RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3475
(207 letters)
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 85.3 bits (211), Expect = 3e-20
Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 22/173 (12%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
+SW G N R + + +D TL I ++ + D+G Y+C V+ E
Sbjct: 35 ISWFSPN-------GEKLSPNQQRISVVWNDDDS-STLTIYNANIDDAGIYKCVVTAEDG 86
Query: 61 ISIGYKLNVVISKAKIIGN--SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYS 118
+NV I + + N + K G D + C V P I W V
Sbjct: 87 TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV--VSSLPPTIIWKHKGRDVILK 144
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC-----APSSSDGASVVVHVL 166
+ V++ + L I +D G Y C A + + V V
Sbjct: 145 KDVRFIVLS-----NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192
Score = 68.7 bits (168), Expect = 3e-14
Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 24/174 (13%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
+ W K + D+RF L ++ L+I + D GTY C+ +
Sbjct: 132 IIWKHKG-------RDVILKKDVRFIVLSNN-----YLQIRGIKKTDEGTYRCEGRILAR 179
Query: 61 ISIGYK-LNVVISKAKII----GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV 115
I +K + V+++ + G + L C P + W + +
Sbjct: 180 GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDA--DGFPEPTMSWTKDGEPI 237
Query: 116 NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
+ + +S L I +D Y C + G AS+ + V
Sbjct: 238 ENEEEDDEKHIF--SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
Score = 53.7 bits (129), Expect = 5e-09
Identities = 22/92 (23%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
S+ I G C V I W+ + ISVV +S L I
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKD-ISWFSPNGEKLSPNQQRISVVWNDD-DSSTLTIY 67
Query: 140 KAVTSDSGNYTCAPSSSDG------ASVVVHV 165
A D+G Y C ++ DG +V +
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ 99
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 79.1 bits (195), Expect = 2e-19
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
+ W L D R + + E ++ ++ L D G Y C + T P
Sbjct: 38 LQWSN-PAQQTLYFDDKKALRDNRIELVRAS-WHELSISVSDVSLSDEGQYTCSLFTMPV 95
Query: 61 ISIGYKLNVVI 71
+ L V+
Sbjct: 96 KTSKAYLTVLG 106
Score = 42.9 bits (101), Expect = 5e-06
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGIS-----VVTEKQTRTSRLVISKA 141
G LTC V + + + W A Y + + +S
Sbjct: 21 GGTAILTCRVDQNDNTS--LQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDV 78
Query: 142 VTSDSGNYTCAPSSSDGASVVVHV 165
SD G YTC+ + + ++
Sbjct: 79 SLSDEGQYTCSLFTMPVKTSKAYL 102
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 79.4 bits (195), Expect = 3e-19
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
+ W L G D R L + E ++ I++ L D G Y C + T P
Sbjct: 70 LQWSN-PAQQTLYFGEKRALRDNRI-QLVTSTPHELSISISNVALADEGEYTCSIFTMPV 127
Query: 61 ISIGYKLNVVI 71
+ + V+
Sbjct: 128 RTAKSLVTVLG 138
Score = 35.9 bits (82), Expect = 0.003
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 7/85 (8%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISV-----VTEKQTRTSRLVISKA 141
G + L C V + D + W A Y + + IS
Sbjct: 53 GGTVVLKCQVKDHEDS--SLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNV 110
Query: 142 VTSDSGNYTCAPSSSDGASVVVHVL 166
+D G YTC+ + + V
Sbjct: 111 ALADEGEYTCSIFTMPVRTAKSLVT 135
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 82.2 bits (202), Expect = 3e-19
Identities = 30/202 (14%), Positives = 70/202 (34%), Gaps = 37/202 (18%)
Query: 1 VSWIRKRDLHILTVGILTYTNDL---------RFTSLHSDGSDEWTLKIASSQLRDSGTY 51
V W+ +D + +L Y ++L R + ++ +L + Q D G Y
Sbjct: 40 VDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIY 99
Query: 52 ECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSF-IYWY 109
C++ + + + + + + + +L ++ G + C + T + + W
Sbjct: 100 TCEIRLKNESMVMKKPVELWVLPEE---PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWM 156
Query: 110 RGA-------NVVNYSQ-------------RGGISVVTEKQTRTSRLVISKAVTSDSGNY 149
+ V++Y R + + + + + SD G Y
Sbjct: 157 FSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIY 216
Query: 150 TCA---PSSSDGASVVVHVLNG 168
TC+ ++V+HV+
Sbjct: 217 TCSIYVGKLESRKTIVLHVVQD 238
Score = 39.9 bits (92), Expect = 2e-04
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 22/109 (20%)
Query: 80 SELYIKSGSDINLTCVVLET-PDPPSFIYWYR----------------GANVVNYSQRGG 122
+L + G + + CVV T + W +V +
Sbjct: 13 PQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNR 72
Query: 123 ISVVTEKQTRTSRLVISKAVTSDSGNYTC-----APSSSDGASVVVHVL 166
+V + L++ +D G YTC S V + VL
Sbjct: 73 SHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL 121
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 78.1 bits (192), Expect = 3e-18
Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 15/177 (8%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS---T 57
V W + T ++ Y N + + + S D+GTY C VS
Sbjct: 36 VEWKFDQGD---TTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGG 92
Query: 58 EPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNY 117
+ KL V++ +K N G+ LTC + PPS W++ V+
Sbjct: 93 NSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQD-GSPPSEYTWFKDGIVMPT 151
Query: 118 SQRGGISVVTEKQT---RTSRLVISKAVTSDSGNYTCAPSSSDG-----ASVVVHVL 166
+ + + T LV SD+G Y+C + G +V + +
Sbjct: 152 NPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208
Score = 47.6 bits (113), Expect = 4e-07
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 11/97 (11%)
Query: 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRT----S 134
E+ I + + L+C P + W + + R +
Sbjct: 11 EPEVRIPENNPVKLSCAYSGFSSP--RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT 68
Query: 135 RLVISKAVTSDSGNYTCAPSSSDG-----ASVVVHVL 166
+ D+G YTC S G V + VL
Sbjct: 69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 80.2 bits (198), Expect = 4e-18
Identities = 39/168 (23%), Positives = 62/168 (36%), Gaps = 12/168 (7%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP- 59
++W R D T G + + H S L I +L DSG Y+C+ ++
Sbjct: 32 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS----LHIKDVKLSDSGRYDCEAASRIG 87
Query: 60 KISIGYKLNVVISKAKIIGNSE-LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYS 118
L + K I N Y G+ IN++C V +PP+ I+W R V+
Sbjct: 88 GHQKSMYL-DIEYAPKFISNQTIYYSWEGNPINISCDV--KSNPPASIHWRRDKLVLPAK 144
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC-APSSSDGASVVVHV 165
+ + R L I+ +D G Y C A + +
Sbjct: 145 NTTNLKTYSTG--RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190
Score = 49.8 bits (119), Expect = 1e-07
Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 9/120 (7%)
Query: 75 KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGIS---VVTEKQT 131
II + L C P P I W R + +++ + + Q
Sbjct: 3 HIIQLKNETTYENGQVTLVCDAEGEPIP--EITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 132 RTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVLNGKKF-NKLSSLRGRVGITLKF 187
+S L I SDSG Y C +S G S+ + + KF + + G +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINI 120
Score = 33.6 bits (77), Expect = 0.037
Identities = 14/88 (15%), Positives = 22/88 (25%), Gaps = 28/88 (31%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKI 76
L N + + L+IA + D G Y C +
Sbjct: 141 LPAKNTTNLKTYSTGRKM--ILEIAPTSDNDFGRYNCTATNH------------------ 180
Query: 77 IGNSELYIKSGSDINLTCVVLETPDPPS 104
IG + L + + P P
Sbjct: 181 IGTRF------QEYILA--LADVPSSPY 200
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 77.4 bits (190), Expect = 5e-18
Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 9/173 (5%)
Query: 1 VSWIR----KRDLHILTVGILTYTNDLRFTSLHS--DGSDEWTLKIASSQLRDSGTYECQ 54
VSW + + + I + + F ++ + L + ++ + G Y C+
Sbjct: 26 VSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCR 85
Query: 55 VST-EPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN 113
+ E +++ L+VV + + S + +TC V P P + W
Sbjct: 86 MKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHP--HVQWLMPEG 143
Query: 114 VVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHVL 166
V V+ EK S V TC + + V+V
Sbjct: 144 VEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYVS 196
Score = 38.1 bits (88), Expect = 7e-04
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 15/94 (15%)
Query: 87 GSDINLTCVVLE-TPDPPSFIYWYRGA-------------NVVNYSQRGGISVVTEKQTR 132
G + LT + P + W++ +V+ +
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 133 TSRLVISKAVTSDSGNYTC-APSSSDGASVVVHV 165
T LV++ A S GNY C + H+
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL 99
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 76.5 bits (188), Expect = 1e-17
Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 14/175 (8%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS---T 57
V W + ++ Y + + + +S +D+G Y C VS
Sbjct: 33 VEWKFVQGSTT---ALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGG 89
Query: 58 EPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNY 117
+ + L V++ +K + + G+ LTC + PPS W++ +
Sbjct: 90 QNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHD-GSPPSEYSWFKDGISMLT 148
Query: 118 SQRGGISVVTEK----QTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
+ ++ L+ DSG Y C + G S H+
Sbjct: 149 ADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
Score = 45.0 bits (106), Expect = 4e-06
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 11/100 (11%)
Query: 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSR 135
S++ + I LTC P + W + R +
Sbjct: 5 YTAQSDVQVPENESIKLTCTYSGFSSP--RVEWKFVQGSTTALVCYNSQITAPYADRVTF 62
Query: 136 ----LVISKAVTSDSGNYTCAPSSSDG-----ASVVVHVL 166
+ S D+G YTC S G S+ + VL
Sbjct: 63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 75.8 bits (186), Expect = 2e-17
Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 32/175 (18%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDE------WTLKIASSQLRDSGTYECQ 54
W + IL T + +D + L I + ++ DS TY C+
Sbjct: 27 FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICE 86
Query: 55 VSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV 114
V + + + + S+ ++ G + LT P +
Sbjct: 87 VEDQKEEVQLLVFGLTAN-------SDTHLLQGQSLTLTLES--PPGSSPSVQC------ 131
Query: 115 VNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
+ + +T L +S+ DSG +TC + + + VL
Sbjct: 132 ----RSPRGKNIQGGKT----LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178
Score = 40.7 bits (95), Expect = 8e-05
Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 15/80 (18%)
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGI-------------SVVTEKQT 131
K G + LTC + +W + +G S +
Sbjct: 8 KKGDTVELTCTASQKKSIQ--FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 132 RTSRLVISKAVTSDSGNYTC 151
L+I DS Y C
Sbjct: 66 GNFPLIIKNLKIEDSDTYIC 85
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 75.8 bits (186), Expect = 9e-17
Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 12/139 (8%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISKAKI----IGNSELYIKSGSDI 90
I +++ DS TY C+ + S G L V + + S+L G
Sbjct: 145 GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAA 204
Query: 91 NLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150
+ C + RG + K+ R L ++ D+G Y+
Sbjct: 205 QIVCSATNAE-VGFNVILKRGDTKLEIPLNSDFQDNYYKKVRA--LSLNAVDFQDAGIYS 261
Query: 151 CAPSSSDG---ASVVVHVL 166
C S+ G A++ V+
Sbjct: 262 CVASNDVGTRTATMNFQVV 280
Score = 57.7 bits (139), Expect = 3e-10
Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 15/159 (9%)
Query: 15 GILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNV-VIS 72
G + + + S TL ++ +++GTY C +P S L V +
Sbjct: 30 GSVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPA 89
Query: 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR 132
+ + E+ + G + L C++ P + R + + + +
Sbjct: 90 HSWNLLAQEVTVVEGQEAVLPCLI-TDPALKDSVSLMREGGRQVLRKT--VYFFSPWRG- 145
Query: 133 TSRLVISKAVTSDSGNYTC------APSSSDGASVVVHV 165
+I KA DS Y C S+S G + V+
Sbjct: 146 ---FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNR 181
Score = 44.9 bits (106), Expect = 5e-06
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 18/93 (19%)
Query: 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSR 135
EL ++ G + L CV + W + ++ S
Sbjct: 8 EPSGPELVVEPGETVTLRCVS------NGSVEWDG---------PISPYWTLDPESPGST 52
Query: 136 LVISKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
L A ++G Y C ++ ++V
Sbjct: 53 LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 72.8 bits (178), Expect = 4e-16
Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 24/183 (13%)
Query: 1 VSWIRKR-DLHILTVGILTYTNDLRFTSLHSD------------GSDEWTLKIASSQLRD 47
+ W+ D I+ I+ Y+ D + + + D S + ++ + + QL D
Sbjct: 36 IEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSD 95
Query: 48 SGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFI 106
GTY+C+V P + + L V++ + + + G+D L C E P
Sbjct: 96 IGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEG-SLPLQF 154
Query: 107 YWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVV 163
W + ++ + + + + A + SG Y+C + G + +
Sbjct: 155 EWQKLSDSQTMPTPWLA------EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208
Query: 164 HVL 166
V+
Sbjct: 209 DVV 211
Score = 36.2 bits (83), Expect = 0.004
Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 25/105 (23%)
Query: 87 GSDINLTCVVLETPDP--PSFIYWYRGAN---------VVNYSQRGGISVVTEKQTRTSR 135
G L C +P+ P I W + ++ + + + + R
Sbjct: 15 GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74
Query: 136 -----------LVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
+ ++ SD G Y C + G ++ VL
Sbjct: 75 TSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL 119
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 75.0 bits (184), Expect = 4e-16
Identities = 34/138 (24%), Positives = 49/138 (35%), Gaps = 13/138 (9%)
Query: 37 TLKIASSQLR-DSGTYECQVSTEPKISIGYKLNV-VISKAKII--GNSELYIKSGSDINL 92
TL I + + D TY C + S L V V+ +II E + G + L
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL 639
Query: 93 TCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152
C V P I W ++ S V + S L I S +GN+TC
Sbjct: 640 HCSVPGGD-LPLNIDWTLDGQAISEDLGITTSRVGRR---GSVLTIEAVEASHAGNFTCH 695
Query: 153 PSSSDG-----ASVVVHV 165
+ G + V+V
Sbjct: 696 ARNLAGHQQFTTPLNVYV 713
Score = 72.3 bits (177), Expect = 4e-15
Identities = 37/167 (22%), Positives = 56/167 (33%), Gaps = 14/167 (8%)
Query: 29 HSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAK---IIGNSELYI 84
HS+ L+I S + D G Y+C V + +L + E +
Sbjct: 386 HSES----VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETM 441
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGIS-VVTEKQTRTSRLVISKAVT 143
+ G + L CV P P I W + + R + VT S L I+
Sbjct: 442 EPGPSVFLKCVAGGNPTP--EISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHA 499
Query: 144 SDSGNYTCAPSSSDG---ASVVVHVLNGKKFNKLSSLRGRVGITLKF 187
+D G Y C S G S ++V ++ G TL
Sbjct: 500 NDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIV 546
Score = 66.5 bits (162), Expect = 4e-13
Identities = 33/144 (22%), Positives = 49/144 (34%), Gaps = 16/144 (11%)
Query: 29 HSDGSDEWTLKIASSQLRDSGTYECQVS-TEPKISIGYKLNVVISKAKIIGNSELYIKSG 87
+G L I S D G Y+C KLNV I + I +G
Sbjct: 483 TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV-YGLPYIRQMEKKAIVAG 541
Query: 88 SDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA-VTSDS 146
+ +TC V P I W R + +++ + L+I SD
Sbjct: 542 ETLIVTCPV--AGYPIDSIVWERDNRALPINRKQKV-------FPNGTLIIENVERNSDQ 592
Query: 147 GNYTCAPSSSDG----ASVVVHVL 166
YTC + +G S+ V V+
Sbjct: 593 ATYTCVAKNQEGYSARGSLEVQVM 616
Score = 64.2 bits (156), Expect = 2e-12
Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 20/134 (14%)
Query: 37 TLKIASSQLRDSGTYECQVS-TEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCV 95
TL I + + DSG Y C V+ + S+ L V + I + G TC
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQ 366
Query: 96 VLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155
P + W + + +S+ L I D G Y C +
Sbjct: 367 YTGNPIK--TVSWMKDGKAIGHSES--------------VLRIESVKKEDKGMYQCFVRN 410
Query: 156 SDG---ASVVVHVL 166
AS + +
Sbjct: 411 DRESAEASAELKLG 424
Score = 61.5 bits (149), Expect = 2e-11
Identities = 36/181 (19%), Positives = 57/181 (31%), Gaps = 29/181 (16%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDS-GTYECQVS--- 56
VSW + D ++ L G L I D +Y+C+
Sbjct: 173 VSWHTDEE----ENYFPGAEYDGKYLVL-PSG----ELHIREVGPEDGYKSYQCRTKHRL 223
Query: 57 -TEPKISIGYKLNVVI--------SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIY 107
E ++S V+ + S + L C P P
Sbjct: 224 TGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVP--VFR 281
Query: 108 WYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVH 164
WY+ Q ++ ++ + T L+I AV DSG Y C ++S G V+
Sbjct: 282 WYKFIEGTTRKQAVVLNDRVKQVSGT--LIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 339
Query: 165 V 165
V
Sbjct: 340 V 340
Score = 60.3 bits (146), Expect = 6e-11
Identities = 21/146 (14%), Positives = 42/146 (28%), Gaps = 10/146 (6%)
Query: 27 SLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIK 85
+ G L I + + +G + C LNV + I+ ++
Sbjct: 668 TTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFA 727
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
GSD + C P + W + + + + L + ++
Sbjct: 728 QGSDAKVECKA--DGFPKPQVTWKKAVGDTP-GEYKDLKKSDNIRVEEGTLHVDNIQKTN 784
Query: 146 SGNYTCAPSSSDGAS------VVVHV 165
G Y C + G+ + V
Sbjct: 785 EGYYLCEAINGIGSGLSAVIMISVQA 810
Score = 52.6 bits (126), Expect = 2e-08
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 16/142 (11%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIAS------SQLRDSGTYECQVSTEP--KISIGYKLNVVI 71
+ + SDG L Q + Y C + IS + V+
Sbjct: 82 GDVPGLRQISSDG----KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV 137
Query: 72 SKAKIIGNSELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQ 130
++ ++ ++ G+ + C++ D + W+ +
Sbjct: 138 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL--V 195
Query: 131 TRTSRLVISKAVTSDS-GNYTC 151
+ L I + D +Y C
Sbjct: 196 LPSGELHIREVGPEDGYKSYQC 217
Score = 49.9 bits (119), Expect = 1e-07
Identities = 18/165 (10%), Positives = 45/165 (27%), Gaps = 22/165 (13%)
Query: 38 LKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGN---SELYIKSGSDINLT 93
+ + + +L+ + ++ K + + + + + +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 94 CVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD------SG 147
C P P I W R G + ++ +LV D +
Sbjct: 61 CKASGNPMP--EIIWIRSDGTAVGDVPGLRQISSD-----GKLVFPPFRAEDYRQEVHAQ 113
Query: 148 NYTCAPSSSDGA----SVVVHVLNGKKFNK-LSSLRGRVGITLKF 187
Y C + G+ V V + + + ++ G +
Sbjct: 114 VYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVI 158
Score = 32.6 bits (74), Expect = 0.075
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
V+W + L ++++R +G TL + + Q + G Y C+
Sbjct: 746 VTWKKAVGDTPGEYKDLKKSDNIR----VEEG----TLHVDNIQKTNEGYYLCEAING 795
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 71.8 bits (176), Expect = 6e-16
Identities = 39/172 (22%), Positives = 64/172 (37%), Gaps = 22/172 (12%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
+SW G N R + + +D TL I ++ + D+G Y+C V+ E
Sbjct: 35 ISWFSPN-------GEKLSPNQQRISVVWNDDDS-STLTIYNANIDDAGIYKCVVTAEDG 86
Query: 61 ISIGYKLNVVISKAKIIGN--SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYS 118
+NV I + + N + K G D + C V+ + PP+ I W V
Sbjct: 87 TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSL-PPT-IIWKHKGRDVILK 144
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC-----APSSSDGASVVVHV 165
+ V++ + L I +D G Y C A + + V V
Sbjct: 145 KDVRFIVLSN-----NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
Score = 54.8 bits (132), Expect = 9e-10
Identities = 27/113 (23%), Positives = 38/113 (33%), Gaps = 7/113 (6%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
S+ I G C V I W+ + ISVV +S L I
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKD-ISWFSPNGEKLSPNQQRISVVWN-DDDSSTLTIY 67
Query: 140 KAVTSDSGNYTCAPSSSDG----ASVVVHVLNGKKF-NKLSSLRGRVGITLKF 187
A D+G Y C ++ DG A+V V + F N + + G
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 69.6 bits (170), Expect = 9e-16
Identities = 11/80 (13%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
+ W+ I + + ++ LH +++ ++ + + L+D G Y+C ++
Sbjct: 33 LQWLTPSGFTIF-LNEYPVLKNSKYQLLHHS-ANQLSITVPNVTLQDEGVYKCLHYSDSV 90
Query: 61 ISIGYKLNVVISKAKIIGNS 80
+ K+ V+ +
Sbjct: 91 STKEVKVIVLATMKGEFCRY 110
Score = 42.7 bits (100), Expect = 8e-06
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 7/84 (8%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISV-----VTEKQTRTSRLVISKA 141
G + L CV + S + W + + + + + +
Sbjct: 16 GQTLTLKCVT--SLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNV 73
Query: 142 VTSDSGNYTCAPSSSDGASVVVHV 165
D G Y C S ++ V V
Sbjct: 74 TLQDEGVYKCLHYSDSVSTKEVKV 97
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 71.1 bits (174), Expect = 1e-15
Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 20/172 (11%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS--TE 58
V W RD IL + T T D L+I S QL D+G Y+C V +
Sbjct: 35 VHW--LRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ 92
Query: 59 PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYS 118
+S + + + + + + + NL+C P+P + W + A + +
Sbjct: 93 TFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVD-LLWLQDAVPLATA 151
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG----ASVVVHVL 166
L + + + +++C ++ G + + VL
Sbjct: 152 PG---------HGPQRSLHVPGL--NKTSSFSCEAHNAKGVTTSRTATITVL 192
Score = 51.4 bits (123), Expect = 2e-08
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR-----TSRLVISKA 141
G L C + +PP ++W R ++ + V + + S+L I+
Sbjct: 17 GLTGTLRCQLQVQGEPPE-VHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSL 75
Query: 142 VTSDSGNYTCAPSSSDG------ASVVVHVL 166
SD+G Y C V + L
Sbjct: 76 QLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL 106
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 70.6 bits (173), Expect = 2e-15
Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 10/140 (7%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIKSGSDIN 91
L + + D G Y C+ + + + L V + + II +
Sbjct: 55 GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV-QPHIIQLKNETTYENGQVT 113
Query: 92 LTCVVLETPDPPSFIYWYRGANVVNYSQRGGIS---VVTEKQTRTSRLVISKAVTSDSGN 148
L C P P I W R + +++ + + Q +S L I SDSG
Sbjct: 114 LVCDAEGEP-IPE-ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 171
Query: 149 YTCAPSSSDG---ASVVVHV 165
Y C +S G S+ + +
Sbjct: 172 YDCEAASRIGGHQKSMYLDI 191
Score = 46.7 bits (111), Expect = 7e-07
Identities = 16/111 (14%), Positives = 39/111 (35%), Gaps = 11/111 (9%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ G ++ +C +P+P I W+R ++ +++ + + + L +
Sbjct: 12 FNATAERGEEMTFSCRASGSPEP--AISWFRNGKLIEENEKYIL------KGSNTELTVR 63
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHVLNGKKFNKLSSLRGRVGITLKF 187
+ SD G Y C ++ G + V +L + +
Sbjct: 64 NIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTL 114
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 73.2 bits (179), Expect = 2e-15
Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 13/140 (9%)
Query: 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKII----GNSELYIKSGSDIN 91
TL I+S+++ DSG + C + ++ L VV K I N+ +++ G +++
Sbjct: 274 TLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV-DKGFINIFPMINTTVFVNDGENVD 332
Query: 92 LTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150
L P P W + + S S L +++ ++ G YT
Sbjct: 333 LIVEYEAFP-KPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYT 391
Query: 151 CAPSSSDG-----ASVVVHV 165
S+SD +V V+
Sbjct: 392 FLVSNSDVNAAIAFNVYVNT 411
Score = 64.3 bits (156), Expect = 2e-12
Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 12/145 (8%)
Query: 33 SDEWTLKIASSQL-RDSGTYECQVST--EPKISIGYKLNVVISKAK----IIGNSELYIK 85
+ + I S + C V + +S + L V + + + ++
Sbjct: 165 DPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLR 224
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV-TEKQTRTSRLVISKAVTS 144
G + +TC + + W R + ++ R + L IS A +
Sbjct: 225 EGEEFTVTCTIKDVSSSVYST-WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN 283
Query: 145 DSGNYTCAPSSSDG---ASVVVHVL 166
DSG + C +++ G + + V+
Sbjct: 284 DSGVFMCYANNTFGSANVTTTLEVV 308
Score = 55.8 bits (134), Expect = 2e-09
Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 33/130 (25%)
Query: 46 RDSGTYECQV---------STEPKISIGYKLNVVISKAKI-IGNSELYIKSGSDINLTCV 95
R + + C + S++P +S G S I G S+L ++ G +I L C
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPG-----EPSPPSIHPGKSDLIVRVGDEIRLLCT 59
Query: 96 VLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155
P F+ W + + KA +++G YTC
Sbjct: 60 D------PGFVKWTFEILDETNENKQN------------EWITEKAEATNTGKYTCTNKH 101
Query: 156 SDGASVVVHV 165
S+ V V
Sbjct: 102 GLSNSIYVFV 111
Score = 55.8 bits (134), Expect = 2e-09
Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 20/141 (14%)
Query: 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCV 95
L + + + GTY VS +I + + V +K +I+ + L CV
Sbjct: 376 ELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV-NTKPEIL-----TYDRLVNGMLQCV 429
Query: 96 VLETPDPPSFIYWYR--------GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSG 147
P+P I WY A+V+ + S + I + +G
Sbjct: 430 AAGFPEPT--IDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNG 487
Query: 148 NYTCAPSSSDG---ASVVVHV 165
C + G A
Sbjct: 488 TVECKAYNDVGKTSAYFNFAF 508
Score = 50.8 bits (121), Expect = 8e-08
Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 15/139 (10%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
++ ++G Y C SI + V + + LY K +D + C +
Sbjct: 81 EWITEKAEATNTGKYTCTNKHGLSNSI--YVFVRDPAKLFLVDRSLYGKEDNDTLVRCPL 138
Query: 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS-DSGNYTCAPSS 155
DP Y +G + + ++I + C+
Sbjct: 139 ---TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAG-----IMIKSVKRAYHRLCLHCSVDQ 190
Query: 156 SDG----ASVVVHVLNGKK 170
++ V K
Sbjct: 191 EGKSVLSEKFILKVRPAFK 209
Score = 33.5 bits (76), Expect = 0.042
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFT-SLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
+ W + + S G I SS + +GT EC+
Sbjct: 438 IDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAY 494
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 72.9 bits (179), Expect = 2e-15
Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 24/172 (13%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS-TEP 59
++W K + + + + T + + TL + D+G Y C S
Sbjct: 229 ITW-AKDN------REIRPGGNYKMTLVENTA----TLTVLKVTKGDAGQYTCYASNVAG 277
Query: 60 KISIGYKLNVVISKAKIIG--NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNY 117
K S +L V + I +K C + P + WY+ +
Sbjct: 278 KDSCSAQLG-VQEPPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEIQE 334
Query: 118 SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
S + +S V L + DSG+YTC ++ G +S + V
Sbjct: 335 SSKFRMSFVESVAV----LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 382
Score = 71.0 bits (174), Expect = 1e-14
Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 15/176 (8%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAK 75
+ ++ R + + S L++ + + DSG Y C+ S L V
Sbjct: 332 IQESSKFRMSFVESVA----VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF 387
Query: 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSR 135
+ G+D++L C + TP + W++ + ++ + +
Sbjct: 388 RKKPHPVETLKGADVHLECELQGTPPF--QVSWHKDKRELRSGKK----YKIMSENFLTS 441
Query: 136 LVISKAVTSDSGNYTCAPSSSDG---ASVVVHVLNGKKF-NKLSSLRGRVGITLKF 187
+ I ++D G Y C S+ G + + +F KLS + VG ++
Sbjct: 442 IHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQL 497
Score = 69.4 bits (170), Expect = 4e-14
Identities = 36/174 (20%), Positives = 60/174 (34%), Gaps = 26/174 (14%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS-TEP 59
VSW + +L +L+ + +H+ TL+I + G Y C S
Sbjct: 133 VSWYKDG-------ELLKDDANLQTSFIHNVA----TLQILQTDQSHVGQYNCSASNPLG 181
Query: 60 KISIGYKLNVVISKAK---IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVN 116
S KL + + + + + G C V T P I W + +
Sbjct: 182 TASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTA-PIK-ITWAKDNREIR 239
Query: 117 YSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG-----ASVVVHV 165
+++V T+ L + K D+G YTC S+ G A + V
Sbjct: 240 PGGNYKMTLVEN----TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 289
Score = 69.1 bits (169), Expect = 5e-14
Identities = 31/172 (18%), Positives = 65/172 (37%), Gaps = 24/172 (13%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP- 59
VSW +D L + ++ + S+ ++ I + D G Y+C+ S +
Sbjct: 416 VSW--HKDKRELR-------SGKKYK-IMSEN-FLTSIHILNVDSADIGEYQCKASNDVG 464
Query: 60 KISIGYKLNVVISKAKIIGN-SELYIKSGSDINLTCVVLETPDPPSFIYWYR-GANVVNY 117
+ + + + + + S++ G ++ L + P + W++ +V
Sbjct: 465 SDTCVGSITLK-APPRFVKKLSDISTVVGEEVQLQATI--EGAEPISVAWFKDKGEIVRE 521
Query: 118 SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
S IS + L S+A +++G YTC + G + VL
Sbjct: 522 SDNIWIS----YSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 62.9 bits (153), Expect = 6e-12
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 13/136 (9%)
Query: 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAK---IIGNSELYIKSGSDINL 92
+L I D G Y C+ ++ L + K +++ G +
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAF 121
Query: 93 TCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152
C + P + WY+ ++ S + + L I + S G Y C+
Sbjct: 122 ECRI--NGSEPLQVSWYKDGELLKDDANLQTSFIHN----VATLQILQTDQSHVGQYNCS 175
Query: 153 PSSSDG---ASVVVHV 165
S+ G +S + +
Sbjct: 176 ASNPLGTASSSAKLTL 191
Score = 47.1 bits (112), Expect = 1e-06
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
G I L C V TP+ I WY+ + + + + + LVI+K
Sbjct: 17 AAIGEPITLQCKVDGTPEI--RIAWYKEHTKLRSAPAYKMQF----KNNVASLVINKVDH 70
Query: 144 SDSGNYTCAPSSSDG-----ASVVVHVLNGKKF--NKLSSLRGRVGITLKF 187
SD G YTC +S G A +V+ KL + +G + F
Sbjct: 71 SDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAF 121
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 72.1 bits (176), Expect = 3e-15
Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 20/183 (10%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFT-------SLHSDGSDEWTLKIASSQLRDSGTYEC 53
V+W + + V I + + + T++++ +L D G Y C
Sbjct: 50 VTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYIC 109
Query: 54 QVSTEP--KISIGYKLNVVISKAKIIGNSELYI-----KSGSDINLTCVVLETPDPPSFI 106
+ +T P L V+ I ++ + + + TC PPS +
Sbjct: 110 EFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANG-KPPSVV 168
Query: 107 YWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA---PSSSDGASVVV 163
W Q I T SR + + + + C S+ +
Sbjct: 169 SWETRLKGEAEYQ--EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTL 226
Query: 164 HVL 166
+V
Sbjct: 227 NVQ 229
Score = 61.7 bits (149), Expect = 1e-11
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 17/136 (12%)
Query: 37 TLKIASSQLRDSGTYECQVS-TEPKISIGYKLNVVIS-KAKIIGNSELYIKSGSDINLTC 94
++ S+ + C V+ + LNV + I G + D+ LTC
Sbjct: 195 RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTC 254
Query: 95 VVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT-SDSGNYTCAP 153
P P + +W S+ + + L + S +G Y C
Sbjct: 255 KADANP-PATEYHWTTL----------NGSLPKGVEAQNRTLFFKGPINYSLAGTYICEA 303
Query: 154 SSSDG---ASVVVHVL 166
++ G V V++
Sbjct: 304 TNPIGTRSGQVEVNIT 319
Score = 42.8 bits (100), Expect = 3e-05
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 20/100 (20%)
Query: 87 GSDINLTCVVLETPDPPSF--IYWYR-----GANVVNYSQRGGISVVTEKQTRTS----- 134
G+D+ L C + W + NV Y+ G+SV+ + R
Sbjct: 29 GTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPS 88
Query: 135 ----RLVISKAVTSDSGNYTC----APSSSDGASVVVHVL 166
+ +S+ D G Y C P+ + + + + V+
Sbjct: 89 FTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVM 128
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 71.5 bits (175), Expect = 3e-15
Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 12/139 (8%)
Query: 37 TLKIASSQLRDSGTYECQVS--TEPKISIGYKLNVVISKAK----IIGNSELYIKSGSDI 90
I ++ S Y+C +SI +L V + +EL G
Sbjct: 145 GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAA 204
Query: 91 NLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150
+ C ++ + Q+ ++ T L + + +GNY+
Sbjct: 205 QIVCSASSVD-VNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLT--LNLDQVDFQHAGNYS 261
Query: 151 CAPSSSDG---ASVVVHVL 166
C S+ G S+ V+
Sbjct: 262 CVASNVQGKHSTSMFFRVV 280
Score = 61.5 bits (149), Expect = 1e-11
Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 14/146 (9%)
Query: 27 SLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNV-VISKAKIIGNSELYI 84
+L+SDGS L ++ +++GTY C +P S L V ++ + E+ +
Sbjct: 43 TLYSDGSS-SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVV 101
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
D L C++ P + + R R + I +A
Sbjct: 102 FEDQDALLPCLL-TDPVLEAGVSLVRVRGRP--LMRHTNYSFSPWHG----FTIHRAKFI 154
Query: 145 DSGNYTCAPSSSDG----ASVVVHVL 166
S +Y C+ S+ + V
Sbjct: 155 QSQDYQCSALMGGRKVMSISIRLKVQ 180
Score = 43.4 bits (102), Expect = 2e-05
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 18/90 (20%)
Query: 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVI 138
EL +K G+ + L CV + W +S L
Sbjct: 11 VPELVVKPGATVTLRCVG------NGSVEWDG---------PPSPHWTLYSDGSSSILST 55
Query: 139 SKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
+ A ++G Y C A++ ++V
Sbjct: 56 NNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 69.8 bits (170), Expect = 5e-15
Identities = 31/145 (21%), Positives = 49/145 (33%), Gaps = 12/145 (8%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVST--EPKISIGYKLNVV---ISKAKIIGNSELYIKSG 87
+ I S + +G C+ E SI Y + VV I + + + + G
Sbjct: 61 DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG 120
Query: 88 SDINLTCVVLETPDPPSFIYWYRGANVVNY----SQRGGISVVTEKQTRTSRLVISKAVT 143
+ L C + W ++ + ++ +E + S L I
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180
Query: 144 SDSGNYTCAPSSSDG---ASVVVHV 165
SD G YTCA SS S V V
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVRV 205
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 71.4 bits (175), Expect = 6e-15
Identities = 38/178 (21%), Positives = 58/178 (32%), Gaps = 32/178 (17%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-- 58
+ W + + + D R L S L+I+ Q DSG Y C
Sbjct: 153 IHWQKNQQD------LNPIPGDSRVVVLPSG-----ALQISRLQPGDSGVYRCSARNPAS 201
Query: 59 PKISIGYKLNVVISKAK------IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA 112
+ ++ ++ + S + G D L C V + PP W RG
Sbjct: 202 TRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV--SGYPPPSFTWLRGE 259
Query: 113 NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG-----ASVVVHV 165
V+ R + L+IS DSG YTC + + A + V V
Sbjct: 260 EVI--QLRSKKYSLLGGSN----LLISNVTDDDSGTYTCVVTYKNENISASAELTVLV 311
Score = 62.5 bits (152), Expect = 6e-12
Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 15/134 (11%)
Query: 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSE-LYIKSGSDINLTC 94
L I++ DSGTY C V+ + IS +L V+ + + LY DI C
Sbjct: 276 NLLISNVTDDDSGTYTCVVTYKNENISASAELTVL-VPPWFLNHPSNLYAYESMDIEFEC 334
Query: 95 VVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPS 154
V + P + W + +VV S +V S L I V SD G Y C
Sbjct: 335 AV--SGKPVPTVNWMKNGDVVIPSDY--FQIVGG-----SNLRILGVVKSDEGFYQCVAE 385
Query: 155 SSDG---ASVVVHV 165
+ G +S + V
Sbjct: 386 NEAGNAQSSAQLIV 399
Score = 59.1 bits (143), Expect = 1e-10
Identities = 36/159 (22%), Positives = 53/159 (33%), Gaps = 17/159 (10%)
Query: 17 LTYTNDLRFTSLHSDGSDE-WTLKIASSQLRDSGTYECQVSTEP---KISIGYKLNVVIS 72
L D R L +GS + + D G Y+C+ S IS K+ V
Sbjct: 63 LALGMDDRKQQL-PNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP 121
Query: 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR 132
+ + G + L C V DP I+W + +N VV
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEV--IGDPMPTIHWQKNQQDLNPIPGDSRVVVLP---- 175
Query: 133 TSRLVISKAVTSDSGNYTCAPSSSDG------ASVVVHV 165
+ L IS+ DSG Y C+ + A V +
Sbjct: 176 SGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILS 214
Score = 50.6 bits (121), Expect = 7e-08
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
S+ G ++ L C P I W + ++ + ++ S
Sbjct: 29 SDAVTMRGGNVLLNCSAESDRGVPV-IKWKKDGLILALGMDDRKQQLPNGSLLIQNILHS 87
Query: 140 KAVTSDSGNYTCAPSSSDGASVVVH 164
+ D G Y C S D S++
Sbjct: 88 RHHKPDEGLYQCEASLGDSGSIISR 112
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 69.0 bits (169), Expect = 6e-15
Identities = 40/174 (22%), Positives = 61/174 (35%), Gaps = 29/174 (16%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
+SW R IL D R++ + +G L I S + D G Y C +
Sbjct: 39 ISWTRN--------KILIKLFDTRYS-IRENGQ---LLTILSVEDSDDGIYCCTANNGVG 86
Query: 61 ISIGYK-LNVVISKAKIIGN-SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYS 118
++ V K KI + I G L C + P P + W +G + + +
Sbjct: 87 GAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKP--SVSWIKGDSALREN 144
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG------ASVVVHVL 166
R I+V+ L I D+G Y C +S G + V V
Sbjct: 145 SR--IAVLES-----GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 70.5 bits (172), Expect = 7e-15
Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 16/180 (8%)
Query: 1 VSWIRKRDLHILTVGILTY------TNDLRFTSLHSDGSD-EWTLKIASSQLRDSGTYEC 53
++W R + + V T + L F + +L++ ++ D G Y C
Sbjct: 37 LTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTC 96
Query: 54 QVSTEP--KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111
T P S+ L V+ ++ + CV PP+ I W+
Sbjct: 97 LFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVS-TGGRPPAQITWHSD 155
Query: 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC-----APSSSDGASVVVHVL 166
+ + + ++ T TS ++ + D N TC + +V + V
Sbjct: 156 LGGMPNTSQ-VPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY 214
Score = 62.4 bits (151), Expect = 5e-12
Identities = 26/172 (15%), Positives = 49/172 (28%), Gaps = 26/172 (15%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS---T 57
++W DL + ++ S + S D C+V
Sbjct: 150 ITW--HSDLGGMPNTSQVPGFLSGTVTVTS------LWILVPSSQVDGKNVTCKVEHESF 201
Query: 58 EPKISIGYKLNV-VISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVN 116
E + L V + I G + ++ LTC P P+ W
Sbjct: 202 EKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNP-EPTGYNWSTT----- 255
Query: 117 YSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
+ + ++L+I + C +++ G A + V V
Sbjct: 256 -----MGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 40.5 bits (94), Expect = 2e-04
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 21/101 (20%)
Query: 87 GSDINLTCVVLETPDPPSFIY---WYR---GANVVNYSQRGGISVVTEKQTRTSR----- 135
G + L C + + + W R ++ + Q G S K+
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 136 ------LVISKAVTSDSGNYTC----APSSSDGASVVVHVL 166
L + D GNYTC P S + + VL
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 68.3 bits (167), Expect = 1e-14
Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 29/171 (16%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS--TE 58
+ W++ G + D + + L + S + D+G Y CQV E
Sbjct: 34 IQWVKD--------GAVVQNLDQLYIPVSEQHWIG-FLSLKSVERSDAGRYWCQVEDGGE 84
Query: 59 PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYS 118
+IS L V + +L + + L+C + P+P + I W+RG +
Sbjct: 85 TEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVT-IVWWRGTTKIGGP 143
Query: 119 QRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG----ASVVVHV 165
S V++ + S ++C + G + VH+
Sbjct: 144 A-------------PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 66.4 bits (162), Expect = 1e-14
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSD-------GSDEWTLKIASSQLRDSGTYEC 53
V W + +L + V Y +F S+HS SD WTL++ + Q++D G Y+C
Sbjct: 31 VFWQDQENLVLNEV----YLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQC 86
Query: 54 QVSTEPKISI 63
+ + +
Sbjct: 87 IIHHKKPTGM 96
Score = 34.0 bits (78), Expect = 0.007
Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 13/90 (14%)
Query: 87 GSDINLTCVVLETPDPPS---FIYWYRGANVVNYSQRGGISVVTEK----QTRTS----- 134
+L C + + ++W N+V G RTS
Sbjct: 9 NETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDS 68
Query: 135 -RLVISKAVTSDSGNYTCAPSSSDGASVVV 163
L + D G Y C ++
Sbjct: 69 WTLRLHNLQIKDKGLYQCIIHHKKPTGMIR 98
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 69.2 bits (169), Expect = 1e-14
Identities = 35/150 (23%), Positives = 52/150 (34%), Gaps = 18/150 (12%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVV---ISKAKIIGN--SELYIKS 86
+ W+L + S D G Y C V E I+ Y L+VV + + +
Sbjct: 73 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV 132
Query: 87 GSDINLTCVVLETPDPPSFIYWYRG--ANVVNYSQRGGISVVTEKQTR-----TSRLVIS 139
G D+ C V D I W + N Y G + K + L +
Sbjct: 133 GGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
+D+G Y C S+ G S + VL
Sbjct: 191 NVTEADAGEYICKVSNYIGQANQSAWLTVL 220
Score = 51.4 bits (123), Expect = 2e-08
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Query: 70 VISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK 129
+ + + + + + + C P P + W + R G V +
Sbjct: 17 YWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMP--TMRWLKNGKEFKQEHRIGGYKVRNQ 74
Query: 130 QTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
L++ V SD GNYTC + G + + V+
Sbjct: 75 ---HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 111
Score = 33.7 bits (77), Expect = 0.023
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP- 59
+ WI+ + + G + S+ L + + D+G Y C+VS
Sbjct: 150 IQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG 209
Query: 60 KISIGYKLNVV 70
+ + L V+
Sbjct: 210 QANQSAWLTVL 220
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 70.5 bits (172), Expect = 1e-14
Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 3/150 (2%)
Query: 19 YTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIG 78
D + S + + C E + +++
Sbjct: 174 VLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTT 233
Query: 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT--RTSRL 136
+L++K G + + C + + W + +S + +T R
Sbjct: 234 LPQLFLKVGEPLWIRCKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRILFA 292
Query: 137 VISKAVTSDSGNYTCAPSSSDGASVVVHVL 166
+S +D+G YTC+ S S +V ++
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPSQSALVTIV 322
Score = 63.6 bits (154), Expect = 3e-12
Identities = 19/137 (13%), Positives = 34/137 (24%), Gaps = 21/137 (15%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKII---GNSELYIKSGSDINLT 93
++S D+G Y C S P S + +V K I + + I + +
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPSQSA--LVTIV-EKGFINATNSSEDYEIDQYEEFCFS 347
Query: 94 CVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153
P W Q+G + G Y
Sbjct: 348 VRF--KAYPQIRCTWTFSRKSFPCEQKG--------LDNGYSISKFCNHKHQPGEYIFHA 397
Query: 154 SSSDG-----ASVVVHV 165
+ D ++ +
Sbjct: 398 ENDDAQFTKMFTLNIRR 414
Score = 58.9 bits (142), Expect = 1e-10
Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 11/130 (8%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
K S + S +Y VS P+ +G L S + + + + + I L +V
Sbjct: 16 NHKNNDSSVGKSSSYPM-VSESPE-DLGCALRPQSSGT-VYEAAAVEVDVSASITLQVLV 72
Query: 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC-APSS 155
+ W + +N + +VI K + +G Y S
Sbjct: 73 DAPGNIS--CLWVFKHSSLNCQPH-----FDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125
Query: 156 SDGASVVVHV 165
+ +++ V
Sbjct: 126 ATNYTILFTV 135
Score = 55.9 bits (134), Expect = 1e-09
Identities = 17/141 (12%), Positives = 38/141 (26%), Gaps = 18/141 (12%)
Query: 19 YTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKII 77
+ F + +++ + G Y + + + + LN+ K +++
Sbjct: 361 TFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI-RRKPQVL 419
Query: 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTR---- 132
S +C P P W + N ++ V K R
Sbjct: 420 -------AEASASQASCFSDGYPLPS--WTWKKCSDKSPNCTEEITEGVWNRKANRKVFG 470
Query: 133 --TSRLVISKAVTSDSGNYTC 151
S ++ + C
Sbjct: 471 QWVSSSTLNMSEAIKGFLVKC 491
Score = 48.2 bits (114), Expect = 6e-07
Identities = 13/126 (10%), Positives = 31/126 (24%), Gaps = 12/126 (9%)
Query: 27 SLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIK 85
++ I +G Y + +E +I + +++ + +
Sbjct: 94 HFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKM 153
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
D L C+ P+P + W E+ +
Sbjct: 154 ENQDA-LVCISESVPEP--IVEWVL--------CDSQGESCKEESPAVVKKEEKVLHELF 202
Query: 146 SGNYTC 151
+ C
Sbjct: 203 GTDIRC 208
Score = 34.3 bits (78), Expect = 0.023
Identities = 7/58 (12%), Positives = 15/58 (25%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
+W + D +T R + G + + S+ +C
Sbjct: 439 WTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNS 496
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 67.9 bits (166), Expect = 1e-14
Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 23/159 (14%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYEC--QVSTEPKISIGYKLNVVISKA 74
+T +D RF ++ ++ L+I + D G Y C +V +I + +V
Sbjct: 43 VTTISDNRF-AMLANN----NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPP 97
Query: 75 KIIGN---SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT 131
I + G ++ +C +P+P I W+R ++ +++ +
Sbjct: 98 AISMPQKSFNATAERGEEMTFSCRASGSPEP--AISWFRNGKLIEENEK--YILKGSNTE 153
Query: 132 RTSRLVISKAVTSDSGNYTCAPSSSDG-----ASVVVHV 165
L + + SD G Y C ++ G A + V V
Sbjct: 154 ----LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188
Score = 45.2 bits (107), Expect = 3e-06
Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 14/93 (15%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
S K G D + C V +P P + W V +++ + L I
Sbjct: 10 SPQEFKQGEDAEVVCRVSSSPAP--AVSWLYHNEEVTTISDNRFAMLAN-----NNLQIL 62
Query: 140 KAVTSDSGNYTC-APSSSDGAS------VVVHV 165
SD G Y C + G V+V+V
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 95
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 70.8 bits (173), Expect = 1e-14
Identities = 38/159 (23%), Positives = 58/159 (36%), Gaps = 25/159 (15%)
Query: 16 ILTYTND--LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNVVI 71
L + N+ L + +D TL + S D G YEC + E S LNV+
Sbjct: 320 YLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY 379
Query: 72 SKAKI-IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQ 130
I S Y + G +++L+C +PP+ W N+
Sbjct: 380 GPDDPTISPSYTYYRPGVNLSLSCHA--ASNPPAQYSWLIDGNIQQ-------------- 423
Query: 131 TRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
T L IS +SG YTC ++S + V +
Sbjct: 424 -HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461
Score = 68.4 bits (167), Expect = 7e-14
Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 29/154 (18%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNVVIS-KAKI 76
R + + TL + + D+ Y C + S L+V+ I
Sbjct: 508 PVSPRLQLSNGNR----TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPI 563
Query: 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRL 136
I + SG+++NL+C +P W ++Q L
Sbjct: 564 ISPPDSSYLSGANLNLSCHS--ASNPSPQYSWRINGIPQQHTQV---------------L 606
Query: 137 VISKAVTSDSGNYTCAPSSSDG-----ASVVVHV 165
I+K +++G Y C S+ + V
Sbjct: 607 FIAKITPNNNGTYACFVSNLATGRNNSIVKSITV 640
Score = 64.6 bits (157), Expect = 1e-12
Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 22/184 (11%)
Query: 1 VSWIR--KRDLHILTVGILTYTNDLRFTSLHSDG---SDEWTLKIASSQLRDSGTYECQV 55
SW + + D + +G + T +S +L I + D+G Y V
Sbjct: 31 YSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHV 90
Query: 56 STEPKISIGYKLNVVI----SKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111
++ + K I N+ ++ + TC ET D W+
Sbjct: 91 IKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEP-ETQDAT--YLWWVN 147
Query: 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA----SVVVHVLN 167
+ S R +S L + +D+ +Y C + A SV+++VL
Sbjct: 148 NQSLPVSPRLQLS------NGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLY 201
Query: 168 GKKF 171
G
Sbjct: 202 GPDA 205
Score = 63.8 bits (155), Expect = 3e-12
Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 23/156 (14%)
Query: 16 ILTYTND--LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNV-V 70
L + N+ L + + TL + + D+ +Y+C+ + S LNV
Sbjct: 142 YLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLY 201
Query: 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQ 130
A I +SG ++NL+C P W+
Sbjct: 202 GPDAPTISPLNTSYRSGENLNLSCHAASNPPAQ--YSWFVNGTFQQ-------------- 245
Query: 131 TRTSRLVISKAVTSDSGNYTC-APSSSDGASVVVHV 165
T L I ++SG+YTC A +S G +
Sbjct: 246 -STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT 280
Score = 47.3 bits (112), Expect = 1e-06
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT------------RTS 134
G ++ L L P WY+G V Q G + T++ T +
Sbjct: 14 GKEVLLLVHNL--PQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 71
Query: 135 RLVISKAVTSDSGNYTCAPSSSDGASVVVHV 165
L+I + +D+G YT SD +
Sbjct: 72 SLLIQNIIQNDTGFYTLHVIKSDLVNEEATG 102
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 68.6 bits (168), Expect = 3e-14
Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 16/154 (10%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAK 75
+ ++ R + + S L++ + + DSG Y C+ S L V
Sbjct: 140 IQESSKFRMSFVESVA----VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF 195
Query: 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSR 135
+ G+D++L C + TP P + W++ + ++ +++E +
Sbjct: 196 RKKPHPVETLKGADVHLECELQGTP-PFQ-VSWHKDKRELRSGKK--YKIMSENFLTS-- 249
Query: 136 LVISKAVTSDSGNYTCAPSSSDG-----ASVVVH 164
+ I ++D G Y C S+ G S+ +
Sbjct: 250 IHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 67.1 bits (164), Expect = 1e-13
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 26/173 (15%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-P 59
++W + + + + T + + TL + D+G Y C S
Sbjct: 37 ITWAKDN-------REIRPGGNYKMTLVENTA----TLTVLKVTKGDAGQYTCYASNVAG 85
Query: 60 KISIGYKLNVVISKAKIIG--NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNY 117
K S +L V + I +K C + +P+ + WY+ +
Sbjct: 86 KDSCSAQLG-VQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI--KVLWYKDETEIQE 142
Query: 118 SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG-----ASVVVHV 165
S + +S V + L + DSG+YTC ++ G S+ V
Sbjct: 143 SSKFRMSFVES----VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 191
Score = 53.2 bits (128), Expect = 9e-09
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ + G C V T I W + + +++V T+ L +
Sbjct: 13 VSVDLALGESGTFKCHVTGTAPI--KITWAKDNREIRPGGNYKMTLVEN----TATLTVL 66
Query: 140 KAVTSDSGNYTC-----APSSSDGASVVVHV 165
K D+G YTC A S A + V
Sbjct: 67 KVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 97
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 67.2 bits (164), Expect = 3e-14
Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 9/140 (6%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINL 92
+ +I + DSG Y C + V + G D +
Sbjct: 53 ASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMM 112
Query: 93 TCVVLETPDPPSFIYWYRGANVV--NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150
C + P P W + N V S G + K+ T +++ +T D G Y
Sbjct: 113 YCKSVGYP-HPE-WMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYE 170
Query: 151 C-----APSSSDGASVVVHV 165
C S+S + V V
Sbjct: 171 CNATNSIGSASVSTVLRVRV 190
Score = 53.3 bits (128), Expect = 4e-09
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 13/94 (13%)
Query: 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSR 135
+ + S + L C + + + YW + + T K
Sbjct: 7 VTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELT---------ATRKNASNME 57
Query: 136 LVISKAVTSDSGNYTC----APSSSDGASVVVHV 165
I+K DSG Y C + A++ V
Sbjct: 58 YRINKPRAEDSGEYHCVYHFVSAPKANATIEVKA 91
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 68.7 bits (168), Expect = 3e-14
Identities = 42/176 (23%), Positives = 64/176 (36%), Gaps = 33/176 (18%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP- 59
++W + + ++ R L S L+I SS+ D G YEC +
Sbjct: 140 ITWFKDFLP------VDPSASNGRIKQLRSG-----ALQIESSEETDQGKYECVATNSAG 188
Query: 60 -KISIGYKLNVVISKAK---IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV 115
+ S L V + I I G ++N+TCV + +P P ++ W +G
Sbjct: 189 VRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMP--YVKWMQG---- 242
Query: 116 NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG-----ASVVVHVL 166
+ E R V+ DS NYTC SS G A + V L
Sbjct: 243 ------AEDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSL 292
Score = 62.5 bits (152), Expect = 4e-12
Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 21/158 (13%)
Query: 24 RFTSLHSDGSDEWTLKIASSQL-RDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGN-- 79
RF ++ D S L+I + RD YEC +I++ KL V+ G
Sbjct: 51 RFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPN 110
Query: 80 -----SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTS 134
++ + C PDP I W++ V+ S G KQ R+
Sbjct: 111 IDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSASNGRI----KQLRSG 164
Query: 135 RLVISKAVTSDSGNYTCAPSSSDG------ASVVVHVL 166
L I + +D G Y C ++S G A++ V V
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQ 202
Score = 41.7 bits (98), Expect = 6e-05
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 9/91 (9%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ SG + C P P + W + VN + + ++ + L I
Sbjct: 14 KDQIGVSGGVASFVCQATGDPKP--RVTWNKKGKKVNSQRF---ETIEFDESAGAVLRIQ 68
Query: 140 KAVT-SDSGNYTCAPSSSDG---ASVVVHVL 166
T D Y C +S G + VL
Sbjct: 69 PLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 66.7 bits (163), Expect = 5e-14
Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 15/154 (9%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAK--- 75
+ S L I + +SG Y + + + + +L V A
Sbjct: 47 STSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF 106
Query: 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSR 135
+ + ++ GS + L V P P + +YR + S + E +
Sbjct: 107 VQRLQSMTVRQGSQVRLQVRVTGIPTPV--VKFYRDGAEIQSSLD--FQISQEGDLYS-- 160
Query: 136 LVISKAVTSDSGNYTCAPSSSDG-----ASVVVH 164
L+I++A DSG Y+ ++S G A ++V
Sbjct: 161 LLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 50.9 bits (122), Expect = 2e-08
Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ GS + P P + W+R V++ S G+ + L I
Sbjct: 17 VLEGSTATFEAHISGFPVP--EVSWFRDGQVISTSTLPGVQISFSDGRAK--LTIPAVTK 72
Query: 144 SDSGNYTCAPSSSDG---ASVVVHVLNGK---KF-NKLSSLRGRVGITLKF 187
++SG Y+ ++ G ++ + V F +L S+ R G ++
Sbjct: 73 ANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 67.6 bits (165), Expect = 9e-14
Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 34/173 (19%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNV--------- 69
R + + ++ L+I D G Y ++ L+
Sbjct: 150 RYSDRVKTGVTG--EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 207
Query: 70 ----------VISKAKIIGN--SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNY 117
++A+++G + I+ G +NLTC V DPP + W + +
Sbjct: 208 FQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKALAS 265
Query: 118 SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG-----ASVVVHV 165
+ + RT+ I+ T+DSG Y + G +V V +
Sbjct: 266 DDHCNL---KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315
Score = 60.7 bits (147), Expect = 2e-11
Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 13/150 (8%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIKSGSDIN 91
TL I +D+G YE + + K KL K ++ + S +D+
Sbjct: 58 DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLK 117
Query: 92 LTCVV--------LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ + + W + + YS R V T L I++
Sbjct: 118 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDR----VKTGVTGEQIWLQINEPTP 173
Query: 144 SDSGNYTCAPSSSDGASVVVHVLNGKKFNK 173
+D G Y L+G+ +++
Sbjct: 174 NDKGKYVMELFDGKTGHQKTVDLSGQAYDE 203
Score = 47.6 bits (113), Expect = 8e-07
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 13/109 (11%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ ++ L C V + I WY+ ++ ++ + + L+I++
Sbjct: 18 VTGECNVLLKCKVANIK-KETHIVWYKDEREISVDEK------HDFKDGICTLLITEFSK 70
Query: 144 SDSGNYTCAPSSSDG-----ASVVVHVLNGKKFNKLSSLRGRVGITLKF 187
D+G Y G +V + ++ LK
Sbjct: 71 KDAGIYEVILKDDRGKDKSRLKLVDEAFK-ELMMEVCKKIALSATDLKI 118
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 65.6 bits (160), Expect = 1e-13
Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 19/149 (12%)
Query: 27 SLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVISKAKIIGN-SELY 83
+ +G L I ++ + D+G Y CQ + L + K S
Sbjct: 50 VVQKEGVRS-RLTIYNANIEDAGIYRCQATDAKGQTQEATVVL-EIYQKLTFREVVSPQE 107
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
K G D + C V +P P+ + W V +++ + L I
Sbjct: 108 FKQGEDAEVVCRVSSSP-APA-VSWLYHNEEVTTISDNRFAMLAN-----NNLQILNINK 160
Query: 144 SDSGNYTCAPSSSDGAS-------VVVHV 165
SD G Y C V+V+V
Sbjct: 161 SDEGIYRCEGRVEARGEIDFRDIIVIVNV 189
Score = 51.7 bits (124), Expect = 1e-08
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
S++ + G TC +P S ++ + +QR VV +K+ SRL I
Sbjct: 10 SKVELSVGESKFFTCTA--IGEPESIDWYNPQGEKIISTQR----VVVQKEGVRSRLTIY 63
Query: 140 KAVTSDSGNYTCAPSSSDG----ASVVVHVLNGKKF-NKLSSLRGRVGITLKF 187
A D+G Y C + + G A+VV+ + F +S + G +
Sbjct: 64 NANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEV 116
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 67.5 bits (164), Expect = 1e-13
Identities = 29/194 (14%), Positives = 60/194 (30%), Gaps = 30/194 (15%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDE------WTLKIASSQLRDSGTYECQ 54
W + IL T + +D + L I + ++ DS TY C+
Sbjct: 26 FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICE 85
Query: 55 VSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV 114
V + + + + S+ ++ G + LT P +
Sbjct: 86 VEDQKEEVQLLVFGLTAN-------SDTHLLQGQSLTLTLES--PPGSSPSVQC------ 130
Query: 115 VNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC-APSSSDGASVVVHVLNGKKFNK 173
+ + +T L +S+ DSG +TC + + ++
Sbjct: 131 ----RSPRGKNIQGGKT----LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 182
Query: 174 LSSLRGRVGITLKF 187
S + + G ++F
Sbjct: 183 SSIVYKKEGEQVEF 196
Score = 56.3 bits (135), Expect = 1e-09
Identities = 24/133 (18%), Positives = 36/133 (27%), Gaps = 31/133 (23%)
Query: 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCV 95
TL A Q SG + + K+ L V+ + + NLTC
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA-------------TQLQKNLTCE 304
Query: 96 VLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155
V P + S+R V ++G + C S
Sbjct: 305 VWGPTSPKLMLSLKLENKEAKVSKREKAVWVLN---------------PEAGMWQCLLSD 349
Query: 156 SDG--ASVVVHVL 166
S + VL
Sbjct: 350 SGQVLLESNIKVL 362
Score = 52.1 bits (124), Expect = 2e-08
Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 23/146 (15%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVS-TEPKISIGYKLNVVISKAKIIGNSELYIKSGSDIN 91
TL ++ +L+DSGT+ C V + K+ + V+ + S +Y K G +
Sbjct: 139 QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS---SIVYKKEGEQVE 195
Query: 92 LTCVV-------------------LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR 132
+ + + V + + +K
Sbjct: 196 FSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPL 255
Query: 133 TSRLVISKAVTSDSGNYTCAPSSSDG 158
L + + SGN T A + G
Sbjct: 256 HLTLPQALPQYAGSGNLTLALEAKTG 281
Score = 40.2 bits (93), Expect = 2e-04
Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 15/80 (18%)
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGI-------------SVVTEKQT 131
K G + LTC + +W + +G S +
Sbjct: 7 KKGDTVELTCTASQKKSIQ--FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 132 RTSRLVISKAVTSDSGNYTC 151
L+I DS Y C
Sbjct: 65 GNFPLIIKNLKIEDSDTYIC 84
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 67.6 bits (164), Expect = 1e-13
Identities = 37/196 (18%), Positives = 62/196 (31%), Gaps = 31/196 (15%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP- 59
+ W R L I + R + ++ L + L D+G Y C +
Sbjct: 50 LIWYWTRQDRDLEEPINFRLPENRISK------EKDVLWFRPTLLNDTGNYTCMLRNTTY 103
Query: 60 KISIGYKLNVV----ISKAKIIGNSELYIKSGSDINLTCVVLE---TPDPPSFIYWYRGA 112
+ + L VV + + +TC ++ I WY G
Sbjct: 104 CSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC 163
Query: 113 NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHVLNGKKFN 172
+ L A+ S++GNYTC VV + NG+ F+
Sbjct: 164 YKIQNFNN--------VIPEGMNLSFLIALISNNGNYTC---------VVTYPENGRTFH 206
Query: 173 KLSSLRGRVGITLKFA 188
+L +V + K A
Sbjct: 207 LTRTLTVKVVGSPKNA 222
Score = 61.0 bits (147), Expect = 2e-11
Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 25/172 (14%)
Query: 19 YTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS-----TEPKISIGYKLNVVISK 73
Y + + ++ + L + + ++G Y C V+ ++ + VV S
Sbjct: 160 YMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSP 219
Query: 74 AKII--------GNSELYIKSGSDINLTCVVLET--PDPPSFIYWYRGANVVN------Y 117
+ + + G ++ + C V + D + ++W +
Sbjct: 220 KNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVT 279
Query: 118 SQRGGISVVTEKQTRTSRLVISKAVTSD-SGNYTCAPSSSDG---ASVVVHV 165
TE +TRT L I K + D +Y C S+ G + V
Sbjct: 280 INESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
Score = 39.9 bits (92), Expect = 3e-04
Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 13/93 (13%)
Query: 87 GSDINLTCVVLETPDPPSF---------IYWYRGANVVNYSQRGGISVVTEK-QTRTSRL 136
+ C + E ++ + WY + + + + L
Sbjct: 22 DEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVL 81
Query: 137 VISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
+ +D+GNYTC ++ + + V+
Sbjct: 82 WFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVV 114
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 67.1 bits (163), Expect = 1e-13
Identities = 24/178 (13%), Positives = 47/178 (26%), Gaps = 25/178 (14%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-- 58
S I + T T + + C +
Sbjct: 123 YSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAY------------HRLCVRCAAQRDGT 170
Query: 59 PKISIGYKLNVVISKAKI----IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV 114
S + L V + I + + +K G + C + + W +
Sbjct: 171 WLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKD-VSTSVNSMWLKMNPQ 229
Query: 115 VNYSQRGGISVVTE---KQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
+ + + R L IS A DSG + C +++ G + + V+
Sbjct: 230 PQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 47.0 bits (111), Expect = 9e-07
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRL 136
SEL +++G ++LTC+ P F+ W + + +
Sbjct: 17 PAQSELIVEAGDTLSLTCID------PDFVRWTFKTYFNEMVEN-----------KKNEW 59
Query: 137 VISKAVTSDSGNYTCAPSSSDGASVVVHV 165
+ KA + +G YTC+ S+ +S+ V V
Sbjct: 60 IQEKAEATRTGTYTCSNSNGLTSSIYVFV 88
Score = 44.7 bits (105), Expect = 7e-06
Identities = 19/144 (13%), Positives = 35/144 (24%), Gaps = 15/144 (10%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINL 92
+ + ++ +GTY C S SI + V + L+ K SD +
Sbjct: 54 NKKNEWIQEKAEATRTGTYTCSNSNGLTSSI--YVFVRDPAKLFLVGLPLFGKEDSDALV 111
Query: 93 TCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
C + T S + + + + + C
Sbjct: 112 RCPL--TDPQVSQYSLIECDGKSLPTDLTFVPNP------KAGITIKNVKRAYHRLCVRC 163
Query: 152 APSSSDG----ASVVVHVLNGKKF 171
A + V K
Sbjct: 164 AAQRDGTWLHSDKFTLKVREAIKA 187
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 67.9 bits (165), Expect = 1e-13
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 12/142 (8%)
Query: 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKA----KIIGNSELYIKSGSDIN 91
I S + +G C+ + VV+ + + + + G +
Sbjct: 184 GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLV 243
Query: 92 LTCVVLETPDPPSFIYWYRGANVVNY----SQRGGISVVTEKQTRTSRLVISKAVTSDSG 147
L C + W ++ + ++ +E + S L I SD G
Sbjct: 244 LNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG 303
Query: 148 NYTCAPSSSDG---ASVVVHVL 166
YTCA SS S V V
Sbjct: 304 LYTCAASSGLMTKKNSTFVRVH 325
Score = 65.2 bits (158), Expect = 1e-12
Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 16/173 (9%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS---T 57
I +L L L T + +D +++ ++ L+D G Y C T
Sbjct: 590 PLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKT 649
Query: 58 EPKISIGYKLNVVISKAKII--GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV 115
+ + + +L V+ A I G I ++C + +PP I W++ +
Sbjct: 650 KKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTA--SGNPPPQIMWFKDNETL 707
Query: 116 NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
+ GI + L I + D G YTC S G +
Sbjct: 708 --VEDSGIVLKDG----NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 754
Score = 64.8 bits (157), Expect = 2e-12
Identities = 16/154 (10%), Positives = 41/154 (26%), Gaps = 20/154 (12%)
Query: 31 DGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIKSGSD 89
+G ++ + S Y+C+ + + +V +I ++
Sbjct: 508 EGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHV-TRGPEITLQPDMQPTEQES 566
Query: 90 INLTCVVLETPDPPSFIYWYRGANVV----------------NYSQRGGISVVTEKQTRT 133
++L C + + WY+ + + ++ +
Sbjct: 567 VSLWCTADRSTFE--NLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDI 624
Query: 134 SRLVISKAVTSDSGNYTCAPSSSDGASVVVHVLN 167
+ + A D G+Y C V
Sbjct: 625 LIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ 658
Score = 62.1 bits (150), Expect = 1e-11
Identities = 31/156 (19%), Positives = 46/156 (29%), Gaps = 22/156 (14%)
Query: 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIG- 78
DL+ S TL I D G Y C S+ + V G
Sbjct: 275 RDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGS 334
Query: 79 --NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRL 136
S + G + + PP I WY+ + + L
Sbjct: 335 GMESLVEATVGERVRIPAKY--LGYPPPEIKWYKNGIPLESNHT---------IKAGHVL 383
Query: 137 VISKAVTSDSGNYTCAPSSSDG-------ASVVVHV 165
I + D+GNYT ++ S+VV+V
Sbjct: 384 TIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV 419
Score = 60.9 bits (147), Expect = 3e-11
Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 21/164 (12%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP- 59
+ W+ + + + SDG TL I D+G Y+C
Sbjct: 59 LDWLWPNNQSGSEQRV--------EVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDL 110
Query: 60 KISIGYKLNV-----VISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV 114
I + + S + G + + + C+ + S Y
Sbjct: 111 ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRF 170
Query: 115 VNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
V R I + S +G C +D
Sbjct: 171 VPDGNRISWD-------SKKGFTIPSYMISYAGMVFCEAKINDE 207
Score = 57.5 bits (138), Expect = 5e-10
Identities = 31/189 (16%), Positives = 54/189 (28%), Gaps = 39/189 (20%)
Query: 37 TLKIASSQLRDSGTYECQVS-TEPKISIGYKLNVVISKAKIIGNSELY-----IKSGSDI 90
L I RD+G Y ++ K + +++V+ IG L + G+
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ 441
Query: 91 NLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT------------------- 131
LTC V P PP I+WY ++ VT
Sbjct: 442 TLTCTVYAIP-PPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN 500
Query: 132 ----------RTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVLNGKKFNKLSSLR 178
+ + + S Y C + G + HV G + ++
Sbjct: 501 KNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQ 560
Query: 179 GRVGITLKF 187
++
Sbjct: 561 PTEQESVSL 569
Score = 55.9 bits (134), Expect = 2e-09
Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 13/160 (8%)
Query: 40 IASSQLRDSGTYECQVSTEP-KISIGYKLNV-VISKAKIIGNSELYIKSGSDINLTCVVL 97
+ S L + C + L++ +S K L IK+ + + +TC
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDLPRLSIQK----DILTIKANTTLQITC--- 53
Query: 98 ETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157
+ W N QR ++ L I K + +D+G Y C +D
Sbjct: 54 -RGQRD--LDWLWPNNQSGSEQRVEVTE-CSDGLFCKTLTIPKVIGNDTGAYKCFYRETD 109
Query: 158 GASVVVHVLNGKKFNKLSSLRGRVGITLKFALRRSRVRFP 197
ASV+ + + ++S+ + G+ + V P
Sbjct: 110 LASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIP 149
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 66.8 bits (163), Expect = 2e-13
Identities = 28/134 (20%), Positives = 42/134 (31%), Gaps = 11/134 (8%)
Query: 37 TLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCV 95
L+I + DSG Y C S + I + V + + L + G D L C
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCR 335
Query: 96 VLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155
P P + W + + V ++ S Y C S+
Sbjct: 336 ANGNPKPT--VQWMVNGEPLQSAPPNPNREVAG-----DTIIFRDTQISSRAVYQCNTSN 388
Query: 156 SDG---ASVVVHVL 166
G A+ V VL
Sbjct: 389 EHGYLLANAFVSVL 402
Score = 59.9 bits (145), Expect = 6e-11
Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 44/186 (23%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDS-GTYECQVS--- 56
+ W+ I T D R + H +G L ++ L+D Y C
Sbjct: 149 IFWMSSSMEPI--------TQDKRVSQGH-NG----DLYFSNVMLQDMQTDYSCNARFHF 195
Query: 57 -TEPKISIGYKLNVVISKAKI----------IGNSELYIKSGSDINLTCVVLETPDPPSF 105
+ + L V+ ++ S + G D+ L C+ + P
Sbjct: 196 THTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA--SGVPTPD 253
Query: 106 IYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG-----A 159
I WY+ G ++ + + + L I+ DSG Y C S+ G
Sbjct: 254 IAWYKKGGDLPSDKAK--------FENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTI 305
Query: 160 SVVVHV 165
SV V
Sbjct: 306 SVRVKA 311
Score = 53.7 bits (129), Expect = 6e-09
Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 15/142 (10%)
Query: 54 QVSTEPKISIGYKLNVVISKAKIIGN--SELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111
++ +P I N + I + + +I + C P P +W R
Sbjct: 2 EIPMDPSIQ-----NELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAP--SFHWTRN 54
Query: 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG------ASVVVHV 165
+ N ++ +S+ T G Y C + G + V
Sbjct: 55 SRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114
Query: 166 LNGKKFNKLSSLRGRVGITLKF 187
L + + G L
Sbjct: 115 SPLWPKENLDPVVVQEGAPLTL 136
Score = 52.2 bits (125), Expect = 2e-08
Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 21/194 (10%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNV-VISK 73
D R + G+ + G Y+C + +S +L V
Sbjct: 58 FNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPL 117
Query: 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTR 132
+ ++ G+ + L C P I+W + +R +S
Sbjct: 118 WPKENLDPVVVQEGAPLTLQCNPPPG-LPSPVIFWMSSSMEPITQDKR--VSQ-----GH 169
Query: 133 TSRLVISKAVTSDS-GNYTC--------APSSSDGASVVVHVLNGKKFNKLSSLRGRVGI 183
L S + D +Y+C + ++ V G S + +
Sbjct: 170 NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTA 229
Query: 184 TLKFALRRSRVRFP 197
+ + LR +
Sbjct: 230 SSQMVLRGMDLLLE 243
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 67.3 bits (163), Expect = 2e-13
Identities = 26/177 (14%), Positives = 56/177 (31%), Gaps = 14/177 (7%)
Query: 3 WIRKRDLHILTVGILTYTN-------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
W +L + + R + L G+ +T+ + RD+G Y C
Sbjct: 366 WCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT 425
Query: 56 STEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLE--TPDPPSFIYWYRGAN 113
+ + ++ ++ + + + G + + C + + W
Sbjct: 426 NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGC 485
Query: 114 VVNYSQ---RGGISVVTEKQTRTSRLVISKAVTSDSGNYTC--APSSSDGASVVVHV 165
SQ V ++ +R L ++ +D G Y C G + V+V
Sbjct: 486 QALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYV 542
Score = 53.5 bits (127), Expect = 9e-09
Identities = 21/155 (13%), Positives = 45/155 (29%), Gaps = 13/155 (8%)
Query: 27 SLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-----KISIGYKLNVVISKAKIIGNS- 80
+ G +++ I +L D+G Y CQ + + + + S
Sbjct: 176 DIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSV 235
Query: 81 ----ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRL 136
L + + C + + + G I + + + + +
Sbjct: 236 TFHCALGPEVANVAKFLCRQ--SSGENCDVVVNTLGKRAP-AFEGRILLNPQDKDGSFSV 292
Query: 137 VISKAVTSDSGNYTCAPSSSDGASVVVHVLNGKKF 171
VI+ D+G Y C S + + F
Sbjct: 293 VITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLF 327
Score = 51.9 bits (123), Expect = 3e-08
Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 19/191 (9%)
Query: 11 ILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69
I + G ++ R + + + + IA DSG Y+C + +S L V
Sbjct: 50 ISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV 109
Query: 70 VISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANV-------------VN 116
+ + G + + C Y+ + N
Sbjct: 110 SQGPGLLNDTKVYTVDLGRTVTINCPFKTEN-AQKRKSLYKQIGLYPVLVIDSSGYVNPN 168
Query: 117 YSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA---PSSSDGASVVVHVLNGKKFNK 173
Y+ R + + +VI++ SD+G Y C S+S+ + + VL +
Sbjct: 169 YTGRIRLD-IQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELV 227
Query: 174 LSSLRGRVGIT 184
LRG V
Sbjct: 228 YEDLRGSVTFH 238
Score = 43.8 bits (102), Expect = 2e-05
Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 3/96 (3%)
Query: 3 WIR-KRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKI 61
W + + + + S +L + D G Y C V
Sbjct: 477 WCKWNNTGCQALPSQDEGPS--KAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFY 534
Query: 62 SIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVL 97
+ V + + K G+ ++ + V+
Sbjct: 535 GETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLD 570
Score = 40.0 bits (92), Expect = 3e-04
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 73 KAKIIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGA------------NVVNYSQ 119
K+ I G E+ G+ +++TC T + + YW R V+
Sbjct: 1 KSPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKY 60
Query: 120 RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
G ++ + T + I++ DSG Y C +
Sbjct: 61 AGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSR 99
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 66.0 bits (161), Expect = 3e-13
Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 23/159 (14%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVISKA 74
+T +D RF L ++ L+I + D G Y C+ E +I + +V
Sbjct: 139 VTTISDNRFAMLANN-----NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPP 193
Query: 75 KIIGN---SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT 131
I + G ++ +C +P P+ I W+R ++ +++ +
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSP-EPA-ISWFRNGKLIEENEK--YILKGS--- 246
Query: 132 RTSRLVISKAVTSDSGNYTCAPSSSDG-----ASVVVHV 165
+ L + + SD G Y C ++ G A + V V
Sbjct: 247 -NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284
Score = 64.8 bits (158), Expect = 7e-13
Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 11/134 (8%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNVVISKAKII 77
+ R L I ++ + D+G Y CQ + L +
Sbjct: 46 ISTQRVVVQKEGVRS--RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE 103
Query: 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLV 137
S K G D + C V +P P + W V +++ + L
Sbjct: 104 VVSPQEFKQGEDAEVVCRVSSSPAP--AVSWLYHNEEVTTISDNRFAMLA-----NNNLQ 156
Query: 138 ISKAVTSDSGNYTC 151
I SD G Y C
Sbjct: 157 ILNINKSDEGIYRC 170
Score = 47.5 bits (113), Expect = 7e-07
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
S++ + G TC +P S ++ + +QR VV +K+ SRL I
Sbjct: 12 SKVELSVGESKFFTCTA--IGEPESIDWYNPQGEKIISTQR----VVVQKEGVRSRLTIY 65
Query: 140 KAVTSDSGNYTCAPSSSDG------ASVVVHV 165
A D+G Y C + + G + ++
Sbjct: 66 NANIEDAGIYRCQATDAKGQTQEATVVLEIYQ 97
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 65.3 bits (159), Expect = 3e-13
Identities = 33/152 (21%), Positives = 47/152 (30%), Gaps = 21/152 (13%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAK-----IIGNSELYIKS 86
+W+L + S D G Y C V + I Y L+V+ +
Sbjct: 69 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 128
Query: 87 GSDINLTCVVLETPDPPSFIYWYRG--ANVVNYSQRGGISVVTEKQ------TRTSRLVI 138
GSD+ C V D I W + N G V K RL +
Sbjct: 129 GSDVEFHCKV--YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186
Query: 139 SKAVTSDSGNYTCAPSSSDG-----ASVVVHV 165
+ D G Y C ++ G + VH
Sbjct: 187 ANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218
Score = 53.0 bits (127), Expect = 6e-09
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 70 VISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK 129
++ + + L + + + + C P P I W + R G + +
Sbjct: 13 YWTRPERMDKKLLAVPAANTVRFRCPAAGNPTP--SISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 130 QTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
Q LV+ V SD GNYTC + G + + VL
Sbjct: 71 Q---WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 107
Score = 33.0 bits (75), Expect = 0.050
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 1 VSWIRKRDLHILTVGI-LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
+ W++ +++ VG T + + + + L++A+ RD G Y C+ +
Sbjct: 146 IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRAT 202
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 66.5 bits (162), Expect = 3e-13
Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 26/183 (14%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS---- 56
++W K+ L D R T+ + + + + D Y C
Sbjct: 133 ITW--KKRLSGADPNADVTDFDRRITAGPD--GNLYFTIVTKEDVSDIYKYVCTAKNAAV 188
Query: 57 TEPKISIGYKLNVVISKAK--------IIGNSELYIKSGSDINLTCVVLETPDPPSFIYW 108
E + + Y++ V + ++ K+G + C+ +P + +
Sbjct: 189 DEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY--GSNPMGYPNY 246
Query: 109 YRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG------ASVV 162
++ VN + I+ + L+ + D G YTC + G +
Sbjct: 247 FKNGKDVNGNPEDRITRHNRTSGKR--LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLT 304
Query: 163 VHV 165
V
Sbjct: 305 VVS 307
Score = 62.2 bits (151), Expect = 8e-12
Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 28/172 (16%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-- 58
++ + + + R T + L ++ D G Y C+V
Sbjct: 244 PNYFKNG-------KDVNGNPEDRITRHNRTSGK--RLLFKTTLPEDEGVYTCEVDNGVG 294
Query: 59 PKISIGYKLNVVISKAKII--GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVN 116
KL VV S K + +K G D+ + C V P P + W A ++
Sbjct: 295 KPQKHSLKLTVV-SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN--VVWSHNAKPLS 351
Query: 117 YSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
+ S LVI D G Y C ++ G +V V
Sbjct: 352 GGRA---------TVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 49.9 bits (119), Expect = 1e-07
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 6/127 (4%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGN--SELYIKSGSDINLTC 94
+L Q D G Y+C T ++ ++ + E G L C
Sbjct: 63 SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDC 122
Query: 95 VVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS---KAVTSDSGNYTC 151
V+ P I W + + + + L + K SD Y C
Sbjct: 123 VL-PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVC 181
Query: 152 APSSSDG 158
++
Sbjct: 182 TAKNAAV 188
Score = 46.8 bits (111), Expect = 1e-06
Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 11/113 (9%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+E+ + + L C++ W + N+ + E LV
Sbjct: 14 AEVLFRENNPTVLECIIEGND-QGVKYSWKKDGKSYNWQEHNAALRKDE-----GSLVFL 67
Query: 140 KAVTSDSGNYTCAPSSSDGA----SVVVHVLNGKKF-NKLSSLRGRVGITLKF 187
+ SD G+Y C + G + K G +
Sbjct: 68 RPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 66.0 bits (161), Expect = 4e-13
Identities = 31/134 (23%), Positives = 48/134 (35%), Gaps = 14/134 (10%)
Query: 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCV 95
L I + D GTYEC+ + + ++ + + ++ GSD+ +CV
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCV 317
Query: 96 VLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155
P P + W R + R + L SK V DSG Y C +
Sbjct: 318 ASGKPRPA--VRWLRDGQPLASQNR--------IEVSGGELRFSKLVLEDSGMYQCVAEN 367
Query: 156 SDG---ASVVVHVL 166
G AS + V
Sbjct: 368 KHGTVYASAELTVQ 381
Score = 65.3 bits (159), Expect = 6e-13
Identities = 31/182 (17%), Positives = 56/182 (30%), Gaps = 39/182 (21%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS---- 56
W+ + + + RF S + G L IA ++ D G Y C +
Sbjct: 134 YRWLLNEFPNFIP------ADGRRFVSQ-TTG----NLYIAKTEASDLGNYSCFATSHID 182
Query: 57 --TEPKISIGYKLNVVISKAK-------IIGNSELYIKSGSDINLTCVVLETPDPPSFIY 107
T+ S +L++ A+ ++ Y +G + L C +P I
Sbjct: 183 FITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA--FGNPVPQIK 240
Query: 108 WYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVH 164
W + S ++ + L I D G Y C + G +
Sbjct: 241 WRKL----------DGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII 290
Query: 165 VL 166
+
Sbjct: 291 IH 292
Score = 53.3 bits (128), Expect = 9e-09
Identities = 29/145 (20%), Positives = 45/145 (31%), Gaps = 13/145 (8%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNV-VISK 73
L D R+ G + + +D+G+Y+C + +S L + +
Sbjct: 48 LKMGPDSRYR--LVAGD---LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQE 102
Query: 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRT 133
+ I G + TC S W G V T
Sbjct: 103 FSAEERDPVKITEGWGVMFTCSPPPHYPALS-YRWLLNEFPNFIPADGRRFVSQT----T 157
Query: 134 SRLVISKAVTSDSGNYTCAPSSSDG 158
L I+K SD GNY+C +S
Sbjct: 158 GNLYIAKTEASDLGNYSCFATSHID 182
Score = 37.5 bits (87), Expect = 0.002
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 13/109 (11%)
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
+ + LTC +PP+ W + +V ++ +
Sbjct: 20 SAEEKVTLTCRA--RANPPATYRWKMNGTELKMGPDSRYRLVAG-----DLVISNPVKAK 72
Query: 145 DSGNYTCAPSSSDG------ASVVVHVLNGKKFNKLSSLRGRVGITLKF 187
D+G+Y C +++ G AS+ L + ++ G + F
Sbjct: 73 DAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMF 121
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 66.0 bits (161), Expect = 4e-13
Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 14/134 (10%)
Query: 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCV 95
L+I + Q D+G+YEC K +L + +++++ + C
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECK 318
Query: 96 VLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155
P P W + + + R I L I+ SD+G Y C +
Sbjct: 319 ANGRPKPT--YRWLKNGDPLLTRDRIQIE--------QGTLNITIVNLSDAGMYQCVAEN 368
Query: 156 SDG---ASVVVHVL 166
G +S + V+
Sbjct: 369 KHGVIFSSAELSVI 382
Score = 65.2 bits (159), Expect = 7e-13
Identities = 31/183 (16%), Positives = 52/183 (28%), Gaps = 41/183 (22%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS---- 56
+WI ++ RF S + L IA + D G Y C V+
Sbjct: 135 YAWIFNEYPSY--------QDNRRFVSQETG-----NLYIAKVEKSDVGNYTCVVTNTVT 181
Query: 57 TEPKISIGYKLNVVISKAK--------IIGNSELYIKSGSDINLTCVVLETPDPPSFIYW 108
+ L + + + + G+ + L C +P I W
Sbjct: 182 NHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA--LGNPVPTILW 239
Query: 109 YRGANVVNYSQRGGISVVTEKQTR--TSRLVISKAVTSDSGNYTCAPSSSDG---ASVVV 163
R G + + + L I D+G+Y C +S G A +
Sbjct: 240 RRA---------DGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Query: 164 HVL 166
Sbjct: 291 TFY 293
Score = 51.0 bits (122), Expect = 5e-08
Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 15/145 (10%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNV-VISK 73
+ D R++ DGS L ++ +D+GTY+C + +S KL +
Sbjct: 49 VDIGMDFRYS--VVDGS---LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLEN 103
Query: 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRT 133
K S + ++ G + L C S W R +S T
Sbjct: 104 FKTRTRSTVSVRRGQGMVLLCGPPPHSGELS-YAWIFNEYPSYQDNRRFVS------QET 156
Query: 134 SRLVISKAVTSDSGNYTCAPSSSDG 158
L I+K SD GNYTC +++
Sbjct: 157 GNLYIAKVEKSDVGNYTCVVTNTVT 181
Score = 37.5 bits (87), Expect = 0.002
Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 13/108 (12%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
+ L+C V P P I W V+ SVV S L+ + T D
Sbjct: 22 EEKKVKLSCEVKGNPKP--HIRWKLNGTDVDIGMDFRYSVVDG-----SLLINNPNKTQD 74
Query: 146 SGNYTCAPSSSDG------ASVVVHVLNGKKFNKLSSLRGRVGITLKF 187
+G Y C ++S G A + L K S++ R G +
Sbjct: 75 AGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 65.7 bits (160), Expect = 5e-13
Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 28/181 (15%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDS-GTYECQVS--- 56
VSW + + D ++ L S G L I D +Y+C+
Sbjct: 138 VSWHTDEEENYFPGA----EYDGKYLVLPS-G----ELHIREVGPEDGYKSYQCRTKHRL 188
Query: 57 -TEPKISIGYKLNVVIS-------KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYW 108
E ++S V+ + + L + I+L C P W
Sbjct: 189 TGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPA--QGFPAPSFRW 246
Query: 109 YRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
Y+ Q ++ ++ + T L+I AV DSG Y C ++S G V+ V
Sbjct: 247 YKFIEGTTRKQAVVLNDRVKQVSGT--LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 304
Query: 166 L 166
Sbjct: 305 T 305
Score = 61.9 bits (150), Expect = 1e-11
Identities = 27/133 (20%), Positives = 41/133 (30%), Gaps = 20/133 (15%)
Query: 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCV 95
TL I + + DSG Y C V+ S+ L V + I + G TC
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQ 330
Query: 96 VLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155
P + W + + +S+ L I D G Y C +
Sbjct: 331 YTGNPIKT--VSWMKDGKAIGHSES--------------VLRIESVKKEDKGMYQCFVRN 374
Query: 156 SDG---ASVVVHV 165
AS + +
Sbjct: 375 DRESAEASAELKL 387
Score = 51.1 bits (122), Expect = 5e-08
Identities = 22/174 (12%), Positives = 47/174 (27%), Gaps = 24/174 (13%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIAS------SQLRDSGTYECQ 54
+ WIR + + + SDG L Q + Y C
Sbjct: 36 IIWIRSDGTAV--------GDVPGLRQISSDG----KLVFPPFRAEDYRQEVHAQVYACL 83
Query: 55 VSTE--PKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLE-TPDPPSFIYWYRG 111
+ IS + V+++ ++ ++ G+ + C++ D + W+
Sbjct: 84 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD 143
Query: 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS-GNYTCAPSSSDGASVVVH 164
+ + L I + D +Y C +
Sbjct: 144 EEENYFPGAEYDGKYL--VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLS 195
Score = 34.9 bits (80), Expect = 0.014
Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 18/119 (15%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ + + + + C P P I W R G + ++ +LV
Sbjct: 12 NRIDFSNSTGAEIECKASGNPMP--EIIWIRSDGTAVGDVPGLRQISSD-----GKLVFP 64
Query: 140 KAVTSD------SGNYTCAPSSSDGA----SVVVHVLNGKKFN-KLSSLRGRVGITLKF 187
D + Y C + G+ V V + + + ++ G +
Sbjct: 65 PFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVI 123
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 64.1 bits (156), Expect = 5e-13
Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 21/136 (15%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
+ I ++ + DSG Y CQ S +L V ++ K I+L C
Sbjct: 55 SYFIDAATVDDSGEYRCQTQLSTL-SDPVQLEV-HIGWLLLQAPRWVFKEEDPIHLRCHS 112
Query: 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC----- 151
+ + + + Y S I KA DSG+Y C
Sbjct: 113 WKNT-ALHKVTYLQNGKGRKYFHHN------------SDFYIPKATLKDSGSYFCRGLVG 159
Query: 152 -APSSSDGASVVVHVL 166
SS+ + +
Sbjct: 160 SKNVSSETVQITITQG 175
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 63.3 bits (154), Expect = 6e-13
Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 21/133 (15%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
+ DSG Y CQ +S L V + + ++ L + G I L C
Sbjct: 52 PSYRFKANNNDSGEYTCQTGQ-TSLSDPVHLTV-LFEWLVLQTPHLEFQEGETIMLRCHS 109
Query: 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA---- 152
+ P + +++ +S I +A S SG+Y C
Sbjct: 110 WKDK-PLVKVTFFQNGKSQKFSHLD------------PTFSIPQANHSHSGDYHCTGNIG 156
Query: 153 --PSSSDGASVVV 163
SS ++ V
Sbjct: 157 YTLFSSKPVTITV 169
Score = 45.6 bits (108), Expect = 1e-06
Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 17/117 (14%)
Query: 73 KAKIIGN-SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT 131
KA + + + + LTC +P+ S I W+ N++ T
Sbjct: 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDS-IQWFHNGNLI--------------PT 48
Query: 132 RTSRLVISKAVTSDSGNYTC-APSSSDGASVVVHVLNGKKFNKLSSLRGRVGITLKF 187
T KA +DSG YTC +S V + VL + L + G T+
Sbjct: 49 HTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIML 105
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 64.6 bits (157), Expect = 6e-13
Identities = 27/135 (20%), Positives = 42/135 (31%), Gaps = 20/135 (14%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
+ +I S+ + DSG Y CQ + + ++ S G + L C
Sbjct: 49 SYRITSASVNDSGEYRCQRGLSGRSDPIQ--LEIHRGWLLLQVSSRVFTEGEPLALRCHA 106
Query: 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC----- 151
+ + +YR + L I K S +G Y C
Sbjct: 107 WKDK-LVYNVLYYRNGKAFKFFHWNSN------------LTILKTNISHNGTYHCSGMGK 153
Query: 152 APSSSDGASVVVHVL 166
+S G SV V L
Sbjct: 154 HRYTSAGISVTVKEL 168
Score = 61.9 bits (150), Expect = 6e-12
Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 22/157 (14%)
Query: 19 YTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS-TEPKISIGYKLNVVI--SKAK 75
Y N F H + L I + + +GTY C S G + V
Sbjct: 118 YRNGKAFKFFHWNS----NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPV 173
Query: 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSR 135
+ + + G+ + L+C P ++ G ++ + +S
Sbjct: 174 LNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFS-------FYMGSKTL--RGRNTSSE 224
Query: 136 LVISKAVTSDSGNYTCAPSSSDG------ASVVVHVL 166
I A DSG Y C ++ DG + + VL
Sbjct: 225 YQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261
Score = 45.7 bits (108), Expect = 3e-06
Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ + L C VL P S W+ QT T I+ A
Sbjct: 13 VFQEETVTLHCEVLHLPGSSS-TQWFLNGTAT--------------QTSTPSYRITSASV 57
Query: 144 SDSGNYTC-APSSSDGASVVVHVLNGKKFNKLSSLRGRVGITLKF 187
+DSG Y C S + + + G ++SS G L
Sbjct: 58 NDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLAL 102
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 63.0 bits (153), Expect = 7e-13
Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 21/133 (15%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
+ I ++ + DSG Y CQ + S +L V ++ K I+L C
Sbjct: 55 SYFIDAATVNDSGEYRCQTNLSTL-SDPVQLEV-HIGWLLLQAPRWVFKEEDPIHLRCHS 112
Query: 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC----- 151
+ + + + Y S I KA DSG+Y C
Sbjct: 113 WKNT-ALHKVTYLQNGKDRKYFHHN------------SDFHIPKATLKDSGSYFCRGLVG 159
Query: 152 -APSSSDGASVVV 163
SS+ ++ +
Sbjct: 160 SKNVSSETVNITI 172
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 64.2 bits (155), Expect = 8e-13
Identities = 35/171 (20%), Positives = 57/171 (33%), Gaps = 35/171 (20%)
Query: 28 LHSDGSDEWTLKIASSQLRDSGTYECQVSTEP------KISIGYKLNVVISKAK----II 77
TL++ +D G Y CQV+ + L V +
Sbjct: 82 ASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVS 141
Query: 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN------------VVNYSQRGGISV 125
+ + G+DI +TC T + + WY G + N +Q G
Sbjct: 142 TAEVVQVDEGNDITMTCPC--TDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWF 199
Query: 126 VTEKQTRTSR-----LVISKAVTSDSGNYTCAPSSSDG------ASVVVHV 165
+E R S LVI A +D+G C ++ G +S ++ V
Sbjct: 200 SSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250
Score = 36.8 bits (84), Expect = 0.003
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 26/119 (21%)
Query: 80 SELYIKSGSDINLTC-VVLETPDPPSFIYWYRGANV--------VNYSQRGGISVVTEKQ 130
+E+ + +G + L C L P I W +GA+ NY+ +G E
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69
Query: 131 TRTSR-----------------LVISKAVTSDSGNYTCAPSSSDGASVVVHVLNGKKFN 172
+ L ++ D G Y C + +
Sbjct: 70 SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 128
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 63.4 bits (154), Expect = 9e-13
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 28/163 (17%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNVVISKA 74
+ T D R ++G L IA+ + D G Y C VS+ K + ++
Sbjct: 51 VFITMDKRRFVSQTNG----NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPE 106
Query: 75 KIIGN---------SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISV 125
+ ++Y G ++ L C L P P I W + + +
Sbjct: 107 RTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVP--DIRWRKVLEPMPSTAE----- 159
Query: 126 VTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
T + L I D G Y C + G ++V
Sbjct: 160 ---ISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 55.3 bits (133), Expect = 7e-10
Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
E+ +K G + L C W V + V L I+
Sbjct: 16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT----NGNLYIA 71
Query: 140 KAVTSDSGNYTCAPSSSDG 158
SD GNY+C SS
Sbjct: 72 NVEASDKGNYSCFVSSPSI 90
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 65.0 bits (158), Expect = 9e-13
Identities = 34/152 (22%), Positives = 51/152 (33%), Gaps = 20/152 (13%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAK-----IIGNSELYIKS 86
+W+L + S D G Y C V + I Y L+V+ +
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 236
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNY----SQRGGISVVTEKQTRTSR-----LV 137
GSD+ C V D I W + V ++V+ T+ L
Sbjct: 237 GSDVEFHCKV--YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLS 294
Query: 138 ISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
+ D+G YTC +S G S + VL
Sbjct: 295 LHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 62.7 bits (152), Expect = 5e-12
Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 34/162 (20%)
Query: 34 DEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVV----------------------- 70
L++ ++ DSG Y C+ ++ + + V
Sbjct: 59 GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118
Query: 71 ---ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVT 127
++ + + L + + + + C P PS I W + R G +
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNP-TPS-ISWLKNGREFRGEHRIGGIKL- 175
Query: 128 EKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
+ + LV+ V SD GNYTC + G + + VL
Sbjct: 176 --RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 215
Score = 48.8 bits (116), Expect = 2e-07
Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 9/101 (8%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+L SG + L+C W + + S+R RL +
Sbjct: 16 EQLVFGSGDAVELSCPPPGGGPMGP-TVWVKDGTGLVPSER--------VLVGPQRLQVL 66
Query: 140 KAVTSDSGNYTCAPSSSDGASVVVHVLNGKKFNKLSSLRGR 180
A DSG Y+C + V + G
Sbjct: 67 NASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGE 107
Score = 35.4 bits (81), Expect = 0.008
Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 1 VSWIR--KRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
+ W++ + + + Y L+ ++ + L + + D+G Y C
Sbjct: 254 IQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGN- 312
Query: 59 PKISIGY-----KLNVVISKAKII 77
SIG+ L V+ ++ +++
Sbjct: 313 ---SIGFSHHSAWLVVLPAEEELV 333
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 62.7 bits (152), Expect = 1e-12
Identities = 29/144 (20%), Positives = 44/144 (30%), Gaps = 9/144 (6%)
Query: 28 LHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSG 87
L D + G Y C EP + + + S +I G
Sbjct: 41 LKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTA--NIQLHGPPRVKAVKSSEHINEG 98
Query: 88 SDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGIS--VVTEKQTRTSRLVISKA-VTS 144
L C P P + WY+ + + + G S L I + +
Sbjct: 99 ETAMLVCKSESVP-PVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA 157
Query: 145 DSGNYTCAPSSSDG---ASVVVHV 165
D G Y C +SS G A + + V
Sbjct: 158 DPGQYRCNGTSSKGSDQAIITLRV 181
Score = 51.2 bits (122), Expect = 2e-08
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
GS I LTC + ++ + W +G V+ E +
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVL-----------KEDALPGQKTEFKVDSDDQ 60
Query: 146 SGNYTCAPSSSDGASVVVHVLNGKKFNKLSS 176
G Y+C + + + + + S
Sbjct: 61 WGEYSCVFLPEPMGTANIQLHGPPRVKAVKS 91
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 64.5 bits (156), Expect = 1e-12
Identities = 28/127 (22%), Positives = 40/127 (31%), Gaps = 11/127 (8%)
Query: 37 TLKIASSQLRDSGT-YECQVSTEPKISIGYKLNVVISKAKII--GNSELYIKSGSDINLT 93
L IA+ DS Y C V+T+ + + I K EL I+L
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLY 149
Query: 94 CVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153
C +L + I WY+ + + L+I DSG Y C
Sbjct: 150 CGILYAKHYNN-ITWYKNNQELIIDGT-------KYSQSGQNLIIHNPELEDSGRYDCYV 201
Query: 154 SSSDGAS 160
D
Sbjct: 202 HYDDVRI 208
Score = 61.8 bits (149), Expect = 1e-11
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 15/147 (10%)
Query: 34 DEWTLKIASSQLRDSGTYECQVS-TEPKISIGYKLNVVIS---------KAKIIGNSELY 83
L I + +L DSG Y+C V + +I ++ + K+I + ++
Sbjct: 180 SGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKIN 239
Query: 84 IKSGSDINLTCVVLETPDP--PSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISK 140
+ G N+TC + T I W ++ + + + L
Sbjct: 240 VTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFEN 299
Query: 141 AVTSDSGN-YTC-APSSSDGASVVVHV 165
GN YTC + ++ V
Sbjct: 300 VTEEYIGNTYTCRGHNYYFDKTLTTTV 326
Score = 40.6 bits (94), Expect = 2e-04
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 7/105 (6%)
Query: 67 LNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV 126
+ G G + C D + NVVN+ + G
Sbjct: 24 SKWLNPSCMFGGTMNDMAALGEPFSAKCPP--IEDSLLSHRYNDKDNVVNWEKIGKTRRP 81
Query: 127 TEKQTRTSRLVISKAVTSDSGN-YTCAPSSSDG----ASVVVHVL 166
++ + L I+ ++DS Y C ++ +G V H+
Sbjct: 82 LNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIR 126
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 63.0 bits (153), Expect = 2e-12
Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 32/168 (19%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNV------------- 69
R + + ++ L+I D G Y ++ L+
Sbjct: 49 RVKTGVTG--EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRL 106
Query: 70 ------VISKAKIIGN--SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRG 121
++A+++G + I+ G +NLTC V P P + W + + +
Sbjct: 107 KQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP--EVSWLKNEKALAQTDHC 164
Query: 122 GISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
+ + RT+ I+ T+DSG Y + G + V V
Sbjct: 165 NL---KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 46.0 bits (109), Expect = 1e-06
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
I L V + + W + + YS R V T L I++ +D
Sbjct: 17 AEGIQLYSFVTYYVEDLK-VNWSHNGSAIRYSDR----VKTGVTGEQIWLQINEPTPNDK 71
Query: 147 GNYTCAPSSSDGASVVVHVLNGKKFNK 173
G Y L+G+ +++
Sbjct: 72 GKYVMELFDGKTGHQKTVDLSGQAYDE 98
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 62.2 bits (151), Expect = 2e-12
Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 21/135 (15%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
+L I +++ DSG Y+CQ + S L V S ++ S + G + L C
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVNE-SEPVYLEVF-SDWLLLQASAEVVMEGQPLFLRCHG 109
Query: 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA---- 152
D I +Y+ + Y + I+ A DSG Y C
Sbjct: 110 WRNWDVYKVI-YYKDGEALKYWYENHN------------ISITNATVEDSGTYYCTGKVW 156
Query: 153 --PSSSDGASVVVHV 165
S+ ++ V
Sbjct: 157 QLDYESEPLNITVIK 171
Score = 41.4 bits (97), Expect = 5e-05
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 17/97 (17%)
Query: 70 VISKAKIIGN-SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTE 128
V K K+ N I G ++ LTC + S W+ ++
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSS-TKWFHNGSLS------------- 46
Query: 129 KQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHV 165
+ S L I A DSG Y C + S V++
Sbjct: 47 -EETNSSLNIVNAKFEDSGEYKCQHQQVNE-SEPVYL 81
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 62.6 bits (152), Expect = 2e-12
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 13/160 (8%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVISKA 74
++ DG+ + + + +D G Y C +S L + + +
Sbjct: 50 VSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD 109
Query: 75 KIIGN-SELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTE-KQT 131
+ + G L C + P+P + W + ++ + + +
Sbjct: 110 DFRVEPKDTRVAKGETALLECGPPKGIPEP--TLIWIKDGVPLDDLKAMSFGASSRVRIV 167
Query: 132 RTSRLVISKAVTSDSGNYTCAPSSSDG------ASVVVHV 165
L+IS D GNY C + G A ++V V
Sbjct: 168 DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207
Score = 51.0 bits (122), Expect = 3e-08
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
++L +K L C V P+P I W++ V+ +++ V + +
Sbjct: 17 TDLVVKKNEPATLNCKVEGKPEP--TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 140 KAVTSDSGNYTCAPSSSDG------ASVVVHVL 166
D G Y C + G AS+ + VL
Sbjct: 75 GKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 62.2 bits (151), Expect = 3e-12
Identities = 23/159 (14%), Positives = 46/159 (28%), Gaps = 38/159 (23%)
Query: 31 DGSDEWTLKIASSQLRDSGTYEC----------------QVSTEPKISIGYKLNVVISKA 74
+ L + ++D+G Y C V P+ V SK
Sbjct: 60 PNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKL 119
Query: 75 KIIGN-SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRT 133
+I + + GS + L CV + +P P W++ + + +
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVAVGSPIP--HYQWFKNELPLTHETKK------------ 165
Query: 134 SRLVISKAVTSDSGNYTCAPSSSDG------ASVVVHVL 166
++ G Y C + +++ L
Sbjct: 166 -LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 203
Score = 42.9 bits (101), Expect = 2e-05
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 19/91 (20%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ +G + L C P W++ + TS L+ +
Sbjct: 26 ESKAVLAGQFVKLCCRATGHPFV--QYQWFKMNKEI-------------PNGNTSELIFN 70
Query: 140 KAVTSDSGNYTCAPSSSDG----ASVVVHVL 166
D+G Y C +++ + V
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVC 101
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 62.1 bits (151), Expect = 3e-12
Identities = 36/181 (19%), Positives = 52/181 (28%), Gaps = 34/181 (18%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKI-ASSQLRDSGTYECQVSTE- 58
+ W + G R+T L G L+I RD YEC
Sbjct: 38 IVWRKN--------GKKVSGTQSRYTVLEQPGG-ISILRIEPVRAGRDDAPYECVAENGV 88
Query: 59 -PKISIGYKLNVVISKAK-------IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR 110
+S L + G I+ G + +TC + P P IYW +
Sbjct: 89 GDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTP--NIYWIK 146
Query: 111 GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPS------SSDGASVVVH 164
V+ S + L I + D G Y C S ++ V
Sbjct: 147 NQTKVDMSNP-------RYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK 199
Query: 165 V 165
V
Sbjct: 200 V 200
Score = 39.8 bits (93), Expect = 2e-04
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
++ G + C DPP I W + V+ +Q +V+ + + +
Sbjct: 18 VRVGGVASFYCAA--RGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGISILRIEPVRAG 74
Query: 144 SDSGNYTCAPSSSDGASV 161
D Y C + G +V
Sbjct: 75 RDDAPYECVAENGVGDAV 92
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 63.2 bits (154), Expect = 3e-12
Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 25/176 (14%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP- 59
V W R+ G + L++ G L IAS D+ Y+ + + +
Sbjct: 36 VKWYRQ--------GKEIIADGLKYRIQEFKG-GYHQLIIASVTDDDATVYQVRATNQGG 86
Query: 60 KISIGYKLNVVISKAKII------GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN 113
+S L V + AKI G ++ G +++ + P I W +G +
Sbjct: 87 SVSGTASLEVEV-PAKIHLPKTLEGMGAVHALRGEVVSIKIPF--SGKPDPVITWQKGQD 143
Query: 114 VVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
+++ + V ++ TS + + D+G Y + G +V + V
Sbjct: 144 LIDNNGH---YQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 49.4 bits (118), Expect = 2e-07
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 7/108 (6%)
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141
L ++ S+ L C V P P + WYR + G + E + +L+I+
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPI--VKWYRQGKEIIAD--GLKYRIQEFKGGYHQLIIASV 69
Query: 142 VTSDSGNYTCAPSSSDG---ASVVVHVLNGKKFNKLSSLRGRVGITLK 186
D+ Y ++ G + + V K + +L G +
Sbjct: 70 TDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 62.8 bits (152), Expect = 4e-12
Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 12/141 (8%)
Query: 36 WTLKIASSQLRDSGTYECQVS--TEPKISIGYKLNVVISKAKI--IGNSELYIKSGSDIN 91
+ + S + + +Y C+ + S Y + + + + + ++ G +I
Sbjct: 141 YDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENIT 200
Query: 92 LTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT-RTSRLVISKAVTSDSGNYT 150
L C+V + W + + S L I A DSG YT
Sbjct: 201 LMCIV--IGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYT 258
Query: 151 CAPSSSDG-----ASVVVHVL 166
C + S ++ + V+
Sbjct: 259 CNVTESVNDHQDEKAINITVV 279
Score = 46.2 bits (109), Expect = 2e-06
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 21/103 (20%)
Query: 69 VVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTE 128
+V++ EL + S LTC + + W R + +
Sbjct: 1 LVVTPPG----PELVLNVSSTFVLTCSG------SAPVVWERMSQEPPQE-----MAKAQ 45
Query: 129 KQTRTSRLVISKAVTSDSGNYTCAPSSSDG------ASVVVHV 165
T +S L ++ D+G Y C + S G + + V
Sbjct: 46 DGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFV 88
Score = 45.8 bits (108), Expect = 3e-06
Identities = 21/157 (13%), Positives = 41/157 (26%), Gaps = 32/157 (20%)
Query: 30 SDGSDEWTLKIASSQLRDSGTYECQV--------STEPKISIGYKLNVVISKAKIIGNSE 81
DG+ L + + D+G Y C ++ I V
Sbjct: 45 QDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELF 104
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYR--GANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+++ ++I + C V DP + + G +
Sbjct: 105 IFLTEITEITIPCRV---TDPQLVVTLHEKKGDVALPVPYDHQRGFSG------------ 149
Query: 140 KAVTSDSGNYTCAPSSSDG----ASVVVHVLNGKKFN 172
+ +Y C + D + V+ L N
Sbjct: 150 ---IFEDRSYICKTTIGDREVDSDAYYVYRLQVSSIN 183
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 61.1 bits (148), Expect = 4e-12
Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 40/176 (22%)
Query: 1 VSWIRKRDLHILTV---GILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57
+ W + D + T+ + L +G+ LKI + D Y+ +
Sbjct: 33 IKWEKTSDKKKIAQFRKEKETFKEKDTYK-LFKNGT----LKIKHLKTDDQDIYKVSIYD 87
Query: 58 EP---KISIGYKLNV--VISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA 112
+ + L + +SK KI + + LTC V+ DP + Y+
Sbjct: 88 TKGKNVLEKIFDLKIQERVSKPKI-------SWTCINTTLTCEVMNGTDPE--LNLYQDG 138
Query: 113 NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA---PSSSDGASVVVHV 165
+ SQ R++ K TS S + C S + + V
Sbjct: 139 KHLKLSQ---------------RVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
Score = 41.4 bits (97), Expect = 5e-05
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN--VVNYSQRGGISVVT---EKQTRTSR 135
E + G DINL + D I W + ++ + ++ + K +
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67
Query: 136 LVISKAVTSDSGNYTCAPSSSDGASVVVHVLN 167
L I T D Y + + G +V+ + +
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFD 99
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 61.3 bits (149), Expect = 5e-12
Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 11/136 (8%)
Query: 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAK----- 75
D + L IAS D+ Y+ + + + +S L V +
Sbjct: 48 DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKT 107
Query: 76 IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSR 135
+ G ++ G +++ PDP I W +G ++++ + V ++ TS
Sbjct: 108 LEGMGAVHALRGEVVSIKIPFSGKPDP--VITWQKGQDLIDNNGH---YQVIVTRSFTSL 162
Query: 136 LVISKAVTSDSGNYTC 151
+ + D+G Y
Sbjct: 163 VFPNGVERKDAGFYVV 178
Score = 45.9 bits (109), Expect = 2e-06
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 13/117 (11%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
L ++ S+ L C V P P + WYR + + E + +L+I+
Sbjct: 12 RNLNVRYQSNATLVCKVTGHPKP--IVKWYRQGKEIIADGLKYR--IQEFKGGYHQLIIA 67
Query: 140 KAVTSDSGNYTCAPSSSDG-----ASVVVHV---LNGKKF-NKLSSLRGRVGITLKF 187
D+ Y ++ G AS+ V V ++ K + ++ G +
Sbjct: 68 SVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Score = 30.5 bits (69), Expect = 0.27
Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
N+ + + S + + +D+G Y
Sbjct: 146 DNNGHYQ-VIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 60.3 bits (146), Expect = 8e-12
Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 30/156 (19%)
Query: 1 VSWIRKRDLHILTV---GILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57
++W+ + IL G T + + D ++ L+I + D G Y ++
Sbjct: 32 LTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTN-GALRIYNVSKEDRGDYYMRMLH 90
Query: 58 EPKISIGYKLNV--VISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV 115
E + + V ++SK I S+ LTC VLE D + Y+G +
Sbjct: 91 ETEDQWKITMEVYEMVSKPMI-------YWECSNATLTCEVLEGTDVE--LKLYQGKEHL 141
Query: 116 NYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
+ +S T+ + C
Sbjct: 142 RS---------------LRQKTMSYQWTNLRAPFKC 162
Score = 32.9 bits (75), Expect = 0.036
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 10/88 (11%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGAN--VVNYSQRGGISVVTEK-------QTRTSRLV 137
GS++ LT + + W N ++ Y G +V L
Sbjct: 14 GSNVTLTILKHPLASYQR-LTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 138 ISKAVTSDSGNYTCAPSSSDGASVVVHV 165
I D G+Y + +
Sbjct: 73 IYNVSKEDRGDYYMRMLHETEDQWKITM 100
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 60.8 bits (147), Expect = 9e-12
Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 22/148 (14%)
Query: 27 SLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKI---IGNSELY 83
++S+GS L ++D G Y ++ E + + + + +
Sbjct: 66 IIYSNGS----LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT 121
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+K + LTC + D + I W + + ++R +S S L I
Sbjct: 122 VKELDSVTLTC---LSNDIGANIQWLFNSQSLQLTERMTLSQ------NNSILRIDPIKR 172
Query: 144 SDSGNYTC------APSSSDGASVVVHV 165
D+G Y C + S+ + +
Sbjct: 173 EDAGEYQCEISNPVSVRRSNSIKLDIIF 200
Score = 41.2 bits (96), Expect = 6e-05
Identities = 13/96 (13%), Positives = 24/96 (25%), Gaps = 14/96 (14%)
Query: 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT----RTSR--- 135
+ +++ L L P WY+G + + + R
Sbjct: 10 QVAEDNNVLLLVHNL--PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67
Query: 136 -----LVISKAVTSDSGNYTCAPSSSDGASVVVHVL 166
L+ D G YT + + V
Sbjct: 68 YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVR 103
Score = 28.5 bits (63), Expect = 1.1
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNV 69
L+ T + + L+I + D+G Y+C++S + S KL++
Sbjct: 150 LQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 60.9 bits (147), Expect = 9e-12
Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 11/160 (6%)
Query: 1 VSWIRKRDLHILTVGILTY------TNDLRFTSLHSDGSD-EWTLKIASSQLRDSGTYEC 53
++W R + + V T + L F + + +L++ ++ D G+Y C
Sbjct: 36 LTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTC 95
Query: 54 QVSTEPK--ISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRG 111
T P+ S+ L V+ ++ + CV PP+ I W+
Sbjct: 96 LFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGR-PPAQITWHSD 154
Query: 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
+ + + ++ T TS ++ + D TC
Sbjct: 155 LGGMPQTSQ-VPGFLSGTVTVTSLWILVPSSQVDGKQVTC 193
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 62.0 bits (150), Expect = 1e-11
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 3/122 (2%)
Query: 47 DSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFI 106
C E + +++ +L++K G + + C + + +
Sbjct: 202 FGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVH-VNHGFGL 260
Query: 107 YWYRGANVVNYSQRGGISVVTEKQT--RTSRLVISKAVTSDSGNYTCAPSSSDGASVVVH 164
W + +S + +T R +S +D+G YTC+ S S +V
Sbjct: 261 TWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVT 320
Query: 165 VL 166
++
Sbjct: 321 IV 322
Score = 61.2 bits (148), Expect = 2e-11
Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 11/131 (8%)
Query: 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCV 95
K S + S +Y E +G L S + + + + + I L +
Sbjct: 15 INHKNNDSSVGKSSSYPMVS--ESPEDLGCALRPQSSGT-VYEAAAVEVDVSASITLQVL 71
Query: 96 VLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155
V + W + +N + +VI K + +G Y S
Sbjct: 72 VDAPGNI--SCLWVFKHSSLNCQPH-----FDLQNRGVVSMVILKMTETQAGEYLLFIQS 124
Query: 156 SDG-ASVVVHV 165
+++ V
Sbjct: 125 EATNYTILFTV 135
Score = 58.9 bits (142), Expect = 1e-10
Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 19/135 (14%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIG---NSELYIKSGSDINLT 93
++S D+G Y C S P S + +V K I + + I + +
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPSQSA--LVTIV-EKGFINATNSSEDYEIDQYEEFCFS 347
Query: 94 CVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153
P W Q+G + + + G Y
Sbjct: 348 VRF--KAYPQIRCTWTFSRKSFPCEQKGLDNGYS--------ISKFCNHKHQPGEYIFHA 397
Query: 154 SSSDG---ASVVVHV 165
+ D +++
Sbjct: 398 ENDDAQFTKMFTLNI 412
Score = 50.8 bits (121), Expect = 7e-08
Identities = 21/165 (12%), Positives = 42/165 (25%), Gaps = 15/165 (9%)
Query: 27 SLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIK 85
++ I +G Y + +E +I + +++ + +
Sbjct: 94 HFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKM 153
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
D L C+ P+P + W E+ +
Sbjct: 154 ENQDA-LVCISESVPEP--IVEWVL--------CDSQGESCKEESPAVVKKEEKVLHELF 202
Query: 146 SGNYTCAPSSSDG---ASVVVHVLNGKKFNKLSSLRGRVGITLKF 187
+ C + G + LN L L +VG L
Sbjct: 203 GTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWI 247
Score = 33.1 bits (75), Expect = 0.057
Identities = 3/43 (6%), Positives = 10/43 (23%)
Query: 16 ILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
+ F + +++ + G Y +
Sbjct: 358 CTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAEND 400
Score = 29.3 bits (65), Expect = 1.0
Identities = 4/50 (8%), Positives = 16/50 (32%)
Query: 138 ISKAVTSDSGNYTCAPSSSDGASVVVHVLNGKKFNKLSSLRGRVGITLKF 187
+ + S +Y S + + + + +++ V ++
Sbjct: 19 NNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITL 68
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 60.8 bits (147), Expect = 1e-11
Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 14/148 (9%)
Query: 26 TSLHSDGSDE--WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELY 83
L D L+I +L+D+G Y C +S + V KI +
Sbjct: 68 ARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVV 127
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR--TSRLVISKA 141
S+ LTC P + W + V + + E++ TS L I+
Sbjct: 128 DPVTSEHELTCQAEGYPKAE--VIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRIN-- 183
Query: 142 VTSDSGNYTC-----APSSSDGASVVVH 164
T+ + + C P + A +V+
Sbjct: 184 -TTTNEIFYCTFRRLDPEENHTAELVIP 210
Score = 34.2 bits (78), Expect = 0.017
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 21/99 (21%)
Query: 87 GSDINLTCVVLETPDPPS---FIYWYRGANVVNYSQ-------------RGGISVVTEKQ 130
GS++ + C +YW + R ++ ++
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 131 TR-TSRLVISKAVTSDSGNYTC----APSSSDGASVVVH 164
+ + L I+ D+G Y C + +V V+
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVN 114
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 60.6 bits (146), Expect = 1e-11
Identities = 16/117 (13%), Positives = 42/117 (35%), Gaps = 2/117 (1%)
Query: 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCV 95
TL + + +Y C + E K+ G ++ + + +++G I + C
Sbjct: 55 TLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCS 114
Query: 96 VLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
V + P I +G +++ + + +T++ + + + C
Sbjct: 115 VADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVC 171
Score = 42.1 bits (98), Expect = 3e-05
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 12/95 (12%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
S + G ++LTC P W ++ + TS L ++
Sbjct: 9 SRYLAQIGDSVSLTCSTTGCESPF--FSWRTQ-------IDSPLNGKVTNEGTTSTLTMN 59
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHVLNGKKF 171
+ +Y C + + V + + K
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKD 94
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 61.3 bits (148), Expect = 1e-11
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 16/135 (11%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVS-TEPKISIGYKLNVVISKAKIIGNSEL----YIKSG 87
+ L +++ DSG Y C V + + I V ++ + N++ +
Sbjct: 59 QHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVA 118
Query: 88 SDINLTCVVLETP----DPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
D L C +E + + WY+ + RL++
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI-------HFSGVKDRLIVMNVAE 171
Query: 144 SDSGNYTCAPSSSDG 158
GNYTC S +
Sbjct: 172 KHRGNYTCHASYTYL 186
Score = 57.4 bits (138), Expect = 3e-10
Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 27/158 (17%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVS-----TEPKISIGYKLNVVISKAKII------GNSE 81
+ L + + + G Y C S + I+ + + N
Sbjct: 159 GVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANET 218
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGIS--------VVTEKQTRT 133
+ + GS I L C V T YW +V++ + T
Sbjct: 219 MEVDLGSQIQLICNV--TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLI 276
Query: 134 SRLVISKAVTSD-SGNYTCAPSSSDG-----ASVVVHV 165
+ L IS+ + +TC ++ G ++ V
Sbjct: 277 TVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314
Score = 47.8 bits (113), Expect = 7e-07
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 8/78 (10%)
Query: 92 LTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
C + + I WY+ + S + K+ L A DSG+Y C
Sbjct: 25 RPCPLNPNEHKGT-ITWYKDDSKTPVSTEQASRIHQHKEK----LWFVPAKVEDSGHYYC 79
Query: 152 APSSSDG---ASVVVHVL 166
+S + +
Sbjct: 80 VVRNSSYCLRIKISAKFV 97
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 60.2 bits (145), Expect = 2e-11
Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 25/166 (15%)
Query: 1 VSWIRKRDLHILTVGILTYTNDL--------RFTSLHSDGSDEWTLKIASSQLRDSGTYE 52
V W R ++ + T D RF L +L I +++ D+G+Y
Sbjct: 39 VYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYF 98
Query: 53 CQVSTEPKISIGYK-----LNVVISKAKIIGNSELYIKSGSDINLTCVVLETPD--PPSF 105
+V + Y+ L V K + ++SG L+C + + + PP
Sbjct: 99 FRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLT 158
Query: 106 IYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
W +S + + TR+S L ++ N TC
Sbjct: 159 FSWT----------GNALSPLDPETTRSSELTLTPRPEDHGTNLTC 194
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 61.2 bits (148), Expect = 2e-11
Identities = 24/170 (14%), Positives = 48/170 (28%), Gaps = 20/170 (11%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS-----------TEPKISIGYKLN 68
+ R + + + D G Y C V+ E ++ L+
Sbjct: 44 EDSPRLEVESKGN--KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALS 101
Query: 69 VVISKAKIIGNSELYIK---SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISV 125
+ SEL ++ G + + + + + + + +
Sbjct: 102 HEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAK--VNYIFNEKEIFEGPKYKMHI 159
Query: 126 VTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHVLNGKKFNKLS 175
++ T + + K D G YT + VL G F KL
Sbjct: 160 --DRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 207
Score = 60.8 bits (147), Expect = 2e-11
Identities = 17/151 (11%), Positives = 43/151 (28%), Gaps = 26/151 (17%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS-------------------TEPK 60
++ + + + Q D GTY Q+ + +
Sbjct: 150 FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKE 209
Query: 61 ISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR 120
+ + + + ++ L C V + I WY+ ++ ++
Sbjct: 210 AEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIK-KETHIVWYKDEREISVDEK 268
Query: 121 GGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
+ + L+I++ D+G Y
Sbjct: 269 ------HDFKDGICTLLITEFSKKDAGIYEV 293
Score = 28.8 bits (64), Expect = 1.3
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
+ H TL I +D+G YE + +
Sbjct: 263 ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD 298
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 59.8 bits (145), Expect = 2e-11
Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 18/158 (11%)
Query: 24 RFTSLHSDGSDEWTLKIASSQL-RDSGTYEC-------QVSTEPKISIGYKLNVVISKAK 75
RF + D L+I + RD YEC ++S ++++ + +
Sbjct: 51 RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPT 110
Query: 76 IIGN-SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTS 134
I ++ + C PDP I W++ V+ S G ++ +
Sbjct: 111 IDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDTSNNNGRIKQLRSESIGA 168
Query: 135 RLVISKAVTSDSGNYTCAPSSSDG------ASVVVHVL 166
L I ++ SD G Y C ++S G A++ V
Sbjct: 169 -LQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT 205
Score = 31.7 bits (72), Expect = 0.11
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
++W + + T N+ R L S+ L+I S+ D G YEC +
Sbjct: 140 ITWFKDFLP------VDTSNNNGRIKQLRSESIG--ALQIEQSEESDQGKYECVAT 187
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 60.5 bits (146), Expect = 3e-11
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 18/141 (12%)
Query: 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELY---IKSGSDINL 92
L + + DSGTY C + +L V Y + + L
Sbjct: 82 ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVF-ENTDAFLPFISYPQILTLSTSGVL 140
Query: 93 TCVVLE---TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNY 149
C L I WY+ + +++ +SV T+ L++ D+G Y
Sbjct: 141 VCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR-----GTTHLLVHDVALEDAGYY 195
Query: 150 TCAPSSSDG-----ASVVVHV 165
C + + + + +
Sbjct: 196 RCVLTFAHEGQQYNITRSIEL 216
Score = 59.3 bits (143), Expect = 9e-11
Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 26/167 (15%)
Query: 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS-----TEPKISIGYKLNVVISKAK 75
++ +F S+ L + L D+G Y C ++ + I+ +L + K +
Sbjct: 169 DNEKFLSVRGTT----HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE 224
Query: 76 -----IIGNSELYIKSGSDINLTCVVLETP--DPPSFIYWYRGANVVNYSQRGGISVVTE 128
I + GS + + C V + ++W + + GG
Sbjct: 225 TIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGP 284
Query: 129 KQ--------TRTSRLVISKAVTSDSG-NYTCAPSSSDG-ASVVVHV 165
+Q L+ D ++ C ++ ++ V
Sbjct: 285 RQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 45.4 bits (107), Expect = 4e-06
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 87 GSDINLTCVVLETP-----DPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141
G + L C + P + W++ + + + L + A
Sbjct: 33 GEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGA----LWLLPA 88
Query: 142 VTSDSGNYTCAPSSSDG---ASVVVHVL 166
+ DSG Y C ++ S+ + V
Sbjct: 89 LQEDSGTYVCTTRNASYCDKMSIELRVF 116
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 58.2 bits (141), Expect = 5e-11
Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 12/130 (9%)
Query: 27 SLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVIS---KAKIIGNSEL 82
+ SDG TL + + + D G Y C + E ++ KL + + +
Sbjct: 55 KMSSDG-RTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKY 113
Query: 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAV 142
Y GS + L + + P P + W+ G ++ S+ + E + LV+
Sbjct: 114 YGAVGSTLRLHVMYIGRPVP--AMTWFHGQKLLQNSEN----ITIENTEHYTHLVMKNVQ 167
Query: 143 T-SDSGNYTC 151
+ +G Y
Sbjct: 168 RKTHAGKYKV 177
Score = 49.7 bits (119), Expect = 7e-08
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
++ K G L+C ++ P P I WYR + S++ + ++ RT L +
Sbjct: 15 KDVTTKLGEAAQLSCQIVGRPLP--DIKWYRFGKELIQSRK--YKMSSDG--RTHTLTVM 68
Query: 140 KAVTSDSGNYTCAPSSSDG-----ASVVVHV 165
D G YTC ++ G + +++
Sbjct: 69 TEEQEDEGVYTCIATNEVGEVETSSKLLLQA 99
Score = 26.2 bits (58), Expect = 6.2
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 30 SDGSDEWTLKIASSQLR-DSGTYECQVS 56
+ L + + Q + +G Y+ Q+S
Sbjct: 153 ENTEHYTHLVMKNVQRKTHAGKYKVQLS 180
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 57.3 bits (138), Expect = 1e-10
Identities = 29/177 (16%), Positives = 67/177 (37%), Gaps = 27/177 (15%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTS-----LHSDGSDEWTLKIASSQLRDSGTYECQV 55
++W + + + + + + + ++L++++ ++ D+G+Y Q+
Sbjct: 31 ITW-LFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQI 89
Query: 56 STEPKISIG-YKLNVV--ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGA 112
ST+ + Y L ++ + ++ +S+L+ +++LTC V E D W
Sbjct: 90 STKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSV-EDADDNVSFRWEALG 148
Query: 113 NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA---PSSSDGASVVVHVL 166
N ++ +S S +YTC S+ SV L
Sbjct: 149 NTLSSQPNLTVSWDPR--------------ISSEQDYTCIAENAVSNLSFSVSAQKL 191
Score = 31.5 bits (71), Expect = 0.11
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 12/96 (12%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRG----ANVVNYSQRGGISVVTEKQ-------TRTSR 135
G + L + +FI W A +V + + VT + T++
Sbjct: 13 GESVTLPLEF-PAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 136 LVISKAVTSDSGNYTCAPSSSDGASVVVHVLNGKKF 171
L +S D+G+Y S+ A + + L +
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQ 107
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 55.0 bits (132), Expect = 2e-10
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 84 IKSGSDINLTCVVLETPDPPS-FIYWYRGANVVNYSQRGGISVVTEKQTR-----TSRLV 137
+ G I + V + W++G V S+ G + + R L
Sbjct: 16 VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELH 75
Query: 138 ISKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
I+ A + +G+Y C S+ D ++ + V
Sbjct: 76 ITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 31.5 bits (71), Expect = 0.050
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDE----WTLKIASSQLRDSGTYECQVS 56
V W + + + L+ S + L I +Q +G+Y C+VS
Sbjct: 39 VKWFKGKWVD------LSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVS 92
Query: 57 TEP-KISIGYKLNVV 70
T+ + L V
Sbjct: 93 TKDKFDCSNFNLTVH 107
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 56.1 bits (135), Expect = 4e-10
Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 26/151 (17%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV-----STEPKISIGYKLNVVISKA 74
++ + + + Q D GTY Q+ + + + + + K
Sbjct: 45 FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKE 104
Query: 75 KIIGNSELYIKS--------------GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR 120
E K ++ L C V + I WY+ ++ ++
Sbjct: 105 AEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIK-KETHIVWYKDEREISVDEK 163
Query: 121 GGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
+ + L+I++ D+G Y
Sbjct: 164 ------HDFKDGICTLLITEFSKKDAGIYEV 188
Score = 42.6 bits (100), Expect = 2e-05
Identities = 5/60 (8%), Positives = 15/60 (25%), Gaps = 4/60 (6%)
Query: 92 LTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
+ + + + + + + + + + K D G YT
Sbjct: 23 WMQAEKLSGNAK--VNYIFNEKEIFEGPKYKMHIDRNTGIIE--MFMEKLQDEDEGTYTF 78
Score = 31.8 bits (72), Expect = 0.095
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
+ H TL I +D+G YE + +
Sbjct: 158 ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD 193
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 56.3 bits (135), Expect = 7e-10
Identities = 25/173 (14%), Positives = 53/173 (30%), Gaps = 25/173 (14%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
WI TV + L S G + + C +
Sbjct: 190 AGWILTELEQSATVM--------KSGGLPSLG----LTLANVTSDLNRKNVTCWAEND-- 235
Query: 61 ISIGY-KLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQ 119
+G +++V ++ + + V P P + W +V+N +
Sbjct: 236 --VGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPS--LRWLFNGSVLNETS 291
Query: 120 R---GGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
+ + R L +++ ++GNYT ++ G AS++ +
Sbjct: 292 FIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344
Score = 40.9 bits (95), Expect = 1e-04
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ G D+ L C V W + +V+ + L ++
Sbjct: 166 PNASVDVGDDVLLRCQVEGRGLEQ--AGWILTELEQS------ATVMKSGGLPSLGLTLA 217
Query: 140 KAVT-SDSGNYTCAPSSSDG---ASVVVHV 165
+ + N TC + G SV V+V
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 54.8 bits (132), Expect = 1e-09
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 19/139 (13%)
Query: 37 TLKIASSQLRDSGTYECQVSTE--PKISIGYKLNVVISKAKIIGN-SELYIKSGSDINLT 93
+ D G Y C +S L V I + N S++ + G +
Sbjct: 73 RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVME 132
Query: 94 CVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152
C P+P I W + + ++ +T R +L+I+ SD+G Y C
Sbjct: 133 CQPPRGHPEP--TISWKKDGSPLDDKDE----RIT---IRGGKLMITYTRKSDAGKYVCV 183
Query: 153 PSSSDG------ASVVVHV 165
++ G A + V
Sbjct: 184 GTNMVGERESEVAELTVLE 202
Score = 44.4 bits (105), Expect = 5e-06
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQ---RGGISVVTEKQTRTSRL 136
S+L + G L C P P I WY+G V + R ++ R+
Sbjct: 17 SDLIVSKGEPATLNCKAEGRPTP--TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRI 74
Query: 137 VISKAVTSDSGNYTCAPSSSDGASV 161
V + D G Y C + G +V
Sbjct: 75 VHGRKSRPDEGVYVCVARNYLGEAV 99
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 54.2 bits (130), Expect = 1e-09
Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 28/169 (16%)
Query: 1 VSWIR-KRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59
V W R + + + F + ++G LKI + DSGTY V +
Sbjct: 30 VRWERGSTLVAEFKRKMKPFLKSGAFE-ILANGD----LKIKNLTRDDSGTYNVTVYSTN 84
Query: 60 KISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQ 119
I K + + +++ +Y S+ LTC VLE D + Y+G +
Sbjct: 85 GTRILNK-ALDLRILEMVSKPMIYW-ECSNATLTCEVLEGTDVE--LKLYQGKEHLRSL- 139
Query: 120 RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA---PSSSDGASVVVHV 165
+ +S T+ + C S + VV+
Sbjct: 140 --------------RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 42.3 bits (99), Expect = 2e-05
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV---TEKQTRTSR 135
+ ++ G INL + D + W RG+ +V +R + +
Sbjct: 3 SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62
Query: 136 LVISKAVTSDSGNYTCAPSSSDGASVVVHVLN 167
L I DSG Y S++G ++ L+
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALD 94
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 53.0 bits (127), Expect = 1e-09
Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 70 VISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK 129
V I + G + C + TP PP I W NV+ G +V T
Sbjct: 11 VNGPPIISSTQTQHALHGEKGQIKCFIRSTP-PPDRIAWSWKENVLESGTSGRYTVETIS 69
Query: 130 QTR--TSRLVISKAVTSD-SGNYTC 151
S L IS V +D Y C
Sbjct: 70 TEEGVISTLTISNIVRADFQTIYNC 94
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 54.4 bits (131), Expect = 2e-09
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 11/118 (9%)
Query: 49 GTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYW 108
TY S+ + K+ G +Y G+ +N+TC V P + I W
Sbjct: 1 ATYAA-ASSALVPR-----GSHMYAPKLQGPVAVYTWEGNQVNITCEV--FAYPSATISW 52
Query: 109 YRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC-APSSSDGASVVVHV 165
+R ++ S I + S L ++ +D GNY C A + S+ +
Sbjct: 53 FRDGQLLPSSNYSNIKIYNTPSA--SYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
Score = 33.6 bits (77), Expect = 0.025
Identities = 18/104 (17%), Positives = 27/104 (25%), Gaps = 35/104 (33%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
+SW R L L +N ++ + L++ D G Y C
Sbjct: 50 ISWFRDGQL-------LPSSNYSNIKIYNTPSAS--YLEVTPDSENDFGNYNCTAVNR-- 98
Query: 61 ISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPS 104
IG + L +TP PS
Sbjct: 99 ----------------IGQES------LEFILV--QADTPSSPS 118
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 51.9 bits (125), Expect = 2e-09
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
S++ I G + + C P P + W G ++ ++G + T L+I
Sbjct: 13 SDISIDEGKVLTVACAFTGEPTP--EVTWSCGGRKIHSQEQGRFHIENTDDLTT--LIIM 68
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHV 165
D G YT + + G A+V +H+
Sbjct: 69 DVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 31.9 bits (73), Expect = 0.033
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
+ RF ++D D TL I Q +D G Y +
Sbjct: 46 IHSQEQGRFHIENTD--DLTTLIIMDVQKQDGGLYTLSLG 83
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 53.7 bits (128), Expect = 3e-09
Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 36/166 (21%)
Query: 28 LHSDGSDEWTLKIASSQLRDSGTYECQVSTE---------------------------PK 60
+ D+ + S+ G Y+C+ S K
Sbjct: 41 IGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKK 100
Query: 61 ISIGYKLNVVISKAKIIGNSELYIK-SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQ 119
+ + I + + SG+ + LTC P S I W + +
Sbjct: 101 DDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ----YPGSEILWQHNDKNIGGDE 156
Query: 120 RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHV 165
E + + SG Y C P S ++
Sbjct: 157 DDKNIGSDEDHL----SLKEFSELEQSGYYVCYPRGSKPEDANFYL 198
Score = 34.5 bits (78), Expect = 0.012
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 16/84 (19%)
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
+ + LTC + I W++ ++ + + +
Sbjct: 16 QEDGSVLLTC---DAEAKN--ITWFKDGKMIGFLTE-----------DKKKWNLGSNAKD 59
Query: 145 DSGNYTCAPSSSDGASVVVHVLNG 168
G Y C S + + V+ G
Sbjct: 60 PRGMYQCKGSQNKSKPLQVYYRMG 83
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 51.9 bits (125), Expect = 3e-09
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ +++G + L V T P W + + S+ + V + S+L I
Sbjct: 15 EDQKVRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEH--MKVENSENG--SKLTIL 68
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
A G YT + G A V + V+
Sbjct: 69 AARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
Score = 33.5 bits (77), Expect = 0.014
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 28/86 (32%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGN 79
+S+ L I +++ G Y V N + G+
Sbjct: 49 QESEHMKVENSENGS--KLTILAARQEHCGCYTLLVE-----------NKL-------GS 88
Query: 80 SELYIKSGSDINLTCVVLETPDPPSF 105
+ + +NLT V++ PDPP+
Sbjct: 89 RQ------AQVNLT--VVDKPDPPAG 106
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 53.7 bits (128), Expect = 4e-09
Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 25/171 (14%)
Query: 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNVVI--SKAKI 76
+D R S + L +A +Q+ D Y C V +LNV ++
Sbjct: 62 HDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEV 121
Query: 77 IGNSELY--IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR-- 132
N ++ + TC +P I WYR + +T
Sbjct: 122 SPNKGTLSVMEDSAQEIATCNS-RNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVRE 180
Query: 133 -------TSRLVISKAVTSDSGNYTCAPSSSDGASVVVHVLNGKKFNKLSS 176
TS L + ++ C + L + +L S
Sbjct: 181 ASGLLSLTSTLYLRLRKDDRDASFHC---------AAHYSLPEGRHGRLDS 222
Score = 36.3 bits (83), Expect = 0.004
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 21/100 (21%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYR----GANVVNYSQRGGISVVTEKQTR---------- 132
G + L C + W+ GA S S +
Sbjct: 15 GKSVILDCTP-TGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 133 --TSRLVISKAVTSDSGNYTC----APSSSDGASVVVHVL 166
RLV+++A D +Y C + + A+ ++V
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF 113
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 51.7 bits (123), Expect = 5e-09
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVN----YSQRGGISVVTEKQTRTS 134
+ + + G + L C + W ++ ++ +E + S
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 135 RLVISKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
L I SD G YTCA SS S V V
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108
Score = 27.4 bits (60), Expect = 2.1
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 37 TLKIASSQLRDSGTYECQVSTEP 59
TL I D G Y C S+
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGL 97
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 51.2 bits (122), Expect = 6e-09
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 24/124 (19%)
Query: 51 YECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR 110
+ C P+I++ + I GSD++ TC + D P W
Sbjct: 3 FVCDDFPXPQITVQPETQSAIX--------------GSDVSFTCSAASSSDSPMTFAWXX 48
Query: 111 GANVVNYSQRGGISVVTEKQTR----TSRLVISKAVTSDSGNYTCAPSSSDG------AS 160
+ ++ + + + T+ L + + G Y C S+ G A
Sbjct: 49 DNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAX 108
Query: 161 VVVH 164
+ ++
Sbjct: 109 LTIN 112
Score = 26.2 bits (57), Expect = 4.2
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 37 TLKIASSQLRDSGTYECQVSTE 58
L++ + + G Y+C +S
Sbjct: 77 ILRLRNVEFTSEGXYQCVISNH 98
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 51.1 bits (122), Expect = 6e-09
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTR 132
I + + G I L C + T + + W + + + G + + R
Sbjct: 5 GTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR 64
Query: 133 TSR-----LVISKAVTSDSGNYTCA----PSSSDGASVVVHVL 166
+ L + +D+G Y C P + + + VL
Sbjct: 65 VAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107
Score = 38.4 bits (89), Expect = 3e-04
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
V+W ++ L + L + F + G L + S + D+G Y C T P
Sbjct: 37 VNWEQQDQLLAICNADLGWHISPSFKDRVAPGPG-LGLTLQSLTVNDTGEYFCIYHTYPD 95
Query: 61 ISIG--YKLNVV 70
+ L V+
Sbjct: 96 GTYTGRIFLEVL 107
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 50.5 bits (121), Expect = 7e-09
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 6/85 (7%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT-RTSRLVISKAVTS 144
S + V P P + W+ ++N S+ + T L +
Sbjct: 15 SDHHWCIPFTVKGNPKP--ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM 72
Query: 145 DSGNYTCA---PSSSDGASVVVHVL 166
++G+YT D + H +
Sbjct: 73 NNGDYTLIAKNEYGKDEKQISAHFM 97
Score = 28.9 bits (65), Expect = 0.39
Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 16 ILTYTNDLRFTSLHSDGSD-EWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVV 70
IL + + ++ ++ L++ + ++G Y E K + +
Sbjct: 41 ILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 50.5 bits (121), Expect = 7e-09
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAV 142
+ + + + C P P + W + G + GG V + + L++ V
Sbjct: 20 VPAANTVKFRCPAGGNPMPT--MRWLKNGKEFKQEHRIGGYKVRNQHWS----LIMESVV 73
Query: 143 TSDSGNYTCAPSSSDG---ASVVVHVL 166
SD GNYTC + G + + V+
Sbjct: 74 PSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 31.3 bits (71), Expect = 0.057
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 29 HSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVV 70
+ + W+L + S D G Y C V E I+ Y L+VV
Sbjct: 58 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 50.8 bits (121), Expect = 1e-08
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 84 IKSGSDINLTCVVLETP--DPPSFIYWYRGANVVNYSQRGG-----ISVVTEKQTRTSRL 136
+K G DI V P+ I W++G + S+ G + + T +
Sbjct: 19 VKVGEDITFIAKVKAEDLLRKPT-IKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEM 77
Query: 137 VISKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
I KA + +GNY C + D S + V
Sbjct: 78 QIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 109
Score = 33.0 bits (75), Expect = 0.022
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWT--LKIASSQLRDSGTYECQVSTE 58
+ W + + + + + L+ S +T ++I ++ +G Y C+V+ +
Sbjct: 42 IKWFKGKWMDLASKA----GKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYK 97
Query: 59 P-KISIGYKLNVVISKAKIIGNSELYIKSG 87
S + L V N + SG
Sbjct: 98 DKFDSCSFDLE-VHESTGTTPNIDSGPSSG 126
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 50.1 bits (120), Expect = 1e-08
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ + LTC + D P WY+ V S+ +V + R RL++ +A
Sbjct: 22 FTTSERVVLTCEL-SRVDFP--ATWYKDGQKVEESEL----LVVKMDGRKHRLILPEAKV 74
Query: 144 SDSGNYTC-APSSSDGASVVVHV 165
DSG + C S V V
Sbjct: 75 QDSGEFECRTEGVSAFFGVTVQD 97
Score = 28.1 bits (63), Expect = 0.80
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 37 TLKIASSQLRDSGTYECQVSTE 58
L + ++++DSG +EC+
Sbjct: 66 RLILPEAKVQDSGEFECRTEGV 87
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 50.0 bits (120), Expect = 1e-08
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
G + L C V D + W++ + + + E + L+I A +D+
Sbjct: 22 GERVELECEV-SEDDAN--VKWFKNGEEIIPGPKSRYRIRVEGKKHI--LIIEGATKADA 76
Query: 147 GNYTC-APSSSDGASVVVHV 165
Y+ A + V +
Sbjct: 77 AEYSVMTTGGQSSAKLSVDL 96
Score = 28.4 bits (64), Expect = 0.54
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
+ R+ + +G + L I + D+ Y +
Sbjct: 47 IIPGPKSRYR-IRVEG-KKHILIIEGATKADAAEYSVMTTGG 86
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 51.1 bits (122), Expect = 1e-08
Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 31/130 (23%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNV--VISKAKIIGNSE 81
R GS L I + D YE + ++ + L V ++SK I
Sbjct: 52 RVYLDTVSGS----LTIYNLTSSDEDEYEMESPNI-TDTMKFFLYVLEMVSKPMI----- 101
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141
S+ LTC VLE D + Y+G + + +S
Sbjct: 102 --YWECSNATLTCEVLEGTDVE--LKLYQGKEHLRSL---------------RQKTMSYQ 142
Query: 142 VTSDSGNYTC 151
T+ + C
Sbjct: 143 WTNLRAPFKC 152
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 52.2 bits (124), Expect = 2e-08
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRT 133
A+ + L G + LTC +E D + ++W
Sbjct: 8 AQEVARGVLTSLPGDSVTLTCPGVEPEDNAT-VHWVLRKPAAGSHPS-------RWAGMG 59
Query: 134 SRLVISKAVTSDSGNYTCAPSSSDGASVVVHV 165
RL++ DSGNY+C + +V + V
Sbjct: 60 RRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLV 91
Score = 30.2 bits (67), Expect = 0.49
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
L + S QL DSG Y C + P ++ L V + + + N+ C
Sbjct: 61 RLLLRSVQLHDSGNYSCYRAGRPAGTV--HLLVDVPPEEP---QLSCFRKSPLSNVVCEW 115
Query: 97 LETPD---PPSFIYWYR 110
+ R
Sbjct: 116 GPRSTPSLTTKAVLLVR 132
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 49.3 bits (118), Expect = 2e-08
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ L ++ TC E P + W +G + S + E T L IS
Sbjct: 16 TNLQVEEKGTAVFTCKT-EHPAAT--VTWRKGLLELRASGK--HQPSQEGLTLR--LTIS 68
Query: 140 KAVTSDSGNYTC-APSSSDGASVVVH 164
+DS YTC + A ++V
Sbjct: 69 ALEKADSDTYTCDIGQAQSRAQLLVQ 94
Score = 26.9 bits (60), Expect = 1.9
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 37 TLKIASSQLRDSGTYECQV 55
L I++ + DS TY C +
Sbjct: 64 RLTISALEKADSDTYTCDI 82
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 49.4 bits (118), Expect = 3e-08
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 92 LTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
+ VV +PP ++W + S+ + E + L+ +K ++GNYT
Sbjct: 25 IEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL 82
Query: 152 APSSSDG---ASVVVHVL 166
+ G ++ H L
Sbjct: 83 IAKNPLGTANQTINGHFL 100
Score = 31.7 bits (72), Expect = 0.065
Identities = 5/40 (12%), Positives = 9/40 (22%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
L + + E L ++G Y
Sbjct: 46 LRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAK 85
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 49.3 bits (118), Expect = 3e-08
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
G+ L C + + P + W +G + R S+ + L I +D+
Sbjct: 23 GATATLQCEL--SKVAP--VEWKKGPETLRDGGR--YSLKQDGTRCE--LQIHDLSVADA 74
Query: 147 GNYTC-APSSSDGASVVVHVL 166
G Y+C A++ V L
Sbjct: 75 GEYSCMCGQERTSATLTVRAL 95
Score = 27.3 bits (61), Expect = 1.5
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 37 TLKIASSQLRDSGTYECQVSTE 58
L+I + D+G Y C E
Sbjct: 63 ELQIHDLSVADAGEYSCMCGQE 84
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 48.9 bits (117), Expect = 3e-08
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 4/78 (5%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
G + + V + W + + +K + L+ S V D
Sbjct: 23 GDRVEMAVEV-SEEGAQ--VMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDR 79
Query: 147 GNYTC-APSSSDGASVVV 163
G Y A ++V
Sbjct: 80 GRYQVITNGGQCEAELIV 97
Score = 28.1 bits (63), Expect = 0.85
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 37 TLKIASSQLRDSGTYECQVS 56
L + D G Y+ +
Sbjct: 68 ILIFSDVVQEDRGRYQVITN 87
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 48.8 bits (117), Expect = 3e-08
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
G D+ L C + P ++W + + SQ+ VV E LVI A D+
Sbjct: 23 GEDVELRCELSRAGTP---VHWLKDRKAIRKSQK--YDVVCEGTMAM--LVIRGASLKDA 75
Query: 147 GNYTCAPSSSDG-ASVVVHV 165
G YTC +S AS+ V
Sbjct: 76 GEYTCEVEASKSTASLHVEE 95
Score = 28.0 bits (63), Expect = 0.82
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 37 TLKIASSQLRDSGTYECQVSTE 58
L I + L+D+G Y C+V
Sbjct: 64 MLVIRGASLKDAGEYTCEVEAS 85
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 48.1 bits (115), Expect = 5e-08
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
IK+G NL + PDP W G + + + V + T + + A
Sbjct: 14 IKAGFTHNLEVDFIGAPDP--TATWTVGDSGAALAPE--LLVDAKSST--TSIFFPSAKR 67
Query: 144 SDSGNYTCA---PSSSDGASVVVHV 165
+DSGNY D A V V
Sbjct: 68 ADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 30.8 bits (70), Expect = 0.081
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
+ ++ S++ DSG Y+ +V
Sbjct: 44 ALAPELLVDAKSSTT--SIFFPSAKRADSGNYKLKVK 78
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 48.1 bits (115), Expect = 5e-08
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141
+ G +I L C + + + P W + V S R + ++ R +LVI+ A
Sbjct: 17 QTVNLGKEICLKCEI--SENIP--GKWTKNGLPVQESDR----LKVVQKGRIHKLVIANA 68
Query: 142 VTSDSGNYTC-APSSSDGASVVVHVL 166
+T D G+Y + + VHV+
Sbjct: 69 LTEDEGDYVFAPDAYNVTLPAKVHVI 94
Score = 27.3 bits (61), Expect = 1.3
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVV 70
L IA++ D G Y +++ K++V+
Sbjct: 62 KLVIANALTEDEGDYVFAPDAY-NVTLPAKVHVI 94
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 48.2 bits (115), Expect = 6e-08
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ + SG++ L CVVL P P + W +G + S+R +S + L+++
Sbjct: 21 RPVRVVSGAEAELKCVVLGEPPP--VVVWEKGGQQLAASER--LSFPADGAEHG--LLLT 74
Query: 140 KAVTSDSGNYTCAPSSSDG-----ASVVVHV 165
A+ +D+G Y C ++ G A+V V
Sbjct: 75 AALPTDAGVYVCRARNAAGEAYAAAAVTVLE 105
Score = 28.9 bits (65), Expect = 0.47
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYEC 53
R + +DG E L + ++ D+G Y C
Sbjct: 55 AASERLS-FPADG-AEHGLLLTAALPTDAGVYVC 86
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 48.2 bits (115), Expect = 6e-08
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141
L +K+ C V WY+ V S+R I++ + LVI
Sbjct: 18 LTVKAAEQAVFKCEV-SDEKVT--GKWYKNGVEVRPSKR--ITISHVGRFHK--LVIDDV 70
Query: 142 VTSDSGNYTC-APSSSDGASVVVHVL 166
D G+YT + S ++ L
Sbjct: 71 RPEDEGDYTFVPDGYALSLSAKLNFL 96
Score = 27.7 bits (62), Expect = 1.1
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 27 SLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVV 70
++ G L I + D G Y +S+ KLN +
Sbjct: 55 TISHVG-RFHKLVIDDVRPEDEGDYTFVPDGY-ALSLSAKLNFL 96
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 47.7 bits (114), Expect = 8e-08
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ + +GS E + W RG + ++ S + + TE T L +
Sbjct: 16 RSVEVAAGSPAVFEAET-ERAGVK--VRWQRGGSDISASNK--YGLATEGTRHT--LTVR 68
Query: 140 KAVTSDSGNYTC-APSSSDGASVVV 163
+ +D G+Y A SS + V
Sbjct: 69 EVGPADQGSYAVIAGSSKVKFDLKV 93
Score = 28.1 bits (63), Expect = 0.69
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 27 SLHSDGSDEWTLKIASSQLRDSGTYECQV 55
L ++G TL + D G+Y
Sbjct: 55 GLATEG-TRHTLTVREVGPADQGSYAVIA 82
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 48.3 bits (114), Expect = 8e-08
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 84 IKSGSDINLTCVVLETPDPPS-FIYWYRGANVVNYSQRGG-----ISVVTEKQTRTSRLV 137
+++G D + V P I W++G + S+ G S + T L
Sbjct: 24 VETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELH 83
Query: 138 ISKAVTSDSGNYTCAPSSSDG 158
I K V D G Y + D
Sbjct: 84 IGKVVLGDRGYYRLEVKAKDT 104
Score = 30.9 bits (69), Expect = 0.097
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 23 LRFTSLHSDGSDEWT--LKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69
F H+ S+ +T L I L D G Y +V + S G+ ++V
Sbjct: 65 FSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 47.8 bits (114), Expect = 8e-08
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
G + CV+ W G V S R +Q R LV+ +A SD+
Sbjct: 23 GESCSFECVLSH-ESASDPAMWTVGGKTVGSSSR----FQATRQGRKYILVVREAAPSDA 77
Query: 147 GNYTC-APSSSDGASVVVHVLNG 168
G + AS++V +G
Sbjct: 78 GEVVFSVRGLTSKASLIVRERSG 100
Score = 27.4 bits (61), Expect = 1.4
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 37 TLKIASSQLRDSGTYECQV 55
L + + D+G V
Sbjct: 66 ILVVREAAPSDAGEVVFSV 84
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 47.3 bits (113), Expect = 1e-07
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
++ G D+ ++ V P P + W R V QR E + RL I A
Sbjct: 17 VREGQDVIMSIRVQGEPKPV--VSWLRNRQPVRPDQR---RFAEEAEGGLCRLRILAAER 71
Query: 144 SDSGNYTC 151
D+G YTC
Sbjct: 72 GDAGFYTC 79
Score = 29.9 bits (68), Expect = 0.16
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQ 54
+ RF G L+I +++ D+G Y C+
Sbjct: 48 PDQRRFAEEAEGG--LCRLRILAAERGDAGFYTCK 80
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 47.3 bits (113), Expect = 1e-07
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141
+ + G +C P P + W R V++ S R ++ K T IS
Sbjct: 24 MTVYEGESARFSCDTDGEPVP--TVTWLRKGQVLSTSARHQVTTTKYKST----FEISSV 77
Query: 142 VTSDSGNYTCAPSSSDG-----ASVVVH 164
SD GNY+ +S+G ++ +
Sbjct: 78 QASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 28.1 bits (63), Expect = 0.88
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
+ R + T +I+S Q D G Y V
Sbjct: 56 STSARHQVTTTKYKS--TFEISSVQASDEGNYSVVVE 90
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 47.3 bits (113), Expect = 1e-07
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141
L + G L CV+ P + W G NV+ + S+ E LV+
Sbjct: 18 LEVLEGGAATLRCVLSSVAAP---VKWCYGNNVLRPGDK--YSLRQEGAMLE--LVVRNL 70
Query: 142 VTSDSGNYTC-APSSSDGASVVVHVL 166
DSG Y+C + A++ V L
Sbjct: 71 RPQDSGRYSCSFGDQTTSATLTVTAL 96
Score = 26.5 bits (59), Expect = 2.9
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 37 TLKIASSQLRDSGTYECQV 55
L + + + +DSG Y C
Sbjct: 64 ELVVRNLRPQDSGRYSCSF 82
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 47.4 bits (113), Expect = 1e-07
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
K G +NL P P + W +G + + V T + + +A
Sbjct: 36 RKVGEQLNLVVPFQGKPRPQ--VVWTKGGAPL---DTSRVHVRTSDFD--TVFFVRQAAR 88
Query: 144 SDSGNYTCA---PSSSDGASVVVHVL 166
SDSG Y + + D A++ + V+
Sbjct: 89 SDSGEYELSVQIENMKDTATIRIRVV 114
Score = 31.2 bits (71), Expect = 0.071
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 34 DEWTLKIASSQLRDSGTYECQVS 56
+ + + DSG YE V
Sbjct: 77 FDTVFFVRQAARSDSGEYELSVQ 99
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 47.0 bits (112), Expect = 2e-07
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 8/85 (9%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ G + + P + WY+ + S + + E + L I+
Sbjct: 16 PAYQVDKGGRVRFVVEL-ADPKLE--VKWYKNGQEIRPSTK----YIFEHKGCQRILFIN 68
Query: 140 KAVTSDSGNYTC-APSSSDGASVVV 163
+D Y A + V
Sbjct: 69 NCQMTDDSEYYVTAGDEKCSTELFV 93
Score = 27.7 bits (62), Expect = 1.0
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 27 SLHSDGSDEWTLKIASSQLRDSGTYECQV 55
G + L I + Q+ D Y
Sbjct: 55 IFEHKG-CQRILFINNCQMTDDSEYYVTA 82
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 46.6 bits (111), Expect = 2e-07
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
E+ ++G+ L+C V + WY+ ++ S + V E T RLV+
Sbjct: 19 REVQAEAGASATLSCEV-AQAQTE--VTWYKDGKKLSSSSK----VRVEAVGCTRRLVVQ 71
Query: 140 KAVTSDSGNYTC-APSSSDGASVVV 163
+A +++G Y+C A + V
Sbjct: 72 QAGQAEAGEYSCEAGGQQLSFRLQV 96
Score = 28.9 bits (65), Expect = 0.46
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 27 SLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
+ + G L + + ++G Y C+ +
Sbjct: 58 RVEAVG-CTRRLVVQQAGQAEAGEYSCEAGGQ 88
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 47.0 bits (112), Expect = 2e-07
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
G+ L C + + P + W++G + R S+ + L I V D+
Sbjct: 34 GATAVLRCEL--SKMAP--VEWWKGHETLRDGDR--HSLRQDGARCE--LQIRGLVAEDA 85
Query: 147 GNYTC-APSSSDGASVVVHVL 166
G Y C A + V +
Sbjct: 86 GEYLCMCGKERTSAMLTVRAM 106
Score = 26.9 bits (60), Expect = 2.1
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 37 TLKIASSQLRDSGTYECQVSTE 58
L+I D+G Y C E
Sbjct: 74 ELQIRGLVAEDAGEYLCMCGKE 95
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 46.6 bits (111), Expect = 2e-07
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
I G + TC V P P IYW++ ++ + T L + +
Sbjct: 20 IFEGMPVTFTCRVAGNPKP--KIYWFKDGKQISPK--SDHYTIQRDLDGTCSLHTTASTL 75
Query: 144 SDSGNYTCAPSSSDG-----ASVVVHVLN 167
D GNYT ++ G ++V +N
Sbjct: 76 DDDGNYTIMAANPQGRISCTGRLMVQAVN 104
Score = 30.0 bits (68), Expect = 0.20
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
+ ++ D +L +S L D G Y +
Sbjct: 50 SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAA 86
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 46.7 bits (111), Expect = 2e-07
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 1 VSWIRKRDLHILTVGILTY------TNDLRFTSLHSDGSDE-WTLKIASSQLRDSGTYEC 53
++W R + + V T + L F + +L++ ++ D G Y C
Sbjct: 37 LTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTC 96
Query: 54 QVSTEPK--ISIGYKLNVV 70
T P+ S+ L V+
Sbjct: 97 LFVTFPQGSRSVDIWLRVL 115
Score = 35.2 bits (81), Expect = 0.003
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 21/101 (20%)
Query: 87 GSDINLTCVVLETPDPPSF---IYWYR---GANVVNYSQRGGISVVTEKQTRTSR----- 135
G + L C + + + W R ++ + Q G S K+
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 136 ------LVISKAVTSDSGNYTC----APSSSDGASVVVHVL 166
L + D GNYTC P S + + VL
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 47.5 bits (113), Expect = 2e-07
Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 17/136 (12%)
Query: 43 SQLRDSGTYECQVSTEPKISIGYKLNVVISKAK-------IIGNSELYIKSGSDINLTCV 95
S + SG+ K+ +++ K ++ + GS C
Sbjct: 5 SGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCK 64
Query: 96 VLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSS 155
V PDP + W++ N V S+ + +++ S L IS+ D YTC +
Sbjct: 65 VEGYPDP--EVMWFKDDNPVKESRH--FQIDYDEEGNCS-LTISEVCGDDDAKYTCKAVN 119
Query: 156 SDG-----ASVVVHVL 166
S G A ++V +
Sbjct: 120 SLGEATCTAELLVETM 135
Score = 29.1 bits (65), Expect = 0.62
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
F + D +L I+ D Y C+
Sbjct: 83 KESRHFQ-IDYDEEGNCSLTISEVCGDDDAKYTCKAV 118
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 46.2 bits (110), Expect = 2e-07
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ G D L C V TP P I W + Y++ + + L I A+
Sbjct: 23 VIEGQDFVLQCSVRGTPVP--RITWLLNGQPIQYARS-------TCEAGVAELHIQDALP 73
Query: 144 SDSGNYTCAPSSSDG-----ASVVVH 164
D G YTC ++ G A V VH
Sbjct: 74 EDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 26.5 bits (59), Expect = 2.5
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 37 TLKIASSQLRDSGTYEC 53
L I + D GTY C
Sbjct: 65 ELHIQDALPEDHGTYTC 81
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 46.2 bits (110), Expect = 3e-07
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ G + C + + WY G + S++ I+ L +
Sbjct: 13 GEEGGHVKYVCKIENYDQSTQ-VTWYFGVRQLENSEKYEITYEDGVAI----LYVKDITK 67
Query: 144 SDSGNYTC 151
D G Y C
Sbjct: 68 LDDGTYRC 75
Score = 28.4 bits (64), Expect = 0.64
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
N ++ + DG L + D GTY C+V
Sbjct: 44 ENSEKYEITYEDG--VAILYVKDITKLDDGTYRCKVV 78
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 46.2 bits (110), Expect = 3e-07
Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 66 KLNVVISKAKIIGN-SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGIS 124
V + II + ++ ++ GS C + P ++W+ ++ ++ I
Sbjct: 6 SGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEP--VHWFLDKTPLHANELNEID 63
Query: 125 VVTEKQTRTSRLVISKAVTSDSGNYTC-APSSSDGASVVVH 164
+ L + + DSG A A++ V
Sbjct: 64 A---QPGGYHVLTLRQLALKDSGTIYFEAGDQRASAALRVT 101
Score = 28.1 bits (63), Expect = 0.97
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
+ G L + L+DSGT +
Sbjct: 55 HANELNEIDAQPG-GYHVLTLRQLALKDSGTIYFEA 89
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 45.8 bits (109), Expect = 4e-07
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
G I LT + D + W + + S + E L IS+ +D
Sbjct: 31 GHKIRLTVEL-ADHDAE--VKWLKNGQEIQMSGSK---YIFESIGAKRTLTISQCSLADD 84
Query: 147 GNYTC-APSSSDGASVVV 163
Y C + V
Sbjct: 85 AAYQCVVGGEKCSTELFV 102
Score = 28.9 bits (65), Expect = 0.39
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 37 TLKIASSQLRDSGTYECQVSTE 58
TL I+ L D Y+C V E
Sbjct: 73 TLTISQCSLADDAAYQCVVGGE 94
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 45.9 bits (109), Expect = 4e-07
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
G + L C + P P ++W R +V ++ + + T L+I D+
Sbjct: 30 GDSVKLECQISAIPPPK--LFWKRNNEMVQFN--TDRISLYQDNTGRVTLLIKDVNKKDA 85
Query: 147 GNYTCAPSSSDG-----ASVVVHV 165
G YT + + G + V
Sbjct: 86 GWYTVSAVNEAGVTTCNTRLDVTA 109
Score = 31.6 bits (72), Expect = 0.066
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQ 54
+ SL+ D + TL I +D+G Y
Sbjct: 57 QFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS 91
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 45.9 bits (109), Expect = 5e-07
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ L+CV +P P I W + +V S + E L I
Sbjct: 16 VNQTVAVDGTFVLSCVATGSPVP--TILWRKDGVLV--STQDSRIKQLENGV----LQIR 67
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
A D+G YTC S+ G S + V
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97
Score = 34.0 bits (78), Expect = 0.009
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
+ W + G+L T D R L +G L+I ++L D+G Y C ST
Sbjct: 40 ILWRKD--------GVLVSTQDSRIKQL-ENG----VLQIRYAKLGDTGRYTCIASTP 84
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 45.3 bits (108), Expect = 5e-07
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ GSD + V+ PDP WY+ + S R I + LVI
Sbjct: 17 VGQGSDAHFRVRVVGKPDP--ECEWYKNGVKIERSDR--IYWYWPEDNVCE-LVIRDVTG 71
Query: 144 SDSGNYTC 151
DS +
Sbjct: 72 EDSASIMV 79
Score = 27.2 bits (61), Expect = 1.7
Identities = 5/37 (13%), Positives = 9/37 (24%), Gaps = 1/37 (2%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
R + + L I DS + +
Sbjct: 47 ERSDRIY-WYWPEDNVCELVIRDVTGEDSASIMVKAI 82
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 45.2 bits (107), Expect = 7e-07
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 15/87 (17%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
++ G+D+ C ++ P + W R + + L I
Sbjct: 22 VRPGADVTFICTA-KSKSPAYTLVWTRL---------HNGKLPSRAMDFNGILTIRNVQP 71
Query: 144 SDSGNYTCAPSSSDG-----ASVVVHV 165
SD+G Y C S+ A++ V V
Sbjct: 72 SDAGTYVCTGSNMFAMDQGTATLHVQV 98
Score = 29.0 bits (65), Expect = 0.39
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 37 TLKIASSQLRDSGTYECQVS 56
L I + Q D+GTY C S
Sbjct: 63 ILTIRNVQPSDAGTYVCTGS 82
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 47.5 bits (112), Expect = 8e-07
Identities = 27/144 (18%), Positives = 54/144 (37%), Gaps = 30/144 (20%)
Query: 37 TLKIASSQLRDSGTYECQVS-TEPKISIGYKLNVVISKAKIIGNSE---LYIKSGSDINL 92
TL +A + ++G+Y+ V T+ S+ ++ ++ I+ +E Y+ S +D+ L
Sbjct: 53 TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVEL 112
Query: 93 TCVVLET-----PDPPSFIY-WYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
V + D Y W +G +V++ T + I + +
Sbjct: 113 HATVKFSGGKTPADNYELHYSWSKGEDVID---------------TTQDITIQEFTADKN 157
Query: 147 GNYTCAPSSSDG-----ASVVVHV 165
G YT AS + +
Sbjct: 158 GVYTVKVWGESEDSAASASTKIML 181
Score = 41.0 bits (95), Expect = 1e-04
Identities = 23/142 (16%), Positives = 39/142 (27%), Gaps = 15/142 (10%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKS---GSDINLT 93
+ I +G Y +V E + S ++ + + K+ G++I+L
Sbjct: 146 DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLN 205
Query: 94 CVVLE--------TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQ----TRTSRLVISKA 141
VV E P+ WY G V + T L A
Sbjct: 206 YVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESA 265
Query: 142 VTSDSGNYTCAPSSSDGASVVV 163
D+ + C
Sbjct: 266 TYDDTAKFWCVAKLYQQIEDET 287
Score = 35.2 bits (80), Expect = 0.009
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 16/77 (20%)
Query: 84 IKSGSDINLTCVVL-ETPDPPSFIY-WYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141
+G LT V + P P + Y W + T+ L ++ A
Sbjct: 14 FLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE--------------NNTATLTVADA 59
Query: 142 VTSDSGNYTCAPSSSDG 158
+ ++G+Y +D
Sbjct: 60 TSENAGSYKVTVQDTDT 76
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 44.6 bits (106), Expect = 1e-06
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 11/88 (12%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ S S P P W + + + + +K L I K T
Sbjct: 18 VSSDSVAKFAVKATGEPRPT--AIWTKDGKAITQGGK--YKLSEDKGGFF--LEIHKTDT 71
Query: 144 SDSGNYTCAPSSSDG-----ASVVVHVL 166
SDSG YTC +S G + + +
Sbjct: 72 SDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
Score = 28.8 bits (65), Expect = 0.43
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
T ++ G + L+I + DSG Y C V
Sbjct: 48 TQGGKYKLSEDKGG--FFLEIHKTDTSDSGLYTCTVK 82
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 44.3 bits (105), Expect = 1e-06
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ G + L C + D S I W R + S R + + + +V
Sbjct: 15 VHPGDLLQLRCRL--RDDVQS-INWLRDGVQLAESNR--------TRITGEEVEVQDSVP 63
Query: 144 SDSGNYTCAPSSSDG---ASVVVHV 165
+DSG Y C SS G V+V
Sbjct: 64 ADSGLYACVTSSPSGSDTTYFSVNV 88
Score = 29.7 bits (67), Expect = 0.24
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVV 70
+++ S DSG Y C S+ + + +NV
Sbjct: 55 EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 44.3 bits (105), Expect = 2e-06
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+L ++ G + C V P P + W V + ++ L+I
Sbjct: 17 GDLTVQEGKLCRMDCKVSGLPTP--DLSWQLDGKPVRPDSA---HKMLVRENGVHSLIIE 71
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
+ D+G YTC ++ G S+ + V
Sbjct: 72 PVTSRDAGIYTCIATNRAGQNSFSLELVVA 101
Score = 28.5 bits (64), Expect = 0.66
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
D L + +L I RD+G Y C +
Sbjct: 51 RPDSAHKMLVRENGVH-SLIIEPVTSRDAGIYTCIAT 86
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 46.7 bits (111), Expect = 2e-06
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR--GANVVNYSQRGGISVVTEKQTRTSRLV 137
++L + G L C + + W G + + + + I+V+++ L
Sbjct: 349 ADLNVTEGMAAELKC---RASTSLTSVSWITPNGTVMTHGAYKVRIAVLSD-----GTLN 400
Query: 138 ISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
+ D+G YTC S+S G AS ++V
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432
Score = 29.3 bits (66), Expect = 1.00
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
VSWI + ++T G +R + SDG TL + ++D+G Y C VS
Sbjct: 372 VSWI-TPNGTVMTHG----AYKVRIA-VLSDG----TLNFTNVTVQDTGMYTCMVS 417
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 44.4 bits (105), Expect = 2e-06
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISK 140
+ + LTC + P + W + V S + + E R RLV+
Sbjct: 22 YVAAVRLERVVLTCEL-CRPWAE--VRWTKDGEEVVESPA--LLLQKEDTVR--RLVLPA 74
Query: 141 AVTSDSGNYTC-APSSSDGASVVVHV 165
DSG Y C S +V V
Sbjct: 75 VQLEDSGEYLCEIDDESASFTVTVTE 100
Score = 27.4 bits (61), Expect = 1.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 37 TLKIASSQLRDSGTYECQVSTE 58
L + + QL DSG Y C++ E
Sbjct: 69 RLVLPAVQLEDSGEYLCEIDDE 90
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 43.9 bits (104), Expect = 2e-06
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ I G + V P P + WY V ++ ++ S L+
Sbjct: 13 ENMSIDEGRFCRMDFKVSGLPAP--DVSWYLNGRTVQSDDL--HKMIVSEKGLHS-LIFE 67
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
SD+G Y C + G +V + VL
Sbjct: 68 VVRASDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 28.4 bits (64), Expect = 0.54
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYEC 53
+D + S+ +L + D+G Y C
Sbjct: 47 QSDDLHKMIVSEK-GLHSLIFEVVRASDAGAYAC 79
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 44.0 bits (104), Expect = 2e-06
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 14/89 (15%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
L + G + L C + D S I W R + S R + + +
Sbjct: 17 ESLLVHPGDLLQLRCRL--RDDVQS-INWLRDGVQLVESNR--------TRITGEEVEVR 65
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHV 165
++ +DSG Y C SS G V+V
Sbjct: 66 DSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 31.7 bits (72), Expect = 0.039
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEP-KISIGYKLNV 69
+++ S DSG Y C S+ + + +NV
Sbjct: 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 43.9 bits (104), Expect = 2e-06
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 21/94 (22%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ + GS + L CV + +P P W++ + ++
Sbjct: 11 TSQKLMPGSTLVLQCVAVGSP-IPH-YQWFKNELPL-------------THETKKLYMVP 55
Query: 140 KAVTSDSGNYTCAPSSSDG------ASVVVHVLN 167
G Y C + +++ LN
Sbjct: 56 YVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
Score = 30.8 bits (70), Expect = 0.075
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 31 DGSDEWTLKIASSQLRDSGTYECQVS 56
+ + L GTY C V
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHVY 70
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 43.9 bits (104), Expect = 2e-06
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ + L C P P I W + R + + E+ T L I
Sbjct: 16 ANQTLAVDGTALLKCKATGDPLP--VISWLKEGFTF--PGRDPRATIQEQGT----LQIK 67
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
SD+G YTC +SS G S V+ V
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 32.4 bits (74), Expect = 0.027
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
+SW+++ G D R T + G TL+I + ++ D+GTY C +
Sbjct: 40 ISWLKE--------GFTFPGRDPRAT-IQEQG----TLQIKNLRISDTGTYTCVAT 82
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 45.8 bits (108), Expect = 2e-06
Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 18/131 (13%)
Query: 31 DGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNV-----VISKAKIIGNSELYIK 85
D ++ ++ I + + D GTYEC V K + + V + S+ I
Sbjct: 60 DITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIP 119
Query: 86 SGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR----TSRLVISK 140
+ + + C P+P + W +N +V + +T +S+L +
Sbjct: 120 TSNIRRIICSTSGGFPEP--HLSWLENGEELNAIN---TTVSQDPETELYAVSSKLDFN- 173
Query: 141 AVTSDSGNYTC 151
+ + ++ C
Sbjct: 174 --MTTNHSFMC 182
Score = 40.0 bits (93), Expect = 2e-04
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 87 GSDINLTCVVLETPDPPS--FIYWYRGANVVNYSQRGGISVVTEKQTRTSR-------LV 137
L+C + + + IYW + +V G +++ E + RT +V
Sbjct: 9 KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIV 68
Query: 138 ISKAVTSDSGNYTCAPSSSDGASVV 162
I SD G Y C + +
Sbjct: 69 ILALRPSDEGTYECVVLKYEKDAFK 93
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 43.8 bits (104), Expect = 2e-06
Identities = 7/65 (10%), Positives = 16/65 (24%), Gaps = 7/65 (10%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
G + + PD W + S + + L++ +
Sbjct: 20 GETAHFEIEL-SEPDVH--GQWKLKGQPLAASPD----CEIIEDGKKHILILHNCQLGMT 72
Query: 147 GNYTC 151
G +
Sbjct: 73 GEVSF 77
Score = 27.6 bits (62), Expect = 0.87
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 37 TLKIASSQLRDSGTYECQVSTE 58
L + + QL +G Q +
Sbjct: 61 ILILHNCQLGMTGEVSFQAANT 82
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 45.4 bits (107), Expect = 2e-06
Identities = 30/131 (22%), Positives = 43/131 (32%), Gaps = 16/131 (12%)
Query: 26 TSLHSDGSDE--WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELY 83
+L + I S Q+RDSG Y C V Y V + I L
Sbjct: 55 ATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILE 114
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQR---GGISVVTEKQTRTSRLVISK 140
+ ++ LTC P + W + N S G+ V TS L +
Sbjct: 115 VPGTGEVQLTCQARGYPLAE--VSWQNVSVPANTSHIRTPEGLYQV------TSVLRLK- 165
Query: 141 AVTSDSGNYTC 151
S N++C
Sbjct: 166 --PQPSRNFSC 174
Score = 38.1 bits (88), Expect = 9e-04
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 7/77 (9%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRG----ANVVNYSQRGGISVVTEKQTRTSR-LVISKA 141
GS ++L C + + R Q +++ E+ I
Sbjct: 17 GSSVSLECDF--DRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSV 74
Query: 142 VTSDSGNYTCAPSSSDG 158
DSG Y C
Sbjct: 75 QVRDSGQYRCLVICGAA 91
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 43.9 bits (104), Expect = 3e-06
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 13/87 (14%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
G I ++C P P I W++ + I + + L I +
Sbjct: 22 TSIGESIEVSCTASGNPPP--QIMWFKDNETLVEDSG--IVLKDGNRN----LTIRRVRK 73
Query: 144 SDSGNYTCAPSSSDG-----ASVVVHV 165
D G YTC S G A ++
Sbjct: 74 EDEGLYTCQACSVLGCAKVEAFFIIEG 100
Score = 26.5 bits (59), Expect = 2.9
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVS 56
L I + D G Y CQ
Sbjct: 61 DGNRNLTIRRVRKEDEGLYTCQAC 84
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 45.6 bits (108), Expect = 3e-06
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 12/86 (13%)
Query: 86 SGSDINLTCVVLETPDPPSFIYW-YRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
G + + C + ++ V++ G +SV R L K
Sbjct: 260 LGDTLTIRCDT--KQQGMTKVWVSPSNEQVLSQGSNGSVSV------RNGDLFFKKVQVE 311
Query: 145 DSGNYTCAPSSSDG---ASVVVHVLN 167
D G YTC SV + V N
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKVYN 337
Score = 28.3 bits (63), Expect = 1.9
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 37 TLKIASSQLRDSGTYECQVS 56
L Q+ D G Y C
Sbjct: 302 DLFFKKVQVEDGGVYTCYAM 321
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 43.1 bits (102), Expect = 4e-06
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 6/68 (8%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ G + V P + WY + S + I T L I T
Sbjct: 20 VPCGQNTRFILNVQSKPTA--EVKWYHNGVELQESSK--IHYTNTSGVLT--LEILDCHT 73
Query: 144 SDSGNYTC 151
DSG Y
Sbjct: 74 DDSGTYRA 81
Score = 30.0 bits (68), Expect = 0.20
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
+ ++ G TL+I DSGTY +
Sbjct: 50 QESSKIHYTNTSG--VLTLEILDCHTDDSGTYRAVCT 84
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 45.6 bits (107), Expect = 4e-06
Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 12/119 (10%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAK---IIGNSELYIKSGSDINLT 93
S +++ C P K + + + + G ++ L
Sbjct: 49 RKVYELSNVQEDSQPMCYS-NCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLR 107
Query: 94 CVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
C V P + RG + V E T+ +++ + N++C
Sbjct: 108 CQVEGGAPRANLTVVLLRGEKELKRE-----PAVGEPAEVTTTVLVRRD--HHGANFSC 159
Score = 44.1 bits (103), Expect = 1e-05
Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 29/144 (20%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNV----VISKAKII---GNSELYIK 85
L + ++ + ++ C + E + +K V+ ++
Sbjct: 324 GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWP 383
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
S C +P + + G + + +R
Sbjct: 384 ENSQQTPMCQA--WGNPLPELKCLK---------DGTFPLPIGESVTVTR--------DL 424
Query: 146 SGNYTCAPSSSDG---ASVVVHVL 166
G Y C S+ G V V+VL
Sbjct: 425 EGTYLCRARSTQGEVTREVTVNVL 448
Score = 41.0 bits (95), Expect = 1e-04
Identities = 14/150 (9%), Positives = 39/150 (26%), Gaps = 28/150 (18%)
Query: 27 SLHSDGSDEWTLKIASSQLRDSGTYE--CQVSTEPK-ISIGYKLNVVISKAKIIGNSELY 83
++ S D GT C V + + + A + ++
Sbjct: 235 TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPE 294
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ G+++ + C P + + ++L++
Sbjct: 295 VSEGTEVTVKCEA--HPRAKVTLNGVPA----------------QPLGPRAQLLLKATPE 336
Query: 144 SDSGNYTC-------APSSSDGASVVVHVL 166
+ +++C + + VL
Sbjct: 337 DNGRSFSCSATLEVAGQLIHKNQTRELRVL 366
Score = 34.8 bits (79), Expect = 0.016
Identities = 17/146 (11%), Positives = 35/146 (23%), Gaps = 25/146 (17%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSEL-----------YIK 85
T + + + C+ + G +L S + L ++
Sbjct: 143 TTTVLVRRDHHGANFSCRTELD-LRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201
Query: 86 SGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
+ + C + P + ++ G +N VT S
Sbjct: 202 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN-------PTVTYGNDSFSAKASVSVTAE 254
Query: 145 DSGNYTC-----APSSSDGASVVVHV 165
D G + S V +
Sbjct: 255 DEGTQRLTCAVILGNQSQETLQTVTI 280
Score = 27.5 bits (60), Expect = 3.1
Identities = 12/88 (13%), Positives = 21/88 (23%), Gaps = 13/88 (14%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
S++ + G + +TC I + R V
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNN-------------RKVYE 53
Query: 140 KAVTSDSGNYTCAPSSSDGASVVVHVLN 167
+ + C + DG S L
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQSTAKTFLT 81
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 44.7 bits (106), Expect = 7e-06
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWY--RGANVVNYSQRGGISVVTEKQTRTSRLV 137
+L I G L C P S + W G + + S+ ISV+ + L
Sbjct: 360 RDLNISEGRMAELKCRT----PPMSSVKWLLPNGTVLSHASRHPRISVLND-----GTLN 410
Query: 138 ISKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
S + SD+G YTC ++ G AS ++V
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 30.5 bits (69), Expect = 0.40
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 16 ILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
+L++ + S+ +DG TL + L D+G Y C V+
Sbjct: 391 VLSHASRHPRISVLNDG----TLNFSHVLLSDTGVYTCMVT 427
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 44.3 bits (104), Expect = 7e-06
Identities = 18/139 (12%), Positives = 35/139 (25%), Gaps = 29/139 (20%)
Query: 38 LKIASSQLRDSGTYECQVSTEPKISIGYK-----LNVVI--SKAKIIGNSELYIKSGSDI 90
L + ++ + ++ C + E + +K L V+ + S
Sbjct: 144 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 203
Query: 91 NLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYT 150
C +P + + + G Y
Sbjct: 204 TPMCQA--WGNPLPELKCLK-----------------DGTFPLPIGESVTVTRDLEGTYL 244
Query: 151 CAPSSSDG---ASVVVHVL 166
C S+ G V V+VL
Sbjct: 245 CRARSTQGEVTREVTVNVL 263
Score = 42.7 bits (100), Expect = 3e-05
Identities = 11/149 (7%), Positives = 40/149 (26%), Gaps = 26/149 (17%)
Query: 26 TSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK-ISIGYKLNVVISKAKIIGNSELYI 84
+ +D +++ + C V + + + A + ++ +
Sbjct: 51 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV 110
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
G+++ + C P + + ++L++
Sbjct: 111 SEGTEVTVKCEA--HPRAKVTLNGVPA----------------QPLGPRAQLLLKATPED 152
Query: 145 DSGNYTC-------APSSSDGASVVVHVL 166
+ +++C + + VL
Sbjct: 153 NGRSFSCSATLEVAGQLIHKNQTRELRVL 181
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 42.0 bits (99), Expect = 8e-06
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 20/88 (22%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ G + LTC V P I+W + + L++ +
Sbjct: 22 VAPGGTVTLTCEV--PAQPSPQIHWMKDGVPLPLPPSPV-------------LILPEIGP 66
Query: 144 SDSGNYTCAPSSSDG-----ASVVVHVL 166
D G Y+C + S +V + ++
Sbjct: 67 QDQGTYSCVATHSSHGPQESRAVSISII 94
Score = 27.0 bits (60), Expect = 1.9
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 37 TLKIASSQLRDSGTYECQVS 56
L + +D GTY C +
Sbjct: 58 VLILPEIGPQDQGTYSCVAT 77
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 42.3 bits (99), Expect = 1e-05
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 11/81 (13%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQ---------RGGISVVTEKQTRTSRLV 137
G + L C + +P P I W+ N T Q S +
Sbjct: 36 GGSVELHCEAVGSPVP--EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTIS 93
Query: 138 ISKAVTSDSGNYTCAPSSSDG 158
I V D+G Y C S+
Sbjct: 94 IDTLVEEDTGTYECRASNDPD 114
Score = 35.4 bits (81), Expect = 0.004
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHS--DGSDEWTLKIASSQLRDSGTYECQVS 56
+ W + L L +H+ T+ I + D+GTYEC+ S
Sbjct: 53 IQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRAS 110
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 42.2 bits (99), Expect = 1e-05
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 82 LYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSR---LV 137
+ + + +++ C+ P + W +V+N + + T R L
Sbjct: 7 VQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR 66
Query: 138 ISKAVTSDSGNYTCA---PSSSDGASVVVHVL 166
+++ ++GNYT P AS++ +
Sbjct: 67 LNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98
Score = 28.0 bits (62), Expect = 1.1
Identities = 5/40 (12%), Positives = 12/40 (30%), Gaps = 4/40 (10%)
Query: 21 NDLRFTSLHSDGSD----EWTLKIASSQLRDSGTYECQVS 56
FT ++ L++ ++G Y +
Sbjct: 44 TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 83
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 41.7 bits (97), Expect = 2e-05
Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 30/115 (26%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR------- 132
+ + +G+ + L + P P + W + N + E
Sbjct: 26 DTIVVVAGNKLRLDVPISGDPAP--TVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFD 83
Query: 133 ------------------TSRLVISKAVTSDSGNYTCA---PSSSDGASVVVHVL 166
S + A D G YT P D ++ V V+
Sbjct: 84 KKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
Score = 30.5 bits (68), Expect = 0.17
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 32 GSDEWTLKIASSQLRDSGTYECQVS 56
D + ++ D G Y V
Sbjct: 99 TKDRSIFTVEGAEKEDEGVYTVTVK 123
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 42.9 bits (101), Expect = 2e-05
Identities = 29/166 (17%), Positives = 48/166 (28%), Gaps = 34/166 (20%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST----EPKISIGYKLNVVISKAKIIGN 79
+ + + + DSG Y C + G L V +
Sbjct: 67 GKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDA 126
Query: 80 -----------------SELYIKSGSDINLTCVVLETPDPPSFIYWYR------------ 110
S + + + L C+ ET +I+WY+
Sbjct: 127 KKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLY-ETSWWSYYIFWYKRLPSKEMIFLIR 185
Query: 111 GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSS 156
+ ++ G SV +K ++ L IS DS Y CA S
Sbjct: 186 QGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES 231
Score = 34.0 bits (78), Expect = 0.020
Identities = 10/55 (18%), Positives = 19/55 (34%)
Query: 106 IYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160
Y + V+ G + R+++ + +DSG Y CA +
Sbjct: 51 YDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYK 105
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 42.5 bits (100), Expect = 4e-05
Identities = 21/156 (13%), Positives = 43/156 (27%), Gaps = 6/156 (3%)
Query: 3 WIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKIS 62
W+ + I + S+ + ++ + + E I
Sbjct: 413 WLTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIR 472
Query: 63 IGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG 122
+ I+ + G N C V+ + P + W++ + S +
Sbjct: 473 DAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPP--VVTWHKDDRELKQSVKYM 530
Query: 123 ISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
L I++ D G YT +S G
Sbjct: 531 KRYNGNDYG----LTINRVKGDDKGEYTVRAKNSYG 562
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 40.4 bits (95), Expect = 4e-05
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYR----GANVVNYSQRGGISVVTEKQTRTSRLVISKAV 142
G + + CV+ + WYR N + S+ G +++ L I+
Sbjct: 15 GESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLT 74
Query: 143 TSDSGNYTCAPSSSDG 158
D G Y C + G
Sbjct: 75 VEDGGTYRCGLGVAGG 90
Score = 33.1 bits (76), Expect = 0.017
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57
R+ + GS ++L+I + D GTY C +
Sbjct: 54 RYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV 87
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 41.6 bits (97), Expect = 5e-05
Identities = 14/126 (11%), Positives = 28/126 (22%), Gaps = 5/126 (3%)
Query: 29 HSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAK--IIGNSELYIKS 86
+ W + C + L + + +
Sbjct: 44 GTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPV 103
Query: 87 GSDINLTCVVL-ETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
G + L+C V P + RGA + G + +
Sbjct: 104 GENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRA--RGAVLTATVLARREDH 161
Query: 146 SGNYTC 151
N++C
Sbjct: 162 GANFSC 167
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 41.6 bits (97), Expect = 6e-05
Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 8/129 (6%)
Query: 26 TSLHSDGSDE--WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELY 83
TS+ DG L+I + DSG Y C + + ++ + ++
Sbjct: 71 TSILRDGITAGKAALRIHNVTASDSGKYLCYFQD-GDFYEKALVELKVAALGSDLHVDVK 129
Query: 84 IKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAV 142
I+L C P P I W + + + VI +
Sbjct: 130 GYKDGGIHLECRSTGWYPQP--QIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMR-- 185
Query: 143 TSDSGNYTC 151
S +C
Sbjct: 186 GSSGEGVSC 194
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 39.9 bits (93), Expect = 7e-05
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 13/98 (13%)
Query: 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN--VVNYSQRGGISVVTEKQTR------ 132
+ + SGS++ L P+ + W+ + +V + R ++ + R
Sbjct: 13 HMTVVSGSNVTLNISESL-PENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQ 71
Query: 133 TSRLVISKAVTSDSGNYTCAPSSSDG----ASVVVHVL 166
+ L ISK D+ Y G + + VL
Sbjct: 72 SGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVL 109
Score = 29.5 bits (66), Expect = 0.30
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 1 VSWIRKRDLHILTV--GILTYTNDL---RFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
++W D I+ Y R G+ L I+ Q D+ TY +V
Sbjct: 37 LTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGA----LYISKVQKEDNSTYIMRV 92
Query: 56 STEPKISIGYKLNV 69
+ +K+ +
Sbjct: 93 LKKTGNEQEWKIKL 106
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 41.4 bits (97), Expect = 7e-05
Identities = 17/131 (12%), Positives = 37/131 (28%), Gaps = 16/131 (12%)
Query: 31 DGSDEWTLKIASSQLRDSGTYECQ-----VSTEPKISIGYKLNVVISKAKIIGNSELYIK 85
+ ++ I R +G Y C + +EP + + + + + +
Sbjct: 55 ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVI 114
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
SG + C S + + + G + + T+
Sbjct: 115 SGEKVTFYC---RLDTATSMFLLLKEGRSSHVQRGYGKV--------QAEFPLGPVTTAH 163
Query: 146 SGNYTCAPSSS 156
G Y C S +
Sbjct: 164 RGTYRCFGSYN 174
Score = 28.7 bits (64), Expect = 1.1
Identities = 6/77 (7%), Positives = 21/77 (27%), Gaps = 8/77 (10%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ + + C + + ++ + + + + I +
Sbjct: 18 VPKEKQVTICC---QGNYGAVEYQLHFEGSLFAVDRPKPPERINKV-----KFYIPDMNS 69
Query: 144 SDSGNYTCAPSSSDGAS 160
+G Y+C + S
Sbjct: 70 RMAGQYSCIYRVGELWS 86
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 39.6 bits (93), Expect = 1e-04
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR-------------GANVVNYSQRGGISVV 126
+ + + + + + CV ET D F++WY+ + + G S+
Sbjct: 8 TSISVMEKTTVTMDCV-YETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLN 66
Query: 127 TEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160
+K + L+I+ DS Y CA G S
Sbjct: 67 FQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGS 100
Score = 33.5 bits (77), Expect = 0.018
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKL 67
++ L I ++Q+ DS Y C + G KL
Sbjct: 62 HYSLNFQKPKSSIGLIITATQIEDSAVYFCAMR-GDYGGSGNKL 104
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 40.8 bits (94), Expect = 2e-04
Identities = 20/142 (14%), Positives = 33/142 (23%), Gaps = 13/142 (9%)
Query: 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVIS-KAKII-GN 79
+ T + Q GTY + + + +L V K ++
Sbjct: 241 WDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT 300
Query: 80 SELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR------ 132
+ L C+V P + W SQ+
Sbjct: 301 LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSV 360
Query: 133 --TSRLVISKAVTSDSGN-YTC 151
+ L T G Y C
Sbjct: 361 SLSGHLQPPPVTTEQHGARYAC 382
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 40.5 bits (94), Expect = 2e-04
Identities = 15/140 (10%), Positives = 39/140 (27%), Gaps = 11/140 (7%)
Query: 30 SDGSDEW---TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI-----SKAKIIGNSE 81
D + W L I++ +++ + + V+ +
Sbjct: 114 GDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQN 173
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141
+ + +G C + + V + I V + ++ + +
Sbjct: 174 VEVNAGQFATFQCSA--IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRF-IASFNVVNT 230
Query: 142 VTSDSGNYTCAPSSSDGASV 161
D+G Y C + G +
Sbjct: 231 TKRDAGKYRCMIRTEGGVGI 250
Score = 29.4 bits (65), Expect = 0.91
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 21 NDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
L+ + S + + ++ RD+G Y C + TE
Sbjct: 208 APLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTE 245
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 38.2 bits (88), Expect = 2e-04
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 10/81 (12%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISK-AVTS 144
SG+ + LTC P S I W + + E L + + +
Sbjct: 20 SGTTVILTCPQ----YPGSEILWQHNDKNIGGDEDDKNIGSDEDH-----LSLKEFSELE 70
Query: 145 DSGNYTCAPSSSDGASVVVHV 165
SG Y C P S ++
Sbjct: 71 QSGYYVCYPRGSKPEDANFYL 91
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 38.6 bits (90), Expect = 2e-04
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 11/96 (11%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQ---RGGISVVTEKQTRTSRL 136
S+L + G L C P I WY+G V + R ++ R+
Sbjct: 17 SDLIVSKGEPATLNCKA--EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRI 74
Query: 137 VISKAVTSDSGNYTCA------PSSSDGASVVVHVL 166
V + D G Y C + S AS+ V
Sbjct: 75 VHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 39.9 bits (93), Expect = 2e-04
Identities = 18/141 (12%), Positives = 43/141 (30%), Gaps = 14/141 (9%)
Query: 19 YTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQ--------VSTEPKISIGYKLNVV 70
Y D + + + ++ +G Y C+ + P + +
Sbjct: 57 YKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGN 116
Query: 71 ISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQ 130
K ++ + +KSG + L C + + ++ + S+ G +
Sbjct: 117 HRKPSLLAHPGPLVKSGERVILQC---WSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSK 173
Query: 131 TRTSRLVISKAVTSDSGNYTC 151
I + + +G Y C
Sbjct: 174 A---NFSIGPMMLALAGTYRC 191
Score = 35.2 bits (81), Expect = 0.010
Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 16/137 (11%)
Query: 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYK----LNVVISKA---- 74
R DG + I L +GTY C S L++V++
Sbjct: 161 SRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKP 220
Query: 75 KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTS 134
+ +++G + L+C + + R K RT
Sbjct: 221 SLSAQPGPKVQAGESVTLSC---SSRSSYDMYHLSR-----EGGAHERRLPAVRKVNRTF 272
Query: 135 RLVISKAVTSDSGNYTC 151
+ + G Y C
Sbjct: 273 QADFPLGPATHGGTYRC 289
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 38.4 bits (90), Expect = 2e-04
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR-------------GANVVNYSQRGGISVV 126
+ + + + + + CV ET D F++WY+ + + G S+
Sbjct: 8 TSISVMEKTTVTMDCV-YETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLN 66
Query: 127 TEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160
+K + L+I+ DS Y CA G S
Sbjct: 67 FQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGS 100
Score = 33.8 bits (78), Expect = 0.011
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKL 67
++ L I ++Q+ DS Y C + G KL
Sbjct: 62 HYSLNFQKPKSSIGLIITATQIEDSAVYFCAMR-GDYGGSGNKL 104
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 38.5 bits (90), Expect = 2e-04
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 9 LHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59
+ G+ D RF + ++ + I ++ DSG Y C +
Sbjct: 46 QAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLH 96
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 39.6 bits (92), Expect = 3e-04
Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 21/148 (14%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQV-----STEPKISIGYKLNVVISKAKIIG 78
RF++ S +L+I SS+ DS Y C G +L V+ +
Sbjct: 90 RFSAECPSNSP-CSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFP 148
Query: 79 N-------SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT 131
SE I L C+ + W+ V+ + E+
Sbjct: 149 PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPA 208
Query: 132 R-------TSRLVISKAVTSDSGN-YTC 151
+SRL +S + N + C
Sbjct: 209 LNDSRYALSSRLRVSATFWQNPRNHFRC 236
Score = 26.9 bits (59), Expect = 4.5
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 6/84 (7%)
Query: 102 PPSFIYWYRGANVVNYSQRGGISV---VTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
F+ ++ V+ L I + DS Y CA SS +
Sbjct: 68 EFKFLINFQNQEVLQQI--DMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCA-SSLNW 124
Query: 159 ASVVVHVLNGKKFNKLSSLRGRVG 182
+ + G + L L+
Sbjct: 125 SQDTQYFGPGTRLLVLEDLKNVFP 148
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 39.1 bits (91), Expect = 4e-04
Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 15/134 (11%)
Query: 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST-----EPKISIGYKLNVVISKAKII 77
L + I +G Y+CQ ++ + + K +
Sbjct: 51 EIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLS 110
Query: 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLV 137
+ L + G +I+LTC P F G + Q G +
Sbjct: 111 ADRGLVLMPGENISLTCSSAHIP-FDRFSLAKEGELSLPQHQSGE---------HPANFS 160
Query: 138 ISKAVTSDSGNYTC 151
+ + SG Y C
Sbjct: 161 LGPVDLNVSGIYRC 174
Score = 31.4 bits (71), Expect = 0.14
Identities = 9/77 (11%), Positives = 17/77 (22%), Gaps = 6/77 (7%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
I + + C + + + +R T VI
Sbjct: 20 IPLDGSVKIQCQAIREAYLTQL-MIIKNSTYREIGRRLKFWNET-----DPEFVIDHMDA 73
Query: 144 SDSGNYTCAPSSSDGAS 160
+ +G Y C
Sbjct: 74 NKAGRYQCQYRIGHYRF 90
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 37.6 bits (88), Expect = 4e-04
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57
RFT + + +L IA SQ DS TY C S
Sbjct: 59 RFTIFFNKREKKLSLHIADSQPGDSATYFCAASA 92
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 38.7 bits (90), Expect = 4e-04
Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 11/132 (8%)
Query: 26 TSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGY------KLNVVISKAKIIGN 79
T + + + I S +G Y C ++ + K +
Sbjct: 48 TRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQ 107
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ SG ++ L C ++ + + Q S + + + +
Sbjct: 108 PSPVVNSGGNVTLQC---DSQVAFDGFILCK-EGEDEHPQCLN-SQPHARGSSRAIFSVG 162
Query: 140 KAVTSDSGNYTC 151
S Y C
Sbjct: 163 PVSPSRRWWYRC 174
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 38.3 bits (89), Expect = 6e-04
Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 11/126 (8%)
Query: 31 DGSDEWTLKIASSQLRDSGTYECQVSTEPKIS-----IGYKLNVVISKAKIIGNSELYIK 85
+ ++ I S +G Y C + S + + SK + +
Sbjct: 53 EPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVT 112
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
SG + L C ++ P + + + Q + +S +
Sbjct: 113 SGKSVTLLC---QSRSPMDTFLLCK-ERAAHPLLC--LRSEHGAQQHQAEFPMSPVTSVH 166
Query: 146 SGNYTC 151
G Y C
Sbjct: 167 GGTYRC 172
Score = 29.4 bits (66), Expect = 0.61
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
I G+ + + C + + + + ++ + + +R I
Sbjct: 16 ISWGNSVTIWC---QGTLEAREYRLDKEESPAPWDRQNPLEPKNK-----ARFSIPSMTE 67
Query: 144 SDSGNYTCAPSSSDGAS 160
+G Y C S G S
Sbjct: 68 DYAGRYRCYYRSPVGWS 84
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 38.6 bits (90), Expect = 6e-04
Identities = 20/165 (12%), Positives = 46/165 (27%), Gaps = 33/165 (20%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST----------EPKISIGYKLNVVISK 73
+ + + ++L + + + Y C + + +K
Sbjct: 62 GYKASRPSQEN-FSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAK 120
Query: 74 AKIIGN--------SELYIKSGSDINLTCVVLETPDPPSFIYWYR------------GAN 113
L + G L C + + WY+ +
Sbjct: 121 KDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAF--DYFPWYQQFPGEGPALLISILS 178
Query: 114 VVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
V + + G ++ K+ + L I+ + DS Y CA ++
Sbjct: 179 VSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTNA 223
Score = 34.7 bits (80), Expect = 0.011
Identities = 9/58 (15%), Positives = 16/58 (27%)
Query: 103 PSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160
I++ GA + L++ A S + Y CA +
Sbjct: 42 LRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTN 99
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 38.8 bits (90), Expect = 7e-04
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 17/92 (18%)
Query: 84 IKSGSDINLTCVVLETP-----DPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVI 138
++ S+ CV+ E ++I W + Q RT+ V
Sbjct: 15 VQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQY-------TIINRTASSVT 67
Query: 139 SKAVTSDSGNYTC-----APSSSDGASVVVHV 165
+ S + TC + + +
Sbjct: 68 FTDIASLNIQLTCNILTFGQLEQNVYGITIIS 99
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 38.5 bits (90), Expect = 8e-04
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVI 138
++++ G + C DPP I W ++V+ G ++V + L +
Sbjct: 393 QQVFVDEGHTVQFVCRA--DGDPPPAILWLSPRKHLVSAKSNGRLTVFPD-----GTLEV 445
Query: 139 SKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
A D+G Y C +++ G +HV
Sbjct: 446 RYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 28.5 bits (64), Expect = 1.7
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 25 FTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
++ DG TL++ +Q++D+GTY C +
Sbjct: 434 RLTVFPDG----TLEVRYAQVQDNGTYLCIAA 461
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 37.9 bits (87), Expect = 0.001
Identities = 19/144 (13%), Positives = 34/144 (23%), Gaps = 34/144 (23%)
Query: 43 SQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTC-------- 94
S++ DSG Y C K + Y L + A +
Sbjct: 52 SEVEDSGYYVCYTPASNKNTYLY-LKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKA 110
Query: 95 --------------VVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISK 140
V+L I W + S+++ + +
Sbjct: 111 KNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDG-----------SIISPLNATKNTWNLGN 159
Query: 141 AVTSDSGNYTCAPSSSDGASVVVH 164
G Y C + + V+
Sbjct: 160 NAKDPRGTYQCQGAKETSNPLQVY 183
Score = 28.3 bits (62), Expect = 1.3
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 26 TSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
+ + + + T + ++ GTY+CQ + E
Sbjct: 143 SIISPLNATKNTWNLGNNAKDPRGTYQCQGAKE 175
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 37.7 bits (87), Expect = 0.001
Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 19/146 (13%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK---ISIGYKLNVVIS-------K 73
RF ++ +GS TLKI ++ DS Y C S G +L V+ +
Sbjct: 89 RFFAVRPEGSV-STLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPE 147
Query: 74 AKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR- 132
+ SE I L C+ + W+ V+ + E+
Sbjct: 148 VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALN 207
Query: 133 ------TSRLVISKAVTSDSGN-YTC 151
+SRL +S + N + C
Sbjct: 208 DSRYSLSSRLRVSATFWQNPRNHFRC 233
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 37.3 bits (86), Expect = 0.002
Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 16/143 (11%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS----TEPKISIGYKLNVVIS------- 72
RF+ D + +++ +L DS Y C S E G +L V+
Sbjct: 64 RFSVQQFDDYH-SEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPP 122
Query: 73 KAKIIGNSELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT 131
K + S+ I + L C+ PD +W G V + + +
Sbjct: 123 KVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYS 182
Query: 132 --RTSRLVISKAVTSDSGN-YTC 151
+SRL +S + N + C
Sbjct: 183 YSLSSRLRVSATFWHNPRNHFRC 205
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 36.1 bits (83), Expect = 0.002
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 14/84 (16%)
Query: 1 VSWIRKRDLHILTVGILTYTNDL-----------RFTSLHSDGSDEWTLKIASSQLRDSG 49
+W + + + I Y R + + ++ I + D+G
Sbjct: 35 FTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNG 94
Query: 50 TYECQVSTEPKISIGY---KLNVV 70
T+ C V P I L V
Sbjct: 95 TFTCDVKNPPDIVGKTSQVTLYVF 118
Score = 30.3 bits (68), Expect = 0.19
Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 20/85 (23%)
Query: 87 GSDINLTCVV--LETPDPPSFIYWYR-----GANVVNYSQRGGISVVTEKQTRTSR---- 135
GS + L C E W + + G + E T R
Sbjct: 14 GSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWV 73
Query: 136 ---------LVISKAVTSDSGNYTC 151
+VI SD+G +TC
Sbjct: 74 GDPSWKDGSIVIHNLDYSDNGTFTC 98
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 36.3 bits (84), Expect = 0.002
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59
D RF + ++ + I ++ DSG Y C +
Sbjct: 69 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLH 106
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 36.8 bits (84), Expect = 0.002
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 13/100 (13%)
Query: 79 NSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVI 138
+ + G+ LTC + S W + + T S L +
Sbjct: 14 EPVVAVALGASRQLTCRLACADRGASVQ-WRGLDTSLG---------AVQSDTGRSVLTV 63
Query: 139 SKAVTSDSGNYTCAPSSSDG---ASVVVHVLNGKKFNKLS 175
A S +G C S +V + V +S
Sbjct: 64 RNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVS 103
Score = 34.5 bits (78), Expect = 0.015
Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 9/136 (6%)
Query: 32 GSDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVVISKAKIIGNSELYIKSGSDI 90
+ L + ++ L +GT C S +L V ++ + + D
Sbjct: 55 DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALV--PGDP 112
Query: 91 NLTCVVLETP--DPPSF-IYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSG 147
+ C + DP + G + +Q G V E++ + VT
Sbjct: 113 EVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTER-- 170
Query: 148 NYTCAPSSSDGASVVV 163
+ P + +
Sbjct: 171 -WRLPPLGTPVPPALY 185
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 36.8 bits (85), Expect = 0.002
Identities = 24/137 (17%), Positives = 39/137 (28%), Gaps = 16/137 (11%)
Query: 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYK----LNVVI----SKA 74
LR H DG + I+ +GTY C S L++VI K
Sbjct: 50 LRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKP 109
Query: 75 KIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTS 134
+ + +G ++ L+C + + R K T
Sbjct: 110 SLSAQPGPTVLAGENVTLSC---SSRSSYDMYHLSR-----EGEAHERRLPAGPKVNGTF 161
Query: 135 RLVISKAVTSDSGNYTC 151
+ + G Y C
Sbjct: 162 QADFPLGPATHGGTYRC 178
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 36.7 bits (85), Expect = 0.002
Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 16/128 (12%)
Query: 29 HSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIG---YKLNVVISKAK--IIGNSELY 83
S D+ L I + + +G Y C S+ +L AK +
Sbjct: 45 SSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPA 104
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ SG D+ L C +T Y+ + Y + I
Sbjct: 105 VSSGGDVTLQC---QTRYGFDQFALYKEGDPAPYKNPERWY--------RASFPIITVTA 153
Query: 144 SDSGNYTC 151
+ SG Y C
Sbjct: 154 AHSGTYRC 161
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 36.5 bits (84), Expect = 0.003
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 15/97 (15%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR------------GANVVNYSQRGGISVVT 127
L I+ G + + C + + WYR + G + V
Sbjct: 9 QALSIQEGENATMNC---SYKTSINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTL 65
Query: 128 EKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVH 164
+ ++S L+I+ + +D+ +Y CA ++ G +
Sbjct: 66 DTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIF 102
Score = 33.5 bits (76), Expect = 0.028
Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 14/145 (9%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISI-----GYKLNVVISKAKIIG 78
R +L I +S+ D+ +Y C T G +L V+ +
Sbjct: 60 RLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIFGTGTRLKVLANIQNP-- 117
Query: 79 NSELYIKSGSDINLTCVVLETPDPP-SFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLV 137
+ +Y S + V L T + + + ++V V + ++ +
Sbjct: 118 DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITD-----KTVLDMRSMDFKSN 172
Query: 138 ISKAVTSDSGNYTCAPSSSDGASVV 162
+ A ++ S ++ CA + ++
Sbjct: 173 SAVAWSNKS-DFACANAFNNSIIPE 196
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 37.0 bits (85), Expect = 0.003
Identities = 31/172 (18%), Positives = 54/172 (31%), Gaps = 14/172 (8%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
++W D ++ V + T + + L S S L ++ TY CQV+ +
Sbjct: 43 ITW--LEDGQVMDVDLSTAS-TTQEGELASTQS---ELTLSQKHWLSDRTYTCQVTYQGH 96
Query: 61 ISIGYKLNVVISKAKIIGN-----SELYIKSGSDINLTCVV--LETPDPPSFIYWYR-GA 112
S + + S + +TC+V L + W R
Sbjct: 97 TFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASG 156
Query: 113 NVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVH 164
VN+S R T TS L + + Y C + ++
Sbjct: 157 KPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMR 208
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 36.6 bits (84), Expect = 0.003
Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 10/137 (7%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELY 83
S S + +L++ QL ++G Y C+V P + G V++ +
Sbjct: 70 AIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQV 129
Query: 84 IKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR--------TS 134
++ C P+ + I W + + V+T + TS
Sbjct: 130 GMKENEDKYMCESSGFYPEAIN-ITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTS 188
Query: 135 RLVISKAVTSDSGNYTC 151
L ++ + Y C
Sbjct: 189 CLKLNSSQEDPGTVYQC 205
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 34.9 bits (80), Expect = 0.004
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEW---TLKIASSQLRDSGTYECQVST 57
V+W R + V T R L S L I + D+ Y C+V
Sbjct: 43 VTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEV 102
Query: 58 EPKISI---GYKLNV 69
G +L V
Sbjct: 103 LGLGVGTGNGTRLVV 117
Score = 32.6 bits (74), Expect = 0.031
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 12/84 (14%)
Query: 81 ELYIKSGSDINLTCVVLETPDPPSF--IYWYR-----GANVVNYSQRGGISVVTEKQTRT 133
E+ GS L C + + + W+R G V N + + +R
Sbjct: 16 EIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRF 75
Query: 134 SR-----LVISKAVTSDSGNYTCA 152
L I D+ Y C
Sbjct: 76 LHDHQAELHIRDVRGHDASIYVCR 99
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 36.1 bits (83), Expect = 0.004
Identities = 23/140 (16%), Positives = 37/140 (26%), Gaps = 22/140 (15%)
Query: 23 LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQ--------VSTEPKISIGYKLNVVISKA 74
L H DG + I +GTY C + P S + +
Sbjct: 49 LHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAP--SDPLDIVITGLYE 106
Query: 75 K--IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQT 131
K + + +G + L+C + + R G G K
Sbjct: 107 KPSLSAQPGPTVLAGESVTLSC---SSRSSYDMYHLSREGEAHERRFSAG------PKVN 157
Query: 132 RTSRLVISKAVTSDSGNYTC 151
T + + G Y C
Sbjct: 158 GTFQADFPLGPATHGGTYRC 177
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 34.9 bits (80), Expect = 0.004
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 2 SWIRKRDLHILTVGI-LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
++ I T G +TY R+ + +L I +S DSG Y C+V
Sbjct: 38 PSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGW 97
Query: 61 ISIGYK-LNVVISKAKI 76
+ ++ + +
Sbjct: 98 FNDQKVTFSLQVKPELV 114
Score = 34.5 bits (79), Expect = 0.006
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 16/81 (19%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGA---------------NVVNYSQRGGISVVTEKQT 131
G + L C T + W RG + V Y + ++
Sbjct: 12 GHPVTLPCT-YSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISE 70
Query: 132 RTSRLVISKAVTSDSGNYTCA 152
L I +V SDSG Y C
Sbjct: 71 GDVSLTIENSVESDSGLYCCR 91
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system;
2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Length = 112
Score = 34.5 bits (80), Expect = 0.004
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
F + ++ + + L+ AS Q DS Y C +S
Sbjct: 60 GFEATYNKEATSFHLQKASVQESDSAVYYCALS 92
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 35.3 bits (81), Expect = 0.006
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 14/86 (16%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYR------------GANVVNYSQRGGISVVTEKQTRTS 134
G ++ L C T + W+R + G ++ +K + S
Sbjct: 15 GENLVLNCSF--TDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRS 72
Query: 135 RLVISKAVTSDSGNYTCAPSSSDGAS 160
L I+ + DS Y CA + G S
Sbjct: 73 TLYIAASQPGDSATYLCAVRPTSGGS 98
Score = 33.4 bits (76), Expect = 0.028
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
R + S TL IA+SQ DS TY C V
Sbjct: 60 RLNASLDKSSGRSTLYIAASQPGDSATYLCAVR 92
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 34.5 bits (79), Expect = 0.006
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 1 VSWIRKRDLHILTVGILTYTNDL--------RFTSLHSDGSDEWTLKIASSQLRDSGTYE 52
+ W + L T++ R+ + +L I + L D GTY
Sbjct: 29 MCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYC 88
Query: 53 CQVSTEP 59
C++
Sbjct: 89 CRIQFPG 95
Score = 33.7 bits (77), Expect = 0.010
Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 16/81 (19%)
Query: 87 GSDINLTCVV-LETPDPPSFIYWYRGA---------------NVVNYSQRGGISVVTEKQ 130
G + L C L T + W +G V Y + + +
Sbjct: 9 GKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLN 68
Query: 131 TRTSRLVISKAVTSDSGNYTC 151
L+I D G Y C
Sbjct: 69 KGDVSLIIKNVTLDDHGTYCC 89
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 35.4 bits (81), Expect = 0.006
Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 14/91 (15%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR------------GANVVNYSQRGGISVVT 127
L I G + L C + WY+ N G +
Sbjct: 11 QSLIILEGKNCTLQCN-YTVSPFSNL-RWYKQDTGRGPVSLTIMTFSENTKSNGRYTATL 68
Query: 128 EKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
+ T+ S L I+ + SDS +Y C S
Sbjct: 69 DADTKQSSLHITASQLSDSASYICVVSDRGS 99
Score = 31.2 bits (70), Expect = 0.18
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
R+T+ + + +L I +SQL DS +Y C VS
Sbjct: 63 RYTATLDADTKQSSLHITASQLSDSASYICVVS 95
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 34.9 bits (80), Expect = 0.008
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST-EPKISIGYKLNV 69
RFT + +++L IA SQ DS TY C S G +L V
Sbjct: 60 RFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIFFGDGTQLVV 106
Score = 30.2 bits (68), Expect = 0.35
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 14/78 (17%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYR------------GANVVNYSQRGGISVVTEKQTRTS 134
G L C + WY V N + G ++ K+ +
Sbjct: 15 GETAILNCSY--EDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKF 72
Query: 135 RLVISKAVTSDSGNYTCA 152
L I+ + DS Y CA
Sbjct: 73 SLHIADSQPGDSATYFCA 90
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 34.8 bits (80), Expect = 0.009
Identities = 17/126 (13%), Positives = 34/126 (26%), Gaps = 16/126 (12%)
Query: 31 DGSDEWTLKIASSQLRDSGTYECQVSTEPKISIG-YKLNVVI----SKAKIIGNSELYIK 85
+ ++ I R +G Y C S L++V+ + + +
Sbjct: 52 ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVI 111
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
SG + C S + + + G + + T+
Sbjct: 112 SGEKVTFYC---RLDTATSMFLLLKEGRSSHVQRGYGKV--------QAEFPLGPVTTAH 160
Query: 146 SGNYTC 151
G Y C
Sbjct: 161 RGTYRC 166
Score = 29.4 bits (66), Expect = 0.56
Identities = 10/103 (9%), Positives = 26/103 (25%), Gaps = 13/103 (12%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ + + C + + ++ + + + I +
Sbjct: 15 VPKEKQVTICC---QGNYGAVEYQLHFEGSLFAVDRPKPPERIN-----KVKFYIPDMNS 66
Query: 144 SDSGNYTCAPSSSDGAS-----VVVHVLNGKKFNKLSSLRGRV 181
+G Y+C + S + + V LS G
Sbjct: 67 RMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE 109
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 34.1 bits (78), Expect = 0.009
Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 20/99 (20%)
Query: 87 GSDINLTCVVLETPDPPSF-IYWYRG--ANVVNYSQRGGISVVTEKQTRTSR-------- 135
G + L C + + + WYR + VV+ + G + R
Sbjct: 21 GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESI 80
Query: 136 ------LVISKAVTSDSGNYTCA---PSSSDGASVVVHV 165
L I SD G YTC S + A+V + V
Sbjct: 81 GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119
Score = 29.9 bits (67), Expect = 0.27
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 36 WTLKIASSQLRDSGTYECQVSTEP 59
L+I + + D G Y C
Sbjct: 85 VALRIQNVRFSDEGGYTCFFRDHS 108
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 34.9 bits (80), Expect = 0.009
Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 20/128 (15%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPK------------ISIGYKLNVVISKAKIIGNSELYI 84
TL I +QL DSGTY C T G ++ V S +
Sbjct: 72 TLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIM 131
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
K+G+ N+ C+V + I +V ++V + S + + +
Sbjct: 132 KNGT--NVACLVKDFYPKEVTISLRSSKKIVE----FDPAIVISPSGKYSAVKLGQ--YG 183
Query: 145 DSGNYTCA 152
DS + TC+
Sbjct: 184 DSNSVTCS 191
Score = 27.6 bits (61), Expect = 2.7
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 16/93 (17%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR------------GANVVNYSQRGGISVVT 127
S L + G+D L C + W+R A+ + R + +
Sbjct: 9 SALSLHEGTDSALRC---NFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDS 65
Query: 128 EKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160
+++ S L I A DSG Y CA + +
Sbjct: 66 KERR-YSTLHIRDAQLEDSGTYFCAADTWHISE 97
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 34.8 bits (80), Expect = 0.010
Identities = 15/127 (11%), Positives = 38/127 (29%), Gaps = 12/127 (9%)
Query: 31 DGSDEWTLKIASSQLRDSGTYECQVSTEPKIS-----IGYKLNVVISKAKIIGNSELYIK 85
+ ++ I S +G Y C + S + + +K + +
Sbjct: 53 EPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVT 112
Query: 86 SGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
SG ++ L C + G + ++++ ++ + Q + + S
Sbjct: 113 SGENVTLQC---GSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQ---ALFPVGPVTPS 166
Query: 145 DSGNYTC 151
C
Sbjct: 167 HRWMLRC 173
Score = 29.5 bits (66), Expect = 0.57
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 8/77 (10%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
I G+ + + C + + + + + + +R I
Sbjct: 16 ISRGNSVTIRC---QGTLEAQEYRLVKEGSPEPWDTQN-----PLEPKNKARFSIPSMTE 67
Query: 144 SDSGNYTCAPSSSDGAS 160
+G Y C S G S
Sbjct: 68 HHAGRYRCYYYSPAGWS 84
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 34.7 bits (79), Expect = 0.013
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIG 64
R+++ + TL I ++ L D+ TY C V G
Sbjct: 61 RYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFG 101
Score = 32.4 bits (73), Expect = 0.063
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR------------GANVVNYSQRGGISVVT 127
L ++ G + L C TPD + WY+ + + + G S
Sbjct: 9 QSLVVRQGENCVLQCNYSVTPDN--HLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATL 66
Query: 128 EKQTRTSRLVISKAVTSDSGNYTCA 152
+K + S L I+ + D+ Y C
Sbjct: 67 DKDAKHSTLHITATLLDDTATYFCV 91
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 33.4 bits (76), Expect = 0.015
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 17/81 (20%)
Query: 87 GSDINLTCVVLETPDPPS-FIYWYR---------------GANVVNYSQRGGISVVTEKQ 130
D+ + C+ + W G ++ RG + V +
Sbjct: 16 KGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVP 75
Query: 131 TRTSRLVISKAVTSDSGNYTC 151
S L I+ D +YTC
Sbjct: 76 GDVS-LQINTLQMDDRNHYTC 95
Score = 30.7 bits (69), Expect = 0.15
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRF-------TSLHSDGSDEWTLKIASSQLRDSGTYEC 53
V W+ + +T+ + T D + + +L+I + Q+ D Y C
Sbjct: 36 VKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTC 95
Query: 54 QVSTEP 59
+V+ +
Sbjct: 96 EVTWQT 101
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 33.4 bits (76), Expect = 0.015
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 18 TYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKIS-IGYKLNVVISKAKI 76
++T L E +L I+++ DSG Y C++ + + + + + +A +
Sbjct: 55 ISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRALV 114
Score = 33.4 bits (76), Expect = 0.016
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 15/80 (18%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYS-----QRGGISVVTEKQTRTS------- 134
G + L C L + + W +G+ + + G +++ K T+ +
Sbjct: 11 GQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQF 70
Query: 135 ---RLVISKAVTSDSGNYTC 151
L IS DSG Y C
Sbjct: 71 GEVSLTISNTNRGDSGVYCC 90
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 33.0 bits (76), Expect = 0.018
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 37 TLKIASSQLRDSGTYECQVST 57
TL I +QL DSGTY C
Sbjct: 72 TLHIRDAQLEDSGTYFCAAEA 92
Score = 30.7 bits (70), Expect = 0.11
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 103 PSFIYWYRGANVVNYSQRGGISV-VTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159
+++ + G + ++ R S L I A DSG Y CA +S G+
Sbjct: 43 LISLFYLASGT----KENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEASSGS 96
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 34.5 bits (79), Expect = 0.019
Identities = 25/167 (14%), Positives = 47/167 (28%), Gaps = 21/167 (12%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEW---TLKIASSQLRDSGTYECQV-- 55
+ W R + + R T++ E ++ I++ D+GTY C
Sbjct: 36 IQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFR 95
Query: 56 ----STEPKISIGYKL-NVVISKAKIIGNSELYIKSGSDINLTCVVLE-TPDPPSFIYWY 109
TE K G +L A ++ ++ TC +P + W+
Sbjct: 96 KGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLK-WF 154
Query: 110 RGANVVNYSQRGGISVVTEKQ-----TRTSRLVISKAVTSDSGNYTC 151
+ N + V + S + C
Sbjct: 155 KNGN----ELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVIC 197
Score = 29.9 bits (67), Expect = 0.52
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGAN-------VVNYSQRGGISVVTE---K 129
+ + +G L C V P I W+RGA ++ V+E +
Sbjct: 11 KSVSVAAGESAILHCTVTS-LIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKR 69
Query: 130 QTRTSRLVISKAVTSDSGNYTCA 152
+ + IS +D+G Y C
Sbjct: 70 ENMDFSISISNITPADAGTYYCV 92
Score = 28.0 bits (62), Expect = 2.4
Identities = 18/124 (14%), Positives = 42/124 (33%), Gaps = 13/124 (10%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELY----IKSGSDINL 92
T K+ ++ C+V+ + +S+ + + +++ + +N+
Sbjct: 181 TAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNV 240
Query: 93 TCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQ-----TRTSRLVISKAVTSDSG 147
TC V + + W NV R + + S L+++ + D
Sbjct: 241 TCQVRKFYPQRLQLTWLENGNVS----RTETASTVTENKDGTYNWMSWLLVNVSAHRDDV 296
Query: 148 NYTC 151
TC
Sbjct: 297 KLTC 300
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 33.0 bits (75), Expect = 0.020
Identities = 13/80 (16%), Positives = 19/80 (23%), Gaps = 15/80 (18%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGA---------------NVVNYSQRGGISVVTEKQT 131
G + L C+ + W G V + + +
Sbjct: 12 GHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISE 71
Query: 132 RTSRLVISKAVTSDSGNYTC 151
L I V D G Y C
Sbjct: 72 GNVSLTIENTVVGDGGPYCC 91
Score = 30.7 bits (69), Expect = 0.14
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
+T+ + R+ + +L I ++ + D G Y C V
Sbjct: 55 VTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVV 93
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 33.2 bits (76), Expect = 0.020
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
R+ + GS ++L+I+ ++ DSGTY+CQ I
Sbjct: 54 RYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYVFFAEDVGSNKGAI 101
Score = 25.5 bits (56), Expect = 8.5
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYR----GANVVNYSQRGGISVVTEKQTRTSRLVISKAV 142
G + + CV+ + WYR N + S G K +++ L IS
Sbjct: 15 GESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLR 74
Query: 143 TSDSGNYTCAPSSS 156
DSG Y C
Sbjct: 75 VEDSGTYKCQAFYV 88
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 33.9 bits (77), Expect = 0.020
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 13/95 (13%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR---GANVV-------NYSQRGGISVVTEK 129
L + G+D L C + W++ ++ + G +
Sbjct: 9 PALSLYEGADSGLRC---NFSTTMKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNS 65
Query: 130 QTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVH 164
+ R S L I A DSG Y CA + ++
Sbjct: 66 KERYSTLHIKDAQLEDSGTYFCAAEDGGSGNKLIF 100
Score = 30.4 bits (68), Expect = 0.32
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57
R S + TL I +QL DSGTY C
Sbjct: 58 RLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAED 91
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 33.0 bits (75), Expect = 0.021
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 20 TNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP--KISIGYKLNV 69
+ + TL + + D G Y C+ +T P + L V
Sbjct: 77 SAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 29.2 bits (65), Expect = 0.52
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 29/94 (30%)
Query: 87 GSDINLTCVVLETPDPPSF--IYWYR------GANVVNYSQRGGISV------------- 125
G + L C +L + W R NV + + G S
Sbjct: 17 GGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFV 76
Query: 126 --------VTEKQTRTSRLVISKAVTSDSGNYTC 151
TE + + + L + D GNYTC
Sbjct: 77 SAKQSTGQDTEAELQDATLALHGLTVEDEGNYTC 110
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 33.9 bits (77), Expect = 0.022
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR-------------GANVVNYSQRGGISVV 126
+E+ + D+ L CV ET D +++WY+ + G S
Sbjct: 11 TEISVVEKEDVTLDCVY-ETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWN 69
Query: 127 TEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
+K T + I+ + DS Y CA S
Sbjct: 70 FQKSTSSFNFTITASQVVDSAVYFCALSGFYN 101
Score = 31.2 bits (70), Expect = 0.15
Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 10/138 (7%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP---KISIGYKLNVVISKAKIIGNS 80
R++ + + I +SQ+ DS Y C +S K+ G + + +
Sbjct: 65 RYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNPDP 124
Query: 81 ELYIKSGSDINLTCVVLETP-DPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+Y S + V L T D + + + ++V + + +++ V
Sbjct: 125 AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITD--KCVLDMRSMDFKSNSAVA- 181
Query: 140 KAVTSDSGNYTCAPSSSD 157
S+ ++ CA + ++
Sbjct: 182 ---WSNKSDFACANAFNN 196
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 33.8 bits (77), Expect = 0.022
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIG 64
R ++ + L I SQ DS TY C +T + G
Sbjct: 60 RISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFG 100
Score = 29.1 bits (65), Expect = 0.71
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 104 SFIYWYR------------GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
++WYR + ++G IS + S L I + DS Y C
Sbjct: 30 YALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQPEDSATYLC 89
Query: 152 APSSSD 157
A ++ +
Sbjct: 90 ARNTGN 95
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 34.1 bits (78), Expect = 0.027
Identities = 35/166 (21%), Positives = 54/166 (32%), Gaps = 14/166 (8%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV----- 55
VSW LT G+ T+ L+ + L+S S + + SS L + TY C V
Sbjct: 253 VSWNSGA----LTSGVHTFPAVLQSSGLYSLSS---VVTVPSSSL-GTQTYICNVNHKPS 304
Query: 56 STEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR-GANV 114
+T+ + + L I ++ V + DP WY G V
Sbjct: 305 NTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQV 364
Query: 115 VNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160
N + S L + D Y C S+ +
Sbjct: 365 HNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 410
Score = 32.5 bits (74), Expect = 0.077
Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 17/167 (10%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLH-----SDGSDEWTLKIASSQLRDSGTYECQV 55
V+W ++ + L Y + +R + + S +L I+ + D Y C
Sbjct: 32 VNWYQQLPGMAPKL--LIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCAS 89
Query: 56 --STEPKISIGYKLNVVISKAKIIGNSELYI------KSGSDINLTCVVLE-TPDPPSFI 106
S++ G V + + + L C++ + P +
Sbjct: 90 WNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVA 149
Query: 107 YWYRGANVVNYSQRGGISVVTE-KQTRTSRLVISKAVTSDSGNYTCA 152
+ G+ V + S + K +S L ++ +Y+C
Sbjct: 150 WKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQ 196
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1,
costimulatory, immune system; 2.10A {Homo sapiens}
Length = 129
Score = 32.7 bits (75), Expect = 0.027
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 24 RFT-SLHSDGSDEWTLKIASSQLRDSGTYECQV-STEPKISIG 64
RF + +G D + + + ++ DSGTY C S PK+ I
Sbjct: 63 RFRVTQLPNGRD-FHMSVVRARRNDSGTYLCGAISLAPKLQIK 104
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 33.4 bits (76), Expect = 0.027
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 11/131 (8%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELY 83
F + + G+ + L+ S Q DS Y C ++ G + + + +Y
Sbjct: 60 GFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDPAVY 119
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGI---SVVTEKQTRTSRLVISK 140
S + V L T NV V + ++ + S
Sbjct: 120 QLRDSKSSDKSVCLFTDFDSQ-------TNVSQSKDSDVYITDKCVLDMRSMDFKSN-SA 171
Query: 141 AVTSDSGNYTC 151
S+ ++ C
Sbjct: 172 VAWSNKSDFAC 182
Score = 26.9 bits (59), Expect = 4.6
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 12/65 (18%)
Query: 104 SFIYWYR------------GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
++WY N G +K T + L + DS Y C
Sbjct: 30 PTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYC 89
Query: 152 APSSS 156
A +S
Sbjct: 90 AANSG 94
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 32.1 bits (73), Expect = 0.039
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
R + + L + + DSGTY +
Sbjct: 67 RAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS 101
Score = 31.4 bits (71), Expect = 0.083
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 17/83 (20%)
Query: 87 GSDINLTCVV----LETPDPPSFIYWYRG-------------ANVVNYSQRGGISVVTEK 129
GS + + C+ WY +V+ RG ++
Sbjct: 15 GSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNM 74
Query: 130 QTRTSRLVISKAVTSDSGNYTCA 152
+ L++ DSG Y
Sbjct: 75 DHKVCNLLLKDLKPEDSGTYNFR 97
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 32.7 bits (74), Expect = 0.055
Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 21/148 (14%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQV-----STEPKISIGYKLNVVISKAK--- 75
+F+ DGS +TLKI + L DS Y C E G +L V+
Sbjct: 65 QFSVERPDGSY-FTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFP 123
Query: 76 ----IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT 131
+ SE I L C+ + W+ V+ + E+
Sbjct: 124 PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPA 183
Query: 132 R-------TSRLVISKAVTSDSGN-YTC 151
+SRL +S + N + C
Sbjct: 184 LNDSRYALSSRLRVSATFWQNPRNHFRC 211
Score = 26.5 bits (58), Expect = 6.6
Identities = 15/82 (18%), Positives = 20/82 (24%), Gaps = 6/82 (7%)
Query: 103 PSFIYWYRGANVVNYSQRGGIS---VVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGA 159
F+ + V+ S V L I DS Y CA S
Sbjct: 44 MEFLVNFYNGKVMEKS--KLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGA- 100
Query: 160 SVVVHVLNGKKFNKLSSLRGRV 181
G + L L+
Sbjct: 101 YAEQFFGPGTRLTVLEDLKNVF 122
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 32.7 bits (74), Expect = 0.055
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 15/135 (11%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE----PKISIGYKLNVVISKAKIIGN 79
F + S + L+ +S+QL DS Y C + K+ G ++ +
Sbjct: 61 GFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVVPNIQNPE 120
Query: 80 SELYIKSGSDINLTCVVLETP-DPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVI 138
+Y + + L T D + + V + + S+
Sbjct: 121 PAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITD-----KTVLDMKAMDSK--- 172
Query: 139 SKAVT--SDSGNYTC 151
S S+ ++TC
Sbjct: 173 SNGAIAWSNQTSFTC 187
Score = 30.0 bits (67), Expect = 0.34
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 14/105 (13%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR------------GANVVNYSQRGGISVVT 127
+ + G + L C ++ P +WY + G
Sbjct: 9 GLVTLTEGLPVMLNCTY-QSTYSPFL-FWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATL 66
Query: 128 EKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHVLNGKKFN 172
K + + L S A SDS Y CA + + + G +
Sbjct: 67 HKSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLS 111
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 32.8 bits (75), Expect = 0.057
Identities = 38/187 (20%), Positives = 55/187 (29%), Gaps = 39/187 (20%)
Query: 9 LHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGY--- 65
L + + + F + S + L+ AS DS Y C VS + S
Sbjct: 50 LKYYSGDPVVQGVN-GFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGK 108
Query: 66 --KLNVVISKAKIIGNSELYIKSG---SDINLT----CVVLETPDPP----------SFI 106
KL V G SG S+ +T V T + +++
Sbjct: 109 GAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNSHNYM 168
Query: 107 YWYR---------------GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
YWYR N+ G T L + A S + Y C
Sbjct: 169 YWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYK-ATRTTQEDFFLTLESASPSQTSLYFC 227
Query: 152 APSSSDG 158
A S + G
Sbjct: 228 ASSDAPG 234
Score = 27.4 bits (61), Expect = 3.3
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 106 IYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVV 163
+ +Y G VV G K + L + SDS Y CA S+ S +
Sbjct: 50 LKYYSGDPVVQGVN--GFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLS 105
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 33.1 bits (75), Expect = 0.059
Identities = 12/132 (9%), Positives = 35/132 (26%), Gaps = 8/132 (6%)
Query: 29 HSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVIS------KAKIIGNSEL 82
+ T + G + + + + ++ +
Sbjct: 248 EGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQ 307
Query: 83 YIKSGSDINLTCVVLETPDPPSFIYWYR--GANVVNYSQRGGISVVTEKQTRTSRLVISK 140
+ TC V+ + + + W + Q++ SRL + +
Sbjct: 308 DLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPR 367
Query: 141 AVTSDSGNYTCA 152
++ + + TC
Sbjct: 368 SLWNAGTSVTCT 379
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 32.3 bits (73), Expect = 0.063
Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 8/130 (6%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYEC-QVSTEPKISIGYKLNVVISKAKIIGNSEL 82
R T D + +L I ++Q D+G Y C ++ + G + + + +
Sbjct: 60 RLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSVKPNIQNPDPAV 119
Query: 83 YIKSGSDINLTCVVLETP-DPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141
Y S + V L T D + + + ++V V + ++ + S
Sbjct: 120 YQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITD-----KTVLDMRSMDFK-SNSAV 173
Query: 142 VTSDSGNYTC 151
S+ ++ C
Sbjct: 174 AWSNKSDFAC 183
Score = 32.3 bits (73), Expect = 0.070
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR------------GANVVNYSQRGGISVVT 127
L I+ G ++ + C + S + WYR + ++
Sbjct: 9 QFLSIQEGENLTVYC---NSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQF 65
Query: 128 EKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
+ S L I+ A D+G Y CA + S G
Sbjct: 66 GDARKDSSLHITAAQPGDTGLYLCAGAGSQG 96
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 32.2 bits (73), Expect = 0.063
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57
RF+S S L + Q++DS +Y C V
Sbjct: 58 RFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQA 91
Score = 31.4 bits (71), Expect = 0.14
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYR-----------GANVVNYSQRGGISVVTEKQTRTSR 135
G+ + + C +T +WY+ + ++G S + S
Sbjct: 14 GAIVQINCT-YQTSGFNGL-FWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSY 71
Query: 136 LVISKAVTSDSGNYTCAPSSSDGASVVVH 164
L++ + DS +Y CA +S G+ +
Sbjct: 72 LLLKELQMKDSASYLCAVQASGGSYIPTF 100
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 31.8 bits (71), Expect = 0.064
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR--GANVV--NYSQRGGISVVTE 128
+ I NS+ +G + C V P+ + W + G V + S
Sbjct: 15 QLNIKRNSKHSAWTGELFKIECPVKYCVHRPN-VTWCKHNGTIWVPLEVGPQLYTSWEEN 73
Query: 129 KQTRTSRLVISKAVTSDSGNYTCAPSSSDGA----SVVVHV 165
+ L SD+G+Y+C+ + + SV +HV
Sbjct: 74 RSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV 114
Score = 27.5 bits (60), Expect = 1.9
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 38 LKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAK 75
L L D+G+Y C + ++ + + + + +
Sbjct: 81 LHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHVRERS 118
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 32.6 bits (74), Expect = 0.068
Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 31/173 (17%)
Query: 1 VSWIRKR-------DLHILTVGILTYTND---LRFTSLHSDGSDEWTLKIASSQLRDSGT 50
+ WI++R +I + T N + T S+ + ++S DS
Sbjct: 33 IHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSDDSAV 92
Query: 51 YECQVSTEPKISIGYKLNVVISKAKIIGNSELYI------KSGSDINLTCVVLE-TPDPP 103
Y C E G V +S AK S + ++ S + L C+V P+P
Sbjct: 93 YYCVREGEVPYW-GQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPV 151
Query: 104 SFIYWYRGA---NVVNY--SQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
+ W G+ V + + T +S + + + S TC
Sbjct: 152 TVT-WNSGSLSSGVHTFPAVLQSD------LYTLSSSVTVP-SSPRPSETVTC 196
Score = 26.4 bits (58), Expect = 8.9
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 16/160 (10%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
V + D + T + +F S S L I + ++C+V++
Sbjct: 264 VQFSWFVDNVEVHTAQ-TQPREEQFNSTFRVVS---ALPIMHQDWLNGKEFKCRVNSAAF 319
Query: 61 ISIGYKLNVVISKAK--------IIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR-G 111
+ ISK K + ++LTC++ + + W G
Sbjct: 320 ---PAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDG 376
Query: 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
NY I S+L + K+ +TC
Sbjct: 377 QAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTC 416
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 31.8 bits (72), Expect = 0.068
Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 25/105 (23%)
Query: 87 GSDINLTCVVLETPDPPSF--IYWYRGAN---------VVNYSQRGGISVVTEKQTRTSR 135
G L C +P+ I W ++ + + + R
Sbjct: 20 GETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHF 79
Query: 136 -----------LVISKAVTSDSGNYTCA---PSSSDGASVVVHVL 166
+ ++ SD G Y C + + VL
Sbjct: 80 TSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124
Score = 31.0 bits (70), Expect = 0.11
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGY-KLNVVI 71
++ + + QL D GTY+C+V P ++ L V++
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 31.2 bits (71), Expect = 0.070
Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
R + + +T+ + ++ D+G Y C ++ + +K+ V I
Sbjct: 62 RVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITK-GGLDPMFKVTVNIGPV 111
Score = 28.9 bits (65), Expect = 0.46
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 13/78 (16%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRG------------ANVVNYSQRGGISVVTEKQTRTS 134
+ + C + YW +G ++ +S+ ++
Sbjct: 16 QGSLTVQCRY-TSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIF 74
Query: 135 RLVISKAVTSDSGNYTCA 152
+ + SD+G Y C
Sbjct: 75 TVTMEDLRMSDAGIYWCG 92
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N
2i26_N
Length = 121
Score = 31.5 bits (72), Expect = 0.071
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57
R+ + GS ++L+I ++DSGTY C+ +
Sbjct: 54 RYVETVNRGSKSFSLRINDLTVKDSGTYRCKPES 87
Score = 28.8 bits (65), Expect = 0.62
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 92 LTCVVLETPDPPSFIYWYR----GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSG 147
+ CVV ++ S YWYR N + S G + +++ L I+ DSG
Sbjct: 20 INCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKSFSLRINDLTVKDSG 79
Query: 148 NYTCAPSSSDGAS 160
Y C P S G+
Sbjct: 80 TYRCKPESRYGSY 92
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 31.5 bits (72), Expect = 0.071
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
RF+ H + L I+ + DS TY C +
Sbjct: 64 RFSVKHILTQKAFHLVISPVRTEDSATYYCAFT 96
Score = 25.7 bits (57), Expect = 6.1
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 16/88 (18%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYR-------------GANVVNY--SQRGGISVVTEKQT 131
GS++ L C +T ++WYR + +G SV
Sbjct: 15 GSEVVLLCTY-DTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQ 73
Query: 132 RTSRLVISKAVTSDSGNYTCAPSSSDGA 159
+ LVIS T DS Y CA +
Sbjct: 74 KAFHLVISPVRTEDSATYYCAFTLPPPT 101
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 32.4 bits (74), Expect = 0.077
Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 12/153 (7%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGY--KLNVVISKAK----II 77
RFT S G+D +TLKI+ + D G Y C + + G KL + + A I
Sbjct: 103 RFTGSGS-GTD-FTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIF 160
Query: 78 GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR---TS 134
S + SG ++ C + + W + + K + +S
Sbjct: 161 PPSSEQLTSGG-ASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSS 219
Query: 135 RLVISKAVTSDSGNYTCAPSSSDGASVVVHVLN 167
L ++K +YTC + S +V N
Sbjct: 220 TLTLTKDEYERHNSYTCEATHKTSTSPIVKSFN 252
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold,
toxin-immune system complex; 2.95A {Rattus norvegicus}
Length = 125
Score = 31.4 bits (72), Expect = 0.080
Identities = 3/33 (9%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
+ + + ++L + + + Y C
Sbjct: 68 GYKASRPSQEN-FSLILELATPSQTSVYFCASG 99
Score = 25.6 bits (57), Expect = 6.9
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 18/93 (19%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR---G--------ANVVNYSQRGGI----S 124
+G + L+C +T + +YWYR G ++ + ++G I
Sbjct: 13 RNKVAVTGEKVTLSCK--QTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYK 70
Query: 125 VVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157
Q L++ A S + Y CA
Sbjct: 71 ASRPSQEN-FSLILELATPSQTSVYFCASGGGG 102
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 32.2 bits (73), Expect = 0.087
Identities = 14/79 (17%), Positives = 22/79 (27%)
Query: 103 PSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVV 162
I++ GA + L++ A S + Y CA G+
Sbjct: 41 LRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAE 100
Query: 163 VHVLNGKKFNKLSSLRGRV 181
G + L LR
Sbjct: 101 QFFGPGTRLTVLEDLRQVT 119
Score = 26.8 bits (59), Expect = 4.4
Identities = 20/145 (13%), Positives = 39/145 (26%), Gaps = 18/145 (12%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGY-------------KLNVV 70
+ + ++L + + + Y C V
Sbjct: 61 GYKASRPSQEQ-FSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVT 119
Query: 71 ISKAKIIGNSELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEK 129
K + S+ I + L C+ PD +W G V + +
Sbjct: 120 PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESN 179
Query: 130 QT--RTSRLVISKAVTSDSGN-YTC 151
+ +SRL +S + N + C
Sbjct: 180 YSYCLSSRLRVSATFWHNPRNHFRC 204
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 31.9 bits (72), Expect = 0.088
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 30 SDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
D ++++ L + + G Y C V + + + V+
Sbjct: 84 RDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVN 128
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 32.2 bits (73), Expect = 0.090
Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 23/150 (15%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGY-------KLNVVISKAKI 76
+F H+ + TL + S+ DS Y C + +L V +
Sbjct: 89 KFLINHASLTL-STLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNV 147
Query: 77 IGN-------SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK 129
SE I L C+ + W+ V+ + E+
Sbjct: 148 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 207
Query: 130 QTR-------TSRLVISKAVTSDSGN-YTC 151
+SRL +S + N + C
Sbjct: 208 PALNDSRYSLSSRLRVSATFWQNPRNHFRC 237
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 31.9 bits (72), Expect = 0.095
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 15/103 (14%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR-------------GANVVNYSQRGGISVV 126
+ + + G+ + L C + P +++WY + G
Sbjct: 17 ARVTVSEGASLQLRCKYSYSATP--YLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAE 74
Query: 127 TEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHVLNGK 169
K + L + SDS Y CA S+ S + K
Sbjct: 75 FSKSDSSFHLRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAK 117
Score = 30.4 bits (68), Expect = 0.32
Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 10/132 (7%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP---KISIGYKLNVVISKAKIIGNS 80
F + S + L+ AS DS Y C VS + K+S G + +S +
Sbjct: 70 GFEAEFSKSDSSFHLRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPNIQNPDP 129
Query: 81 ELYIKSGSDINLTCVVLETP-DPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+Y S + V L T D + + + ++V V + ++ + S
Sbjct: 130 AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITD-----KCVLDMRSMDFKSN-S 183
Query: 140 KAVTSDSGNYTC 151
S+ ++ C
Sbjct: 184 AVAWSNKSDFAC 195
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 31.1 bits (70), Expect = 0.095
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 11 ILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV--STEPKISIGYKLN 68
+ + T RFT + +T+ + + DSG Y C++ ++ +S +
Sbjct: 59 VTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFY 118
Query: 69 VVIS 72
+V+S
Sbjct: 119 LVVS 122
Score = 30.3 bits (68), Expect = 0.20
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 12/91 (13%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGA------------NVVNYSQRGGISVVTEKQTRTS 134
G + + C T W + A + ++ +
Sbjct: 25 GQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFF 84
Query: 135 RLVISKAVTSDSGNYTCAPSSSDGASVVVHV 165
+ ++ DSG+Y C SV V
Sbjct: 85 TVTMTDLREEDSGHYWCRIYRPSDNSVSKSV 115
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 32.0 bits (72), Expect = 0.096
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 13/89 (14%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR----GA------NVVNYSQRGGISVVTEK 129
S L + G+ L C + W+R G+ + G + +
Sbjct: 11 SALSLHEGTGSALRC---NFTTTMRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDS 67
Query: 130 QTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
+ R S L I A DSG Y CA +S+
Sbjct: 68 KERYSTLHIRDAQLEDSGTYFCAAEASNT 96
Score = 30.1 bits (67), Expect = 0.43
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57
R S TL I +QL DSGTY C
Sbjct: 60 RLKSAFDSKERYSTLHIRDAQLEDSGTYFCAAEA 93
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system;
2.35A {Mus musculus} PDB: 2e7l_C
Length = 121
Score = 31.0 bits (71), Expect = 0.098
Identities = 4/33 (12%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
+ + + ++L + S+ + Y C
Sbjct: 63 GYKASRPSQEN-FSLTLESATPSQTSVYFCASG 94
Score = 25.6 bits (57), Expect = 7.0
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 102 PPSFIYWYRGANVVNYSQRGGI----SVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157
IY+ GA +++G I Q L + A S + Y CA
Sbjct: 42 ELRLIYYSYGAGS---TEKGDIPDGYKASRPSQEN-FSLTLESATPSQTSVYFCASGGGG 97
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Length = 112
Score = 30.8 bits (70), Expect = 0.12
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 17/93 (18%)
Query: 82 LYIKSGSDINLTCVVLETPDPP-SFIYWYR-----GANVVNYSQRGGISVVTE------- 128
+ G +NL C + ++ WY+ + + G V
Sbjct: 11 RLVPRGQAVNLRC---ILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYL 67
Query: 129 -KQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160
+ + L + A S C S+ +
Sbjct: 68 ATRVTDTELRLQVANMSQGRTLYCTCSADRVGN 100
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable
domain, human constant...; natural killer T cell
receptor, immune system; 1.60A {Mus musculus} PDB:
4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D
3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D
2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 31.5 bits (71), Expect = 0.12
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57
RFT+ + S +L I SQ DS Y C S
Sbjct: 61 RFTAHLNKASLHVSLHIRDSQPSDSALYFCAASE 94
Score = 31.5 bits (71), Expect = 0.14
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR---GAN----VVNYS----QRGGISVVTE 128
L + G +L C + + +WYR G + +S + G +
Sbjct: 10 ESLSVPEGGMASLNCTS--SDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLN 67
Query: 129 KQTRTSRLVISKAVTSDSGNYTCAPSSSDGASVVVHVLNGKKFN 172
K + L I + SDS Y CA S + + + G + +
Sbjct: 68 KASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVS 111
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 30.6 bits (69), Expect = 0.13
Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 12/77 (15%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGA-----------NVVNYSQRGGISVVTEKQTRTSR 135
G +++ C E YW R + G +S+ +
Sbjct: 11 GGSLSVQCP-YEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFT 69
Query: 136 LVISKAVTSDSGNYTCA 152
+ + D+G Y C
Sbjct: 70 VTLENLTEEDAGTYWCG 86
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 31.4 bits (71), Expect = 0.16
Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 24/150 (16%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISI-------GYKLNVVISKAKI 76
+ +D L++ + + T C S + + G KL V+ +
Sbjct: 64 ADYL-ATRVTD-TELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNV 121
Query: 77 IGN-------SELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTE 128
SE I L C+ PD +W G V + + +
Sbjct: 122 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 181
Query: 129 KQ------TRTSRLVISKAVTSDSGN-YTC 151
+SRL +S + N + C
Sbjct: 182 PALNDSRYALSSRLRVSATFWQNPRNHFRC 211
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 31.1 bits (70), Expect = 0.16
Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 2/91 (2%)
Query: 84 IKSGSDINLTCVVLETPDPPSF-IYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKA 141
+ D L C+V+ P S + W R + + + +S + +S
Sbjct: 25 LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQ 84
Query: 142 VTSDSGNYTCAPSSSDGASVVVHVLNGKKFN 172
+TC + + +
Sbjct: 85 DWLSGERFTCTVQHEELPLPLSKSVYRNTGP 115
Score = 27.3 bits (60), Expect = 3.8
Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 17/132 (12%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYI-----KSGSDIN 91
+ +++ + C V E K + + S S +
Sbjct: 78 AVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVT 137
Query: 92 LTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR------------TSRLVIS 139
L+C+V I W R V ++ +V+ E++T S++ +
Sbjct: 138 LSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVE 197
Query: 140 KAVTSDSGNYTC 151
A + + C
Sbjct: 198 TAKWNGGTVFAC 209
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 30.3 bits (68), Expect = 0.18
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 14/91 (15%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR----TSR------- 135
G ++ L V P WY+G V Q G + T++ T + R
Sbjct: 15 GKEVLLL--VHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 72
Query: 136 -LVISKAVTSDSGNYTCAPSSSDGASVVVHV 165
L+I + +D+G YT SD +
Sbjct: 73 SLLIQNIIQNDAGFYTLHVIKSDLVNEEATG 103
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 30.3 bits (68), Expect = 0.19
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 20/92 (21%)
Query: 80 SELYIKSGSDINLTCVV-----LETPDPPSFIYWYRG---------------ANVVNYSQ 119
S + ++ G +++ C +T P YW+R A V
Sbjct: 14 SSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEET 73
Query: 120 RGGISVVTEKQTRTSRLVISKAVTSDSGNYTC 151
R ++ + QT+ L I A SD+G Y
Sbjct: 74 RDRFHLLGDPQTKNCTLSIRDARMSDAGRYFF 105
Score = 29.1 bits (65), Expect = 0.44
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Query: 1 VSWIRKRDLHILTVGILTYTNDL--------RFTSLHSDGSDEWTLKIASSQLRDSGTYE 52
W R + + T RF L + TL I +++ D+G Y
Sbjct: 45 GYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYF 104
Query: 53 CQVSTEP 59
++
Sbjct: 105 FRMEKGN 111
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 31.1 bits (70), Expect = 0.19
Identities = 21/113 (18%), Positives = 32/113 (28%), Gaps = 5/113 (4%)
Query: 49 GTYECQVSTEPKISIGYKLNVVISKAKIIGNS-ELYIKSGSDINLTCVV--LETPDPPSF 105
GT C + +L S + + + +TCVV + DP
Sbjct: 1 GTKSCDKTHTCPPCPAPELLGGPS-VFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVK 59
Query: 106 IYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157
WY G V N + S L + + Y C S+
Sbjct: 60 FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA 112
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 30.7 bits (69), Expect = 0.20
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYR----------GANVVNYSQRGGISVVTEKQTRTSRL 136
++L C T +I+WYR + + S+ + ++S L
Sbjct: 14 EEPVHLPCNH-STISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTL 72
Query: 137 VISKAVTSDSGNYTCAPSSS 156
++ +A D+ Y C +
Sbjct: 73 ILHRATLRDAAVYYCILPLA 92
Score = 29.9 bits (67), Expect = 0.37
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
+ D TL + + LRD+ Y C +
Sbjct: 60 SLA-IAEDRKSS-TLILHRATLRDAAVYYCILPLA 92
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 29.8 bits (67), Expect = 0.21
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNV 69
L I++ + D GTY +V E + + L V
Sbjct: 73 GALHISNVRKEDKGTYYMRVLRETENELKITLEV 106
Score = 26.7 bits (59), Expect = 3.2
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGAN--VVNYSQRGGISVVTEK-------QTRTSR 135
+GS++ L P I W N ++ Y+ ++ + +
Sbjct: 16 YTGSNVTLKIHKDP-LGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGA 74
Query: 136 LVISKAVTSDSGNYTCAPSSSDGASVVVHV 165
L IS D G Y + + +
Sbjct: 75 LHISNVRKEDKGTYYMRVLRETENELKITL 104
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 29.6 bits (67), Expect = 0.25
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKL 67
R++ +GS+ +L I ++ DSGTY+C+ + G
Sbjct: 54 RYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYRRCAFNTGVGY 97
Score = 25.3 bits (56), Expect = 9.0
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYR----GANVVNYSQRGGISVVTEKQTRTSRLVISKAV 142
G + + CV+ +T WYR S G S ++ + ++ L I
Sbjct: 15 GESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLR 74
Query: 143 TSDSGNYTCAPSSSDGASVVVHVLNG 168
DSG Y C + V G
Sbjct: 75 VEDSGTYKCKAYRRCAFNTGVGYKEG 100
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 30.2 bits (67), Expect = 0.25
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 26/100 (26%)
Query: 79 NSELYIKSGSDINLTCVV-LETPDPPSFIYWYRGANVV----------NYSQRGGISVVT 127
++E+ + +G + L C L P I W +GA+ N+ G V +
Sbjct: 11 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 70
Query: 128 EKQTRTSR---------------LVISKAVTSDSGNYTCA 152
+ + L ++ D G Y C
Sbjct: 71 DSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQ 110
Score = 29.4 bits (65), Expect = 0.40
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 28 LHSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
TL++ +D G Y CQV+
Sbjct: 84 ASVANLAAPTLRLTHVHPQDGGRYWCQVAQW 114
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 30.9 bits (68), Expect = 0.25
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 17/80 (21%)
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
G + LTC E I W + +E L I
Sbjct: 19 APGEMVVLTCDTPEEDG----ITWTLDQS-------------SEVLGSGKTLTIQVKEFG 61
Query: 145 DSGNYTCAPSSSDGASVVVH 164
D+G YTC + ++
Sbjct: 62 DAGQYTCHKGGEVLSHSLLL 81
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 31.1 bits (69), Expect = 0.26
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 10/69 (14%)
Query: 83 YIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAV 142
+ S L+C + + W NV + G Q+ L I
Sbjct: 511 SLAPNSRYYLSCPM---ESRHATYSWRHKENVEQSCEPG-------HQSPNCILFIENLT 560
Query: 143 TSDSGNYTC 151
G+Y C
Sbjct: 561 AQQYGHYFC 569
Score = 27.3 bits (59), Expect = 4.2
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 37 TLKIASSQLRDSGTYECQVSTE 58
L I + + G Y C+ + E
Sbjct: 553 ILFIENLTAQQYGHYFCE-AQE 573
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 30.6 bits (68), Expect = 0.34
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 14/91 (15%)
Query: 84 IKSGSDINLTCVVLETP-----DPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVI 138
++ S+ CV+ E ++I W + Q I+ RT+ V
Sbjct: 16 VQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN-------RTASSVT 68
Query: 139 SKAVTSDSGNYTC--APSSSDGASVVVHVLN 167
+ S + TC +V +
Sbjct: 69 FTDIASLNIQLTCNILTFGQLEQNVYGITII 99
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 30.2 bits (68), Expect = 0.35
Identities = 27/150 (18%), Positives = 43/150 (28%), Gaps = 23/150 (15%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISI-------GYKLNVVISKAKI 76
++ ++ L L DSG Y C S + G L VV K+
Sbjct: 63 NLSAS-RPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKV 121
Query: 77 IGN-------SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEK 129
SE I L C+ + W+ V+ + E+
Sbjct: 122 FPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 181
Query: 130 QTR-------TSRLVISKAVTSDSGN-YTC 151
+SRL +S + N + C
Sbjct: 182 PALNDSRYALSSRLRVSATFWQNPRNHFRC 211
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 29.2 bits (65), Expect = 0.39
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 10/88 (11%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYS------QRGGISVVTEKQTRTSRLV 137
+ G D + + W+ + + + G + E++ RL+
Sbjct: 20 VYDGEDAVFSLDLSTIIQGT----WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLI 75
Query: 138 ISKAVTSDSGNYTCAPSSSDGASVVVHV 165
+ DSG S + +
Sbjct: 76 LHAVKHQDSGALVGFSCPGVQDSAALTI 103
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 29.5 bits (66), Expect = 0.39
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 13/78 (16%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGA------------NVVNYSQRGGISVVTEKQTRTS 134
+ + CV + +W RGA +R +S+ ++ RT
Sbjct: 17 RGSLTVQCV-YRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTF 75
Query: 135 RLVISKAVTSDSGNYTCA 152
+ + + +D+ Y C
Sbjct: 76 TVTMEDLMKTDADTYWCG 93
Score = 28.0 bits (62), Expect = 1.2
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
T+ + D+ TY C + +G + V I A
Sbjct: 76 TVTMEDLMKTDADTYWCGIEK-TGNDLGVTVQVTIDPA 112
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 29.1 bits (65), Expect = 0.42
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKA 74
R + + + + IA DSG Y+C + + + +++ + +
Sbjct: 63 RANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGI-NSRGLSFDVSLEVLEH 112
Score = 29.1 bits (65), Expect = 0.49
Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 16/112 (14%)
Query: 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSF-IYWYRGA------------NVVNYSQ 119
K+ I G E+ G+ +++TC T YW R V+
Sbjct: 1 KSPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKY 60
Query: 120 RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA---PSSSDGASVVVHVLNG 168
G ++ + T + I++ DSG Y C S V + VL
Sbjct: 61 AGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEH 112
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 28.8 bits (65), Expect = 0.44
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
R+ GS ++L+I+ ++ DSGTY+CQ P L +
Sbjct: 54 RYDETVDKGSKSFSLRISDLRVEDSGTYKCQADYSPSCYSYPSLESAV 101
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 30.0 bits (68), Expect = 0.47
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 10/124 (8%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGY--KLNVVISKAK----IIGNSELYIKSGSDI 90
TL+I+ + D G Y C ++ ++ G KL + + A I S + SG
Sbjct: 110 TLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGG-A 168
Query: 91 NLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTR---TSRLVISKAVTSDSG 147
++ C + + W + + K + +S L ++K
Sbjct: 169 SVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN 228
Query: 148 NYTC 151
+YTC
Sbjct: 229 SYTC 232
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C*
3bx7_C
Length = 130
Score = 29.0 bits (64), Expect = 0.55
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 1 VSWIRKRDLHILTVGILTYTN-------DLRFTSLHSDGSDEWTLKIASSQLRDSGTYEC 53
V+ +R+ D + V TY D + S G+ L I + D+G Y C
Sbjct: 36 VTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQV-NLTIQGLRAMDTGLYIC 94
Query: 54 QVS 56
+V
Sbjct: 95 KVE 97
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 28.5 bits (63), Expect = 0.57
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVV-TEKQTRTSRLVISKAVTSD 145
G INL + D + W RG+ +V +R + L I D
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRDD 70
Query: 146 SGNYTCAPSSSDGASV 161
SG Y S++G +
Sbjct: 71 SGTYNVTVYSTNGTRI 86
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 28.6 bits (63), Expect = 0.65
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 73 KAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYR--GANVVNYSQRGGISVVTEKQ 130
+ I SE I +G L C V + P + W + G V R S EK
Sbjct: 12 QLYIKRQSEHSILAGDPFELECPVKYCANRPH-VTWCKLNGTTCVKLEDRQ-TSWKEEKN 69
Query: 131 TRTSRLVISKAVTSDSGNYTCAPSSSDGA----SVVVHV 165
L + +D+G+Y C+ + S ++V
Sbjct: 70 ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 108
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 28.1 bits (62), Expect = 0.70
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 16/72 (22%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
SG+ + LTC + D + W + + + + + D
Sbjct: 13 SGTSVELTCPL----DSDENLKWEKNGQELPQKHDKHLVLQDFSEV------------ED 56
Query: 146 SGNYTCAPSSSD 157
SG Y C +S+
Sbjct: 57 SGYYVCYTPASN 68
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 28.6 bits (64), Expect = 0.76
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISKA 74
R +++ + Q+ DSG Y+C + PK + ++ +V++
Sbjct: 69 RIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTLE 121
Score = 26.7 bits (59), Expect = 3.4
Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 15/88 (17%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGA---------------NVVNYSQRGGIS 124
+ +K G +++ C S W + Q G I
Sbjct: 12 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRII 71
Query: 125 VVTEKQTRTSRLVISKAVTSDSGNYTCA 152
+ R+ + DSG Y C
Sbjct: 72 LEDYHDHGLLRVRMVNLQVEDSGLYQCV 99
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 28.3 bits (63), Expect = 0.77
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISK 73
R T L G +++ + Q D+G Y C V I +++++ I
Sbjct: 56 RRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNILP 105
Score = 27.9 bits (62), Expect = 0.97
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 11/89 (12%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRG----------ANVVNYSQRGGISVVTEKQTRTSRL 136
GS I + C D + W R + V + G + +T+ ++
Sbjct: 12 GSSILVQCH-YRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQV 70
Query: 137 VISKAVTSDSGNYTCAPSSSDGASVVVHV 165
+ D+G Y C + G ++ V
Sbjct: 71 EMVTLQEEDAGEYGCMVDGARGPQILHRV 99
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 28.3 bits (63), Expect = 0.82
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
+ S D ++++ L + + G Y C V + + + V+
Sbjct: 73 KLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQ 120
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus}
PDB: 3kho_A*
Length = 133
Score = 28.5 bits (64), Expect = 0.85
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQ 54
L R + GS +TL I + Q D+G Y C+
Sbjct: 61 LVSEEG-RIVQTQN-GSV-YTLTIQNIQYEDNGIYFCK 95
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 28.7 bits (64), Expect = 1.0
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 12/89 (13%)
Query: 84 IKSGSDINLTCVVLETPDPPSF-IYWYRGANVVNYSQRGGISVVTEKQ-----TRTSRLV 137
+ GS+ NLTC + D W S + + E+ + +S L
Sbjct: 16 LLLGSEANLTCTLTGLRDASGVTFTWTPS------SGKSAVQGPPERDLCGCYSVSSVLP 69
Query: 138 ISKAVTSDSGNYTCAPSSSDGASVVVHVL 166
+ +TC + + + + L
Sbjct: 70 GCAEPWNHGKTFTCTAAYPESKTPLTATL 98
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 27.9 bits (62), Expect = 1.1
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK--ISIGYKLNVVISKA 74
R +++ + Q+ DSG Y+C + PK + ++ +V++K
Sbjct: 64 RIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTKG 116
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 28.3 bits (63), Expect = 1.5
Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 21/148 (14%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGY-----KLNVVISKAKIIG 78
+F H+ + TL + S+ DS Y C T + +L V+ +
Sbjct: 66 KFLINHASLTL-STLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFP 124
Query: 79 N-------SELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQ 130
SE I L C+ PD +W G V + + +
Sbjct: 125 PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPA 184
Query: 131 ------TRTSRLVISKAVTSDSGN-YTC 151
+SRL +S + N + C
Sbjct: 185 LNDSRYALSSRLRVSATFWQNPRNHFRC 212
>1cid_A T cell surface glycoprotein CD4; 2.80A {Rattus norvegicus} SCOP:
b.1.1.1 b.1.1.3
Length = 177
Score = 28.2 bits (62), Expect = 1.5
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 37 TLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCVV 96
TL+I L+ +G+ + T + + ++N+V+ K + LTC V
Sbjct: 73 TLQIPQVSLQFAGSGNLTL-TLDRGILYQEVNLVVMK----------VTQPDSNTLTCEV 121
Query: 97 LETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRT 133
+ P + + S++ + V +
Sbjct: 122 MGPTSPKMRLILKQENQEARVSRQEKVIQVQAPEAGV 158
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.8
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 39/161 (24%)
Query: 23 LRFTSLHSDGSDEWTLKI------ASSQLRDS-------GTYECQVSTEPKIS------- 62
R +L S GS E L + +SQL++ T EP
Sbjct: 6 TRPLTL-SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 63 IGYKLNVVISKAKIIGNSEL-----------YIKSGSDINLTCVVLETPDPPSFIYWYRG 111
+GY ++ ++ +K+ ++ Y++ G+DI+ + +
Sbjct: 65 LGY-VSSLVEPSKVGQFDQVLNLCLTEFENCYLE-GNDIH--ALAAKLLQENDTTLVKTK 120
Query: 112 ANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGN-YTC 151
+ NY ++ + S L +AV +
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALF--RAVGEGNAQLVAI 159
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 28.4 bits (63), Expect = 1.9
Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 20/149 (13%)
Query: 17 LTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKI 76
+ + +S S L + T+ C + + L +SK+
Sbjct: 293 VQGPPERDLCGCYSVSS---VLPGCAEPWNHGKTFTCTAAYPESKT---PLTATLSKSGN 346
Query: 77 IGNSELYIK--------SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTE 128
E+++ + LTC+ + W +G+ + + + E
Sbjct: 347 TFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQE 406
Query: 129 -KQTRTSRLVISKA-VTSD---SGN-YTC 151
Q T+ V S V ++ G+ ++C
Sbjct: 407 PSQGTTTFAVTSILRVAAEDWKKGDTFSC 435
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 28.2 bits (61), Expect = 2.3
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 9/64 (14%)
Query: 88 SDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSG 147
L C + ++W V+ + + L+I DSG
Sbjct: 549 GTAELKCSQ---KSNLARVFWKFQNGVLKAESPKYGLMGRKN------LLIFNLSEGDSG 599
Query: 148 NYTC 151
Y C
Sbjct: 600 VYQC 603
Score = 26.7 bits (57), Expect = 7.5
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 35 EWTLKIASSQLRDSGTYECQVSTE 58
L I + DSG Y+C +S E
Sbjct: 585 RKNLLIFNLSEGDSGVYQC-LSEE 607
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 27.0 bits (59), Expect = 2.4
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 1 VSWIRKRDLHILTVGILTYTND------LRFTSLHSDGSDEWTLKIASSQLRDSGTYECQ 54
V W + + IL + ND + F+ ++ ++ L I S++L+DSG Y +
Sbjct: 34 VQWKKTEQGSHRKIEILNWYNDGPSWSNVSFSDIYGFDYGDFALSIKSAKLQDSGHYLLE 93
Query: 55 VSTE 58
++
Sbjct: 94 ITNT 97
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 27.9 bits (62), Expect = 2.5
Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 27/164 (16%)
Query: 12 LTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST-----------EPK 60
LT G+ T+ L+ + L+S S + S + TY C V+ EPK
Sbjct: 173 LTSGVHTFPAVLQSSGLYSLSS----VVTVPSSSLGTQTYICNVNHKPSNTKVDKKAEPK 228
Query: 61 ISIGYKLNVVISKAKIIGNSELYI---------KSGSDINLTCVVLE-TPDPPSF-IYWY 109
+++G +++ +TCVV++ + + P WY
Sbjct: 229 SCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWY 288
Query: 110 R-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152
G V N + S L + + Y C
Sbjct: 289 VDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCK 332
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 27.7 bits (61), Expect = 2.5
Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 20/147 (13%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-----------PKISIGYKLNVVIS 72
++ + L + S+Q + Y C S+ NV
Sbjct: 65 GYSVSREKKES-FPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPP 123
Query: 73 KAKIIGNSELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQ- 130
+ + SE I L C+ PD +W G V + + +
Sbjct: 124 EVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPAL 183
Query: 131 -----TRTSRLVISKAVTSDSGN-YTC 151
+ +SRL +S + N + C
Sbjct: 184 NDSRYSLSSRLRVSATFWQNPRNHFRC 210
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 27.8 bits (62), Expect = 2.8
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59
RF+ S ++TL I+S Q D TY C
Sbjct: 199 RFSG--SGSGTDYTLTISSLQPEDVATYFCYQYNNG 232
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 27.2 bits (60), Expect = 3.5
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 3/81 (3%)
Query: 80 SELYIKSGSDINLTCVV--LETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRL 136
+ + +TCVV + DP WY G V N + S L
Sbjct: 11 PKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVL 70
Query: 137 VISKAVTSDSGNYTCAPSSSD 157
+ + Y C S+
Sbjct: 71 TVLHQDWLNGKEYKCKVSNKA 91
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 27.2 bits (60), Expect = 3.7
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 87 GSDINLTCVV--LETPDPPSFIYWYRGANVVNYSQRGGISVVT-EKQTRTSRLVISKAVT 143
G +TCVV + DP W+ V+ +Q + S L I +
Sbjct: 32 GLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDW 91
Query: 144 SDSGNYTCAPSSSD 157
+ + C +S
Sbjct: 92 LNGKTFKCKVNSGA 105
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein,
cytochrome C oxidase, high- resolution structure,
immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB:
1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A
1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A
1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...
Length = 120
Score = 26.4 bits (59), Expect = 4.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 35 EWTLKIASSQLRDSGTYECQ 54
+++LKI S D G+Y CQ
Sbjct: 70 QFSLKINSLLPEDFGSYYCQ 89
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 26.2 bits (58), Expect = 4.4
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 12/79 (15%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ G + L C P +++ + + ++ +K+ + +
Sbjct: 16 VSLGDTVTLRC---HLPRMAAWVQLWLNGTLRFDKEK-------DKEQDAAEFSFAVTNL 65
Query: 144 SDSGNYTC--APSSSDGAS 160
D+G Y C S S
Sbjct: 66 EDAGTYQCRYQVSEPLWTS 84
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus
musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A
1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L
1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Length = 113
Score = 25.9 bits (58), Expect = 5.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 37 TLKIASSQLRDSGTYECQVSTE 58
TLKI+ + D G Y C ST
Sbjct: 77 TLKISRVEAEDLGVYFCSQSTH 98
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain
amyloidosis, amyloid, immunoglobulin, protein fibril;
1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A
3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A
3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L*
1bvk_A ...
Length = 109
Score = 25.9 bits (58), Expect = 5.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 35 EWTLKIASSQLRDSGTYECQ 54
++T I+S Q D TY CQ
Sbjct: 72 DFTFTISSLQPEDIATYYCQ 91
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold,
immune system; HET: AB0; 1.70A {Mus musculus} PDB:
3iy1_A
Length = 119
Score = 25.9 bits (58), Expect = 5.7
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 35 EWTLKIASSQLRDSGTYECQ 54
+++ I++ + D+ TY C
Sbjct: 72 DYSFSISNLEPEDAATYYCL 91
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4;
immunoglobulin variable domain-like beta-sandwich,
homodimer, immune system; 2.00A {Mus musculus} SCOP:
b.1.1.1
Length = 117
Score = 25.7 bits (56), Expect = 5.8
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLH------SDGSDEWTLKIASSQLRDSGTYECQ 54
V+ +R+ + + V T+T L + L I + D+G Y C+
Sbjct: 34 VTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLCK 93
Query: 55 VS 56
V
Sbjct: 94 VE 95
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 26.1 bits (57), Expect = 5.9
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 102 PPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGASV 161
+ + + + + + + ++ T + + K D G YT
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHI--DRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGH 123
Query: 162 VVHVLNGKKFNKLS 175
VL G + KL
Sbjct: 124 STLVLIGDVYKKLQ 137
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen);
2.40A {Mus musculus} SCOP: b.1.1.1
Length = 108
Score = 25.5 bits (57), Expect = 6.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 35 EWTLKIASSQLRDSGTYECQ 54
++TL I+S + D Y CQ
Sbjct: 70 DFTLTISSLEPEDFAMYICQ 89
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 26.4 bits (58), Expect = 7.1
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 91 NLTCVV--LETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSG 147
+TCVV + DP W+ V + S L I +
Sbjct: 22 KVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGK 81
Query: 148 NYTCAPSSSD 157
+ C +S+
Sbjct: 82 EFKCRVNSAA 91
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain;
antibody-peptide complex, immunoglobulin fold, type II'
beta turn., immune system; 1.80A {Mus musculus} SCOP:
b.1.1.1 PDB: 1i8i_A
Length = 107
Score = 25.5 bits (57), Expect = 7.2
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 35 EWTLKIASSQLRDSGTYECQ 54
++ I ++ D G Y C
Sbjct: 70 DFVFTIENTLSEDVGDYYCL 89
>3bdb_A Novel immune-type receptor 11; immunoglobulin variable
domain-like beta-sandwich, stalk region, immune system;
2.80A {Ictalurus punctatus}
Length = 137
Score = 25.7 bits (57), Expect = 7.3
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 22 DLRFTSLHSDGSD-EWTLKIASSQLRDSGTYECQ 54
D RF+ +D ++ L I ++ D G Y C
Sbjct: 64 DSRFSM---TVNDQKFDLNIIGAREDDGGEYFCG 94
>3i84_A Cervical EMMPRIN; CD147, dimerization, cell adhesion, beta-strand
swapping; 2.00A {Homo sapiens} PDB: 3i85_A
Length = 98
Score = 25.2 bits (54), Expect = 7.7
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 17/85 (20%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
GS I LTC + ++ + W +G V+ K+ V SD
Sbjct: 21 LGSKILLTCSLDDSATEVTGHRWLKGGVVL-------------KEDALPGQKTEFKVDSD 67
Query: 146 --SGNYTCA--PSSSDGASVVVHVL 166
G Y+C P A++ +H
Sbjct: 68 DQWGEYSCVFLPEPMGTANIQLHGG 92
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 26.0 bits (57), Expect = 7.8
Identities = 13/64 (20%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 91 NLTCVV--LETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSG 147
+TCVV + DP I W+ V + S L I
Sbjct: 30 KVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGK 89
Query: 148 NYTC 151
+ C
Sbjct: 90 EFKC 93
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 25.3 bits (55), Expect = 8.1
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 37 TLKIASSQLRDSGTYECQV---STEPKISIGYKLNV 69
L I+ ++ D+G Y+ + + + Y L +
Sbjct: 73 NLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable
domain-like beta-sandwich, immune system; 1.56A
{Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Length = 111
Score = 25.3 bits (56), Expect = 8.1
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 32 GSD-EWTLKIASSQLRDSGTYECQ 54
+D ++ L I ++ D G Y C
Sbjct: 71 VNDQKFDLNIIGTREDDGGEYFCG 94
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 25.4 bits (56), Expect = 9.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 37 TLKIASSQLRDSGTYECQ 54
++ I++ D+GTY C
Sbjct: 75 SISISNITPADAGTYYCV 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.385
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,041,956
Number of extensions: 164670
Number of successful extensions: 1524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1025
Number of HSP's successfully gapped: 659
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)