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~p-i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~ 196 (248)
T 3pv7_A 119 SPASRLLLDQ-VGMKENEDKYMCESSGFYPEA-INITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQ 196 (248)
T ss_dssp CCEEEEECC---------CEEEEEEEEEBSSC-CEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--C
T ss_pred CCceEEecCC-ccccCCCcEEEEEEccEECCC-eEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCcc
Confidence 7765544442 3445777889999999 4544 379999987532110 0000 0001100 1123568888888
Q ss_pred cCCCeEEEEEeecCCC
Q psy3475 143 TSDSGNYTCAPSSSDG 158 (207)
Q Consensus 143 ~~d~g~Y~C~~~n~~~ 158 (207)
.+|.|.|+|.|.|...
T Consensus 197 ~~d~g~YtC~a~n~~~ 212 (248)
T 3pv7_A 197 EDPGTVYQCVVRHASL 212 (248)
T ss_dssp CCTTCEEEEEEECTTC
T ss_pred ccCCCEEEEEEECCCC
Confidence 8999999999999833
No 129
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.75 E-value=6.7e-18 Score=125.25 Aligned_cols=125 Identities=22% Similarity=0.461 Sum_probs=93.0
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-c--eeeeEEEEEEeccceEecCc--ceEEecCCcEEEEEEE
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-K--ISIGYKLNVVISKAKIIGNS--ELYIKSGSDINLTCVV 96 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~l~v~~~~~~~~~~~--~~~~~~g~~~~l~C~~ 96 (207)
+.++.+..+. .|.|.+++.+|+|.|+|.+.+.. . ....+.+.|..+|.+...+. ...+..|+.+.|.|.+
T Consensus 144 ~~~~~~~~~~-----~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~ 218 (291)
T 2wim_A 144 DNRFAMLANN-----NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA 218 (291)
T ss_dssp CSSEEECTTS-----CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBC
T ss_pred CceEEEccCC-----CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEe
Confidence 4555544333 69999999999999999998743 2 34556777777776544333 3456789999999999
Q ss_pred eeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 97 ~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
.+.|.+ .+.|++++..+....+ +... .....|.|.++..+|+|.|+|.|.|..+.
T Consensus 219 ~g~p~p--~v~W~~~g~~~~~~~~--~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 273 (291)
T 2wim_A 219 SGSPEP--AISWFRNGKLIEENEK--YILK----GSNTELTVRNIINSDGGPYVCRATNKAGE 273 (291)
T ss_dssp CCBSCC--EEEEEETTEECCCTTT--EEEC----STTCEEEEESCCSTTCEEEEEEEEETTEE
T ss_pred ecCCCC--eEEEEECCEECcCCcc--EEEc----CCccEEEEeeCCcccCEEEEEEEEECCCc
Confidence 998877 8999999998765433 2211 23468999999999999999999999443
No 130
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.75 E-value=1.5e-18 Score=123.27 Aligned_cols=153 Identities=17% Similarity=0.210 Sum_probs=97.4
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec--CCc--eeeeEEEEEE-
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST--EPK--ISIGYKLNVV- 70 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~--~~~--~~~~~~l~v~- 70 (207)
|.|||+..+..+....+.. ..++|+.+... .+.++|.|.+++.+|+|.|+|.+.+ ... ......|.|.
T Consensus 31 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~ 108 (212)
T 1nfd_E 31 AYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTS--GTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLR 108 (212)
T ss_dssp CEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEE--TTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEEC
T ss_pred EEEEEECCCCCcEEEEEeccccCCCccccEEEEee--CCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEcc
Confidence 6899986554332211100 01467776542 3567899999999999999999985 222 2334566664
Q ss_pred ---eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecc--cceEEEEEEecccCC
Q psy3475 71 ---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQ--TRTSRLVISKAVTSD 145 (207)
Q Consensus 71 ---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d 145 (207)
.+|.+...+.......|+.+.|.|.+.+.+++...+.|+++|..+....... ....+.. ...+.|.|.++..+|
T Consensus 109 ~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~-~~~~~~~~~~~~s~L~i~~~~~~d 187 (212)
T 1nfd_E 109 GPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT-KPSKQGQNYMTSSYLSLTADQWKS 187 (212)
T ss_dssp CCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC-CCBCSSSCEEEEEBCCEEHHHHHT
T ss_pred CCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecC-CceecCCCceEEEEEEEchhhcCC
Confidence 2333333233333457999999999998733223899999998876432100 0000000 013568999999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
.|.|+|.|.|.
T Consensus 188 ~G~Y~C~a~n~ 198 (212)
T 1nfd_E 188 HNRVSCQVTHE 198 (212)
T ss_dssp CSCEEEEEECT
T ss_pred CCeEEEEEEeC
Confidence 99999999998
No 131
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=116.94 Aligned_cols=112 Identities=25% Similarity=0.404 Sum_probs=83.3
Q ss_pred EEEEcccCCCCCeEEEEEEecCC-ce---eeeEEEEEE-------eccceEecCcceEEecCCcEEEEEEEeeCCCCCcE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP-KI---SIGYKLNVV-------ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSF 105 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~-~~---~~~~~l~v~-------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~ 105 (207)
+|.|.+++.+|+|.|+|.+.+.. .. .....+.+. .+|.+...+....+..|+.+.|.|.+.+.|.+ .
T Consensus 67 ~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~ 144 (201)
T 3s97_C 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVP--D 144 (201)
T ss_dssp CEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCC--E
T ss_pred eEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCC--c
Confidence 79999999999999999998732 22 123344433 23444444557778899999999999998877 8
Q ss_pred EEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 106 IYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 106 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+.|++++..+..... .. .....|.|.++..+|.|.|+|.+.|..+
T Consensus 145 v~W~~~~~~~~~~~~----~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 189 (201)
T 3s97_C 145 IRWRKVLEPMPSTAE----IS----TSGAVLKIFNIQLEDEGIYECEAENIRG 189 (201)
T ss_dssp EEEEETTBCCCTTCE----EE----TTTTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred eEEEeCCCcCCCcee----ec----CCCCEEEEccCChhhCEEEEEEEEecCC
Confidence 999999886543211 11 1345899999999999999999999843
No 132
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.75 E-value=2.7e-17 Score=123.32 Aligned_cols=129 Identities=22% Similarity=0.306 Sum_probs=91.7
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEe--------------------ccceEec-Cc
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVI--------------------SKAKIIG-NS 80 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~--------------------~~~~~~~-~~ 80 (207)
.++.+.... +...|.|.+++.+|+|.|+|.+.|.. .....+.|.+.. ++.+... +.
T Consensus 153 ~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 230 (317)
T 2y25_A 153 DRVKTGVTG--EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD 230 (317)
T ss_dssp SSEEEEECS--SEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCS
T ss_pred CCeEEeccC--CEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCc
Confidence 455543322 35679999999999999999998743 344455554421 1222222 44
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
...+..|+.+.|.|.+.+.|.+ .+.|++++..+....+ +....+ ......|.|.+++.+|+|.|+|.|.|..+
T Consensus 231 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~~--~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g 303 (317)
T 2y25_A 231 VVTIQEGKALNLTCNVWGDPPP--EVSWLKNEKALASDDH--CNLKFE-AGRTAYFTINGVSTADSGKYGLVVKNKYG 303 (317)
T ss_dssp EEEEETTSBBCEEEEEECSSCC--EEEEEESSSEECCCSS--EEECCB-TTTEEEEEEBSCCSTTCEEEEEEEEETTE
T ss_pred cEEEEcCCEEEEEEEEecCCCC--EEEEEECCEeCCCCCc--EEEEEc-CCCEEEEEECCCCHHHCEEEEEEEEeCCC
Confidence 5678899999999999998888 8999999988865443 222211 12346899999999999999999999843
No 133
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.75 E-value=2.9e-17 Score=115.32 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=74.5
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCCc---eeeeEEEEEEec--cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEE
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEPK---ISIGYKLNVVIS--KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYW 108 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W 108 (207)
....|.|.+++.+|+|.|+|.+.+... .+..+.|.|..+ ++.+.......+..|+.++|.|.+.+.| + .+.|
T Consensus 56 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p-~--~~~W 132 (196)
T 2d3v_A 56 NKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF-D--RFIL 132 (196)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSCC-S--EEEE
T ss_pred cccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCC-C--EEEE
Confidence 456899999999999999999987432 245677888763 2222233334678899999999999876 5 8999
Q ss_pred EeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 109 YRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
++++..+....... . ..........|.|.+++.+|+|.|+|.+.|.
T Consensus 133 ~k~g~~~~~~~~~~-~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 178 (196)
T 2d3v_A 133 TEEGDHKLSWTLDS-Q-LTPSGQFQALFPVGPVTPSHRWMLRCYGSRR 178 (196)
T ss_dssp EEC---CCEEEEEC-E-ECTTSCEEEEEECCCCBTTBCEEEEEEEEET
T ss_pred EccCCccccccccc-c-cccCCCceeEEEeeecCcccCeeEEEEEEcc
Confidence 99988764221100 0 0000123468999999999999999999986
No 134
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.74 E-value=1.7e-16 Score=110.14 Aligned_cols=116 Identities=20% Similarity=0.262 Sum_probs=88.4
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCC-CCCcEEEEEe---
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETP-DPPSFIYWYR--- 110 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~~~W~~--- 110 (207)
...|.|. +.+|+|.|+|.+.+ .....+.|.|..+|.+...+....+..|+.+.|.|.+.+.| .+ .+.|++
T Consensus 50 ~~~l~i~--~~~d~G~Y~C~~~n--~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~--~i~W~~~~~ 123 (184)
T 3b5h_A 50 KTEFKVD--SDDQWGEYSCVFLP--EPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVT--DWAWYKITD 123 (184)
T ss_dssp EEEEEEC--GGGCCEEEEEEEES--TTSCEEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCC--EEEEEECCS
T ss_pred cEEEEEe--chhhCeEEEEEEEC--CcCcEEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCC--eEEEEEcCC
Confidence 3456666 68999999999987 33366788888888777777777788999999999999987 56 899999
Q ss_pred CCEE-EEecCCCceEEEEecccceEEEEEEecc-cCCCeEEEEEeecCCC
Q psy3475 111 GANV-VNYSQRGGISVVTEKQTRTSRLVISKAV-TSDSGNYTCAPSSSDG 158 (207)
Q Consensus 111 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~n~~~ 158 (207)
++.. +......++....+ .....|.|.++. .+|.|.|+|.|.|..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g 171 (184)
T 3b5h_A 124 SEDKALMNGSESRFFVSSS--QGRSELHIENLNMEADPGQYRCNGTSSKG 171 (184)
T ss_dssp SSCEECCTTGGGTEEEEEE--TTEEEEEECSCCTTTSSEEEEEEEEETTE
T ss_pred CCCEEeecCCCCEEEEEec--CCeeEEEEeeccccccCceEEEEEEeCCC
Confidence 4443 33333344444432 245689999999 8999999999999843
No 135
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.74 E-value=8.5e-18 Score=132.59 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=101.2
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-----------
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP----------- 59 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----------- 59 (207)
|.|||+.++..+....+.+. .++|+.+..+...+.++|.|.+++.+|+|.|+|.+.+..
T Consensus 34 v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~ 113 (457)
T 1hzh_H 34 IHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYY 113 (457)
T ss_dssp EEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCS
T ss_pred EEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccc
Confidence 58999876654444333321 257888877655567899999999999999999998742
Q ss_pred --ceeeeEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEe-c-c
Q psy3475 60 --KISIGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTE-K-Q 130 (207)
Q Consensus 60 --~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~-~ 130 (207)
.......|.|.. +|.+...+....+..|+.+.|.|.+.+. |. ...+.|++++..+..... ...... + .
T Consensus 114 ~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~-~~~v~W~k~~~~~~~~~~--~~~~~~~~~~ 190 (457)
T 1hzh_H 114 MDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNSGALTSGVHTF--PAVLQSSGLY 190 (457)
T ss_dssp CCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSC-CCEEEETTTTBCTTEEEE--EEEECTTSCE
T ss_pred cceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCC-CeEEEEEeCCEeccceEc--CceECCCCCE
Confidence 123456777764 3333333333345789999999999987 43 128999998853211000 000000 0 1
Q ss_pred cceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 131 TRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 131 ~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
...+.|.|.++..+| |.|+|.|.|..
T Consensus 191 ~~~s~L~i~~~~~~d-G~Y~C~a~n~~ 216 (457)
T 1hzh_H 191 SLSSVVTVPSSSLGT-QTYICNVNHKP 216 (457)
T ss_dssp EEEEEEEECSGGGGT-SCCEEEEEEGG
T ss_pred EEEEEEEecccccCC-ceEEEEEEeCC
Confidence 123579999999989 99999999973
No 136
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.74 E-value=2.1e-18 Score=124.27 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=83.6
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEe--
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVI-- 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~-- 71 (207)
|.|||++.+..+....+.. ...+|+.+.. ..+.++|.|.+++.+|+|.|+|.+.+... ......|.|..
T Consensus 55 v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~ 132 (233)
T 3bqu_C 55 MNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG--YGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRAD 132 (233)
T ss_dssp EEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE--EEEEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCC
T ss_pred EEEEEECCCCCcEEEEEcCCccCCCCCccEEeec--cCCEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCC
Confidence 5799987544332211100 0134554332 22355899999999999999999986432 22334566654
Q ss_pred -ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec---ccceEEEEEEecccCCCe
Q psy3475 72 -SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDSG 147 (207)
Q Consensus 72 -~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g 147 (207)
+|.+...+.......|+.++|.|.+.+.+++...+.|+++|..+............+. ....+.|.|.....+|.|
T Consensus 133 ~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g 212 (233)
T 3bqu_C 133 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN 212 (233)
T ss_dssp BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred CCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCC
Confidence 3333332332223469999999999996544347999999887653300000000000 112357889999999999
Q ss_pred EEEEEeecC
Q psy3475 148 NYTCAPSSS 156 (207)
Q Consensus 148 ~Y~C~~~n~ 156 (207)
.|+|.|.|.
T Consensus 213 ~Y~C~a~n~ 221 (233)
T 3bqu_C 213 SYTCEATHK 221 (233)
T ss_dssp CEEEEEEEC
T ss_pred CEEEEEEeC
Confidence 999999997
No 137
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.74 E-value=7.1e-17 Score=126.84 Aligned_cols=156 Identities=16% Similarity=0.226 Sum_probs=100.8
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-c---eeeeEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-K---ISIGYK 66 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~---~~~~~~ 66 (207)
|.|||+.++..+....+.+. ..+|+.+..+...+.++|.|.+++.+|+|.|+|.+.+.. . ....+.
T Consensus 34 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~ 113 (444)
T 1igt_B 34 MYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTT 113 (444)
T ss_dssp EEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEE
T ss_pred EEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEE
Confidence 58999876544443333221 246888877665667899999999999999999998743 2 234467
Q ss_pred EEEEe----ccceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEec
Q psy3475 67 LNVVI----SKAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141 (207)
Q Consensus 67 l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 141 (207)
|.|.. +|.+...+....+..|+.+.|.|.+.+. |.| ..+.|++++..+.......... .......+.|.|.++
T Consensus 114 l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~s~L~i~~~ 191 (444)
T 1igt_B 114 VTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEP-VTLTWNSGSLSSGVHTFPAVLQ-SDLYTLSSSVTVTSS 191 (444)
T ss_dssp EEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSC-CEEEEGGGTBCTTEEECCCEEE-TTEEEEEEEEEECST
T ss_pred EEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCC-cEEEEecCCCCCCeEecCcccc-CCcEEEEEEEEEchh
Confidence 77763 2333222222334689999999999986 443 3899999876521110000000 000112357889899
Q ss_pred ccCCCeEEEEEeecCCCC
Q psy3475 142 VTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~~~~ 159 (207)
..+| |.|+|.|.|..+.
T Consensus 192 ~~~d-g~Y~C~a~n~~~~ 208 (444)
T 1igt_B 192 TWPS-QSITCNVAHPASS 208 (444)
T ss_dssp TTTT-SCCEEEEEETTTT
T ss_pred hcCC-CeEEEEEEeCCCC
Confidence 8889 9999999998544
No 138
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.74 E-value=7.7e-18 Score=122.27 Aligned_cols=130 Identities=21% Similarity=0.315 Sum_probs=89.6
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc------eeeeEEEEEEec---cceEe-cCcceEEecCCcEE
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK------ISIGYKLNVVIS---KAKII-GNSELYIKSGSDIN 91 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~~---~~~~~-~~~~~~~~~g~~~~ 91 (207)
.+|+.+..+ +..+|.|.+++.+|+|.|+|.+.+... ....+.|.|..+ +.... .+....+..|+.+.
T Consensus 79 ~~r~~~~~~---~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~ 155 (250)
T 2fbo_J 79 LGRASVANL---AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDIT 155 (250)
T ss_dssp TTTEECSCT---TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEE
T ss_pred CceEEeccC---CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEE
Confidence 456654432 345799999999999999999987432 134677777664 22222 24456667899999
Q ss_pred EEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEE-----------Ee---c---ccceEEEEEEecccCCCeEEEEEee
Q psy3475 92 LTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV-----------TE---K---QTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 92 l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-----------~~---~---~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
|.|.+.+.|.| .+.|++++..+........... .. . ......|.|.++..+|+|.|+|.|.
T Consensus 156 L~C~~~g~p~p--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 233 (250)
T 2fbo_J 156 MTCPCTDCANA--NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELA 233 (250)
T ss_dssp ECCCEESCTTC--EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEecCCCCC--eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEec
Confidence 99999998888 9999998876543221100000 00 0 0022589999999999999999999
Q ss_pred cC
Q psy3475 155 SS 156 (207)
Q Consensus 155 n~ 156 (207)
|.
T Consensus 234 N~ 235 (250)
T 2fbo_J 234 TG 235 (250)
T ss_dssp SS
T ss_pred CC
Confidence 95
No 139
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.73 E-value=1.5e-17 Score=119.55 Aligned_cols=154 Identities=15% Similarity=0.162 Sum_probs=96.2
Q ss_pred CeeEEccCCccceeeEEEEeC----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC----------c
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP----------K 60 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----------~ 60 (207)
|.|||+.++..+....+.+.. .+||.+..+...+.++|.|.+++.+|+|.|.|.+.+.. .
T Consensus 34 v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~ 113 (226)
T 3mlr_H 34 IGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQASDTGKYFCTRLYLFEGAQSSNAFDL 113 (226)
T ss_dssp EEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEEEEESSSEEEEEEE
T ss_pred EEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCcccCEEEEEeEccCCCcccccchhhh
Confidence 589999877666555444331 37888877766678899999999999999999997532 1
Q ss_pred eeeeEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCC-CceEEEEec-ccceE
Q psy3475 61 ISIGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR-GGISVVTEK-QTRTS 134 (207)
Q Consensus 61 ~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~ 134 (207)
......|.|.. +|.+...+.......|+.+.|.|.+.+.++....+.| ++..+..... .......++ ....+
T Consensus 114 ~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s 191 (226)
T 3mlr_H 114 WGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSS 191 (226)
T ss_dssp ECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEE
T ss_pred hCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--CCccccCCeEeCCcEECCCCCEEEEE
Confidence 12334566642 2222212222234578999999999997543448999 3321110000 000000000 11235
Q ss_pred EEEEEecccCCCeEEEEEeecCC
Q psy3475 135 RLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 135 ~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
.|.|......| |.|+|.|.|..
T Consensus 192 ~L~i~~~~~~~-~~ytC~v~h~~ 213 (226)
T 3mlr_H 192 VVTVPSSSLGT-QTYICNVNHKP 213 (226)
T ss_dssp EEEEEGGGTTT-CCCEEEEEEGG
T ss_pred EEEECHhHcCC-CeEEEEEEECC
Confidence 78898888888 99999999973
No 140
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.73 E-value=5.2e-17 Score=115.94 Aligned_cols=134 Identities=16% Similarity=0.247 Sum_probs=85.8
Q ss_pred CCeEEEeecC-CCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEecc--ceEecCcceEEecCCcEEEEEEE-e
Q psy3475 22 DLRFTSLHSD-GSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISK--AKIIGNSELYIKSGSDINLTCVV-L 97 (207)
Q Consensus 22 ~~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~~~~g~~~~l~C~~-~ 97 (207)
.+|+.+..+. ..++++|.|.+++.+|+|.|+|.+.+.+.....+.|.|..++ +.+.......+..|+.+.|.|.+ .
T Consensus 57 ~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~ 136 (222)
T 4i0k_A 57 SNRTALFPDLLVQGNASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQ 136 (222)
T ss_dssp CSCEECCTTTGGGTBCCEEECSCCGGGCSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEE
T ss_pred eCcEEEecccccCCeEEEEECCcccccCEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEeccc
Confidence 4555543321 123568999999999999999999875444555566665542 22223334456789999999999 6
Q ss_pred eCCCCCcEEEEEe-CCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 98 ETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 98 ~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+.|.+ .+.|++ ++..+..... .............|.|.++..+|.|.|+|.+.|..+.
T Consensus 137 g~P~~--~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 195 (222)
T 4i0k_A 137 GYPEA--EVFWKDGQGVPLTGNVT--TSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQ 195 (222)
T ss_dssp EBSCC--EEEEECTTSCBCCSEEE--EEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTT
T ss_pred ccCCC--eEEEEcCCCccCCCCcc--eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCC
Confidence 77777 899998 4444322111 1111111223456889999999999999999998444
No 141
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.73 E-value=2.1e-16 Score=119.59 Aligned_cols=122 Identities=24% Similarity=0.326 Sum_probs=88.6
Q ss_pred EEEEcccCCCCCeEEEEEEecC---Cc----eeeeEEEEEEecc----ceEecCcceEEecCCcEEEEEEEeeCC--CCC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE---PK----ISIGYKLNVVISK----AKIIGNSELYIKSGSDINLTCVVLETP--DPP 103 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~---~~----~~~~~~l~v~~~~----~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~ 103 (207)
.|.|.+++.+|+|.|+|.+.|. +. ....+.|.|..++ ..+ .+....+..|+.+.|.|.+.+.| .+.
T Consensus 183 ~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~ 261 (329)
T 3oq3_B 183 NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDD 261 (329)
T ss_dssp EEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTC
T ss_pred EEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCC
Confidence 8999999999999999999964 12 2334778887766 333 56667888999999999999987 333
Q ss_pred cEEEEEeCCEEEEecCCCceEE-EEecccceEEEEEEecccCCCe-EEEEEeecCCCC
Q psy3475 104 SFIYWYRGANVVNYSQRGGISV-VTEKQTRTSRLVISKAVTSDSG-NYTCAPSSSDGA 159 (207)
Q Consensus 104 ~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~n~~~~ 159 (207)
..+.|++++..+.......... ..........|.|.+++.+|.| .|+|.|.|..+.
T Consensus 262 i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~ 319 (329)
T 3oq3_B 262 VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD 319 (329)
T ss_dssp CEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCE
T ss_pred cEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCc
Confidence 3789999888743222211111 0111124578999999999999 999999998443
No 142
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=123.49 Aligned_cols=120 Identities=18% Similarity=0.296 Sum_probs=88.3
Q ss_pred EEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR 110 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~ 110 (207)
.|.|.+++.+|+|.|+|.+.+... ....+.|.|.. +|.+...+....+..|+.+.|.|.+.+.+.+ ..+.|++
T Consensus 145 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~-~~~~w~~ 223 (292)
T 4dkd_C 145 GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVN-FDVFLQH 223 (292)
T ss_dssp CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSC-CEEECCB
T ss_pred eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCc-eEEEEeC
Confidence 499999999999999999987433 34578888886 6666666666666799999999999987643 3788888
Q ss_pred CCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 111 GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
++..+......+ ...........|.|.++..+|.|.|+|.|.|..+.
T Consensus 224 ~~~~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 270 (292)
T 4dkd_C 224 NNTKLAIPQQSD--FHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGK 270 (292)
T ss_dssp SSCCCCCCBEEE--EETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCE
T ss_pred CCcccccCccce--eccceeeeEEEEEECccChhcCeEEEEEEecCCCC
Confidence 876553322111 11000113468999999999999999999998443
No 143
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.73 E-value=1.7e-17 Score=117.52 Aligned_cols=122 Identities=22% Similarity=0.393 Sum_probs=89.4
Q ss_pred EEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEecc-ceEecCcceEEecCCcEEEEEEE-eeCCCCCcEEEEEeCCE
Q psy3475 38 LKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISK-AKIIGNSELYIKSGSDINLTCVV-LETPDPPSFIYWYRGAN 113 (207)
Q Consensus 38 L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~-~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~~W~~~~~ 113 (207)
|.|.+++.+|+|.|+|.+.+... ....+.|.|...+ .+...+....+..|+.+.|.|.+ .+.|.+ .+.|++++.
T Consensus 74 l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~v~W~~~~~ 151 (212)
T 2v9r_A 74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP--TISWKKDGS 151 (212)
T ss_dssp CCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCC--EEEEEETTE
T ss_pred EEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCC--EEEEEECCc
Confidence 55677899999999999987433 2456677776543 33344566778899999999998 787777 899999999
Q ss_pred EEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC----eEEEEEecC
Q psy3475 114 VVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA----SVVVHVLNG 168 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~----~~~~~v~~~ 168 (207)
.+..... ++.. ....|.|.++..+|.|.|+|.+.|..+. .+.|.|...
T Consensus 152 ~l~~~~~-~~~~------~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~ 203 (212)
T 2v9r_A 152 PLDDKDE-RITI------RGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER 203 (212)
T ss_dssp EECTTST-TEEE------ETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred cCCCCcc-eEEc------cCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeC
Confidence 8865432 2221 2347999999999999999999998332 356666543
No 144
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.73 E-value=1.8e-16 Score=119.69 Aligned_cols=126 Identities=19% Similarity=0.286 Sum_probs=89.5
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec--CCceeeeEEEEEEeccceEe--cCcceEEecC---CcEEEEE
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST--EPKISIGYKLNVVISKAKII--GNSELYIKSG---SDINLTC 94 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~--~~~~~~~~~l~v~~~~~~~~--~~~~~~~~~g---~~~~l~C 94 (207)
++|+.+. +...+..+|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..+|.... .+....+..| +.+.|.|
T Consensus 79 ~~r~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C 157 (331)
T 3u83_A 79 RERVEFL-RPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATC 157 (331)
T ss_dssp TTTEEES-SCSSSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEE
T ss_pred CCceEec-ccCCCCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEE
Confidence 4677655 2334566899999999999999998553 33456778888888776533 3556667778 7799999
Q ss_pred E-EeeCCCCCcEEEEEeC--CEEEEec---CCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 95 V-VLETPDPPSFIYWYRG--ANVVNYS---QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 95 ~-~~~~~~~~~~~~W~~~--~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
. ..+.|.+ .+.|+++ +...... ....+ ...+.|.|..+..+|.|.|+|.+.|..
T Consensus 158 ~~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 217 (331)
T 3u83_A 158 TSANGKPPS--VVSWETRLKGEAEYQEIRNPNGTV-------TVISRYRLVPSREAHQQSLACIVNYHM 217 (331)
T ss_dssp EEEEEBSCC--EEEEEESSCCEEEEEEEECTTSCE-------EEEEEEEECCCGGGTTCEEEEEEEETT
T ss_pred EecCCcCCc--eEEEEcCCCCccccceeECCCCcE-------EEEEEEEEEeccccCCCEEEEEEecCC
Confidence 7 7787777 8999984 3322111 11111 123578899999999999999999983
No 145
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.73 E-value=3.9e-18 Score=119.01 Aligned_cols=108 Identities=18% Similarity=0.298 Sum_probs=75.5
Q ss_pred EEEEcc-cCCCCCeEEEEEEecC-CceeeeEEEEEEe--ccceE--------------------ecCcc---eEEecCCc
Q psy3475 37 TLKIAS-SQLRDSGTYECQVSTE-PKISIGYKLNVVI--SKAKI--------------------IGNSE---LYIKSGSD 89 (207)
Q Consensus 37 ~L~i~~-~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~--~~~~~--------------------~~~~~---~~~~~g~~ 89 (207)
+|.|.+ ++.+|+|.|+|.+.|. +.......+.|.. ++... ..... ..+..|+.
T Consensus 45 ~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 124 (186)
T 1jbj_A 45 HLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGS 124 (186)
T ss_dssp EEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCE
T ss_pred EEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCe
Confidence 799999 9999999999999874 3333333333322 11100 00001 12338999
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCe
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~ 160 (207)
+.|.|.+ |.| .+.|+++|..+..... ....|.|.++..+|+|.|+|.|.|..+..
T Consensus 125 v~l~C~~---p~p--~i~W~k~g~~i~~~~~-----------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 125 VLLTCGL---TDK--TIKWLKDGSIISPLNA-----------TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp EEEECSS---SCS--CEEEEETTEECCCSSC-----------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred EEEEeeC---CCC--eEEEEECCEECcccCC-----------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 9999988 566 8999999998764322 34579999999999999999999985444
No 146
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.73 E-value=1.4e-16 Score=124.67 Aligned_cols=131 Identities=18% Similarity=0.313 Sum_probs=88.0
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEe--ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI--SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG-- 111 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~-- 111 (207)
..|.|.+++.+|+|.|+|.+.|..... ...+.+.. ++..+..+....+..|+.+.|.|.+.+.|.+...+.|+++
T Consensus 181 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~ 259 (438)
T 1qgc_4 181 STLTLTKDEYERHNSYTCEATHKTSTS-PIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTP 259 (438)
T ss_dssp EEEEEEHHHHHTCCEEEEEEEETTCSS-CEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEET
T ss_pred EEEEEeCcccCCCCeEEEEEEecccCC-ceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCC
Confidence 379999999999999999999843221 22333322 2233344556678899999999999998732237999985
Q ss_pred CEEEEe---------------cCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC--------CCCeEEEEEec
Q psy3475 112 ANVVNY---------------SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS--------DGASVVVHVLN 167 (207)
Q Consensus 112 ~~~~~~---------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~--------~~~~~~~~v~~ 167 (207)
+..+.. ....++....+.......|.|.+++.+|+|.|+|.+.|. .+....+.|..
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~ 338 (438)
T 1qgc_4 260 EKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSA 338 (438)
T ss_dssp TTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECS
T ss_pred CCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEec
Confidence 443321 112344444333334568999999999999999999983 22445666664
No 147
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.73 E-value=4.4e-17 Score=119.21 Aligned_cols=154 Identities=15% Similarity=0.177 Sum_probs=95.5
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-----------
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP----------- 59 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----------- 59 (207)
|.|||+.++..+....+... ..+|+.+..+...+.++|.|.+++.+|+|.|.|.+.+.+
T Consensus 57 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~ 136 (256)
T 3sob_H 57 IHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGSGHVNAVKNYGYVM 136 (256)
T ss_dssp EEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESSCTTCSSCCTTSE
T ss_pred EEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCCccccccccce
Confidence 57999987765555444332 147898877776678899999999999999999997532
Q ss_pred -ceeeeEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCC-CceEEEEec-ccc
Q psy3475 60 -KISIGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR-GGISVVTEK-QTR 132 (207)
Q Consensus 60 -~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~ 132 (207)
.......|.|.. +|.+........+..|+.+.|.|.+.+..+....+.| ++..+..... .......++ ...
T Consensus 137 ~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~ 214 (256)
T 3sob_H 137 DYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSL 214 (256)
T ss_dssp EEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEE
T ss_pred eEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEE
Confidence 123445666652 2222222333345679999999999996543447899 3332211000 000000000 112
Q ss_pred eEEEEEEecccCCCeEEEEEeecCC
Q psy3475 133 TSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 133 ~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
.+.|.|.....+| |.|+|.+.+..
T Consensus 215 ~s~L~i~~~~~~d-~~ytC~v~~~~ 238 (256)
T 3sob_H 215 SSVVTVPSSSLGT-QTYICNVNHKP 238 (256)
T ss_dssp EEEEEEEGGGTTT-CCCEEEEEEGG
T ss_pred EEEEEECHHHcCC-ceEEEEEEeCC
Confidence 3578899888889 99999999973
No 148
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.73 E-value=7.4e-17 Score=126.28 Aligned_cols=156 Identities=18% Similarity=0.216 Sum_probs=98.5
Q ss_pred CeeEEccCCccceeeEEE-----EeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEe--
Q psy3475 1 VSWIRKRDLHILTVGILT-----YTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVI-- 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~-----~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~-- 71 (207)
|.|||+..+..+....+. -..+.|+.+..+ .+.++|.|.+++.+|+|.|+|.+.+... ......|.|..
T Consensus 37 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~ 114 (438)
T 1qgc_4 37 MHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGS--RTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRAD 114 (438)
T ss_dssp EEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEE--TTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCC
T ss_pred EEEEEECCCCCcEEEEEECcccCCCccCcEEEEcc--CCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCC
Confidence 579998654433211100 012467776542 3467899999999999999999987432 34456677653
Q ss_pred -ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec---ccceEEEEEEecccCCCe
Q psy3475 72 -SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK---QTRTSRLVISKAVTSDSG 147 (207)
Q Consensus 72 -~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g 147 (207)
+|.+...+.......|+.+.|.|.+.+.+++...+.|+++|..+............+. ....+.|.|.++..+|+|
T Consensus 115 ~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 194 (438)
T 1qgc_4 115 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN 194 (438)
T ss_dssp BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred CCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCC
Confidence 3333332322223468899999999885433347999999987754311000000000 012458999999999999
Q ss_pred EEEEEeecCCC
Q psy3475 148 NYTCAPSSSDG 158 (207)
Q Consensus 148 ~Y~C~~~n~~~ 158 (207)
.|+|.|.|..+
T Consensus 195 ~Y~C~a~n~~~ 205 (438)
T 1qgc_4 195 SYTCEATHKTS 205 (438)
T ss_dssp EEEEEEEETTC
T ss_pred eEEEEEEeccc
Confidence 99999999843
No 149
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.73 E-value=1.1e-16 Score=118.56 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=96.9
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-------ceee
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-------KISI 63 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-------~~~~ 63 (207)
|.|||+.++..+....+... .++|+.+..+. .+.++|.|.+++.+|+|.|+|.+.+.. ....
T Consensus 56 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~ 134 (279)
T 2wbj_D 56 MFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS-LTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGP 134 (279)
T ss_dssp EEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECS-SSEEEEEESSCCGGGCEEEEEEEEETTCBTSCCEEECC
T ss_pred EEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCC-CCEEEEEEccCCccCCEEEEEEEcccccCCccceeeCC
Confidence 58999876554443333222 14788876643 467899999999999999999998721 1234
Q ss_pred eEEEEEEe------ccceEe-cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEE------Eec-
Q psy3475 64 GYKLNVVI------SKAKII-GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV------TEK- 129 (207)
Q Consensus 64 ~~~l~v~~------~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~------~~~- 129 (207)
...|.|.. +|.+.. .+....+..|+.+.|.|.+.+.+++...+.|++++..+........... .++
T Consensus 135 ~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~ 214 (279)
T 2wbj_D 135 GTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSR 214 (279)
T ss_dssp CEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEECCTTEEECSSCEESSTTSTTCC
T ss_pred CEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCc
Confidence 45777765 232221 2222334468999999999987443348999999987653211000000 000
Q ss_pred ccceEEEEEEecccCC-CeEEEEEeecC
Q psy3475 130 QTRTSRLVISKAVTSD-SGNYTCAPSSS 156 (207)
Q Consensus 130 ~~~~~~l~i~~~~~~d-~g~Y~C~~~n~ 156 (207)
....+.|.|......| .|.|+|.|.|.
T Consensus 215 ~~~~s~L~i~~~~~~d~~~~YtC~v~n~ 242 (279)
T 2wbj_D 215 YSLSSRLRVSATFWQNPRNHFRCQVQFY 242 (279)
T ss_dssp EEEEEEEECCSTTTTCTTCEEEEEEEEC
T ss_pred EEEEEEEEEChHHhccCCCEEEEEEEeC
Confidence 1123457777666654 67899999997
No 150
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.73 E-value=3.6e-16 Score=116.91 Aligned_cols=131 Identities=15% Similarity=0.247 Sum_probs=92.0
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEE---------------------eccceEecCc
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVV---------------------ISKAKIIGNS 80 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~---------------------~~~~~~~~~~ 80 (207)
+.++.+..+...+..+|.|.+++.+|+|.|+|.+.+. .......+.+. .+|.+. .+.
T Consensus 152 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~ 229 (312)
T 2y23_A 152 GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG-KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV-EYL 229 (312)
T ss_dssp SSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESS-SCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEE-EEE
T ss_pred CCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeC-CceEEEEEEEcchhhhhhcccccccccchhhccCCcee-ecc
Confidence 4566655555456678999999999999999999753 33333333331 012222 222
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCe
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~ 160 (207)
...+..|+.+.|.|.+.+.|.+. .+.|++++..+....+..+. .....|.|.++..+|+|.|+|.|.|..+..
T Consensus 230 ~~~v~~G~~~~l~C~~~~~p~~~-~v~W~~~g~~~~~~~~~~~~------~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~ 302 (312)
T 2y23_A 230 SWEVTGECNVLLKCKVANIKKET-HIVWYKDEREISVDEKHDFK------DGICTLLITEFSKKDAGIYEVILKDDRGKD 302 (312)
T ss_dssp EEEEETTTEEEEEEEEESCCSSC-EEEEEETTEEEEEECCC----------CEEEEEECSCSGGGCEEEEEEEESTTCCE
T ss_pred eEEEeCCCEEEEEEEEcCCCCCC-EEEEeeCCEECCCCCcEEEE------CCEEEEEECcCCHHHCEEEEEEEEcCCCce
Confidence 35678999999999999986653 78999999998765442221 134689999999999999999999995554
Q ss_pred E
Q psy3475 161 V 161 (207)
Q Consensus 161 ~ 161 (207)
.
T Consensus 303 ~ 303 (312)
T 2y23_A 303 K 303 (312)
T ss_dssp E
T ss_pred e
Confidence 3
No 151
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.73 E-value=6.2e-17 Score=117.10 Aligned_cols=155 Identities=14% Similarity=0.206 Sum_probs=94.6
Q ss_pred CeeEEccCCccceeeEEEEe--------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC----c--eeeeEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT--------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP----K--ISIGYK 66 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~--~~~~~~ 66 (207)
|.|||+.++..+....+... ..+||.+..+. .+.++|.|.+++.+|+|.|+|.+.+.. . ......
T Consensus 30 v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~ 108 (238)
T 1bec_A 30 MYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPS-QEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTR 108 (238)
T ss_dssp EEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCS-SSEEEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEE
T ss_pred EEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecC-CCEEEEEEecCCcccCEEEEEEEecCCCCccccccCCCEE
Confidence 58999876544332222111 24778765432 467899999999999999999998742 1 234456
Q ss_pred EEEEe------ccceEe-cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCC--ceEEEEec-ccceEEE
Q psy3475 67 LNVVI------SKAKII-GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRG--GISVVTEK-QTRTSRL 136 (207)
Q Consensus 67 l~v~~------~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l 136 (207)
|.|.. +|.+.. .+....+..|+.+.|.|.+.+.+++...+.|+++|..+...... ......++ ....+.|
T Consensus 109 l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L 188 (238)
T 1bec_A 109 LTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRL 188 (238)
T ss_dssp EEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEE
T ss_pred EEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEE
Confidence 77765 232222 23333455799999999999863333489999999887543210 00101111 0112344
Q ss_pred EEEecccCC-CeEEEEEeecC
Q psy3475 137 VISKAVTSD-SGNYTCAPSSS 156 (207)
Q Consensus 137 ~i~~~~~~d-~g~Y~C~~~n~ 156 (207)
.|......| .|.|+|.|.|.
T Consensus 189 ~i~~~~~~d~~~~ytC~v~~~ 209 (238)
T 1bec_A 189 RVSATFWHNPRNHFRCQVQFH 209 (238)
T ss_dssp CCCHHHHTCTTCEEEEEEEEC
T ss_pred EEcHHHhccCCCeEEEEEEcC
Confidence 554444444 67899999997
No 152
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=99.73 E-value=7.5e-16 Score=126.21 Aligned_cols=125 Identities=19% Similarity=0.307 Sum_probs=90.5
Q ss_pred EEEEEcccCCCCCeEEEEEEecCC--ceeeeEEEEEEecc--ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVISK--AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~--~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
++|.|.+++.+|+|.|+|.+.+.. .....+.|.|..++ +.+.......+..|+.+.|.|.+.+ |.+ .+.|+++
T Consensus 71 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~-p~~--~v~W~~~ 147 (642)
T 1e07_A 71 ASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPET-QDA--TYLWWVN 147 (642)
T ss_pred CcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEccCceeEecCCcEEEEEECCC-CCe--eEEEEEC
Confidence 379999999999999999998642 23455667776532 2233333455778999999999988 655 8999999
Q ss_pred CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC----CCeEEEEEecCC
Q psy3475 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD----GASVVVHVLNGK 169 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~----~~~~~~~v~~~~ 169 (207)
+..+....+ +... .....|.|.++..+|.|.|+|.+.|.. +..+.+.|...+
T Consensus 148 g~~l~~~~~--~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p 203 (642)
T 1e07_A 148 NQSLPVSPR--LQLS----NGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGP 203 (642)
T ss_pred CeECCCCCc--eEEc----CCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCC
Confidence 988765433 2221 134689999999999999999999973 334566666444
No 153
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-16 Score=127.32 Aligned_cols=120 Identities=17% Similarity=0.238 Sum_probs=82.7
Q ss_pred EEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccce-EecCcceE-EecCCcEEEEEEEeeCCCC--CcEEEEEe
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAK-IIGNSELY-IKSGSDINLTCVVLETPDP--PSFIYWYR 110 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~-~~~~~~~~-~~~g~~~~l~C~~~~~~~~--~~~~~W~~ 110 (207)
..|.|.+++.+| |.|+|.+.|. +.......|.|...|.. +..+.... +..|+.+.|.|.+.+.+++ ...+.|++
T Consensus 281 s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k 359 (523)
T 2rcj_C 281 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYV 359 (523)
T ss_pred EEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEE
Confidence 379999999999 9999999984 33445555655544443 33333333 6789999999999986532 24899999
Q ss_pred CCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 111 GANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
++..+.............+ ....+.|.|..+..+|.|.|+|.|.|.
T Consensus 360 ~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~ 406 (523)
T 2rcj_C 360 DGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNK 406 (523)
T ss_pred CCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCC
Confidence 9988765432111111111 112356889889999999999999987
No 154
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.72 E-value=1.5e-16 Score=111.61 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=82.7
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCCc---eeeeEEEEEEec---cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEE
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEPK---ISIGYKLNVVIS---KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIY 107 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~ 107 (207)
....|.|.+++.+|+|.|+|.+.|... ....+.|.|..+ |.+...+. ..+..|+.++|.|.+.+. .+ .+.
T Consensus 56 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~-~~--~~~ 131 (196)
T 3p2t_A 56 NKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPS-PLVTSGKSVTLLCQSRSP-MD--TFL 131 (196)
T ss_dssp SEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESC-SEECTTCCEEEEEEEEEE-EE--EEE
T ss_pred ceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCc-ceecCCCeEEEEEecCCC-CC--EEE
Confidence 346899999999999999999987433 355677777642 22322233 367899999999999884 33 789
Q ss_pred EEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 108 WYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 108 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|++++..+...... ..... ......|.|.+++.+|+|.|+|.+.|.
T Consensus 132 w~k~g~~~~~~~~~-~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 177 (196)
T 3p2t_A 132 LCKERAAHPLLCLR-SEHGA--QQHQAEFPMSPVTSVHGGTYRCFSSHG 177 (196)
T ss_dssp EEETTCCCGGGSEE-EEEEE--EEEEEEEEECSCCGGGCEEEEEEEECG
T ss_pred EEeCCCcccceeec-ccccc--cCcceEEEeCCCcccCCCeEEEEEEcC
Confidence 99988765332110 01000 123568999999999999999999997
No 155
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.72 E-value=3.1e-17 Score=123.82 Aligned_cols=112 Identities=17% Similarity=0.248 Sum_probs=87.8
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEec-CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIG-NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV 114 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~ 114 (207)
.|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+... +....+..|+.+.|.|.+.+.|.|. .+.|++++..
T Consensus 195 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~i~W~~~~~~ 273 (331)
T 3u83_A 195 RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPAT-EYHWTTLNGS 273 (331)
T ss_dssp EEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCC-EEEEEETTBS
T ss_pred EEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCC-EEEEEECCCc
Confidence 6999999999999999999985 34567788888877765543 3445577899999999999988772 3999998876
Q ss_pred EEecCCCceEEEEecccceEEEEEE-ecccCCCeEEEEEeecCCCC
Q psy3475 115 VNYSQRGGISVVTEKQTRTSRLVIS-KAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+..... . ....|.|. ++..+|.|.|+|.|.|..+.
T Consensus 274 ~~~~~~----~------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~ 309 (331)
T 3u83_A 274 LPKGVE----A------QNRTLFFKGPINYSLAGTYICEATNPIGT 309 (331)
T ss_dssp CCTTEE----E------ETTEEEECSCCCGGGCEEEEEEEEETTEE
T ss_pred ccccce----e------cCcEEEEeCCCccccCeEEEEEEEecccc
Confidence 643211 1 23579999 89999999999999998443
No 156
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.72 E-value=2e-16 Score=118.78 Aligned_cols=152 Identities=17% Similarity=0.246 Sum_probs=98.7
Q ss_pred CeeEEccCCcccee----eEEEEeCCCeEEEeecC---CCCcEEEEEcccCCCCCeEEEEEEecC--CceeeeEEEEEEe
Q psy3475 1 VSWIRKRDLHILTV----GILTYTNDLRFTSLHSD---GSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNVVI 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~----~~~~~~~~~r~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~ 71 (207)
|.|+|.+....... ....+....|+.+.... ..++++|.|.+++.+|+|.|+|.+.+. +.....+.|.+..
T Consensus 37 V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~ 116 (313)
T 4fqp_A 37 LTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA 116 (313)
T ss_dssp EEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBB
T ss_pred EEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeecc
Confidence 46999754322111 11123445666654322 224568999999999999999998653 3355666777777
Q ss_pred ccceEecCcceEEecCCcEEEEEEEe-eCCCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVL-ETPDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNY 149 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y 149 (207)
+|.....+....+..++.+.+.|.+. +.|.+ .+.|++++..+..... .....++ ....+.|.|.....+|.|.|
T Consensus 117 ~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~--~i~W~~~~~~~~~~~~--~~~~~~~~~~~~s~l~i~~~~~~d~g~Y 192 (313)
T 4fqp_A 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPA--QITWHSDLGGMPNTSQ--VPGFLSGTVTVTSLWILVPSSQVDGKNV 192 (313)
T ss_dssp CCEEEEEECCBCCCSSCEEEEEEEEEEEBSCC--EEEEEETTCCEEEEEE--EECSSTTCEEEEEEEEECCCGGGTTCEE
T ss_pred CCcceecccceEeecCceEEEEEEccCccCCc--EEEeecCCccccccce--eeeecccccccceeeeecccccccCeeE
Confidence 77665555556666788888999876 45666 8999998876543211 0000000 11235688889999999999
Q ss_pred EEEeecC
Q psy3475 150 TCAPSSS 156 (207)
Q Consensus 150 ~C~~~n~ 156 (207)
+|.|.|.
T Consensus 193 ~C~a~n~ 199 (313)
T 4fqp_A 193 TCKVEHE 199 (313)
T ss_dssp EEEEECT
T ss_pred EEEEEcc
Confidence 9999997
No 157
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.72 E-value=5.7e-16 Score=111.06 Aligned_cols=118 Identities=22% Similarity=0.297 Sum_probs=84.4
Q ss_pred EEEEcccCCCCCeEEEEEEecC--CceeeeEEEEEEeccc---eEecCcceEEecCCcE-EEEEEE-eeCCCCCcEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE--PKISIGYKLNVVISKA---KIIGNSELYIKSGSDI-NLTCVV-LETPDPPSFIYWY 109 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~~~---~~~~~~~~~~~~g~~~-~l~C~~-~~~~~~~~~~~W~ 109 (207)
.|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|. +...+....+..|+.+ .|.|.+ .+.|.| .+.|+
T Consensus 78 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p--~i~W~ 155 (231)
T 2pet_A 78 RLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAP--KITWY 155 (231)
T ss_dssp CEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCC--EEEEE
T ss_pred eEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCC--EEEEE
Confidence 4999999999999999999874 3466777888887643 2223444556678887 999999 787777 89999
Q ss_pred eCCEEEEecCC--CceEEEEec-------ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 110 RGANVVNYSQR--GGISVVTEK-------QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 110 ~~~~~~~~~~~--~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+++..+..... .++...... ....+.|.|.....+|.|.|+|.|.|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 156 RNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp ETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred ECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 99998866541 122222110 001256888766666799999999994
No 158
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.72 E-value=1.2e-17 Score=118.88 Aligned_cols=114 Identities=18% Similarity=0.335 Sum_probs=85.3
Q ss_pred EEEEcccCCCCCeEEEEEEecCCce--eeeEEEEEEe-ccceEecCcceEEecCCcEEEEEEE-eeCCCCCcEEEEEeCC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPKI--SIGYKLNVVI-SKAKIIGNSELYIKSGSDINLTCVV-LETPDPPSFIYWYRGA 112 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~-~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~~W~~~~ 112 (207)
.|.|.+++.+|+|.|+|.+.+.... .....|.|.. ++.+...+....+..|+.+.|.|.+ .+.|.+ .+.|++++
T Consensus 70 ~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~--~v~W~~~g 147 (217)
T 2vr9_A 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP--TLIWIKDG 147 (217)
T ss_dssp SSCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCC--EEEEEETT
T ss_pred EEEeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCC--eEEEEECC
Confidence 3478899999999999999874332 3456666665 3444445666778899999999999 787777 89999999
Q ss_pred EEEEecCC------CceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 113 NVVNYSQR------GGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 113 ~~~~~~~~------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
..+..... .+.... ....|.|.++..+|.|.|+|.|.|..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~N~~ 193 (217)
T 2vr9_A 148 VPLDDLKAMSFGASSRVRIV-----DGGNLLISNVEPIDEGNYKCIAQNLV 193 (217)
T ss_dssp EEECCCCCC---CCCSEEEE-----TTTEEEESSCCSTTCEEEEEEEEETT
T ss_pred cCCCcccccccccCCcEEec-----CCCcEEEeeCCHHHCeEEEEEEEccc
Confidence 98864221 111111 23479999999999999999999983
No 159
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.72 E-value=7.2e-17 Score=122.81 Aligned_cols=110 Identities=22% Similarity=0.346 Sum_probs=83.7
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEec----CcceEEecCCcEEEEEEE-----eeCCCCCcEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIG----NSELYIKSGSDINLTCVV-----LETPDPPSFI 106 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~----~~~~~~~~g~~~~l~C~~-----~~~~~~~~~~ 106 (207)
+|.|.+++.+|+|.|+|.+.+. +.....+.|.|..++..... +....+..|+.+.|.|.+ .+.|.+ .+
T Consensus 80 ~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~--~v 157 (349)
T 4dep_C 80 VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKP--TI 157 (349)
T ss_dssp EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCC--EE
T ss_pred EEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCc--eE
Confidence 7999999999999999999874 34566778888775532211 334566789999999985 555666 89
Q ss_pred EEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 107 YWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 107 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.|++++..+.... ++. . ....|.|.+++.+|+|.|+|.+.|.
T Consensus 158 ~W~k~~~~l~~~~--~~~--~----~~~~L~i~~v~~~d~G~Y~C~a~n~ 199 (349)
T 4dep_C 158 TWYMGCYKIQNFN--NVI--P----EGMNLSFLIALISNNGNYTCVVTYP 199 (349)
T ss_dssp EEEETTEECCSCS--SEE--E----ETTEEEEESCCGGGCEEEEEEEEEE
T ss_pred EEeeCCEECCCcc--cee--e----cCCEEEEeeeeecCCcEEEEEEEEe
Confidence 9999999774321 111 1 2357999999999999999999996
No 160
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.72 E-value=1.1e-17 Score=119.64 Aligned_cols=144 Identities=16% Similarity=0.194 Sum_probs=95.5
Q ss_pred CCeEEEeecC---CCCcEEEEEcccCCCCCeEEEEEEecC--CceeeeEEEEEEeccceEecCcceEEecCCcE-EEEEE
Q psy3475 22 DLRFTSLHSD---GSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNVVISKAKIIGNSELYIKSGSDI-NLTCV 95 (207)
Q Consensus 22 ~~r~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~-~l~C~ 95 (207)
.+|+.+..+. ..++++|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+...+.... ..|+.+ .|.|.
T Consensus 61 ~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~~~~~~~~-~~g~~~~~l~C~ 139 (221)
T 3eow_R 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ-LTGEPVPMARCV 139 (221)
T ss_dssp CSSCEEESSCSSCCCCCCEEECCCSSCCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEEEEEECCC-CCSSSCCEEEEE
T ss_pred CCcEEEecccCCCCCCCceEEEccCChHHCeEEEEEEEeCCCCceEEEEEEEEEECCCceeecCCcc-cCCceEEEEEEE
Confidence 5666655421 224669999999999999999999873 3456667777777766554333222 568888 59999
Q ss_pred Ee-eCCCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC-CCCeEEEEEecCCc
Q psy3475 96 VL-ETPDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS-DGASVVVHVLNGKK 170 (207)
Q Consensus 96 ~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~-~~~~~~~~v~~~~~ 170 (207)
+. +.|.| .+.|++++........ .....++ ....+.|.|..+..+|.|.|+|.|.|. ......+.+...+.
T Consensus 140 ~~~g~P~p--~v~W~k~~~~~~~~~~--~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~~~v~~~~~ 213 (221)
T 3eow_R 140 STGGRPPA--QITWHSDLGGMPQTSQ--VPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVY 213 (221)
T ss_dssp EESCSSCC--CEEEECSSSCCCCCEE--ECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCEEEEECCCCC
T ss_pred CCCccCCC--eeEEEeCCCCCCccce--eecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCeEEEEEEEEE
Confidence 88 66766 8999986432211000 0000000 223467999999999999999999998 44566666665443
No 161
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=99.72 E-value=6.5e-16 Score=126.56 Aligned_cols=115 Identities=29% Similarity=0.449 Sum_probs=90.0
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEeccce-EecCcceEEecCCcEEEEEEEee
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISKAK-IIGNSELYIKSGSDINLTCVVLE 98 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~ 98 (207)
+.++.+..+. ..|.|.+++.+|+|.|+|.+.|... .+..+.|.|..+|.. ...+....+..|+.+.|.|.+.+
T Consensus 332 ~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g 407 (642)
T 1e07_A 332 SPRLQLSNDN----RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAAS 407 (642)
T ss_pred cCCEEEeCCC----CEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCc
Confidence 3455544333 3899999999999999999998433 345678888766543 34455667789999999999999
Q ss_pred CCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 99 TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 99 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
.|.+ .+.|+++|..+.. ...|.|.++..+|.|.|+|.|.|..
T Consensus 408 ~p~~--~i~W~~~g~~~~~---------------~~~L~i~~~~~~d~G~Y~C~a~n~~ 449 (642)
T 1e07_A 408 NPPA--QYSWLIDGNIQQH---------------TQELFISNITEKNSGLYTCQANNSA 449 (642)
T ss_pred cCCC--eEEEEECCEEcCC---------------CceEEEccCChhhCeEEEEEEEcCC
Confidence 8877 8999999986632 2468999999999999999999983
No 162
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.72 E-value=8e-17 Score=120.53 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=86.8
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC--ceeeeEEEEEEeccceE--ecCcceEEecCCcEEEEEEE-e
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVISKAKI--IGNSELYIKSGSDINLTCVV-L 97 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~~~~--~~~~~~~~~~g~~~~l~C~~-~ 97 (207)
+|+.+. +...++++|.|.+++.+|+|.|+|.+.+.. .......+.+..++... ..+.......|+.+.|.|.. .
T Consensus 62 ~r~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~ 140 (308)
T 4fom_A 62 GRVLFK-NYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAAT 140 (308)
T ss_dssp TTEEES-CCSSSBCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEE
T ss_pred ceEEee-ccCCCceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecC
Confidence 455532 233356689999999999999999998743 34555666666655332 23444445567889999976 5
Q ss_pred eCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 98 ETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 98 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.|.+ .+.|++++..+....... ........+.|.|..+..+|.|.|+|.|.|.
T Consensus 141 g~P~~--~i~W~~~~~~~~~~~~~~---~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~ 194 (308)
T 4fom_A 141 GKPVA--HIDWEGDLGEMESTTTSF---PNETATIISQYKLFPTRFARGRRITCVVKHP 194 (308)
T ss_dssp EBSCC--EEEECCCSSBCCEEEEEC---TTSCEEEEEEEEECCCGGGTTCEEEEEEECT
T ss_pred CcCCc--eEEEEECCccccccccee---eeecccccccceEEeeeecCCccEEEEEEcc
Confidence 66767 899999887654321100 0000112357899999999999999999997
No 163
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.71 E-value=2.8e-16 Score=121.56 Aligned_cols=123 Identities=28% Similarity=0.470 Sum_probs=91.8
Q ss_pred EEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEeccc------eEecCcceEEecCCcEEEEEEEeeCCCCCcEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISKA------KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYW 108 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~------~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W 108 (207)
+|.|.+++.+|+|.|+|.+.+... ......+.|..++. ....+....+..|+.+.|.|.+.+.|.+ .+.|
T Consensus 178 ~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W 255 (403)
T 3laf_A 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPP--SFTW 255 (403)
T ss_dssp CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCC--EEEE
T ss_pred eEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCC--eEEE
Confidence 799999999999999999987432 34566777766542 2334556778899999999999998877 8999
Q ss_pred EeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC---CCeEEEEEec
Q psy3475 109 YRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD---GASVVVHVLN 167 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~---~~~~~~~v~~ 167 (207)
++++..+..... +.... ....|.|.++..+|.|.|+|.+.|.. .....+.+..
T Consensus 256 ~~~~~~~~~~~~-~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 311 (403)
T 3laf_A 256 LRGEEVIQLRSK-KYSLL-----GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV 311 (403)
T ss_dssp EETTEECCCSSS-SEEEE-----TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EECCeeccCCCc-eEEEC-----CccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC
Confidence 999988764332 11111 23579999999999999999999983 3344555544
No 164
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.71 E-value=2.6e-16 Score=114.83 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=95.2
Q ss_pred CeeEEccCCccceeeEEEEe--------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC----CceeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT--------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE----PKISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~----~~~~~~~~l~ 68 (207)
|.|||+..+..+....+... ..+|+.+..+. .+.++|.|.+++.+|+|.|+|.+.+. ........|.
T Consensus 34 v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~ 112 (252)
T 1oga_E 34 MYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREK-KESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLT 112 (252)
T ss_dssp EEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSS-TTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEE
T ss_pred EEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecC-CCEEEEEECcCChhhCEEEEEEEecCCccceeECCCEEEE
Confidence 58999876544333222111 24788876532 35678999999999999999999864 1123345677
Q ss_pred EEe------ccceEe-cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEE----Eec---ccceE
Q psy3475 69 VVI------SKAKII-GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV----TEK---QTRTS 134 (207)
Q Consensus 69 v~~------~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~----~~~---~~~~~ 134 (207)
|.. +|.+.. .+....+..|+.+.|.|.+.+..++...+.|+++|..+........... ... ....+
T Consensus 113 V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s 192 (252)
T 1oga_E 113 VTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSS 192 (252)
T ss_dssp EESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEE
T ss_pred EecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCCEEEEE
Confidence 764 232222 2333334468999999999986333348999999987753211000000 000 11234
Q ss_pred EEEEEecccC-CCeEEEEEeecC
Q psy3475 135 RLVISKAVTS-DSGNYTCAPSSS 156 (207)
Q Consensus 135 ~l~i~~~~~~-d~g~Y~C~~~n~ 156 (207)
.|.|...... +.|.|+|.+.|.
T Consensus 193 ~L~i~~~~~~d~~~~ytC~v~~~ 215 (252)
T 1oga_E 193 RLRVSATFWQNPRNHFRCQVQFY 215 (252)
T ss_dssp EEEEEHHHHTCTTCEEEEEEEEC
T ss_pred EEEECHHHhccCCCEEEEEEEcC
Confidence 5777766554 678999999998
No 165
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=99.71 E-value=4.4e-16 Score=130.79 Aligned_cols=106 Identities=25% Similarity=0.354 Sum_probs=90.3
Q ss_pred EEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV 115 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~ 115 (207)
+|.|.+++.+|+|.|+|.+.|. +.......|.|..++.....+....+..|+.+.|.|.+.+.|.+ .+.|+++|..+
T Consensus 307 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~--~v~W~k~g~~~ 384 (816)
T 3dmk_A 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK--TVSWMKDGKAI 384 (816)
T ss_dssp EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCC--EEEEEETTEEC
T ss_pred eEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCC--EEEEEECCEEC
Confidence 8999999999999999999874 44566677888877777677778888899999999999998877 89999999877
Q ss_pred EecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 116 NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
... ...|.|.+++.+|+|.|+|.+.|..+
T Consensus 385 ~~~--------------~~~L~i~~v~~~d~G~Y~C~a~n~~g 413 (816)
T 3dmk_A 385 GHS--------------ESVLRIESVKKEDKGMYQCFVRNDRE 413 (816)
T ss_dssp SCC--------------SSEEEESSCCGGGCEEEEEEEECSSC
T ss_pred CCC--------------CCEEEEcCCCHHHCEEEEEEEECCCC
Confidence 432 24799999999999999999999843
No 166
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.71 E-value=1.9e-16 Score=118.37 Aligned_cols=111 Identities=31% Similarity=0.499 Sum_probs=82.6
Q ss_pred EEEEcccCCCCCeEEEEEEecCCce--eeeEEEEEE---eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPKI--SIGYKLNVV---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
.|.|.+++.+|+|.|+|.+.|.... .....|.|. .+|.+...+....+..|+.+.|.|.+.+.|.| .+.|+++
T Consensus 165 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~~~ 242 (304)
T 2yd9_A 165 ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMP--YVKWMQG 242 (304)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCC--EEEEEET
T ss_pred EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCC--EEEEEEC
Confidence 7999999999999999999985432 222455554 45555555666778899999999999999888 8999999
Q ss_pred CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+..+...... ......|.+.++ +|+|.|+|.|.|..+.
T Consensus 243 ~~~l~~~~~~--------~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~ 280 (304)
T 2yd9_A 243 AEDLTPEDDM--------PVGRNVLELTDV--KDSANYTCVAMSSLGV 280 (304)
T ss_dssp TEECSCSSSC--------CBSEEEEEECSC--CSCEEEEEEEEETTEE
T ss_pred CEECCCcccc--------cCCcEEEEEccc--ccCEEEEEEEEeCCCc
Confidence 9887654321 112345666554 6899999999998443
No 167
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.71 E-value=2.9e-16 Score=110.35 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=79.6
Q ss_pred EEEEEcccCCCCCeEEEEEEecCC----ceeeeEEEEEEec--cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEP----KISIGYKLNVVIS--KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~ 109 (207)
..|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+ ++.+.......+..|+.+.|.|.+.+. .+ .+.|+
T Consensus 58 ~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~-~~--~v~W~ 134 (198)
T 1ugn_A 58 GQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA-FD--GFILC 134 (198)
T ss_dssp TEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSC-CS--EEEEE
T ss_pred cEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCC-Cc--EEEEE
Confidence 489999999999999999998753 2356678888762 122222333567899999999999887 45 89999
Q ss_pred eCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 110 RGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+++..+..... +..... .......|.|.+++.+|.|.|+|.|.|.
T Consensus 135 k~g~~~~~~~~-~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 179 (198)
T 1ugn_A 135 KEGEDEHPQCL-NSQPHA-RGSSRAIFSVGPVSPSRRWWYRCYAYDS 179 (198)
T ss_dssp EC------CEE-EC-------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred ECCCccCCccc-cccccC-CCcceeEEEecccCcccCeEEEEEEEeC
Confidence 99887643211 000000 0113478999999999999999999997
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.71 E-value=2.8e-17 Score=125.29 Aligned_cols=120 Identities=15% Similarity=0.191 Sum_probs=88.9
Q ss_pred CcEEEEEcccCCCCCe-EEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 34 DEWTLKIASSQLRDSG-TYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G-~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
...+|.|.+++.+|+| .|+|.+.+. +.....+.|.|..+|.+ .......|+.+.|.|.+.+.|.| .+.|+++
T Consensus 210 ~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p--~i~W~~~ 283 (347)
T 2ifg_A 210 PSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAP--SLRWLFN 283 (347)
T ss_dssp SEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCC--EEEEEET
T ss_pred ccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCC--cEEEEeC
Confidence 4568999999999999 999999874 33456667777776654 11223578999999999999888 8999999
Q ss_pred CEEEEecCCCceEEEE---ecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 112 ANVVNYSQRGGISVVT---EKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
|..+............ +.......|.|.+++.+|+|.|+|.|.|..+.
T Consensus 284 g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~ 334 (347)
T 2ifg_A 284 GSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ 334 (347)
T ss_dssp TEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCc
Confidence 9988743331111111 00123567999999999999999999998443
No 169
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.71 E-value=7.9e-17 Score=112.08 Aligned_cols=109 Identities=19% Similarity=0.205 Sum_probs=79.8
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCc---eeeeEEEEEEe---ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPK---ISIGYKLNVVI---SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~ 109 (207)
..|.|.+++.+|+|.|+|.+.+... .+..+.|.|.. +|.+...+ ...+..|+.+.|.|.+.+. .+ .+.|+
T Consensus 52 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~--~~~w~ 127 (184)
T 2gi7_A 52 AVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FD--QFALY 127 (184)
T ss_dssp SEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSC-CC--EEEEE
T ss_pred cEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCC-Cc--EEEEE
Confidence 3899999999999999999987432 34556777754 23333333 4456789999999997654 34 78999
Q ss_pred eCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 110 RGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+++..+..... . ......|.|.+++.+|.|.|+|.+.|.
T Consensus 128 k~g~~~~~~~~--~------~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 166 (184)
T 2gi7_A 128 KEGDPAPYKNP--E------RWYRASFPIITVTAAHSGTYRCYSFSS 166 (184)
T ss_dssp ECCCCTTSCCC--C------EEEEESSSEEEETTCCSEEEEEEEECT
T ss_pred ECCCcCcceec--C------CCceEEEEEccCCccCCeEEEEEEEeC
Confidence 99876543211 0 113467899999999999999999997
No 170
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.71 E-value=1.5e-15 Score=113.90 Aligned_cols=123 Identities=20% Similarity=0.265 Sum_probs=86.6
Q ss_pred EEEEcccCCCCCeEEEEEEe-cC-Cce---eeeEEEEEE-----eccceEecCc-ceEEecCCcEEEEEEEeeCCCCCcE
Q psy3475 37 TLKIASSQLRDSGTYECQVS-TE-PKI---SIGYKLNVV-----ISKAKIIGNS-ELYIKSGSDINLTCVVLETPDPPSF 105 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~-~~-~~~---~~~~~l~v~-----~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~ 105 (207)
.|.|.+++.+|+|.|+|.+. +. +.. ...+.+.+. .+|.+...+. ...+..|+.+.|.|.+.+.|.| .
T Consensus 163 ~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p--~ 240 (315)
T 1itb_B 163 RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSD--I 240 (315)
T ss_dssp EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTS--E
T ss_pred eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCC--e
Confidence 79999999999999999998 53 322 334444444 3343333333 2467899999999999998887 8
Q ss_pred EEEEeCCEEEEecCCCceEE--EEec------ccceEEEEEEecccCC-CeEEEEEeecCCCCeE
Q psy3475 106 IYWYRGANVVNYSQRGGISV--VTEK------QTRTSRLVISKAVTSD-SGNYTCAPSSSDGASV 161 (207)
Q Consensus 106 ~~W~~~~~~~~~~~~~~~~~--~~~~------~~~~~~l~i~~~~~~d-~g~Y~C~~~n~~~~~~ 161 (207)
+.|+++|..+.......... .... ......|.|.++..+| +|.|+|.|.|..+...
T Consensus 241 i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~ 305 (315)
T 1itb_B 241 AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDA 305 (315)
T ss_dssp EEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEE
T ss_pred eEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCcee
Confidence 99999999886544311111 0000 0124589999999999 9999999999955443
No 171
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.71 E-value=2.7e-17 Score=120.84 Aligned_cols=154 Identities=15% Similarity=0.174 Sum_probs=94.2
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC---------cee
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP---------KIS 62 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---------~~~ 62 (207)
|.|||+.++..+....+... ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.+.. ...
T Consensus 34 v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~ 113 (263)
T 3iu4_H 34 VHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQTDDTAMYYCARSGVREGRAQAWFAYWG 113 (263)
T ss_dssp EEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEECC---CEEEEEEEC
T ss_pred EEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCCHHHCEEEEEEEEeCCCCccccccceeC
Confidence 58999987766555444332 147999877776678899999999999999999997642 122
Q ss_pred eeEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCC-CceEEEEec-ccceEEE
Q psy3475 63 IGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR-GGISVVTEK-QTRTSRL 136 (207)
Q Consensus 63 ~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l 136 (207)
....|.|.. +|.+........+..|+.+.|.|.+.+.++....+.| ++..+..... .......++ ....+.|
T Consensus 114 ~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L 191 (263)
T 3iu4_H 114 QGTLVTVSAASTKGPSVFPLAPSSKGSTSGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVV 191 (263)
T ss_dssp CCEEEEECSSCCBCCEEEEECCCCCC----EEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEE
T ss_pred CceEEEEecccCCCCEEEEccCccccccCCcEEEEEEEEeEeCCceEEEE--CCcccCCceeecCceECCCCCEEEEEEE
Confidence 344666642 2322222222334578999999999997543348999 3322211000 000000000 1123578
Q ss_pred EEEecccCCCeEEEEEeecCC
Q psy3475 137 VISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 137 ~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
.|.....+| |.|+|.|.|..
T Consensus 192 ~i~~~~~~~-~~ytC~v~h~~ 211 (263)
T 3iu4_H 192 TVPSSSLGT-QTYICNVNHKP 211 (263)
T ss_dssp EEETTHHHH-CCCEEEEEEGG
T ss_pred EECHhHcCC-CEEEEEEEECC
Confidence 888888888 99999999983
No 172
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.71 E-value=1.6e-16 Score=108.81 Aligned_cols=105 Identities=22% Similarity=0.350 Sum_probs=82.2
Q ss_pred EEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVV 115 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~ 115 (207)
.+.|.+++.+|+|.|+|.+.+. .....+.|.|..++... .+....+..|+.+.|.|.+.+. +.+ .+.|++++..+
T Consensus 52 ~~~~~~~~~~d~G~Y~C~~~~~-~~s~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~g~~~ 127 (170)
T 3ry4_A 52 PSYRFKANNNDSGEYTCQTGQT-SLSDPVHLTVLFEWLVL-QTPHLEFQEGETIMLRCHSWKDKPLV--KVTFFQNGKSQ 127 (170)
T ss_dssp SEEEEECCGGGCEEEEEEETTS-BCCCCEEEEEECCSEEE-ECSCSEECTTCCEEEEEEEGGGCCEE--EEEEEETTEEE
T ss_pred ceEEEecccccCeEEEEEEeCC-CceEeEEEEEECCceEe-cCCCceeecCCeEEEEEECCCCCCCc--eEEEEECCeEc
Confidence 4778899999999999999853 34556788888766443 3445567889999999999654 334 89999999887
Q ss_pred EecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 116 NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
..... ...|.|.++..+|.|.|+|.+.|..
T Consensus 128 ~~~~~------------~~~L~i~~v~~~d~G~Y~C~a~n~~ 157 (170)
T 3ry4_A 128 KFSHL------------DPTFSIPQANHSHSGDYHCTGNIGY 157 (170)
T ss_dssp EEESS------------CCEEEESSCCGGGCEEEEEEEEETT
T ss_pred cccCC------------CCeEEEEeccccCCEEEEEEEEeCc
Confidence 64322 3579999999999999999999973
No 173
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.70 E-value=6e-16 Score=112.93 Aligned_cols=116 Identities=23% Similarity=0.342 Sum_probs=87.8
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEE-eeCCCCCcEEEEEeCCEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV-LETPDPPSFIYWYRGANV 114 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~~W~~~~~~ 114 (207)
..|.|.+++.+|+|.|+|.+.+. .....+.|.|..++.. ..+....+..|+.+.|.|.+ .+.+.+ .+.|++++..
T Consensus 48 ~~l~i~~~~~~d~G~Y~C~~~~~-~~s~~~~l~v~~~~~~-~~~~~~~~~~g~~v~l~C~~~~~~p~~--~v~W~~~g~~ 123 (262)
T 3rjd_A 48 PSYRITSASVNDSGEYRCQRGLS-GRSDPIQLEIHRGWLL-LQVSSRVFTEGEPLALRCHAWKDKLVY--NVLYYRNGKA 123 (262)
T ss_dssp SEEEESSCCGGGCEEEEEEESSS-CCCCCEEEEEECSSEE-EEESCSEEETTSCEEEEEEEGGGCCCE--EEEEEETTEE
T ss_pred CeEEEecCCcccCeEEEEEEecC-CccccEEEEEeccceE-ecCCCeEEecCCeEEEEEEccCCCCCc--eEEEEECCcc
Confidence 37999999999999999999763 3345677888766543 34445667899999999999 444444 8999999988
Q ss_pred EEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC---CCeEEEEEec
Q psy3475 115 VNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD---GASVVVHVLN 167 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~---~~~~~~~v~~ 167 (207)
+.... ....|.|.++..+|.|.|+|.+.|.. .....+.+..
T Consensus 124 ~~~~~------------~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~ 167 (262)
T 3rjd_A 124 FKFFH------------WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKE 167 (262)
T ss_dssp EEEEE------------ECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEEC
T ss_pred ccccC------------CCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEecc
Confidence 75432 23578999999999999999999983 2334555554
No 174
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=124.47 Aligned_cols=124 Identities=15% Similarity=0.233 Sum_probs=89.5
Q ss_pred EEEEcccCCCCCeEEEEEEecCC---ceeeeEEEEEEeccceEecC-cceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP---KISIGYKLNVVISKAKIIGN-SELYIKSGSDINLTCVVLETPDPPSFIYWYRGA 112 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~ 112 (207)
.|.|.++..+|.|.|+|.+.|.. .....+.|.|..+|.+...+ ....+..|+.+.|.|.+.+.|.|. .+.|++++
T Consensus 173 ~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~-~v~W~k~~ 251 (308)
T 4fom_A 173 QYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPF-KSVWSRLD 251 (308)
T ss_dssp EEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEE-EEECCBSS
T ss_pred cceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCc-EEEEEECC
Confidence 69999999999999999998732 24556677777777654443 344566789999999999987662 58999988
Q ss_pred EEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC---CeEEEEEecCCc
Q psy3475 113 NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVLNGKK 170 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~---~~~~~~v~~~~~ 170 (207)
..+..... ......|.|.+++.+|+|.|+|.|.|..+ ....|.|..+|+
T Consensus 252 ~~~~~~~~---------~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 252 GQWPDGLL---------ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp SCCCSSCB---------CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred eECCCcEE---------EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 76643321 12345567888999999999999999843 334555555443
No 175
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.70 E-value=4.2e-16 Score=108.23 Aligned_cols=114 Identities=17% Similarity=0.255 Sum_probs=78.5
Q ss_pred CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-Cce--eeeEEEEEEeccceEecCcceEEecCCcEEEEEEEe
Q psy3475 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKI--SIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVL 97 (207)
Q Consensus 21 ~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 97 (207)
.++|+.+..++ +|.|.+++.+|+|.|+|.+.+. +.. ...+.|.|..+.. .+... ..+..+.|.|.+.
T Consensus 56 ~~~R~~~~~ng-----sL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~----~P~i~-~~~~~v~L~C~~~ 125 (182)
T 1hnf_A 56 EKDTYKLFKNG-----TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVS----KPKIS-WTCINTTLTCEVM 125 (182)
T ss_dssp SCTTEEECTTS-----CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCC----CCEEE-EETTTTEEEEECS
T ss_pred CCCeEEECCCC-----CEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCC----CCEEE-EccCcEEEEeEcc
Confidence 46788876433 7999999999999999999874 332 3456677765321 11111 1344789999999
Q ss_pred eCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCeE
Q psy3475 98 ETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASV 161 (207)
Q Consensus 98 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~~ 161 (207)
+.|.+ .+.|++++..+. ... ..+.+.. ..+|.|.|+|.|.|..+...
T Consensus 126 ~~p~~--~~~W~~~g~~l~-~~~-------------~~i~~~~-~~~d~G~Y~C~a~N~~~~~~ 172 (182)
T 1hnf_A 126 NGTDP--ELNLYQDGKHLK-LSQ-------------RVITHKW-TTSLSAKFKCTAGNKVSKES 172 (182)
T ss_dssp SCSSC--EEEEEESSCEEE-EES-------------SCEEEEC-CSCEEEEEEEEEECSSCEEE
T ss_pred CCCCC--EEEEEECCEECC-CCC-------------cEEEEec-ccCCCcEEEEEEEeCCCCcE
Confidence 88766 899999998872 111 1233322 46899999999999955433
No 176
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.70 E-value=9.3e-17 Score=114.78 Aligned_cols=110 Identities=18% Similarity=0.214 Sum_probs=80.8
Q ss_pred EEEEcccCCCCCeEEEEEEecCCc---eeeeEEEEEEec--cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPK---ISIGYKLNVVIS--KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
.|.|.+++.+|+|.|+|.+.+... .+..+.|.|... ++.+.......+..|+.++|.|...+.+.+ .+.|+++
T Consensus 65 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~--~~~W~k~ 142 (218)
T 1uct_A 65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFD--RFSLAKE 142 (218)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCCS--EEEEEET
T ss_pred EEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCCC--EEEEEEC
Confidence 799999999999999999987432 345567777652 222222334567899999999976665555 8999999
Q ss_pred CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|..+.... . . ......|.|.+++.+|+|.|+|.+.|.
T Consensus 143 g~~~~~~~----~-~---~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 179 (218)
T 1uct_A 143 GELSLPQH----Q-S---GEHPANFSLGPVDLNVSGIYRCYGWYN 179 (218)
T ss_dssp TCSSCCSE----E-E---CSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred CCcccccc----c-C---CCccCEEEEccCCcccCEEEEEEEEcC
Confidence 87654310 0 0 124578999999999999999999875
No 177
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.70 E-value=1.6e-16 Score=120.22 Aligned_cols=111 Identities=25% Similarity=0.309 Sum_probs=80.4
Q ss_pred EEEEcccCCCCCe-EEEEEEecCC-ceeeeEEEEEE-eccceEecCcceEEecCCcEEEEEEEeeCC-CCCcEEEEEeCC
Q psy3475 37 TLKIASSQLRDSG-TYECQVSTEP-KISIGYKLNVV-ISKAKIIGNSELYIKSGSDINLTCVVLETP-DPPSFIYWYRGA 112 (207)
Q Consensus 37 ~L~i~~~~~~d~G-~Y~C~~~~~~-~~~~~~~l~v~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~~~W~~~~ 112 (207)
+|.|.+++.+|+| .|+|.+.+.. .......+.+. .+|..........+..|+.+.|.|.+.+.| .+ .+.|++++
T Consensus 90 ~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~--~i~W~k~~ 167 (329)
T 3oq3_B 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYN--NITWYKNN 167 (329)
T ss_dssp EEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCC--EEEEEETT
T ss_pred eEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCc--eEEEEECC
Confidence 8999999999999 9999999843 33333222333 344433333333456799999999999987 66 89999999
Q ss_pred EEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 113 NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
..+..... ++.. ....|.|.+++.+|+|.|+|.+.|.
T Consensus 168 ~~l~~~~~-~~~~------~~~~L~I~~v~~~D~G~Y~C~a~n~ 204 (329)
T 3oq3_B 168 QELIIDGT-KYSQ------SGQNLIIHNPELEDSGRYDCYVHYD 204 (329)
T ss_dssp EECCCSSS-SEEE------ETTEEEECSCCGGGCEEEEEEEEEC
T ss_pred ccCCCCCc-eEec------CCCEEEEeecChhhCEEEEEEEEec
Confidence 98753322 2221 1358999999999999999999985
No 178
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.70 E-value=1.2e-15 Score=106.95 Aligned_cols=114 Identities=19% Similarity=0.380 Sum_probs=77.6
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc-eeeeEEEEEEeccce--EecCcceEEecCC-cEEEEEEEee
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNVVISKAK--IIGNSELYIKSGS-DINLTCVVLE 98 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~--~~~~~~~~~~~g~-~~~l~C~~~~ 98 (207)
+|+.+.. +++|.|.+++.+|+|.|+|.+.+... ....+.|.|..++.. +.... .....|. .+.|.|.+.+
T Consensus 62 ~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~-~~~~~g~~~v~L~C~~~g 135 (193)
T 2if7_A 62 KRLNFTQ-----SYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS-QLFQNMTCELHLTCSVED 135 (193)
T ss_dssp TTEEECT-----TCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECC-C---CSSEEEEEEEEEES
T ss_pred ccEEECC-----CeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCc-eeecCCCceEEEEEEEec
Confidence 4666542 34899999999999999999987433 445677888765422 11111 1223455 7999999998
Q ss_pred CC-CCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccC-CCeEEEEEeecCCCC
Q psy3475 99 TP-DPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS-DSGNYTCAPSSSDGA 159 (207)
Q Consensus 99 ~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~g~Y~C~~~n~~~~ 159 (207)
.+ .+ .+.|++++..+.. ...|.|.....+ |.|.|+|.|.|..+.
T Consensus 136 ~~p~p--~i~W~~~g~~l~~---------------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~ 181 (193)
T 2if7_A 136 ADDNV--SFRWEALGNTLSS---------------QPNLTVSWDPRISSEQDYTCIAENAVSN 181 (193)
T ss_dssp CCTTC--EEEEEETTEEEES---------------SSEEEEEECTTTCSCCEEEEEEEETTEE
T ss_pred CCCce--EEEEEeCCEEcCC---------------CCeEEEEeccCcCCCCcEEEEEECCCCc
Confidence 54 55 8999999886532 124666554554 899999999998443
No 179
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.70 E-value=6.3e-17 Score=118.10 Aligned_cols=153 Identities=15% Similarity=0.196 Sum_probs=94.1
Q ss_pred CeeEEccCCccceeeEEEEeC--------CC-eEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-------ceeee
Q psy3475 1 VSWIRKRDLHILTVGILTYTN--------DL-RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-------KISIG 64 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~--------~~-r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-------~~~~~ 64 (207)
|.|||+..+..+......... .+ ||.+..+... . |.|.+++.+|+|.|+|.+.+.. .....
T Consensus 33 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~-L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~ 109 (253)
T 3to4_D 33 MSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT--E-LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEG 109 (253)
T ss_dssp EEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSS--C-CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCC
T ss_pred EEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCC--e-EEEccCChhhCeEEEEEEecCCCCcccceEECCC
Confidence 589998776554433322111 12 8887654432 2 9999999999999999997531 12344
Q ss_pred EEEEEEe------ccceEe-cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEE------Eec-c
Q psy3475 65 YKLNVVI------SKAKII-GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV------TEK-Q 130 (207)
Q Consensus 65 ~~l~v~~------~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~------~~~-~ 130 (207)
..|.|.. +|.... .+....+..|+.+.|.|.+.+.+++...+.|+++|..+........... .++ .
T Consensus 110 t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~ 189 (253)
T 3to4_D 110 SKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRY 189 (253)
T ss_dssp EEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTCTTCCE
T ss_pred EEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEECCCceecccccccccccCCCCCE
Confidence 5677753 222221 1222223356899999999996544458999999988754211000000 000 1
Q ss_pred cceEEEEEEecccCC-CeEEEEEeecC
Q psy3475 131 TRTSRLVISKAVTSD-SGNYTCAPSSS 156 (207)
Q Consensus 131 ~~~~~l~i~~~~~~d-~g~Y~C~~~n~ 156 (207)
...+.|.|.....+| .|.|+|.|.+.
T Consensus 190 ~~~s~l~i~~~~~~d~~~~ytC~v~h~ 216 (253)
T 3to4_D 190 ALSSRLRVSATFWQNPRNHFRCQVQFY 216 (253)
T ss_dssp EEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred EEEEEEEECHHHhccCCCEEEEEEEeC
Confidence 123568888777777 77999999997
No 180
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=99.70 E-value=4.1e-16 Score=124.86 Aligned_cols=153 Identities=20% Similarity=0.308 Sum_probs=102.7
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCe-EEEEEEecCCc--eeeeEEEEEE----ecc
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSG-TYECQVSTEPK--ISIGYKLNVV----ISK 73 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~--~~~~~~l~v~----~~~ 73 (207)
|.|||.++... ..+.++.+..+. .|.|.+++.+|+| .|+|.+.+... .+..+.|.|. .+|
T Consensus 146 v~W~~~~g~~l--------~~~~~~~~~~~~-----~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p 212 (524)
T 2ec8_A 146 YSLKGCQGKPL--------PKDLRFIPDPKA-----GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVP 212 (524)
T ss_dssp EEEECSSSCCC--------CSSCEEEEETTT-----EEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCC
T ss_pred EEEEccCCcCc--------CCCCceeECCCc-----cEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCC
Confidence 47888543222 124555544333 7999999999999 99999987433 2446788886 556
Q ss_pred ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEE--EecCCCceEEEEe-cccceEEEEEEecccCCCeEEE
Q psy3475 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV--NYSQRGGISVVTE-KQTRTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~ 150 (207)
.+...+....+..|+.+.|.|.+.+.|.+. .+.|++++..+ ..... .....+ .......|.|.++..+|+|.|+
T Consensus 213 ~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~-~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 289 (524)
T 2ec8_A 213 VVSVSKASYLLREGEEFTVTCTIKDVSSSV-YSTWKRENSQTKLQEKYN--SWHHGDFNYERQATLTISSARVNDSGVFM 289 (524)
T ss_dssp EEECSCSEEEEETTSCEEEEEEEEESSTTC-EEEEEETTCSCCCCEEEE--EEECSSSCEEEEEEEEESSCCTTTCEEEE
T ss_pred cEEecCCcceEEcCCcEEEEEEEecCCCcE-EEEEEeCCCCCccccccc--cccccCCccceEEEEEECCCCHHHCEEEE
Confidence 665667777888999999999999987662 49999988762 22111 111100 0123578999999999999999
Q ss_pred EEeecCCCC---eEEEEEecCC
Q psy3475 151 CAPSSSDGA---SVVVHVLNGK 169 (207)
Q Consensus 151 C~~~n~~~~---~~~~~v~~~~ 169 (207)
|.+.|..+. ...+.|...+
T Consensus 290 C~a~n~~g~~~~~~~l~V~~~p 311 (524)
T 2ec8_A 290 CYANNTFGSANVTTTLEVVDKG 311 (524)
T ss_dssp EEEECSSCEEEEEEEEEEESSC
T ss_pred EEEEecCCceEEEEEEEEeccC
Confidence 999998333 4455555433
No 181
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.70 E-value=4.2e-16 Score=115.64 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=90.8
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCC-CCcEEEEE-eCCE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPD-PPSFIYWY-RGAN 113 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~~W~-~~~~ 113 (207)
..|.|.+++.+|+|.|+|.+.+ + ....+.|.|..++.....+....+..|+.+.|.|.+.+ |. + .+.|+ +++.
T Consensus 57 ~~L~i~~~~~~d~G~Y~C~~~n-g-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~--~v~W~~~~g~ 131 (290)
T 2o26_X 57 NEWIQEKAEATRTGTYTCSNSN-G-LTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVS--QYSLIECDGK 131 (290)
T ss_dssp SEEEETTCCGGGCEEEEEEESS-S-CEEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCE--EEEEEETTSC
T ss_pred ceEEEeccCHHhCeEEEEEeeC-C-ccEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCc--eEEEEeCCCc
Confidence 3899999999999999999988 3 37778888888776555566777889999999999985 55 4 89995 5776
Q ss_pred EEEecCCCceEEEEecccceEEEEEEecccCCCe-EEEEEeecCC----CCeEEEEEe
Q psy3475 114 VVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSG-NYTCAPSSSD----GASVVVHVL 166 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~n~~----~~~~~~~v~ 166 (207)
.+.... ++... ....|.|.++..+|.| .|+|.+.|.. +....+.|.
T Consensus 132 ~l~~~~--~~~~~-----~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~ 182 (290)
T 2o26_X 132 SLPTDL--TFVPN-----PKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR 182 (290)
T ss_dssp CCCTTC--EEEEE-----TTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEE
T ss_pred CCCCCC--ceeeC-----CCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEE
Confidence 664322 12211 2247999999999999 9999999972 234566665
No 182
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.69 E-value=2.9e-16 Score=108.91 Aligned_cols=110 Identities=21% Similarity=0.239 Sum_probs=76.5
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCC
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDP 102 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~ 102 (207)
+|+.+.. .+++|.|.+++.+|+|.|+|.+.+.......+.|.|..++.. +... ..+..+.|.|.+...|.|
T Consensus 60 ~R~~l~~----~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~L~V~~~~~~----P~i~-~~~~~v~L~C~~~~gp~p 130 (180)
T 2dru_A 60 DRVDLDK----TNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSK----PMIY-WECSNATLTCEVLEGTDV 130 (180)
T ss_dssp TTEEECT----TTCCEEECSCCGGGCEEEEEEEESSSEEEEEEEEEEECCCCC----CEEE-EEGGGTEEEEECSSCTTC
T ss_pred CeEEEeC----CCccEEEcCCCHHHCeEEEEEEEcCCeEEEEEEEEEECCCCC----CEEE-ecCCCEEEEEEeCCCCCC
Confidence 6776522 234899999999999999999976444456667777664311 1111 245679999999444666
Q ss_pred CcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 103 PSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 103 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
.+.|++++..+... ....|.+.. .+|.|.|+|.|.|..+
T Consensus 131 --~i~W~~~~~~l~~~-------------~~~~l~~~~--~~d~g~Y~C~a~N~~~ 169 (180)
T 2dru_A 131 --ELKLYQGKEHLRSL-------------RQKTMSYQW--TNLRAPFKCKAVNRVS 169 (180)
T ss_dssp --EEEEEETTEEEEEE-------------SSSEEEEEC--SCCSSCEEEEEEETTE
T ss_pred --EEEEEECCeECcCC-------------CCCEEEEEE--hhcCccEEEEEecCcC
Confidence 89999999887521 122444432 7899999999999844
No 183
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.69 E-value=2.4e-15 Score=105.93 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=78.4
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCC------ceeeeEEEEEEec---cceEecCcceEEecCCcEEEEEEEeeCCCCCcE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEP------KISIGYKLNVVIS---KAKIIGNSELYIKSGSDINLTCVVLETPDPPSF 105 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~------~~~~~~~l~v~~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~ 105 (207)
...|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|... |.+...+. ..+..|+.++|.|.+.+ +.+ .
T Consensus 62 ~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~--~ 137 (201)
T 1nkr_A 62 KANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYD--M 137 (201)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCS--E
T ss_pred eEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCc--e
Confidence 3489999999999999999997521 2345667777753 33333333 46789999999999876 344 7
Q ss_pred EEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 106 IYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 106 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.|+++|..+...... . ..........|.|.+++ |+|.|+|.+.+.
T Consensus 138 ~~w~k~g~~~~~~~~~-~--~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 138 YHLSREGEAHERRLPA-G--PKVNGTFQADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp EEEEETTCSSCEEEEC-E--EEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred EEEEECCcccCccccc-c--cccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence 8999988765432110 0 00001125689999998 999999999865
No 184
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.69 E-value=5.1e-16 Score=114.96 Aligned_cols=125 Identities=19% Similarity=0.236 Sum_probs=90.4
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccc-eEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe-C
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKA-KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR-G 111 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~-~ 111 (207)
..+|.|.+++.+|+|.|+|.+.+. +.....+.|.|..++. ....+....+..|+.+.|.|.+.+.+.+. .+.|++ +
T Consensus 50 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~-~v~W~~~~ 128 (289)
T 3ejj_X 50 GSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKD-SVSLMREG 128 (289)
T ss_dssp CCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGG-SEEEEEGG
T ss_pred ccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcce-EEEEEecC
Confidence 358999999999999999998863 3456777888877665 34556677888999999999999865441 489986 6
Q ss_pred CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeec-C---CCCeEEEEEec
Q psy3475 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS-S---DGASVVVHVLN 167 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n-~---~~~~~~~~v~~ 167 (207)
+..+..... +... ....|.|.++..+|.|.|+|.+.| . ......+.|..
T Consensus 129 ~~~~~~~~~--~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~ 181 (289)
T 3ejj_X 129 GRQVLRKTV--YFFS-----PWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNR 181 (289)
T ss_dssp GEECCTTCC--EEEE-----TTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEES
T ss_pred CeecCCCcc--EEEC-----CCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEE
Confidence 665543322 2221 234699999999999999999984 3 34556777763
No 185
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.69 E-value=6.7e-17 Score=114.53 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=77.0
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCc---eeeeEEE--EEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPK---ISIGYKL--NVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR 110 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l--~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~ 110 (207)
..|.|.+++.+|+|.|+|.+.+... ....+.+ .+..+|.+...+.......|+.+.|.|.+.+.+++...+.|++
T Consensus 68 ~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k 147 (207)
T 2vol_A 68 SELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWES 147 (207)
T ss_dssp EEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEE
Confidence 3799999999999999999987432 1223322 3344554433333222235899999999999654444899999
Q ss_pred CCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 111 GANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+|..+............++ ....+.|.+.....+|.|.|+|.|.|.
T Consensus 148 ~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~ 194 (207)
T 2vol_A 148 NGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE 194 (207)
T ss_dssp TTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECT
T ss_pred CCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECC
Confidence 9987643211111111111 112245667666677899999999998
No 186
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.68 E-value=1.3e-15 Score=117.57 Aligned_cols=121 Identities=22% Similarity=0.371 Sum_probs=83.2
Q ss_pred EEEEcccCCCCCeEEEEEEecCCc-e---eeeEEEEEE-------eccc-eEecCcceEEecCCcEEEEEEEeeCCCCCc
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPK-I---SIGYKLNVV-------ISKA-KIIGNSELYIKSGSDINLTCVVLETPDPPS 104 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~-~---~~~~~l~v~-------~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 104 (207)
.|.|.+++.+|+|.|+|.+.|... . .....+.+. .+|. ....+....+..|+.+.|.|.+.+.|.|
T Consensus 158 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p-- 235 (384)
T 3kld_A 158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP-- 235 (384)
T ss_dssp CEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCC--
T ss_pred cEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCC--
Confidence 799999999999999999987422 1 112223322 1222 2233556677899999999999999888
Q ss_pred EEEEEeC-CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC---eEEEEEec
Q psy3475 105 FIYWYRG-ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA---SVVVHVLN 167 (207)
Q Consensus 105 ~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~---~~~~~v~~ 167 (207)
.+.|+++ +..+..... . ......|.|.+++.+|+|.|+|.|.|..+. ...+.+..
T Consensus 236 ~i~W~k~~~~~~~~~~~----~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~ 294 (384)
T 3kld_A 236 TILWRRADGKPIARKAR----R----HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA 294 (384)
T ss_dssp EEEEEETTCCCCCTTCE----E----CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred cEEEEeCCCccccccce----e----cCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec
Confidence 8999984 444432111 0 123457999999999999999999998443 33444443
No 187
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.68 E-value=4.7e-17 Score=127.55 Aligned_cols=157 Identities=16% Similarity=0.162 Sum_probs=98.5
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v 69 (207)
|.|||+..+..+....+.+. .++|+.+..+...+.++|.|.+++.+|+|.|+|.+.+.. .......|.|
T Consensus 33 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V 112 (434)
T 1igy_B 33 IHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTV 112 (434)
T ss_dssp CEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEE
T ss_pred EEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCChHHCEEEEEEEEccccccCCceEEEE
Confidence 68999865443332222211 246888765543456789999999999999999998732 2345567777
Q ss_pred Ee----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCC
Q psy3475 70 VI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 70 ~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.. +|.+...+....+..|+.+.|.|.+.+.++....+.|++++..+......... ........+.|.|..+..+|
T Consensus 113 ~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d 191 (434)
T 1igy_B 113 SSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVPSSPRPS 191 (434)
T ss_dssp CCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEE-CSSCEEEEEEEEEETTTTTS
T ss_pred ccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCcee-cCCcEEEEEEEEEcchhcCC
Confidence 53 23333223223346899999999999873222389999987642110000000 00001123578998888888
Q ss_pred CeEEEEEeecCCCC
Q psy3475 146 SGNYTCAPSSSDGA 159 (207)
Q Consensus 146 ~g~Y~C~~~n~~~~ 159 (207)
|.|+|.|.|..+.
T Consensus 192 -g~Y~C~a~n~~~~ 204 (434)
T 1igy_B 192 -ETVTCNVAHPASS 204 (434)
T ss_dssp -SCCEEEEECTTTT
T ss_pred -CcEEEEEEeCCCC
Confidence 9999999998443
No 188
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.68 E-value=7.7e-16 Score=109.48 Aligned_cols=119 Identities=20% Similarity=0.216 Sum_probs=78.2
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEe
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYR 110 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~ 110 (207)
++++|.|.+++.+|+|.|+|.+.+... ......+.+..++.....+.......++.+.+.|.+.+. |.+ .+.|.+
T Consensus 81 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~--~~~w~~ 158 (225)
T 4fmk_A 81 RDATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPA--RITWIS 158 (225)
T ss_dssp CBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCC--EEEEEC
T ss_pred CcEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCC--EEEEEE
Confidence 466899999999999999999987432 333445555555555444444555567777777766554 444 788988
Q ss_pred CCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 111 GANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
++..+..... .....++ ....+.|.|.++..+|.|.|+|.|.|.
T Consensus 159 ~~~~~~~~~~--~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~ 203 (225)
T 4fmk_A 159 SLGGEAKDTQ--EPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHE 203 (225)
T ss_dssp SSCCEEEEEE--EECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECT
T ss_pred CCccccCCcc--eEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcC
Confidence 7654332111 0000000 112357999999999999999999997
No 189
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.67 E-value=4.7e-17 Score=123.06 Aligned_cols=123 Identities=24% Similarity=0.430 Sum_probs=87.6
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEecc----ceEe-cCcceEEecCCcEEEEEEEeeCCCCCcEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISK----AKII-GNSELYIKSGSDINLTCVVLETPDPPSFIYW 108 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~----~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W 108 (207)
..+|.|.+++.+|+|.|+|.+.+. +.....+.|.|...+ .+.. .+....+..|+.+.|.|.+.+.|.+ .+.|
T Consensus 179 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p--~v~W 256 (334)
T 1ry7_B 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP--HIQW 256 (334)
T ss_dssp TTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCE--EEEE
T ss_pred eEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCC--eEEE
Confidence 458999999999999999999984 345667778887532 2211 2456678899999999999998777 8999
Q ss_pred Ee----CCEEEEecCCCceEEEEec-----ccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 109 YR----GANVVNYSQRGGISVVTEK-----QTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 109 ~~----~~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
++ +|..+.............. ......|.|.++..+|+|.|+|.|.|..+.
T Consensus 257 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 316 (334)
T 1ry7_B 257 LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGF 316 (334)
T ss_dssp EECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCC
T ss_pred EECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCe
Confidence 99 5655543322111111100 112247999999999999999999998443
No 190
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.67 E-value=4.5e-16 Score=117.49 Aligned_cols=123 Identities=15% Similarity=0.223 Sum_probs=75.8
Q ss_pred EEEEcccCCCCCeEEEEEEecCCc----eeeeEEE--EEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPK----ISIGYKL--NVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR 110 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l--~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~ 110 (207)
.|.|.....+|.|.|+|.+.|... ......+ .+..+|.+...+.. +..|+.+.|.|.+.+.+++...+.|++
T Consensus 181 ~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k 258 (327)
T 2wng_A 181 TAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLE 258 (327)
T ss_dssp EEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEE
T ss_pred EEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEE
Confidence 688887777889999999997422 2233333 23445544333322 568999999999999765544799999
Q ss_pred CCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecCCCCeE
Q psy3475 111 GANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSSDGASV 161 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~~ 161 (207)
+|..+.......+....++ ....+.|.|..+..+|.|.|+|.|.|..+..+
T Consensus 259 ~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~ 310 (327)
T 2wng_A 259 NGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAV 310 (327)
T ss_dssp TTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCE
T ss_pred CCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCc
Confidence 9998865432221111111 11125688889999999999999999855443
No 191
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.67 E-value=5.1e-15 Score=118.44 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=95.8
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc-----------
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK----------- 60 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----------- 60 (207)
|+|||+.++..+....+.+. ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.+...
T Consensus 36 v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~ 115 (512)
T 1zvo_C 36 WGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDG 115 (512)
T ss_pred EEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccc
Confidence 58999987655544433322 1478988776656678999999999999999999986421
Q ss_pred ---eeeeEEEEEEec----cceE-ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec-cc
Q psy3475 61 ---ISIGYKLNVVIS----KAKI-IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK-QT 131 (207)
Q Consensus 61 ---~~~~~~l~v~~~----~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~ 131 (207)
......|.|... |.+. ..+.......|+.+.|.|.+.+..+....+.|++++........... ...++ ..
T Consensus 116 ~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~-~~~~g~~~ 194 (512)
T 1zvo_C 116 IDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEI-QRRDSYYM 194 (512)
T ss_pred cccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCce-ecCCCCEE
Confidence 234557777632 2221 11211101246889999999997332237999986543110000000 00000 11
Q ss_pred ceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 132 RTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 132 ~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
..+.|.|.....+ .|.|+|.|.|..
T Consensus 195 ~~s~L~i~~~~~~-~g~ytC~v~n~~ 219 (512)
T 1zvo_C 195 TSSQLSTPLQQWR-QGEYKCVVQHTA 219 (512)
T ss_pred EEEEEEEcHHHcC-CceEEEEEEeCC
Confidence 2356888877776 899999999983
No 192
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.67 E-value=2e-15 Score=110.08 Aligned_cols=110 Identities=23% Similarity=0.365 Sum_probs=84.4
Q ss_pred EEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEec--cceEecCcceEEecCCcEEEEEEEeeCCC-CCc--EEEEEe
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVIS--KAKIIGNSELYIKSGSDINLTCVVLETPD-PPS--FIYWYR 110 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~--~~~W~~ 110 (207)
.|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+ ++.+.......+..|+.+.|.|.+.+.|. +.. .+.|++
T Consensus 132 ~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~ 211 (262)
T 3rjd_A 132 NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYM 211 (262)
T ss_dssp CEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEE
T ss_pred eEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEe
Confidence 79999999999999999998744 3566678888753 33333344566788999999999999875 422 368899
Q ss_pred CCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 111 GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
++..+.... ....|.|.++..+|+|.|+|.|.|..+
T Consensus 212 ~~~~~~~~~------------~~~~L~i~~v~~~d~G~Y~C~a~n~~G 247 (262)
T 3rjd_A 212 GSKTLRGRN------------TSSEYQILTARREDSGLYWCEAATEDG 247 (262)
T ss_dssp TTEEEEEEE------------SCCEEEESSCCGGGCEEEEEEEEETTS
T ss_pred CCcEecccC------------CCceEEEEEechhhCeEEEEEEEcccC
Confidence 998776432 245799999999999999999999844
No 193
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.66 E-value=1.8e-15 Score=104.10 Aligned_cols=101 Identities=21% Similarity=0.292 Sum_probs=71.7
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV 115 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~ 115 (207)
++|.|.+++.+|+|.|+|.+.+... ...+.|.|..++.. +..... +....|.|.+.+.|.| .+.|++++..+
T Consensus 60 ~sL~I~~v~~~DsG~Y~C~~~n~~~-~~~~~L~V~~~~~~----p~i~~~-~~~~~L~C~~~~~p~p--~i~W~~~~~~l 131 (171)
T 1ccz_A 60 GSLTIYNLTSSDEDEYEMESPNITD-TMKFFLYVLEMVSK----PMIYWE-CSNATLTCEVLEGTDV--ELKLYQGKEHL 131 (171)
T ss_dssp CCEEECSCCGGGCEEEEEECTTCCS-CEEEEEEEECCCCC----CEEEEE-TTTTEEEEECSSCSSC--EEEEEETTEEE
T ss_pred CeEEECCCChhhCceEEEEEeCCCC-cEEEEEEEECcCCC----CEEEEe-cCCcEEEEEeCCCCCc--EEEEEECCEEC
Confidence 4899999999999999999987444 66778888765321 111111 1123799999988777 89999999988
Q ss_pred EecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 116 NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
..... ..+.+. ...|.|.|+|.|.|..+.
T Consensus 132 ~~~~~-------------~~l~~~--~~~~~g~Y~C~a~N~~~~ 160 (171)
T 1ccz_A 132 RSLRQ-------------KTMSYQ--WTNLRAPFKCKAVNRVSQ 160 (171)
T ss_dssp EEESS-------------SEEEEE--CSCCSSCEEEEEEETTEE
T ss_pred cCCcc-------------eEEEEe--ccCCCceEEEEEEcccCc
Confidence 64322 123332 367899999999998443
No 194
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=99.66 E-value=6.8e-16 Score=129.64 Aligned_cols=118 Identities=19% Similarity=0.347 Sum_probs=94.2
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA 112 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~ 112 (207)
....|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.| .+.|++++
T Consensus 675 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p--~i~W~k~~ 752 (816)
T 3dmk_A 675 RGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKP--QVTWKKAV 752 (816)
T ss_dssp TEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCC--EEECCEEC
T ss_pred CeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCCCC--eEEEEecC
Confidence 4568999999999999999999984 45677888999999988888888888999999999999999888 89999876
Q ss_pred EEEEec-----CCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 113 NVVNYS-----QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 113 ~~~~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
..+... ...+... ....|.|.+++.+|+|.|+|.|.|..+.
T Consensus 753 ~~~~~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 798 (816)
T 3dmk_A 753 GDTPGEYKDLKKSDNIRV------EEGTLHVDNIQKTNEGYYLCEAINGIGS 798 (816)
T ss_dssp SSSTTCCBCCCCBTTEEE------ETTEEEECSCCGGGCEEEEEEEECSSSS
T ss_pred CCCCccccccccCCCEEe------cCCEEEECcCChhhCeEEEEEEEeCCCC
Confidence 433211 1111111 2347999999999999999999999444
No 195
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.66 E-value=4.2e-16 Score=110.24 Aligned_cols=111 Identities=20% Similarity=0.294 Sum_probs=74.5
Q ss_pred EEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEe--------------------------c----cceEecCcceEEec
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI--------------------------S----KAKIIGNSELYIKS 86 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~--------------------------~----~~~~~~~~~~~~~~ 86 (207)
+|.|.+++.+|+|.|+|.+.+.. ...+.|.+.. . +..+..........
T Consensus 50 ~L~i~~v~~~DsG~Y~C~~~~~~--s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~ 127 (204)
T 1sy6_A 50 KWNLGSNAKDPRGMYQCKGSQNK--SKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127 (204)
T ss_dssp CEEEEEGGGCCEEEEEEESSSSC--CCCEEEEEEC------------------------------------CCCCEEEEE
T ss_pred eEEeCCCCcCCCEEEEEEecCCC--CeeEEEEEEEeccccccccccccccccccccccccccccccccceecCCceeeec
Confidence 79999999999999999975422 2223444430 0 11111112222238
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEec-ccCCCeEEEEEeecCCC
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA-VTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~Y~C~~~n~~~ 158 (207)
|+.+.|.|. +.|.| .+.|++++..+........... ....|.|.++ +.+|+|.|+|.|.|..+
T Consensus 128 G~~v~L~C~--g~p~p--~i~W~k~~~~l~~~~~~~~~~~-----~~~~L~I~~v~~~~D~G~Y~C~A~N~~g 191 (204)
T 1sy6_A 128 GTTVILTCP--QYPGS--EILWQHNDKNIGGDEDDKNIGS-----DEDHLSLKEFSELEQSGYYVCYPRGSKP 191 (204)
T ss_dssp TTEEEEECS--CCCSS--CEEEEETTEEESCCTTCTTEEE-----ETTEEEETTCCHHHHCEEEEEEETTSCG
T ss_pred CCcEEEEcC--CCCCC--ceEEEECCEECCCccCCceEec-----CCCEEEEeeCCccccCEEEEEEeccCCC
Confidence 999999998 66666 7999999998765422221111 2458999999 99999999999999844
No 196
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.66 E-value=1.8e-15 Score=105.56 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=81.4
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCC---ceeeeEEEEEEe---ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEE
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEP---KISIGYKLNVVI---SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIY 107 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~ 107 (207)
....|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|.. +|.+...+ ...+..|+.++|.|.+.+. .+ .+.
T Consensus 55 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~~--~~~ 130 (188)
T 1oll_A 55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TS--MFL 130 (188)
T ss_dssp CEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSSS-CS--EEE
T ss_pred ceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCCC-CC--EEE
Confidence 45689999999999999999997632 234567777764 33333333 4567899999999997653 34 789
Q ss_pred EEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 108 WYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 108 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|++++..+.... . . ......|.|.+++.+|+|.|+|.+.|.
T Consensus 131 w~k~g~~~~~~~----~--~--~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 171 (188)
T 1oll_A 131 LLKEGRSSHVQR----G--Y--GKVQAEFPLGPVTTAHRGTYRCFGSYN 171 (188)
T ss_dssp EEEESSSCEEEE----E--E--CSSEEEEEEEECCGGGCEEEEEECEEE
T ss_pred EEECCccccccc----c--C--CCceeEEEECCCCcCCCcEEEEEEEcC
Confidence 999886554310 0 0 224578999999999999999999875
No 197
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.66 E-value=7e-16 Score=116.92 Aligned_cols=114 Identities=19% Similarity=0.330 Sum_probs=85.9
Q ss_pred EEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEeccceE--ecCcceEEecCCcEEEEEE-----EeeCCCCCcEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKI--IGNSELYIKSGSDINLTCV-----VLETPDPPSFIYW 108 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~--~~~~~~~~~~g~~~~l~C~-----~~~~~~~~~~~~W 108 (207)
+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..++... .......+..|+.+.|.|. +.+.|.+ .+.|
T Consensus 82 ~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~--~v~W 159 (339)
T 3o4o_C 82 ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV--KIQW 159 (339)
T ss_dssp EEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCC--CBCC
T ss_pred eEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCc--eEEE
Confidence 79999999999999999998743 45667788887765422 1123346788999999999 6777777 8999
Q ss_pred EeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 109 YRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
++++..+..... ++... .....|.|.++..+|.|.|+|.+.|..
T Consensus 160 ~k~g~~~~~~~~-~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 203 (339)
T 3o4o_C 160 YKDSLLLDKDNE-KFLSV----RGTTHLLVHDVALEDAGYYRCVLTFAH 203 (339)
T ss_dssp EESSCBCCTTCS-SEEEC----TTSSEEEESSCCGGGCEEEEEEEECCB
T ss_pred ecCCeeCCCCCc-eeEEc----CCcceEEEcccCHhhCeEEEEEEEECC
Confidence 999887754322 22211 123489999999999999999999973
No 198
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.66 E-value=1.7e-15 Score=115.92 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=78.5
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC---CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE---PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
..+|.|.+++.+|+|.|+|.+.|. +.....+.|.|.. ..|+.+.|.|.+.+.|.|...+.|+++
T Consensus 254 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~-------------v~g~~~~l~C~~~g~p~p~~~i~W~~~ 320 (363)
T 1wio_A 254 PLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR-------------ATQLQKNLTCEVWGPTSPKLMLSLKLE 320 (363)
T ss_dssp SCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE-------------ECCCSSSEEEEEESSCCTTCCEEEECS
T ss_pred ceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE-------------ecCCCeeEEEEEccccCCCccEEEEeC
Confidence 558999999999999999999986 4456677777752 128889999999998888445999999
Q ss_pred CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCeE
Q psy3475 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASV 161 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~~ 161 (207)
+..+.. ...|.|..+..+|+|.|+|.|.|......
T Consensus 321 ~~~~~~---------------~~~l~i~~v~~~d~G~Y~C~a~~~~~~~~ 355 (363)
T 1wio_A 321 NKEAKV---------------SKREKAVWVLNPEAGMWQCLLSDSGQVLL 355 (363)
T ss_dssp SSSCSE---------------EESSSEEEESSCCSEEEEEEECSSSSCCE
T ss_pred CCceee---------------eeeeeeeeeccccceeEEEEEecCCeEEE
Confidence 876542 23467789999999999999998744433
No 199
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.66 E-value=3.1e-16 Score=112.02 Aligned_cols=121 Identities=14% Similarity=0.167 Sum_probs=74.4
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCc-e--eeeEEE--EEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPK-I--SIGYKL--NVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR 110 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~-~--~~~~~l--~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~ 110 (207)
.+|.|.+++.+|+|.|+|.+.+... . ...+.+ .+..+|.+...+.......|+.+.|.|.+.+.+++...+.|++
T Consensus 76 ~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k 155 (218)
T 2rgs_A 76 STLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTS 155 (218)
T ss_dssp EEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEE
Confidence 3799999999999999999987432 1 222211 3334454433332222235899999999999533334899999
Q ss_pred CCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 111 GANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+|..+............++ ....+.|.+.....+|.|.|+|.|.|.
T Consensus 156 ~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~ 202 (218)
T 2rgs_A 156 NGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHE 202 (218)
T ss_dssp TTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECT
T ss_pred CCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcC
Confidence 9987643211111101010 111234566555556799999999998
No 200
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.65 E-value=6.3e-16 Score=113.76 Aligned_cols=154 Identities=14% Similarity=0.184 Sum_probs=94.8
Q ss_pred CeeEEccCCccceeeEEEEeC----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec-------CC----
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST-------EP---- 59 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-------~~---- 59 (207)
|.|||+.++..+....+.+.. .+||.+..+...+.++|.|.+++.+|+|.|.|.+.+ .+
T Consensus 57 v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~ 136 (267)
T 3u1s_H 57 VHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLTADDTAIYYCLTGSKHRLRDYFLYNEY 136 (267)
T ss_dssp EEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCCGGGCEEEEEEEEEEEEEEEEEECCTT
T ss_pred EEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCChhhCEEEEEEECcCCccccccccccc
Confidence 589999877666555443321 478998777766789999999999999999999861 10
Q ss_pred ---------------ceeeeEEEEEEe----ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCC
Q psy3475 60 ---------------KISIGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR 120 (207)
Q Consensus 60 ---------------~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~ 120 (207)
.......|.|.. +|.+...+.......|+.+.|.|.+.+..+....+.| ++..+.....
T Consensus 137 ~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~ 214 (267)
T 3u1s_H 137 GPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVH 214 (267)
T ss_dssp SSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEE
T ss_pred ccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEEEEEeEEECCCeEEEE--CCcccCCCEE
Confidence 011234566642 2222211222223578999999999986543448999 4432211000
Q ss_pred C-ceEEEEec-ccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 121 G-GISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 121 ~-~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
. ......++ ....+.|.|.....+| +.|+|.+.+..
T Consensus 215 ~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~ 252 (267)
T 3u1s_H 215 TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 252 (267)
T ss_dssp ECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGG
T ss_pred eCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECC
Confidence 0 00000000 1123578888888888 99999999973
No 201
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.65 E-value=3.7e-15 Score=109.01 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=85.1
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecC--C----ceeeeEEEEEEec---cceEecCcceEEecCCcEEEEEEEeeCCCCCc
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTE--P----KISIGYKLNVVIS---KAKIIGNSELYIKSGSDINLTCVVLETPDPPS 104 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~--~----~~~~~~~l~v~~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 104 (207)
....|.|.+++.+|+|.|+|.+.+. . ..+..+.|.|... |.+...+ ...+..|+.++|.|.+.+. .+
T Consensus 60 ~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p-~~~V~~G~~vtL~C~~~~~-~~-- 135 (257)
T 1b6u_A 60 SKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQP-GPTVLAGESVTLSCSSRSS-YD-- 135 (257)
T ss_dssp EEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSS-CTTCBTTCEEEEEEECSSC-CS--
T ss_pred ceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccC-CCccCCCCEEEEEEeCCCC-Cc--
Confidence 3458999999999999999999742 1 2355677888753 2222223 2356799999999998764 33
Q ss_pred EEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC--------CCCeEEEEEecCC
Q psy3475 105 FIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS--------DGASVVVHVLNGK 169 (207)
Q Consensus 105 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~--------~~~~~~~~v~~~~ 169 (207)
.+.|+++|..+....... ..........|.|.+++ |+|.|+|.+.+. .+..+.+.|...+
T Consensus 136 ~~~w~k~g~~~~~~~~~~---~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p 203 (257)
T 1b6u_A 136 MYHLSREGEAHERRFSAG---PKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNP 203 (257)
T ss_dssp EEEEEETTSSCEECCBCB---CCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC
T ss_pred EEEEEECCcccCcccccc---cccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccC
Confidence 789999987665432110 00001135689999998 999999999864 2334556555543
No 202
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.65 E-value=9.5e-17 Score=121.40 Aligned_cols=127 Identities=21% Similarity=0.368 Sum_probs=60.0
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccc----------------------eEec----CcceEEecCCc
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA----------------------KIIG----NSELYIKSGSD 89 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~----------------------~~~~----~~~~~~~~g~~ 89 (207)
.+|.|.+++.+|+|.|+|.+.+.+.....+.|.|..++. +... .....+..|+.
T Consensus 61 ~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~ 140 (334)
T 1ry7_B 61 QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANT 140 (334)
T ss_dssp ----------------------------------------------------------CCCCSCCTTCCCCEEEEETTCC
T ss_pred ceEEEeecccccCEEEEEEEEeCCeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCc
Confidence 379999999999999999998764445556666654321 1111 12356778999
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC---CCeEEEEEe
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD---GASVVVHVL 166 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~---~~~~~~~v~ 166 (207)
+.|.|.+.+.|.+ .+.|++++..+......... .. ......|.|.++..+|+|.|+|.+.|.. .....+.|.
T Consensus 141 v~l~C~~~g~p~~--~v~W~~~~~~~~~~~~~~~~-~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 215 (334)
T 1ry7_B 141 VRFRCPAAGNPTP--SISWLKNGREFRGEHRIGGI-KL--RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 215 (334)
T ss_dssp EEEECCCCCSSCC--EEECCBTTBCCCTTSSTTCC-CC--CTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEccCCCCC--eEEEEECCEECcccccccce-ec--ccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEe
Confidence 9999999988777 89999998877544321100 00 1234579999999999999999999983 233455555
Q ss_pred c
Q psy3475 167 N 167 (207)
Q Consensus 167 ~ 167 (207)
.
T Consensus 216 ~ 216 (334)
T 1ry7_B 216 E 216 (334)
T ss_dssp C
T ss_pred c
Confidence 4
No 203
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.65 E-value=4.2e-16 Score=118.58 Aligned_cols=122 Identities=20% Similarity=0.323 Sum_probs=60.9
Q ss_pred EEEEcccCCCCCeEEEEEEecC--Cce---eeeEEEEEEec------cceEecCcce--EEecCCcEEEEEEEee----C
Q psy3475 37 TLKIASSQLRDSGTYECQVSTE--PKI---SIGYKLNVVIS------KAKIIGNSEL--YIKSGSDINLTCVVLE----T 99 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~--~~~---~~~~~l~v~~~------~~~~~~~~~~--~~~~g~~~~l~C~~~~----~ 99 (207)
.|.|.+++.+|+|.|+|.+.+. +.. ...+.|.|..+ |.+...+... .+..|+.+.|.|.+.+ .
T Consensus 178 ~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~ 257 (349)
T 4dep_C 178 NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMD 257 (349)
T ss_dssp EEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTT
T ss_pred EEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCC
Confidence 7999999999999999999873 332 45666667653 3332222222 6778999999999995 4
Q ss_pred CCCCcEEEEEeCCEEEEe-cCCCceEEEEe-----cccceEEEEEEecccCCC-eEEEEEeecCCCCe
Q psy3475 100 PDPPSFIYWYRGANVVNY-SQRGGISVVTE-----KQTRTSRLVISKAVTSDS-GNYTCAPSSSDGAS 160 (207)
Q Consensus 100 ~~~~~~~~W~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~-g~Y~C~~~n~~~~~ 160 (207)
|.+ .+.|++++..+.. ..+........ .......|.|.++..+|. |.|+|.|.|..+..
T Consensus 258 p~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~ 323 (349)
T 4dep_C 258 SRN--EVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV 323 (349)
T ss_dssp CCC--EEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEE
T ss_pred CCC--EEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcE
Confidence 555 8999999987765 22211110000 011235699999999999 99999999985443
No 204
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.65 E-value=4e-15 Score=114.44 Aligned_cols=119 Identities=20% Similarity=0.311 Sum_probs=84.8
Q ss_pred EEEEcccCCCCCeEEEEEEecCC-c-----eeeeEEEEEEe------ccceEe-cCcceEEecCCcEEEEEEEeeCCCCC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP-K-----ISIGYKLNVVI------SKAKII-GNSELYIKSGSDINLTCVVLETPDPP 103 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~-~-----~~~~~~l~v~~------~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~ 103 (207)
.|.|.+++.+|+|.|+|.+.+.. . ......|.+.. +|.+.. .+....+..|+.+.|.|.+.+.|.+
T Consensus 159 ~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~- 237 (382)
T 1cs6_A 159 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVP- 237 (382)
T ss_dssp CEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCC-
T ss_pred EEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCC-
Confidence 79999999999999999998632 1 12234455432 333322 2456778899999999999998877
Q ss_pred cEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC---eEEEEEec
Q psy3475 104 SFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA---SVVVHVLN 167 (207)
Q Consensus 104 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~---~~~~~v~~ 167 (207)
.+.|++++..+.... ......|.|.++..+|.|.|+|.+.|..+. ...+.+..
T Consensus 238 -~i~W~~~~~~~~~~~----------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 293 (382)
T 1cs6_A 238 -QIKWRKLDGSQTSKW----------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 293 (382)
T ss_dssp -EEEEEECCSCCSCCC----------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred -EEEEEECCcccccEE----------ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec
Confidence 899999776543211 123468999999999999999999998333 33444443
No 205
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.65 E-value=9.1e-15 Score=103.59 Aligned_cols=147 Identities=22% Similarity=0.272 Sum_probs=89.5
Q ss_pred CeeEEccCCccceeeEEE---EeCCCeEEEeec-CCCCcEEEEEcccCCCCCeEEEEEEecCC----------c--eeee
Q psy3475 1 VSWIRKRDLHILTVGILT---YTNDLRFTSLHS-DGSDEWTLKIASSQLRDSGTYECQVSTEP----------K--ISIG 64 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~---~~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----------~--~~~~ 64 (207)
|+|||+.++..+....+. ...++||.+..+ ...+.++|.|.+++.+|+|.|.|.+.+.. . ....
T Consensus 32 v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~ 111 (207)
T 1ypz_E 32 VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQG 111 (207)
T ss_dssp EEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECBCCCTTCCCCCCCCEECCC
T ss_pred EEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecCCcccccccccceeeecCc
Confidence 589999865444332211 113578888766 44567899999999999999999998632 1 2244
Q ss_pred EEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEeccc-
Q psy3475 65 YKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT- 143 (207)
Q Consensus 65 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~- 143 (207)
..|.|....... .++.+.+..+ .+.|.|.+.+.+++...+.|+++ ..+..... .. ... ....+.+.....
T Consensus 112 t~L~V~~~~~~~-~~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~~-~~--~~~---~~g~y~~~~~~~~ 182 (207)
T 1ypz_E 112 TQVTVEPKSQPP-AKPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KKIVEFDP-AI--VIS---PSGKYSAVKLGQY 182 (207)
T ss_dssp EEEEEECCCCCC-CCCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SEEEECCC-EE--EEC---TTSSEEEEECEEE
T ss_pred cEEEEccCCCCC-CCCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-CcccCCcc-ce--EEc---CCCcEEEEEeecc
Confidence 677776532111 1222323222 36899999987543348999998 66543211 11 111 111233323333
Q ss_pred CCCeEEEEEeecC
Q psy3475 144 SDSGNYTCAPSSS 156 (207)
Q Consensus 144 ~d~g~Y~C~~~n~ 156 (207)
+|.|.|+|.+.|.
T Consensus 183 ~~~~~ytC~v~~~ 195 (207)
T 1ypz_E 183 GDSNSVTCSVQHN 195 (207)
T ss_dssp SSTTTCEEEEEET
T ss_pred cCCCcEEEEEEEC
Confidence 6789999999997
No 206
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.65 E-value=4.1e-15 Score=114.74 Aligned_cols=138 Identities=19% Similarity=0.306 Sum_probs=91.7
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCCe---EEEEEEecCCc-eeeeE---EEEEEecc--------ceEecCcceEEec
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDSG---TYECQVSTEPK-ISIGY---KLNVVISK--------AKIIGNSELYIKS 86 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G---~Y~C~~~~~~~-~~~~~---~l~v~~~~--------~~~~~~~~~~~~~ 86 (207)
+.++....++ +|.|.+++.+|+| .|+|.+.+... ..... .+.+...+ .....+....+..
T Consensus 152 ~~~~~~~~~~-----~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 226 (395)
T 1bih_A 152 DRRITAGPDG-----NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKA 226 (395)
T ss_dssp CTTEEECTTS-----CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEET
T ss_pred cccEEEcCCC-----cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEEC
Confidence 4555544333 6999999999999 99999987432 21111 11111100 1111345677889
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC----eEE
Q psy3475 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA----SVV 162 (207)
Q Consensus 87 g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~----~~~ 162 (207)
|+.+.|.|.+.+.|.+ .+.|++++..+......++... .......|.|.++..+|+|.|+|.+.|..+. ...
T Consensus 227 G~~v~l~C~~~g~p~~--~i~W~~~g~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~ 302 (395)
T 1bih_A 227 GDVTMIYCMYGSNPMG--YPNYFKNGKDVNGNPEDRITRH--NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLK 302 (395)
T ss_dssp TSCEEEEEEEECSSCC--CCEEEETTEECCCCTTSSEESC--SSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEE
T ss_pred CCcEEEEEEeccCCCC--eEEEEECCEEcCCCCceeEEEE--ecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEE
Confidence 9999999999998877 7999999988765443332211 1122347999999999999999999998443 445
Q ss_pred EEEecC
Q psy3475 163 VHVLNG 168 (207)
Q Consensus 163 ~~v~~~ 168 (207)
+.|..+
T Consensus 303 l~V~~~ 308 (395)
T 1bih_A 303 LTVVSA 308 (395)
T ss_dssp EEEEEE
T ss_pred EEEEcC
Confidence 555543
No 207
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.65 E-value=7.5e-16 Score=117.94 Aligned_cols=99 Identities=23% Similarity=0.279 Sum_probs=77.4
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV 114 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~ 114 (207)
..+|.|.+++.+|+|.|+|.+.+. ...+.|.|... .. +....+..|+.+.|.|.+.+.|.+ .+.|++++..
T Consensus 66 ~~~L~I~~v~~~D~G~Y~C~~~n~---~~~~~l~V~~~---~~-~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~ 136 (363)
T 1wio_A 66 NFPLIIKNLKIEDSDTYICEVEDQ---KEEVQLLVFGL---TA-NSDTHLLQGQSLTLTLESPPGSSP--SVQCRSPRGK 136 (363)
T ss_dssp CCCEEECSCCGGGCEEEEEEETTE---EEEEEEEEEEE---EE-SSCSSEESBSCEEEEEECCTTCCC--CEEEECSSSC
T ss_pred eEEEEECCCCHHHCEEEEEEEEEC---CCcEEEEEEeC---CC-CCceEEecCCCEEEEEEcCCCCCC--eEEEEcCCCc
Confidence 457999999999999999999764 23566666541 12 223457899999999999887777 8999998754
Q ss_pred EEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 115 VNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.. ....|.|.++..+|+|.|+|.+.|.
T Consensus 137 ~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~~~ 164 (363)
T 1wio_A 137 NIQ--------------GGKTLSVSQLELQDSGTWTCTVLQN 164 (363)
T ss_dssp EEE--------------ESSEEEECSBCGGGCEECEEEEEET
T ss_pred ccc--------------cceEEEEeeCChhcCCEEEEEEecC
Confidence 321 2358999999999999999999987
No 208
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=116.90 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=81.0
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCc-eeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEee----------CCCCC
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLE----------TPDPP 103 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----------~~~~~ 103 (207)
...|.|.+++.+|+|.|+|.+.+... ....+.|.|..++.....+....+..|+.+.|.|.+.+ .|.+
T Consensus 60 ~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~- 138 (317)
T 2y25_A 60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDL- 138 (317)
T ss_dssp CEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSC-
T ss_pred eEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCc-
Confidence 46899999999999999999987433 34444444443333222233333446677777776655 4555
Q ss_pred cEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 104 SFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 104 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
.+.|++++..+....+ +.... ......|.|.++..+|.|.|+|.+.|..+.
T Consensus 139 -~i~W~~~~~~~~~~~~--~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 189 (317)
T 2y25_A 139 -KVNWSHNGSAIRYSDR--VKTGV--TGEQIWLQINEPTPNDKGKYVMELFDGKTG 189 (317)
T ss_dssp -EEEEEESSSBCCCCSS--EEEEE--CSSEEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred -EEEEEECCEECCCCCC--eEEec--cCCEEEEEECcCCcccCeeEEEEEEeCCce
Confidence 8999999987765433 22222 224567999999999999999999998443
No 209
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.64 E-value=5.2e-16 Score=112.39 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=74.8
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCc---eeeeEEE--EEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPK---ISIGYKL--NVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR 110 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l--~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~ 110 (207)
..|.|.+++.+|+|.|+|.+.+... ....+.+ .+..+|.+...+.......|+.+.|.|.+.+.+++...+.|++
T Consensus 82 s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k 161 (239)
T 1i1c_A 82 SELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKM 161 (239)
T ss_dssp EEEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EEEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEE
Confidence 4799999999999999999987432 2222222 2334454433332222235788999999999655445899999
Q ss_pred CCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 111 GANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+|..+......+.....++ ....+.|.+.....+|.|.|+|.|.|.
T Consensus 162 ~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~ 208 (239)
T 1i1c_A 162 NGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE 208 (239)
T ss_dssp TTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred CCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECC
Confidence 9987643211111111111 112234556555556799999999998
No 210
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.63 E-value=4.5e-15 Score=111.52 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=84.2
Q ss_pred EEEEEcccCCCCCeEEEEEEecC------CceeeeEEEEEEec---cceEecCcceEEecCCcEEEEEEEeeCCCCCcEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTE------PKISIGYKLNVVIS---KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFI 106 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~------~~~~~~~~l~v~~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~ 106 (207)
..|.|.+++.+|+|.|+|.+.+. ......+.|.|... |.+...+.. .+..|+.++|.|.+.+ +.+ .+
T Consensus 74 ~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~-~~~--~~ 149 (316)
T 3vh8_G 74 ESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGP-LVKSGERVILQCWSDI-MFE--HF 149 (316)
T ss_dssp SCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCS-EEETTCCEEEEEEESS-CCS--EE
T ss_pred EEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCC-ccCCCCeEEEEEcCCC-CCc--EE
Confidence 47999999999999999998752 12345567777653 233333333 3788999999999953 334 78
Q ss_pred EEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC--------CCeEEEEEec
Q psy3475 107 YWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD--------GASVVVHVLN 167 (207)
Q Consensus 107 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~--------~~~~~~~v~~ 167 (207)
.|++++..+....... . .........|.|.+++.+|+|.|+|.+.|.. +..+.+.|..
T Consensus 150 ~w~k~g~~~~~~~~~~-~--~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~ 215 (316)
T 3vh8_G 150 FLHKEGISKDPSRLVG-Q--IHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG 215 (316)
T ss_dssp EEEETTCCSCCEEEEC-E--EETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC
T ss_pred EEEECCCccccceeee-e--ecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC
Confidence 9999887653211100 0 0001235689999999999999999999873 3345566654
No 211
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.63 E-value=1.1e-14 Score=113.91 Aligned_cols=122 Identities=15% Similarity=0.227 Sum_probs=82.7
Q ss_pred CCCCCeEEEEEEecCCce--eeeEEEEEEeccceEecCcceEEecCCcEEEEEEEee-CCCCCcEEEEEeCCEEEEecCC
Q psy3475 44 QLRDSGTYECQVSTEPKI--SIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQR 120 (207)
Q Consensus 44 ~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~ 120 (207)
+..|+|.|+|.|.|.... ...+.|.|..++.. .+....+..|+.+.|.|.+.+ .|.+ .+.|++++..+.....
T Consensus 199 ~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p--~i~W~k~g~~l~~~~~ 274 (423)
T 3qs7_E 199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGF--GLTWELENKALEEGNY 274 (423)
T ss_dssp CCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEETTSCEEEEEEEEESSSCC--CEEEEESSSBCCGGGE
T ss_pred ecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCc--EEEEEECCEEccccce
Confidence 689999999999985432 23355665554432 445677889999999999998 4556 7999999886643211
Q ss_pred CceEEEEec--ccceEEEEEEecccCCCeEEEEEeecCCCCeEEEEEecCC
Q psy3475 121 GGISVVTEK--QTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHVLNGK 169 (207)
Q Consensus 121 ~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~~~~~v~~~~ 169 (207)
......... ......|.|.++..+|+|.|+|.|.|.....+.|.|...+
T Consensus 275 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~~~~~~L~V~~~p 325 (423)
T 3qs7_E 275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKG 325 (423)
T ss_dssp EEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTEEEEEEEEEEESSC
T ss_pred eecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecCCCceEEEEEEeCC
Confidence 000000000 1123579999999999999999999984444566666544
No 212
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.63 E-value=4e-16 Score=117.00 Aligned_cols=138 Identities=20% Similarity=0.322 Sum_probs=91.2
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEe-ccceEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVI-SKAKIIG 78 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~-~~~~~~~ 78 (207)
|.|||.+...... ...+.|+... .+ +|.|.+++.+|+|.|+|.+.+. +.....+.+.+.. +|.+...
T Consensus 38 v~W~k~~~~~~~~-----~~~~~~~~~~--~~----~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~~~~p~~~~~ 106 (315)
T 1itb_B 38 ITWYKDDSKTPVS-----TEQASRIHQH--KE----KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYN 106 (315)
T ss_dssp CCEECTTSCSCSC-----CCTTSSSEEC--SS----BEECTTCCGGGCSCCEECCCSSSCCCCEECCCEEECCCTTSSSC
T ss_pred EEEEeCCCcCccc-----cccCCcEecc--CC----eEEECCCChhhCEEEEEEEeCCceEEEEEEEEEEeCCCCCcccc
Confidence 6799875322111 1234555533 22 7999999999999999999874 2333333444433 2222111
Q ss_pred C---cceEEecCCcEEEEEEE------eeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEE
Q psy3475 79 N---SELYIKSGSDINLTCVV------LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNY 149 (207)
Q Consensus 79 ~---~~~~~~~g~~~~l~C~~------~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y 149 (207)
+ ....+..|+.+.|.|.+ .+.|.+ .+.|++++..+..... ++.. ....|.|.+++.+|+|.|
T Consensus 107 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~--~i~W~k~~~~l~~~~~-~~~~------~~~~L~i~~v~~~d~G~Y 177 (315)
T 1itb_B 107 AQAIFKQKLPVAGDGGLVCPYMEFFKNENNELP--KLQWYKDCKPLLLDNI-HFSG------VKDRLIVMNVAEKHRGNY 177 (315)
T ss_dssp GGGEEEEEEETTSCEEEECSSCTTTCTTTTCCC--CCEEEETTEECCCCSS-SEEE------ETTEEEESSCCGGGCEEE
T ss_pred cccccceEEecCCCeEEEEecccccccCCCCCC--EEEEEECCEECCCccc-eEee------cCceEEEEeceehhCcEE
Confidence 1 23457789999999998 666666 7999999998865322 2211 234899999999999999
Q ss_pred EEEee-cCCC
Q psy3475 150 TCAPS-SSDG 158 (207)
Q Consensus 150 ~C~~~-n~~~ 158 (207)
+|.+. |..+
T Consensus 178 ~C~a~~n~~g 187 (315)
T 1itb_B 178 TCHASYTYLG 187 (315)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEcCCCC
Confidence 99999 5533
No 213
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.63 E-value=2.4e-14 Score=100.57 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=77.9
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCC-ce-----eeeEEEEEEeccceEecCcceEEecCCcEEEEEEEe-eCCCCCcEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEP-KI-----SIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVL-ETPDPPSFIY 107 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~-~~-----~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~~ 107 (207)
..+|.|.+++.+|+|.|+|.+.+.. .. ...+.|.|..++..... .......|+.+.|.|.+. +.|.| .+.
T Consensus 64 ~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~-~~~~~~~g~~~~l~C~~~~g~P~p--~i~ 140 (201)
T 1dr9_A 64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI-SDFEIPTSNIRRIICSTSGGFPEP--HLS 140 (201)
T ss_dssp TTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEE-EEEECSSTTEEEEEEEEEEESSCE--EEE
T ss_pred CcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCce-EeccCCCCCeEEEEEecCCccCCC--EEE
Confidence 4589999999999999999999742 22 34556666654211000 001113578899999995 77777 899
Q ss_pred EEeCCEEEEecCCCceEEEEecc-cceEEEEEEecccCCCeEEEEEeecCCCCeEEE
Q psy3475 108 WYRGANVVNYSQRGGISVVTEKQ-TRTSRLVISKAVTSDSGNYTCAPSSSDGASVVV 163 (207)
Q Consensus 108 W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~~~~ 163 (207)
|+++|..+..... ....+.. .......+..+..+|.|.|+|.|.|..+.....
T Consensus 141 W~k~g~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~ 194 (201)
T 1dr9_A 141 WLENGEELNAINT---TVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQT 194 (201)
T ss_dssp EEESSCEECCSEE---EEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEE
T ss_pred EEECCEECccccc---eEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeE
Confidence 9999987764311 1111111 111222334456689999999999995544433
No 214
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.62 E-value=4.6e-15 Score=111.45 Aligned_cols=113 Identities=18% Similarity=0.189 Sum_probs=73.1
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCc------eeeeEEEEEEec---cceEecCcceEEecCCcEEEEEEEeeCCCCCcE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPK------ISIGYKLNVVIS---KAKIIGNSELYIKSGSDINLTCVVLETPDPPSF 105 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~ 105 (207)
...|.|.+++.+|+|.|+|.+.|... ....+.|.|... |.+...+ ...+..|+.++|.|.+.. +.+ .
T Consensus 173 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~-~~~--~ 248 (316)
T 3vh8_G 173 KANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQP-GPKVQAGESVTLSCSSRS-SYD--M 248 (316)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEES-CSCCCTTSCCEEEEEESS-CCS--E
T ss_pred eEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCC-CCeecCCCcEEEEEECCC-CCc--E
Confidence 34799999999999999999987422 255567777642 3332223 235678999999999974 444 8
Q ss_pred EEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 106 IYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 106 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.|+++|..+...... ...........|.|.+++ |+|.|+|.+.|.
T Consensus 249 ~~W~k~g~~~~~~~~~---~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~ 294 (316)
T 3vh8_G 249 YHLSREGGAHERRLPA---VRKVNRTFQADFPLGPAT--HGGTYRCFGSFR 294 (316)
T ss_dssp EEEEETTSSCCEEEEC---EECTTSCEEEEEECC-------CEEEEEEEBT
T ss_pred EEEEECCCcCCCceec---eeccCCceeEEEEcCCcC--CCEEEEEEeecC
Confidence 9999988765432110 000001233689999998 999999999985
No 215
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.62 E-value=6.4e-16 Score=116.57 Aligned_cols=121 Identities=12% Similarity=0.161 Sum_probs=78.1
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEE------eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVV------ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~ 109 (207)
..|.|.+++.+|+|.|+|.+.|... .....+.|. .+|.+...+.......|+.+.|.|.+.+.+++...+.|+
T Consensus 178 ~~L~I~~~~~~D~G~Y~C~a~n~~~-~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~ 256 (323)
T 2wqr_A 178 STLPVGTRDWIEGETYQCRVTHPHL-PRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWL 256 (323)
T ss_dssp EEEECCHHHHHTTCCEEEEEECTTS-SSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred EEEEECHHHccCCCCEEEEEECCCC-CCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEE
Confidence 3799999999999999999987431 122233332 333332222211122399999999999865444489999
Q ss_pred eCCEEEEecCCC--ceEEEEec-ccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 110 RGANVVNYSQRG--GISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 110 ~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
++|..+...... ......++ ....+.|.|..+..+|.|.|+|.|.|..
T Consensus 257 k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~ 307 (323)
T 2wqr_A 257 HNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEA 307 (323)
T ss_dssp ETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTT
T ss_pred ECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCC
Confidence 999987542110 00000000 1124579999999999999999999983
No 216
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.62 E-value=2.7e-14 Score=112.19 Aligned_cols=113 Identities=13% Similarity=0.187 Sum_probs=87.6
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCc-eeeeEEEEEEeccceE-ecCcceEEecCCcEEEEEEEeeCCCCC-cEEEEEeC
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNVVISKAKI-IGNSELYIKSGSDINLTCVVLETPDPP-SFIYWYRG 111 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~~~W~~~ 111 (207)
...|.|.+++. |+| |+|.+.+.+. ....+.|.|..+|... ..+....+..|+.+.|.|.+.+.+.+. ..+.|+++
T Consensus 49 ~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~ 126 (450)
T 1z7z_I 49 RKVYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRG 126 (450)
T ss_dssp EEEEEEEEECS-CBC-CEEEEEETTEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEET
T ss_pred ceEEEEEeccc-CCe-eEEEEeCCCCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeC
Confidence 34799999988 999 9999976433 5667788888877665 345667788999999999999975542 26899999
Q ss_pred CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+..+....... ......|.|..+..+|.|.|+|.+.|.
T Consensus 127 g~~l~~~~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 164 (450)
T 1z7z_I 127 EKELKREPAVG-------EPAEVTTTVLVRRDHHGANFSCRTELD 164 (450)
T ss_dssp TEEEEEEECCT-------TTEEEEEEEECCSSCSSCEEEEEEEEE
T ss_pred CEEeecccccc-------cccceEEEEEeeccccCceEEEEEEcc
Confidence 99886543211 123468999999999999999999987
No 217
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.61 E-value=1e-15 Score=108.40 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=68.1
Q ss_pred EEEcccCCCCCeEEEEEEecCCc-eeeeEEE----EEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC
Q psy3475 38 LKIASSQLRDSGTYECQVSTEPK-ISIGYKL----NVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA 112 (207)
Q Consensus 38 L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l----~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~ 112 (207)
|.|.....+|+|.|+|.+.+... ......+ .+..+|.+...+.......|..+.|.|.+.+.+++...+.|+++|
T Consensus 70 l~i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g 149 (207)
T 1l6x_A 70 LTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNG 149 (207)
T ss_dssp EECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred EEEEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECC
Confidence 44444445569999999987432 2122222 233444433322221123466699999999964444489999999
Q ss_pred EEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 113 NVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
..+......+.....++ ....+.|.+.....+|.|.|+|.|.|.
T Consensus 150 ~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~ 194 (207)
T 1l6x_A 150 QPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE 194 (207)
T ss_dssp EEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred eeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcC
Confidence 87753211111111111 111234566655667899999999997
No 218
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.61 E-value=6.5e-16 Score=117.07 Aligned_cols=129 Identities=17% Similarity=0.309 Sum_probs=88.4
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-----ceeeeEEEEEEe-----ccceEecCcceEEecCCcEEE
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-----KISIGYKLNVVI-----SKAKIIGNSELYIKSGSDINL 92 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~~-----~~~~~~~~~~~~~~~g~~~~l 92 (207)
.++.+.... ..|.|.+++.+|+|.|+|.+.|.. .....+.|.|.. +|.+...+....+..|+.+.|
T Consensus 171 ~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L 246 (339)
T 3o4o_C 171 EKFLSVRGT----THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTI 246 (339)
T ss_dssp SSEEECTTS----SEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCC
T ss_pred ceeEEcCCc----ceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEE
Confidence 455544322 389999999999999999998732 245667777764 334444455667788999999
Q ss_pred EEEE---eeCC-CCCcEEEEEeCCEEEEecCC-Cc------eEEEEec-ccceEEEEEEecccCCC-eEEEEEeecCC
Q psy3475 93 TCVV---LETP-DPPSFIYWYRGANVVNYSQR-GG------ISVVTEK-QTRTSRLVISKAVTSDS-GNYTCAPSSSD 157 (207)
Q Consensus 93 ~C~~---~~~~-~~~~~~~W~~~~~~~~~~~~-~~------~~~~~~~-~~~~~~l~i~~~~~~d~-g~Y~C~~~n~~ 157 (207)
.|.+ .+.| .+ .+.|++++..+..... .+ +....++ ....+.|.|.++..+|. |.|+|.|.|..
T Consensus 247 ~C~~~~~~g~P~~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~ 322 (339)
T 3o4o_C 247 PCKVFLGTGTPLTT--MLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTL 322 (339)
T ss_dssp CCCEEESSSCCSSC--EEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETT
T ss_pred EEEEECCCCCCCCc--eEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEecc
Confidence 9999 7776 44 8999998876532211 01 1111010 00123799999999997 99999999983
No 219
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.61 E-value=6e-15 Score=92.34 Aligned_cols=83 Identities=19% Similarity=0.358 Sum_probs=67.8
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
||.+...+....+..|+.+.|.|.+.+.|.| .+.|++++..+......++..... .....|.|.+++.+|+|.|+|
T Consensus 5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p--~v~W~k~g~~i~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C 80 (100)
T 3knb_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTP--EVTWSCGGRKIHSQEQGRFHIENT--DDLTTLIIMDVQKQDGGLYTL 80 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCC--EEEEEETTEECCTTGGGTEEEEEC--SSEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEeCCCcEEEeCCCeEEEEEEEEEecCC--EEEEEECceEeeeeccceeeeecc--cceEEEEEcCCCccCCEEEEE
Confidence 4555555777889999999999999999888 899999999987665555554442 245789999999999999999
Q ss_pred EeecCCC
Q psy3475 152 APSSSDG 158 (207)
Q Consensus 152 ~~~n~~~ 158 (207)
.|.|..+
T Consensus 81 ~a~N~~G 87 (100)
T 3knb_A 81 SLGNEFG 87 (100)
T ss_dssp EEEETTE
T ss_pred EEEECCC
Confidence 9999843
No 220
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.61 E-value=6.4e-15 Score=109.13 Aligned_cols=121 Identities=18% Similarity=0.254 Sum_probs=80.3
Q ss_pred CCCCeEEEEEEecCCc--eeeeEEEEEEe--ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCC
Q psy3475 45 LRDSGTYECQVSTEPK--ISIGYKLNVVI--SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR 120 (207)
Q Consensus 45 ~~d~G~Y~C~~~~~~~--~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~ 120 (207)
..|+|.|+|.+.+... ......|.|.. ++.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++........
T Consensus 150 ~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p--~v~W~~~~~~~~~~~~ 227 (289)
T 3mjg_X 150 IFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVV--NFEWTYPRKESGRLVE 227 (289)
T ss_dssp CCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSB--EEEEECTTSSSSCCCC
T ss_pred eccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCc--ceEEEcCCccCCCccc
Confidence 6799999999986433 23345566654 4555555555678899999999999998777 8999976543221111
Q ss_pred CceEEEEe-cccceEEEEEEecccCCCeEEEEEeecCCCC---eEEEEEec
Q psy3475 121 GGISVVTE-KQTRTSRLVISKAVTSDSGNYTCAPSSSDGA---SVVVHVLN 167 (207)
Q Consensus 121 ~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~---~~~~~v~~ 167 (207)
........ .......|.|.++..+|.|.|+|.|.|..+. ...+.+..
T Consensus 228 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~ 278 (289)
T 3mjg_X 228 PVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278 (289)
T ss_dssp CEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred ccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEE
Confidence 00000000 0124578999999999999999999999443 34444443
No 221
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.61 E-value=7.7e-15 Score=92.99 Aligned_cols=90 Identities=27% Similarity=0.525 Sum_probs=70.1
Q ss_pred eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEE
Q psy3475 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 150 (207)
.||.++..+....+..|+.+.|.|.+.+.|.| .+.|++++..+..+.+ +....+ .....|.|.+++.+|+|.|+
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p--~v~W~k~g~~l~~~~~--~~~~~~--~~~~~L~I~~v~~~D~G~Y~ 85 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPP--VVVWEKGGQQLAASER--LSFPAD--GAEHGLLLTAALPTDAGVYV 85 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCC--EEEEEETTEECCCCSS--EECCEE--TTEEEEEESSCCGGGCEEEE
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCC--EEEEEECcccccceee--EEEeec--CceEEEEEecCChhhCEEEE
Confidence 35666667888889999999999999999888 8999999998876544 333222 24568999999999999999
Q ss_pred EEeecCCCC---eEEEEEe
Q psy3475 151 CAPSSSDGA---SVVVHVL 166 (207)
Q Consensus 151 C~~~n~~~~---~~~~~v~ 166 (207)
|.|.|..+. ...|.|.
T Consensus 86 C~a~N~~G~~~~~~~l~V~ 104 (107)
T 3knb_B 86 CRARNAAGEAYAAAAVTVL 104 (107)
T ss_dssp EEEEETTEEEEEEEEEEEE
T ss_pred EEEEECCCEEEEEEEEEEE
Confidence 999998432 3344444
No 222
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.61 E-value=7.9e-15 Score=105.62 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=76.3
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEE------eccceEe-cCcceEEecCCcEEEEEEEeeCCCCCcEEEE
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVV------ISKAKII-GNSELYIKSGSDINLTCVVLETPDPPSFIYW 108 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~------~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W 108 (207)
..|.|.+++.+|+|.|+|.+.+... .....+.|. .+|.+.. .+.... ..+..+.|.|.+.+.+++...+.|
T Consensus 77 s~L~I~~~~~~D~g~Y~C~~~~~~~-~~~~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W 154 (231)
T 2w59_A 77 SAVPVSTQDWLSGERFTCTVQHEEL-PLPLSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRW 154 (231)
T ss_dssp EEEECCHHHHHTTCCEEEEEECTTC-SSCEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEE
T ss_pred EEEEecchhccCCCEEEEEEEcCCC-CCceEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEE
Confidence 3799999999999999999987432 123334442 2333322 222222 235579999999997544348999
Q ss_pred EeCCEEEEecCCCc--eEEE--------Ee-c-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 109 YRGANVVNYSQRGG--ISVV--------TE-K-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 109 ~~~~~~~~~~~~~~--~~~~--------~~-~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+++|..+....... +... .+ + ....+.|.|.....+|.|.|+|.|.|.
T Consensus 155 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~ 214 (231)
T 2w59_A 155 LRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHE 214 (231)
T ss_dssp EETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred EECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcC
Confidence 99999875432100 0110 11 1 112356888888888999999999998
No 223
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.61 E-value=4.9e-17 Score=135.55 Aligned_cols=129 Identities=19% Similarity=0.371 Sum_probs=0.0
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecC-Cce--eeeEEEEE--EeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEE
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTE-PKI--SIGYKLNV--VISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYW 108 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~--~~~~~l~v--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W 108 (207)
....|.|.+++.+|+|.|+|.+.|. +.. .....|.| ..+|.+...+....+..|+.+.|.|.+.+.|.| .+.|
T Consensus 623 ~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p--~v~W 700 (772)
T 3v2a_R 623 DILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPP--QIMW 700 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCC--eEEE
Confidence 3456999999999999999999883 222 22334444 566766666667778899999999999998888 8999
Q ss_pred EeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC---CCCeEEEEEecCCc
Q psy3475 109 YRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS---DGASVVVHVLNGKK 170 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~---~~~~~~~~v~~~~~ 170 (207)
++++..+....+ +... .....|.|.++..+|+|.|+|.|.|. ......|.|..++.
T Consensus 701 ~k~g~~l~~~~~--~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~ 759 (772)
T 3v2a_R 701 FKDNETLVEDSG--IVLK----DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 759 (772)
T ss_dssp -----------------------------------------------------------------
T ss_pred EECCeECcCCCC--eEEc----CCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCC
Confidence 999988865533 1111 13468999999999999999999998 33345666654443
No 224
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.61 E-value=1.2e-14 Score=114.11 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=78.9
Q ss_pred EEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEE------------------Eeccce-EecCcceE-EecCCcEEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNV------------------VISKAK-IIGNSELY-IKSGSDINLTCV 95 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v------------------~~~~~~-~~~~~~~~-~~~g~~~~l~C~ 95 (207)
.|.|.+++.+| |.|+|.+.|.. .......+.+ ..+|.+ +..+.... +..|+.+.|.|.
T Consensus 185 ~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~ 263 (444)
T 1igt_B 185 SVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCV 263 (444)
T ss_dssp EEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEE
T ss_pred EEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEE
Confidence 69999999999 99999999843 2222223222 112332 22232222 478999999999
Q ss_pred EeeCC--CCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 96 VLETP--DPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 96 ~~~~~--~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+.+.+ ++...+.|++++..+............++ ....+.|.|.++..+|.|.|+|.|.|..+
T Consensus 264 ~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 329 (444)
T 1igt_B 264 VVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL 329 (444)
T ss_dssp EEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred EeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCC
Confidence 99874 33338999999987654322111111111 12346899999999999999999999843
No 225
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}
Probab=99.61 E-value=8.4e-14 Score=98.50 Aligned_cols=152 Identities=21% Similarity=0.241 Sum_probs=104.5
Q ss_pred CeeEEccCCccceeeEEEEeC----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v 69 (207)
+.|+||.++..++....+... .+||.+..+...+...|.|.+++.+|++.|+|...... ..-....++|
T Consensus 34 ~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~~~~d~WGqGT~VTV 113 (254)
T 4f9p_D 34 IHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLSSLTSDDSAVYFCARSDYGAYWGQGTLVTV 113 (254)
T ss_dssp EEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEECEESSSCCEECCCEEEEE
T ss_pred EEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEccCCCCCCEEEEEEecCCCCCcCCCEEEEE
Confidence 479999999988877665432 38999999999999999999999999999999754321 1233445555
Q ss_pred Eec---------------------cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe--CCE---EEEecC----
Q psy3475 70 VIS---------------------KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR--GAN---VVNYSQ---- 119 (207)
Q Consensus 70 ~~~---------------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~--~~~---~~~~~~---- 119 (207)
... ......|..+.+.+|+.++|.|.++..... ++.|++ .|+ .+....
T Consensus 114 SSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~~~~~--~l~WyqQ~PG~~p~lLiy~~s~~~ 191 (254)
T 4f9p_D 114 SAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQSISN--NLHWYRQKSHESPRLLIKYASQSI 191 (254)
T ss_dssp CC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESSCCTT--CCEEEEECTTSCCEEEEETTTEEC
T ss_pred eCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccCcccC--CcEEEEECCCCCCEEEEEeeeecC
Confidence 321 012233556678899999999998765433 689986 332 222211
Q ss_pred ---CCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 120 ---RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 120 ---~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
..|+...- .....+|+|+.++.+|.+.|.|.-.+.
T Consensus 192 sGvp~RFSgS~--sgt~ftLtIs~lq~eD~A~YYC~q~~~ 229 (254)
T 4f9p_D 192 FGIPSRFSGSG--SGTEFTLSINSVETEDFGIYFCQQSNS 229 (254)
T ss_dssp TTSCTTCEEEC--CTTEEEEEEESCCTTCCEEEEEEECSS
T ss_pred CCCCCCEEeee--eCCEEEEEECCCCHHHCEEEEEeecCC
Confidence 11232221 234567999999999999999975544
No 226
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Probab=99.60 E-value=2.8e-14 Score=101.49 Aligned_cols=152 Identities=24% Similarity=0.394 Sum_probs=99.9
Q ss_pred CeeEEccCCccceeeEEEEe--C---CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC--ceeeeEEEEEEe--
Q psy3475 1 VSWIRKRDLHILTVGILTYT--N---DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVI-- 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~--~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~-- 71 (207)
+.||+|+++..++..++... . ..||+..+. ..+++|+|.+++.+|++.|+|...... .+-...+|.|.-
T Consensus 33 ~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~S--gt~ftLtIs~lq~eD~A~YyC~~~~~~~~tFG~GTkLeikr~~ 110 (259)
T 4f9l_D 33 LSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSGS--ATGFTLTISSLQPEDIATYYCQQGHSYPYTFGGGTKLDIKRAD 110 (259)
T ss_dssp EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE--TTEEEEEEESCCGGGCEEEEEEECSSSSCCBCCCCEECBCCC-
T ss_pred EEEEEECCCCCCEEEEECCCccCCCCCCCEEeecc--CCeEEEEEcccChhhCEEEEEeecCCCCCCccCCeEEEEeccc
Confidence 47999999988876554211 1 268886543 367899999999999999999875421 111222333320
Q ss_pred --c------c------------ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe--CCEE---------------
Q psy3475 72 --S------K------------AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR--GANV--------------- 114 (207)
Q Consensus 72 --~------~------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~--~~~~--------------- 114 (207)
| + .-..+.....+.+|..+.|.|.+++.......+.|++ .|+.
T Consensus 111 aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~aSG~tfs~y~~~WvRQaPGkgLEwvg~I~~~~g~t~ 190 (259)
T 4f9l_D 111 AGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKASGYTFTRYYLYWVKQRPGQGLEWIGEINPNNGGTK 190 (259)
T ss_dssp ---------------------CCCEEEECCCEEESSSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEE
T ss_pred cCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEeeeCCCcccCcEEEEEECCCCceEEEeEEeCCCCceE
Confidence 0 0 0111223345678999999999998754444678876 2221
Q ss_pred EEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEee
Q psy3475 115 VNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
...+.+.|+.+..+.......|.++.++.+|++.|.|.-.
T Consensus 191 Ya~svkGRfTISrD~s~nt~yLqm~sL~~eDTAvYYCAr~ 230 (259)
T 4f9l_D 191 FNEKFKSKATLTVDKSSRTTYIQLSSLTSEDSAVYYCSRE 230 (259)
T ss_dssp ECTTSTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred ecHhhcCCEEEEEEccccEEEEEECCCChHHCEEEEEEEe
Confidence 1123446777777777777889999999999999999643
No 227
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=112.60 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=89.7
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccce-EecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAK-IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
...+|.|.+++.+|+|.|+|.+.+. +.....+.|.|..++.. ...+....+..|+.+.|.|.+.+ +.+...+.|+++
T Consensus 49 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~ 127 (292)
T 4dkd_C 49 SSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRV 127 (292)
T ss_dssp TEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEG
T ss_pred ceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEec
Confidence 3558999999999999999999873 34566778888776653 44566777889999999999987 442127899986
Q ss_pred -CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC----CCeEEEEEec
Q psy3475 112 -ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD----GASVVVHVLN 167 (207)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~----~~~~~~~v~~ 167 (207)
+..+..... +.. .....|.|.++..+|.|.|+|.+.|.. +..+.+.|..
T Consensus 128 ~~~~~~~~~~--~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 181 (292)
T 4dkd_C 128 RGRPLMRHTN--YSF-----SPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQK 181 (292)
T ss_dssp GGCCCCSSCC--EEC-----CSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred CCCccccCCc--ccc-----cCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeC
Confidence 444432221 111 122349999999999999999999872 3355666664
No 228
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.59 E-value=2.9e-14 Score=102.53 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=89.6
Q ss_pred CeeEEccCCccceeeEEE---E--eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC---------ceeeeEE
Q psy3475 1 VSWIRKRDLHILTVGILT---Y--TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP---------KISIGYK 66 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~---~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---------~~~~~~~ 66 (207)
|+|||+.++..+....+. . ..++||.+..+...+.++|.|.+++.+|+|.|.|.+.+.. .......
T Consensus 35 v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~ 114 (229)
T 1hxm_A 35 INWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDTLGMGGEYTDKLIFGKGTR 114 (229)
T ss_dssp EEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECCCCSSSCCCCCEEBCCEE
T ss_pred EEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHCeEEEEEEecCCCcccccchhhcCccEE
Confidence 589999876544432211 0 1258999877655577899999999999999999997642 1234457
Q ss_pred EEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEec-ccCC
Q psy3475 67 LNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA-VTSD 145 (207)
Q Consensus 67 l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d 145 (207)
|.|........ ++.+.+.. ..+.|.|.+.+..++...+.|.++ ..+..... .. .... ...+.+... ...+
T Consensus 115 L~V~~~~~~~~-~P~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~~~~~~~-~~--~~~~---dg~y~~~~~~~~~~ 185 (229)
T 1hxm_A 115 VTVEPRSQPHT-KPSVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KKITEFDP-AI--VISP---SGKYNAVKLGKYED 185 (229)
T ss_dssp EEEECCSCCCB-CCEEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SEEEECCC-EE--EECT---TSSEEEEEEEEETT
T ss_pred EEEeccCCCCc-CCcEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CEEecCcc-ce--EECC---CCcEEEEECcccCC
Confidence 77764211111 12222222 234899999987555458999998 66543221 11 1111 112222222 3368
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
.|.|+|.+.+.
T Consensus 186 ~~~ytC~V~h~ 196 (229)
T 1hxm_A 186 SNSVTCSVQHD 196 (229)
T ss_dssp TTTCEEEEEET
T ss_pred CCcEEEEEEeC
Confidence 89999999997
No 229
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.59 E-value=2.9e-14 Score=103.36 Aligned_cols=122 Identities=15% Similarity=0.206 Sum_probs=87.3
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCC---ceeeeEEEEEEe---ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEE
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEP---KISIGYKLNVVI---SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIY 107 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~ 107 (207)
....|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|.. +|.+...+ ...+..|+.++|.|.+.+. .+ .+.
T Consensus 58 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~--~~~ 133 (242)
T 1p6f_A 58 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TS--MFL 133 (242)
T ss_dssp CEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CS--EEE
T ss_pred ceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEecCCC-CC--EEE
Confidence 45689999999999999999997632 234567777764 23333333 3457899999999998653 33 789
Q ss_pred EEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC------CCCeEEEEEec
Q psy3475 108 WYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS------DGASVVVHVLN 167 (207)
Q Consensus 108 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~------~~~~~~~~v~~ 167 (207)
|+++|..+.... . . ......|.|.+++.+|+|.|+|.+.|. .+..+.+.|..
T Consensus 134 w~k~g~~~~~~~----~--~--~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~ 191 (242)
T 1p6f_A 134 LLKEGRSSHVQR----G--Y--GKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG 191 (242)
T ss_dssp EEECSSSCEEEE----E--E--CSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred EEECCCccCccc----c--C--CCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence 999887554310 0 0 224578999999999999999999874 34456666664
No 230
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.59 E-value=2.6e-15 Score=113.21 Aligned_cols=127 Identities=18% Similarity=0.225 Sum_probs=78.7
Q ss_pred EEEEcccCCCCCeEEEEEEecCCceeeeEEEEE--E---ecc-ceEecCcceEEecCCcEEEEEEEeeCCCCC--cEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNV--V---ISK-AKIIGNSELYIKSGSDINLTCVVLETPDPP--SFIYW 108 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v--~---~~~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~~~~W 108 (207)
.|.|.+++.+|+|.|+|.+.+.... ....+.+ . ..+ ..+..+....+..|+.+.|.|.+.+.++.. ..+.|
T Consensus 73 ~l~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W 151 (323)
T 2wqr_A 73 ELTLSQKHWLSDRTYTCQVTYQGHT-FEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTW 151 (323)
T ss_dssp EEEEEHHHHHTTCCEEEEEEETTEE-EEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEE
T ss_pred EEEEcHHHcCCCCcEEEEEEeCCCC-cceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEE
Confidence 6889888889999999999975321 1112111 0 112 222334444567899999999999864322 37999
Q ss_pred EeCC-EEEEecCCCceEE-EEec-ccceEEEEEEecccCCCeEEEEEeecCC-CCeEEEEEe
Q psy3475 109 YRGA-NVVNYSQRGGISV-VTEK-QTRTSRLVISKAVTSDSGNYTCAPSSSD-GASVVVHVL 166 (207)
Q Consensus 109 ~~~~-~~~~~~~~~~~~~-~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~~-~~~~~~~v~ 166 (207)
++++ ..+..... ... ..++ ....+.|.|.++..+|+|.|+|.+.|.. +....+.+.
T Consensus 152 ~k~~g~~~~~~~~--~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~ 211 (323)
T 2wqr_A 152 SRASGKPVNHSTR--KEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTT 211 (323)
T ss_dssp EETTCCCCCCCCC--EEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEEC
T ss_pred EECCCcccccccC--CCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEE
Confidence 9964 43322110 000 0000 1124579999999999999999999984 444455553
No 231
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.59 E-value=4.2e-15 Score=114.97 Aligned_cols=122 Identities=23% Similarity=0.408 Sum_probs=84.7
Q ss_pred EEEEcccCCCC-CeEEEEEEecCCc----eeeeEEEEEEec-------cceEec---CcceEEecCCcEEEEEEEeeCCC
Q psy3475 37 TLKIASSQLRD-SGTYECQVSTEPK----ISIGYKLNVVIS-------KAKIIG---NSELYIKSGSDINLTCVVLETPD 101 (207)
Q Consensus 37 ~L~i~~~~~~d-~G~Y~C~~~~~~~----~~~~~~l~v~~~-------~~~~~~---~~~~~~~~g~~~~l~C~~~~~~~ 101 (207)
.|.|.+++.+| .|.|+|.+.+... ....+.+.|... |.+... +....+..|+.+.|.|.+.+.|.
T Consensus 172 ~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~ 251 (404)
T 3p3y_A 172 DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPT 251 (404)
T ss_dssp CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSC
T ss_pred cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCC
Confidence 69999999999 5999999987422 122345555432 221111 12355778999999999999877
Q ss_pred CCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC---eEEEEEec
Q psy3475 102 PPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA---SVVVHVLN 167 (207)
Q Consensus 102 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~---~~~~~v~~ 167 (207)
+ .+.|++++..+..... .. ......|.|.++..+|+|.|+|.+.|..+. ...+.+..
T Consensus 252 ~--~v~W~~~~~~~~~~~~---~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 311 (404)
T 3p3y_A 252 P--DIAWYKKGGDLPSDKA---KF----ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA 311 (404)
T ss_dssp C--EEEEEETTBCCCTTTE---EE----EGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred C--cEEEEECCEECCCCcc---cc----cccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC
Confidence 7 8999999887643321 11 113458999999999999999999998333 34455543
No 232
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.57 E-value=2.7e-14 Score=114.59 Aligned_cols=126 Identities=14% Similarity=0.198 Sum_probs=84.9
Q ss_pred EcccCCCCCeEEEEEEecCCce--eeeEEEEEEeccceEecCcceEEecCCcEEEEEEEe-eCCCCCcEEEEEeCCEEEE
Q psy3475 40 IASSQLRDSGTYECQVSTEPKI--SIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVL-ETPDPPSFIYWYRGANVVN 116 (207)
Q Consensus 40 i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~~W~~~~~~~~ 116 (207)
...++.+|+|.|+|.+.|.... ...+.|.|..+|.. .+....+..|+.+.|.|.+. +.|.+ .+.|++++..+.
T Consensus 195 ~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p--~i~W~k~g~~l~ 270 (527)
T 3qs9_E 195 EKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGF--GLTWELENKALE 270 (527)
T ss_dssp CSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCC--CEEEECSSSCCC
T ss_pred eeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCe--EEEEEECCEECC
Confidence 3445689999999999985432 23356666655543 55677788999999999997 77766 899999887654
Q ss_pred ecCCCceEEEEec--ccceEEEEEEecccCCCeEEEEEeecCCCCeEEEEEecCC
Q psy3475 117 YSQRGGISVVTEK--QTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHVLNGK 169 (207)
Q Consensus 117 ~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~~~~~v~~~~ 169 (207)
............. ......|.|.+++.+|+|.|+|.|.|.....+.+.|...+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~L~V~~~p 325 (527)
T 3qs9_E 271 EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKG 325 (527)
T ss_dssp GGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTEEEEEEEEEEC--C
T ss_pred CCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeCCCceEEEEEEccC
Confidence 3321111000000 1123569999999999999999999984444556555433
No 233
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.57 E-value=3e-14 Score=109.79 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=79.6
Q ss_pred EEEEEcccCCCCCeEEEEEEecCCc---eeeeEEE--EEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEPK---ISIGYKL--NVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR 110 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l--~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~ 110 (207)
..|.|.+++.+|.|.|+|.+.+... ....+.+ .+..+|.+...+.......|+.++|.|.+.+..++...|.|++
T Consensus 233 s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k 312 (376)
T 2aty_A 233 SELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQW 312 (376)
T ss_pred EEEEechHhccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEE
Confidence 3799999999999999999987422 2222222 3444555544444443445889999999999755556899999
Q ss_pred CCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 111 GANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+|..+............++ ....+.|.+.....+|.|.|+|.|.|.
T Consensus 313 ~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~ 359 (376)
T 2aty_A 313 NGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHE 359 (376)
T ss_pred CCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeC
Confidence 9987643221111111111 112356777777777899999999997
No 234
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.56 E-value=4.2e-15 Score=114.50 Aligned_cols=133 Identities=23% Similarity=0.359 Sum_probs=86.9
Q ss_pred CCeEEEeecCCCCcEEEEEcccCCCCC-eEEEEEEecCC--cee---eeEEEEEEeccc-----e-EecCcceEEecCCc
Q psy3475 22 DLRFTSLHSDGSDEWTLKIASSQLRDS-GTYECQVSTEP--KIS---IGYKLNVVISKA-----K-IIGNSELYIKSGSD 89 (207)
Q Consensus 22 ~~r~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~~~~--~~~---~~~~l~v~~~~~-----~-~~~~~~~~~~~g~~ 89 (207)
++|+.+..+. .|.|.+++.+|+ |.|+|.+.+.. ... ....|.|..+.. . ........+..|+.
T Consensus 155 ~~~~~~~~~~-----~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~ 229 (388)
T 2v5m_A 155 DGKYLVLPSG-----ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHT 229 (388)
T ss_dssp TTTEEECTTS-----CEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSC
T ss_pred CCcEEEccCC-----cEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCc
Confidence 4566554333 699999999999 99999998742 221 123556655421 1 11123456778999
Q ss_pred EEEEEEEeeCCCCCcEEEEEeCCEEEE----ecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC---eEE
Q psy3475 90 INLTCVVLETPDPPSFIYWYRGANVVN----YSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA---SVV 162 (207)
Q Consensus 90 ~~l~C~~~~~~~~~~~~~W~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~---~~~ 162 (207)
+.|.|.+.+.|.+ .+.|++++..+. .....++.. ....|.|.++..+|.|.|+|.+.|..+. ...
T Consensus 230 v~l~C~~~g~p~p--~v~W~~~~~~~~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 301 (388)
T 2v5m_A 230 ISLLCPAQGFPAP--SFRWYKFIEGTTRKQAVVLNDRVKQ------VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 301 (388)
T ss_dssp EEECCCCEEESCC--EEEEEEECTTSSCEEECCCSSSEEE------ETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred EEEEEECCCCCCC--EEEEEecCCCCcccccccccCceec------ccCEEEECcCCHHHCeEEEEEEecCCCceeEEEE
Confidence 9999999998877 899998643211 111111111 2357999999999999999999998433 334
Q ss_pred EEEec
Q psy3475 163 VHVLN 167 (207)
Q Consensus 163 ~~v~~ 167 (207)
+.|..
T Consensus 302 l~V~~ 306 (388)
T 2v5m_A 302 LTVTA 306 (388)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 54443
No 235
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.55 E-value=9.3e-14 Score=101.78 Aligned_cols=102 Identities=12% Similarity=0.220 Sum_probs=73.8
Q ss_pred EEEEccc---CCCCCeE--EEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe
Q psy3475 37 TLKIASS---QLRDSGT--YECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR 110 (207)
Q Consensus 37 ~L~i~~~---~~~d~G~--Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~ 110 (207)
.|.+..+ +.+|+|. |+|.+.+. +.....+.|.|...|.....+....+.+|+.+.|.|.+. |.+ .+.|
T Consensus 57 ~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~--~i~W-- 130 (265)
T 2oz4_A 57 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRA--KVTL-- 130 (265)
T ss_dssp EEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTS--EEEE--
T ss_pred eEEEEeecccccccCCcceEEEEEecCCCCcEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCC--EEEE--
Confidence 3444444 7788885 99999985 445677888887644333334456678899999999988 566 8999
Q ss_pred CCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 111 GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+|..+... .....|.+..+..+|.|.|+|.+.|.
T Consensus 131 ~g~~~~~~------------~~~~~l~i~~~~~~~~g~Y~C~a~n~ 164 (265)
T 2oz4_A 131 NGVPAQPL------------GPRAQLLLKATPEDNGRSFSCSATLE 164 (265)
T ss_dssp SSCSSSCC------------SSEECCEEECCGGGTTEEEEEEEEEE
T ss_pred CCEEccCC------------CCcEEEEEccccccCCceEEEEEEcC
Confidence 66655221 13457888999999999999999864
No 236
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.55 E-value=7.1e-14 Score=98.61 Aligned_cols=120 Identities=17% Similarity=0.155 Sum_probs=81.6
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCc-eeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeC-CCC--CcEEEEEe
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLET-PDP--PSFIYWYR 110 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~--~~~~~W~~ 110 (207)
...|.|.+++.+|+|.|.|.+.+... ....+.|.|..+|..+..... ....|+.+ |.|.+.+. |.+ ...|.|++
T Consensus 58 ~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk 135 (210)
T 1gsm_A 58 RSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLV 135 (210)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEE
T ss_pred ccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEE
Confidence 45899999999999999999998543 567789999988765433222 45578888 99999986 543 34899999
Q ss_pred CCEEEEecCCCceEEEE---e---c----ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 111 GANVVNYSQRGGISVVT---E---K----QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~---~---~----~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
++..+............ . . ....+.+.+.....+|.+.|+|.|.+.
T Consensus 136 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~ 191 (210)
T 1gsm_A 136 GGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMR 191 (210)
T ss_dssp TTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEE
T ss_pred CCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEee
Confidence 99987432110000100 0 0 112344555566667778999999997
No 237
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.55 E-value=8.2e-14 Score=112.93 Aligned_cols=117 Identities=22% Similarity=0.344 Sum_probs=80.5
Q ss_pred EEEEcccCCCCCeEEEEEEecCC-ce-eeeEEEEEEeccce-EecCcceEEecCCc-EEEEEEEeeC-CCCCcEEEEEeC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP-KI-SIGYKLNVVISKAK-IIGNSELYIKSGSD-INLTCVVLET-PDPPSFIYWYRG 111 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~-~~-~~~~~l~v~~~~~~-~~~~~~~~~~~g~~-~~l~C~~~~~-~~~~~~~~W~~~ 111 (207)
+|.|.+++.+|+|.|+|.+.+.. .. ...+.|.|..+|.. .+.+....+..|.. +.|.|.+.+. |.| .+.|+++
T Consensus 433 ~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~--~i~W~~~ 510 (581)
T 3o3u_N 433 SLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAG--TLSWHLD 510 (581)
T ss_dssp CEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCC--EEEEEET
T ss_pred eEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCC--eEEEEEC
Confidence 79999999999999999998743 33 56788888774422 22222233445554 4679999984 777 8999999
Q ss_pred CEEEEecCCCceEEE----Ee-c---ccceEEEEEEecc-cCCCeEEEEEeecC
Q psy3475 112 ANVVNYSQRGGISVV----TE-K---QTRTSRLVISKAV-TSDSGNYTCAPSSS 156 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~----~~-~---~~~~~~l~i~~~~-~~d~g~Y~C~~~n~ 156 (207)
+..+...... +... .+ . ....+.|.|..+. .++.|.|+|.++|.
T Consensus 511 g~~l~~~~~~-~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~ 563 (581)
T 3o3u_N 511 GKPLVPNEKG-VSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPG 563 (581)
T ss_dssp TEECCTTSTT-EEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECS
T ss_pred CEECCCCCCe-EEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEecc
Confidence 9988653321 1111 10 0 1234679998888 45588999999998
No 238
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.55 E-value=1.1e-13 Score=109.59 Aligned_cols=121 Identities=16% Similarity=0.152 Sum_probs=73.8
Q ss_pred EEEEcccCCCCCeEEEEEEecCCcee--eeEEEEEE------------------eccce-EecCcceEEecCCcEEEEEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPKIS--IGYKLNVV------------------ISKAK-IIGNSELYIKSGSDINLTCV 95 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~------------------~~~~~-~~~~~~~~~~~g~~~~l~C~ 95 (207)
.|.|.+++.+|+|.|+|.+.+..... ..+.|.|. .+|.+ +..+....+..|+.+.|.|.
T Consensus 191 ~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~ 270 (475)
T 1iga_A 191 QLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCT 270 (475)
T ss_pred EEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEE
Confidence 68999999999999999999754322 22232221 12222 22233333578999999999
Q ss_pred EeeCCC-CCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 96 VLETPD-PPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 96 ~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
+.+.++ ....+.| . +..+............++ ....+.|.|.++..+|.|.|+|.|.|..+.
T Consensus 271 ~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~ 334 (475)
T 1iga_A 271 LTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESK 334 (475)
T ss_pred EEcccCCCceEEEE-C-CCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCC
Confidence 998643 1138999 4 333321111110000000 113457999999999999999999998443
No 239
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.53 E-value=9.2e-13 Score=105.40 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=51.3
Q ss_pred eEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCC-CceEEEEec-ccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR-GGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 82 ~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
..+..|+.+.|.|.+.+..++...+.|+++|..+..... .......++ ....+.|.|.....+|.|.|+|.|.|..
T Consensus 307 ~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~ 384 (512)
T 1zvo_C 307 QDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPS 384 (512)
T ss_pred HHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCC
Confidence 335579999999999987444458999999987541111 000000010 1123578998888999999999999983
No 240
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.53 E-value=1.7e-14 Score=113.35 Aligned_cols=105 Identities=12% Similarity=0.179 Sum_probs=81.9
Q ss_pred cEEEEEcccCCCCCeEEEEEEec-CC-c---eeeeEEEEEEeccceEecC--cceEEecCCcEEEEEEEeeCCCCCcEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVST-EP-K---ISIGYKLNVVISKAKIIGN--SELYIKSGSDINLTCVVLETPDPPSFIY 107 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~-~~-~---~~~~~~l~v~~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~~~ 107 (207)
...|.|.+++.+|+|.|+|.+.| .+ . ....+.|.|..+|.+...+ ....+..|+.+.|.|.+.+.|.| .+.
T Consensus 326 ~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p--~i~ 403 (450)
T 1z7z_I 326 RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP--ELK 403 (450)
T ss_dssp CCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCC--EEE
T ss_pred eEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCC--cEE
Confidence 34799999999999999999985 33 2 2466788888887665543 56678899999999999999888 899
Q ss_pred EEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 108 WYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 108 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
|++++..+.... ..+ .++.+|+|.|+|.|.|..+
T Consensus 404 W~~~g~~~~~~g--------------~~~---~v~~~d~G~Y~C~a~N~~G 437 (450)
T 1z7z_I 404 CLKDGTFPLPIG--------------ESV---TVTRDLEGTYLCRARSTQG 437 (450)
T ss_dssp EEETTTEECCTT--------------SCE---ECCGGGCEEEEEEEEETTE
T ss_pred EEECCcccCCCC--------------CeE---eEehhhCeEEEEEEEeCCC
Confidence 999887432211 112 5788999999999999843
No 241
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.52 E-value=1.6e-14 Score=120.47 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=32.9
Q ss_pred cEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecC---cceEEecCCcEEEEEEEeeCCCCCcEEEEEe
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGN---SELYIKSGSDINLTCVVLETPDPPSFIYWYR 110 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~---~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~ 110 (207)
...|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.....+ ....+..|+.+.|.|.+.+.|.+ .+.|++
T Consensus 289 ~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~ 366 (772)
T 3v2a_R 289 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP--EIKWYK 366 (772)
T ss_dssp EEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC---------------------------------------
T ss_pred EEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCC--eEEEEE
Confidence 348999999999999999999874 335667788888877554332 34567789999999999998777 889999
Q ss_pred CCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 111 GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+|..+..... ......|.|.++..+|.|.|+|.+.|.
T Consensus 367 ~g~~l~~~~~---------~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 403 (772)
T 3v2a_R 367 NGIPLESNHT---------IKAGHVLTIMEVSERDTGNYTVILTNP 403 (772)
T ss_dssp ----------------------------------------------
T ss_pred CCEeCCCCce---------EccceeEEEecCChhcCceEEEEEEEC
Confidence 9987765322 112468999999999999999999997
No 242
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.52 E-value=7.3e-14 Score=101.69 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=62.5
Q ss_pred cCCCCCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCC---CcEEEEEeC--CEEE--
Q psy3475 43 SQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDP---PSFIYWYRG--ANVV-- 115 (207)
Q Consensus 43 ~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~~~W~~~--~~~~-- 115 (207)
++++|+|.|+|.+. +.......+.+..++.+...+..+.+..|+.+.|.|.+.+.+.. ...+.|+++ +..+
T Consensus 11 v~~~dsg~Y~C~a~--g~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~ 88 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS--GYSFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKR 88 (254)
T ss_dssp -----------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEE
T ss_pred ecCCccEEEEEcCc--hhhhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceE
Confidence 68999999999997 33223334444445555566778889999999999999887621 127999973 3221
Q ss_pred -Ee-------cCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC----CeEEEEEec
Q psy3475 116 -NY-------SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG----ASVVVHVLN 167 (207)
Q Consensus 116 -~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~----~~~~~~v~~ 167 (207)
.. ....++.... ......|.|.+++.+|+|.|+|.+.|..+ ....+.+..
T Consensus 89 ~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~ 150 (254)
T 2c1o_A 89 LIYLVSKLDSGDPDRFTGSG--SGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKR 150 (254)
T ss_dssp EEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECC
T ss_pred EEEeccccCCCccceEEEec--CCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECC
Confidence 11 1112333332 22456899999999999999999998732 233555543
No 243
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.52 E-value=2.6e-13 Score=103.90 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=76.7
Q ss_pred CcEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEeccceEecCcceE-EecCC-cEEEEEEEeeCCCCC-cEEEEE
Q psy3475 34 DEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELY-IKSGS-DINLTCVVLETPDPP-SFIYWY 109 (207)
Q Consensus 34 ~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~-~~~g~-~~~l~C~~~~~~~~~-~~~~W~ 109 (207)
++++|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+...+.... +..|+ .++|.|.+.+..+.. ..+.|.
T Consensus 252 g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW~ 331 (401)
T 3f8u_B 252 GNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWE 331 (401)
T ss_dssp EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSSTTCEEEEE
T ss_pred CcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCCCCcEEEEE
Confidence 57899999999999999999998643 345567888888776655544333 34676 799999999975442 489995
Q ss_pred -eCC---EEEEecCC---CceEEEEec-ccceEEEEEEeccc-CCCeEEEEEeecC
Q psy3475 110 -RGA---NVVNYSQR---GGISVVTEK-QTRTSRLVISKAVT-SDSGNYTCAPSSS 156 (207)
Q Consensus 110 -~~~---~~~~~~~~---~~~~~~~~~-~~~~~~l~i~~~~~-~d~g~Y~C~~~n~ 156 (207)
+++ ..+..... .......++ ....+.|.+..... .+.+.|+|.+.+.
T Consensus 332 ~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~ 387 (401)
T 3f8u_B 332 LRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHP 387 (401)
T ss_dssp EESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECT
T ss_pred ecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcC
Confidence 764 11111100 000000000 11223455554432 3455999999997
No 244
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.52 E-value=3.7e-14 Score=103.89 Aligned_cols=105 Identities=12% Similarity=0.156 Sum_probs=79.9
Q ss_pred cEEEEEcccCCCCCeEEEEEEec-C-Ccee---eeEEEEEEeccceEec--CcceEEecCCcEEEEEEEeeCCCCCcEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVST-E-PKIS---IGYKLNVVISKAKIIG--NSELYIKSGSDINLTCVVLETPDPPSFIY 107 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~-~-~~~~---~~~~l~v~~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~~~~~ 107 (207)
...|.|..+..+|.|.|+|.+.+ . +... ..+.|.|..+|..... +....+..|+.+.|.|.+.+.|.| .+.
T Consensus 141 ~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p--~i~ 218 (265)
T 2oz4_A 141 RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP--ELK 218 (265)
T ss_dssp EECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCC--EEE
T ss_pred cEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCC--eEE
Confidence 45688999999999999999974 3 3333 6678888887765443 446678899999999999999888 899
Q ss_pred EEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 108 WYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 108 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
|++++..+... . .+ ..++.+|+|.|+|.|.|..+
T Consensus 219 W~~~~~~~~~~--------------g-~~--~~v~~~d~G~Y~C~a~N~~G 252 (265)
T 2oz4_A 219 CLKDGTFPLPI--------------G-ES--VTVTRDLEGTYLCRARSTQG 252 (265)
T ss_dssp EEETTTEECCT--------------T-SC--EECCGGGCEEEEEEEEETTE
T ss_pred EEECCcccCCC--------------C-cE--EEeehhhCeEEEEEEECCCC
Confidence 99988722111 1 11 23778999999999999843
No 245
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.52 E-value=1.7e-14 Score=109.73 Aligned_cols=127 Identities=15% Similarity=0.161 Sum_probs=74.2
Q ss_pred EEEEcccCCCCCeEEEEEEecCCc-eeeeEEEE------------------------EEeccceEecCcceEEecCCcEE
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPK-ISIGYKLN------------------------VVISKAKIIGNSELYIKSGSDIN 91 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~------------------------v~~~~~~~~~~~~~~~~~g~~~~ 91 (207)
.|.|.+++.+| |.|+|.+.|... ......+. +..+|.+...+.......|..+.
T Consensus 183 ~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~ 261 (344)
T 1za6_B 183 VVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVS 261 (344)
T ss_dssp EEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCCEEEEECCCGGGGGSSSEE
T ss_pred EEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEE
Confidence 79999998888 999999987432 22222111 11233332222221123466799
Q ss_pred EEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC-CCCeEEEE
Q psy3475 92 LTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS-DGASVVVH 164 (207)
Q Consensus 92 l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~-~~~~~~~~ 164 (207)
|.|.+.+.+++...+.|+++|..+.......+....++ ....+.|.+.....+|.|.|+|.|.|. ....+...
T Consensus 262 L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~~~~~~~ 336 (344)
T 1za6_B 262 LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQK 336 (344)
T ss_dssp EEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTSTTSEEEE
T ss_pred EEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCCCCeeEE
Confidence 99999996544448999999877643211111101000 012245667666667899999999997 33344333
No 246
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.50 E-value=2.8e-13 Score=86.69 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=70.9
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+....+ +.... ......|.|.++..+|+|.|+|
T Consensus 7 pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p--~i~W~k~~~~~~~~~~--~~~~~--~~~~~~L~I~~v~~~D~G~Y~C 80 (114)
T 2cqv_A 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPI--TCTWMKFRKQIQESEH--MKVEN--SENGSKLTILAARQEHCGCYTL 80 (114)
T ss_dssp CCEESCCCCSEEEETTCCEEEEEEEESSSSC--EEEEEESSSBCCCSSS--EEEEE--CSSEEEEEETTCCTTTCEEEEE
T ss_pred CCEEEeCCCCeEEeCCCeEEEEEEEEcCCCC--EEEEEECCEECcCCCC--EEEEE--cCCEEEEEECCCChhcCEEEEE
Confidence 3444455677888999999999999998887 8999999987765433 33322 2246789999999999999999
Q ss_pred EeecC---CCCeEEEEEecCCcc
Q psy3475 152 APSSS---DGASVVVHVLNGKKF 171 (207)
Q Consensus 152 ~~~n~---~~~~~~~~v~~~~~~ 171 (207)
.+.|. ....+.+.|...+.+
T Consensus 81 ~a~N~~g~~~~~~~l~V~~~p~~ 103 (114)
T 2cqv_A 81 LVENKLGSRQAQVNLTVVDKPDP 103 (114)
T ss_dssp EEECSSCEEECCEEEEEECSCSC
T ss_pred EEEECCCcEEEEEEEEEECCCCC
Confidence 99998 334567777755544
No 247
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-13 Score=84.95 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=64.2
Q ss_pred eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEE
Q psy3475 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 150 (207)
.+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+........... ......|.|.++..+|+|.|+
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p--~v~W~~~g~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~ 78 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAP--DVSWYLNGRTVQSDDLHKMIVS---EKGLHSLIFEVVRASDAGAYA 78 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEEESCC--EEEEEETTEEECCCSSSCEEEE---TTTEEEEEESSCCGGGCEEEE
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCC--EEEEEECCEECcCCCcEEEEEc---CCCeEEEEECCCCcccCEEEE
Confidence 34555555677888999999999999998888 8999999998876544333222 223468999999999999999
Q ss_pred EEeecCC
Q psy3475 151 CAPSSSD 157 (207)
Q Consensus 151 C~~~n~~ 157 (207)
|.+.|..
T Consensus 79 C~a~n~~ 85 (100)
T 2kdg_A 79 CVAKNRA 85 (100)
T ss_dssp EEEEETT
T ss_pred EEEEcCC
Confidence 9999983
No 248
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.49 E-value=1.2e-14 Score=103.33 Aligned_cols=122 Identities=11% Similarity=0.144 Sum_probs=75.0
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCce-eeeEEEE---EEeccceEe-cCcceEEecCCcEEEEEEEeeCCCCCcEEEEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPKI-SIGYKLN---VVISKAKII-GNSELYIKSGSDINLTCVVLETPDPPSFIYWY 109 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~---v~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~ 109 (207)
...|.|.+++.+|+|.|+|.+.+.... .....+. +..+|.+.. .+....+..|+.+.|.|.+.+.+++...+.|+
T Consensus 65 ~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~ 144 (214)
T 1ow0_A 65 SSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWL 144 (214)
T ss_dssp EEECTTTHHHHHHTCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEE
T ss_pred EEEEEEeHHHcCCCCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEE
Confidence 347999999999999999999874321 1222322 233444322 22223345788899999999975444489999
Q ss_pred eCCEEEEecCCCceEEEEe---c---ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 110 RGANVVNYSQRGGISVVTE---K---QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~---~---~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
++|..+............. . ....+.|.+.....++.|.|+|.|.|.
T Consensus 145 k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~ 197 (214)
T 1ow0_A 145 QGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHE 197 (214)
T ss_dssp ETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECT
T ss_pred ECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECC
Confidence 9998875431100001111 1 111234555554445689999999998
No 249
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.48 E-value=7.4e-13 Score=82.37 Aligned_cols=82 Identities=22% Similarity=0.294 Sum_probs=63.9
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+....+ ...... ......|.|.++..+|+|.|+|
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~k~g~~~~~~~~--~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C 79 (99)
T 1g1c_A 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDP--ECEWYKNGVKIERSDR--IYWYWP-EDNVCELVIRDVTGEDSASIMV 79 (99)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCC--EEEEEETTEECCCCSS--EEEEEE-ETTEEEEEECSCCGGGCEEEEE
T ss_pred CCceEecCcceEEcCCCcEEEEEEEEEeCCC--EEEEEECCEECCCCCC--EEEEEc-CCCEEEEEECCCCcCCCEEEEE
Confidence 4555566777888999999999999998888 8999999998865543 222111 1245689999999999999999
Q ss_pred EeecCCC
Q psy3475 152 APSSSDG 158 (207)
Q Consensus 152 ~~~n~~~ 158 (207)
.+.|..+
T Consensus 80 ~a~N~~g 86 (99)
T 1g1c_A 80 KAINIAG 86 (99)
T ss_dssp EEEETTE
T ss_pred EEEECCC
Confidence 9999833
No 250
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.47 E-value=7.7e-14 Score=109.96 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=68.5
Q ss_pred EEEcccCCCCCeEEEEEEecCCc-eeeeEEEE----EEeccceEecC-cceEEecCCcEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 38 LKIASSQLRDSGTYECQVSTEPK-ISIGYKLN----VVISKAKIIGN-SELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 38 L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~----v~~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
|.|.....+|+|.|+|.+.|.+. ......+. +..+|.+...+ ....+..|+ +.|.|.+.+.+++...+.|+++
T Consensus 316 l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~ 394 (457)
T 1hzh_H 316 LTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESN 394 (457)
T ss_dssp ECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEET
T ss_pred EEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEEC
Confidence 33333333449999999996432 22222232 23445443333 222333455 9999999997655558999999
Q ss_pred CEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 112 ANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|..+............++ ....+.|.+.....+|.|.|+|.|.|.
T Consensus 395 g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~ 440 (457)
T 1hzh_H 395 GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE 440 (457)
T ss_dssp TEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred CEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEEC
Confidence 988753221111111110 012245666666668899999999998
No 251
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.47 E-value=3.6e-13 Score=84.48 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=65.3
Q ss_pred eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEE
Q psy3475 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 150 (207)
.+|.+...+....+..|+.+.|.|.+.+.|.| .+.|++++..+....+ +.... ......|.|.++..+|+|.|+
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~i~W~k~~~~~~~~~~--~~~~~--~~~~~~L~i~~~~~~D~G~Y~ 80 (103)
T 3qp3_A 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTA--EVKWYHNGVELQESSK--IHYTN--TSGVLTLEILDCHTDDSGTYR 80 (103)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCC--EEEEEETTEECCCCSS--EEEEE--ETTEEEEEECSCCGGGCEEEE
T ss_pred CCCEEEeCCcceEEeCCCeEEEEEEEEecCCC--EEEEEECCEECCCCCC--EEEEE--CCCEEEEEEcCCCcccCEEEE
Confidence 45666666777888999999999999999888 8999999998866543 33322 124568999999999999999
Q ss_pred EEeecCCC
Q psy3475 151 CAPSSSDG 158 (207)
Q Consensus 151 C~~~n~~~ 158 (207)
|.+.|..+
T Consensus 81 C~a~N~~G 88 (103)
T 3qp3_A 81 AVCTNYKG 88 (103)
T ss_dssp EEEEETTE
T ss_pred EEEEeCCC
Confidence 99999833
No 252
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.46 E-value=7.6e-13 Score=97.90 Aligned_cols=115 Identities=14% Similarity=0.245 Sum_probs=68.8
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEe--ccceEec-Ccc---eEEecCCcEEEEEEEeeCCCCCcEE
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVI--SKAKIIG-NSE---LYIKSGSDINLTCVVLETPDPPSFI 106 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~--~~~~~~~-~~~---~~~~~g~~~~l~C~~~~~~~~~~~~ 106 (207)
..+|.|.+++.+|+|.|+|.+.+... ......+.|.+ +...... ... ..+..|+.+.|.|.+. .|.+ .+
T Consensus 50 ~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~--~v 126 (289)
T 3mjg_X 50 SSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQL--VV 126 (289)
T ss_dssp EEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTS--CE
T ss_pred eEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCc--eE
Confidence 35899999999999999999987432 22333444433 3221111 112 5678899999999998 5666 67
Q ss_pred EEEeCC--EEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC----CCCeEEEEEec
Q psy3475 107 YWYRGA--NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS----DGASVVVHVLN 167 (207)
Q Consensus 107 ~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~----~~~~~~~~v~~ 167 (207)
.|++.+ ..+..... .....+ ...|+|.|+|.+.|. .+....+.+..
T Consensus 127 ~w~~~~~~~~~~~~~~----------~~~~~~-----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~ 178 (289)
T 3mjg_X 127 TLHEKKGDVALPVPYD----------HQRGFS-----GIFEDRSYICKTTIGDREVDSDAYYVYRLQ 178 (289)
T ss_dssp EEEESSCCSCCCCCEE----------TTTEEE-----ECCCSSEEEEEEEETTEEEECCCEEEEECC
T ss_pred EEEeCCCCCccceeec----------CCcCee-----eeccCcEEEEEEEeCCceeeeeeEEEEecC
Confidence 777643 33221100 001111 357999999999976 23334555554
No 253
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.6e-13 Score=82.96 Aligned_cols=89 Identities=28% Similarity=0.441 Sum_probs=67.4
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
+.+...+....+..|+.+.|.|.+ .|.+ .+.|+++|..+..+.+ +....+ .....|.|.++..+|+|.|+|.
T Consensus 8 ~~~~~~~~~~~v~~G~~v~l~C~v--~p~p--~v~W~k~g~~l~~~~r--~~i~~~--~~~~~L~I~~v~~~D~G~Y~C~ 79 (100)
T 2yuz_A 8 LKILTPLTDQTVNLGKEICLKCEI--SENI--PGKWTKNGLPVQESDR--LKVVQK--GRIHKLVIANALTEDEGDYVFA 79 (100)
T ss_dssp CCCSBCCCCEEEETTSCCCEEEEC--SSCC--CEEEEETTEECCCCSS--EEEEEC--SSEEEEEESSCCGGGCSEEEEE
T ss_pred CEEeccCCceEEcCCCCEEEEEEe--CCCC--eEEEEECCEECCCCCc--EEEEEe--CCEEEEEECCCChhhCEEEEEE
Confidence 344455677888999999999999 6666 7999999998876544 333332 2456899999999999999999
Q ss_pred eecC-CCCeEEEEEecCC
Q psy3475 153 PSSS-DGASVVVHVLNGK 169 (207)
Q Consensus 153 ~~n~-~~~~~~~~v~~~~ 169 (207)
+.|. ......|.|..+|
T Consensus 80 a~N~~~~~~a~L~V~~~P 97 (100)
T 2yuz_A 80 PDAYNVTLPAKVHVISGP 97 (100)
T ss_dssp ESSSCCCEEEEEEEECCS
T ss_pred EcCCCeeEEEEEEEeCCC
Confidence 9998 3455666666443
No 254
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.45 E-value=1.7e-12 Score=80.65 Aligned_cols=81 Identities=23% Similarity=0.371 Sum_probs=63.0
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ++.... ......|.|.+++.+|+|.|+|
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~k~~~~~~~~~~-~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C 79 (99)
T 1u2h_A 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKP--VVSWLRNRQPVRPDQR-RFAEEA--EGGLCRLRILAAERGDAGFYTC 79 (99)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEESCC--EEEEEETTEECCCBTT-EEEEEC--GGGEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEEcCCceEecCCCEEEEEEEEEEcCCC--EEEEEECCEECCCCCC-EEEEEC--CCCEEEEEEccCCcCCCEEEEE
Confidence 4555556777788999999999999998888 8999999988765433 222221 2234589999999999999999
Q ss_pred EeecCC
Q psy3475 152 APSSSD 157 (207)
Q Consensus 152 ~~~n~~ 157 (207)
.+.|..
T Consensus 80 ~a~N~~ 85 (99)
T 1u2h_A 80 KAVNEY 85 (99)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999984
No 255
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.43 E-value=1.7e-14 Score=113.05 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=76.0
Q ss_pred EEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEe----------c--cceEecCcceE--EecCCcEEEEEEEeeCCC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVI----------S--KAKIIGNSELY--IKSGSDINLTCVVLETPD 101 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~----------~--~~~~~~~~~~~--~~~g~~~~l~C~~~~~~~ 101 (207)
.|.|.+++.+| |.|+|.+.|.. .......+.+.. + |.+...+.... +..|+.+.|.|.+.+.++
T Consensus 181 ~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p 259 (434)
T 1igy_B 181 SVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISK 259 (434)
T ss_dssp EEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCS
T ss_pred EEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEecccc
Confidence 69999999999 99999999743 222223332210 0 22222222222 678999999999998742
Q ss_pred --CCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 102 --PPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 102 --~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+...+.|++++..+............++ ....+.|.|..+..+|.|.|+|.|.|..+
T Consensus 260 ~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 319 (434)
T 1igy_B 260 DDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAF 319 (434)
T ss_dssp SCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred CCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCC
Confidence 2337899998876543211110000000 11245789999999999999999999833
No 256
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.43 E-value=1.4e-12 Score=83.77 Aligned_cols=95 Identities=21% Similarity=0.401 Sum_probs=69.7
Q ss_pred eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEE
Q psy3475 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 150 (207)
.+|.++..+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.... .++....+. .....|.|.+++.+|+|.|+
T Consensus 14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p--~v~W~k~~~~~~~~~-~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~ 89 (116)
T 2kkq_A 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPP--KLFWKRNNEMVQFNT-DRISLYQDN-TGRVTLLIKDVNKKDAGWYT 89 (116)
T ss_dssp BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCC--EEEEEETTEECCCCB-TTEEEEECT-TCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCC--EEEEEECCEECcCCC-CeEEEEeCC-CCeEEEEECCCCcccCEEEE
Confidence 34566666778889999999999999998888 899999998876432 233333221 23448999999999999999
Q ss_pred EEeecCCC---CeEEEEEecCC
Q psy3475 151 CAPSSSDG---ASVVVHVLNGK 169 (207)
Q Consensus 151 C~~~n~~~---~~~~~~v~~~~ 169 (207)
|.+.|..+ ..+.|.|...+
T Consensus 90 C~a~N~~G~~~~~~~l~V~~~p 111 (116)
T 2kkq_A 90 VSAVNEAGVTTCNTRLDVTARP 111 (116)
T ss_dssp EEEEETTEEEEEEEEEEEECCS
T ss_pred EEEEcCCCeEEEEEEEEEeCCC
Confidence 99999833 33455555433
No 257
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.43 E-value=1.7e-12 Score=80.76 Aligned_cols=82 Identities=20% Similarity=0.361 Sum_probs=63.9
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
|.+...+....+..|+.+.|.|.+.+.|.| .+.|++++..+......++..... .....|.|.++..+|+|.|+|.
T Consensus 6 P~i~~~~~~~~~~~G~~~~l~C~~~g~p~p--~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~ 81 (100)
T 3irg_A 6 PKIEALPSDISIDEGKVLTVACAFTGEPTP--EVTWSCGGRKIHSQEQGRFHIENT--DDLTTLIIMDVQKQDGGLYTLS 81 (100)
T ss_dssp EEECCCCSEEEEETTSEEEEEEEEEEESCC--EEEEEETTEECCTTGGGTEEEEEC--SSEEEEEESSCCGGGCEEEEEE
T ss_pred CeeecCCCcEEEcCCCcEEEEEEEEEcCCC--ceEEEECCEEeecCCCCEEEEEec--CCEEEEEEeecCcccCEEEEEE
Confidence 444444667788899999999999998888 899999998876444444444432 2457899999999999999999
Q ss_pred eecCCC
Q psy3475 153 PSSSDG 158 (207)
Q Consensus 153 ~~n~~~ 158 (207)
+.|..+
T Consensus 82 a~n~~g 87 (100)
T 3irg_A 82 LGNEFG 87 (100)
T ss_dssp EEETTE
T ss_pred EEeCCC
Confidence 999843
No 258
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.41 E-value=3e-12 Score=80.70 Aligned_cols=81 Identities=25% Similarity=0.500 Sum_probs=63.7
Q ss_pred eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEE
Q psy3475 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 150 (207)
.+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+....+ +.... ......|.|.++..+|+|.|+
T Consensus 12 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~--~~~~~--~~~~~~L~i~~~~~~D~G~Y~ 85 (107)
T 3irg_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPP--VVVWEKGGQQLAASER--LSFPA--DGAEHGLLLTAALPTDAGVYV 85 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCC--EEEEEETTEECCCCSS--EECCE--ETTEEEEEESSCCGGGCEEEE
T ss_pred CCCeeEcCCccEEEeCCCeEEEEEEEeecCCC--EEEEEECCeECCCCCc--EEEEe--CCCEEEEEEccCCHHhCEEEE
Confidence 45666666777888999999999999998888 8999999988765433 22221 123458999999999999999
Q ss_pred EEeecCC
Q psy3475 151 CAPSSSD 157 (207)
Q Consensus 151 C~~~n~~ 157 (207)
|.+.|..
T Consensus 86 C~a~n~~ 92 (107)
T 3irg_B 86 CRARNAA 92 (107)
T ss_dssp EEEEETT
T ss_pred EEEEcCC
Confidence 9999983
No 259
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.41 E-value=2.4e-13 Score=98.41 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=73.5
Q ss_pred EEEEcccCCCCCeEEEEEEecCCc---eeeeEEE--EEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPK---ISIGYKL--NVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l--~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
.|.|.....+|.|.|+|.+.+... ....+.+ .+..+|.+...+.......|+.+.|.|.+.+..++...+.|+++
T Consensus 90 ~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~ 169 (240)
T 4acp_A 90 VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESN 169 (240)
T ss_dssp EEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred EEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEEC
Confidence 788888888899999999987432 2222221 12334444333332222348899999999996555458999999
Q ss_pred CEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 112 ANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|..+............++ ....+.|.+......+.|.|+|.|.+.
T Consensus 170 g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~ 215 (240)
T 4acp_A 170 GQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE 215 (240)
T ss_dssp TEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred CEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEEC
Confidence 987532111001000011 112356777666667889999999997
No 260
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.41 E-value=2.9e-12 Score=78.91 Aligned_cols=78 Identities=10% Similarity=0.120 Sum_probs=61.1
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
++.+...+.+..+..|+.+.|.|.+.+ +.+ .+.|+++|..+..+.+ +.+..+ .....|.|.+++.+|+|.|+|
T Consensus 5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~--~v~W~k~g~~i~~~~~--~~i~~~--g~~~~L~I~~v~~~D~G~Y~C 77 (93)
T 1waa_A 5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDV--HGQWKLKGQPLAASPD--CEIIED--GKKHILILHNCQLGMTGEVSF 77 (93)
T ss_dssp CCCEEECCCCEEEETTSCEEEEEEESS-SSC--CCEEEETTEECCCBTT--EEEEEE--TTEEEEEECSCCGGGCEEEEE
T ss_pred CcEeeccCcceEEeCCCCEEEEEEECC-CCC--eEEEEECCEECcCCCC--EEEEEE--CCEEEEEECCCChhhCEEEEE
Confidence 344556677888999999999999976 445 6899999998876544 333332 245689999999999999999
Q ss_pred EeecC
Q psy3475 152 APSSS 156 (207)
Q Consensus 152 ~~~n~ 156 (207)
.+.|.
T Consensus 78 ~a~n~ 82 (93)
T 1waa_A 78 QAANT 82 (93)
T ss_dssp EETTE
T ss_pred EECCC
Confidence 99985
No 261
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.41 E-value=1.7e-12 Score=81.47 Aligned_cols=90 Identities=17% Similarity=0.269 Sum_probs=66.8
Q ss_pred eEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEee
Q psy3475 75 KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 75 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
+...+....+..|+.+.|.|.+.+ +.+ .+.|++++..+......++....+ .....|.|.+++.+|+|.|+|.+.
T Consensus 10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~--~v~W~k~g~~l~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~ 84 (103)
T 1x44_A 10 VTKQLEDTTAYCGERVELECEVSE-DDA--NVKWFKNGEEIIPGPKSRYRIRVE--GKKHILIIEGATKADAAEYSVMTT 84 (103)
T ss_dssp CSBCCCCEEEETTEEEEEEEECSS-SSC--CCEEEETTEECCCSTTCSEEEEEE--TTEEEEEEEEECTTTCSEEEEEET
T ss_pred eeccCCCEEEECCCCEEEEEEecC-CCC--eEEEEECCEECCCCCceEEEEEEc--CCEEEEEECCCCcccCEEEEEEEC
Confidence 344566778889999999999976 555 789999999887655323343332 245789999999999999999999
Q ss_pred cCCCCeEEEEEecCCc
Q psy3475 155 SSDGASVVVHVLNGKK 170 (207)
Q Consensus 155 n~~~~~~~~~v~~~~~ 170 (207)
| ......+.|...+.
T Consensus 85 n-~~~~~~l~V~~~p~ 99 (103)
T 1x44_A 85 G-GQSSAKLSVDLKSG 99 (103)
T ss_dssp T-EEEEEEEEEECCCS
T ss_pred C-CcEEEEEEEeCCCC
Confidence 8 35556666665443
No 262
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.41 E-value=5.9e-12 Score=78.17 Aligned_cols=80 Identities=23% Similarity=0.330 Sum_probs=63.3
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+....+ +....+ .....|.|.++..+|+|.|+|
T Consensus 6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p--~v~W~~~g~~~~~~~~--~~~~~~--~~~~~L~i~~~~~~d~G~Y~C 79 (99)
T 3puc_A 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRP--TAIWTKDGKAITQGGK--YKLSED--KGGFFLEIHKTDTSDSGLYTC 79 (99)
T ss_dssp EEEEEECCCCEEEESSSCEEEEEEEEEESCC--EEEEEETTEECCSSSS--EEEEEE--TTEEEEEECSCCGGGCEEEEE
T ss_pred CCEEEecCccEEEeCCCcEEEEEEEEecCCC--EEEEEECCEECcCCCC--EEEEEe--CCEEEEEECCCCcccCEEEEE
Confidence 4555556777888999999999999998888 8999999988765433 333322 244689999999999999999
Q ss_pred EeecCC
Q psy3475 152 APSSSD 157 (207)
Q Consensus 152 ~~~n~~ 157 (207)
.+.|..
T Consensus 80 ~a~n~~ 85 (99)
T 3puc_A 80 TVKNSA 85 (99)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 999983
No 263
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.40 E-value=1.9e-13 Score=86.52 Aligned_cols=86 Identities=20% Similarity=0.351 Sum_probs=56.3
Q ss_pred EEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccC
Q psy3475 65 YKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144 (207)
Q Consensus 65 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 144 (207)
+.|.+..+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... .... .....|.|.++..+
T Consensus 3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~--~~~~----~~~~~L~i~~v~~~ 74 (108)
T 3kvq_A 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPP--QIMWFKDNETLVEDSG--IVLK----DGNRNLTIRRVRKE 74 (108)
T ss_dssp --------CCCBSCCCCEEEETTCCEEEECBCC----C--CEEEEESSSBCCCBTT--EEEE----TTTTEEEECSCCGG
T ss_pred eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCC--eEEEEECCeEcccCCC--eEEe----CCCcEEEEeecCcc
Confidence 44566667777767778888999999999999988877 7999999887654433 1111 13467999999999
Q ss_pred CCeEEEEEeecCCC
Q psy3475 145 DSGNYTCAPSSSDG 158 (207)
Q Consensus 145 d~g~Y~C~~~n~~~ 158 (207)
|+|.|+|.+.|..+
T Consensus 75 D~G~Y~C~a~n~~g 88 (108)
T 3kvq_A 75 DEGLYTCQACSVLG 88 (108)
T ss_dssp GCEEEEEEEC----
T ss_pred cCEEEEEEEEeCCC
Confidence 99999999999833
No 264
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.40 E-value=1.9e-12 Score=87.34 Aligned_cols=98 Identities=21% Similarity=0.337 Sum_probs=72.7
Q ss_pred EEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCC
Q psy3475 66 KLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 66 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.+.+..+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+....+ +..... ......|.|.++...|
T Consensus 35 ~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p--~v~W~k~g~~~~~~~~--~~~~~~-~~~~~~L~I~~v~~~D 109 (154)
T 1fhg_A 35 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDP--EVMWFKDDNPVKESRH--FQIDYD-EEGNCSLTISEVCGDD 109 (154)
T ss_dssp CCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCC--EEEEEETTEECCCSSS--EEEEEC-TTCEEEEEESSCCGGG
T ss_pred cccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCC--EEEEEECCEECCCCCc--EEEEEC-CCCeEEEEECCCChhc
Confidence 4445566777777777888999999999999998888 8999999988765433 322211 1234689999999999
Q ss_pred CeEEEEEeecCCCC---eEEEEEecC
Q psy3475 146 SGNYTCAPSSSDGA---SVVVHVLNG 168 (207)
Q Consensus 146 ~g~Y~C~~~n~~~~---~~~~~v~~~ 168 (207)
.|.|+|.+.|..+. ...|.|...
T Consensus 110 ~G~Y~C~a~N~~G~~~~~~~l~V~~~ 135 (154)
T 1fhg_A 110 DAKYTCKAVNSLGEATCTAELLVETM 135 (154)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CEEEEEEEEECCCeEEEEEEEEEeCc
Confidence 99999999998433 345555543
No 265
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=5.2e-12 Score=81.20 Aligned_cols=82 Identities=24% Similarity=0.447 Sum_probs=62.7
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC--
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS-- 156 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~-- 156 (207)
+....+..|+.+.|.|.+.+.|.| .+.|++++..+. ..+ +.... ......|.|.++..+|+|.|+|.+.|.
T Consensus 31 ~~~~~v~~G~~~~l~C~~~g~P~p--~i~W~k~g~~l~-~~~--~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G 103 (118)
T 2e7c_A 31 RQTYIRKVGEQLNLVVPFQGKPRP--QVVWTKGGAPLD-TSR--VHVRT--SDFDTVFFVRQAARSDSGEYELSVQIENM 103 (118)
T ss_dssp SSCEEEESSSCEEEEEEEEEESCC--EEEEEETTEECC-CSS--CEEEE--CSSEEEEEESSCCTTTCEEEEEEEECSSC
T ss_pred CCCEEEECCCEEEEEEEEccCCCC--EEEEEECCEECC-CCc--EEEEE--CCCeEEEEECCCChhcCEEEEEEEEeCCC
Confidence 456778899999999999999888 899999999885 222 22222 224567999999999999999999998
Q ss_pred -CCCeEEEEEec
Q psy3475 157 -DGASVVVHVLN 167 (207)
Q Consensus 157 -~~~~~~~~v~~ 167 (207)
....+.+.|..
T Consensus 104 ~~~~~~~l~V~~ 115 (118)
T 2e7c_A 104 KDTATIRIRVVE 115 (118)
T ss_dssp EECCEEEEEEEC
T ss_pred eEEEEEEEEEEc
Confidence 33445555553
No 266
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.5e-12 Score=79.46 Aligned_cols=87 Identities=23% Similarity=0.347 Sum_probs=64.8
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ++... ....|.|.++..+|+|.|+|
T Consensus 8 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p--~v~W~~~~~~~~~~~~-~~~~~-----~~~~L~i~~v~~~d~G~Y~C 79 (100)
T 2edj_A 8 PPIILQGPANQTLAVDGTALLKCKATGDPLP--VISWLKEGFTFPGRDP-RATIQ-----EQGTLQIKNLRISDTGTYTC 79 (100)
T ss_dssp SCEEEECCCCEEEESSSEEEECCEEECSSCC--EEEEEESSSEESSSCS-SCEEC-----TTCCEEEESCCTTTCCEEEE
T ss_pred CCEEEeCcCCEEEcCCCcEEEEEEEEEcCCC--EEEEEECCEECCCCCC-CEEEc-----CCCEEEEccCCcccCEEEEE
Confidence 4455556777788899999999999998887 8999999987763222 22211 23479999999999999999
Q ss_pred EeecCC---CCeEEEEEe
Q psy3475 152 APSSSD---GASVVVHVL 166 (207)
Q Consensus 152 ~~~n~~---~~~~~~~v~ 166 (207)
.+.|.. ...+.|.|.
T Consensus 80 ~a~n~~g~~~~~~~l~V~ 97 (100)
T 2edj_A 80 VATSSSGETSWSAVLDVT 97 (100)
T ss_dssp EEECSSCCCBCCEEEEEE
T ss_pred EEEcCCCCEEEEEEEEEe
Confidence 999983 334455554
No 267
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*
Probab=99.39 E-value=1.6e-12 Score=92.10 Aligned_cols=139 Identities=17% Similarity=0.219 Sum_probs=87.5
Q ss_pred CeeEEccCCccceeeEEEEe-----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC----Cc--eeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE----PK--ISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~----~~--~~~~~~l~v 69 (207)
|+||||.++..+...++... .++||.+..+...+.++|.|.+++.+|+|.|.|.+.+. .. ......|.|
T Consensus 35 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V 114 (210)
T 2eys_A 35 LRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTV 114 (210)
T ss_dssp EEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEESCSSTTCCEEECCCEEEEE
T ss_pred EEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEEccCCCcccceECCCEEEEE
Confidence 58999988766654443111 26899988777778899999999999999999999762 11 224457777
Q ss_pred EeccceEecCcceEEe--cCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCe
Q psy3475 70 VISKAKIIGNSELYIK--SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSG 147 (207)
Q Consensus 70 ~~~~~~~~~~~~~~~~--~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 147 (207)
...... ..+.+... ....++|.|.+.+.+++ ..+.+..++ .... .....|.+......+.|
T Consensus 115 ~~~~~~--~~P~V~~~~~~~~~~tl~Cl~~gf~P~-~~v~~~~~~---------~~~~-----t~~~~l~~~~~~~~~~~ 177 (210)
T 2eys_A 115 WPDIQN--PDPAVYQLRDSKSSDKSVCLFTDFDSQ-TNVSQSKDS---------DVYI-----TDKCVLDMRSMDFKSNS 177 (210)
T ss_dssp ECCCSS--CCCEEEEECCCSSSSCEEEEEESCCTT-CCCCCCSST---------TEEE-----CCCEEEEETTTTEEEEE
T ss_pred ECCCCC--CCCeEEecCCCCCCceEEEEcccccCC-cEeccccCc---------ceEc-----cCchhcchhcccccccc
Confidence 642110 01111111 12367899999998655 243221111 1110 12346677777788899
Q ss_pred EEEEEeecC
Q psy3475 148 NYTCAPSSS 156 (207)
Q Consensus 148 ~Y~C~~~n~ 156 (207)
.|.|.+.|.
T Consensus 178 ~~~w~~~~~ 186 (210)
T 2eys_A 178 AVAWSNKSD 186 (210)
T ss_dssp EEEEECSTT
T ss_pred hhhccCCCc
Confidence 999988886
No 268
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.4e-13 Score=85.10 Aligned_cols=94 Identities=20% Similarity=0.338 Sum_probs=68.1
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+........... ......|.|.+++.+|+|.|+|
T Consensus 9 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~~~g~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C 83 (110)
T 2dm3_A 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTP--DLSWQLDGKPVRPDSAHKMLVR---ENGVHSLIIEPVTSRDAGIYTC 83 (110)
T ss_dssp CCEEEECCCEEEEESSSCBCCEEEEECSSCC--EEECBBSSSBCCCCSSEEEEEC---TTSCEEEEESSCCGGGCSBBCE
T ss_pred CCcEEeCCCcEEEeCCCEEEEEEEEEEcCCC--EEEEEECCEECCCCCceEEEEe---cCCeEEEEEeeCCcccCEEEEE
Confidence 3455555677888899999999999998877 8999999887755433211111 2234689999999999999999
Q ss_pred EeecCCC---CeEEEEEecCCc
Q psy3475 152 APSSSDG---ASVVVHVLNGKK 170 (207)
Q Consensus 152 ~~~n~~~---~~~~~~v~~~~~ 170 (207)
.+.|..+ ..+.|.|...+.
T Consensus 84 ~a~n~~g~~~~~~~l~V~~~p~ 105 (110)
T 2dm3_A 84 IATNRAGQNSFSLELVVAAKES 105 (110)
T ss_dssp EEECSSCEEEECCEEEEECCCC
T ss_pred EEECCCCEEEEEEEEEEeCCCC
Confidence 9999833 344566654443
No 269
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=8.5e-13 Score=82.14 Aligned_cols=81 Identities=25% Similarity=0.450 Sum_probs=63.3
Q ss_pred EEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeE
Q psy3475 69 VVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGN 148 (207)
Q Consensus 69 v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 148 (207)
+..+|.+...+....+..|+.+.|.|.+.+.|.| .+.|++++..+..... . . ......|.|.++..+|+|.
T Consensus 8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~~~g~~~~~~~~---~-~---~~~~~~L~i~~v~~~D~G~ 78 (99)
T 2yr3_A 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVP--RITWLLNGQPIQYARS---T-C---EAGVAELHIQDALPEDHGT 78 (99)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEEECEEEEESCC--CCEEEESSSBCSSCCC---E-E---ETTEEEEEECSCCTTCCBC
T ss_pred cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCC--eEEEEECCEECcccce---E-e---eCCeEEEEECCCChhhCEE
Confidence 3455666666777888999999999999998888 7999999877653321 1 1 1245789999999999999
Q ss_pred EEEEeecCCC
Q psy3475 149 YTCAPSSSDG 158 (207)
Q Consensus 149 Y~C~~~n~~~ 158 (207)
|+|.+.|..+
T Consensus 79 Y~C~a~N~~g 88 (99)
T 2yr3_A 79 YTCLAENALG 88 (99)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEEECCC
Confidence 9999999844
No 270
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.35 E-value=3.7e-12 Score=76.81 Aligned_cols=79 Identities=19% Similarity=0.382 Sum_probs=59.6
Q ss_pred cceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
..+.+.+|+.+.|.|.+.+ |.| .+.|+++|..+..+.+ +....+ .....|.|.++..+|+|.|+|.|.|. ..
T Consensus 4 t~v~~~~G~~v~l~C~vs~-p~p--~v~W~k~g~~l~~~~~--~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~n~-~~ 75 (84)
T 2lu7_A 4 TRVRSTPGGDLELVVHLSG-PGG--PVRWYKDGERLASQGR--VQLEQA--GARQVLRVQGARSGDAGEYLCDAPQD-SR 75 (84)
T ss_dssp CCEEECTTSCEEEECCCSC-CST--TCEEEETTEECCCCSS--EEEEEC--SSCEEEEESSCSSTTCEEEEEECTTT-CE
T ss_pred eEEEEecCCCEEEEEEECC-CCc--EEEEEECCEEcccccc--EEEeec--CCeEEEEecCCCCcccEEEEEEECCE-EE
Confidence 3566789999999999865 767 6899999999876554 333332 24568999999999999999999775 34
Q ss_pred eEEEEEe
Q psy3475 160 SVVVHVL 166 (207)
Q Consensus 160 ~~~~~v~ 166 (207)
...|.|.
T Consensus 76 ~a~l~V~ 82 (84)
T 2lu7_A 76 IFLVSVE 82 (84)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 4445443
No 271
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=8.5e-12 Score=78.29 Aligned_cols=92 Identities=24% Similarity=0.410 Sum_probs=67.5
Q ss_pred ccceEecCcc---eEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeE
Q psy3475 72 SKAKIIGNSE---LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGN 148 (207)
Q Consensus 72 ~~~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 148 (207)
+|.++..+.. +.+..|+.+.|.|.+.+.+.+ +.|++++..+....+ +....+ .....|.|.+++.+|+|.
T Consensus 7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~---v~W~k~g~~~~~~~~--~~~~~~--~~~~~L~I~~~~~~D~G~ 79 (104)
T 2e6p_A 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP---ATWYKDGQKVEESEL--LVVKMD--GRKHRLILPEAKVQDSGE 79 (104)
T ss_dssp SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC---CEEEETTEECCCBTT--BEEEEE--TTEEEEEESSCCTTTCEE
T ss_pred CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc---cEEeeCCEECCCCCC--EEEEeC--CCEEEEEECCCChhhCEE
Confidence 3444444554 678899999999999887665 699999998866544 222222 245689999999999999
Q ss_pred EEEEeecCCCCeEEEEEecCCcc
Q psy3475 149 YTCAPSSSDGASVVVHVLNGKKF 171 (207)
Q Consensus 149 Y~C~~~n~~~~~~~~~v~~~~~~ 171 (207)
|+|.+.|. .....+.|...+.+
T Consensus 80 Y~C~a~n~-~~~~~l~V~~~P~p 101 (104)
T 2e6p_A 80 FECRTEGV-SAFFGVTVQDPSGP 101 (104)
T ss_dssp EEEECSSC-CCCEEEEEECCCCS
T ss_pred EEEEECCc-eEEEEEEEcCCCCC
Confidence 99999997 44666777655443
No 272
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=3.7e-12 Score=79.83 Aligned_cols=91 Identities=25% Similarity=0.441 Sum_probs=67.2
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
|+.+...+....+..|+.+.|.|.+.+ +.+ .+.|++++..+....+ +....+ .....|.|.++..+|+|.|+|
T Consensus 8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~--~v~W~k~g~~~~~~~~--~~~~~~--~~~~~L~I~~v~~~D~G~Y~C 80 (103)
T 2edf_A 8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGT--PVHWLKDRKAIRKSQK--YDVVCE--GTMAMLVIRGASLKDAGEYTC 80 (103)
T ss_dssp CCCEEECCCCEEECTTSCEEECCEESS-SSC--CCCEEESSCBCCCSSS--EEEEEE--TTEEEEEESSCCTTTCSEEEE
T ss_pred CcEEEecCCccEEcCCCCEEEEEEEeC-CCC--cEEEEECCEEccCCCC--EEEEEC--CCEEEEEECCCCcccCEEEEE
Confidence 344455567788899999999999986 556 6899999987765443 333332 235689999999999999999
Q ss_pred EeecCCCCeEEEEEecCCc
Q psy3475 152 APSSSDGASVVVHVLNGKK 170 (207)
Q Consensus 152 ~~~n~~~~~~~~~v~~~~~ 170 (207)
.+.| ......|.|...+.
T Consensus 81 ~a~n-~~~~~~l~V~~~p~ 98 (103)
T 2edf_A 81 EVEA-SKSTASLHVEEKAS 98 (103)
T ss_dssp ECSS-CEEEEEEEECCCSS
T ss_pred EEcc-CCcEEEEEEeCCCC
Confidence 9999 35556666665443
No 273
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.34 E-value=1.3e-12 Score=80.44 Aligned_cols=79 Identities=23% Similarity=0.363 Sum_probs=60.3
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC--EEEEecCCCceEEEEecccceEEEEEEecccCCCeEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA--NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNY 149 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y 149 (207)
+|.+...+....+..|+.+.|.|.+.+.|.| .+.|++++ ..+.... .+. . ......|.|.++..+|+|.|
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p--~i~W~k~~~~~~~~~~~--~~~--~--~~~~~~L~i~~~~~~D~G~Y 73 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDP--TATWTVGDSGAALAPEL--LVD--A--KSSTTSIFFPSAKRADSGNY 73 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSC--EEEEECSTTTCBCSTTS--EEE--E--ETTEEEEECTTBCGGGCEEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCC--EEEEEECCCCcccCCcE--EEE--e--cCCEEEEEECCCChhcCEEE
Confidence 3444444667778899999999999999888 89999988 6654321 111 1 12457899999999999999
Q ss_pred EEEeecCCC
Q psy3475 150 TCAPSSSDG 158 (207)
Q Consensus 150 ~C~~~n~~~ 158 (207)
+|.|.|..+
T Consensus 74 ~C~a~N~~G 82 (93)
T 1wit_A 74 KLKVKNELG 82 (93)
T ss_dssp EEEEEETTE
T ss_pred EEEEEcCCC
Confidence 999999844
No 274
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A
Probab=99.34 E-value=3.6e-12 Score=89.28 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=76.9
Q ss_pred CeeEEccCCccceeeEEEEe-----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC--ceeeeEEEEEEec-
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVIS- 72 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~- 72 (207)
+.||||.++..+...++... ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.... .......|.|...
T Consensus 32 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~ 111 (200)
T 3rgv_A 32 LFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVVPNI 111 (200)
T ss_dssp EEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTCEEEEEEEESSSCCCCCCCEEEEEECCC
T ss_pred EEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcCccCCCEEEEeccCcccccCcCEEEEEeCCC
Confidence 58999988776665444332 247898877677788999999999999999999986421 2334457777652
Q ss_pred --c-ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEe
Q psy3475 73 --K-AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNY 117 (207)
Q Consensus 73 --~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~ 117 (207)
+ +.+..+. .....++|.|.+.+..+ .+.+.|.++|..+..
T Consensus 112 ~~~~P~V~~~~----~~~~~~tl~Cl~~gf~P-~i~v~~~~~g~~~~~ 154 (200)
T 3rgv_A 112 QNPDPAVYQLR----DSKSSDKSVCLFTDFDS-QTNVSQSKDSDVYIT 154 (200)
T ss_dssp SSCCCEEEEEE----ESSSSSCEEEEEESCCT-TCCCCCCSSTTCEEC
T ss_pred CCCCCeEEEcc----CCCCCceEEEEcccccC-CeEeEeccCCcEEee
Confidence 1 1111111 11234689999999876 679999998876543
No 275
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G
Probab=99.34 E-value=4.5e-12 Score=90.25 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=76.0
Q ss_pred CeeEEccCCccceeeEEEEeC-----C-CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC---Cc--eeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTN-----D-LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE---PK--ISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~-----~-~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~~--~~~~~~l~v 69 (207)
+.||||.++..+...++.... . +||.+..+...+.++|+|.+++.+|+|.|.|.+... .. ......|.|
T Consensus 41 v~WyrQ~pg~~~~~Li~~~~~~~~~~~~~Rfs~s~~~~~~~~sLtI~~lq~~DSG~YyCa~~~~~~~~~~~fG~GT~LtV 120 (226)
T 3tjh_C 41 LFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAKLTV 120 (226)
T ss_dssp EEEEEECTTSCCEEEEEECSSSSEEECGGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEESSCSSSEEECCCEEEEE
T ss_pred EEEEEECCCCCcEEEEEecCCCccccccCcEEEEEcCCCCEEEEEEecCCcccCCCEEEEEEecCCccccccCCCeEEEE
Confidence 589999887766655544322 3 899987777778999999999999999999998742 11 233457777
Q ss_pred Eec---c-ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEe
Q psy3475 70 VIS---K-AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNY 117 (207)
Q Consensus 70 ~~~---~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~ 117 (207)
... + +.+..+. .....++|.|.+.+..+ .+.+.|.++|..+..
T Consensus 121 ~~~~~~~~P~V~~~~----~~~~~~tl~Cl~~~f~P-~i~v~~~~~~~~~~~ 167 (226)
T 3tjh_C 121 SPNIQNPDPAVYQLR----DSKSSDKSVCLFTDFDS-QTNVSQSKDSDVYIT 167 (226)
T ss_dssp ECCCSSCCCEEEEEE----ECC---CEEEEEESCCT-TCCCCCCSCTTEEEC
T ss_pred eCCCCCCCCEEEEcc----cCCCCeEEEEEcccccC-CcEEEeeccCceeec
Confidence 642 1 1111111 11134789999999876 668999998876643
No 276
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.34 E-value=1.5e-13 Score=89.03 Aligned_cols=97 Identities=25% Similarity=0.278 Sum_probs=71.2
Q ss_pred eeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEe--cccceEEEEEEe
Q psy3475 63 IGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTE--KQTRTSRLVISK 140 (207)
Q Consensus 63 ~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~ 140 (207)
..+.|.|..+|.+.. +....+..|+.+.|.|.+.+.|.|. .+.|++++..+......++..... .....+.|.|.+
T Consensus 5 ~~~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~-~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~ 82 (122)
T 2cry_A 5 SSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPD-RIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISN 82 (122)
T ss_dssp CCCCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCS-EEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCc-EeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcC
Confidence 445677777787766 6677788999999999999998773 499999998876432233333211 111256899999
Q ss_pred cccCCC-eEEEEEeecCCCCeE
Q psy3475 141 AVTSDS-GNYTCAPSSSDGASV 161 (207)
Q Consensus 141 ~~~~d~-g~Y~C~~~n~~~~~~ 161 (207)
+..+|. |.|+|.|.|..+...
T Consensus 83 v~~~D~~G~Y~C~a~N~~G~~~ 104 (122)
T 2cry_A 83 IVRADFQTIYNCTAWNSFGSDT 104 (122)
T ss_dssp CCHHHHHSCEEEEEECSSCEEE
T ss_pred CChhhCCceEEEEEECCCCeEE
Confidence 999998 999999999955443
No 277
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.6e-12 Score=81.50 Aligned_cols=92 Identities=21% Similarity=0.360 Sum_probs=66.2
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ++..... ......|.|.+++.+|+|.|+|
T Consensus 8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~k~g~~~~~~~~-~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C 83 (110)
T 2dm2_A 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKP--KIYWFKDGKQISPKSD-HYTIQRD-LDGTCSLHTTASTLDDDGNYTI 83 (110)
T ss_dssp CCCBSSCCCCEEEETTCCEEEEEEBCCSSCC--EEEEECSSCBCCTTCS-SEEEEEC-TTCEEEEEESSCCTTTCSCCEE
T ss_pred CCEEEecCcCeEEeCCCeEEEEEEEEecCCC--EEEEEECCEECCCCCC-eEEEEEC-CCcEEEEEECCCChhhCEEEEE
Confidence 3444455667788999999999999998877 8999999887754322 2333321 1233579999999999999999
Q ss_pred EeecCCCC---eEEEEEec
Q psy3475 152 APSSSDGA---SVVVHVLN 167 (207)
Q Consensus 152 ~~~n~~~~---~~~~~v~~ 167 (207)
.+.|..+. ...|.|..
T Consensus 84 ~a~N~~g~~~~~~~l~V~~ 102 (110)
T 2dm2_A 84 MAANPQGRISCTGRLMVQA 102 (110)
T ss_dssp EEECTTCCEEECCCEEEEC
T ss_pred EEEECCCeEEEEEEEEEEC
Confidence 99998433 23455544
No 278
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=81.63 Aligned_cols=88 Identities=13% Similarity=0.184 Sum_probs=64.3
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCC--ceEEEEecccceEEEEEEecccCCCeEEE
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRG--GISVVTEKQTRTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 150 (207)
+.+...+....+..|+.+.|.|.+.+.+ + .+.|++++..+...... ++....+ .....|.|.++..+|+|.|+
T Consensus 9 ~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~--~v~W~k~g~~i~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~ 83 (101)
T 2edk_A 9 VLIVTPLEDQQVFVGDRVEMAVEVSEEG-A--QVMWMKNGVELTREDSFKARYRFKKD--GKRHILIFSDVVQEDRGRYQ 83 (101)
T ss_dssp CCEEECCCCEEEESSCCCBCCEEESCSS-C--CCEEEESSCBCCCSCCSSCCCEEEEC--SSEEEEECSSCCGGGCSBEE
T ss_pred CEEEecCCceEEcCCCCEEEEEEEeCCC-C--EEEEEECCEECCCCCCcceeEEEEEC--CCEEEEEECCCChhhCEEEE
Confidence 3444556678889999999999999876 6 78999999887665432 3343332 24568999999999999999
Q ss_pred EEeecCCCCeEEEEEe
Q psy3475 151 CAPSSSDGASVVVHVL 166 (207)
Q Consensus 151 C~~~n~~~~~~~~~v~ 166 (207)
|.+.|. .....+.|.
T Consensus 84 C~a~n~-~~~~~l~V~ 98 (101)
T 2edk_A 84 VITNGG-QCEAELIVE 98 (101)
T ss_dssp EECSSC-EECCBEEEE
T ss_pred EEEcCC-cEEEEEEEe
Confidence 999984 223334443
No 279
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.33 E-value=1e-11 Score=75.95 Aligned_cols=68 Identities=16% Similarity=0.369 Sum_probs=56.4
Q ss_pred EecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeec
Q psy3475 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155 (207)
Q Consensus 76 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n 155 (207)
...|....+..|+.+.|.|.+.+.|.| .+.|++++..+.... ...|.|.++..+|+|.|+|.+.|
T Consensus 7 ~~~p~~~~v~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~a~n 71 (91)
T 3bfo_A 7 CVEPTSQKLMPGSTLVLQCVAVGSPIP--HYQWFKNELPLTHET-------------KKLYMVPYVDLEHQGTYWCHVYN 71 (91)
T ss_dssp EECCCCEEECTTSCEEEECEEECSSCC--EEEEEETTEECTTCC-------------SSEEEESSCCGGGCEEEEEEEEC
T ss_pred EECCCccEecCCCcEEEEEEeccCCCC--EEEEEcCCeeCCcCC-------------CCeEEECCCCHHhCEEEEEEEEc
Confidence 344566778899999999999998888 899999998764332 34799999999999999999999
Q ss_pred CCC
Q psy3475 156 SDG 158 (207)
Q Consensus 156 ~~~ 158 (207)
..+
T Consensus 72 ~~g 74 (91)
T 3bfo_A 72 DRD 74 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 843
No 280
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A
Probab=99.32 E-value=8.7e-12 Score=87.68 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=82.2
Q ss_pred CeeEEccCCccceeeEEEEeC----CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec---CC--ceeeeEEEEEEe
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST---EP--KISIGYKLNVVI 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~---~~--~~~~~~~l~v~~ 71 (207)
++||||.++..+...++.... ++||.+..+...+.++|.|.+++.+|+|.|.|.+.+ .. .......|.|..
T Consensus 31 v~Wyrq~~g~~~~~l~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~fg~gt~L~V~~ 110 (200)
T 2nw2_A 31 LFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQASGGSYIPTFGRGTSLIVHP 110 (200)
T ss_dssp EEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC---CCCCCEECCCEEEEEEC
T ss_pred EEEEEeCCCCCcEEEEEEcCCCcccCCceEEEecCCCCEEEEEECccCcccCCcEEEEEEcCCcceeeeeCCCEEEEEec
Confidence 589999887666554433211 688998777777889999999999999999999875 11 122445777764
Q ss_pred ccceEecCcceEE--ecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEE
Q psy3475 72 SKAKIIGNSELYI--KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNY 149 (207)
Q Consensus 72 ~~~~~~~~~~~~~--~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y 149 (207)
.... ..+.+.. .....++|.|.+.+..+. ..+. ++. ...... .....|.+......+.+.+
T Consensus 111 ~~~~--~~P~V~~~~~~~~~~tl~Cl~~gf~P~-~~v~---~~~------~~~~~~-----t~~~~l~~~~~~~~~~~~~ 173 (200)
T 2nw2_A 111 YIQN--PDPAVYQLRDSKSSDKSVCLFTDFDSQ-TNVS---QSK------DSDVYI-----TDKCVLDMRSMDFKSNSAV 173 (200)
T ss_dssp CCSS--CCCEEEEEEECC--CCEEEEEESCCTT-CCCC---CCS------SSSEEE-----CCCEEEEEGGGTEEEEEEE
T ss_pred Cccc--CCCeEEEcCCCCCCceEEEEeecccCC-cEee---ccc------ccceEe-----cCchhhhhhhcccccccce
Confidence 2110 0111111 122378899999998555 2331 110 001110 1223455555566667888
Q ss_pred EEEeecC
Q psy3475 150 TCAPSSS 156 (207)
Q Consensus 150 ~C~~~n~ 156 (207)
.|.+.|.
T Consensus 174 ~~~~~~~ 180 (200)
T 2nw2_A 174 AWSNKSD 180 (200)
T ss_dssp EEESSSS
T ss_pred eccCCCc
Confidence 8887775
No 281
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.31 E-value=3.5e-12 Score=80.50 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=61.6
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
+.+...+....+..|+.+.|.|.+.+.|.| .+.|++++..+....+ +.... ......|.|.++..+|+|.|+|.
T Consensus 15 ~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p--~v~W~k~g~~l~~~~~--~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~ 88 (106)
T 1nct_A 15 ARILTKPRSMTVYEGESARFSCDTDGEPVP--TVTWLRKGQVLSTSAR--HQVTT--TKYKSTFEISSVQASDEGNYSVV 88 (106)
T ss_dssp CEEEECCCCEEESSSSCEECCEEEECSSCC--BCCBCSSSSCCTTCSS--EEEEE--CSSEEEEEECCCCSSCCSEEEEC
T ss_pred CEEEECCCCEEEeCCCcEEEEEEEEEcCCC--EEEEEECCEECCCCCC--EEEEE--CCCEEEEEECcCCchhCEEEEEE
Confidence 444555777888999999999999998887 8999998877654332 33322 22457899999999999999999
Q ss_pred eecCC
Q psy3475 153 PSSSD 157 (207)
Q Consensus 153 ~~n~~ 157 (207)
+.|..
T Consensus 89 a~N~~ 93 (106)
T 1nct_A 89 VENSE 93 (106)
T ss_dssp CBCSS
T ss_pred EEeCC
Confidence 99983
No 282
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.31 E-value=4.2e-11 Score=74.09 Aligned_cols=76 Identities=16% Similarity=0.347 Sum_probs=59.7
Q ss_pred cCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 78 GNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.+....+..|+.+.|.|.+.+. |.+ .+.|++++..+....+ +.... ......|.|.+++.+|+|.|+|.+.|.
T Consensus 7 ~~~~~~v~~G~~v~l~C~~~g~~p~~--~v~W~~~~~~~~~~~~--~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 80 (97)
T 2bk8_A 7 QIMHAVGEEGGHVKYVCKIENYDQST--QVTWYFGVRQLENSEK--YEITY--EDGVAILYVKDITKLDDGTYRCKVVND 80 (97)
T ss_dssp CCCCEEECTTCCEEEEEEEESCCTTC--EEEEEETTEECCSSSS--EEEEE--ETTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred cCcCEEEcCCCcEEEEEEEeccCCCC--EEEEEECCEECcCCCC--EEEEE--cCCeEEEEEecCChhhCeEEEEEEECC
Confidence 3556788899999999999997 767 8999999998765433 33222 124568999999999999999999998
Q ss_pred CCC
Q psy3475 157 DGA 159 (207)
Q Consensus 157 ~~~ 159 (207)
.+.
T Consensus 81 ~g~ 83 (97)
T 2bk8_A 81 YGE 83 (97)
T ss_dssp SCE
T ss_pred CCe
Confidence 443
No 283
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.31 E-value=7.4e-11 Score=83.58 Aligned_cols=90 Identities=23% Similarity=0.475 Sum_probs=68.3
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
..+....+..|+.+.|.|.+.+.|.+ .+.|++++..+......++..... .....|.|.++..+|.|.|+|.+.|.
T Consensus 23 ~~p~~~~~~~G~~v~l~C~~~g~p~p--~i~W~~~g~~l~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~ 98 (215)
T 3mtr_A 23 QGPVAVYTWEGNQVNITCEVFAYPSA--TISWFRDGQLLPSSNYSNIKIYNT--PSASYLEVTPDSENDFGNYNCTAVNR 98 (215)
T ss_dssp ECCSEEEECTTCCEEEEEEEEEESCC--EEEEEETTEESSCSSSCSEEEEEE--TTEEEEEECCCSGGGCEEEEEEEECS
T ss_pred cCCceEEEECCCCEEEEEEEeecCCC--EEEEEECCeECCCCCCccEEEecC--CCeeEEEEecCChhhCeEEEEEEEEC
Confidence 45666778899999999999999888 999999999887654444444432 24678999999999999999999998
Q ss_pred CCC---eEEEEEecCCc
Q psy3475 157 DGA---SVVVHVLNGKK 170 (207)
Q Consensus 157 ~~~---~~~~~v~~~~~ 170 (207)
.+. ...+.+...+.
T Consensus 99 ~g~~~~~~~l~v~~~P~ 115 (215)
T 3mtr_A 99 IGQESLEFILVQADTPS 115 (215)
T ss_dssp SCEEEEEEEEEECCCCC
T ss_pred CCceEEEEEEEECCCCC
Confidence 443 33444444333
No 284
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.31 E-value=1.6e-11 Score=77.00 Aligned_cols=73 Identities=16% Similarity=0.293 Sum_probs=55.3
Q ss_pred cCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecCCCCe
Q psy3475 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~ 160 (207)
.++.+.|.|.+.|.|.| .+.|+++|..+..+........... ....+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 15 ~~~~~~~~c~v~G~P~P--~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 88 (103)
T 1wwb_X 15 SDHHWCIPFTVKGNPKP--ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD 88 (103)
T ss_dssp CCCEEEEEEEEECSSCC--EEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE
T ss_pred ECcEEEEEEEEEEeCCC--EEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcE
Confidence 46788999999999999 9999999998876543212221111 2234669999999999999999999995543
No 285
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.30 E-value=2.6e-11 Score=76.66 Aligned_cols=85 Identities=19% Similarity=0.292 Sum_probs=58.7
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCC---CCcEEEEEeCCEEEEec-CCCceEEE--Eec--ccceEEEEEEecccC
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPD---PPSFIYWYRGANVVNYS-QRGGISVV--TEK--QTRTSRLVISKAVTS 144 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~~~~W~~~~~~~~~~-~~~~~~~~--~~~--~~~~~~l~i~~~~~~ 144 (207)
|.++..|..+.+..|+.++|.|.+.+.|. | .+.|++++...... ...++... ... ......|.|.+++.+
T Consensus 5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 82 (108)
T 3cx2_A 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPP--VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA 82 (108)
T ss_dssp CSCSBCCCCEEEETTCCEEEEEEEECC-CCSCC--EEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred cEEEeCCCcEEEeCCCCEEEEEEECCCccCCCc--EEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence 34445577788899999999999999876 6 89999977322111 11222221 111 112468999999999
Q ss_pred CCeEEEEEeecCCCC
Q psy3475 145 DSGNYTCAPSSSDGA 159 (207)
Q Consensus 145 d~g~Y~C~~~n~~~~ 159 (207)
|+|.|+|.+.|..+.
T Consensus 83 D~G~Y~C~a~N~~G~ 97 (108)
T 3cx2_A 83 FTGSYRCEVSTKDKF 97 (108)
T ss_dssp GCEEEEEEEECSSCE
T ss_pred cCEEEEEEEecCCCc
Confidence 999999999998443
No 286
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.30 E-value=5.2e-12 Score=77.37 Aligned_cols=67 Identities=24% Similarity=0.433 Sum_probs=52.9
Q ss_pred EEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 83 ~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.+..|+.+.|.|.+.+ |.+ .+.|+++|..+..+.+ +....+ .....|.|.++..+|+|.|+|.|.|.
T Consensus 17 ~~~~g~~v~l~C~v~~-p~~--~v~W~k~g~~i~~~~~--~~i~~~--~~~~~L~I~~v~~~D~G~Y~C~a~n~ 83 (91)
T 2lvc_A 17 HAITSECVMLACEVDR-EDA--PVRWYKDGQEVEESDF--VVLENE--GPHRRLVLPATQPSDGGEFQCVAGDE 83 (91)
T ss_dssp ECCTTCCEEEEEECSC-TTS--CCEEEETTSCCCCCSS--CEEEEE--TTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred EEECCCcEEEEEEECC-CCc--EEEEEECCEEeeeeee--eeEEec--CCeEEEEeCCCChhhcEEEEEEEcce
Confidence 3457999999999855 666 6899999998876654 333332 24568999999999999999999886
No 287
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.30 E-value=6.2e-12 Score=80.83 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=59.9
Q ss_pred EEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCC
Q psy3475 66 KLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 66 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.|.|..+|.+..... .. ......|.|.+.+.|.| .+.|+++|..+.......+............|.|.++..+|
T Consensus 2 ~L~V~~pP~i~~~~~-~~--~~~~~~l~C~~~g~P~p--~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 76 (118)
T 1wwc_A 2 ALTVYYPPRVVSLEE-PE--LRLEHCIEFVVRGNPPP--TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYN 76 (118)
T ss_dssp --CCCCCCCCCCCCC-CC--CCCEEEEEEEEECSSCC--EEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGG
T ss_pred EEEEecCCceeccCC-Ce--eccceEEEEEeeeeCCC--eEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhc
Confidence 355566665433321 11 23567889999998888 89999999988765443332221111235689999999999
Q ss_pred CeEEEEEeecCCCC
Q psy3475 146 SGNYTCAPSSSDGA 159 (207)
Q Consensus 146 ~g~Y~C~~~n~~~~ 159 (207)
+|.|+|.|.|..+.
T Consensus 77 ~G~Y~C~a~N~~G~ 90 (118)
T 1wwc_A 77 NGNYTLIAKNPLGT 90 (118)
T ss_dssp CEEEEEEEEETTEE
T ss_pred CEEEEEEEECCCCe
Confidence 99999999998443
No 288
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.29 E-value=6e-11 Score=82.39 Aligned_cols=82 Identities=17% Similarity=0.338 Sum_probs=63.9
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+......++..... .....|.|.+++.+|+|.|+|
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C 80 (194)
T 2a38_A 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVP--EVSWFRDGQVISTSTLPGVQISFS--DGRAKLTIPAVTKANSGRYSL 80 (194)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCC--EEEEEESSSBCCTTTSTTCEEEEE--TTEEEEEESSCCGGGCEEEEE
T ss_pred CCeEEccCCceEEECCCEEEEEEEEEecCCC--EEEEEECCEEcccccCCceEEEeC--CCEEEEEECCCCcccCEEEEE
Confidence 4555566777888999999999999998777 899999998776554323333222 245789999999999999999
Q ss_pred EeecCC
Q psy3475 152 APSSSD 157 (207)
Q Consensus 152 ~~~n~~ 157 (207)
.+.|..
T Consensus 81 ~~~n~~ 86 (194)
T 2a38_A 81 KATNGS 86 (194)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 999873
No 289
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}
Probab=99.29 E-value=6.6e-12 Score=89.61 Aligned_cols=111 Identities=19% Similarity=0.181 Sum_probs=75.9
Q ss_pred CeeEEccCCccceeeEEEE---eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-----ceeeeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTY---TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-----KISIGYKLNVVIS 72 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~~~ 72 (207)
+.||||.++..+...++.. ...+||.+..+...+.++|+|.+++.+|+|.|.|.+.... .......|.|...
T Consensus 32 v~Wyrq~pg~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sLtI~~lq~~DSG~Y~Ca~~~~~~~~~~~fG~GT~L~V~~~ 111 (229)
T 3mbe_C 32 VQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSVKPN 111 (229)
T ss_dssp EEEEEECSSSCBCCCEEESSEEEEETTEEEEEETTTTEEEEEECSCCSTTCBEEEEEEECSSSTTCEEECCCCEEEEECC
T ss_pred EEEEEECCCCCcEEEEEeCCCCccCCCEEEEECCCCCEEEEEEECCcccCCCCEEEEEEeCCCcccceeCCCEEEEEecc
Confidence 5899998776555443322 2358898877777788999999999999999999987421 1234457777642
Q ss_pred ---c-ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEE
Q psy3475 73 ---K-AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVN 116 (207)
Q Consensus 73 ---~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~ 116 (207)
+ +.+..+ ......++|.|.+.+..+ .+.+.|.+++..+.
T Consensus 112 ~~~p~P~Vf~~----~~~~~~vtl~Cl~~gf~P-~i~v~~~~~~~~~~ 154 (229)
T 3mbe_C 112 IQNPEPAVYQL----KDPRSQDSTLCLFTDFDS-QINVPKTMESGTFI 154 (229)
T ss_dssp CSSCCCEEEEE----ECTTCTTCEEEEEESCCS-SSCCCCCCSSSEEE
T ss_pred cCCCCCEEEEc----cCCCCCEEEEEEccccCC-ceEeEeeccCceEe
Confidence 1 111111 112235889999999876 66899998887664
No 290
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=1.7e-11 Score=77.21 Aligned_cols=88 Identities=24% Similarity=0.363 Sum_probs=65.1
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
++.+...+....+..|+.+.|.|.+.+.+.+ +.|++++..+....+ +....+ .....|.|.++..+|+|.|+|
T Consensus 8 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~---v~W~k~g~~~~~~~~--~~~~~~--~~~~~L~I~~v~~~D~G~Y~C 80 (106)
T 2dlt_A 8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVT---GKWYKNGVEVRPSKR--ITISHV--GRFHKLVIDDVRPEDEGDYTF 80 (106)
T ss_dssp CCCEEECCCCEEEESSCCEECCCEESCSSCE---EEEEESSCBCCCCSS--CEEEEE--TTEEEEEESSCCTTTCSCEEE
T ss_pred CCEEecCCCCeEEeCCCeEEEEEEEcCCCcc---eEEEcCCEECcCCCC--EEEEEe--CCEEEEEECCCCcCCCEEEEE
Confidence 3445556777888999999999999876533 899999988765544 333222 245689999999999999999
Q ss_pred EeecC-CCCeEEEEEe
Q psy3475 152 APSSS-DGASVVVHVL 166 (207)
Q Consensus 152 ~~~n~-~~~~~~~~v~ 166 (207)
.+.|. ......+.|.
T Consensus 81 ~a~n~~~~~~~~l~V~ 96 (106)
T 2dlt_A 81 VPDGYALSLSAKLNFL 96 (106)
T ss_dssp EEETSCCCCCBCEEEE
T ss_pred EEccCCceEEEEEEEE
Confidence 99997 3344455555
No 291
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=3.5e-12 Score=80.18 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=65.0
Q ss_pred ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
.+...+....+..|+.+.|.|.+.+.+.+. .+.|+++|..+..+.+ +....+ .....|.|.+++.+|+|.|+|.+
T Consensus 10 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~-~v~W~k~g~~i~~~~r--~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a 84 (104)
T 2eny_A 10 GITKRLKTMEVLEGESCSFECVLSHESASD-PAMWTVGGKTVGSSSR--FQATRQ--GRKYILVVREAAPSDAGEVVFSV 84 (104)
T ss_dssp CCSBCCCCEEEESSCCEEEEEECSSCCCSS-CBCCBSSSSBCSBCSS--CEEEEE--TTEEEEEECSCCTTTCSCEEEEE
T ss_pred EEEecCCCcEEcCCCcEEEEEEEcCCCCCc-eeEEEECCEECCCCCC--EEEEEc--CCEEEEEECCCCHHHCEEEEEEE
Confidence 344456778889999999999998875432 5899999988766544 333332 24568999999999999999998
Q ss_pred ecCCCCeEEEEEecC
Q psy3475 154 SSSDGASVVVHVLNG 168 (207)
Q Consensus 154 ~n~~~~~~~~~v~~~ 168 (207)
.|. .....|.|...
T Consensus 85 ~~~-~~~a~L~V~~~ 98 (104)
T 2eny_A 85 RGL-TSKASLIVRER 98 (104)
T ss_dssp TTE-EEEECEEEECC
T ss_pred CCe-eEEEEEEEeCC
Confidence 775 34455555543
No 292
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.28 E-value=2.4e-11 Score=78.59 Aligned_cols=91 Identities=24% Similarity=0.330 Sum_probs=62.6
Q ss_pred eEecCcceEEecCCcEEEEEEEeeC---CCCCcEEEEEeCCEE-EEecCCCceEEE--Eec--ccceEEEEEEecccCCC
Q psy3475 75 KIIGNSELYIKSGSDINLTCVVLET---PDPPSFIYWYRGANV-VNYSQRGGISVV--TEK--QTRTSRLVISKAVTSDS 146 (207)
Q Consensus 75 ~~~~~~~~~~~~g~~~~l~C~~~~~---~~~~~~~~W~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~l~i~~~~~~d~ 146 (207)
++..|..+.+.+|+.++|.|.+.+. |.| .|.|+++... +......++... .++ ......|.|.+++..|+
T Consensus 10 F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P--~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da 87 (126)
T 2dav_A 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKP--TIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA 87 (126)
T ss_dssp CCSCCCCCEEETTCCEEEEEEEECCCSSSCC--EEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred EEEcCCCeEEeCCCCEEEEEEEeccCCCCCC--cEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence 4455778889999999999999875 566 9999996421 111111222221 111 11247899999999999
Q ss_pred eEEEEEeecC---CCCeEEEEEec
Q psy3475 147 GNYTCAPSSS---DGASVVVHVLN 167 (207)
Q Consensus 147 g~Y~C~~~n~---~~~~~~~~v~~ 167 (207)
|.|+|.+.|. ....+.|.|..
T Consensus 88 G~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 88 GNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp EEEEEEEECSSCEEEECCEEEEEC
T ss_pred EEEEEEEEeCCCcEEEEEEEEEEe
Confidence 9999999998 33456777775
No 293
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=3e-11 Score=76.87 Aligned_cols=92 Identities=24% Similarity=0.291 Sum_probs=65.4
Q ss_pred EeccceEecCcc---eEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCC
Q psy3475 70 VISKAKIIGNSE---LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146 (207)
Q Consensus 70 ~~~~~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 146 (207)
..+|..+..+.. ..+..|+.+.|.|.+. .+.+ .+.|++++..+....+ +....+ .....|.|.++..+|+
T Consensus 8 ~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~--~v~W~k~g~~~~~~~~--~~~~~~--~~~~~L~I~~v~~~D~ 80 (113)
T 2cpc_A 8 TDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWA--EVRWTKDGEEVVESPA--LLLQKE--DTVRRLVLPAVQLEDS 80 (113)
T ss_dssp CSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTC--CCEEEETTEECCCBTT--BEEEEC--SSEEEEEESSCCTTTC
T ss_pred ccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCC--eEEEEECCEECccCCC--EEEEEC--CCEEEEEECCCCcccC
Confidence 344544444443 5677899999999995 5555 7899999998766543 233221 2346899999999999
Q ss_pred eEEEEEeecCCCCeEEEEEecCC
Q psy3475 147 GNYTCAPSSSDGASVVVHVLNGK 169 (207)
Q Consensus 147 g~Y~C~~~n~~~~~~~~~v~~~~ 169 (207)
|.|+|.+.| ......+.|...+
T Consensus 81 G~Y~C~a~n-~~~~~~l~V~~~p 102 (113)
T 2cpc_A 81 GEYLCEIDD-ESASFTVTVTEPP 102 (113)
T ss_dssp EEEEEESSS-CEEEEEEEEECCC
T ss_pred EEEEEEEec-CcEEEEEEEecCC
Confidence 999999999 4555666666443
No 294
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.28 E-value=2.2e-10 Score=79.16 Aligned_cols=115 Identities=10% Similarity=0.163 Sum_probs=79.9
Q ss_pred CCcEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEeccceE-ecCcceEEecCCcEEEEEEEeeCCCCC-cEEEEE
Q psy3475 33 SDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKI-IGNSELYIKSGSDINLTCVVLETPDPP-SFIYWY 109 (207)
Q Consensus 33 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~~~W~ 109 (207)
.+...|.|.+++. | |.|.|.+...+ .....+.|.|..+|..+ +.+....+.+|+.++|.|.+.+..++. ..|.|+
T Consensus 47 ~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~ 124 (185)
T 1iam_A 47 NNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLL 124 (185)
T ss_dssp SSEEEEEEEEECS-C-BCCEEEEECSSCEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEE
T ss_pred CceeEEEEEecCc-C-CEEEEEEECCCCceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEE
Confidence 3445789999984 4 99999997543 46677888888776544 334444578999999999999964443 258999
Q ss_pred eCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 110 RGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+++..+...... ......+|.+.....+|...|+|+|.|.
T Consensus 125 kg~~~l~~~~~~-------~~~~~~tl~~~~~reD~g~~~sC~A~~~ 164 (185)
T 1iam_A 125 RGEKELKREPAV-------GEPAEVTTTVLVRRDHHGAQFSCRTELD 164 (185)
T ss_dssp ETTEEEEEEECC-------TTTEEEEEEEECCSSCSSCEEEEEEEEE
T ss_pred eCCEEcccccCC-------CccccEEEEEeceeccCCCeEEEEEEec
Confidence 999988643210 0112335666655555555999999987
No 295
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.28 E-value=9.9e-12 Score=77.34 Aligned_cols=73 Identities=23% Similarity=0.451 Sum_probs=56.9
Q ss_pred cceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCc-eEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG-ISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
....+..|+.+.|.|.+.+.|.+ .+.|++++..+....... .... .....|.|.++..+|+|.|+|.+.|..+
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p--~v~W~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~g 89 (100)
T 3caf_A 16 RLHAVPAANTVKFRCPAGGNPMP--TMRWLKNGKEFKQEHRIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYG 89 (100)
T ss_dssp CEEEECTTCCEEEECCEEEESCC--EEEEEETTEECCGGGSTTCCEEE----GGGTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred cEEEecCCCEEEEEEEccccCCC--EEEEEECCEEcccccccccEEEe----cCeEEEEEccCCcCCCEEEEEEEEeCCC
Confidence 35667789999999999998888 899999998876543321 1111 1235799999999999999999999843
No 296
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=8.3e-12 Score=80.20 Aligned_cols=89 Identities=25% Similarity=0.390 Sum_probs=65.3
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.... .++.... ...|.|.+++.+|+|.|+|
T Consensus 8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p--~i~W~k~g~~~~~~~-~~~~~~~-----~~~L~i~~v~~~D~G~Y~C 79 (118)
T 2eo9_A 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVP--TILWRKDGVLVSTQD-SRIKQLE-----NGVLQIRYAKLGDTGRYTC 79 (118)
T ss_dssp SCCCSBCCCCEEEETTCEEEEECBCCCSSCC--EEEEEESSSBCCTTS-TTEEEEE-----TTEEEEESCCGGGCCCEEE
T ss_pred CCEEEcCCCCEEEcCCCeEEEEEEEEecCCC--EEEEEECCEECcCCC-CeEEEcc-----CCEEEEccCCcCCCEEEEE
Confidence 3444455677888999999999999998877 899999988775422 2333322 3479999999999999999
Q ss_pred EeecCCCC---eEEEEEecC
Q psy3475 152 APSSSDGA---SVVVHVLNG 168 (207)
Q Consensus 152 ~~~n~~~~---~~~~~v~~~ 168 (207)
.+.|..+. ...+.|...
T Consensus 80 ~a~n~~g~~~~~~~l~V~~~ 99 (118)
T 2eo9_A 80 IASTPSGEATWSAYIEVQEF 99 (118)
T ss_dssp EEECSSCEEEEECCEEEECC
T ss_pred EEEcCCCcEEEEEEEEEEeC
Confidence 99998433 234555543
No 297
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.26 E-value=2.3e-11 Score=78.63 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=55.1
Q ss_pred cCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEe---cccceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTE---KQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 86 ~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
.+..+.|.|.+.|.|.| .+.|+++|..+..+.+........ .......|.|..+...|+|.|+|.|.|..+.
T Consensus 14 ~~~~~~l~c~v~G~P~P--~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~ 88 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAP--SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ 88 (126)
T ss_dssp CCCEEEEEEEECCSSCC--EEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEE
T ss_pred cCccEEEEEEEeeeCCC--eEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCe
Confidence 46788999999999999 999999999987655422222110 0113468999999999999999999999443
No 298
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.26 E-value=6.4e-11 Score=74.53 Aligned_cols=83 Identities=20% Similarity=0.327 Sum_probs=59.0
Q ss_pred eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCE-EEEecC-----CCceEEEEecccceEEEEEEecccC
Q psy3475 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN-VVNYSQ-----RGGISVVTEKQTRTSRLVISKAVTS 144 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~ 144 (207)
.+|.+...+....+..|+.+.|.|.+.+.+.+ .+.|++++. .+.... ..++..... ......|.|.+++.+
T Consensus 5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~ 81 (108)
T 3m45_A 5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNT--SLQWSNPAQQTLYFDDKKALRDNRIELVRA-SWHELSISVSDVSLS 81 (108)
T ss_dssp ---CCCEECCCEEEETTSCEEEEEEESSCSSC--CEEEECTTCCEEEETTEECSCCTTEEEEEE-SSSEEEEEECSCCGG
T ss_pred cCCCccccCCeeEEEeCCcEEEEeEEcCCCcc--EEEEEcCCCceEEEcCCcccccCcEEEeec-CCCcEEEEECCCChh
Confidence 34555566778889999999999999998766 799998765 332221 123332221 124678999999999
Q ss_pred CCeEEEEEeecC
Q psy3475 145 DSGNYTCAPSSS 156 (207)
Q Consensus 145 d~g~Y~C~~~n~ 156 (207)
|+|.|+|.+.|.
T Consensus 82 D~G~Y~C~~~n~ 93 (108)
T 3m45_A 82 DEGQYTCSLFTM 93 (108)
T ss_dssp GCEEEEEEECSS
T ss_pred HCeEEEEEEEcC
Confidence 999999999993
No 299
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}
Probab=99.26 E-value=3.5e-12 Score=89.33 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=77.0
Q ss_pred CeeEEccCCccceeeEEEEeC-----CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEEEec-
Q psy3475 1 VSWIRKRDLHILTVGILTYTN-----DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVIS- 72 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~- 72 (207)
+.||||.++..+....+.... .+||.+..+...+.++|+|.+++.+|+|.|.|.+..... ......|.|...
T Consensus 32 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~ 111 (199)
T 3gsn_A 32 LHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNI 111 (199)
T ss_dssp EEEEEECTTSCCEEEEEECSTTCCCEETTEECCCBTTTTEEEEEBSSCCGGGCEEEEEEEESSSCEEECSCEEEEEECCC
T ss_pred EEEEEECCCCCcEEEEEECCCCCccccCceEEEECCCCCEEEEEEccCcccCCccEEEEEcccccccCCCCEEEEEeccc
Confidence 589999887666554443321 478887766677889999999999999999999864222 234457777652
Q ss_pred --c-ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEe
Q psy3475 73 --K-AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNY 117 (207)
Q Consensus 73 --~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~ 117 (207)
+ +.+..+... ...++|.|.+.+..+ .+.+.|.++|..+..
T Consensus 112 ~~~~P~V~~~~~~----~~~~tl~Cl~~gf~P-~i~~~~~~~~~~~~~ 154 (199)
T 3gsn_A 112 QNPDPAVYQLRDS----KSSDKSVCLFTDFDS-QTNVSQSKDSDAYIT 154 (199)
T ss_dssp SSCCCEEEECCCS----SSSSSCCEEEETCCT-TCCSSCSSCSSEEEC
T ss_pred CCCCCEEEEcccC----CCCceEEEEeecccC-CeEeEeccCCCeEec
Confidence 1 122212111 133678999999876 678999998877654
No 300
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Probab=99.26 E-value=7.3e-12 Score=88.15 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=74.0
Q ss_pred CeeEEccCCccceeeEEEEe----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC------CceeeeEEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE------PKISIGYKLNVV 70 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~------~~~~~~~~l~v~ 70 (207)
+.||||.++..+...++... ..+||.+..+...+.++|+|.+++.+|+|.|.|.+... ........|.|.
T Consensus 34 v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~DsG~Y~Ca~~~~~~~~~~~~fG~GT~L~V~ 113 (208)
T 4ei6_A 34 FWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVF 113 (208)
T ss_dssp EEEEEECTTSCCEEEEECCSSEEEEETTEEEEEBTTTTBC-CEECSCCGGGCEEEEEEEEECCSSCCCCEECCCEEEEEE
T ss_pred EEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEcCCCCEEEEEEEeCcccCCCcEEEEEecCCCccccccCCCCEEEEEe
Confidence 57999987766554433221 25789887777778899999999999999999998642 123345577776
Q ss_pred eccceEecCcceEEe--cCCcEEEEEEEeeCCCCCcEEEEEeCCEEEE
Q psy3475 71 ISKAKIIGNSELYIK--SGSDINLTCVVLETPDPPSFIYWYRGANVVN 116 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~--~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~ 116 (207)
..... ..+.+... ....++|.|.+.+.++ .+.+.|.++|..+.
T Consensus 114 ~~~~~--~~PsVf~l~~~~~~~tl~Cl~~~f~P-~i~v~~~~~~~~~~ 158 (208)
T 4ei6_A 114 PYIQN--PDPAVYQLRDSKSSDKSVCLFTDFDS-QTNVSQSKDSDVYI 158 (208)
T ss_dssp CCCSS--CCCEEEEEEBSSCTTCEEEEEESCCT-TCCCCCCSSTTCEE
T ss_pred CcccC--CCCEEEEcccCCCCceEEEEeeccCC-ceEeeecccCcEEE
Confidence 52100 01111111 1123679999999876 66899998776554
No 301
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=99.26 E-value=5.8e-11 Score=75.05 Aligned_cols=87 Identities=16% Similarity=0.277 Sum_probs=60.5
Q ss_pred eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEE-Eec---ccceEEEEEEecccCCC
Q psy3475 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV-TEK---QTRTSRLVISKAVTSDS 146 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~---~~~~~~l~i~~~~~~d~ 146 (207)
.+|.+...+....+..|+.+.|.|.+.+.+.+...+.|++++..+........... ... ......|.|.+++.+|+
T Consensus 9 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 88 (112)
T 3so5_A 9 PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE 88 (112)
T ss_dssp CSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred CCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccC
Confidence 34555556677788899999999999987554448999999987643211000000 000 01146899999999999
Q ss_pred eEEEEEeecCC
Q psy3475 147 GNYTCAPSSSD 157 (207)
Q Consensus 147 g~Y~C~~~n~~ 157 (207)
|.|+|.+.|..
T Consensus 89 G~Y~C~a~n~~ 99 (112)
T 3so5_A 89 GXYQCVISNHF 99 (112)
T ss_dssp EEEEEEEEETT
T ss_pred CeEEEEEEeCC
Confidence 99999999973
No 302
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.25 E-value=1.4e-10 Score=80.59 Aligned_cols=81 Identities=23% Similarity=0.386 Sum_probs=63.7
Q ss_pred eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEE
Q psy3475 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 150 (207)
.+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... +.... ......|.|.++..+|+|.|+
T Consensus 6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~--~~~~~--~~~~~~L~i~~~~~~d~G~Y~ 79 (197)
T 3lcy_A 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLP--DIKWYRFGKELIQSRK--YKMSS--DGRTHTLTVMTEEQEDEGVYT 79 (197)
T ss_dssp EEEEEEECCCCEEEETTSEEEEEEEEEEESCC--EEEEEETTEEECCCSS--EEEEE--SSSEEEEEEECCSGGGCEEEE
T ss_pred CCCcccccCCceEEeCCCcEEEEEEEecCCCC--EEEEEECCEECCCCcc--EEEEe--CCCEEEEEEecCCccCCEEEE
Confidence 45556666778888999999999999998777 8999999988865433 22222 224568999999999999999
Q ss_pred EEeecCC
Q psy3475 151 CAPSSSD 157 (207)
Q Consensus 151 C~~~n~~ 157 (207)
|.+.|..
T Consensus 80 C~~~n~~ 86 (197)
T 3lcy_A 80 CIATNEV 86 (197)
T ss_dssp EEEECSS
T ss_pred EEEECCC
Confidence 9999873
No 303
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.25 E-value=7.3e-11 Score=73.44 Aligned_cols=88 Identities=14% Similarity=0.209 Sum_probs=61.8
Q ss_pred ccceEecCcc-eEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEE
Q psy3475 72 SKAKIIGNSE-LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 72 ~~~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 150 (207)
+|.+...+.. ..+..|+.+.|.|.+. .|.+ .+.|++++..+....+ +....+ .....|.|.++..+|+|.|+
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~--~v~W~k~g~~i~~~~~--~~~~~~--~~~~~L~I~~~~~~D~G~Y~ 79 (100)
T 2yuv_A 7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKL--EVKWYKNGQEIRPSTK--YIFEHK--GCQRILFINNCQMTDDSEYY 79 (100)
T ss_dssp SCCEEECCCSCEEECTTEEEEEEEEES-CTTS--CEEEEESSCBCCCBTT--EEEEEE--TTEEEEEEEEECTTTCCEEE
T ss_pred CCeEEecCCCccEEcCCCcEEEEEEec-CCCc--eEEEEECCEECCCCCC--EEEEec--CCEEEEEEcCCCcCcCEEEE
Confidence 3444444554 5677999999999998 5666 8999999988765543 333322 24468999999999999999
Q ss_pred EEeecCCCCeEEEEEec
Q psy3475 151 CAPSSSDGASVVVHVLN 167 (207)
Q Consensus 151 C~~~n~~~~~~~~~v~~ 167 (207)
|.+.+ ......+.|..
T Consensus 80 C~ag~-~~~~~~l~V~~ 95 (100)
T 2yuv_A 80 VTAGD-EKCSTELFVRS 95 (100)
T ss_dssp EEETT-EEEEEEEEECC
T ss_pred EEECC-ceEEEEEEEec
Confidence 99932 33344555543
No 304
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.6e-12 Score=81.11 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=69.3
Q ss_pred EEEEEecc-ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccC
Q psy3475 66 KLNVVISK-AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144 (207)
Q Consensus 66 ~l~v~~~~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 144 (207)
.|.|..++ .+...+....+..|+.+.|.|.+.+.|.| .+.|++++..+....+..+... ......|.|.++..+
T Consensus 6 ~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~k~g~~l~~~~~~~~~~~---~~~~~~L~I~~v~~~ 80 (115)
T 2cr6_A 6 SGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYE--PVHWFLDKTPLHANELNEIDAQ---PGGYHVLTLRQLALK 80 (115)
T ss_dssp CCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCC--SCEEEESSCEECCSSSCCBCCB---TTTBCCBEECSCCTT
T ss_pred EEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCC--ccEEEECCEECCCCCcEEEEEc---CCCEEEEEEcCCChh
Confidence 44555544 34455677888999999999999998877 7899999998876544222110 123457999999999
Q ss_pred CCeEEEEEeecCCCCeEEEEEecC
Q psy3475 145 DSGNYTCAPSSSDGASVVVHVLNG 168 (207)
Q Consensus 145 d~g~Y~C~~~n~~~~~~~~~v~~~ 168 (207)
|+|.|+|.+.+. .....|.|...
T Consensus 81 D~G~Y~C~~g~~-~~~~~L~V~~~ 103 (115)
T 2cr6_A 81 DSGTIYFEAGDQ-RASAALRVTEK 103 (115)
T ss_dssp TCEEEEEEETTE-ECCEEEEEECC
T ss_pred hCEEEEEEECCe-eEEEEEEEECC
Confidence 999999995443 34456666643
No 305
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=5.4e-11 Score=75.51 Aligned_cols=91 Identities=12% Similarity=0.181 Sum_probs=67.8
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecC-CC-------ceEEEEecccceEEEEEEecccC
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQ-RG-------GISVVTEKQTRTSRLVISKAVTS 144 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~l~i~~~~~~ 144 (207)
+.+...+.+..+.+|+.+.|.|.+.+ .+ .+.|+++|..+..+. .. ++.... ......|.|.++..+
T Consensus 9 ~~~~~~l~d~~v~eG~~a~f~C~vs~--~p--~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~--~g~~~~L~I~~v~~~ 82 (112)
T 2e6q_A 9 ARLVAGLEDVQVYDGEDAVFSLDLST--II--QGTWFLNGEELKSNEPEGQVEPGALRYRIEQ--KGLQHRLILHAVKHQ 82 (112)
T ss_dssp CCEEECCCCEEEETTCEEEEEEEESS--CC--CCEEEESSCBCCSSCCCTTSCTTSCEEEECC--BTTEEEEEEESCCST
T ss_pred cEEecCCCCeEEcCCCcEEEEEEECC--CC--eEEEEECCEECccCcccccccccccEEEEEe--CCcEEEEEECCCCHH
Confidence 34556678889999999999999997 45 679999999987654 11 344332 224568999999999
Q ss_pred CCeEEEEEeecCCCCeEEEEEecCC
Q psy3475 145 DSGNYTCAPSSSDGASVVVHVLNGK 169 (207)
Q Consensus 145 d~g~Y~C~~~n~~~~~~~~~v~~~~ 169 (207)
|+|.|+|...+....+..|.|...+
T Consensus 83 D~G~Y~~~~~~~~~ssA~L~V~~~p 107 (112)
T 2e6q_A 83 DSGALVGFSCPGVQDSAALTIQESS 107 (112)
T ss_dssp TCSEEEEEEETTEEEEEEEEEECSS
T ss_pred HCccEEEEEECCeeEEEEEEEeCCC
Confidence 9999988666665556777777544
No 306
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.25 E-value=1.1e-11 Score=82.03 Aligned_cols=76 Identities=20% Similarity=0.386 Sum_probs=57.4
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC----------------------------EEEEecCCCceEEEEecc
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA----------------------------NVVNYSQRGGISVVTEKQ 130 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~----------------------------~~~~~~~~~~~~~~~~~~ 130 (207)
+..+.+..|+.+.|.|.+.|.|.| .+.|++++ ..+.. ...++.....
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P--~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~r~~i~~~-- 99 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAP--TVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCE-TEGRVRVETT-- 99 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCC--EEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCS-CSSSCEEEEE--
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCC--eEEEEECCcccccccccccccccccccccccccccceeecC-CCCeEEEEeC--
Confidence 556788899999999999999988 89999987 33311 1123333321
Q ss_pred cceEEEEEEecccCCCeEEEEEeecCCCC
Q psy3475 131 TRTSRLVISKAVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 131 ~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~ 159 (207)
...+.|.|.++..+|+|.|+|.|.|..+.
T Consensus 100 ~~~s~L~I~~v~~~DsG~Y~C~A~N~~G~ 128 (139)
T 1gxe_A 100 KDRSIFTVEGAEKEDEGVYTVTVKNPVGE 128 (139)
T ss_dssp TTEEEEECSCCCTTTCEEEEEEEECSSCE
T ss_pred CCEEEEEECCCCcccCEEEEEEEEeCCce
Confidence 23568999999999999999999999443
No 307
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.25 E-value=2.3e-10 Score=79.65 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=69.2
Q ss_pred ccceEecCcceEEecCCcEEEEEEEe-eCCCCCcEEEEEeCCEEEEecCCCceEEEEeccc-----ceEEEEEEecccCC
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVL-ETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT-----RTSRLVISKAVTSD 145 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d 145 (207)
++.+...+....+..|+.+.|.|.+. +.|.+ .+.|++++..+......+......... ....|.|.+++.+|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 79 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPP--EVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSD 79 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCC--CCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTT
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCc--EEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccC
Confidence 45666778888899999999999999 87766 799999998876542222222221100 04689999999999
Q ss_pred CeEEEEEeecCC----CCeEEEEEecCC
Q psy3475 146 SGNYTCAPSSSD----GASVVVHVLNGK 169 (207)
Q Consensus 146 ~g~Y~C~~~n~~----~~~~~~~v~~~~ 169 (207)
+|.|+|.+.|.. .....+.|...+
T Consensus 80 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~p 107 (195)
T 2c5d_C 80 TGQYQCLVFLGHQTFVSQPGYVGLEGLP 107 (195)
T ss_dssp CEEEEEEEEETTEEEECCCEEEEECCSC
T ss_pred CcEEEEEEEeCCCceecccEEEEEecCC
Confidence 999999999973 233566665443
No 308
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=99.25 E-value=1.4e-11 Score=79.00 Aligned_cols=85 Identities=20% Similarity=0.334 Sum_probs=57.7
Q ss_pred eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCC-CceEEEEecccceEE--EEEEecccCCCe
Q psy3475 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR-GGISVVTEKQTRTSR--LVISKAVTSDSG 147 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~--l~i~~~~~~d~g 147 (207)
.+|.+...+....+..|+.+.|.|.+.+.|.| .+.|++++..+..... .+............. +.+.+++.+|+|
T Consensus 8 ~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G 85 (117)
T 2v9t_A 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTP--TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG 85 (117)
T ss_dssp EEEEEEECCCCEEECTTCCEEECCEEEEESCC--EEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCE
T ss_pred CCCeeEcCCCCEEEcCCCcEEEEEECCccCCC--eEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCE
Confidence 45666666777888999999999999999888 8999999988765421 111111100111111 222256789999
Q ss_pred EEEEEeecCC
Q psy3475 148 NYTCAPSSSD 157 (207)
Q Consensus 148 ~Y~C~~~n~~ 157 (207)
.|+|.+.|..
T Consensus 86 ~Y~C~a~N~~ 95 (117)
T 2v9t_A 86 VYVCVARNYL 95 (117)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEEeCc
Confidence 9999999983
No 309
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.24 E-value=9.6e-12 Score=76.78 Aligned_cols=74 Identities=23% Similarity=0.442 Sum_probs=57.9
Q ss_pred ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
.+...+....+..|+.+.|.|.+.+.| + .+.|++++..+....+ +.. ....|.|.+++.+|+|.|+|.+
T Consensus 11 ~~~~~~~~~~v~~G~~v~l~C~~~g~p-p--~i~W~k~g~~~~~~~~--~~~------~~~~L~i~~~~~~D~G~Y~C~a 79 (95)
T 2ckn_A 11 GVPVEVESLLVHPGDLLQLRCRLRDDV-Q--SINWLRDGVQLVESNR--TRI------TGEEVEVRDSIPADSGLYACVT 79 (95)
T ss_dssp CBTTBBCCEEECTTSCEEEECCEESSC-C--EEEEEBTTBCCCCCSS--EEE------CSSEEEESSCCGGGSEEEEEEE
T ss_pred EEEcCcceEEEcCCCeEEEEEECCCCC-C--ceEEEECCEecCCCCC--EEE------eCCEEEECCCChHHCEEEEEEe
Confidence 333446677888999999999999975 6 8999999987764433 221 1458999999999999999999
Q ss_pred ecCCC
Q psy3475 154 SSSDG 158 (207)
Q Consensus 154 ~n~~~ 158 (207)
.|..+
T Consensus 80 ~n~~g 84 (95)
T 2ckn_A 80 SSPSG 84 (95)
T ss_dssp EETTE
T ss_pred ccCCC
Confidence 99843
No 310
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.24 E-value=2.4e-11 Score=77.42 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=68.9
Q ss_pred eeeeEEEEEEecc-ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEE
Q psy3475 61 ISIGYKLNVVISK-AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139 (207)
Q Consensus 61 ~~~~~~l~v~~~~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 139 (207)
....+.|.|...| .+...+....+..|+.+.|.|.+.+. | .+.|++++..+....+ +....+ .....|.|.
T Consensus 7 ~~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p--~v~W~k~~~~l~~~~~--~~~~~~--~~~~~L~I~ 78 (113)
T 2edh_A 7 GRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--A--PVEWWKGHETLRDGDR--HSLRQD--GARCELQIR 78 (113)
T ss_dssp CCCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--C--CCEEEESSSBCCCSSS--EEEEEE--TTEEEEEEC
T ss_pred CcEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--C--cEEEEECCEECCCCCc--EEEEEC--CCEEEEEEC
Confidence 3445566666444 55566777888999999999999764 4 6899999987765433 333332 235689999
Q ss_pred ecccCCCeEEEEEeecCCCCeEEEEEec
Q psy3475 140 KAVTSDSGNYTCAPSSSDGASVVVHVLN 167 (207)
Q Consensus 140 ~~~~~d~g~Y~C~~~n~~~~~~~~~v~~ 167 (207)
++..+|+|.|+|.+.+ ......+.|..
T Consensus 79 ~v~~~D~G~Y~C~a~~-~~~~~~l~V~~ 105 (113)
T 2edh_A 79 GLVAEDAGEYLCMCGK-ERTSAMLTVRA 105 (113)
T ss_dssp SCCSTTCEEEEEEETT-EEEEEEEEECC
T ss_pred CCChhhCEEEEEEeCC-CCEEEEEEEeC
Confidence 9999999999999933 33344555553
No 311
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.23 E-value=3.6e-11 Score=77.63 Aligned_cols=89 Identities=22% Similarity=0.241 Sum_probs=58.3
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEec---CCCceEEEEec-ccceEEEEEEecccCCCeEEEEEee
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYS---QRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~---~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
+..+.+..|+.+.|.|.+.+.|.+...+.|++++..+... ........... ....+.|.|.+++.+|+|.|+|.|.
T Consensus 15 ~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 94 (122)
T 3s35_X 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 94 (122)
T ss_dssp CSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence 3445788999999999999966655589999977643210 01010100000 1134689999999999999999999
Q ss_pred cCCC---CeEEEEEec
Q psy3475 155 SSDG---ASVVVHVLN 167 (207)
Q Consensus 155 n~~~---~~~~~~v~~ 167 (207)
|..+ ..+.|.|..
T Consensus 95 n~~g~~~~~~~l~V~~ 110 (122)
T 3s35_X 95 SGLMTKKNSTFVRVHE 110 (122)
T ss_dssp CSSCEEEEEEEEEEEE
T ss_pred cCCCceEEEEEEEEec
Confidence 9843 234455543
No 312
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=98.86 E-value=9.7e-13 Score=91.25 Aligned_cols=109 Identities=20% Similarity=0.192 Sum_probs=69.3
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEecc-
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISK- 73 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~- 73 (207)
|+||||.++..+...++.. ...+||.+..+...+.++|.|.+++.+|+|.|.|.+.+. ........|.|...+
T Consensus 32 v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~fg~gT~L~V~~~~~ 111 (185)
T 3c6l_A 32 FPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIFFGDGTQLVVKPNIQ 111 (185)
Confidence 6899998765444333321 135788876555556789999999999999999998652 112334466665321
Q ss_pred ---ceEecCcceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEE
Q psy3475 74 ---AKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVV 115 (207)
Q Consensus 74 ---~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~ 115 (207)
+.+..+. .....+.|.|.+.+. |.| .|.|..+....
T Consensus 112 ~~~P~V~~~~----~~~~~vtL~C~~~gf~P~p--~v~~~~~~~~~ 151 (185)
T 3c6l_A 112 NPEPAVYQLK----DPRSQDSTLCLFTDFDSQI--NVPKTMESGTF 151 (185)
Confidence 1111111 112278999999996 445 89997655544
No 313
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.22 E-value=4.6e-10 Score=78.10 Aligned_cols=92 Identities=16% Similarity=0.267 Sum_probs=67.3
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ++..... ......|.|.+++.+|+|.|+|
T Consensus 4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~-~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C 79 (197)
T 2j8h_A 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKP--IVKWYRQGKEIIADGL-KYRIQEF-KGGYHQLIIASVTDDDATVYQV 79 (197)
T ss_dssp CCEEEECCCCEEEETTSCEEEEEEEECSSCC--EEEEEETTEECCCCSS-SEEEEEE-TTTEEEEEECSCCGGGCSEEEE
T ss_pred CCEEEEcCCccEEcCCCEEEEEEEEeecCCC--EEEEEECCEECccCCC-cEEEEEc-CCCEEEEEECcCCHHhCEEEEE
Confidence 4555666777888999999999999988777 8999999988764322 2222211 2234589999999999999999
Q ss_pred EeecCC---CCeEEEEEec
Q psy3475 152 APSSSD---GASVVVHVLN 167 (207)
Q Consensus 152 ~~~n~~---~~~~~~~v~~ 167 (207)
.+.|.. .....+.|..
T Consensus 80 ~~~n~~g~~~~~~~l~V~~ 98 (197)
T 2j8h_A 80 RATNQGGSVSGTASLEVEV 98 (197)
T ss_dssp EEEETTEEEEEEEEEEEEE
T ss_pred EEEECCCceeEEEEEEEcC
Confidence 999883 3344555544
No 314
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Probab=99.21 E-value=7.1e-11 Score=83.21 Aligned_cols=100 Identities=26% Similarity=0.300 Sum_probs=66.5
Q ss_pred CeeEEccCCccceeeEEEEe-----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC----C--ceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE----P--KISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~----~--~~~~~~~l~v 69 (207)
|+||||.++..+...++... .++||.+..+...+.++|.|.+++.+|+|.|.|.+.+. . .......|.|
T Consensus 32 v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V 111 (203)
T 2bnu_A 32 LQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIV 111 (203)
T ss_dssp EEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEECSSSTTCCEECCCEEEEE
T ss_pred EEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCcccCeEEEEEEEcCcCcceeeeeCCCEEEEE
Confidence 58999988766555444432 25789887776677899999999999999999999753 1 1224457777
Q ss_pred EeccceEecCcceEE--ecCCcEEEEEEEee-CCCC
Q psy3475 70 VISKAKIIGNSELYI--KSGSDINLTCVVLE-TPDP 102 (207)
Q Consensus 70 ~~~~~~~~~~~~~~~--~~g~~~~l~C~~~~-~~~~ 102 (207)
...... ..+.+.. .....++|.|.+.+ .|.|
T Consensus 112 ~~~~~~--~~P~V~~~~~~~~~~~L~C~~~g~~P~p 145 (203)
T 2bnu_A 112 HPYIQN--PDPAVYQLRRSKSSDKSVCLFTDFDSQT 145 (203)
T ss_dssp ECCCSS--CCCEEEEECCSSSSSCEEEEEESCCTTC
T ss_pred eCCCCC--CCCeEEecCCCCCCcEEEEEccccccCc
Confidence 652110 0011111 12347899999999 4666
No 315
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} SCOP: b.1.1.1
Probab=99.21 E-value=1.6e-12 Score=92.00 Aligned_cols=146 Identities=18% Similarity=0.259 Sum_probs=44.8
Q ss_pred CeeEEccCCccceeeEEEEe-----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC---c--eeeeEEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP---K--ISIGYKLNVV 70 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~--~~~~~~l~v~ 70 (207)
|+||||.++..+...++... .++||.+..+...+.++|.|.+++.+|+|.|.|.+.+.. . ......|.|.
T Consensus 32 v~W~rq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V~ 111 (207)
T 1ymm_D 32 LQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIFGTGTRLKVL 111 (207)
T ss_dssp EEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEEEETTSCSCEEECC-------
T ss_pred EEEEEECCCCCcEEEEEEcCCCccccCCCEEEEEcCCCCEEEEEECcCCcccCceEEEEEEcCCCcceeeECCCEEEEEE
Confidence 58999987655554444332 357888765555567899999999999999999997631 1 2233466665
Q ss_pred eccceEecCcceEE--ecCCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCe
Q psy3475 71 ISKAKIIGNSELYI--KSGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSG 147 (207)
Q Consensus 71 ~~~~~~~~~~~~~~--~~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 147 (207)
...... .| .+.. .....++|.|.+.+. |.+ .+....+ ...... . ... .+...-.+. .+......+..
T Consensus 112 ~~~~~~-~P-~V~~~~~~~~~vtL~C~~~gf~P~p--~v~~~~~-~~~~~t-~--~~~-~~~~~~~S~-t~~~~~w~~~~ 181 (207)
T 1ymm_D 112 ANIQNP-DP-AVYQLRDSKSSDKSVCLFTDFDSQT--NVSQSKD-SDVYIT-D--KTV-LDMRSMDFK-SNSAVAWSNKS 181 (207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCC-CC-EEEecCCCCCCeEEEEEccccccCC--ccccccc-cceeec-C--Cce-ecccccccc-ccchhhcCCCC
Confidence 321100 01 1111 122478999999985 555 4422111 000000 0 000 000011223 44555556778
Q ss_pred EEEEEeecC
Q psy3475 148 NYTCAPSSS 156 (207)
Q Consensus 148 ~Y~C~~~n~ 156 (207)
+|+|.+...
T Consensus 182 ~~tC~V~~~ 190 (207)
T 1ymm_D 182 DFACANAFN 190 (207)
T ss_dssp ---------
T ss_pred ceEEEEEeC
Confidence 999988765
No 316
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.20 E-value=4.8e-10 Score=77.09 Aligned_cols=91 Identities=21% Similarity=0.333 Sum_probs=65.5
Q ss_pred eEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEee
Q psy3475 75 KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 75 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... .....+.......|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~~~p~~~~v~~G~~v~l~C~~~~~p~~--~v~W~k~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 80 (182)
T 1rhf_A 5 LMGAPVKLTVSQGQPVKLNCSVEGMEEP--DIQWVKDGAVVQNLDQ--LYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE 80 (182)
T ss_dssp --CCCEEEEEETTCCEEEEEEEESCSSC--CEEEEETTEECCSSEE--EEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred EEeCCcceEEeCCCcEEEEEEEeCCCCC--eEEEEECCeecCCCCc--eEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence 3445667788899999999999987766 8999999988765432 22222212224789999999999999999999
Q ss_pred cCC----CCeEEEEEecCC
Q psy3475 155 SSD----GASVVVHVLNGK 169 (207)
Q Consensus 155 n~~----~~~~~~~v~~~~ 169 (207)
|.. .....+.+...+
T Consensus 81 ~~~~~~~~~~~~l~V~~~p 99 (182)
T 1rhf_A 81 DGGETEISQPVWLTVEGVP 99 (182)
T ss_dssp SCTTCEECCCEEEEEECSC
T ss_pred cCCCcEEEEEEEEEEecCC
Confidence 973 345566666544
No 317
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.20 E-value=8.5e-10 Score=77.86 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=67.9
Q ss_pred eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEec-ccCCCeEE
Q psy3475 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA-VTSDSGNY 149 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~Y 149 (207)
.+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ............|.|.++ +.+|+|.|
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~--~v~W~k~~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~~d~G~Y 79 (212)
T 2yd6_A 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRP--KIVWNKKGKKVSNQRF---EVIEFDDGSGSVLRIQPLRTPRDEAIY 79 (212)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCC--EEEEEETTEECCCTTE---EEEEEGGGTEEEEEECSCCTTTTCEEE
T ss_pred CCCeEEeCcceeEEecCCeEEEEEEEeeCCCC--EEEEEECCcCCCCCce---eEEEEcCCCceEEEEeccCCCCCCeEE
Confidence 45666667778888999999999999998777 8999999988754321 111111224578999999 59999999
Q ss_pred EEEeecCCC---CeEEEEEec
Q psy3475 150 TCAPSSSDG---ASVVVHVLN 167 (207)
Q Consensus 150 ~C~~~n~~~---~~~~~~v~~ 167 (207)
+|.+.|..+ ....+.|..
T Consensus 80 ~C~a~n~~g~~~~~~~l~V~~ 100 (212)
T 2yd6_A 80 ECVASNNVGEISVSTRLTVLR 100 (212)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEcCCCcEEEEEEEEEec
Confidence 999999833 344555654
No 318
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=2.1e-10 Score=71.72 Aligned_cols=91 Identities=21% Similarity=0.255 Sum_probs=65.2
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
|.+...+....+..|+.+.|.|. .+.+.+ .+.|++++..+....+ +.... ......|.|.+++.+|+|.|+|.
T Consensus 9 p~~~~~~~~~~v~~G~~v~l~C~-~~~p~~--~v~W~k~~~~l~~~~~--~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2dku_A 9 NCFTEELTNLQVEEKGTAVFTCK-TEHPAA--TVTWRKGLLELRASGK--HQPSQ--EGLTLRLTISALEKADSDTYTCD 81 (103)
T ss_dssp CCCSSCCCCEEEETTSEEEEEEE-CSSCCS--CCEEEESSCBCCSSSS--EEEEE--ETTEEEEEEESCCTTTCSEEEEE
T ss_pred CEeEecCCcEEEeCCCcEEEEEE-eCCCCC--eEEEEeCCEECCCCCe--EEEEe--CCCEEEEEECCCCcccCEEEEEE
Confidence 34444566788899999999999 466666 7899999987765443 33322 12455899999999999999998
Q ss_pred eecCCCCeEEEEEecCCcc
Q psy3475 153 PSSSDGASVVVHVLNGKKF 171 (207)
Q Consensus 153 ~~n~~~~~~~~~v~~~~~~ 171 (207)
+.. ......|.|...+.+
T Consensus 82 ~g~-~~~~~~l~V~~~p~~ 99 (103)
T 2dku_A 82 IGQ-AQSRAQLLVQGRRSG 99 (103)
T ss_dssp CSS-CBCCEEEEEECSCCC
T ss_pred eCC-ceEEEEEEEeCccCC
Confidence 333 455677777765443
No 319
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Probab=99.19 E-value=7.5e-11 Score=77.75 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=62.6
Q ss_pred EeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecC--------CCceEEEEec-ccceEEEEEEe
Q psy3475 70 VISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQ--------RGGISVVTEK-QTRTSRLVISK 140 (207)
Q Consensus 70 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~ 140 (207)
..+|.+...+....+..|+.+.|.|.+.+.|.| .+.|++++..+.... ..++...... ......|.|.+
T Consensus 19 ~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p--~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~ 96 (137)
T 3qr2_A 19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVP--EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDT 96 (137)
T ss_dssp --CCEEEECCCCEEEETTSCEEEEEEEECSSCC--EEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECS
T ss_pred CCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCC--eEEEEECCCCccccceeecccCcccceEEecccccccceEEEECC
Confidence 456777777888889999999999999999888 899998665332110 1112211111 22456899999
Q ss_pred cccCCCeEEEEEeecCCCC
Q psy3475 141 AVTSDSGNYTCAPSSSDGA 159 (207)
Q Consensus 141 ~~~~d~g~Y~C~~~n~~~~ 159 (207)
++.+|+|.|+|.+.|..+.
T Consensus 97 v~~~D~G~Y~C~a~N~~G~ 115 (137)
T 3qr2_A 97 LVEEDTGTYECRASNDPDR 115 (137)
T ss_dssp CCGGGCEEEEEEEECCTTS
T ss_pred CCcccCEEEEEEEEecCCc
Confidence 9999999999999998443
No 320
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=76.57 Aligned_cols=68 Identities=22% Similarity=0.485 Sum_probs=55.5
Q ss_pred ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+... ....|.|.++..+|+|.|+|.+
T Consensus 12 ~i~~~p~~~~v~~G~~v~l~C~~~g~p~~--~v~W~k~~~~~~~~-------------~~~~L~i~~v~~~d~G~Y~C~a 76 (96)
T 2ens_A 12 QLVVEPEGGAVAPGGTVTLTCEVPAQPSP--QIHWMKDGVPLPLP-------------PSPVLILPEIGPQDQGTYSCVA 76 (96)
T ss_dssp CCEEESTTSEECTTCEEEEECCCSSCSSC--CCCCEESSSBCSSC-------------CCSEEEEESCCTTTCEEEECEE
T ss_pred EEEECCCCCEEcCCCeEEEEEEEccCCCC--EEEEEECCEECcCC-------------CCCEEEECCCCcccCEEEEEEE
Confidence 34445666778899999999999988777 78999988766432 2357999999999999999999
Q ss_pred ecC
Q psy3475 154 SSS 156 (207)
Q Consensus 154 ~n~ 156 (207)
.|.
T Consensus 77 ~n~ 79 (96)
T 2ens_A 77 THS 79 (96)
T ss_dssp CCS
T ss_pred EeC
Confidence 995
No 321
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.18 E-value=3.7e-10 Score=79.91 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=78.1
Q ss_pred CeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeC--
Q psy3475 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLET-- 99 (207)
Q Consensus 23 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-- 99 (207)
.++.+.... ....|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|....... . ...+..+.|.|.....
T Consensus 65 ~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~-~-~~~~~~~~l~w~~p~~~~ 140 (215)
T 3mtr_A 65 SNIKIYNTP--SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQ-V-EPYSSTAQVQFDEPEATG 140 (215)
T ss_dssp CSEEEEEET--TEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCCCEEEE-E-EEETTEEEEEEECCSCCC
T ss_pred ccEEEecCC--CeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCCCcceE-E-EEecceEEEEEecCCccC
Confidence 455544322 3568999999999999999999984 4456667777766553221111 1 2346678888874332
Q ss_pred CCCC--cEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 100 PDPP--SFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 100 ~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
..+. ..+.|..++....... ............+.|.++...+.+.|.|.|.|..+
T Consensus 141 ~~pi~~y~v~~~~~~~~~w~~~----~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G 197 (215)
T 3mtr_A 141 GVPILKYKAEWRAVGEEVWHSK----WYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKG 197 (215)
T ss_dssp SSCEEEEEEEEEETTCCCCEEE----EEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSC
T ss_pred CCceEEEEEEEEECCCCccccc----ccccccccccccEEECCCCCCCEEEEEEEEEeCCc
Confidence 1121 1367777654321110 00000011225799999999999999999999833
No 322
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Probab=99.18 E-value=1.3e-10 Score=82.60 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=66.1
Q ss_pred CeeEEccCCccceeeEEEEe-----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-Cc--eeeeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PK--ISIGYKLNVVIS 72 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~--~~~~~~l~v~~~ 72 (207)
|+||||.++..+...++... .++||++..+...+.++|.|.+++.+|+|.|.|.+... .. ......|.|...
T Consensus 32 v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~fg~gt~L~V~~~ 111 (215)
T 1oga_D 32 LQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSVKPN 111 (215)
T ss_dssp EEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECTTSSEEECCCEEEEEECC
T ss_pred EEEEEeCCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEecccccceeCCCEEEEEecc
Confidence 58999988766655444432 25889988777778899999999999999999999753 11 223457777643
Q ss_pred cceEecCcceEE--ecCCcEEEEEEEeeC-CCC
Q psy3475 73 KAKIIGNSELYI--KSGSDINLTCVVLET-PDP 102 (207)
Q Consensus 73 ~~~~~~~~~~~~--~~g~~~~l~C~~~~~-~~~ 102 (207)
... ..+.+.+ ..+..++|.|.+.+. |.+
T Consensus 112 ~~~--~~P~V~~~~~~~~~vtL~C~~~gf~P~p 142 (215)
T 1oga_D 112 IQN--PDPAVYQLRDSKSSDKSVCLFTDFDSQT 142 (215)
T ss_dssp CSS--CCCEEEEEEBSSSSSCEEEEEESCCTTC
T ss_pred CCC--cCCEEEEcCCCCCCeEEEEEccccccCc
Confidence 210 0111111 123478999999995 444
No 323
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Probab=99.17 E-value=1.7e-10 Score=81.77 Aligned_cols=146 Identities=17% Similarity=0.238 Sum_probs=84.7
Q ss_pred CeeEEccCCccceeeEEEEe------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-----ceeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-----KISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v 69 (207)
|+||||.++..+...++... .++||.+..+...+.++|.|.+++.+|+|.|.|.+.+.. .......|.|
T Consensus 36 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V 115 (211)
T 2ak4_D 36 LFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQV 115 (211)
T ss_dssp EEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEECSBTTSCCEECCCEEEEE
T ss_pred EEEEEECCCCccEEEEEECCCcCccCcCCCEEEEEcCCCCEEEEEECccccccCceEEEEEEcCCCcceeeECCCEEEEE
Confidence 58999988766655444332 247898877777788999999999999999999997531 1223457777
Q ss_pred EeccceEecCcceEEe--cCCcEEEEEEEeeC-CCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCC
Q psy3475 70 VISKAKIIGNSELYIK--SGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146 (207)
Q Consensus 70 ~~~~~~~~~~~~~~~~--~g~~~~l~C~~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 146 (207)
...... ..+.+... ....++|.|.+.+. |.+ .+....+.... . .. .... +...-.+. .+......+.
T Consensus 116 ~~~~~~--~~P~V~~~~~~~~~vtL~Cl~~gf~P~~--~v~~~~~~~~~-~-t~--~~~~-~~~~~~S~-t~~~~~w~~g 185 (211)
T 2ak4_D 116 FPNIQN--PDPAVYQLRDSKSSDKSVCLFTDFDSQT--NVSQSKDSDVY-I-TD--KCVL-DMRSMDFK-SNSAVAWSNK 185 (211)
T ss_dssp ECCCSS--CCCEEEEEBCCSSSCCEEEEEESCCTTC--CCCCCSSSSCE-E-CC--CEEE-EEGGGTEE-EEEEEEEECS
T ss_pred eCcCCC--CCCEEEEccCCCCceEEEEEeeeecCCc--ccccccccceE-e-cC--chhc-cccccccc-cccHHHccCC
Confidence 642110 01111111 23478999999995 444 44111110000 0 00 0010 11112233 5566666777
Q ss_pred eEEEEEeecC
Q psy3475 147 GNYTCAPSSS 156 (207)
Q Consensus 147 g~Y~C~~~n~ 156 (207)
.+|+|.+...
T Consensus 186 ~~~tC~V~~~ 195 (211)
T 2ak4_D 186 SDFACANAFN 195 (211)
T ss_dssp TTCCTTSTTT
T ss_pred CceEEEEecC
Confidence 8999988765
No 324
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.16 E-value=1.9e-10 Score=72.21 Aligned_cols=77 Identities=18% Similarity=0.278 Sum_probs=57.1
Q ss_pred cceEecCcc-eEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEec-CCCceEEEEecccceEEEEEEecccCCCeEEE
Q psy3475 73 KAKIIGNSE-LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYS-QRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 73 ~~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 150 (207)
|.++..+.. ..+..|+.+.|.|.+ +.|.+ .+.|+++|..+..+ .+ +....+ .....|.|.+++.+|+|.|+
T Consensus 16 p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~--~v~W~k~g~~l~~~~~~--~~~~~~--~~~~~L~I~~v~~~D~G~Y~ 88 (104)
T 1pd6_A 16 TAFQKKLEPAYQVSKGHKIRLTVEL-ADHDA--EVKWLKNGQEIQMSGSK--YIFESI--GAKRTLTISQCSLADDAAYQ 88 (104)
T ss_dssp SSCSEECCSEEEEETTSCEEEEEEC-SSSSS--CCEEEESSSEECCCSSS--SEEEEE--TTEEEEEECSCSSSSCEEEE
T ss_pred CEEEEcCCCcEEEecCCCEEEEEEE-cCCCC--EEEEEECCEECCCCCCe--EEEEec--CCEEEEEECCCCcccCEEEE
Confidence 333334444 678899999999999 66666 69999999988765 33 333322 23568999999999999999
Q ss_pred EEeecC
Q psy3475 151 CAPSSS 156 (207)
Q Consensus 151 C~~~n~ 156 (207)
|.+.+.
T Consensus 89 C~a~~~ 94 (104)
T 1pd6_A 89 CVVGGE 94 (104)
T ss_dssp EEETTE
T ss_pred EEECCC
Confidence 999664
No 325
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.16 E-value=1.5e-10 Score=71.26 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=56.0
Q ss_pred EecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeec
Q psy3475 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155 (207)
Q Consensus 76 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n 155 (207)
...+....+..|+.+.|.|.+ +.+.+ .+.|++++..+..+.+ +....+ .....|.|.+++.+|+|.|+|.+.+
T Consensus 12 ~~~~~~~~v~~G~~v~l~C~~-~~p~~--~v~W~k~~~~l~~~~~--~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~ag~ 84 (95)
T 2k1m_A 12 SKKPRSVEVAAGSPAVFEAET-ERAGV--KVRWQRGGSDISASNK--YGLATE--GTRHTLTVREVGPADQGSYAVIAGS 84 (95)
T ss_dssp SBCCCCEEEETTSCEEEEEEC-SSSSC--CCEEECSSSEECSSTT--CEEEEE--TTEEEEEESSCCTTCCSEEEEEETT
T ss_pred EeCCCcEEEeCCCcEEEEEEe-CCCCC--eEEEEECCEECCCCCc--EEEEEc--CCEEEEEEcCCCcccCEEEEEEECC
Confidence 344667788999999999999 65655 7899999988765443 333322 2356899999999999999999944
No 326
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=99.16 E-value=6.2e-11 Score=73.45 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=51.9
Q ss_pred CcceEEecCCcEEEEEEEe-eCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 79 NSELYIKSGSDINLTCVVL-ETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
+....+..|+.+.|.|.+. +.|.+ .+.|++++....... . .. ....|.|.+++.+|+|.|+|.+.|..
T Consensus 17 ~~~~~v~~G~~v~l~C~~~~~~p~~--~v~W~k~~~~~~~~~---~-~~-----~~~~L~i~~v~~~D~G~Y~C~a~n~~ 85 (98)
T 1gl4_B 17 QRSQSVRPGADVTFICTAKSKSPAY--TLVWTRLHNGKLPSR---A-MD-----FNGILTIRNVQPSDAGTYVCTGSNMF 85 (98)
T ss_dssp CCEEEECTTCCEEEEEEEEESSSCC--EEEEEEGGGBCCCTT---E-EE-----ETTEEEECSCCGGGCEEEEEEEECSS
T ss_pred CCCeEEecCCCEEEEEeCCCCCCCc--EEEEEeCCCCCCCce---e-ec-----CCCEEEEeCCChhhCEEEEEEecCCC
Confidence 4566788999999999998 46666 899998643322111 1 11 23479999999999999999999984
Q ss_pred CC
Q psy3475 158 GA 159 (207)
Q Consensus 158 ~~ 159 (207)
+.
T Consensus 86 g~ 87 (98)
T 1gl4_B 86 AM 87 (98)
T ss_dssp CE
T ss_pred Cc
Confidence 43
No 327
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.16 E-value=2.9e-10 Score=80.41 Aligned_cols=83 Identities=20% Similarity=0.353 Sum_probs=59.8
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+....................|.|.+++.+|+|.|+|
T Consensus 9 ~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C 86 (217)
T 2vr9_A 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEP--TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86 (217)
T ss_dssp CCEEEECCCCEEECTTSCEEECCEEECSSCC--EEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred CCEEecCCCceEEeCCCcEEEEEEcCCCCCC--eEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence 4555566777888999999999999987777 89999999987654322222222111112234678889999999999
Q ss_pred EeecC
Q psy3475 152 APSSS 156 (207)
Q Consensus 152 ~~~n~ 156 (207)
.+.|.
T Consensus 87 ~~~n~ 91 (217)
T 2vr9_A 87 VAKNR 91 (217)
T ss_dssp EEEET
T ss_pred EEecC
Confidence 99987
No 328
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.16 E-value=2e-09 Score=75.64 Aligned_cols=78 Identities=19% Similarity=0.424 Sum_probs=54.2
Q ss_pred EEecCCcEEEEEEEeeCCCCCcEEEEEeCC-EEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC---C
Q psy3475 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGA-NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD---G 158 (207)
Q Consensus 83 ~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~---~ 158 (207)
.+.+|+.+.|.|.+.+.|.| .+.|++.. ..+ ..... . ......|.|.+++.+|+|.|+|.+.|.. +
T Consensus 12 ~~~~G~~v~L~C~~~g~P~p--~i~W~~~~~~~~----~~~~~--~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~ 81 (202)
T 1vca_A 12 LAQIGDSVSLTCSTTGCESP--FFSWRTQIDSPL----NGKVT--N--EGTTSTLTMNPVSFGNEHSYLCTATCESRKLE 81 (202)
T ss_dssp EEETTSCEEEEEEEESCSSC--EEEEEETTCCCC----SSEEE--E--ETTEEEEEESSCCGGGCSEEEEEEEETTEEEE
T ss_pred EEcCCCcEEEEEeecCCCCC--eEEEECCCCCCc----cceEE--E--cCCccEEEECcCCHHHCEEEEEEEEECCceEe
Confidence 34589999999999998877 79998732 111 01111 1 1134579999999999999999999983 3
Q ss_pred CeEEEEEecCCc
Q psy3475 159 ASVVVHVLNGKK 170 (207)
Q Consensus 159 ~~~~~~v~~~~~ 170 (207)
..+.|.|...+.
T Consensus 82 ~~~~l~V~~~p~ 93 (202)
T 1vca_A 82 KGIQVEIYSFPK 93 (202)
T ss_dssp EEEEEEEEBCCS
T ss_pred eEEEEEEEeCCC
Confidence 345666665443
No 329
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=7.1e-11 Score=75.49 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=57.0
Q ss_pred eEecCcceEEecCCcEEEEEEEeeC---CCCCcEEEEEeCCE-EEEecCCCceEEEE--ec--ccceEEEEEEecccCCC
Q psy3475 75 KIIGNSELYIKSGSDINLTCVVLET---PDPPSFIYWYRGAN-VVNYSQRGGISVVT--EK--QTRTSRLVISKAVTSDS 146 (207)
Q Consensus 75 ~~~~~~~~~~~~g~~~~l~C~~~~~---~~~~~~~~W~~~~~-~~~~~~~~~~~~~~--~~--~~~~~~l~i~~~~~~d~ 146 (207)
++..|.++.+.+|+.+.|.|.+.+. |.| .|.|+++.. .+......++.... ++ ......|.|.++...|+
T Consensus 15 f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P--~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 92 (118)
T 2edn_A 15 FLKKPDSVSVETGKDAVVVAKVNGKELPDKP--TIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDR 92 (118)
T ss_dssp CSBCCCCCEEETTSCEECCEEEETTTSSSCC--CCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTC
T ss_pred EEECCCCeEEeCCCCEEEEEEEeccCCCCCC--cEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhC
Confidence 3445778889999999999999885 456 899999742 11111112222221 11 11257899999999999
Q ss_pred eEEEEEeecCCC
Q psy3475 147 GNYTCAPSSSDG 158 (207)
Q Consensus 147 g~Y~C~~~n~~~ 158 (207)
|.|+|.+.|..+
T Consensus 93 G~Y~Cevsn~~g 104 (118)
T 2edn_A 93 GYYRLEVKAKDT 104 (118)
T ss_dssp SCEEEEEECSSC
T ss_pred EEEEEEEEEcCC
Confidence 999999999844
No 330
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...
Probab=99.14 E-value=1.9e-10 Score=82.46 Aligned_cols=100 Identities=18% Similarity=0.276 Sum_probs=65.8
Q ss_pred CeeEEccCCccceeeEEEEe-----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC--ceeeeEEEEEEecc
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVISK 73 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~ 73 (207)
|+||||.++..+...++... .++||++..+...+.++|+|.+++.+|+|.|.|.+.+.. .......|.|....
T Consensus 33 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~g~gt~L~V~~~~ 112 (229)
T 2q86_A 33 LRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIVIPYI 112 (229)
T ss_dssp EEEEEECTTCCEEEEEEECSSEEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGGCEECCCEEEEEECCC
T ss_pred EEEEEECCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEcccCcccCccEEEEEEecCcccccCCEEEEEECcC
Confidence 58999988766654443322 257898877777788999999999999999999987532 22344577776421
Q ss_pred ceEecCcceEE--ecCCcEEEEEEEeeC-CCC
Q psy3475 74 AKIIGNSELYI--KSGSDINLTCVVLET-PDP 102 (207)
Q Consensus 74 ~~~~~~~~~~~--~~g~~~~l~C~~~~~-~~~ 102 (207)
.. ..+.+.. .....++|.|.+.+. |.+
T Consensus 113 ~~--~~P~V~~~~~~~~~~tL~Cl~~gf~P~p 142 (229)
T 2q86_A 113 QN--PEPAVYQLKDPRSQDSTLCLFTDFDSQI 142 (229)
T ss_dssp SS--CCCEEEEEECTTSTTCEEEEEEEECTTC
T ss_pred CC--CCCEEEEccCCCCCeEEEEEECCcCcCC
Confidence 10 0111111 123378999999985 555
No 331
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Probab=99.14 E-value=2.4e-10 Score=80.69 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=65.7
Q ss_pred CeeEEccCCccceeeEEEEe---CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-----C--ceeeeEEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT---NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-----P--KISIGYKLNVV 70 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-----~--~~~~~~~l~v~ 70 (207)
|+||||.++..+....+... .++||.+..+...+.++|.|.+++.+|+|.|.|.+.+. . .......|.|.
T Consensus 32 v~Wyrq~~g~~~~~l~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~g~gt~L~V~ 111 (206)
T 1kgc_D 32 IHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVH 111 (206)
T ss_dssp EEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECCCCSTTCCCCCCCCCCEEEEEE
T ss_pred EEEEEECCCCCcEEEEEECCCCccCCCEEEEEcCCCCEEEEEECCCCcccCccEEEEEecccCCCcccceECCCEEEEEe
Confidence 58999988766554443322 15899988777778899999999999999999998752 1 12244577776
Q ss_pred eccceEecCcceEEe--cCCcEEEEEEEeeC-CCC
Q psy3475 71 ISKAKIIGNSELYIK--SGSDINLTCVVLET-PDP 102 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~--~g~~~~l~C~~~~~-~~~ 102 (207)
..+.. ..+.+... ..+.++|.|.+.+. |.+
T Consensus 112 ~~~~~--~~P~V~~~~~~~~~v~L~C~~~g~~P~~ 144 (206)
T 1kgc_D 112 PNIQN--PDPAVYQLRDSKSSDKSVCLFTDFDSQT 144 (206)
T ss_dssp CCCSS--CCCEEEECCCCTTCCCEEEEEESCCTTC
T ss_pred CCCCC--CCCeEEeecCCCCCeEEEEEeeceeccc
Confidence 42210 01111111 12478999999986 444
No 332
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.14 E-value=2.7e-09 Score=75.21 Aligned_cols=94 Identities=19% Similarity=0.330 Sum_probs=69.3
Q ss_pred eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEeccc-CCCeEE
Q psy3475 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT-SDSGNY 149 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y 149 (207)
.+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.... .++..... ......|.|.++.. +|+|.|
T Consensus 5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~--~v~W~~~~~~~~~~~-~~~~~~~~-~~~~~~L~i~~v~~~~d~G~Y 80 (212)
T 2yd1_A 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPP--SIVWRKNGKKVSGTQ-SRYTVLEQ-PGGISILRIEPVRAGRDDAPY 80 (212)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCC--EEEEEETTEECCTTS-TTEEEEEE-TTTEEEEEESSCCTTTTCSEE
T ss_pred CCCEEEcCCCceEEecCCEEEEEEEEccCCCC--eEEEEECCEECCCCc-ceeEEEEc-CCCeEEEEEEecCCCCcCceE
Confidence 35666667778889999999999999998777 899999998876322 22333221 12347899999999 999999
Q ss_pred EEEeecCCCC----eEEEEEecC
Q psy3475 150 TCAPSSSDGA----SVVVHVLNG 168 (207)
Q Consensus 150 ~C~~~n~~~~----~~~~~v~~~ 168 (207)
+|.+.|..+. ...+.|...
T Consensus 81 ~C~~~n~~g~~~~~~~~l~V~~~ 103 (212)
T 2yd1_A 81 ECVAENGVGDAVSADATLTIYEG 103 (212)
T ss_dssp EEEEECSSSCEEEEEEEEEEECT
T ss_pred EEEEEeCCCCeEEeeEEEEEecc
Confidence 9999998443 345555543
No 333
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}
Probab=99.13 E-value=1.1e-09 Score=88.38 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=74.3
Q ss_pred EEEEcccCCCCCeEEEEEEecCCc---eeeeEEEEE--EeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC
Q psy3475 37 TLKIASSQLRDSGTYECQVSTEPK---ISIGYKLNV--VISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111 (207)
Q Consensus 37 ~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~ 111 (207)
.|.|......|.+.|+|.+.+... ....+.+.+ ..+|.+...+.......|+.++|.|.+.+..++.+.|.|+++
T Consensus 409 ~L~i~~~~~~~~~~y~C~v~~~~~~~~~~~~~~~~~~~~~~P~V~~~~~~~~~~~~~~~~L~C~v~gfyP~~i~v~W~k~ 488 (551)
T 1ntl_A 409 ELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWN 488 (551)
T ss_pred eeEcCHHHccCCceEEEEEecCCCCCCeEEEEecCCCCCcCCceEEeCCChhhccCCceEEEEEEEEeECCCCEEEEEEC
Confidence 688888888889999999986322 233333332 344544333332334468899999999997666679999999
Q ss_pred CEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 112 ANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|..+............++ ....+.|.+......+.+.|+|.|.+.
T Consensus 489 g~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~~~~ytC~V~h~ 534 (551)
T 1ntl_A 489 GQPAENYKNTQPIMNTNGSYFVYSKLNVQKSNWEAGNTFTCSVLHE 534 (551)
T ss_pred CEEccCceeccceeCCCCCEEEEEEEEEcHHHcCCCCeEEEEEEEC
Confidence 987642111111101011 112234666555555688999999987
No 334
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}
Probab=99.13 E-value=2.2e-10 Score=72.91 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=50.8
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEecc
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISK 73 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~ 73 (207)
|.|||+.++..+....... ..++|+.+..+...+.++|+|.+++.+|+|.|.|.+.+.+ .....+.|.|..+|
T Consensus 34 v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~p 112 (113)
T 1zox_A 34 KYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVP 112 (113)
T ss_dssp EEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCSSSCCEEEEEEEEECC-
T ss_pred EEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHCEEEEEeeEcCCCCccEEEEEEEEcCC
Confidence 5899987654333222211 1247888876666678899999999999999999998643 34566677775443
No 335
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=99.13 E-value=2.7e-10 Score=71.21 Aligned_cols=87 Identities=24% Similarity=0.391 Sum_probs=62.3
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
|.+...+....+..|+.+.|.|.+.+.+.+ +.|++++..+....+ +....+ .....|.|.+++.+|+|.|+|.
T Consensus 9 p~~~~~~~~~~v~~G~~v~l~C~~~~~p~~---v~W~k~~~~l~~~~~--~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2e7b_A 9 VRFQEALKDLEVLEGGAATLRCVLSSVAAP---VKWCYGNNVLRPGDK--YSLRQE--GAMLELVVRNLRPQDSGRYSCS 81 (103)
T ss_dssp CCCTBCCCCEEEESSSCEEEEEECSSCCCS---CEEEESSSBCCCSSS--EEEEEC--SSEEEEEECSCCTTTCCCEEEE
T ss_pred CEEEecCccEEEECCCcEEEEEEEeCCCCC---eEEEECCEECCCCCc--EEEEEc--CCEEEEEEccCCcccCEEEEEE
Confidence 444445667888999999999999887655 899999887754433 333332 2456799999999999999998
Q ss_pred eecCCCCeEEEEEec
Q psy3475 153 PSSSDGASVVVHVLN 167 (207)
Q Consensus 153 ~~n~~~~~~~~~v~~ 167 (207)
+.+. .....+.|..
T Consensus 82 ~g~~-~~~~~l~V~~ 95 (103)
T 2e7b_A 82 FGDQ-TTSATLTVTA 95 (103)
T ss_dssp CSSC-BCCBCEEEEC
T ss_pred ECCc-EEEEEEEEEe
Confidence 5443 4445555553
No 336
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.12 E-value=2.9e-09 Score=73.62 Aligned_cols=80 Identities=29% Similarity=0.374 Sum_probs=60.1
Q ss_pred ceEecCcceEEecCCcEEEEEEEeeCC-CCCcEEEEEe-CCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 74 AKIIGNSELYIKSGSDINLTCVVLETP-DPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
.+...+....+..|+.+.|.|.+.+.+ .+ .+.|++ ++..+..... ++..... ......|.|.++..+|+|.|+|
T Consensus 4 ~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~--~v~W~~~~g~~~~~~~~-~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C 79 (191)
T 1epf_A 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDK--DISWFSPNGEKLSPNQQ-RISVVWN-DDDSSTLTIYNANIDDAGIYKC 79 (191)
T ss_dssp CEEEESSSEEEETTCCEEEEEEECCCSCCC--EEEEECTTSCEECCBSS-SEEEEEE-ETTEEEEEECSCCGGGCEEEEE
T ss_pred EEEecCCCcEEcCCCCEEEEEECCCCCCCc--eEEEEeCCCccccCCCC-eEEEEEC-CCCceEEEEccCCcccCEEEEE
Confidence 344556777888999999999999876 44 899999 8877764322 2332211 1346789999999999999999
Q ss_pred EeecCC
Q psy3475 152 APSSSD 157 (207)
Q Consensus 152 ~~~n~~ 157 (207)
.+.|..
T Consensus 80 ~~~~~~ 85 (191)
T 1epf_A 80 VVTAED 85 (191)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 999984
No 337
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}
Probab=99.12 E-value=3.3e-10 Score=73.36 Aligned_cols=86 Identities=16% Similarity=0.351 Sum_probs=58.8
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEe------cCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNY------SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
+..+.+..|+.+.|.|.+.+.+.+ .+.|++.+..+.. ....++..... ......|.|.+++.+|+|.|+|.
T Consensus 8 ~~~~~v~~G~~v~L~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~ 84 (124)
T 3rbg_A 8 TETITVEEGQTLTLKCVTSLRKNS--SLQWLTPSGFTIFLNEYPVLKNSKYQLLHH-SANQLSITVPNVTLQDEGVYKCL 84 (124)
T ss_dssp EEEEEEETTSCEEEEEECCCCTTC--EEEEECTTSCEEEETTEECSCSSCCEEEEE-ETTEEEEEESSCCGGGCEEEEEE
T ss_pred CccEEEcCCCCEEEEeEEeccCCC--EEEEECCCCeEEEEeccccccCCcEEEEeC-CCCEEEEEECCCChHHCEEEEEE
Confidence 456678899999999999988777 8999975443221 12223333221 22457899999999999999999
Q ss_pred eecC--CCCeEEEEEec
Q psy3475 153 PSSS--DGASVVVHVLN 167 (207)
Q Consensus 153 ~~n~--~~~~~~~~v~~ 167 (207)
+.|. ....+.|.|..
T Consensus 85 a~n~g~~~~~~~l~V~~ 101 (124)
T 3rbg_A 85 HYSDSVSTKEVKVIVLA 101 (124)
T ss_dssp EESSSEEEEEEEEEEEC
T ss_pred EEcCCCCcEEEEEEEEe
Confidence 9997 22233444443
No 338
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Probab=99.11 E-value=1.5e-10 Score=80.91 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=64.1
Q ss_pred CeeEEccCCccceeeEEEEe-----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC----Cc--eeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE----PK--ISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~----~~--~~~~~~l~v 69 (207)
|+||||.++..+...++... .++||.+..+...+.++|.|.+++.+|+|.|.|.+.+. .. ......|.|
T Consensus 33 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V 112 (194)
T 1lp9_E 33 LFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSV 112 (194)
T ss_dssp EEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEECSSSSCEEEECCCEEEEE
T ss_pred EEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEEEcccCcccCeeEEEEEecccCCcceeeeccCceEEe
Confidence 58999987766554333221 25788887665556789999999999999999999752 11 223457777
Q ss_pred EeccceEecCcceEEe--cCCcEEEEEEEeeC-CCC
Q psy3475 70 VISKAKIIGNSELYIK--SGSDINLTCVVLET-PDP 102 (207)
Q Consensus 70 ~~~~~~~~~~~~~~~~--~g~~~~l~C~~~~~-~~~ 102 (207)
...+.. ..+.+... ....++|.|.+.+. |.+
T Consensus 113 ~~~~~~--~~P~V~~~~~~~~~~tL~Cl~~gf~P~~ 146 (194)
T 1lp9_E 113 VPNIQN--PEPAVYQLKDPRSQDSTLCLFTDFDSQI 146 (194)
T ss_dssp ECCCSS--CCCEEEEEECTTSSSCEEEEEESCCTTS
T ss_pred cCcCCC--CCCeeEecCCCCCCcEEEEEeecccCCc
Confidence 642110 01111111 12468999999995 555
No 339
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.10 E-value=2e-09 Score=74.56 Aligned_cols=82 Identities=18% Similarity=0.361 Sum_probs=60.2
Q ss_pred cCcceEEec-CCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 78 GNSELYIKS-GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 78 ~~~~~~~~~-g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.+....+.. |+.+.|.|.+.+.+.+...+.|++++..+..... ......|.|.+++.+|+|.|+|.+.|.
T Consensus 8 ~~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~---------~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 78 (190)
T 2wv3_A 8 TSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK---------NASNMEYRINKPRAEDSGEYHCVYHFV 78 (190)
T ss_dssp ECCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCB---------CCSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred ccceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccce---------EeccEEEEEecCCcccCEEEEEEEEeC
Confidence 344555556 9999999999998763338999999987754322 124578999999999999999999987
Q ss_pred --CCCeEEEEEecC
Q psy3475 157 --DGASVVVHVLNG 168 (207)
Q Consensus 157 --~~~~~~~~v~~~ 168 (207)
......+.+...
T Consensus 79 ~~~~~~~~l~V~~~ 92 (190)
T 2wv3_A 79 SAPKANATIEVKAA 92 (190)
T ss_dssp TEEEEEEEEEEECC
T ss_pred CcccccEEEEEecC
Confidence 222345555543
No 340
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.09 E-value=1.6e-09 Score=76.27 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=63.2
Q ss_pred ceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
.+...+....+.+|+.+.|.|.+.+.+.+. .+.|++++..+... ...|.|.+++.+|+|.|+|.+
T Consensus 9 ~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~-~v~W~k~g~~l~~~--------------~~~L~i~~v~~~D~G~Y~C~a 73 (204)
T 3sgj_C 9 VVFLEPQWYRVLEKDSVTLKCQGAYSPEDQ-STQWFHNESLISSQ--------------ASSYFIDAATVDDSGEYRCQT 73 (204)
T ss_dssp EEEEESCCSEEETTCCEEEEEECCSSSSCC-CEEEEETTEEESCC--------------SSEEEESSCCGGGCEEEEEEE
T ss_pred eEEEcCCCeEEECCCCEEEEEcCCCCCCCc-EEEEEECCEEcccC--------------ccEEEEecccccCCEEEEEEe
Confidence 344445557788999999999999977552 49999999877432 258999999999999999999
Q ss_pred ecC-CCCeEEEEEecCC
Q psy3475 154 SSS-DGASVVVHVLNGK 169 (207)
Q Consensus 154 ~n~-~~~~~~~~v~~~~ 169 (207)
.|. .+..+.+.|...+
T Consensus 74 ~n~~~s~~~~l~V~~~p 90 (204)
T 3sgj_C 74 QLSTLSDPVQLEVHIGW 90 (204)
T ss_dssp TTSBCCCCEEEEEECSS
T ss_pred CCCcccccEEEEEecCc
Confidence 987 5566777776543
No 341
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=99.09 E-value=1.9e-10 Score=72.50 Aligned_cols=87 Identities=17% Similarity=0.287 Sum_probs=61.6
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+|.+...+....+..|+.+.|.|.+.+. | .+.|++++..+....+ +....+ .....|.|.+++.+|+|.|+|
T Consensus 8 pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p--~v~W~k~~~~~~~~~~--~~~~~~--~~~~~L~I~~v~~~D~G~Y~C 79 (108)
T 2dm7_A 8 PARFTQDLKTKEASEGATATLQCELSKV--A--PVEWKKGPETLRDGGR--YSLKQD--GTRCELQIHDLSVADAGEYSC 79 (108)
T ss_dssp CCCBCSCCBCCEEETTSCEEEEEEBSSS--C--CCEEESSSSBCCSSSS--CEEEEE--TTEEEEEESSCCTTTCSEEEE
T ss_pred CCeeeecCCcEEEeCCCcEEEEEEeCCC--C--eeEEEECCEECCCCCC--EEEEec--CCEEEEEECCCCcccCEEEEE
Confidence 3444445667788899999999999764 4 6799999887654433 333322 245679999999999999999
Q ss_pred EeecCCCCeEEEEEec
Q psy3475 152 APSSSDGASVVVHVLN 167 (207)
Q Consensus 152 ~~~n~~~~~~~~~v~~ 167 (207)
.+.|. .....+.|..
T Consensus 80 ~a~n~-~~~~~l~V~~ 94 (108)
T 2dm7_A 80 MCGQE-RTSATLTVRA 94 (108)
T ss_dssp EETTE-EEEEECEEEC
T ss_pred EEcCC-EEEEEEEEec
Confidence 99764 3344455543
No 342
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.09 E-value=2.2e-09 Score=79.74 Aligned_cols=92 Identities=17% Similarity=0.289 Sum_probs=67.3
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ++..... ......|.|.+++.+|+|.|+|
T Consensus 4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~--~v~W~~~~~~~~~~~~-~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C 79 (305)
T 2nzi_A 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKP--IVKWYRQGKEIIADGL-KYRIQEF-KGGYHQLIIASVTDDDATVYQV 79 (305)
T ss_dssp CCEEEECCCCEEECTTCCEEEEEEEECSSCC--EEEEEETTEECCCCSS-SEEEEEE-TTTEEEEEESSCCGGGCSEEEE
T ss_pred CCeeeecccceEEeCCCcEEEEEEEeCCCCC--eEEEEECCEEcccCCC-eEEEEEC-CCCEEEEEEccCChhhCeEEEE
Confidence 4556666778889999999999999998777 8999999988764322 2222211 1234689999999999999999
Q ss_pred EeecCCC---CeEEEEEec
Q psy3475 152 APSSSDG---ASVVVHVLN 167 (207)
Q Consensus 152 ~~~n~~~---~~~~~~v~~ 167 (207)
.+.|..+ ....+.|..
T Consensus 80 ~a~n~~g~~~~~~~l~V~~ 98 (305)
T 2nzi_A 80 RATNQGGSVSGTASLEVEV 98 (305)
T ss_dssp EEEETTEEEEEEEEEEECE
T ss_pred EEEcCCCCccceEEEEEec
Confidence 9999833 234454443
No 343
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=99.08 E-value=4e-10 Score=69.30 Aligned_cols=69 Identities=20% Similarity=0.405 Sum_probs=54.1
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 157 (207)
.+....+..|+.+.|.|.+.+ .| .+.|++++..+....+ +.. ....|.|.++..+|+|.|+|.+.|..
T Consensus 7 ~p~~~~v~~G~~~~l~C~~~~--~p--~v~W~k~g~~~~~~~~--~~~------~~~~L~i~~~~~~D~G~Y~C~a~n~~ 74 (95)
T 4hwu_A 7 QPEAYVVAPGESLELQCMLKD--AA--VISWTKDGVHLGPNNR--TVL------IGEYLQIKGATPRDSGLYACTAARTV 74 (95)
T ss_dssp -CEEEEECTTSCEEEECCCCT--TC--EEEEEETTEEECCCSS--EEE------ETTEEEECSCCGGGCEEEEEEEECSS
T ss_pred CCCcEEECCCCEEEEEEEeCC--CC--EEEEEECCEECCCCce--EEE------eCCEEEECcCCcccCEEEEEEEccCC
Confidence 355667889999999999886 45 8999999998865433 221 13479999999999999999999984
Q ss_pred C
Q psy3475 158 G 158 (207)
Q Consensus 158 ~ 158 (207)
+
T Consensus 75 g 75 (95)
T 4hwu_A 75 D 75 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 344
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.08 E-value=1.4e-09 Score=76.68 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=72.6
Q ss_pred eEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC---C
Q psy3475 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD---G 158 (207)
Q Consensus 82 ~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~---~ 158 (207)
+.+..|++++|.|.+ +.|.|...|.|.+.+..+ .+... ......|.|.+++.+|+|.|.|.+.|.. .
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l-----~~~~~----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 86 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL-----GAVQS----DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQ 86 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT-----CCEEE----ESSEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc-----CcEEe----cCCccEEEECccCcccCceEEEEEEeCCCceE
Confidence 578899999999999 877665489999844222 11111 1245789999999999999999999983 3
Q ss_pred CeEEEEEecCCcccceeeecccccceeeeeeeeeEEecCcc--eEEEeec
Q psy3475 159 ASVVVHVLNGKKFNKLSSLRGRVGITLKFALRRSRVRFPEE--SIFFAWS 206 (207)
Q Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 206 (207)
..+.|.|...|............+.. . ..+...-..|.+ .+.+.|.
T Consensus 87 ~~~~ltV~~~P~~~~i~~~~~~~g~~-~-l~C~a~g~~P~~~~~lti~Wl 134 (210)
T 1gsm_A 87 HTVQLLVYAFPNQLTVSPAALVPGDP-E-VACTAHKVTPVDPNALSFSLL 134 (210)
T ss_dssp EEEEEEEEBCCSEEEEESSSBCTTCC-E-EEEEEEEEBCCCTTTEEEEEE
T ss_pred EEEEEEEEecCCCcEEccceEEeCCc-e-EEEEeCCCCCCCCCCcEEEEE
Confidence 35677777655443332221111222 2 444444445655 5777774
No 345
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.07 E-value=3e-09 Score=72.78 Aligned_cols=79 Identities=19% Similarity=0.356 Sum_probs=61.6
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
|.+...+....+.+|+.+.|.|.+.+.+.+. .+.|++++..+.. ....|.|.+++.+|+|.|+|.
T Consensus 8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~-~~~W~~~~~~~~~--------------~~~~L~i~~~~~~d~G~Y~C~ 72 (175)
T 1fnl_A 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDN-STQWFHNESLISS--------------QASSYFIDAATVNDSGEYRCQ 72 (175)
T ss_dssp CEEEEESCCSEEETTCCEEEEEECCCBTTBC-CCEEEETTEEEES--------------SCSEEEESSCCGGGCEEEEEE
T ss_pred CEEEEcCCceeeeCCCcEEEEeeCCCCCCCc-ceEEEECCEEccC--------------CceEEEEeCCCcccCEEEEEE
Confidence 3344456666788999999999999987663 4789999987753 234899999999999999999
Q ss_pred eecC-CCCeEEEEEe
Q psy3475 153 PSSS-DGASVVVHVL 166 (207)
Q Consensus 153 ~~n~-~~~~~~~~v~ 166 (207)
+.|. ....+.+.|.
T Consensus 73 ~~n~~~s~~~~l~V~ 87 (175)
T 1fnl_A 73 TNLSTLSDPVQLEVH 87 (175)
T ss_dssp CSSSCCCCCEEEEEE
T ss_pred eeCCcccccEEEEEe
Confidence 9987 4555666666
No 346
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.07 E-value=4.8e-09 Score=80.55 Aligned_cols=87 Identities=26% Similarity=0.354 Sum_probs=64.2
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEEEecC---CCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVVNYSQ---RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
+....+.+|+.+.|.|.+.+.|.+ .+.|+++ +..+.... ..++.... ......|.|.+++.+|+|.|+|.|
T Consensus 7 ~~~~~~~~G~~v~l~C~~~g~p~p--~v~W~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a 82 (389)
T 2jll_A 7 LKNETTYENGQVTLVCDAEGEPIP--EITWKRAVDGFTFTEGDKSLDGRIEVKG--QHGSSSLHIKDVKLSDSGRYDCEA 82 (389)
T ss_dssp CCCEEEETTSEEEEEEEEECSSCC--EEEEEETTTTEEECC--CCSSSSEEEEE--CSSEEEEEEESCCGGGCEEEEEEE
T ss_pred cCceEEeCCCeEEEEEEeecccCC--eEEEEeCCCCceeccCcCCCCCeEEEec--cCCcceEEEcccChhhCEEEEEEE
Confidence 556677889999999999998877 8999998 88775421 23344332 124678999999999999999999
Q ss_pred ecCCC---CeEEEEEecCC
Q psy3475 154 SSSDG---ASVVVHVLNGK 169 (207)
Q Consensus 154 ~n~~~---~~~~~~v~~~~ 169 (207)
.|..+ ....|.|...+
T Consensus 83 ~n~~g~~~~~~~l~V~~~P 101 (389)
T 2jll_A 83 ASRIGGHQKSMYLDIEYAP 101 (389)
T ss_dssp ECSSCEEEEEEEEEEEEEE
T ss_pred EeCCCCcceEEEEEEEeCC
Confidence 99833 34455555433
No 347
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=6.5e-11 Score=73.57 Aligned_cols=69 Identities=25% Similarity=0.484 Sum_probs=53.7
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+....+..|+.+.|.|.+.+.| | .+.|++++..+....+ +.. ....|.|.++..+|+|.|+|.+.|..+
T Consensus 10 p~~~~v~~G~~v~L~C~~~g~p-p--~i~W~k~g~~~~~~~~--~~~------~~~~L~i~~v~~~D~G~Y~C~a~n~~g 78 (99)
T 2cr3_A 10 VESFLVHPGDLLQLRCRLRDDV-Q--SINWLRDGVQLAESNR--TRI------TGEEVEVQDSVPADSGLYACVTSSPSG 78 (99)
T ss_dssp EEECCBCTTSCEEEECCCCSSC-C--EEEEEESSSBCCCCSS--EEE------CSSEEEETTCCTTTCEEEEEEEEETTE
T ss_pred CcCeEEeCCCcEEEEEEecCCC-C--eEEEEECCEECCCCCc--EEE------ECCEEEEccCCHHHCEEEEEEEEeCCc
Confidence 4455677899999999998864 5 8999999977654432 221 135899999999999999999999843
No 348
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}
Probab=99.07 E-value=4.8e-10 Score=73.14 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=52.5
Q ss_pred CeeEEccCCccceeeEEEEe------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-ce----eeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KI----SIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~----~~~~~l~v 69 (207)
+.||||.++..+........ ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+.. .. ...+.|.|
T Consensus 34 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V 113 (129)
T 3rrq_A 34 LNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKLQIKESLRAELRV 113 (129)
T ss_dssp EEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEECGGGCEEEECCCEEEEE
T ss_pred EEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChhHCEEEEEEEEecCCCceeeEeceEEEEE
Confidence 57999987655544333211 147999887777788999999999999999999998632 22 45678888
Q ss_pred Eecc
Q psy3475 70 VISK 73 (207)
Q Consensus 70 ~~~~ 73 (207)
...+
T Consensus 114 ~~~~ 117 (129)
T 3rrq_A 114 TERR 117 (129)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 7644
No 349
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.06 E-value=1.4e-09 Score=80.69 Aligned_cols=112 Identities=11% Similarity=0.134 Sum_probs=75.9
Q ss_pred EEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEeccceEec-CcceEEecCCcEEEEEEEeeCCCCCc-EEEEEeCC
Q psy3475 36 WTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIG-NSELYIKSGSDINLTCVVLETPDPPS-FIYWYRGA 112 (207)
Q Consensus 36 ~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~-~~~W~~~~ 112 (207)
..|.|.+++.+ |.|.|.+...+ .....+.|.|..+|..+.. +....+..|+.++|.|.+.+..++.. .|.|++++
T Consensus 50 ~~~~l~~v~~~--~~y~C~~~~~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~ 127 (291)
T 1mq8_A 50 KVYELSNVQED--SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE 127 (291)
T ss_dssp EEEEEESCCSC--CCCEEEEECSSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSS
T ss_pred EEEEEEecccC--CeEEEEEEcCCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECC
Confidence 35788888854 46999997543 3556667888776644322 22234678999999999999744432 58999999
Q ss_pred EEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 113 NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+.+...... .......+.+.....++.+.|+|+|.|.
T Consensus 128 ~~l~~~~~~-------~~~~~~~l~~~~~~~D~g~~~~C~A~~~ 164 (291)
T 1mq8_A 128 KELKREPAV-------GEPAEVTTTVLVRRDHHGANFSCRTELD 164 (291)
T ss_dssp SEEEEEECC-------BTTEEEEEECCCSSSCSSCEEEEEEEEE
T ss_pred EEeecccCC-------CCCceEEEEeeeeeccCCceEEEEEEec
Confidence 877543210 0112345666666666777999999985
No 350
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.06 E-value=1e-09 Score=75.66 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=56.6
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
+.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+......++... ....|.|.+++.+|.|.|+|.
T Consensus 3 ~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~ 75 (189)
T 2v5t_A 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAP--AVSWLYHNEEVTTISDNRFAML-----ANNNLQILNINKSDEGIYRCE 75 (189)
T ss_dssp CEEEECCSSEEEETTSCEEECCEEECSSCC--EEEEEC-----CBCCCTTEEEC-----TTSCEEETTCCGGGCEEEEEE
T ss_pred ceeeccCCCEEEeCCCcEEEEEEEcCCCCC--EEEEEECCccceeccCCeEEEe-----cCCCEEEeeCCHhHCcEEEEE
Confidence 444555677788999999999999987766 8999999887765433333322 234699999999999999999
Q ss_pred eecCC
Q psy3475 153 PSSSD 157 (207)
Q Consensus 153 ~~n~~ 157 (207)
+.+..
T Consensus 76 ~~~~~ 80 (189)
T 2v5t_A 76 GRVEA 80 (189)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 99874
No 351
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Probab=99.06 E-value=1.2e-09 Score=71.74 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=52.8
Q ss_pred CeeEEccCCccceeeEEEEe------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc-----eeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK-----ISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v 69 (207)
|.||||.++..+...++... ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+... ......|.|
T Consensus 42 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~gt~L~V 121 (134)
T 3bik_B 42 LNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVV 121 (134)
T ss_dssp EEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECSCCGGGCEEEEEEEEECSSSCEEEECCCEEEEE
T ss_pred EEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECCCChHHCEEEEEEEEeCCCCceEEEcCCEEEEE
Confidence 58999988766665554432 2589998766666789999999999999999999875321 234567777
Q ss_pred Eec
Q psy3475 70 VIS 72 (207)
Q Consensus 70 ~~~ 72 (207)
...
T Consensus 122 ~~~ 124 (134)
T 3bik_B 122 TER 124 (134)
T ss_dssp ECC
T ss_pred eCC
Confidence 653
No 352
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.06 E-value=2.7e-09 Score=74.33 Aligned_cols=84 Identities=11% Similarity=0.127 Sum_probs=58.6
Q ss_pred eEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEee
Q psy3475 75 KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 75 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
+...+.. .+..|+.++|.|.+.+ +.+ .+.|++++..+....... ........|.|.+++.+|+|.|+|.+.
T Consensus 8 i~~~p~~-~v~~G~~v~L~C~~~~-~~~--~~~w~k~g~~~~~~~~~~-----~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 78 (196)
T 3p2t_A 8 LWAEPGS-VISWGNSVTIWCQGTL-EAR--EYRLDKEESPAPWDRQNP-----LEPKNKARFSIPSMTEDYAGRYRCYYR 78 (196)
T ss_dssp EEEESCS-EEETTCCEEEEEECCT-TCC--EEEEEETTSCSCSEEECC-----CSSSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEccCCC-cCCCCCcEEEEeeCCC-CCC--EEEEEECCCCCccccccc-----ccCCceEEEEeccCCcccCceEEEEEe
Confidence 3334444 6789999999999887 445 889999887653211100 001245789999999999999999999
Q ss_pred cCC-----CCeEEEEEec
Q psy3475 155 SSD-----GASVVVHVLN 167 (207)
Q Consensus 155 n~~-----~~~~~~~v~~ 167 (207)
|.. +..+.+.|..
T Consensus 79 n~~g~~~~s~~~~l~V~~ 96 (196)
T 3p2t_A 79 SPVGWSQPSDPLELVMTG 96 (196)
T ss_dssp ETTEEBCCCCCEEEEEEC
T ss_pred CCCcccCCCccEEEEecC
Confidence 873 3345666654
No 353
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.05 E-value=1.3e-09 Score=74.68 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=60.8
Q ss_pred eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEE
Q psy3475 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 150 (207)
.+|.+...+....+..|+.+.|.|.+.+.+.+. .+.|++++..+.. ....|.|.+++.+|+|.|+
T Consensus 3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~-~i~W~~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~ 67 (176)
T 1f2q_A 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVS-STKWFHNGSLSEE--------------TNSSLNIVNAKFEDSGEYK 67 (176)
T ss_dssp -CCCCEEESSCSEEETTCCEEEECCTTCC-----CCEEEETTEECSC--------------CSSEEEECSCCGGGCEEEE
T ss_pred CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcc-eEEEEECCeECCC--------------CceEEEEeccceecCEEEE
Confidence 345555566777789999999999998876542 5799999987642 2358999999999999999
Q ss_pred EEeecC-CCCeEEEEEe
Q psy3475 151 CAPSSS-DGASVVVHVL 166 (207)
Q Consensus 151 C~~~n~-~~~~~~~~v~ 166 (207)
|.+.|. .+..+.+.+.
T Consensus 68 C~~~~~~~s~~~~l~V~ 84 (176)
T 1f2q_A 68 CQHQQVNESEPVYLEVF 84 (176)
T ss_dssp EECTTSSCCCCEEEEEE
T ss_pred EEcCCccccccEEEEEe
Confidence 999997 4556666666
No 354
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.04 E-value=8.5e-10 Score=76.38 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=61.4
Q ss_pred eccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEE
Q psy3475 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150 (207)
Q Consensus 71 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~ 150 (207)
.+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.... .++.... ....|.|.+++.+|+|.|+
T Consensus 6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~--~i~W~~~~~~~~~~~-~~~~~~~----~~~~L~i~~~~~~d~G~Y~ 78 (192)
T 2iep_A 6 KAPVITTPLETVDALVEEVATFMCAVESYPQP--EISWTRNKILIKLFD-TRYSIRE----NGQLLTILSVEDSDDGIYC 78 (192)
T ss_dssp EEEEESSCCCEEEEETTSCEEEECCEEEESCC--EEEEEETTEECCTTC-TTEEEEG----GGTEEEESSCCGGGCEEEE
T ss_pred CCceeecCccceeeeCCCcEEEEeeCCCCCCC--eEEEEECCEEccccC-ccEEEcC----CccEEEEcCCCcccCeEEE
Confidence 34555455667778899999999999998777 899999998875432 2233221 2347999999999999999
Q ss_pred EEeecCCC
Q psy3475 151 CAPSSSDG 158 (207)
Q Consensus 151 C~~~n~~~ 158 (207)
|.+.|..+
T Consensus 79 C~~~~~~~ 86 (192)
T 2iep_A 79 CTANNGVG 86 (192)
T ss_dssp EEEECSSS
T ss_pred EEEEcCCC
Confidence 99999743
No 355
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=5.2e-10 Score=69.72 Aligned_cols=78 Identities=24% Similarity=0.493 Sum_probs=58.1
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCe
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~ 160 (207)
...+..|+.+.|.|.+. .|.+ .+.|++++..+....+ +....+ .....|.|.++..+|+|.|+|.+.+. ...
T Consensus 20 ~~~v~~G~~v~L~C~~~-~p~~--~v~W~k~g~~~~~~~~--~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~~~-~~~ 91 (102)
T 2eo1_A 20 EVQAEAGASATLSCEVA-QAQT--EVTWYKDGKKLSSSSK--VRVEAV--GCTRRLVVQQAGQAEAGEYSCEAGGQ-QLS 91 (102)
T ss_dssp EEEEETTCCEEECCBCS-CSSS--CCEEEETTEECCCCSS--EEEEEE--TTEEEEEETTCCTTTCSCEEEEETTE-ECC
T ss_pred cEEEeCCCcEEEEEEec-CCCC--ceEEEECCEECCCCCC--EEEEEc--CCEEEEEECCCCcccCEEEEEEcCCC-cEE
Confidence 45678999999999997 5656 7899999998865543 333322 24468999999999999999999765 233
Q ss_pred EEEEEe
Q psy3475 161 VVVHVL 166 (207)
Q Consensus 161 ~~~~v~ 166 (207)
..+.|.
T Consensus 92 ~~l~V~ 97 (102)
T 2eo1_A 92 FRLQVA 97 (102)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555554
No 356
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Probab=99.04 E-value=1.4e-09 Score=69.67 Aligned_cols=57 Identities=19% Similarity=0.360 Sum_probs=45.4
Q ss_pred CeeEEccCCccceeeEEEEe------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYT------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..+...++... .++||++..+...+.++|.|.+++.+|+|.|.|.+.+
T Consensus 32 v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 94 (117)
T 3bp6_A 32 LNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAIS 94 (117)
T ss_dssp EEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEEeCCCCCceEEEEECCCCccccccCcEEEEEcCCCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 58999988766655444332 3689998776777889999999999999999999876
No 357
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.03 E-value=1e-09 Score=79.24 Aligned_cols=109 Identities=16% Similarity=0.142 Sum_probs=54.2
Q ss_pred eEEEEEEecCCceeeeEEEEEEeccceEecCcceE-EecCCcEEEEEEEeeCC--CCCcEEEEEeCCEEEEecCCCceEE
Q psy3475 49 GTYECQVSTEPKISIGYKLNVVISKAKIIGNSELY-IKSGSDINLTCVVLETP--DPPSFIYWYRGANVVNYSQRGGISV 125 (207)
Q Consensus 49 G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~--~~~~~~~W~~~~~~~~~~~~~~~~~ 125 (207)
|.|.|...+.... ......+..|...+..+.... +..|+.+.|.|.+.+.+ +....+.|+++|..+..........
T Consensus 1 ~~~~~~~~~~~~~-c~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~ 79 (240)
T 4acp_A 1 GTKSCDKTHTCPP-CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREE 79 (240)
T ss_dssp -----------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEE
T ss_pred CceeeeeeecCCC-CCccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceE
Confidence 6788988763221 111111223444444555444 45699999999999975 3344899999998874321111101
Q ss_pred EEec-ccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 126 VTEK-QTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 126 ~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
..++ ....+.|.|.....+|.|.|+|.|.+...
T Consensus 80 ~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~ 113 (240)
T 4acp_A 80 QYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL 113 (240)
T ss_dssp C---CEEEEEEEECCHHHHHHTCCEEEEEECC--
T ss_pred CCCCeEEEEEEEEEechhccCCCEEEEEEEcCCC
Confidence 0011 11235677777777789999999999843
No 358
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.03 E-value=2e-09 Score=75.75 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=53.6
Q ss_pred ceEEecCCcEEEEEEE---eeCCCCCcEEEEEeCCEEEEe---------------cCCCceEEEEecccceEEEEEEecc
Q psy3475 81 ELYIKSGSDINLTCVV---LETPDPPSFIYWYRGANVVNY---------------SQRGGISVVTEKQTRTSRLVISKAV 142 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~---~~~~~~~~~~~W~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~i~~~~ 142 (207)
.+++..|+.++|.|.. .+.|.+ .+.|+++|..... ....++.... ......|.|.+++
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~--~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~ 77 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEI--EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR--SANTFFLVVTAAN 77 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTS--EEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEE--ETTEEEEEESSCC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCc--EEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEE--cCCEEEEEEccCC
Confidence 3567889999999964 455666 8999986532110 0111122111 2245689999999
Q ss_pred cCCCeEEEEEeecCCC---CeEEEEEe
Q psy3475 143 TSDSGNYTCAPSSSDG---ASVVVHVL 166 (207)
Q Consensus 143 ~~d~g~Y~C~~~n~~~---~~~~~~v~ 166 (207)
.+|+|.|+|.+.|..+ ....|.|.
T Consensus 78 ~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 104 (203)
T 4fa8_A 78 ISHDGNYLCRMKLGETEVTKQEHLSVV 104 (203)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHCeEEEEEEEcCCCcEEEEEEEEec
Confidence 9999999999999833 23445554
No 359
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.03 E-value=9e-09 Score=71.05 Aligned_cols=85 Identities=29% Similarity=0.522 Sum_probs=60.6
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe-CCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeec
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n 155 (207)
..+....+..|+.+.|.|.+.+.|. .+.|++ ++..+....+ +....+ .....|.|.++..+|+|.|+|.+.|
T Consensus 7 ~~~~~~~v~~G~~v~L~C~~~~~p~---~v~W~~~~~~~~~~~~~--~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~ 79 (189)
T 2v44_A 7 ISLSKVELSVGESKFFTCTAIGEPE---SIDWYNPQGEKIISTQR--VVVQKE--GVRSRLTIYNANIEDAGIYRCQATD 79 (189)
T ss_dssp ESCSEEEEETTCCEEEEEEEEECCS---EEEEECTTSCBCCCCSS--EEEEEE--TTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred ecCCceEEecCCcEEEEEEeecCCe---eEEEEeCCCCccCCCce--EEEECC--CCeEEEEEccCCcccCeEEEEEEEe
Confidence 3455677889999999999988643 799999 6766544333 333322 2456899999999999999999999
Q ss_pred CCCC----eEEEEEecC
Q psy3475 156 SDGA----SVVVHVLNG 168 (207)
Q Consensus 156 ~~~~----~~~~~v~~~ 168 (207)
..+. .+.+.+...
T Consensus 80 ~~g~~~~~~~~l~v~~~ 96 (189)
T 2v44_A 80 AKGQTQEATVVLEIYQK 96 (189)
T ss_dssp TTSCEEEEEEEEEEECC
T ss_pred CCCCcEEEEEEEEEecC
Confidence 8433 334555443
No 360
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A
Probab=99.03 E-value=1.3e-09 Score=76.61 Aligned_cols=97 Identities=25% Similarity=0.314 Sum_probs=62.3
Q ss_pred CeeEEccCCccceeeEEEE---eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC--C--ceeeeEEEEEEec-
Q psy3475 1 VSWIRKRDLHILTVGILTY---TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--P--KISIGYKLNVVIS- 72 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~--~~~~~~~l~v~~~- 72 (207)
|.||||.++..+....+.. ...+||.+..+...+.++|+|.+++.+|+|.|.|.+... . .......|.|...
T Consensus 34 v~Wyrq~~g~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Cav~~~~~~~~~fG~GT~L~V~~~~ 113 (205)
T 3qjh_A 34 VQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAAEASNTNKVVFGTGTRLQVLPNI 113 (205)
T ss_dssp EEEEEEC-CCCEEEEEEESSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTTCCEEEBCCEEEEEECCC
T ss_pred EEEEEECCCCCcEEEEEECCCCccCCCEEEEEcCCCCEEEEEEeccccccCeEEEEEEEcCCCCccccCCCEEEEEeCcc
Confidence 5899998766555433322 125789887767778899999999999999999998731 1 1334467777642
Q ss_pred --c-ceEecCcceEEecCCcEEEEEEEeeCCC
Q psy3475 73 --K-AKIIGNSELYIKSGSDINLTCVVLETPD 101 (207)
Q Consensus 73 --~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 101 (207)
+ +.+..+. .....++|.|.+.+..+
T Consensus 114 ~~~~p~V~~l~----~~~~~~tl~Cl~~~f~P 141 (205)
T 3qjh_A 114 QNPDPAVYQLR----DSKSSDKSVCLFTDFDS 141 (205)
T ss_dssp SSCCCEEEEEE----BCC--CCEEEEEESCCT
T ss_pred cCCCCEEEEec----ccCCCcEEEEEEEcccc
Confidence 1 1111111 11223789999999754
No 361
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}
Probab=99.03 E-value=1.1e-09 Score=71.00 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=50.7
Q ss_pred CeeEEccCCccceeeEEEEe-----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc-eeeeEEEEEEecc
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNVVISK 73 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~ 73 (207)
+.||||.++..+...++... ..+||.+..+...+.++|+|.+++.+|+|.|.|.+...+. ....+.|.|..+|
T Consensus 35 ~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~~~~~~~~v~L~V~~~~ 113 (124)
T 2nms_A 35 KWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAP 113 (124)
T ss_dssp EEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred EEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCCCCccEEEEEEEeCCC
Confidence 47999987644332222111 2478888777777889999999999999999999976432 3445666666544
No 362
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.03 E-value=4e-09 Score=77.25 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=56.2
Q ss_pred cCCCCCeEEEEEEecCCc-eeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe--CCEE---EE
Q psy3475 43 SQLRDSGTYECQVSTEPK-ISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR--GANV---VN 116 (207)
Q Consensus 43 ~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~--~~~~---~~ 116 (207)
.+.+|.+.|.|.+.+... ......+.| ...+..+.+..|+.++|.|.+.+ +.+ .+.|++ .+.. +.
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v------~~~p~~v~v~~G~~v~L~C~~~~-~~~--~v~W~k~~~~~~~~~~~ 73 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGSGGGGGMKV------IQTPRYLVKGQGQKAKMRCIPEK-GHP--VVFWYQQNKNNEFKFLI 73 (270)
T ss_dssp -------------------------CCC------EEECSEEEEETTSCEEEEEECCT-TCC--EEEEEEECTTCCEEEEE
T ss_pred chhhhHHHHHHHHhccCCccccccceeE------EeCCCeEEEcCCCCEEEEEEecC-CCc--eEEEEEECCCCCcEEEE
Confidence 467899999999886422 222222222 23345567889999999999755 444 899997 2211 11
Q ss_pred ecCC----------C-ceEEEEecccceEEEEEEecccCCCeEEEEEeecC-------CCCeEEEEEec
Q psy3475 117 YSQR----------G-GISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS-------DGASVVVHVLN 167 (207)
Q Consensus 117 ~~~~----------~-~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~-------~~~~~~~~v~~ 167 (207)
.... . ++..... ......|.|.+++.+|+|.|.|.+.+. .+....+.|..
T Consensus 74 ~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~ 141 (270)
T 3qib_D 74 NFQNQEVLQQIDMTEKRFSAECP-SNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLE 141 (270)
T ss_dssp EEETTEEEEECHHHHHHEEEECC-TTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEES
T ss_pred EECCCCceecCCccCCcEEEEeC-CCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcc
Confidence 1110 0 2222211 234568999999999999999999863 22344566654
No 363
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.02 E-value=1e-08 Score=70.53 Aligned_cols=78 Identities=15% Similarity=0.270 Sum_probs=59.4
Q ss_pred eEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCCCeE
Q psy3475 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASV 161 (207)
Q Consensus 82 ~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~~~ 161 (207)
..+.+|+.+.|.|.+.+.+.|...+.|++++..+...... .....|.|. ..+|+|.|+|.+.|......
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~---------~~~~~l~i~--~~~d~G~Y~C~~~n~~~~~~ 76 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---------GQKTEFKVD--SDDQWGEYSCVFLPEPMGTA 76 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC---------CSEEEEEEC--GGGCCEEEEEEEESTTSCEE
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc---------CCcEEEEEe--chhhCeEEEEEEECCcCcEE
Confidence 3457899999999999987776689999999888765431 123455555 68999999999999766777
Q ss_pred EEEEecCCc
Q psy3475 162 VVHVLNGKK 170 (207)
Q Consensus 162 ~~~v~~~~~ 170 (207)
.+.|...+.
T Consensus 77 ~l~V~~~P~ 85 (184)
T 3b5h_A 77 NIQLHGPPR 85 (184)
T ss_dssp EEEECCSCC
T ss_pred EEEEecCCc
Confidence 787776544
No 364
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.02 E-value=9.5e-09 Score=73.17 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=51.8
Q ss_pred ceEEecCCcEEEEEEEeeCCCCC-cEEEEEeCCEEE-----------Eec----CCCceEEEEec-ccceEEEEEEeccc
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPP-SFIYWYRGANVV-----------NYS----QRGGISVVTEK-QTRTSRLVISKAVT 143 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~-~~~~W~~~~~~~-----------~~~----~~~~~~~~~~~-~~~~~~l~i~~~~~ 143 (207)
.+.+..|+.+.|.|.+.+.+.+. ..|.|++++... ... ...+....... ......|.|.+++.
T Consensus 13 pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~ 92 (226)
T 4f80_A 13 PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTA 92 (226)
T ss_dssp CEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCG
T ss_pred CEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCch
Confidence 46778999999999998765432 368999865321 100 01122222211 23456899999999
Q ss_pred CCCeEEEEEeecCC
Q psy3475 144 SDSGNYTCAPSSSD 157 (207)
Q Consensus 144 ~d~g~Y~C~~~n~~ 157 (207)
+|+|.|+|.+.|..
T Consensus 93 ~D~G~Y~C~a~n~~ 106 (226)
T 4f80_A 93 SDSGKYLCYFQDGD 106 (226)
T ss_dssp GGCEEEEEEEEETT
T ss_pred HHCeeEEEEEECCC
Confidence 99999999999983
No 365
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=99.02 E-value=9.2e-09 Score=64.75 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=54.1
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC-----EEEEec-------CCCceEEEEecccceEEEEEEecccCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA-----NVVNYS-------QRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.|..+.+..|+.++|.|.+.+.+.+ .+.|++.. ..+... ...++.... ......|.|.+++.+|
T Consensus 7 ~p~~~~~~~G~~v~L~C~~~~~~~~--~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D 82 (108)
T 1jhl_L 7 SPSYLVASPGETITINCRASKSISK--SLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG--SGTDFTLTISSLEPED 82 (108)
T ss_dssp ECSEEEECTTSCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--SSSEEEEEECSCCTTC
T ss_pred cCCeeEEcCCCCEEEEeEECCCCCc--eEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEe--cCCEEEEEECCCCHHH
Confidence 4556778899999999999987765 79999842 122211 122343332 2345689999999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
+|.|.|.+.|.
T Consensus 83 sG~Y~C~~~n~ 93 (108)
T 1jhl_L 83 FAMYICQQHNE 93 (108)
T ss_dssp CSEEEEEECSS
T ss_pred CEEEEEEEccC
Confidence 99999999986
No 366
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.02 E-value=2.8e-09 Score=75.78 Aligned_cols=84 Identities=21% Similarity=0.396 Sum_probs=61.9
Q ss_pred cceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC-
Q psy3475 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG- 158 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~- 158 (207)
....+..|+.+.|.|.+.+.|.+ .+.|++++..+........... ......|.|.+++.+|+|.|+|.+.|..+
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~ 101 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPAGGNPMP--TMRWLKNGKEFKQEHRIGGYKV---RNQHWSLIMESVVPSDKGNYTCVVENEYGS 101 (231)
T ss_dssp SCEEEETTSCEEEECCEEEESCC--EEEEEETTEECCGGGSTTCCEE---EGGGTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred eeEEEccCCCEEEEEecccCCCC--eEEEEECCccccccccccceee---ecCcceEEEecCCcccCEEEEEEEecccCc
Confidence 56778899999999999998777 8999999998765433211111 12345799999999999999999998832
Q ss_pred --CeEEEEEecC
Q psy3475 159 --ASVVVHVLNG 168 (207)
Q Consensus 159 --~~~~~~v~~~ 168 (207)
....+.+...
T Consensus 102 ~~~~~~l~V~~~ 113 (231)
T 3ojm_B 102 INHTYHLDVVER 113 (231)
T ss_dssp EEEEEEEEEECC
T ss_pred ccccEEEEEEcC
Confidence 3445555543
No 367
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.02 E-value=4.9e-09 Score=72.95 Aligned_cols=119 Identities=10% Similarity=0.124 Sum_probs=79.0
Q ss_pred cEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEeccceE-ecCcceEEecCCcEEEEEEEeeCCCCCc-EEEEEeC
Q psy3475 35 EWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKI-IGNSELYIKSGSDINLTCVVLETPDPPS-FIYWYRG 111 (207)
Q Consensus 35 ~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~~-~~~W~~~ 111 (207)
...+.|.+++ +|.+.|.|.+...+ .....+.|.|..+|..+ +.+....+.+|+.++|.|.+.+..++.. .+.|+++
T Consensus 51 ~~~~~ls~vs-~d~~~~~C~~~c~~~~~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg 129 (196)
T 3bn3_B 51 WLARQLVDIR-EPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRG 129 (196)
T ss_dssp EEEEEEEEEC-SSEECCEEEEEETTEEEEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEET
T ss_pred ceEEEEEEEc-cCCCceEEEEECCCCceEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeC
Confidence 3358999999 88888999987543 45677888888766433 2333333678999999999998644332 4899999
Q ss_pred CEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
+..+.......- ..........+.+.....++...|+|.|.+.
T Consensus 130 ~~~l~~~~~~~~--~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~ 172 (196)
T 3bn3_B 130 AQELIRRSFAGE--PPRARGAVLTATVLARREDHGANFSCRAELD 172 (196)
T ss_dssp TEEEEEEECTTS--CTTCCCEEEEEEEECCGGGTTCEEEEEEEEE
T ss_pred CEEeeccccccc--cccccceeEEEEEeeeeccCCCeEEEEEEcc
Confidence 998764321000 0000112345666666666666999999986
No 368
>1smo_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immune system receptor, system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Probab=99.01 E-value=1.2e-09 Score=70.24 Aligned_cols=71 Identities=20% Similarity=0.214 Sum_probs=50.6
Q ss_pred CeeEEccCCccceeeEEEEe--------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC--c--eeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT--------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--K--ISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~--~~~~~~l~ 68 (207)
+.||||.++..+...+.... ..+||++..+...+.++|+|.+++.+|+|.|.|.+.... . ....+.|.
T Consensus 33 ~~Wyrq~pg~~~~~l~~~~~~s~~~~~~~~~Rfs~~~~~~~~~~~LtI~~l~~~Dsg~Y~C~~~~~~~~~~~~~~~v~L~ 112 (119)
T 1smo_A 33 KAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLV 112 (119)
T ss_dssp EEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSCCEECSCEEEEE
T ss_pred EEEEEeCCCCCCEEEEEEeCCCccCCcccCCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCCcceEEEEEEEE
Confidence 37999998876665544211 137999887777789999999999999999999987533 1 12455666
Q ss_pred EEe
Q psy3475 69 VVI 71 (207)
Q Consensus 69 v~~ 71 (207)
|..
T Consensus 113 V~~ 115 (119)
T 1smo_A 113 VTK 115 (119)
T ss_dssp C--
T ss_pred EEC
Confidence 544
No 369
>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B
Probab=99.01 E-value=2.1e-09 Score=69.27 Aligned_cols=56 Identities=20% Similarity=0.276 Sum_probs=44.3
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEe
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 56 (207)
|.||||.++..+....+... ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.
T Consensus 36 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 101 (121)
T 2xt1_B 36 MAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDDDKNILYLQMNDLKPEDTAMYYCKAS 101 (121)
T ss_dssp EEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEET
T ss_pred EEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEE
Confidence 58999987766655444332 147899887766678999999999999999999986
No 370
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Probab=99.00 E-value=1.7e-09 Score=70.12 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=45.5
Q ss_pred CeeEEccCCccceeeEEEEeC--------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTN--------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..+...+..... ++||++..+...+.++|+|.+++.+|+|.|.|....
T Consensus 38 ~~WyrQ~pg~~~~~li~~~~~~~~~~~~~~gRfsis~~~s~~~~~LtIs~lq~eDsa~Y~Ca~~~ 102 (127)
T 1q8m_A 38 KAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQ 102 (127)
T ss_dssp EEEEEEETTTEEEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred EEEEEeCCCCCCEEEEEEcCCCceeccccCCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 379999988777654432211 269998888878899999999999999999999875
No 371
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.00 E-value=6.1e-09 Score=73.82 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=63.9
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
+.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+... ....|.|.+++.+|+|.|+|.
T Consensus 19 ~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~--~v~W~~~~~~~~~~-------------~~~~L~i~~v~~~d~G~Y~C~ 83 (218)
T 3k0w_A 19 SKITVNPESKAVLAGQFVKLCCRATGHPFV--QYQWFKMNKEIPNG-------------NTSELIFNAVHVKDAGFYVCR 83 (218)
T ss_dssp CCEEECCCCEEEETTSBEEEECEETTTTSS--EEEEEETTEECTTC-------------CSSEEEETTCCGGGCEEEEEE
T ss_pred CEEEECCCCeEEeCCCcEEEEeeecCCCCC--EEEEEECCEECCCC-------------CCCEEEEccCChhhCeEeEEE
Confidence 344556777888999999999999887766 89999999876432 235799999999999999999
Q ss_pred eecCC----CCeEEEEEecC
Q psy3475 153 PSSSD----GASVVVHVLNG 168 (207)
Q Consensus 153 ~~n~~----~~~~~~~v~~~ 168 (207)
+.|.. +....+.|...
T Consensus 84 ~~n~~~~~~s~~~~l~V~~~ 103 (218)
T 3k0w_A 84 VNNNFTFEFSQWSQLDVCDI 103 (218)
T ss_dssp EECTTCCEECCCEEEEEECC
T ss_pred EEcCCCCceeeEEEEEEEcc
Confidence 99983 33466666654
No 372
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=98.99 E-value=1.9e-08 Score=70.83 Aligned_cols=86 Identities=20% Similarity=0.356 Sum_probs=59.0
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC---E--EEEec-------CCCceEEEEecccceEEEEEEecccC
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA---N--VVNYS-------QRGGISVVTEKQTRTSRLVISKAVTS 144 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~---~--~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~ 144 (207)
..+....+..|+.+.|.|.+.+.+.+ .+.|++.. . .+... ...++.... ......|.|.+++.+
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 81 (213)
T 3r06_A 6 QSPSSLPASLGDRVTINCQASQDISN--YLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG--SGRDSSFTISSLESE 81 (213)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred eCCCEEEecCCCcEEEEEEeCCCcCc--eEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec--cCCEEEEEECCCCcc
Confidence 34666778899999999999998666 89998721 1 11111 122333332 224568999999999
Q ss_pred CCeEEEEEeecCC----CCeEEEEEe
Q psy3475 145 DSGNYTCAPSSSD----GASVVVHVL 166 (207)
Q Consensus 145 d~g~Y~C~~~n~~----~~~~~~~v~ 166 (207)
|+|.|+|.+.|.. +....+.|.
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~ 107 (213)
T 3r06_A 82 DIGSYYCQQYYNYPWTFGPGTKLEIK 107 (213)
T ss_dssp GCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred cCEEEEEecccCCceEEcCCceEEEe
Confidence 9999999998862 444566663
No 373
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=98.99 E-value=3.8e-09 Score=72.98 Aligned_cols=79 Identities=19% Similarity=0.550 Sum_probs=59.1
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCCC--
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG-- 158 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~-- 158 (207)
...+..|+.+.|.|.+.+.|.+ .+.|++++..+....+ +... .....|.|.+++.+|+|.|+|.+.|..+
T Consensus 13 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~--~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 84 (192)
T 2va4_A 13 NATAERGEEMTFSCRASGSPEP--AISWFRNGKLIEENEK--YILK----GSNTELTVRNIINSDGGPYVCRATNKAGED 84 (192)
T ss_dssp EEETTSCCCEEEECEEECSSCC--EEEEEETTEECCCSSS--EEEE----TTTTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred EEEEecCCCEEEEEeeccCCCC--eEEEEECCeEcCCCcc--EEEe----CCeeEEEEecCChhcCcEEEEEEEcccccc
Confidence 4567789999999999988777 8999999988765533 2221 1345799999999999999999998832
Q ss_pred -CeEEEEEec
Q psy3475 159 -ASVVVHVLN 167 (207)
Q Consensus 159 -~~~~~~v~~ 167 (207)
....+.+..
T Consensus 85 ~~~~~l~V~~ 94 (192)
T 2va4_A 85 EKQAFLQVFV 94 (192)
T ss_dssp EEEEEEEEEE
T ss_pred ceEEEEEEEc
Confidence 334455543
No 374
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=98.99 E-value=1.2e-09 Score=69.91 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=47.3
Q ss_pred CeeEEccCCccceeeEEEEe-----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-ceeeeEEEEEEe
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVI 71 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~ 71 (207)
+.||||.++..+...++... ..+|+.+..+...+.++|+|.+++.+|+|.|.|.+...+ .......|.|.+
T Consensus 35 v~Wyrq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~~~~l~f~~~~~~~~ 111 (117)
T 1xed_A 35 KYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLE 111 (117)
T ss_dssp EEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred EEEEEeCCCCCCEEEEEeCCeEcceEcCCEEEEecCCCCEEEEEECCCChHHCEEEEEEEEeCCCCeeEEEEEEEee
Confidence 57999987655544333211 257898877777788999999999999999999997533 244555555543
No 375
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}
Probab=98.98 E-value=5.1e-10 Score=70.85 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=48.7
Q ss_pred CeeEEccCCccceeeEEEE----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC-c--eeeeEEEEEEecc
Q psy3475 1 VSWIRKRDLHILTVGILTY----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-K--ISIGYKLNVVISK 73 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~l~v~~~~ 73 (207)
|.|||+.++..+....... ..++||.+..+...+.++|+|.+++.+|+|.|.|.+.+.. . ......|.|.++|
T Consensus 29 v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~g~~~~~~~~v~v~V~p 108 (110)
T 2q87_A 29 KYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFP 108 (110)
T ss_dssp EEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECTTSCCBCCCSEEEEEEEC-
T ss_pred EEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCEEEEEEEecCccCccCCccEEEEEEEec
Confidence 5799987654333222110 0247888776555567899999999999999999998752 2 3455666666544
No 376
>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1
Probab=98.98 E-value=1.1e-09 Score=69.81 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=44.5
Q ss_pred CeeEEccCCccceeeEEEEe--------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT--------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
+.||||.++..+........ .++||.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 33 v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 98 (114)
T 1u9k_A 33 KAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIYHP 98 (114)
T ss_dssp EEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred EEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEEecCcCCEEEEEECCCChHHCEEEEEEEecC
Confidence 57999987765554443321 13788887766667889999999999999999999863
No 377
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=98.97 E-value=1.1e-08 Score=70.52 Aligned_cols=77 Identities=12% Similarity=0.083 Sum_probs=56.2
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
|.+...+.. .+..|+.+.|.|.+.+ +.+ .+.|++++.... .....|.|.+++.+|+|.|+|.
T Consensus 9 P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~--~~~W~k~g~~~~--------------~~~~~L~i~~v~~~D~G~Y~C~ 70 (184)
T 2gi7_A 9 PSLQALPSS-LVPLEKPVTLRCQGPP-GVD--LYRLEKLSSSRY--------------QDQAVLFIPAMKRSLAGRYRCS 70 (184)
T ss_dssp CEEEEESCS-EEETTCCEEEEEECST-TCS--EEEEEETTTCCE--------------ESSSEEEESSCCGGGCEEEEEE
T ss_pred CeEEeCCCc-cccCCCcEEEEEeCCC-CCC--EEEEEECCcccc--------------CcccEEEECcCChhhCceEEEE
Confidence 333334443 6789999999999876 555 899999876511 1345899999999999999999
Q ss_pred eecCC-----CCeEEEEEec
Q psy3475 153 PSSSD-----GASVVVHVLN 167 (207)
Q Consensus 153 ~~n~~-----~~~~~~~v~~ 167 (207)
+.|.. +..+.+.+..
T Consensus 71 a~n~~g~~~~s~~~~l~V~~ 90 (184)
T 2gi7_A 71 YQNGSLWSLPSDQLELVATG 90 (184)
T ss_dssp EEETTEEBCCCCCEEEEEES
T ss_pred EEcCCCccCCCCCEEEEecC
Confidence 99962 3445666643
No 378
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Probab=98.97 E-value=3.9e-09 Score=68.10 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=48.6
Q ss_pred CeeEEccCCccceeeEEEE-----eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC--ceeeeEEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTY-----TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVV 70 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~ 70 (207)
+.|||+.++..+...+... ...+||.+..+...+.++|+|.+++.+|+|.|.|.+...+ .....+.|.+.
T Consensus 44 v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~v~~~~~~~~~~~~~l~L~ 120 (122)
T 1hkf_A 44 KGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV 120 (122)
T ss_dssp EEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECTTTCCEEEEEEEEEE
T ss_pred EEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCCCCcccccEEEEEE
Confidence 4799998764422222211 1258998876777789999999999999999999998643 34445555443
No 379
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=98.97 E-value=1.2e-08 Score=71.86 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=58.7
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC--EEE---Ee-------cCCCceEEEEecccceEEEEEEecccCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA--NVV---NY-------SQRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.+..+.+..|+.+.|.|.+.+.+.+ .+.|++++ ..+ .. ....++.... ......|.|.+++.+|
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D 82 (213)
T 3d9a_L 7 SPATLSVTPGNSVSLSCRASQSIGN--NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETED 82 (213)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred CCccEEEeCCCcEEEEEECCCCCCC--CEEEEEeCCCCCcEEEEEEcccccccccccEEEEc--CCCEEEEEECCCChhh
Confidence 3566778899999999999998766 79998732 211 10 1112333332 2245689999999999
Q ss_pred CeEEEEEeecCCC----CeEEEEEec
Q psy3475 146 SGNYTCAPSSSDG----ASVVVHVLN 167 (207)
Q Consensus 146 ~g~Y~C~~~n~~~----~~~~~~v~~ 167 (207)
+|.|+|.+.|..+ ....+.|..
T Consensus 83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~ 108 (213)
T 3d9a_L 83 FGMYFCQQSNSWPYTFGGGTKLEIKR 108 (213)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEECC
T ss_pred CEEEEEeeecCCcceeCCCEEEEEec
Confidence 9999999999732 234566654
No 380
>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A
Probab=98.97 E-value=3.3e-09 Score=67.72 Aligned_cols=70 Identities=21% Similarity=0.331 Sum_probs=48.1
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v 69 (207)
|.|||+.++..+....+... ..+||.+..+.....++|+|.+++.+|+|.|.|.+.+... +.....|.|
T Consensus 33 v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~~~~~~~fg~gT~L~V 112 (116)
T 3bj9_1 33 VYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGARSTHVFGSGTQLTV 112 (116)
T ss_dssp EEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSSCCEECCCEEEEE
T ss_pred EEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCCCceEEEEECCCChhHCEEEEEEEeCCCCcEECCCEEEEE
Confidence 58999987665554444321 1478887766544567999999999999999999976322 233445555
Q ss_pred E
Q psy3475 70 V 70 (207)
Q Consensus 70 ~ 70 (207)
.
T Consensus 113 ~ 113 (116)
T 3bj9_1 113 L 113 (116)
T ss_dssp E
T ss_pred e
Confidence 4
No 381
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=98.97 E-value=3.8e-09 Score=74.15 Aligned_cols=94 Identities=20% Similarity=0.343 Sum_probs=62.4
Q ss_pred ccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCC-ce-EEEEe-cccceEEEEEEecccCCCeE
Q psy3475 72 SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRG-GI-SVVTE-KQTRTSRLVISKAVTSDSGN 148 (207)
Q Consensus 72 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~-~~~~~-~~~~~~~l~i~~~~~~d~g~ 148 (207)
+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+...... +. ..... +......|.|.++...|+|.
T Consensus 9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 86 (212)
T 2v9r_A 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTP--TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86 (212)
T ss_dssp EEEEEECCCCEEECTTCCEEECCEEEEESCC--EEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred CcceecCCCceEEeCCCcEEEEEEcCCCCCC--EEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence 4555566777888999999999999988777 89999999887643211 10 11111 01111234456678999999
Q ss_pred EEEEeecCC----CCeEEEEEec
Q psy3475 149 YTCAPSSSD----GASVVVHVLN 167 (207)
Q Consensus 149 Y~C~~~n~~----~~~~~~~v~~ 167 (207)
|+|.+.|.. .....+.+..
T Consensus 87 Y~C~~~n~~g~~~~~~~~l~V~~ 109 (212)
T 2v9r_A 87 YVCVARNYLGEAVSHDASLEVAI 109 (212)
T ss_dssp EEEEEEETTEEEECCCEEEEECE
T ss_pred EEEEEECCCCceeecceEEEEEe
Confidence 999999873 3345555543
No 382
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=98.96 E-value=1.2e-08 Score=71.28 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=56.9
Q ss_pred cceEEecCCcEEEEEEEeeCCC--C-CcEEEEEe-CCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEee
Q psy3475 80 SELYIKSGSDINLTCVVLETPD--P-PSFIYWYR-GANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~~~--~-~~~~~W~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
....+..|+.+.|.|.+.+.+. . ...+.|++ ++....... +.....+. ......|.|.+++.+|+|.|+|.+.
T Consensus 10 ~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~--r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 87 (202)
T 3bp6_B 10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSE--RATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVI 87 (202)
T ss_dssp SEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCS--SCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred cCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCC--ceEEeeccccCCeeEEEECCCCHHHCcEEEEEEE
Confidence 4567889999999999988764 1 12899999 444332222 22222211 1245789999999999999999999
Q ss_pred cCCC---CeEEEEEecC
Q psy3475 155 SSDG---ASVVVHVLNG 168 (207)
Q Consensus 155 n~~~---~~~~~~v~~~ 168 (207)
|..+ ..+.|.|...
T Consensus 88 ~~~~~~~~~~~l~V~~~ 104 (202)
T 3bp6_B 88 CGAAWDYKYLTVKVKAS 104 (202)
T ss_dssp ETTEEEEEEEEEEEEBC
T ss_pred eCCCcceEEEEEEecCC
Confidence 9833 3445555543
No 383
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=98.96 E-value=6.2e-09 Score=73.00 Aligned_cols=86 Identities=22% Similarity=0.370 Sum_probs=59.9
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEE----------ecCCCceEEEEecccceEEEEEEecccCCC
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVN----------YSQRGGISVVTEKQTRTSRLVISKAVTSDS 146 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 146 (207)
..+....+..|+.+.|.|.+.+.|.+ .+.|++++..+. .....++.. ....|.|.+++.+|+
T Consensus 6 ~~~~~~~v~~G~~v~L~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~------~~~~L~i~~v~~~D~ 77 (212)
T 1f97_A 6 TAQSDVQVPENESIKLTCTYSGFSSP--RVEWKFVQGSTTALVCYNSQITAPYADRVTF------SSSGITFSSVTRKDN 77 (212)
T ss_dssp CSCSEEEEETTCCEEEECEEESCSSE--EEEEEEEETTEEEEEEETTEECGGGTTTEEE------ETTEEEESCCCGGGC
T ss_pred ecCCCeEEEcCCCEEEEeEeCCCCCc--EEEEEECCCceeeEEecCCcccccccCcEEe------eceeEEEcccCcccC
Confidence 34566778899999999999987666 899998654421 111122221 126799999999999
Q ss_pred eEEEEEeecCCC-----CeEEEEEecCCc
Q psy3475 147 GNYTCAPSSSDG-----ASVVVHVLNGKK 170 (207)
Q Consensus 147 g~Y~C~~~n~~~-----~~~~~~v~~~~~ 170 (207)
|.|+|.+.|..+ ..+.+.+...+.
T Consensus 78 G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~ 106 (212)
T 1f97_A 78 GEYTCMVSEEGGQNYGEVSIHLTVLVPPS 106 (212)
T ss_dssp EEEEEEEEETTSSSEEEEEEEEEEEBCCC
T ss_pred eEEEEEEEccCCCcccEEEEEEEEEcCCC
Confidence 999999998633 344566655443
No 384
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=98.95 E-value=2.6e-08 Score=70.06 Aligned_cols=89 Identities=24% Similarity=0.401 Sum_probs=58.9
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEE---Ee-----------cCCCceEEEEecccceEEEEEEecc
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVV---NY-----------SQRGGISVVTEKQTRTSRLVISKAV 142 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~---~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~ 142 (207)
+....+..|+.+.|.|.+.+.+.+...+.|+++ +... .. ....++....+.......|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 86 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT 86 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence 445577899999999999986532227999874 3221 11 1123444443322235689999999
Q ss_pred cCCCeEEEEEeecC--CCCeEEEEEec
Q psy3475 143 TSDSGNYTCAPSSS--DGASVVVHVLN 167 (207)
Q Consensus 143 ~~d~g~Y~C~~~n~--~~~~~~~~v~~ 167 (207)
.+|+|.|.|.+.|. .+....+.|..
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~l~V~~ 113 (210)
T 3d9a_H 87 TEDTATYYCANWDGDYWGQGTLVTVSA 113 (210)
T ss_dssp GGGCEEEEEEETTSSCBCCCEEEEECC
T ss_pred cccCEEEEEEEecCcccccceEEEecc
Confidence 99999999999986 23445666653
No 385
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=98.95 E-value=1.4e-08 Score=73.21 Aligned_cols=75 Identities=36% Similarity=0.513 Sum_probs=52.8
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CE---EEEec---------CCCceEEEEecccceEEEEEEeccc
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--AN---VVNYS---------QRGGISVVTEKQTRTSRLVISKAVT 143 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~---~~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~ 143 (207)
.+..+.+..|+.+.|.|.+.+.+.+ .+.|++. +. .+... ...++....+ ......|.|.+++.
T Consensus 7 ~p~~v~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~ 83 (245)
T 3nfj_J 7 WPATLVQPVGSPLSLECTVEGTSNP--NLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRP-QDRQFILSSKKLLL 83 (245)
T ss_dssp ECSEEEEETTCCEEEEEEEESCSSC--EEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEE-ETTEEEEEESSCCG
T ss_pred CCceEEecCCCCEEEEEEecCCCCc--eEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEec-CCCEEEEEECCCCh
Confidence 4566778899999999999987666 8999982 21 11110 1123333321 13456899999999
Q ss_pred CCCeEEEEEeec
Q psy3475 144 SDSGNYTCAPSS 155 (207)
Q Consensus 144 ~d~g~Y~C~~~n 155 (207)
+|+|.|.|.+.+
T Consensus 84 ~D~G~Y~C~~~~ 95 (245)
T 3nfj_J 84 SDSGFYLCAWSV 95 (245)
T ss_dssp GGCEEEEEEEEC
T ss_pred hhCEEEEEEEee
Confidence 999999999998
No 386
>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C
Probab=98.95 E-value=3.1e-09 Score=67.97 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=45.0
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.|||+.++..+....+... ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 101 (117)
T 2yc1_A 34 MHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDDAKKTLSLQMNSLRAEDTAVYYCARGGV 101 (117)
T ss_dssp EEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence 58999987765554444332 14799988776667899999999999999999998753
No 387
>2d7t_H Anti polyhydroxybutyrate antibody FV, heavy chain; plastic, immune system; 1.70A {Homo sapiens}
Probab=98.95 E-value=2.1e-09 Score=71.04 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=51.2
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~ 68 (207)
|.||||.++..+...++.+. ..+||.+..+...+.++|.|.+++.+|+|.|.|.+..... +.....|.
T Consensus 34 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~fg~GT~L~ 113 (139)
T 2d7t_H 34 MHWVRQAPGQGLEYMGWINPKSGDTNYAQKFQGRVTMTRDTSISTVYMEVRRLRSDDTAVYYCATGWWGMDVWGQGTLVT 113 (139)
T ss_dssp EEEEEECTTSCCEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEE
T ss_pred EEEEEECCCCCCEEEEEEEcCCCceeeCcccCCeEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeeCCcCEECCCEEEE
Confidence 57999988766665554432 1368998876656788999999999999999999875322 33445666
Q ss_pred EEe
Q psy3475 69 VVI 71 (207)
Q Consensus 69 v~~ 71 (207)
|..
T Consensus 114 V~~ 116 (139)
T 2d7t_H 114 VSS 116 (139)
T ss_dssp ECC
T ss_pred Eec
Confidence 654
No 388
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A
Probab=98.95 E-value=1.5e-08 Score=64.16 Aligned_cols=78 Identities=23% Similarity=0.397 Sum_probs=54.0
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEE--EecCCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVV--NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
.|..+.+.+|+.++|.|.+.+...+...+.|++. +... ......++....+.......|.|.+++.+|+|.|.|.+
T Consensus 6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 85 (111)
T 2ywz_A 6 TPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQA 85 (111)
T ss_dssp ECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCCCEEEEEECCCChhcCEEEEEEE
Confidence 4566778899999999999876322338999973 2211 11122344433322335678999999999999999999
Q ss_pred ec
Q psy3475 154 SS 155 (207)
Q Consensus 154 ~n 155 (207)
.+
T Consensus 86 ~~ 87 (111)
T 2ywz_A 86 DY 87 (111)
T ss_dssp EE
T ss_pred Ec
Confidence 88
No 389
>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A
Probab=98.95 E-value=4.3e-09 Score=67.95 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=44.8
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
|.|||+.++..+....+... ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+
T Consensus 36 v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 102 (123)
T 2p45_B 36 MGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRDKGKNTVYLQMDSLKPEDTATYYCAAGG 102 (123)
T ss_dssp EEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECCTTSSEEEEEESSCCGGGCEEEEEEESS
T ss_pred EEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEe
Confidence 58999987766655554432 1468998776666788999999999999999999875
No 390
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...
Probab=98.94 E-value=2.8e-08 Score=62.66 Aligned_cols=75 Identities=19% Similarity=0.358 Sum_probs=53.4
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC--E---EEEec-------CCCceEEEEecccceEEEEEEecccCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA--N---VVNYS-------QRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~--~---~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.|..+.+.+|+.++|.|.+.+.+.+ .+.|++.. . .+... ...++.... ......|.|.+++.+|
T Consensus 9 ~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~D 84 (109)
T 2q20_A 9 SPSSLSASVGDRVTITCQASQDISN--YLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSG--SGTDFTFTISSLQPED 84 (109)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred eCCEEEecCCCcEEEEEeeccCCCC--cEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEec--cCCEEEEEECCCChhh
Confidence 4566778899999999999887654 79999842 1 12111 123444332 2245689999999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
+|.|.|.+.+.
T Consensus 85 sG~Y~C~~~~~ 95 (109)
T 2q20_A 85 IATYYCQQYDN 95 (109)
T ss_dssp CEEEEEEECSS
T ss_pred CEEEEEEEeeC
Confidence 99999999875
No 391
>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1
Probab=98.94 E-value=2.1e-09 Score=68.49 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=44.0
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
|.|||+.++..+......+. ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+
T Consensus 34 v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 99 (114)
T 1sjv_A 34 MGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTAVYYCYTHY 99 (114)
T ss_dssp EEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCSEEEEEECC
T ss_pred EEEEEECCCCCCEEEEEEcCCCcceeCcccCCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEeEEc
Confidence 58999987665554443322 2478998877666788999999999999999999865
No 392
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=98.94 E-value=7.9e-08 Score=67.59 Aligned_cols=87 Identities=16% Similarity=0.334 Sum_probs=59.8
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CE---EEEec-------CCCceEEEEecccceEEEEEEecccC
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--AN---VVNYS-------QRGGISVVTEKQTRTSRLVISKAVTS 144 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~---~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~ 144 (207)
..+..+.+..|+.+.|.|.+.+.+.+ .+.|+++ +. .+... ...++.... ......|.|.+++.+
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 81 (213)
T 3nl4_L 6 QTPASVSEPVGGTVTIKCQASQSISS--YLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSG--SGTDFTLTISDLECA 81 (213)
T ss_dssp EECSEEEEETTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEECSCCGG
T ss_pred eCCCeEEEcCCCCEEEEEEecCCCCc--eEEEEEECCCCCcEEEEEeCCccCCCCCccEEEec--CCCEEEEEECCCChH
Confidence 34666788899999999999998666 8999983 21 12111 122333332 224568999999999
Q ss_pred CCeEEEEEeecCC------CCeEEEEEec
Q psy3475 145 DSGNYTCAPSSSD------GASVVVHVLN 167 (207)
Q Consensus 145 d~g~Y~C~~~n~~------~~~~~~~v~~ 167 (207)
|+|.|+|.+.|.. +....+.+..
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~ 110 (213)
T 3nl4_L 82 DAATYYCQSTYENPTYVSFGGGTEVGVKG 110 (213)
T ss_dssp GCEEEEEEECCSSTTTCEECCCEEEEEEC
T ss_pred HCEEEEEecCCCCceeEEeCCCeEEEEeC
Confidence 9999999999863 2344566654
No 393
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1
Probab=98.94 E-value=2.6e-09 Score=68.87 Aligned_cols=73 Identities=18% Similarity=0.297 Sum_probs=45.2
Q ss_pred CeeEEccCCccceeeEEEEeC-----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc---eeeeEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTN-----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK---ISIGYK 66 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~-----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~ 66 (207)
|.|||+..+.......+.+.. .+|+.+..+...++++|.|.+++.+|+|.|+|.+.+... ....+.
T Consensus 35 v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~ 114 (124)
T 1neu_A 35 FTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVT 114 (124)
T ss_dssp EEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEE
T ss_pred EEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEEccCChhhCEEEEEEEEcCCCCcCcEeeEE
Confidence 579998764222111222211 467776544333566899999999999999999987432 355677
Q ss_pred EEEEecc
Q psy3475 67 LNVVISK 73 (207)
Q Consensus 67 l~v~~~~ 73 (207)
|.|..+|
T Consensus 115 L~V~~~p 121 (124)
T 1neu_A 115 LYVFEKV 121 (124)
T ss_dssp EEEEC--
T ss_pred EEEecCC
Confidence 7776654
No 394
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}
Probab=98.94 E-value=4.2e-09 Score=66.20 Aligned_cols=57 Identities=18% Similarity=0.182 Sum_probs=41.0
Q ss_pred CeeEEccCCccceeeEEEEe-----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 59 (207)
+.||||.++. +...+.... ..+||++..+ ..+.++|+|.+++.+|+|.|.|.+....
T Consensus 30 ~~Wyrq~~g~-~~~li~~~~~~~~~~~~R~s~~~~-~~~~~~L~I~~l~~~Dsg~Y~C~~~~~~ 91 (106)
T 2frg_P 30 KVWCRFLPEG-CQPLVSSAVDRRAPAGRRTFLTDL-GGGLLQVEMVTLQEEDAGEYGCMVDGAR 91 (106)
T ss_dssp EEEEEEETTE-EEEEEECCBTCEEEETTTEEEEEE-ETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEEECCCCC-CcEEEEeCCcEeeecCCCEEEEcC-CCCEEEEEEccCCHHHCEEEEEEeecCC
Confidence 3799999875 433322111 2578987543 4567999999999999999999987643
No 395
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}
Probab=98.94 E-value=3.9e-09 Score=70.14 Aligned_cols=90 Identities=24% Similarity=0.368 Sum_probs=59.1
Q ss_pred EecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCE-EEEe-----cCCCceEEEEecccceEEEEEEecccCCCeEE
Q psy3475 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN-VVNY-----SQRGGISVVTEKQTRTSRLVISKAVTSDSGNY 149 (207)
Q Consensus 76 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y 149 (207)
...+..+.+..|+.++|.|.+.+.+.+ .+.|++.+. .+.. ....++..... ......|.|.+++.+|+|.|
T Consensus 42 ~~~p~~~~v~~G~~v~L~C~~~~~~~~--~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y 118 (145)
T 1z9m_A 42 QPWTSDETVVAGGTVVLKCQVKDHEDS--SLQWSNPAQQTLYFGEKRALRDNRIQLVTS-TPHELSISISNVALADEGEY 118 (145)
T ss_dssp CCBCCCEEEETTSCEEEEEECSCCTTC--CEEEECTTCCEEEETTEECSCCTTEEEEEE-CSSEEEEEECSCCGGGCEEE
T ss_pred ecCCceEEEEcCCCEEEEEEEcCCCCc--EEEEECCCCcEEEECCceecccCCEEEecC-CCCeEEEEECCCChhhCEEE
Confidence 345667888999999999999988766 799995221 1111 01122332211 22456899999999999999
Q ss_pred EEEeecC--CCCeEEEEEecC
Q psy3475 150 TCAPSSS--DGASVVVHVLNG 168 (207)
Q Consensus 150 ~C~~~n~--~~~~~~~~v~~~ 168 (207)
+|.+.|. ......|.|..+
T Consensus 119 ~C~~~n~~~~~~~~~L~V~~~ 139 (145)
T 1z9m_A 119 TCSIFTMPVRTAKSLVTVLGI 139 (145)
T ss_dssp EEEECSSSCEEEEEEEEEECC
T ss_pred EEEEEcCCCceEEEEEEEEeC
Confidence 9999997 122334555543
No 396
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B
Probab=98.94 E-value=9.3e-09 Score=65.29 Aligned_cols=76 Identities=30% Similarity=0.526 Sum_probs=53.5
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC--E-E--EEe-----cCCCceEEEEec-ccceEEEEEEecccCCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA--N-V--VNY-----SQRGGISVVTEK-QTRTSRLVISKAVTSDS 146 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~--~-~--~~~-----~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~ 146 (207)
.|..+.+.+|+.++|.|.+.+.+ + .+.|++.. . . +.. ....++....+. ......|.|.+++.+|+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~-~--~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~Ds 83 (113)
T 1h5b_A 7 SPSALSLHEGTDSALRCNFTTTM-R--SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS 83 (113)
T ss_dssp ECSEEEEETTCCEEEEEEESSCC-S--EEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred CCCEEEEecCCcEEEEEEECCCC-c--eEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhC
Confidence 45667788999999999998743 4 79999732 1 1 111 112344443332 33556899999999999
Q ss_pred eEEEEEeecC
Q psy3475 147 GNYTCAPSSS 156 (207)
Q Consensus 147 g~Y~C~~~n~ 156 (207)
|.|.|.+.|.
T Consensus 84 G~Y~C~~~n~ 93 (113)
T 1h5b_A 84 GTYFCAAEAS 93 (113)
T ss_dssp EEEEEEEECS
T ss_pred EEEEEEEecC
Confidence 9999999986
No 397
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=98.94 E-value=5e-08 Score=68.99 Aligned_cols=90 Identities=17% Similarity=0.294 Sum_probs=60.0
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEEE---e------------cCCCceEEEEecccceEEEEEEe
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVVN---Y------------SQRGGISVVTEKQTRTSRLVISK 140 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~~---~------------~~~~~~~~~~~~~~~~~~l~i~~ 140 (207)
.+....+..|+.+.|.|.+.+.+.+...+.|+++ +..+. . ....++....+.......|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (219)
T 1c1e_H 6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN 85 (219)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence 3455678899999999999986522238999985 33221 0 01234444432223456899999
Q ss_pred cccCCCeEEEEEeecCC-------CCeEEEEEec
Q psy3475 141 AVTSDSGNYTCAPSSSD-------GASVVVHVLN 167 (207)
Q Consensus 141 ~~~~d~g~Y~C~~~n~~-------~~~~~~~v~~ 167 (207)
++.+|+|.|.|.+.|.. +....+.|..
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~ 119 (219)
T 1c1e_H 86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSS 119 (219)
T ss_dssp CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECC
T ss_pred CCcccCEEEEEEEeccCcccceeecCceEEEEec
Confidence 99999999999999864 1344566654
No 398
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=98.94 E-value=7.3e-08 Score=68.61 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=53.8
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEE---EEe------------cCCCceEEEEecccceEEEEEEec
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANV---VNY------------SQRGGISVVTEKQTRTSRLVISKA 141 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~---~~~------------~~~~~~~~~~~~~~~~~~l~i~~~ 141 (207)
+....+..|+.++|.|.+.+.+.....+.|++. +.. +.. ....++....+.......|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (225)
T 1op3_H 7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM 86 (225)
T ss_dssp ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence 344668899999999999886521227999973 221 111 112345444332234578999999
Q ss_pred ccCCCeEEEEEeecCC
Q psy3475 142 VTSDSGNYTCAPSSSD 157 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~~ 157 (207)
+.+|+|.|.|.+.+..
T Consensus 87 ~~~D~G~Y~C~~~~~~ 102 (225)
T 1op3_H 87 RVEDTAIYYCARKGSD 102 (225)
T ss_dssp CGGGCEEEEEEEECCS
T ss_pred ChhhCEEEEEEEecCC
Confidence 9999999999999874
No 399
>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}
Probab=98.94 E-value=1.1e-09 Score=71.07 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=44.3
Q ss_pred CeeEEccCCccceeeEEEEeC---------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTN---------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
|.|||+.++..+...++.... .+||.+..+...+.++|+|.+++.+|+|.|.|.+.+
T Consensus 35 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~~ 100 (126)
T 2h32_A 35 VYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGA 100 (126)
T ss_dssp EEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCCCCeEEEEECCCChhHCEEEEEEEEc
Confidence 579999877655554443221 468998876666788999999999999999999986
No 400
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4
Probab=98.94 E-value=1.2e-08 Score=62.87 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=51.3
Q ss_pred cceEEecCCcEEEEEEEeeC-CCCCcEEEEEeCC-E---EEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEee
Q psy3475 80 SELYIKSGSDINLTCVVLET-PDPPSFIYWYRGA-N---VVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
....+..|+.+.|.|.+.+. +.| .++|.+.+ + .+......+......+......|.|.++..+|+|.|+|.|.
T Consensus 22 S~~tv~~G~~~~LeCpv~yc~~rP--nVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn 99 (122)
T 1xau_A 22 SKHSAWTGELFKIECPVKYCVHRP--NVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTN 99 (122)
T ss_dssp EEEEECTTSCEEEEEEEECSSSCC--CEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEE
T ss_pred ccEEEecCCeEEEEeEecCCCCCC--cEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEee
Confidence 34567889999999999885 577 89999843 2 22111111111111112345689999999999999999999
Q ss_pred cC
Q psy3475 155 SS 156 (207)
Q Consensus 155 n~ 156 (207)
+.
T Consensus 100 ~~ 101 (122)
T 1xau_A 100 FN 101 (122)
T ss_dssp ET
T ss_pred CC
Confidence 96
No 401
>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*
Probab=98.93 E-value=3.7e-09 Score=68.41 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=45.3
Q ss_pred CeeEEccCCccceeeEEEE--e----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTY--T----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~--~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.|||+.++..+....+.+ . ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~g~~~~~l~~~y~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 103 (124)
T 1dlf_H 34 MDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRAEDTGIYYCTGIYY 103 (124)
T ss_dssp EEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEBT
T ss_pred EEEEEECCCCCceEEEEEEeccCCCceeeCcccCCcEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence 5899998876665544442 1 14789988776667899999999999999999998753
No 402
>1xiw_D Immunoglobulin heavy chain variable region; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy3_B
Probab=98.93 E-value=3.4e-09 Score=68.36 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=44.5
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
|.||||.++..+...+..+. ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.+
T Consensus 34 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 100 (122)
T 1xiw_D 34 MNWVKQSHGKNLEWMGLINPYKGVSTYNQKFKDKATLTVDKSSSTAYMELLSLTSEDSAVYYCARSG 100 (122)
T ss_dssp EEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEECCCCCcEEEEEEeccCCceeeCcccCCcEEEEEecCCCEEEEEECCCCHHHCEEEEEEEec
Confidence 58999988766655544432 1468998876656788999999999999999999875
No 403
>3tpk_A Immunoglobulin heavy chain antibody variable DOMA; immunoglobulin heavy chain domains, VHH, complementarity DET regions, CDR, oligomer-specific; 1.30A {Camelidae} PDB: 3ln9_A* 1zv5_A
Probab=98.93 E-value=6.1e-09 Score=68.47 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=45.9
Q ss_pred CeeEEccCCccceeeEEEEeC----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..+......+.. .+||.+..+...+.++|+|.+++.+|+|.|.|.+.+
T Consensus 38 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 104 (136)
T 3tpk_A 38 VIWFRQAPGKEREIVSGISLRKGWTYYADSVKGRFTISQDNAKNTVYLQMNNLKPEDTAMYYCAAAP 104 (136)
T ss_dssp EEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred EEEEEECCCCCcEEEEEEECCCCcEEcCcccCCCEEEEEcCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence 579999887776665554322 378998877766789999999999999999999875
No 404
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=98.93 E-value=3.3e-08 Score=69.87 Aligned_cols=90 Identities=18% Similarity=0.292 Sum_probs=58.2
Q ss_pred CcceEEecCCcEEEEEEEeeCCCC---CcEEEEEeCCEEEEecC-------------CCceEEEEec-ccceEEEEEEec
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDP---PSFIYWYRGANVVNYSQ-------------RGGISVVTEK-QTRTSRLVISKA 141 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~---~~~~~W~~~~~~~~~~~-------------~~~~~~~~~~-~~~~~~l~i~~~ 141 (207)
+..+.+..|+.+.|.|.+.+.|.+ ...+.|++++..+.... ..+.....+. ......|.|.++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v 87 (222)
T 3sbw_C 8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV 87 (222)
T ss_dssp CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence 345567899999999998776533 23799999775442211 1122222111 223468999999
Q ss_pred ccCCCeEEEEEeecC--CCCeEEEEEecC
Q psy3475 142 VTSDSGNYTCAPSSS--DGASVVVHVLNG 168 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~--~~~~~~~~v~~~ 168 (207)
+.+|+|.|+|.+.|. ....+.+.|...
T Consensus 88 ~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~ 116 (222)
T 3sbw_C 88 KLQDAGVYRCMISYGGADYKRITVKVNAP 116 (222)
T ss_dssp CGGGCEEEEEEEESSSEEEEEEEEEEEBC
T ss_pred ccccCeEEEEEEEeCCCceeEEEEEEECC
Confidence 999999999999984 223345555543
No 405
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=98.93 E-value=8.9e-09 Score=73.82 Aligned_cols=83 Identities=24% Similarity=0.416 Sum_probs=61.3
Q ss_pred cceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecCC--
Q psy3475 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD-- 157 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~-- 157 (207)
....+..|+.+.|.|.+.+.|.+ .+.|++++..+........... ......|.|.+++.+|+|.|+|.+.|..
T Consensus 23 ~~~~v~~G~~v~L~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~ 97 (241)
T 3grw_A 23 KLLAVPAANTVRFRCPAAGNPTP--SISWLKNGREFRGEHRIGGIKL---RHQQWSLVMESVVPSDRGNYTCVVENKFGS 97 (241)
T ss_dssp CEEEEETTSEEEEECCEECSSCC--EEEEEETTEECCGGGSTTCCEE---EGGGTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred cceEEcCCCeEEEEEEecCCCCc--eeEEEECCcccCCCCcccceee---eccceEEEEEeCCcccCEEEEEEEeecCCc
Confidence 45678899999999999998777 8999999998765433211111 1234579999999999999999999873
Q ss_pred -CCeEEEEEec
Q psy3475 158 -GASVVVHVLN 167 (207)
Q Consensus 158 -~~~~~~~v~~ 167 (207)
.....+.+..
T Consensus 98 ~~~~~~l~V~~ 108 (241)
T 3grw_A 98 IRQTYTLDVLE 108 (241)
T ss_dssp EEEEEEEEEEC
T ss_pred eEEEEEEEEec
Confidence 2344555554
No 406
>3k1k_C Enhancer; nanobody, antibody-complex, chromophore, luminescence, photoprotein, luminescent protein/immune system complex; HET: GYS; 2.15A {Lama pacos} SCOP: b.1.1.1 PDB: 3miq_E* 3ogo_E*
Probab=98.93 E-value=2.9e-09 Score=68.81 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=45.5
Q ss_pred CeeEEccCCccceeeEEEEeC----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..++........ .+||.+..+...+.++|+|.+++.+|+|.|.|.+.+
T Consensus 36 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~Ca~~~ 102 (123)
T 3k1k_C 36 MRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFTISRDDARNTVYLQMNSLKPEDTAVYYCNVNV 102 (123)
T ss_dssp EEEEEECSSSCCEEEEEECSSSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred EEEEEECCCCCCEEEEEEEcCCCceeeCccccccEEEEEeCCCCEEEEEECCCChhhCEEEEEEEec
Confidence 579999987766655544321 378998887767889999999999999999999864
No 407
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A
Probab=98.93 E-value=2e-08 Score=65.01 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=55.5
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe--CCEEE--EecCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR--GANVV--NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~--~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
..|..+.+.+|+.++|.|.+.+...+...+.|++ .+... ......++....+.......|.|.+++.+|+|.|.|.
T Consensus 5 Q~p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 84 (126)
T 3moq_A 5 QTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQ 84 (126)
T ss_dssp EECSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred ECCceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEEE
Confidence 3456678889999999999987532333899997 23211 1122234444333334567899999999999999999
Q ss_pred eecC
Q psy3475 153 PSSS 156 (207)
Q Consensus 153 ~~n~ 156 (207)
+.+.
T Consensus 85 ~~~~ 88 (126)
T 3moq_A 85 AFYV 88 (126)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9886
No 408
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=98.93 E-value=5e-08 Score=68.82 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=57.6
Q ss_pred ceEEecCCcEEEEEEEeeC-CCCCcEEEEEeC---CE--EEEe-cC----------CCceEEEEecccceEEEEEEeccc
Q psy3475 81 ELYIKSGSDINLTCVVLET-PDPPSFIYWYRG---AN--VVNY-SQ----------RGGISVVTEKQTRTSRLVISKAVT 143 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~-~~~~~~~~W~~~---~~--~~~~-~~----------~~~~~~~~~~~~~~~~l~i~~~~~ 143 (207)
.+.+..|+.+.|.|.+.+. +.+ .+.|++. .. .+.. .. ..++.... ......|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~ 84 (218)
T 3s96_B 9 SASFSLGASAKLTCTLNSQHSTY--TIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS--SGADRYLSISNIQP 84 (218)
T ss_dssp EEEEETTSCEEEEEEECGGGTTC--CEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE--ETTEEEEEESSCCG
T ss_pred cEEECCCCcEEEEEECCCCCCCc--EEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec--CCceEEEEEccCCc
Confidence 6778899999999999998 666 8999982 11 1111 11 12333322 22456799999999
Q ss_pred CCCeEEEEEeecCC--------CCeEEEEEecC
Q psy3475 144 SDSGNYTCAPSSSD--------GASVVVHVLNG 168 (207)
Q Consensus 144 ~d~g~Y~C~~~n~~--------~~~~~~~v~~~ 168 (207)
+|+|.|.|.+.|.. +....+.|...
T Consensus 85 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~ 117 (218)
T 3s96_B 85 EDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQ 117 (218)
T ss_dssp GGCEEEEEEEEEEETTEEEEEECCCEEEEEESC
T ss_pred ccCEEEEEEEecCCCCceeEEEcCcEEEEEecC
Confidence 99999999998864 33456666643
No 409
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=98.92 E-value=2.3e-09 Score=67.55 Aligned_cols=62 Identities=16% Similarity=0.269 Sum_probs=44.0
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC-CceeeeEEEEEEecc
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISK 73 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~ 73 (207)
|.|||.+.. ...+.|+.+..++ +.++|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|
T Consensus 45 v~W~k~g~~---------l~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 45 VVWEKGGQQ---------LAASERLSFPADG--AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp EEEEETTEE---------CCCCSSEECCEET--TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred EEEEECccc---------ccceeeEEEeecC--ceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEEcCC
Confidence 578885421 1235667665443 4568999999999999999999985 456677888887654
No 410
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=98.92 E-value=2.4e-08 Score=71.93 Aligned_cols=88 Identities=23% Similarity=0.422 Sum_probs=58.8
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEe----------------CCEEEEec-CCCceEEEEecccceEEEEEE
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR----------------GANVVNYS-QRGGISVVTEKQTRTSRLVIS 139 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~----------------~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~ 139 (207)
..+..+.+..|+.+.|.|.+.+.+.+ .+.|++ ++...... ...++....+ ......|.|.
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~ 82 (246)
T 4dzb_B 6 QHPSWVISKSGTSVKIECRSLDFQAT--TMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLSTLTVT 82 (246)
T ss_dssp EECSEEEEETTSCEEEEEEESSSCCC--SEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE-ETTEEEEEEC
T ss_pred ECCcEEEEeCCCcEEEEeEecCCCce--EEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec-CCCEEEEEEC
Confidence 34566778899999999999987666 899998 11111110 1123433322 1245689999
Q ss_pred ecccCCCeEEEEEeecCC-------CCeEEEEEec
Q psy3475 140 KAVTSDSGNYTCAPSSSD-------GASVVVHVLN 167 (207)
Q Consensus 140 ~~~~~d~g~Y~C~~~n~~-------~~~~~~~v~~ 167 (207)
+++.+|+|.|.|.+.+.. +....+.|..
T Consensus 83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~ 117 (246)
T 4dzb_B 83 SAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLE 117 (246)
T ss_dssp SCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEES
T ss_pred CCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEec
Confidence 999999999999998652 2445666654
No 411
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Probab=98.92 E-value=6.4e-09 Score=65.86 Aligned_cols=56 Identities=21% Similarity=0.397 Sum_probs=42.1
Q ss_pred CeeEEccCCccceeeEEEEeC-----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYTN-----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~-----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.|||+.++..+......+.. .+||.+..+ .+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 32 v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~L~I~~~~~~DsG~Y~C~~~~~ 98 (111)
T 2qhl_A 32 LAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVN--DQKFDLNIIGTREDDGGEYFCGEVEG 98 (111)
T ss_dssp EEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEES--SSBEEEEESSCCGGGCEEEEEEEEET
T ss_pred EEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEc--CCeEEEEECCCChhHCEEEEEEEccC
Confidence 589999877655544433321 578887653 46789999999999999999999764
No 412
>3k74_B Nanobody; immunoglobulin, antibiotic resista methotrexate resistance, NADP, one-carbon metabolism, oxidoreductase, trimethoprim resistance; 1.95A {Lama glama}
Probab=98.92 E-value=2.7e-09 Score=68.12 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=45.4
Q ss_pred CeeEEccCCccceeeEEEEeC----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..+......+.. .+||.+..+...+.++|+|.+++.+|+|.|.|.+..
T Consensus 32 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 98 (115)
T 3k74_B 32 MYWVRRAPGKGLEWVSMINPGGIITKYAESVKGRFTISRDNAKNTLYLQMNSLTSEDTAVYYCAKDW 98 (115)
T ss_dssp EEEEEECTTCCEEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEST
T ss_pred EEEEEECCCCCeEEEEEEECCCCceeecccccccEEEEEcCCCCEEEEEECCCChHhCEEEEEEEEc
Confidence 589999887766655443321 478998887766789999999999999999999875
No 413
>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A
Probab=98.92 E-value=2.8e-09 Score=68.97 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=45.4
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.||||.++..+......+. ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 100 (124)
T 1yc7_A 34 TGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCG 100 (124)
T ss_dssp EEEEEECTTSCEEEEEEECSTTCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEC
T ss_pred EEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence 58999988766655444331 14689988777667899999999999999999998753
No 414
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*
Probab=98.92 E-value=3.2e-09 Score=67.83 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=47.5
Q ss_pred CeeEEcc-CC-ccceeeEEEE------eCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc---eeeeEEEEE
Q psy3475 1 VSWIRKR-DL-HILTVGILTY------TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK---ISIGYKLNV 69 (207)
Q Consensus 1 v~W~r~~-~~-~~~~~~~~~~------~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v 69 (207)
|.|||+. ++ ..+...++.. ..++|+.+..+...+.++|+|.+++.+|+|.|.|.+...+. ....+.|.|
T Consensus 30 v~W~r~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~v~~~~~~~~~~~~v~L~V 109 (116)
T 3bia_X 30 MCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLEL 109 (116)
T ss_dssp EEEEESSCCSSSCTTEEEEECSSSEEEESSTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEECSSSSCCEEEEEEEEE
T ss_pred EEEeeecCCCCCCceEEEEECCcccccccCceEEEeccCCCCEEEEEEccCChhHCEEEEEEEEcCCcccceEEEEEEEE
Confidence 5799998 65 3333332221 22457776655555678999999999999999999975332 234555555
Q ss_pred Eecc
Q psy3475 70 VISK 73 (207)
Q Consensus 70 ~~~~ 73 (207)
..+|
T Consensus 110 ~~~~ 113 (116)
T 3bia_X 110 RRAL 113 (116)
T ss_dssp ECC-
T ss_pred ecCC
Confidence 5433
No 415
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*
Probab=98.92 E-value=2.4e-09 Score=70.20 Aligned_cols=69 Identities=25% Similarity=0.383 Sum_probs=46.6
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC---c--eeeeEEEEEEeccc
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP---K--ISIGYKLNVVISKA 74 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~--~~~~~~l~v~~~~~ 74 (207)
|.|||+.++..+.... ..++||.+..+. +.++|.|.+++.+|+|.|+|.+.+.. . ......|.|...|.
T Consensus 47 v~W~r~~~g~~~~~l~---~~~~r~~~~~~~--~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~g~gt~L~V~~~p~ 120 (133)
T 3khq_A 47 LTWFRKRGSQQPQELV---SEEGRIVQTQNG--SVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFST 120 (133)
T ss_dssp EEEEEECTTSCCEECC---CTTTTEEEEEET--TEEEEEECSCCGGGCEEEEEEESSCC-------CCCEEEEEC----
T ss_pred EEEEEeCCCCCCEEEE---EeCCCEEEEcCC--CEEEEEECCCChHHCEEEEEEEEeCCCCcceeECCCEEEEEEeccc
Confidence 5899997654433222 356888876543 57889999999999999999998743 1 34567788776443
No 416
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=98.92 E-value=6.2e-08 Score=69.14 Aligned_cols=90 Identities=18% Similarity=0.305 Sum_probs=59.7
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC--EE---EE-ec-----------CCCceEEEEecccceEEEEEEe
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA--NV---VN-YS-----------QRGGISVVTEKQTRTSRLVISK 140 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~--~~---~~-~~-----------~~~~~~~~~~~~~~~~~l~i~~ 140 (207)
.+....+..|+.++|.|.+.+.+.....+.|+++. .. +. .. ...++....+.......|.|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (227)
T 1mju_H 6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS 85 (227)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence 34556788999999999999865212279999842 21 11 11 1234544433223457899999
Q ss_pred cccCCCeEEEEEeecC----CCCeEEEEEec
Q psy3475 141 AVTSDSGNYTCAPSSS----DGASVVVHVLN 167 (207)
Q Consensus 141 ~~~~d~g~Y~C~~~n~----~~~~~~~~v~~ 167 (207)
++.+|+|.|.|.+.+. .+....|.|..
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~ 116 (227)
T 1mju_H 86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSA 116 (227)
T ss_dssp CCGGGCEEEEEEEEETTEEEECCCEEEEECS
T ss_pred CCcccCEEEEEEECCCCceEEcCcEEEEEcC
Confidence 9999999999999885 23345666664
No 417
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=98.92 E-value=7.5e-08 Score=68.17 Aligned_cols=89 Identities=18% Similarity=0.366 Sum_probs=58.4
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC--EE---E-Eec-------------CCCceEEEEecccceEEEEEE
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA--NV---V-NYS-------------QRGGISVVTEKQTRTSRLVIS 139 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~--~~---~-~~~-------------~~~~~~~~~~~~~~~~~l~i~ 139 (207)
+....+..|+.+.|.|.+.+.+.....+.|++++ .. + ... ...++....+.......|.|.
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (220)
T 1pz5_B 7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN 86 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence 4456788999999999998765212389999842 21 1 111 023444443322234589999
Q ss_pred ecccCCCeEEEEEeecCCC------CeEEEEEec
Q psy3475 140 KAVTSDSGNYTCAPSSSDG------ASVVVHVLN 167 (207)
Q Consensus 140 ~~~~~d~g~Y~C~~~n~~~------~~~~~~v~~ 167 (207)
+++.+|+|.|.|.+.+..+ ....+.|..
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~ 120 (220)
T 1pz5_B 87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSS 120 (220)
T ss_dssp SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred cCCHHHCEEEEEEEecCCcccceECCCEEEEEcc
Confidence 9999999999999998631 345666653
No 418
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}
Probab=98.92 E-value=3.6e-08 Score=62.48 Aligned_cols=78 Identities=15% Similarity=0.293 Sum_probs=54.0
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCE-----EEEec-------CCCceEEEEecccceEEEEEEecccCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN-----VVNYS-------QRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~-----~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.|..+.+.+|+.++|.|.+...... ..+.|++... .+... ...++....+.......|.|.+++.+|
T Consensus 7 ~p~~v~~~~G~~v~L~C~~~~~~~~-~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 85 (113)
T 1zox_A 7 GPEEVSGQEQGSLTVQCRYTSGWKD-YKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSD 85 (113)
T ss_dssp CCSEEEEETTSCEEEEEEECGGGTT-SCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred CCCEEEEeCCCcEEEEeECCCCccc-ceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHH
Confidence 4556778899999999999875333 2589998531 22211 123344433223345689999999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
+|.|.|.+.+.
T Consensus 86 sG~Y~C~v~~~ 96 (113)
T 1zox_A 86 AGIYWCGITKG 96 (113)
T ss_dssp CEEEEEEECCS
T ss_pred CEEEEEeeEcC
Confidence 99999999887
No 419
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=98.92 E-value=1.3e-07 Score=67.09 Aligned_cols=88 Identities=20% Similarity=0.359 Sum_probs=58.4
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEE---EE-e-------------cCCCceEEEEecccceEEEEEE
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANV---VN-Y-------------SQRGGISVVTEKQTRTSRLVIS 139 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~---~~-~-------------~~~~~~~~~~~~~~~~~~l~i~ 139 (207)
+..+.+..|+.+.|.|.+.+.+.....+.|++. +.. +. . ....++....+.......|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 86 (221)
T 3m8o_H 7 SGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMN 86 (221)
T ss_dssp ESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEEC
T ss_pred cCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEEC
Confidence 445667899999999999875322338999872 211 10 0 1123455444333456689999
Q ss_pred ecccCCCeEEEEEeecCC-----CCeEEEEEe
Q psy3475 140 KAVTSDSGNYTCAPSSSD-----GASVVVHVL 166 (207)
Q Consensus 140 ~~~~~d~g~Y~C~~~n~~-----~~~~~~~v~ 166 (207)
+++.+|+|.|.|.+.+.. +....+.|.
T Consensus 87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~ 118 (221)
T 3m8o_H 87 SLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVS 118 (221)
T ss_dssp SCCGGGCEEEEEEEESCTTCCCBBCCEEEEEC
T ss_pred CCCHHHCEEEEEEEECCChhheECCCEEEEEe
Confidence 999999999999998862 334566665
No 420
>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1
Probab=98.91 E-value=2.7e-09 Score=68.71 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=44.3
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.|||+.++..+........ ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 100 (121)
T 1kxv_C 34 MSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPSLR 100 (121)
T ss_dssp EEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGCEEEEEEEEES
T ss_pred EEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHHHCEEEEEEEEec
Confidence 57999987765554433322 14789988776667899999999999999999998753
No 421
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B
Probab=98.91 E-value=6.6e-09 Score=65.99 Aligned_cols=58 Identities=29% Similarity=0.396 Sum_probs=42.7
Q ss_pred CeeEEccCCccceeeEEEE---eCCCeEEEeecC-CCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTY---TNDLRFTSLHSD-GSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~---~~~~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.|||+.++..+....+.. ..++|+.+..+. ..+.++|.|.+++.+|+|.|+|.+.+.
T Consensus 32 v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~ 93 (113)
T 1h5b_A 32 VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEAS 93 (113)
T ss_dssp EEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhCEEEEEEEecC
Confidence 5899998665444333221 235788876555 567889999999999999999999874
No 422
>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B
Probab=98.91 E-value=3.4e-09 Score=68.15 Aligned_cols=58 Identities=17% Similarity=0.195 Sum_probs=45.3
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.|||+.++..+....+... ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 101 (120)
T 1mfa_H 34 MHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSEDSAVYYCTRGGH 101 (120)
T ss_dssp EEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 58999988766555444332 14789988776667899999999999999999998753
No 423
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*
Probab=98.91 E-value=2.1e-08 Score=65.62 Aligned_cols=86 Identities=19% Similarity=0.265 Sum_probs=59.5
Q ss_pred EecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEEE--ecCCCceEEEEecccceEEEEEEecccCCCeEEEE
Q psy3475 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVVN--YSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151 (207)
Q Consensus 76 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C 151 (207)
...+....+..|+.++|.|.+.+. + .+.|+++ +.... .....++....+ .....|.|.+++.+|+|.|.|
T Consensus 21 ~q~p~~~~v~~G~~v~L~C~~~~~--~--~v~W~r~~~g~~~~~l~~~~~r~~~~~~--~~~~~L~I~~~~~~DsG~Y~C 94 (133)
T 3khq_A 21 WQHPRFAAKKRSSMVKFHCYTNHS--G--ALTWFRKRGSQQPQELVSEEGRIVQTQN--GSVYTLTIQNIQYEDNGIYFC 94 (133)
T ss_dssp EEECSEEEECTTCCEEEEEEESSS--S--CEEEEEECTTSCCEECCCTTTTEEEEEE--TTEEEEEECSCCGGGCEEEEE
T ss_pred EEcCceEEEeCCCeEEEEEEeCCC--C--EEEEEEeCCCCCCEEEEEeCCCEEEEcC--CCEEEEEECCCChHHCEEEEE
Confidence 344667778899999999999886 4 7899985 32211 112334544432 245689999999999999999
Q ss_pred EeecCC-------CCeEEEEEec
Q psy3475 152 APSSSD-------GASVVVHVLN 167 (207)
Q Consensus 152 ~~~n~~-------~~~~~~~v~~ 167 (207)
.+.|.. +....|.|..
T Consensus 95 ~a~n~~g~~~~~~g~gt~L~V~~ 117 (133)
T 3khq_A 95 KQKCDSANHNVTDSCGTELLVLG 117 (133)
T ss_dssp EESSCC-------CCCEEEEEC-
T ss_pred EEEeCCCCcceeECCCEEEEEEe
Confidence 999873 3345565554
No 424
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=98.91 E-value=3.5e-08 Score=68.31 Aligned_cols=84 Identities=7% Similarity=0.047 Sum_probs=58.0
Q ss_pred eEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEee
Q psy3475 75 KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 75 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
+...+.. .+..|+.++|.|.+.+. .+ .+.|++++..+....... ........|.|.+++.+|+|.|+|.+.
T Consensus 7 i~~~p~~-~v~~G~~v~L~C~~~~~-~~--~~~w~k~g~~~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 77 (188)
T 1oll_A 7 IWAEPHF-MVPKEKQVTICCQGNYG-AV--EYQLHFEGSLFAVDRPKP-----PERINKVKFYIPDMNSRMAGQYSCIYR 77 (188)
T ss_dssp EEEESCS-EEETTCCEEEEEECCTT-CC--EEEEEETTEEEEEECCSS-----CTTCCEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEeecCC-cCCCCCCEEEEEecCCC-CC--EEEEEECCCccccccccc-----CCCcceeEEEeCcCCcccCeEEEEEec
Confidence 3333444 67899999999998653 23 789999998765321100 002245789999999999999999998
Q ss_pred cC-----CCCeEEEEEec
Q psy3475 155 SS-----DGASVVVHVLN 167 (207)
Q Consensus 155 n~-----~~~~~~~~v~~ 167 (207)
|. .+..+.+.|..
T Consensus 78 ~~~~~~~~s~~~~l~V~~ 95 (188)
T 1oll_A 78 VGELWSEPSNLLDLVVTE 95 (188)
T ss_dssp ETTEECCCCCCEEEEEES
T ss_pred CCCCCCCCCCceEEEecc
Confidence 75 23455666653
No 425
>3k3q_A Llama AA1 VHH domain; llama, VHH, antibody, BONT, cell junction, cell membrane, cytoplasm, disulfide bond, hydrolase; 2.60A {Lama glama} SCOP: b.1.1.0
Probab=98.91 E-value=9e-09 Score=68.82 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=46.4
Q ss_pred CeeEEccCCccceeeEEEEeC----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..++..+..+.. .+||++..+...+.++|+|.+++.+|+|.|.|.+..
T Consensus 48 v~WyrQ~pg~~p~~L~~~~~~~~~~~~~~~~~~Rfs~s~~~s~~~~sL~I~~lq~~Dsg~YyCa~~~ 114 (151)
T 3k3q_A 48 MGWFRQAPGKDREFVAAISPRTDETYYAESLEGRFSVSRDAAATMVFLQADNVRLDDTASYYCAADE 114 (151)
T ss_dssp EEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTCEEEECTTSSEEEEEESSCCSTTCEEEEEEEET
T ss_pred EEEEEECCCCCcEEEEEEeCCCCceecCCccCCCEEEEecCCCCEEEEEECCCccccCEEEEEEEec
Confidence 479999998777766554322 378998877767889999999999999999999874
No 426
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=98.90 E-value=4.6e-09 Score=74.08 Aligned_cols=73 Identities=10% Similarity=0.115 Sum_probs=56.7
Q ss_pred cceEEecCCcEEEEEEEee-CCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 80 SELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
....+.+|+.+.|.|.+.+ .|.| .+.|+++|..+..+.+.++ ..+.......|.|.+++.+|+|.|+|.+.|.
T Consensus 10 ~~~~v~eg~~v~l~c~~~~~~P~p--~i~W~kng~~l~~~~~~~~--~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng 83 (207)
T 3rbs_A 10 LAVEILEKGQVRFWMQAEKLSGNA--KVNYIFNEKEIFEGPKYKM--HIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG 83 (207)
T ss_dssp EEEEECGGGCEEEEEECSCCCSCC--EEEEEETTEEECSSSSCEE--EECTTTCEEEEEESCCCGGGCEEEEEEEEET
T ss_pred CceEEEeCCeEEEEEEEecCCCCC--EEEEEECCEECccCCCEEE--EEeCCCCEEEEEECCCChhhCEEEEEEEECC
Confidence 3567889999999999965 4666 8999999999876554333 2222224457999999999999999999994
No 427
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=98.90 E-value=1.9e-08 Score=68.26 Aligned_cols=77 Identities=25% Similarity=0.408 Sum_probs=58.4
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
..+....+..|+.+.|.|.+.+.+.+ ..+.|++++..+... ...+.+.+++.+|.|.|+|.+.|.
T Consensus 9 ~~p~~~~v~~G~~v~l~C~~~~~p~~-~~~~W~~~g~~~~~~--------------~~~~~~~~~~~~d~G~Y~C~~~~~ 73 (170)
T 3ry4_A 9 LEPPWINVLQEDSVTLTCQGARSPES-DSIQWFHNGNLIPTH--------------TQPSYRFKANNNDSGEYTCQTGQT 73 (170)
T ss_dssp EESCCSEEETTCEEEEEEESCCCSSS-SCEEEEETTEECTTC--------------CSSEEEEECCGGGCEEEEEEETTS
T ss_pred eCCCCeEEECCCcEEEEEEecCCCCc-ceEEEEECCeEcccC--------------ccceEEEecccccCeEEEEEEeCC
Confidence 34555678899999999999987522 278999999877533 224567789999999999999987
Q ss_pred -CCCeEEEEEecC
Q psy3475 157 -DGASVVVHVLNG 168 (207)
Q Consensus 157 -~~~~~~~~v~~~ 168 (207)
....+.+.+...
T Consensus 74 ~~s~~~~l~v~~~ 86 (170)
T 3ry4_A 74 SLSDPVHLTVLFE 86 (170)
T ss_dssp BCCCCEEEEEECC
T ss_pred CceEeEEEEEECC
Confidence 555667766653
No 428
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=98.90 E-value=1.7e-08 Score=71.15 Aligned_cols=79 Identities=24% Similarity=0.358 Sum_probs=51.8
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCC-cEEEEEeCCEEEEec--CC------------CceEEEEe-----cccceEEEEE
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPP-SFIYWYRGANVVNYS--QR------------GGISVVTE-----KQTRTSRLVI 138 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~-~~~~W~~~~~~~~~~--~~------------~~~~~~~~-----~~~~~~~l~i 138 (207)
+..+.+..|+.++|.|.+.+.+.+. ..+.|++++..+... .. .+...... .......|.|
T Consensus 8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I 87 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF 87 (225)
T ss_dssp CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence 4456778999999999998876552 248999865432211 00 01111100 0223457999
Q ss_pred EecccCCCeEEEEEeecCC
Q psy3475 139 SKAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 139 ~~~~~~d~g~Y~C~~~n~~ 157 (207)
.+++.+|+|.|+|.+.|..
T Consensus 88 ~~v~~~D~G~Y~C~~~~~~ 106 (225)
T 4fmk_A 88 RGLRVEDEGNYTCEFATFP 106 (225)
T ss_dssp CSCCGGGCEEEEEEEEEET
T ss_pred ccCCHHHCcceEEEEEeCC
Confidence 9999999999999998863
No 429
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A
Probab=98.90 E-value=4.3e-08 Score=62.84 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=53.5
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC-----EEEEec-------CCCceEEEEecccceEEEEEEecccCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA-----NVVNYS-------QRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.+..+.+.+|+.++|.|.+.+.+.+ .+.|++.. ..+... ...++.... ......|.|.+++.+|
T Consensus 9 ~p~~v~v~~G~~vtL~C~~~~~~~~--~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~D 84 (119)
T 2e27_L 9 SPSSLSASLGGKVTITCKANQDIKK--KIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSG--SGRDYSFSISNLEPED 84 (119)
T ss_dssp ECSEEEEETTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEECSCCGGG
T ss_pred cCCeEEEeCCCCEEEEEEeCCCCCc--eEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc--cCCEEEEEECCCChHH
Confidence 4566778899999999999887655 79999832 222211 123444332 2345689999999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
+|.|.|.+.+.
T Consensus 85 sG~Y~C~~~~~ 95 (119)
T 2e27_L 85 AATYYCLQYDN 95 (119)
T ss_dssp CEEEEEEECGG
T ss_pred CEEEEEEEccC
Confidence 99999999875
No 430
>3r0m_A Llama VHH A12; IG domain, immune system; 1.50A {Lama glama} PDB: 3rjq_B* 1g9e_A 1hcv_A 1shm_A 3qxw_A 3qxv_A
Probab=98.90 E-value=6.9e-09 Score=68.72 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=45.8
Q ss_pred CeeEEccCCccceeeEEEEeC----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..+......+.. .+||.+..+...+.++|+|.+++.+|+|.|.|.+..
T Consensus 34 v~WyrQ~pg~~~~~L~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~Dsg~Y~Ca~~~ 100 (143)
T 3r0m_A 34 MGWFRQAPGKEREFVAAISWSGGTTDYADSVKGRFAISKDNAKNAVYLQMNSLKPEDTAVYYCAAKW 100 (143)
T ss_dssp EEEEEECTTSCCEEEEEEETTTCCEEECTTTTTSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEECCCCCCEEEEEEEcCCCcEecCcccCCCEEEEEcCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence 579999988777666554322 378998877666788999999999999999999874
No 431
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=98.90 E-value=7.9e-09 Score=72.01 Aligned_cols=86 Identities=12% Similarity=0.162 Sum_probs=59.2
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
|.+...+. ..+..|+.++|.|.+.+.+ + .+.|++++..+....... ........|.|.+++.+|+|.|+|.
T Consensus 6 P~i~~~p~-~~v~~G~~v~L~C~~~~~~-~--~~~W~k~g~~~~~~~~~~-----~~~~~~~~L~i~~v~~~D~G~Y~C~ 76 (196)
T 2d3v_A 6 ATLWAEPG-SVISRGNSVTIRCQGTLEA-Q--EYRLVKEGSPEPWDTQNP-----LEPKNKARFSIPSMTEHHAGRYRCY 76 (196)
T ss_dssp CEEEEESC-SEEETTCCEEEEEECCTTC-C--EEEEEETTCSSCSEEECC-----CSSTTEEEEEESSCCGGGCEEEEEE
T ss_pred CEEEeCCC-CcccCCCeEEEEEeCCCCC-c--EEEEEECCCCCCcccccc-----cCCccccEEEeccCChhHCeEEEEE
Confidence 44444444 3678999999999987753 3 799999887653211100 0023467899999999999999999
Q ss_pred eecCC-----CCeEEEEEec
Q psy3475 153 PSSSD-----GASVVVHVLN 167 (207)
Q Consensus 153 ~~n~~-----~~~~~~~v~~ 167 (207)
+.|.. +..+.+.|..
T Consensus 77 a~n~~g~~~~s~~~~l~V~~ 96 (196)
T 2d3v_A 77 YYSPAGWSEPSDPLELVVTG 96 (196)
T ss_dssp EEETTEECBCCCCEEEEEEC
T ss_pred EeCCCCcCCcCccEEEEecC
Confidence 98862 3446666665
No 432
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}
Probab=98.90 E-value=1.6e-08 Score=63.67 Aligned_cols=78 Identities=22% Similarity=0.387 Sum_probs=53.7
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEE--EecCCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVV--NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
.|..+.+.+|+.++|.|.+.+...+...+.|++. +... ......++....+.......|.|.+++.+|+|.|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~ 85 (108)
T 2coq_A 6 TPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKA 85 (108)
T ss_dssp ECSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEcCCCCEEEEEECCCCcccCEEEEEEE
Confidence 4566778899999999999875322237999974 2211 11222344433322335678999999999999999999
Q ss_pred ec
Q psy3475 154 SS 155 (207)
Q Consensus 154 ~n 155 (207)
.+
T Consensus 86 ~~ 87 (108)
T 2coq_A 86 YR 87 (108)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 433
>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1
Probab=98.90 E-value=3.8e-09 Score=68.66 Aligned_cols=58 Identities=17% Similarity=0.309 Sum_probs=45.0
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.||||.++..+....+... ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 100 (127)
T 1kxt_B 34 MGWYRQAPGKECELSARIFSDGSANYADSVKGRFTISRDNAANTAYLQMDSLKPEDTAVYYCAAGPG 100 (127)
T ss_dssp EEEEEECTTSCEEEEEEECTTSCEEECTTTTTTEEEEECSSSSEEEEEECSCCGGGCEEEEEEECSS
T ss_pred EEEEEECCCCCcEEEEEEecCCCeeeCcccCCeEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEEcC
Confidence 57999988766655444322 14799988776667899999999999999999998753
No 434
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=98.90 E-value=4e-08 Score=69.03 Aligned_cols=85 Identities=18% Similarity=0.309 Sum_probs=58.2
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEE---EEe-------cCCCceEEEEecccceEEEEEEecccCCC
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANV---VNY-------SQRGGISVVTEKQTRTSRLVISKAVTSDS 146 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~---~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 146 (207)
|....+..|+.+.|.|.+.+.+.+ .+.|+++ +.. +.. ....++.... ......|.|.+++.+|+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~ 82 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTS--RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEADDT 82 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGC
T ss_pred CCcEEEcCCCCEEEEeeCCCccCC--CEEEEEECCCCCeEEEEEccccccCCccccEEEEe--cCCEEEEEECCCCHHHC
Confidence 666778899999999999987766 7999883 221 111 1112333332 22456899999999999
Q ss_pred eEEEEEeecCCC----CeEEEEEec
Q psy3475 147 GNYTCAPSSSDG----ASVVVHVLN 167 (207)
Q Consensus 147 g~Y~C~~~n~~~----~~~~~~v~~ 167 (207)
|.|.|.+.|..+ ....+.|..
T Consensus 83 G~Y~C~~~~~~~~~~~~~~~l~V~~ 107 (210)
T 1lk3_L 83 AIYFCQQSWNGPLTFGAGTKLELKR 107 (210)
T ss_dssp EEEEEEECSSSSCEECCCEEEEECC
T ss_pred eEEEEEEEcCCCceeCCCEEEEEcC
Confidence 999999998732 233555553
No 435
>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*
Probab=98.89 E-value=3.2e-09 Score=68.22 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=44.6
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.|||+.++..+....+... ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.+.
T Consensus 34 v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 101 (120)
T 3b9v_A 34 IGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWGG 101 (120)
T ss_dssp EEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred EEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence 58999987765555444432 14689987765567889999999999999999998753
No 436
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}
Probab=98.89 E-value=5.1e-08 Score=63.41 Aligned_cols=93 Identities=20% Similarity=0.393 Sum_probs=61.9
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--C---EEE-Eec-------CCCceEEEEecccceEEEEEEeccc
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--A---NVV-NYS-------QRGGISVVTEKQTRTSRLVISKAVT 143 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~---~~~-~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~ 143 (207)
..+..+.+.+|+.++|.|.+.+... ...+.|++. + ..+ ... ...++....+.......|.|.+++.
T Consensus 6 Q~P~~~~v~~G~~vtL~C~~s~~~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~ 84 (129)
T 3rrq_A 6 FSPALLVVTEGDNATFTCSFSNTSE-SFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARR 84 (129)
T ss_dssp EECSEEEEETTSCEEEEEECCCCC--CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCG
T ss_pred ECCCEEEEeCCCCEEEEeEecCCCC-CcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCCh
Confidence 3466778889999999999987542 237899872 2 112 111 1234444433334567899999999
Q ss_pred CCCeEEEEEeecCC-------CCeEEEEEecCCc
Q psy3475 144 SDSGNYTCAPSSSD-------GASVVVHVLNGKK 170 (207)
Q Consensus 144 ~d~g~Y~C~~~n~~-------~~~~~~~v~~~~~ 170 (207)
+|+|.|.|.+.+.. +....|.|...+.
T Consensus 85 ~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~~ 118 (129)
T 3rrq_A 85 NDSGTYLCGAISLAPKLQIKESLRAELRVTERRA 118 (129)
T ss_dssp GGCEEEEEEEEECGGGCEEEECCCEEEEEECCCC
T ss_pred hHCEEEEEEEEecCCCceeeEeceEEEEEecCcc
Confidence 99999999998862 4456777775443
No 437
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=98.89 E-value=3e-09 Score=67.91 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=42.6
Q ss_pred CeeEEccCCccceeeEEEEe--------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYT--------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
|.|||+.++..+....+... ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+
T Consensus 33 v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 97 (116)
T 1tvd_A 33 LFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTL 97 (116)
T ss_dssp EEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred EEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccCChHHCEEEEEEEeC
Confidence 58999987655443333211 1588888765555778999999999999999999976
No 438
>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...
Probab=98.89 E-value=2.4e-09 Score=68.46 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=44.2
Q ss_pred CeeEEccCCccceeeEEEEeC---------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYTN---------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.|||+.++..+......+.. .+||.+..+...+.++|.|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 100 (116)
T 1a2y_B 34 VNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERD 100 (116)
T ss_dssp EEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred EEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 589999877655544443321 3689887765567889999999999999999999753
No 439
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C
Probab=98.89 E-value=1e-08 Score=66.05 Aligned_cols=57 Identities=16% Similarity=0.321 Sum_probs=41.6
Q ss_pred CeeEEccCCccceeeEEEEe--------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT--------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.|||+.++..+....+... ..+||.+.. ...+.++|.|.+++.+|+|.|.|.+.+.
T Consensus 32 v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~~~~~ 96 (121)
T 2oi9_C 32 MYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASR-PSQENFSLTLESATPSQTSVYFCASGGG 96 (121)
T ss_dssp EEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEEC-CSSSEEEEEESSCCGGGCEEEEEEEESS
T ss_pred EEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEc-CCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 58999987655553332211 146888765 4456789999999999999999999753
No 440
>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin fold, protein-protein hetero C alpha-beta orthogonal bundle, immune system-hydrolase compl; 1.40A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A 2x6m_A 1zmy_A 1f2x_K
Probab=98.89 E-value=4.5e-09 Score=69.22 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=44.8
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.||||.++..++..+..+. ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 101 (137)
T 1rjc_A 34 MGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPEDTAMYYCAADTS 101 (137)
T ss_dssp EEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGGCEEEEEEECCT
T ss_pred EEEEEECCCCCCEEEEEEECCCCceecCcccCCcEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence 57999998776665555442 14799988776667899999999999999999998753
No 441
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}
Probab=98.89 E-value=2.6e-09 Score=68.05 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=45.2
Q ss_pred CeeEEccCCc--cceeeEEE------EeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCce-eeeEEEEEEe
Q psy3475 1 VSWIRKRDLH--ILTVGILT------YTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKI-SIGYKLNVVI 71 (207)
Q Consensus 1 v~W~r~~~~~--~~~~~~~~------~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~ 71 (207)
|.|||+..+. ......+. ...++|+.+..+...+.++|.|.+++.+|+|.|.|.+.+.+.. .....+.+.+
T Consensus 30 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~l~V 109 (116)
T 2or8_A 30 TCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQV 109 (116)
T ss_dssp EEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGCEEEEEEECCSSTTCCEEEEEEEEE
T ss_pred EEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcccCEEEEEEEEcCCcccccEEEEEEEE
Confidence 5799987431 11111111 2346788865444456778999999999999999999874322 2244444444
Q ss_pred cc
Q psy3475 72 SK 73 (207)
Q Consensus 72 ~~ 73 (207)
+|
T Consensus 110 ~p 111 (116)
T 2or8_A 110 KP 111 (116)
T ss_dssp EC
T ss_pred CC
Confidence 33
No 442
>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E
Probab=98.89 E-value=3.3e-09 Score=69.58 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=45.5
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.||||.++..+...+..+. ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~~~ 101 (134)
T 1zvh_A 34 LGWFRQAPGKEREGVAAVSPAGGTPYYADSVKGRFTVSLDNAENTVYLQMNSLKPEDTALYYCAAARQ 101 (134)
T ss_dssp EEEEEECTTSCCEEEEEECTTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGCEEEEEEEEES
T ss_pred EEEEEECCCCCCEEEEEEEcCCCceecCcccCCcEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 57999988766665544432 13689988776667899999999999999999998753
No 443
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=98.89 E-value=3e-08 Score=69.76 Aligned_cols=83 Identities=24% Similarity=0.412 Sum_probs=58.0
Q ss_pred ceEEecCCcEEEEEEEeeCCCCCcEEEEEe--CCE---EEEec-------CCCceEEEEecccceEEEEEEecccCCCeE
Q psy3475 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYR--GAN---VVNYS-------QRGGISVVTEKQTRTSRLVISKAVTSDSGN 148 (207)
Q Consensus 81 ~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~--~~~---~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 148 (207)
...+..|+.+.|.|.+.+.+.+ .+.|++ .+. .+... ...++.... ......|.|.+++.+|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~ 84 (213)
T 3mj8_L 9 LVSVALGQKATITCSGDKLSDV--YVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN--SGNMATLTISKAQAGDEAD 84 (213)
T ss_dssp EEEEETTSCEEEEEECSSTTTS--CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCGGGCEE
T ss_pred cEEEeCCCCEEEEEEcCCCCCc--eEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe--cCCEEEEEECCCChhhCEE
Confidence 6778899999999999977666 899998 221 11111 112333222 2345689999999999999
Q ss_pred EEEEeecCCC------CeEEEEEec
Q psy3475 149 YTCAPSSSDG------ASVVVHVLN 167 (207)
Q Consensus 149 Y~C~~~n~~~------~~~~~~v~~ 167 (207)
|+|.+.|..+ ....+.|..
T Consensus 85 Y~C~~~~~~~~~~~~~~~~~l~V~~ 109 (213)
T 3mj8_L 85 YYCQSWDGTNSAWVFGSGTKVTVLG 109 (213)
T ss_dssp EEEEEEETTTTEEEEBCCEEEEEEC
T ss_pred EEEEeccCCcceeEEcCceEEEEeC
Confidence 9999999743 345666664
No 444
>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D
Probab=98.89 E-value=3.6e-09 Score=68.34 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=44.9
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.|||+.++..+......+. ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 34 v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 101 (123)
T 2wzp_D 34 MGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSRDSGKNTVYLQMNSLKPEDTAIYYCAARSG 101 (123)
T ss_dssp EEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEEETTEEEEEEEECSCCGGGCEEEEEEEEES
T ss_pred EEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 58999987766655444432 14789988776567789999999999999999998753
No 445
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Probab=98.88 E-value=2.5e-08 Score=63.36 Aligned_cols=79 Identities=18% Similarity=0.372 Sum_probs=54.4
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEEE--EecCCCceEEEEecccceEEEEEEecccCCCeEEEEEe
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANVV--NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 153 (207)
.|..+.+.+|+.++|.|.+.+.+.....+.|++. +... ......++....+.......|.|.+++.+|+|.|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~ 85 (113)
T 1sq2_N 6 TPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGL 85 (113)
T ss_dssp ECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEE
Confidence 4566778899999999999876522237999973 2211 11122344443332345678999999999999999999
Q ss_pred ecC
Q psy3475 154 SSS 156 (207)
Q Consensus 154 ~n~ 156 (207)
.+.
T Consensus 86 ~~~ 88 (113)
T 1sq2_N 86 GVA 88 (113)
T ss_dssp CBT
T ss_pred EeC
Confidence 873
No 446
>2vyr_E Human single domain antibody; zinc, complex, nucleus, human MDM4, immune system, zinc-finger, polymorphism, metal-binding; 2.00A {Homo sapiens} PDB: 1igm_H 2a9n_H* 2a9m_H
Probab=98.88 E-value=4.2e-09 Score=70.67 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=45.9
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..++..++.+. ..+||.+..+...+.++|+|.+++.+|+|.|.|.+..
T Consensus 34 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~ 100 (153)
T 2vyr_E 34 MLWVRQAPGKGLEWVSGINARGYTTYYADSVKGRFTISRDNSKNTLYLQMNSLRTEDTAVYYCAKPW 100 (153)
T ss_dssp EEEEEECTTSCCEEEEEECTTSCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred EEEEEECCCCCcEEEEEEECCCCceeeCCccCCcEEEEEcCCCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 57999998776666555432 1479998887767889999999999999999999865
No 447
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}
Probab=98.88 E-value=6.6e-09 Score=65.47 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=41.5
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
|.|||+.++..+.. ....++||.+..+...+.++|.|.+++.+|+|.|.|.+.+
T Consensus 34 v~W~r~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 87 (108)
T 2coq_A 34 TNWYRTKLGSTKEQ---TISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYR 87 (108)
T ss_dssp EEEEEEETTCCCEE---ECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEcCCCCCcEE---EEEeCCceEEEEcCCCCEEEEEECCCCcccCEEEEEEEEe
Confidence 58999976554332 2234678887655556788999999999999999999975
No 448
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=5e-09 Score=65.12 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=45.7
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEeccc
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~ 74 (207)
|.|||.+.. ...+.|+.+..++ ..+.|.|.+++.+|+|.|+|.+.|. ....++.|.|..+|.
T Consensus 37 v~W~k~g~~---------l~~~~r~~i~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~-~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 37 GKWTKNGLP---------VQESDRLKVVQKG--RIHKLVIANALTEDEGDYVFAPDAY-NVTLPAKVHVISGPS 98 (100)
T ss_dssp EEEEETTEE---------CCCCSSEEEEECS--SEEEEEESSCCGGGCSEEEEEESSS-CCCEEEEEEEECCSC
T ss_pred EEEEECCEE---------CCCCCcEEEEEeC--CEEEEEECCCChhhCEEEEEEEcCC-CeeEEEEEEEeCCCC
Confidence 579986421 1235677765443 4568999999999999999999886 556778888887663
No 449
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=98.88 E-value=2.7e-07 Score=66.45 Aligned_cols=90 Identities=23% Similarity=0.336 Sum_probs=59.9
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CE---EEEe-c-----------CCCceEEEEecccceEEEEEEe
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--AN---VVNY-S-----------QRGGISVVTEKQTRTSRLVISK 140 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~---~~~~-~-----------~~~~~~~~~~~~~~~~~l~i~~ 140 (207)
.+..+.+..|+.++|.|.+.+...+...+.|++. +. .+.. . ...++....+.......|.|.+
T Consensus 7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (242)
T 1hxm_B 7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN 86 (242)
T ss_dssp CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred CCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECC
Confidence 3566778899999999999885222237999973 21 1211 1 2334444433222467899999
Q ss_pred cccCCCeEEEEEeecCC----------CCeEEEEEec
Q psy3475 141 AVTSDSGNYTCAPSSSD----------GASVVVHVLN 167 (207)
Q Consensus 141 ~~~~d~g~Y~C~~~n~~----------~~~~~~~v~~ 167 (207)
++.+|+|.|.|.+.+.. +....|.|..
T Consensus 87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~ 123 (242)
T 1hxm_B 87 VEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITD 123 (242)
T ss_dssp CCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEES
T ss_pred CCcccCEEEEEeeecCCccccccceeEcCcEEEEEcc
Confidence 99999999999998752 2345666765
No 450
>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B
Probab=98.88 E-value=4e-09 Score=67.80 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=44.5
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.|||+.++..+....+... ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 101 (120)
T 1n4x_H 34 MHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 101 (120)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred EEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcc
Confidence 58999988766555444332 13789887765557889999999999999999999753
No 451
>1zvy_A Immunoglobulin heavy chain antibody variable DOMA; beta sandwich, immunoglobulin fold, protein protein heteroco alpha-beta orthogonal bundle, hydrolase-immune system compl; 1.63A {Camelus dromedarius} SCOP: b.1.1.1
Probab=98.88 E-value=3.6e-09 Score=69.61 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=45.8
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.||||.++..++...+... ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 101 (136)
T 1zvy_A 34 MTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGATRK 101 (136)
T ss_dssp EEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECSS
T ss_pred EEEEEECCCCCCEEEEEEeCCCCceeeCcccCCcEEEEEcCCCCEEEEEECCCChhHCEEEEEEEEeC
Confidence 57999998776665554432 24799988766667899999999999999999998753
No 452
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=98.88 E-value=8.1e-08 Score=67.78 Aligned_cols=87 Identities=20% Similarity=0.396 Sum_probs=57.5
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CE--E-EE-e----------cCCCceEEEEecccceEEEEEEec
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--AN--V-VN-Y----------SQRGGISVVTEKQTRTSRLVISKA 141 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~--~-~~-~----------~~~~~~~~~~~~~~~~~~l~i~~~ 141 (207)
.+..+.+.+|+.++|.|.+.+.+.+...+.|++. +. . +. . ....++.... ......|.|.++
T Consensus 5 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v 82 (215)
T 3nl4_H 5 ESGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISK--TSTTVDLKITSP 82 (215)
T ss_dssp EECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEE--CSSEEEEEESSC
T ss_pred cCCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEe--eCCEEEEEECCC
Confidence 3455678899999999999875433348999872 21 1 10 0 1123333332 234567999999
Q ss_pred ccCCCeEEEEEeecCC-------CCeEEEEEe
Q psy3475 142 VTSDSGNYTCAPSSSD-------GASVVVHVL 166 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~~-------~~~~~~~v~ 166 (207)
+.+|+|.|.|.+.+.. +....+.|.
T Consensus 83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~ 114 (215)
T 3nl4_H 83 TTEDTATYFCVRKYGSEWGGDLWGPGTLVTVS 114 (215)
T ss_dssp CGGGCEEEEEEEECSSSSCEEEECCCEEEEEC
T ss_pred CcccCEEEEEEEecCCCccceEEcCCEEEEEe
Confidence 9999999999998872 344566665
No 453
>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B
Probab=98.88 E-value=4.3e-09 Score=67.76 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=44.2
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.|||+.++..+......+. ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 101 (121)
T 1j05_H 34 MHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY 101 (121)
T ss_dssp EEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEBT
T ss_pred EEEEEECCCCCcEEEEEEecCCCceeeCcccCCcEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence 58999987765554444332 13688887665557889999999999999999999764
No 454
>3k81_A Single strand antibody VHH domain; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Lama glama}
Probab=98.87 E-value=5.7e-09 Score=67.70 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=45.3
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..++..+.... ..+||.+..+...+.++|+|.+++.+|+|.|.|.+..
T Consensus 34 v~WyrQ~pg~~~~~L~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~Dsg~Y~Ca~~~ 99 (127)
T 3k81_A 34 WGWYRRAPGKQRELIAAINNEGRTNYVDSVKGRFTVSRDNAKNVMYLQMNSLKPEDTAVYYCNANL 99 (127)
T ss_dssp EEEEEECSSSCEEEEEEECSSCCEEECTTTTTTCEEEEETTTTEEEEEEESBCTTTCEEEEEECCC
T ss_pred EEEEEECCCCCCEEEEEEECCCceEcCCcccCCEEEEEcCCCCEEEEEECCCChhhCEEEEEEEee
Confidence 57999998877665554422 1478998887777889999999999999999998863
No 455
>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A
Probab=98.87 E-value=3.6e-09 Score=68.75 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=45.0
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.||||.++..+...++.+. ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 101 (127)
T 2x1q_A 34 MGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRDNAKNLLYLEMLSLEPEDTAVYYCAASSR 101 (127)
T ss_dssp EEEEEECTTSCCEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred EEEEEECCCCCCEEEEEEecCCCceeeCcccCCcEEEEEeCCCCEEEEEEcCCCHHHCEEEEEEEEec
Confidence 58999988766655544332 14789988766567889999999999999999998753
No 456
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.87 E-value=7.2e-10 Score=84.27 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=69.9
Q ss_pred CCeEEEEEEecCCceeeeEEEEEEeccceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEE
Q psy3475 47 DSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV 126 (207)
Q Consensus 47 d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 126 (207)
|.|.|+|.+.+. -..+.+.+-.+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.......
T Consensus 136 ~~~~~~C~~~~~---l~~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p--~i~W~~~~~~~~~~~~~~---- 206 (347)
T 2ifg_A 136 PEQKLQCHGQGP---LAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLE--QAGWILTELEQSATVMKS---- 206 (347)
T ss_dssp GGGCCCCSSSSC---SSCCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCC--CCCEEESCCCSSEEECCC----
T ss_pred cccCCCCCCChH---HhcCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCC--EEEEEcCCceeecccccc----
Confidence 568899977541 11111222345556566677788899999999999998877 789999876543221100
Q ss_pred EecccceEEEEEEecccCCCe-EEEEEeecC
Q psy3475 127 TEKQTRTSRLVISKAVTSDSG-NYTCAPSSS 156 (207)
Q Consensus 127 ~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~n~ 156 (207)
.......|.|.+++.+|.| .|+|.+.|.
T Consensus 207 --~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~ 235 (347)
T 2ifg_A 207 --GGLPSLGLTLANVTSDLNRKNVTCWAEND 235 (347)
T ss_dssp --CCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred --eecccceEEEeeCChHHCCCeEEEEEEcC
Confidence 0235678999999999999 999999998
No 457
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=98.87 E-value=1.4e-07 Score=66.91 Aligned_cols=79 Identities=18% Similarity=0.396 Sum_probs=53.2
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEE---EEe--------------cCCCceEEEEecccceEEEEEE
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANV---VNY--------------SQRGGISVVTEKQTRTSRLVIS 139 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~---~~~--------------~~~~~~~~~~~~~~~~~~l~i~ 139 (207)
+....+..|+.+.|.|.+.+.+.....+.|++. +.. +.. ....++....+.......|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (222)
T 1q9r_B 7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN 86 (222)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence 344567899999999999886522237999973 221 110 0123444443322345689999
Q ss_pred ecccCCCeEEEEEeecCC
Q psy3475 140 KAVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 140 ~~~~~d~g~Y~C~~~n~~ 157 (207)
+++.+|+|.|.|.+.+..
T Consensus 87 ~v~~~D~G~Y~C~~~~~~ 104 (222)
T 1q9r_B 87 TLRAEDSATYYCARDHDG 104 (222)
T ss_dssp SCCGGGCEEEEEEECCCS
T ss_pred cCCcccCeEEEEEEeccC
Confidence 999999999999999863
No 458
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A
Probab=98.87 E-value=1.1e-08 Score=65.42 Aligned_cols=89 Identities=16% Similarity=0.328 Sum_probs=57.7
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEec-C----------CCceEEEEecccceEEEEEEecccCC
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYS-Q----------RGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
..+..+.+..|+.++|.|.+.+.......+.|++++..+... . ..|+.. .....|.|.+++.+|
T Consensus 8 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~-----~~~~sL~I~~v~~~D 82 (117)
T 3q0h_A 8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP-----GPGLGLTLQSLTVND 82 (117)
T ss_dssp EESCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEE-----CSTTCEEECSCCGGG
T ss_pred EccCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEe-----CCceEEEEeeCChhh
Confidence 345667888999999999998732222378999976544221 1 123321 123579999999999
Q ss_pred CeEEEEEeec-CC---CCeEEEEEecCCc
Q psy3475 146 SGNYTCAPSS-SD---GASVVVHVLNGKK 170 (207)
Q Consensus 146 ~g~Y~C~~~n-~~---~~~~~~~v~~~~~ 170 (207)
+|.|+|.+.+ .. ...+.|.|+.++.
T Consensus 83 ~G~Y~C~v~~~~~g~~~~~~~L~V~~pp~ 111 (117)
T 3q0h_A 83 TGEYFCIYHTYPDGTYTGRIFLEVLESSV 111 (117)
T ss_dssp CEEEEEEEEEETTCCEEEEEEEEEECC--
T ss_pred CEEEEEEEEECCCCCeEEEEEEEEEccCc
Confidence 9999999754 32 2335666665443
No 459
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=98.87 E-value=1.6e-07 Score=66.69 Aligned_cols=89 Identities=17% Similarity=0.295 Sum_probs=58.8
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CE---EEEe-c-----------CCCceEEEEecccceEEEEEEec
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--AN---VVNY-S-----------QRGGISVVTEKQTRTSRLVISKA 141 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~---~~~~-~-----------~~~~~~~~~~~~~~~~~l~i~~~ 141 (207)
+....+..|+.++|.|.+.+.+.....+.|++. +. .+.. . ...++....+.......|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (220)
T 2fbj_H 7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV 86 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence 345678899999999999876521227999973 21 1211 0 12345544332234568999999
Q ss_pred ccCCCeEEEEEeecCC------CCeEEEEEec
Q psy3475 142 VTSDSGNYTCAPSSSD------GASVVVHVLN 167 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~~------~~~~~~~v~~ 167 (207)
+.+|+|.|.|.+.+.. +....|.|..
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~ 118 (220)
T 2fbj_H 87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSA 118 (220)
T ss_dssp CGGGCEEEEEEEEETTTEEEEECCCEEEEECS
T ss_pred ChhhCEEEEEEEeccccccceecCCEEEEecC
Confidence 9999999999999863 2334666664
No 460
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*
Probab=98.87 E-value=3.4e-09 Score=67.68 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=43.7
Q ss_pred CeeEEccCCccceeeEEEEe------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYT------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
|.|||+.++..+....+... .++||.+..+...+.++|+|.+++.+|+|.|.|.+.+
T Consensus 33 v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 95 (116)
T 1fo0_A 33 LFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRG 95 (116)
T ss_dssp EEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEc
Confidence 58999987765555444331 1478888655566788999999999999999999975
No 461
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=98.87 E-value=9.8e-08 Score=67.46 Aligned_cols=89 Identities=18% Similarity=0.304 Sum_probs=58.9
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEE---EEe-----------cCCCceEEEEecccceEEEEEEecc
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANV---VNY-----------SQRGGISVVTEKQTRTSRLVISKAV 142 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~---~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~ 142 (207)
+....+..|+.+.|.|.+.+.+.....+.|+++ +.. +.. ....++....+.......|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ 86 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence 445677899999999999886432237999974 221 111 0123444443322345689999999
Q ss_pred cCCCeEEEEEeecCC------CCeEEEEEec
Q psy3475 143 TSDSGNYTCAPSSSD------GASVVVHVLN 167 (207)
Q Consensus 143 ~~d~g~Y~C~~~n~~------~~~~~~~v~~ 167 (207)
.+|+|.|.|.+.+.. +....|.|..
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~ 117 (215)
T 1c5d_H 87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSS 117 (215)
T ss_dssp GGGCEEEEEEECCSSSCSCCBCCCEEEEECS
T ss_pred cccCEEEEEEEecCCcccceEcCCEEEEecC
Confidence 999999999999862 2345666663
No 462
>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}
Probab=98.86 E-value=7e-09 Score=66.95 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=45.2
Q ss_pred CeeEEccCCccceeeEEEEeC---------CCeEEEeecC-CCCcEEEEEcccCCCCCeEEEEEEecC--CceeeeEEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTN---------DLRFTSLHSD-GSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLN 68 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~---------~~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~ 68 (207)
|.|||+............... .+|+.+.... ..++++|.|.+++.+|+|.|+|.+.+. +.....+.|.
T Consensus 35 V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~t~~~g~~~~~~~L~ 114 (123)
T 4gjt_B 35 VAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLR 114 (123)
T ss_dssp EEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEESCCSSSCSEEEEEEEESSSCEEEEEEEEE
T ss_pred EEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECCCChHHCEEEEEEEEECCCCeEEeEEEEE
Confidence 579998765444332222211 2566654322 345678999999999999999998753 3455667777
Q ss_pred EEe
Q psy3475 69 VVI 71 (207)
Q Consensus 69 v~~ 71 (207)
|.+
T Consensus 115 VlE 117 (123)
T 4gjt_B 115 VLE 117 (123)
T ss_dssp C--
T ss_pred EEE
Confidence 755
No 463
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=98.86 E-value=1.1e-08 Score=64.06 Aligned_cols=64 Identities=14% Similarity=0.340 Sum_probs=48.3
Q ss_pred EEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEeecC
Q psy3475 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 83 ~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
.+..|++++|.|.+.+.+ . .+.|++++..+..... ........|.|.+++.+|+|.|.|.+.|.
T Consensus 15 ~v~~G~~VtL~C~~~~~~-~--~~~w~k~g~~~~~~~~-------~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~ 78 (105)
T 2vsd_A 15 GVSLGDTVTLRCHLPRMA-A--WVQLWLNGTLRFDKEK-------DKEQDAAEFSFAVTNLEDAGTYQCRYQVS 78 (105)
T ss_dssp SCCTTCEEEEEEECCSSC-E--EEEEEETTEEEEEEEE-------CTTCSEEEEEEECCSGGGCEEEEEEEEEE
T ss_pred CcCcCCCEEEEEEcCCCC-c--EEEEEECCccceeeec-------cCCCCEEEEEECCCCHHHCeEEEEEEEcC
Confidence 577899999999987642 2 6789999876542110 01234578999999999999999999884
No 464
>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H
Probab=98.86 E-value=3.9e-09 Score=68.61 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=44.7
Q ss_pred CeeEEccCCccceeeEEEEeC----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.|||+.++..+....+.+.. .+||.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 101 (127)
T 1mqk_H 34 MSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRHEY 101 (127)
T ss_dssp EEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEEECCCCCCEEEEEEecCCCcEEcCcccCCCEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 579999887666555443321 3689888765567889999999999999999998753
No 465
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...
Probab=98.86 E-value=3.8e-08 Score=63.18 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=53.4
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CE---EEEec-------CCCceEEEEecccceEEEEEEecccCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--AN---VVNYS-------QRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~---~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.|..+.+..|+.++|.|.+.+.+.+ .+.|++. +. .+... ...++.... ......|.|.+++.+|
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~D 82 (120)
T 1mqk_L 7 TPVSLSASVGETVTITCRASENIYS--YLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG--SGTQFSLKINSLLPED 82 (120)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred cCCeEEEcCCCcEEEEEEeCCCCCc--eEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEec--cCCEEEEEECCCCHHH
Confidence 3556778899999999999887655 7999983 22 12111 123444332 2245689999999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
+|.|.|.+.+.
T Consensus 83 sG~Y~C~~~~~ 93 (120)
T 1mqk_L 83 FGSYYCQHHYG 93 (120)
T ss_dssp CEEEEEEECSS
T ss_pred CEEEEEEEEeC
Confidence 99999999885
No 466
>3eak_A NBBCII10-FGLA; antibody, nanobody, humanization, VHH domain, immune system; 1.95A {Camelus dromedarius} SCOP: b.1.1.1
Probab=98.86 E-value=4e-09 Score=69.42 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=45.5
Q ss_pred CeeEEccCCccceeeEEEEeC----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTN----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..++.....+.. .+||.+..+...+.++|+|.+++.+|+|.|.|.+..
T Consensus 37 v~WyrQ~pg~~~~~L~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~Dsg~YyCa~~~ 103 (137)
T 3eak_A 37 LGWFRQAPGQGLEAVAAIASMGGLTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAAVR 103 (137)
T ss_dssp EEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEES
T ss_pred EEEEEECCCCCCEEEEEEecCCCceecCCccCCCEEEEecCCCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 579999988777666554322 368998877666788999999999999999999875
No 467
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=98.86 E-value=1e-08 Score=64.22 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=40.0
Q ss_pred CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCceeeeEEEEEEecc
Q psy3475 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISK 73 (207)
Q Consensus 21 ~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~ 73 (207)
.++|+.+..... +..+|.|.+++.+|+|.|+|.+.+.+.....+.|.|..+|
T Consensus 57 ~~~r~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~L~V~~~P 108 (108)
T 3m45_A 57 RDNRIELVRASW-HELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP 108 (108)
T ss_dssp CCTTEEEEEESS-SEEEEEECSCCGGGCEEEEEEECSSSCEEEEEEEEEECCC
T ss_pred ccCcEEEeecCC-CcEEEEECCCChhHCeEEEEEEEcCCCcEEEEEEEEEcCC
Confidence 356777654432 5779999999999999999999884456777788887654
No 468
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=98.86 E-value=5.8e-08 Score=67.87 Aligned_cols=88 Identities=14% Similarity=0.146 Sum_probs=56.9
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
|.+...+. ..+.+|+.++|.|.+.+ +.+ .+.|+++|..+....... .. ........|.|.+++.+|+|.|+|.
T Consensus 9 P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~--~~~w~k~g~~~~~~~~~~-~~--~~~~~~~~l~I~~v~~~D~G~Y~C~ 81 (201)
T 1nkr_A 9 PSLLAHPG-PLVKSEETVILQCWSDV-MFE--HFLLHREGMFNDTLRLIG-EH--HDGVSKANFSISRMTQDLAGTYRCY 81 (201)
T ss_dssp CEEEEESC-SEEETTCCEEEEEEESS-CCS--EEEEEEESSSCEEEEEEC-EE--ETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred CeEEEEcC-CccCCCCcEEEEEeccC-CCC--EEEEEECCCcCCcceeee-ec--CCCCceEEEEeccCCcccCeEEEEe
Confidence 33333343 56789999999999864 444 899999886543211000 00 0012356899999999999999999
Q ss_pred eecC--------CCCeEEEEEec
Q psy3475 153 PSSS--------DGASVVVHVLN 167 (207)
Q Consensus 153 ~~n~--------~~~~~~~~v~~ 167 (207)
+.+. .+..+.+.|..
T Consensus 82 a~~~~~~~~~~~~s~~~~l~V~~ 104 (201)
T 1nkr_A 82 GSVTHSPYQVSAPSDPLDIVIIG 104 (201)
T ss_dssp EEBTTBTTCCCCCCCCEEEEEEC
T ss_pred EecCCCCccccCCCCCEEEEeec
Confidence 9753 13345666654
No 469
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A
Probab=98.86 E-value=6.7e-09 Score=67.31 Aligned_cols=54 Identities=26% Similarity=0.451 Sum_probs=43.0
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..+... ...++||.+..+.+.+.++|+|.+++.+|+|.|.|.+.+
T Consensus 34 v~Wyrq~~g~~~~~l---i~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~ 87 (126)
T 3moq_A 34 TGWYRTKLGSTNEQS---ISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY 87 (126)
T ss_dssp EEEEEEETTCCCCEE---CCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEeCCCCCceEE---EEeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEEEEEE
Confidence 579999876554332 234688988777767789999999999999999999976
No 470
>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}
Probab=98.86 E-value=1.9e-08 Score=66.22 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=48.5
Q ss_pred CeeEEccCCccceeeEEEEeC-----------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCCc--eeeeEEE
Q psy3475 1 VSWIRKRDLHILTVGILTYTN-----------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKL 67 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~-----------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l 67 (207)
|.||||.++..+...+..+.. .+||.+..+ .+.++|+|.+++.+|+|.|.|.+.+... ......|
T Consensus 32 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~Rf~~~~~--~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~fg~GT~L 109 (137)
T 3bdb_A 32 LAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVN--DQKFDLNIIGAREDDGGEYFCGEVEGIIIKFTSGTRL 109 (137)
T ss_dssp BEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEES--SSBEEEEEESCCSTTCEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEEECCCCCCEEEEEEEcCCCcceecCcccCCcEEEEec--CCEEEEEECCCCHHHCEEEEEEEccCCeEEECCCEEE
Confidence 589999887666555443311 478887653 4678999999999999999999976432 2344455
Q ss_pred EEEe
Q psy3475 68 NVVI 71 (207)
Q Consensus 68 ~v~~ 71 (207)
.|..
T Consensus 110 ~V~~ 113 (137)
T 3bdb_A 110 QFEG 113 (137)
T ss_dssp CCCC
T ss_pred EEEC
Confidence 5544
No 471
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=98.85 E-value=3.8e-08 Score=61.79 Aligned_cols=75 Identities=17% Similarity=0.360 Sum_probs=53.0
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC--E---EEEec-------CCCceEEEEecccceEEEEEEecccCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA--N---VVNYS-------QRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~--~---~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.|..+.+.+|+.++|.|.+.+.+.+ .+.|++.. . .+... ...++.... ......|.|.+++.+|
T Consensus 7 ~p~~~~~~~G~~v~L~C~~~~~~~~--~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D 82 (107)
T 1i8k_A 7 SPASLSVATGEKVTIRCMTSTDIDD--DMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG--TGTDFVFTIENTLSED 82 (107)
T ss_dssp ECSEEECCTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred CCCeEEecCCCCEEEEEEECCCCCC--cEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEc--cCCEEEEEECCCCHHH
Confidence 3556778899999999999886644 79999732 1 22211 123444332 2245689999999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
+|.|.|.+.+.
T Consensus 83 sG~Y~C~~~~~ 93 (107)
T 1i8k_A 83 VGDYYCLQSFN 93 (107)
T ss_dssp CEEEEEEECSS
T ss_pred CEEEEEEEeeC
Confidence 99999999875
No 472
>3iy0_H FAB 14, heavy domain; cryoem, neutralizing antibody, parvovirus, canine, feline, FAB footprint, immune system; 12.50A {Mus musculus}
Probab=98.85 E-value=5.9e-09 Score=67.02 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=45.3
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
+.||||.++..+...+..+. ..+||++..+...+.++|+|.+++.+|+|.|.|.+..
T Consensus 34 ~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 100 (120)
T 3iy0_H 34 MNWVRQRPGAGLEWIGWIFPGDGSARGNEKFGGAAALAAAAAGGTAYMGLGGLSSEDSGVYFCARRG 100 (120)
T ss_dssp EEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred EEEEEECCCCCCEEEEEEeCCCCceecChhhcCcEEEEEecCCCEEEEEECCCChHHCEEEEEEEEe
Confidence 58999988776665554432 1478998877666889999999999999999999864
No 473
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Probab=98.85 E-value=9e-09 Score=65.43 Aligned_cols=54 Identities=24% Similarity=0.487 Sum_probs=42.0
Q ss_pred CeeEEccCCccceeeEEEEeCCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
|.|||+.++..+.. .+..++||.+..+.....++|+|.+++.+|+|.|.|.+.+
T Consensus 34 v~W~r~~~g~~~~~---~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 87 (113)
T 1sq2_N 34 TCWYRKKSGEGNEE---SISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV 87 (113)
T ss_dssp EEEEEEETTSCCCE---ECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred EEEEEeCCCCCceE---eEEeCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence 58999976544332 2234678987766666788999999999999999999976
No 474
>1jtp_A Single-domain antibody; immunoglobulin, heavy chain antibody, VHH, interface, binding, antibody, hydrolase; 1.90A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1jto_A 1mel_A 2x89_A
Probab=98.85 E-value=8.4e-09 Score=68.82 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=45.7
Q ss_pred CeeEEccCCccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
|.||||.++..+....+.+. ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+
T Consensus 34 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 100 (148)
T 1jtp_A 34 MGWFRQAPGKEREGVAAINMGGGITYYADSVKGRFTISQDNAKNTVYLLMNSLEPEDTAIYYCAADS 100 (148)
T ss_dssp EEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEECCTTSEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEECCCCCcEEEEEEECCCCceeeCCccCCcEEEEEcCCCCEEEEEECcCChhHCEEEEEEEEc
Confidence 57999988766665555432 1479998877667889999999999999999999875
No 475
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=98.85 E-value=2.1e-08 Score=63.08 Aligned_cols=75 Identities=20% Similarity=0.437 Sum_probs=52.3
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC-----EEEEec-------CCCceEEEEecccceEEEEEEecccCC
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA-----NVVNYS-------QRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
.|..+.+.+|+.++|.|.+.+.+.+ .+.|++.. ..+... ...++.... ......|.|.+++.+|
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D 82 (108)
T 1qfw_M 7 SPKSMSMSVGERVTLSCKASETVDS--FVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSG--SATDFTLTISSVQAED 82 (108)
T ss_dssp ECSCEECCTTCCEEEEEEESSCCCS--CEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCB--CSSEEEEEESSCCTTC
T ss_pred eCCeEEEcCCCCEEEEeeeCCCCCc--EEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEc--CCCEEEEEECCCChhh
Confidence 3556778899999999999887644 79999732 222211 112333221 2245689999999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
+|.|.|.+.+.
T Consensus 83 sG~Y~C~~~~~ 93 (108)
T 1qfw_M 83 FADYHCGQTYN 93 (108)
T ss_dssp CSEEEEEECSS
T ss_pred CEEEEEEEccC
Confidence 99999999885
No 476
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=98.85 E-value=5.5e-08 Score=68.38 Aligned_cols=86 Identities=23% Similarity=0.310 Sum_probs=57.2
Q ss_pred CcceEEecCCcEEEEEEEeeCCCC-CcEEEEEeC--CEEE---Ee-------cCCCceEEEEecccceEEEEEEecccCC
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDP-PSFIYWYRG--ANVV---NY-------SQRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~-~~~~~W~~~--~~~~---~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
|....+..|+.+.|.|.+.+.+.+ ...+.|+++ +..+ .. ....++.... ......|.|.+++.+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D 84 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGDKAALTITGAQTED 84 (212)
T ss_dssp CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe--eCCEEEEEECCCCccC
Confidence 566778899999999999887631 127899884 2222 10 1122333322 1245689999999999
Q ss_pred CeEEEEEeecCC----CCeEEEEEe
Q psy3475 146 SGNYTCAPSSSD----GASVVVHVL 166 (207)
Q Consensus 146 ~g~Y~C~~~n~~----~~~~~~~v~ 166 (207)
+|.|.|.+.|.. +....+.|.
T Consensus 85 ~G~Y~C~~~~~~~~~~~~~~~l~V~ 109 (212)
T 1q0x_L 85 EAIYFCALWSNNKLVFGGGTKLTVL 109 (212)
T ss_dssp CEEEEEEEECSSCEEECCCEEEEEC
T ss_pred CEEEEEEEecCchhhcCCCeEEEEe
Confidence 999999999873 233455554
No 477
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}
Probab=98.85 E-value=6.1e-10 Score=66.18 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=47.5
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEec-ccCCCeEEEEEeec
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA-VTSDSGNYTCAPSS 155 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~Y~C~~~n 155 (207)
|....+..|+.++|.|.+.+.| .|.|+++|..+... ....|.|.++ ..+|+|.|+|.|.+
T Consensus 6 p~~~v~~~G~~v~L~C~~~g~P----~i~W~kdg~~l~~~-------------~~~~L~I~~v~~~~DsG~Y~C~A~t 66 (82)
T 3r08_E 6 IEYKVSISGTSVELTCPLDSDE----NLKWEKNGQELPQK-------------HDKHLVLQDFSEVEDSGYYVCYTPA 66 (82)
T ss_dssp CCCEEEEETTEEEEECSSCCCS----SCEEEETTEECTTC-------------CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred CceeEEEcCCeEEEEEECCCCC----cEEEEECCEECcCC-------------CCCEEEECccCccCcCEEEEEEEcc
Confidence 3445567899999999999875 27999999987532 1347899996 77999999999976
No 478
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=98.85 E-value=1.7e-07 Score=66.66 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=53.4
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CE---EEEe------------cCCCceEEEEecccceEEEEEEec
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--AN---VVNY------------SQRGGISVVTEKQTRTSRLVISKA 141 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~---~~~~------------~~~~~~~~~~~~~~~~~~l~i~~~ 141 (207)
+..+.+..|+.+.|.|.+.+.+.....+.|++. +. .+.. ....++....+.......|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (223)
T 1dee_B 7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL 86 (223)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence 345678899999999999876421227999973 21 1211 112345544332234568999999
Q ss_pred ccCCCeEEEEEeecC
Q psy3475 142 VTSDSGNYTCAPSSS 156 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~ 156 (207)
+.+|+|.|.|.+.+.
T Consensus 87 ~~~D~G~Y~C~~~~~ 101 (223)
T 1dee_B 87 RAEDTAVYYCAKVKF 101 (223)
T ss_dssp CGGGCEEEEEEEESS
T ss_pred CHHHCEEEEEEEecc
Confidence 999999999999886
No 479
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=98.85 E-value=2.1e-07 Score=67.91 Aligned_cols=90 Identities=14% Similarity=0.314 Sum_probs=59.4
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CEE---EE-ec-----------CCCceEEEEecccceEEEEEEe
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--ANV---VN-YS-----------QRGGISVVTEKQTRTSRLVISK 140 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~~---~~-~~-----------~~~~~~~~~~~~~~~~~l~i~~ 140 (207)
.+....+..|+.++|.|.+.+.+.....+.|+++ +.. +. .. ...++....+.......|.|.+
T Consensus 12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 91 (261)
T 2xqy_G 12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS 91 (261)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence 3556678899999999999886521227999974 221 11 11 1234544433223456899999
Q ss_pred cccCCCeEEEEEeecCC------CCeEEEEEec
Q psy3475 141 AVTSDSGNYTCAPSSSD------GASVVVHVLN 167 (207)
Q Consensus 141 ~~~~d~g~Y~C~~~n~~------~~~~~~~v~~ 167 (207)
++.+|+|.|.|.+.+.. +....|.|..
T Consensus 92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~ 124 (261)
T 2xqy_G 92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSS 124 (261)
T ss_dssp CCGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred CCcccCeEEEEEEecCCCcceEECCCEEEEEcc
Confidence 99999999999999852 2334666654
No 480
>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1; 1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A
Probab=98.85 E-value=5.4e-09 Score=67.92 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=44.7
Q ss_pred CeeEEccCCccceeeEEEE-----e----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTY-----T----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~-----~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
|.||||.++..+......+ . ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 34 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 106 (127)
T 1i3u_A 34 IGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNSLKPEDTAVYYCAAKTT 106 (127)
T ss_dssp EEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESC
T ss_pred EEEEEECCCCCcEEEEEEEeccccCCCcceeeCcccCCeEEEEEcCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence 5899998876665544432 1 14789988765557889999999999999999998753
No 481
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=98.85 E-value=3.7e-08 Score=69.06 Aligned_cols=79 Identities=18% Similarity=0.318 Sum_probs=52.7
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCC-cEEEEEeCCEEEEe------cCC----------CceEEEEec-ccceEEEEEE
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPP-SFIYWYRGANVVNY------SQR----------GGISVVTEK-QTRTSRLVIS 139 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~-~~~~W~~~~~~~~~------~~~----------~~~~~~~~~-~~~~~~l~i~ 139 (207)
.+..+.+..|+.+.|.|.+.+.+.+. ..+.|++++..+.. ... .++...... .....+|.|.
T Consensus 5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~ 84 (218)
T 4frw_A 5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR 84 (218)
T ss_dssp CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence 45667888999999999999876653 25899986532111 111 111111111 1234579999
Q ss_pred ecccCCCeEEEEEeecC
Q psy3475 140 KAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 140 ~~~~~d~g~Y~C~~~n~ 156 (207)
+++.+|+|.|.|.+.+.
T Consensus 85 ~v~~~D~G~Y~C~~~~~ 101 (218)
T 4frw_A 85 NAVQADEGEYECRVSTF 101 (218)
T ss_dssp SCCGGGCEEEEEEEEEE
T ss_pred eccHHHCCceeEEEEec
Confidence 99999999999999876
No 482
>3nn8_A Engineered SCFV, heavy chain; beta barrel, antibody fragment, immunoglobulin, immune syste; 3.10A {Mus musculus}
Probab=98.85 E-value=7.8e-09 Score=66.65 Aligned_cols=57 Identities=23% Similarity=0.198 Sum_probs=44.7
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
|.||||.++..+......+. ..+||.+..+...+.++|+|.+++.+|+|.|.|.+..
T Consensus 36 ~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 101 (122)
T 3nn8_A 36 VNWVKQSPGKGLEWLAHIYWDDDKRYNPSLKSRATLTVDKTSSTVYLELRSLTSEDSSVYYCARRG 101 (122)
T ss_dssp EEEEEEETTEEEEEEEEEETTCCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred eEEEEeCCCCCcEEEEEEEcCCCeecCccccCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence 38999988766555443332 1478998877667789999999999999999999864
No 483
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}
Probab=98.84 E-value=1.6e-08 Score=68.56 Aligned_cols=58 Identities=16% Similarity=0.354 Sum_probs=43.6
Q ss_pred CeeEEccCCc---cceeeEEEEe------------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecCC
Q psy3475 1 VSWIRKRDLH---ILTVGILTYT------------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59 (207)
Q Consensus 1 v~W~r~~~~~---~~~~~~~~~~------------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 59 (207)
|+||||.++. .+...++... ..+||++..+. .+.++|+|.+++.+|+|.|.|.+....
T Consensus 41 v~WyrQ~pg~~~~~p~~Li~~~~~~~~~~y~~~~~~~~Rfs~s~~~-~~~~sL~I~~vq~eDsG~YyCa~~~~~ 113 (166)
T 3dmm_C 41 CSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDT-NNKYVLTLNKFSKENEGYYFCSVISNS 113 (166)
T ss_dssp EEEEEEETTCSCCSCEEEEEEESSSCCEEECGGGSSCCSEEEECST-TTEEEEEESSCCTTTCEEEEEEEESSS
T ss_pred EEEEEECCCCCCCCcEEEEEEeCCCCceeeccccccccceEEEcCC-CCEEEEEECCCChhhCEEEEEEECCCC
Confidence 5899998876 5555554432 25688877655 455999999999999999999987543
No 484
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=98.84 E-value=1.6e-07 Score=67.03 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=53.4
Q ss_pred CcceEEecCCcEEEEEEEeeCCCCC--cEEEEEeC--CEE---EEe-----------cCCCceEEEEecccceEEEEEEe
Q psy3475 79 NSELYIKSGSDINLTCVVLETPDPP--SFIYWYRG--ANV---VNY-----------SQRGGISVVTEKQTRTSRLVISK 140 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~~~~~~--~~~~W~~~--~~~---~~~-----------~~~~~~~~~~~~~~~~~~l~i~~ 140 (207)
+....+..|+.++|.|.+.+.+... ..+.|++. +.. +.. ....++....+.......|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS 86 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence 4456778999999999999865311 28999873 221 111 11234444433222457899999
Q ss_pred cccCCCeEEEEEeecCC
Q psy3475 141 AVTSDSGNYTCAPSSSD 157 (207)
Q Consensus 141 ~~~~d~g~Y~C~~~n~~ 157 (207)
++.+|+|.|.|.+.+..
T Consensus 87 v~~~D~G~Y~C~~~~~~ 103 (228)
T 3bae_H 87 VDTADTATYYCARRGFY 103 (228)
T ss_dssp CCGGGCEEEEEEEEEES
T ss_pred CCcccCEEEEEEEecCC
Confidence 99999999999998853
No 485
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=98.84 E-value=5.3e-09 Score=73.18 Aligned_cols=86 Identities=19% Similarity=0.308 Sum_probs=59.5
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEE----------ecCCCceEEEEecccceEEEEEEecccCCC
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVN----------YSQRGGISVVTEKQTRTSRLVISKAVTSDS 146 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 146 (207)
..+....+..|+.+.|.|.+.+.|.+ .+.|++++..+. .....++.. ....|.|.+++.+|+
T Consensus 9 ~~~~~~~v~~G~~v~L~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~------~~~~L~i~~~~~~d~ 80 (209)
T 1nbq_A 9 SSEPEVRIPENNPVKLSCAYSGFSSP--RVEWKFDQGDTTRLVCYNNKITASYEDRVTF------LPTGITFKSVTREDT 80 (209)
T ss_dssp CSCSBCCEETTCCCEEECEEESCSSE--EEEEEEEETTEEEESEETTEECTTTTTTCEE------ETTEEECSCCCTTSC
T ss_pred cCCCceEEEcCCCEEEEEEEeCCCCc--EEEEEEcCCceeEEEEecCccCccccCceEe------eccEEEEeeCCHHHC
Confidence 44566778899999999999987666 899998654421 111112221 126799999999999
Q ss_pred eEEEEEeecCC-----CCeEEEEEecCCc
Q psy3475 147 GNYTCAPSSSD-----GASVVVHVLNGKK 170 (207)
Q Consensus 147 g~Y~C~~~n~~-----~~~~~~~v~~~~~ 170 (207)
|.|+|.+.|.. ...+.+.+...+.
T Consensus 81 G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~ 109 (209)
T 1nbq_A 81 GTYTCMVSEEGGNSYGEVKVKLIVLVPPS 109 (209)
T ss_dssp SEEEEEEEETTSSCEECCEEECCEEBCCC
T ss_pred cEEEEEEecCCCCccceEEEEEEEecCCc
Confidence 99999999862 3345566655443
No 486
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=98.84 E-value=1.1e-07 Score=69.02 Aligned_cols=84 Identities=12% Similarity=0.298 Sum_probs=57.2
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CE---EEEe-c-----------CCCceEEEEecccceEE
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--AN---VVNY-S-----------QRGGISVVTEKQTRTSR 135 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~---~~~~-~-----------~~~~~~~~~~~~~~~~~ 135 (207)
+.+...+..+.+.+|+.++|.|.+.+...+...+.|++. +. .+.. . ...++....+.......
T Consensus 7 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 86 (256)
T 3juy_B 7 QVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAY 86 (256)
T ss_dssp CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEE
T ss_pred eEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEE
Confidence 344455777888999999999999884222237999962 21 1111 1 12345544333345568
Q ss_pred EEEEecccCCCeEEEEEeecC
Q psy3475 136 LVISKAVTSDSGNYTCAPSSS 156 (207)
Q Consensus 136 l~i~~~~~~d~g~Y~C~~~n~ 156 (207)
|.|.+++.+|+|.|.|.+.|.
T Consensus 87 L~I~~v~~~DsG~Y~C~~~~~ 107 (256)
T 3juy_B 87 MELRSLRSADTAVYYCARVGE 107 (256)
T ss_dssp EEECSCCGGGCEEEEEEECCC
T ss_pred EEECCCCcccCEEEEEeEEec
Confidence 999999999999999999885
No 487
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=98.83 E-value=1.2e-07 Score=67.74 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=59.2
Q ss_pred ecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCC--E---EEEec-------CCCceEEEEecccceEEEEEEecccC
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA--N---VVNYS-------QRGGISVVTEKQTRTSRLVISKAVTS 144 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~--~---~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~ 144 (207)
..+....+..|+.+.|.|.+.+.+.+ .+.|++.. . .+... ...++.... ......|.|.+++.+
T Consensus 29 ~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 104 (237)
T 3sob_L 29 QSPSSLSASVGDRVTITCRASQDVST--AVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTISSLQPE 104 (237)
T ss_dssp EECSEEEEETTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred eCCCeEEEeCCCcEEEEEecCCCCCc--eEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEc--CCCEEEEEECCCChh
Confidence 33566778899999999999987655 89998832 1 11111 112333322 224678999999999
Q ss_pred CCeEEEEEeecCC----CCeEEEEEec
Q psy3475 145 DSGNYTCAPSSSD----GASVVVHVLN 167 (207)
Q Consensus 145 d~g~Y~C~~~n~~----~~~~~~~v~~ 167 (207)
|+|.|+|.+.+.. +....+.|..
T Consensus 105 D~G~Y~C~~~~~~~~~~~~~~~l~V~~ 131 (237)
T 3sob_L 105 DFATYYCQQSYTTPPTFGQGTKVEIKR 131 (237)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEEC
T ss_pred hCeEEEEeeccCCceEEcCcEEEEEec
Confidence 9999999998863 3445666654
No 488
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Probab=98.83 E-value=8.2e-09 Score=65.45 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=42.2
Q ss_pred CeeEEccCCccceeeEEEEe-----CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEe
Q psy3475 1 VSWIRKRDLHILTVGILTYT-----NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 56 (207)
|.|||+.++..+....+... ..+||.+..+...+.++|.|.+++.+|+|.|.|.+.
T Consensus 32 v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~ 92 (112)
T 2z35_A 32 LFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCALS 92 (112)
T ss_dssp EEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTCSEEEEEEE
T ss_pred EEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChhhCEEEEEEEE
Confidence 58999987655544333221 147888765666678899999999999999999987
No 489
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=98.83 E-value=2.4e-08 Score=70.03 Aligned_cols=92 Identities=17% Similarity=0.349 Sum_probs=59.4
Q ss_pred cceEEecCCcEEEEEEEeeCCCC--CcEEEEEe----------------CCEEEEe---cCCCceEEEEe-cccceEEEE
Q psy3475 80 SELYIKSGSDINLTCVVLETPDP--PSFIYWYR----------------GANVVNY---SQRGGISVVTE-KQTRTSRLV 137 (207)
Q Consensus 80 ~~~~~~~g~~~~l~C~~~~~~~~--~~~~~W~~----------------~~~~~~~---~~~~~~~~~~~-~~~~~~~l~ 137 (207)
..+.+..|+.+.|.|.+.+.+.. ...+.|++ ++..+.. ....++....+ .......|.
T Consensus 8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~ 87 (214)
T 3jz7_A 8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN 87 (214)
T ss_dssp EEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred ceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence 45667899999999999887632 23899987 2332221 11222222210 122456799
Q ss_pred EEecccCCCeEEEEEeecC---CCCeEEEEEecCCcc
Q psy3475 138 ISKAVTSDSGNYTCAPSSS---DGASVVVHVLNGKKF 171 (207)
Q Consensus 138 i~~~~~~d~g~Y~C~~~n~---~~~~~~~~v~~~~~~ 171 (207)
|.+++.+|+|.|+|.+.|. ......+.|...+..
T Consensus 88 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~ 124 (214)
T 3jz7_A 88 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG 124 (214)
T ss_dssp ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBS
T ss_pred EccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCC
Confidence 9999999999999999987 334456666654443
No 490
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=98.83 E-value=1.5e-07 Score=78.38 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=62.8
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEE-EE--eCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEEee
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIY-WY--RGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPS 154 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 154 (207)
.+....+..|+.+.|.|.+.+.|.| .+. |+ ++|..+..... . ..........|.|.++...|.|.|+|.|.
T Consensus 170 ~~~~~~v~~G~~v~l~C~~~g~P~p--~i~~W~~~~~g~~l~~~~~---~-~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~ 243 (731)
T 2v5y_A 170 RIQNVEVNAGQFATFQCSAIGRTVA--GDRLWLQGIDVRDAPLKEI---K-VTSSRRFIASFNVVNTTKRDAGKYRCMIR 243 (731)
T ss_dssp CCCCEEEETTSCEEEEEEEESCCCT--TCEEEEEESSSCCEEEEEE---E-ECCSSEEEEEEEECSCCTTTCEEEEEEEE
T ss_pred cccceEEeCCCcEEEEEEeCCCCCC--ceeEEEecCCCccccccce---E-EeccccceEEEEEcccccccCeEEEEEEE
Confidence 4567888899999999999999888 444 77 67776654321 0 00001234689999999999999999999
Q ss_pred cCCC----CeEEEEEecCCcc
Q psy3475 155 SSDG----ASVVVHVLNGKKF 171 (207)
Q Consensus 155 n~~~----~~~~~~v~~~~~~ 171 (207)
|..+ ....+.+...+.+
T Consensus 244 n~~G~~~s~~~~l~V~~~P~~ 264 (731)
T 2v5y_A 244 TEGGVGISNYAELVVKEPPVP 264 (731)
T ss_dssp ETTEEEECCCEEEEEECCCCB
T ss_pred CCCCCcceeeEEEEEecCCCC
Confidence 9833 3456777665544
No 491
>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*
Probab=98.83 E-value=5e-09 Score=68.08 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=44.1
Q ss_pred CeeEEccCCccceeeEEEEe---------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDLHILTVGILTYT---------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
|.||||.++..+....+... ..+||.+..+...+.++|+|.+++.+|+|.|.|.+.+
T Consensus 35 v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 100 (127)
T 3cx5_J 35 WNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTEDTATYYCARSE 100 (127)
T ss_dssp EEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEECCCCCcEEEEEEeCCCCeeECcccCCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEe
Confidence 57999988766655444331 1478887776666789999999999999999999865
No 492
>3g9a_B Minimizer; antibody complex, chromophore, luminescence, photoprotein, fluorescent protein/immune system complex, nanobody; HET: GYS; 1.61A {Lama pacos} SCOP: b.1.1.1
Probab=98.83 E-value=5.5e-09 Score=68.76 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=44.9
Q ss_pred CeeEEccCCccceeeEEEEeC---------CCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEecC
Q psy3475 1 VSWIRKRDLHILTVGILTYTN---------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58 (207)
Q Consensus 1 v~W~r~~~~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 58 (207)
+.||||.++..++.....+.. .+||++..+...+.++|+|.+++.+|+|.|.|.+...
T Consensus 36 v~WyrQ~~g~~p~~L~~~~~~~~~~~~~~~~~Rfs~s~~~~~~~~sLtI~~lq~~DSG~YyCav~~~ 102 (139)
T 3g9a_B 36 MAWFRQAPGKECELVSNILRDGTTTYAGSVKGRFTISRDDAKNTVYLQMVNLKSEDTARYYCAADSG 102 (139)
T ss_dssp EEEEEECTTSCEEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEC-CEESS
T ss_pred EEEEEECCCCCcEEEEEEECCCCEEcCCccCCCEEEEECCCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence 579999987766655443221 4799988877778899999999999999999998754
No 493
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*
Probab=98.83 E-value=1.2e-08 Score=64.96 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=41.2
Q ss_pred CeeEEccCC---ccceeeEEEEe----------CCCeEEEeecCCCCcEEEEEcccCCCCCeEEEEEEec
Q psy3475 1 VSWIRKRDL---HILTVGILTYT----------NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57 (207)
Q Consensus 1 v~W~r~~~~---~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 57 (207)
|.|||+.++ ..+....+... .++||.+..+...+.++|+|.+++.+|+|.|.|.+..
T Consensus 31 v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 100 (115)
T 2atp_B 31 IYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPEDSDFYFCATVG 100 (115)
T ss_dssp EEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEeEcc
Confidence 589998764 22233222221 1478998776566778999999999999999999875
No 494
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=98.83 E-value=1.2e-08 Score=73.55 Aligned_cols=85 Identities=26% Similarity=0.429 Sum_probs=56.5
Q ss_pred CcceEEecCCcEEEEEEEee---CCCCCcEEEEEeCCEEE----Eec------------------------CCCceEEEE
Q psy3475 79 NSELYIKSGSDINLTCVVLE---TPDPPSFIYWYRGANVV----NYS------------------------QRGGISVVT 127 (207)
Q Consensus 79 ~~~~~~~~g~~~~l~C~~~~---~~~~~~~~~W~~~~~~~----~~~------------------------~~~~~~~~~ 127 (207)
+..+.+..|+.+.|.|.+.+ .+.+ .+.|++++... ... ...++...
T Consensus 9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~- 85 (250)
T 2fbo_J 9 HTEVEVHAGGTVELPCSYQLANDTQPP--VISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVA- 85 (250)
T ss_dssp CSEEEECTTSCEEECCEEEECSCCSCC--EEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECS-
T ss_pred CCceEEecCCeEEEEEEeEcCCCCCce--EEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEec-
Confidence 34667889999999999987 5555 89999875321 111 01111111
Q ss_pred ecccceEEEEEEecccCCCeEEEEEeecCCCC--------eEEEEEecC
Q psy3475 128 EKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA--------SVVVHVLNG 168 (207)
Q Consensus 128 ~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~~--------~~~~~v~~~ 168 (207)
......|.|.+++.+|+|.|+|.+.|..+. .+.|.|...
T Consensus 86 --~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~ 132 (250)
T 2fbo_J 86 --NLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH 132 (250)
T ss_dssp --CTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTT
T ss_pred --cCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEecc
Confidence 011347999999999999999999997332 455666543
No 495
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=98.83 E-value=1.6e-07 Score=68.17 Aligned_cols=91 Identities=22% Similarity=0.349 Sum_probs=59.4
Q ss_pred cCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeC--CE--EEE--e----------cCCCceEEEEecccceEEEEEEec
Q psy3475 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG--AN--VVN--Y----------SQRGGISVVTEKQTRTSRLVISKA 141 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~--~~--~~~--~----------~~~~~~~~~~~~~~~~~~l~i~~~ 141 (207)
.+....+.+|+.++|.|.+.+.+.+...+.|++. +. .+. . ....++....+.......|.|.++
T Consensus 14 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 93 (257)
T 3gkz_A 14 ESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSV 93 (257)
T ss_dssp EECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred CCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCC
Confidence 3455668899999999999995433338999982 11 111 0 112344444333334568999999
Q ss_pred ccCCCeEEEEEeecC-------CCCeEEEEEecC
Q psy3475 142 VTSDSGNYTCAPSSS-------DGASVVVHVLNG 168 (207)
Q Consensus 142 ~~~d~g~Y~C~~~n~-------~~~~~~~~v~~~ 168 (207)
+.+|+|.|.|.+.|. .+....+.|...
T Consensus 94 ~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~ 127 (257)
T 3gkz_A 94 SSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGG 127 (257)
T ss_dssp CGGGCEEEEEEEECTTCTTCEEECCCEEEEEC--
T ss_pred ChhhCEEEEEEEecCCCcceeEEcCCEEEeecCc
Confidence 999999999999986 234455666543
No 496
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}
Probab=98.83 E-value=9.5e-09 Score=65.40 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=49.8
Q ss_pred cCcceEEecCCcEEEEEEEee-CCCCC--cEEEEEeCCEE--E-E--------ecCCCceEEEEecc-c--ceEEEEEEe
Q psy3475 78 GNSELYIKSGSDINLTCVVLE-TPDPP--SFIYWYRGANV--V-N--------YSQRGGISVVTEKQ-T--RTSRLVISK 140 (207)
Q Consensus 78 ~~~~~~~~~g~~~~l~C~~~~-~~~~~--~~~~W~~~~~~--~-~--------~~~~~~~~~~~~~~-~--~~~~l~i~~ 140 (207)
.+..+.+..|+.++|.|.+.. .+.+. ..+.|++++.. + . .....++....+.. . ....|.|.+
T Consensus 6 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~ 85 (118)
T 3udw_C 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG 85 (118)
T ss_dssp CCSEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECS
T ss_pred CCCeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEee
Confidence 344567889999999999954 33332 14899986421 1 1 01122222221110 1 156899999
Q ss_pred cccCCCeEEEEEeec
Q psy3475 141 AVTSDSGNYTCAPSS 155 (207)
Q Consensus 141 ~~~~d~g~Y~C~~~n 155 (207)
++.+|+|.|.|.+.+
T Consensus 86 v~~~D~G~Y~C~v~~ 100 (118)
T 3udw_C 86 LRVEDEGNYTCLFVT 100 (118)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred cChHHCeEEEEEEEE
Confidence 999999999999988
No 497
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=98.82 E-value=3.2e-08 Score=80.14 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=65.8
Q ss_pred cceEecCcceEEecCCcEEEEEEEeeCCCCCcEEEEEeCCEEEEecCCCceEEEEecccceEEEEEEecccCCCeEEEEE
Q psy3475 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152 (207)
Q Consensus 73 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~ 152 (207)
|.+...+....+..|+.+.+.|.+.+.|.| .+.|++++..+..+.+ +....+ .....|.|..+..+|+|.|+|+
T Consensus 483 P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P--~v~W~k~~~el~~s~~--~~i~~~--~~~~~L~I~~~~~~D~G~Yt~~ 556 (573)
T 3uto_A 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPP--VVTWHKDDRELKQSVK--YMKRYN--GNDYGLTINRVKGDDKGEYTVR 556 (573)
T ss_dssp CEEEECCCCEEECTTSCEEEEEEEECSSCC--EEEEEETTEECCSSSS--EEEEEE--TTEEEEEECSCCGGGCEEEEEE
T ss_pred CccccCCCCcEEeCCCcEEEEEEEEccCCC--eEEEEECCEEcccCCc--EEEEEc--CCEEEEEEcCCCcccCcEEEEE
Confidence 444555667788899999999999999999 9999999998876655 333332 3567899999999999999999
Q ss_pred eecCCCC
Q psy3475 153 PSSSDGA 159 (207)
Q Consensus 153 ~~n~~~~ 159 (207)
|.|..+.
T Consensus 557 A~N~~G~ 563 (573)
T 3uto_A 557 AKNSYGT 563 (573)
T ss_dssp EEETTEE
T ss_pred EEeCCCc
Confidence 9999544
No 498
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*
Probab=98.82 E-value=7.1e-09 Score=65.14 Aligned_cols=75 Identities=15% Similarity=0.266 Sum_probs=49.0
Q ss_pred eEEecCCcEEEEEEEeeCCCCC-cEEEEEeCCE-------EEEe-c-------CCCceEEEEecccceEEEEEEecccCC
Q psy3475 82 LYIKSGSDINLTCVVLETPDPP-SFIYWYRGAN-------VVNY-S-------QRGGISVVTEKQTRTSRLVISKAVTSD 145 (207)
Q Consensus 82 ~~~~~g~~~~l~C~~~~~~~~~-~~~~W~~~~~-------~~~~-~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d 145 (207)
+.+..|+.+.|.|.+...+.+. ..+.|++... .+.. . ...++....+.......|.|.+++.+|
T Consensus 4 v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D 83 (109)
T 2oyp_A 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDD 83 (109)
T ss_dssp EEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGGG
T ss_pred EEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCChh
Confidence 4567899999999987754331 2589998442 1111 1 112222221112234579999999999
Q ss_pred CeEEEEEeecC
Q psy3475 146 SGNYTCAPSSS 156 (207)
Q Consensus 146 ~g~Y~C~~~n~ 156 (207)
+|.|.|.+.+.
T Consensus 84 ~G~Y~C~v~~~ 94 (109)
T 2oyp_A 84 HGTYCCRIQFP 94 (109)
T ss_dssp CEEEEEEECCS
T ss_pred CeEEEEEEEcC
Confidence 99999999987
No 499
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=98.82 E-value=3.3e-08 Score=69.57 Aligned_cols=93 Identities=18% Similarity=0.365 Sum_probs=60.8
Q ss_pred ecCcceEEecCCcEEEEEEEeeCC-----CCCcEEEEEeCCEE------EEe---------cCCCceEEEEecccceEEE
Q psy3475 77 IGNSELYIKSGSDINLTCVVLETP-----DPPSFIYWYRGANV------VNY---------SQRGGISVVTEKQTRTSRL 136 (207)
Q Consensus 77 ~~~~~~~~~~g~~~~l~C~~~~~~-----~~~~~~~W~~~~~~------~~~---------~~~~~~~~~~~~~~~~~~l 136 (207)
..+..+.+..|+.+.|.|.+.... .+...+.|++++.. +.. ....++....+.......|
T Consensus 5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL 84 (214)
T 2zg1_A 5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL 84 (214)
T ss_dssp ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence 345667788999999999988531 12338999997642 111 1122333322212234579
Q ss_pred EEEecccCCCeEEEEEeecCC-------CCeEEEEEecCC
Q psy3475 137 VISKAVTSDSGNYTCAPSSSD-------GASVVVHVLNGK 169 (207)
Q Consensus 137 ~i~~~~~~d~g~Y~C~~~n~~-------~~~~~~~v~~~~ 169 (207)
.|.+++.+|+|.|.|.+.+.. ...+.|.|...+
T Consensus 85 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~ 124 (214)
T 2zg1_A 85 SIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI 124 (214)
T ss_dssp EECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC
T ss_pred EEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC
Confidence 999999999999999998873 245667776543
No 500
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=98.82 E-value=2.3e-08 Score=70.37 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=50.5
Q ss_pred EecCCcEEEEEEEeeCC--CCCcEEEEEeCCEEEEecCCCceEEEEec-ccceEEEEEEecccCCCeEEEEEeecCCC
Q psy3475 84 IKSGSDINLTCVVLETP--DPPSFIYWYRGANVVNYSQRGGISVVTEK-QTRTSRLVISKAVTSDSGNYTCAPSSSDG 158 (207)
Q Consensus 84 ~~~g~~~~l~C~~~~~~--~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~n~~~ 158 (207)
+..|+.+.|.|.+.+.+ ++...+.|++++..+.............+ ....+.|.|.+++.+|+|.|+|.+.|..+
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~ 92 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAF 92 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTC
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCC
Confidence 67899999999999874 22338999998876542110000000000 11235799999999999999999999844
Done!