RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3475
(207 letters)
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR
{Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 48.6 bits (115), Expect = 1e-08
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ + + + C +P + W + R G + + + L++ V
Sbjct: 17 VPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGG---YKVRNQHWSLIMESVVP 71
Query: 144 SDSGNYTCAPSSSDG---ASVVVHVL 166
SD GNYTC + G + + V+
Sbjct: 72 SDKGNYTCVVENEYGSINHTYHLDVV 97
Score = 27.5 bits (60), Expect = 0.46
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 29 HSDGSDEWTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNVV 70
+ + W+L + S D G Y C V E I+ Y L+VV
Sbjct: 55 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 48.3 bits (114), Expect = 2e-08
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ +++G + L V T P W + + S+ + L I
Sbjct: 8 EDQKVRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHMKVENSENGSK----LTIL 61
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
A G YT + G A V + V+
Sbjct: 62 AARQEHCGCYTLLVENKLGSRQAQVNLTVV 91
Score = 32.5 bits (73), Expect = 0.009
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 26/70 (37%)
Query: 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVISKAKIIGNSELYIKSGSDINLTCV 95
L I +++ G Y V + +G+ + + +NLT
Sbjct: 56 SKLTILAARQEHCGCYTLLVENK------------------LGSRQ------AQVNLT-- 89
Query: 96 VLETPDPPSF 105
V++ PDPP+
Sbjct: 90 VVDKPDPPAG 99
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 45.1 bits (106), Expect = 2e-07
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 14/89 (15%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ +K G D+ + C V T P + W A ++ + S LVI
Sbjct: 11 KVIVVKQGQDVTIPCKV--TGLPAPNVVWSHNAKPLSGGRA---------TVTDSGLVIK 59
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHV 165
D G Y C ++ G +V V
Sbjct: 60 GVKNGDKGYYGCRATNEHGDKYFETLVQV 88
Score = 27.4 bits (60), Expect = 0.41
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 35 EWTLKIASSQLRDSGTYECQVS 56
+ L I + D G Y C+ +
Sbjct: 53 DSGLVIKGVKNGDKGYYGCRAT 74
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 43.3 bits (101), Expect = 1e-06
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 22 DLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKIS------IGYKLNVV 70
++ S SD WTL++ + Q++D G Y+C + + + +L+V+
Sbjct: 55 HSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109
Score = 30.2 bits (67), Expect = 0.065
Identities = 10/92 (10%), Positives = 19/92 (20%), Gaps = 14/92 (15%)
Query: 87 GSDINLTCVVLETPD-------------PPSFIYWYRGANVVNYSQRGGISVVTEKQTRT 133
+L C + + + S T + +
Sbjct: 9 NETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDS 68
Query: 134 SRLVISKAVTSDSGNYTCAPSS-SDGASVVVH 164
L + D G Y C + +H
Sbjct: 69 WTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIH 100
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 41.8 bits (97), Expect = 4e-06
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDS 146
G + L C P P+ + G + N + + ++ +S L I +D
Sbjct: 20 GQSVTLVCDADGFP-EPTMSWTKDGEPIENEEEDDEKHIFSD---DSSELTIRNVDKNDE 75
Query: 147 GNYTCAPSSSDG---ASVVVHVL 166
Y C + G AS+ + V
Sbjct: 76 AEYVCIAENKAGEQDASIHLKVF 98
Score = 24.5 bits (52), Expect = 6.6
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 36 WTLKIASSQLRDSGTYECQVS 56
L I + D Y C
Sbjct: 63 SELTIRNVDKNDEAEYVCIAE 83
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 40.7 bits (94), Expect = 9e-06
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 77 IGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRL 136
+ L G + LTC +E D + ++W RL
Sbjct: 11 VARGVLTSLPGDSVTLTCPGVEPEDNAT-VHWVLRKPAAGSHPS-------RWAGMGRRL 62
Query: 137 VISKAVTSDSGNYTCAPSSSDGASVVVHV 165
++ DSGNY+C + +V + V
Sbjct: 63 LLRSVQLHDSGNYSCYRAGRPAGTVHLLV 91
Score = 28.7 bits (63), Expect = 0.17
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 34 DEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNV 69
L + S QL DSG Y C + P ++ ++V
Sbjct: 58 MGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDV 93
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 40.6 bits (94), Expect = 9e-06
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
G + L C V + + + W++ + + + E + L+I A
Sbjct: 12 AYCGERVELECEV---SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI--LIIEGATK 66
Query: 144 SDSGNYTC-APSSSDGASVVV 163
+D+ Y+ A + V
Sbjct: 67 ADAAEYSVMTTGGQSSAKLSV 87
Score = 27.5 bits (60), Expect = 0.39
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 36 WTLKIASSQLRDSGTYECQVSTE 58
L I + D+ Y +
Sbjct: 57 HILIIEGATKADAAEYSVMTTGG 79
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 40.7 bits (94), Expect = 9e-06
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+L + G + L C V I W + VV + + + +Q L +
Sbjct: 4 VKLTVSQGQPVKLNCSV--EGMEEPDIQWVKDGAVVQNLDQ--LYIPVSEQHWIGFLSLK 59
Query: 140 KAVTSDSGNYTCAPSSSDGASV 161
SD+G Y C +
Sbjct: 60 SVERSDAGRYWCQVEDGGETEI 81
Score = 26.8 bits (58), Expect = 0.83
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 29 HSDGSDEWTLKIASSQLRDSGTYECQVSTE--PKISIGYKLNV 69
S+ L + S + D+G Y CQV +IS L V
Sbjct: 47 VSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 89
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 40.4 bits (93), Expect = 2e-05
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT---RTSRLVISK 140
+ G+ LTC + P + ++ G +++ + + + T ++ L+
Sbjct: 14 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 73
Query: 141 AVTSDSGNYTCAPSSSDG---ASVVVHV 165
DSG Y C + G S H+
Sbjct: 74 VTAFDSGEYYCQAQNGYGTAMRSEAAHM 101
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 39.5 bits (91), Expect = 3e-05
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ G N C V P + W++ + S + + L I++
Sbjct: 13 VGEGQSANFYCRV--IASSPPVVTWHKDDRELKQSVK----YMKRYNGNDYGLTINRVKG 66
Query: 144 SDSGNYTCAPSSSDG---ASVVVHV 165
D G YT +S G V ++V
Sbjct: 67 DDKGEYTVRAKNSYGTKEEIVFLNV 91
Score = 25.2 bits (54), Expect = 2.6
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 36 WTLKIASSQLRDSGTYECQVS 56
+ L I + D G Y +
Sbjct: 57 YGLTINRVKGDDKGEYTVRAK 77
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 39.2 bits (90), Expect = 4e-05
Identities = 21/93 (22%), Positives = 27/93 (29%), Gaps = 10/93 (10%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRG-------GISVVTEKQTRTSRL 136
G D+ C V P + N Y G + V L
Sbjct: 17 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 76
Query: 137 VISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
I D+G YTC +S G S + VL
Sbjct: 77 YIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109
Score = 28.8 bits (63), Expect = 0.23
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTE-P 59
+++ L Y L+ +++ + L I + D+G Y C
Sbjct: 39 WIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG 98
Query: 60 KISIGYKLNVV 70
L V+
Sbjct: 99 ISFHSAWLTVL 109
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 38.7 bits (89), Expect = 6e-05
Identities = 11/62 (17%), Positives = 25/62 (40%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPK 60
+ W +++ + + + D ++ ++ I + + D GTYEC V K
Sbjct: 30 IYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEK 89
Query: 61 IS 62
+
Sbjct: 90 DA 91
Score = 28.0 bits (61), Expect = 0.34
Identities = 9/75 (12%), Positives = 17/75 (22%), Gaps = 3/75 (4%)
Query: 94 CVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAP 153
+ + + G + + +VI SD G Y C
Sbjct: 28 TRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN---NLSIVILALRPSDEGTYECVV 84
Query: 154 SSSDGASVVVHVLNG 168
+ + L
Sbjct: 85 LKYEKDAFKREHLAE 99
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 37.7 bits (86), Expect = 2e-04
Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 28/114 (24%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGIS--------------- 124
+ + +G+ + L + P P+ I+ R
Sbjct: 17 DTIVVVAGNKLRLDVPISGDP-APTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDK 75
Query: 125 ---------VVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
V E S + A D G YT + G ++ V V+
Sbjct: 76 KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129
Score = 26.2 bits (56), Expect = 1.9
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 33 SDEWTLKIASSQLRDSGTYECQVSTEP-KISIGYKLNVV 70
D + ++ D G Y V + + + V+
Sbjct: 91 KDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules
[TaxId: 9606]}
Length = 91
Score = 36.8 bits (84), Expect = 2e-04
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 82 LYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKA 141
+ + G +C +P + W R V++ S R ++ K T IS
Sbjct: 9 MTVYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF----EISSV 62
Query: 142 VTSDSGNYTCAPSSSDG---ASVVVHV 165
SD GNY+ +S+G A + +
Sbjct: 63 QASDEGNYSVVVENSEGKQEAEFTLTI 89
Score = 24.4 bits (52), Expect = 4.9
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 36 WTLKIASSQLRDSGTYECQVS 56
T +I+S Q D G Y V
Sbjct: 55 STFEISSVQASDEGNYSVVVE 75
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 37.2 bits (85), Expect = 2e-04
Identities = 14/94 (14%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 80 SELYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRT---SR 135
+ + + + +++ C+ P + W +V+N + + T
Sbjct: 5 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64
Query: 136 LVISKAVTSDSGNYTCAPSSSDG---ASVVVHVL 166
L +++ ++GNYT ++ G AS++ +
Sbjct: 65 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 36.9 bits (84), Expect = 2e-04
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 84 IKSGSDINLTCVVLETPDPPS-FIYWYRGANVVNYSQRGGISVVTEKQTR-----TSRLV 137
+ G I + V + W++G V S+ G + + R L
Sbjct: 16 VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELH 75
Query: 138 ISKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
I+ A + +G Y C S+ D ++ + V
Sbjct: 76 ITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106
Score = 24.6 bits (52), Expect = 6.2
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 36 WTLKIASSQLRDSGTYECQVSTE-PKISIGYKLNV 69
+ L I +Q +G Y C+VST+ + L V
Sbjct: 72 FELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 36.7 bits (84), Expect = 3e-04
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 17/90 (18%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
++ Y +G + L C P P G+ + + L I
Sbjct: 13 ADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPL------------LHIQ 60
Query: 140 KAVTSDSGNYTCAPSSSDG-----ASVVVH 164
D G Y C + G +++H
Sbjct: 61 NVDFEDEGTYECEAENIKGRDTYQGRIIIH 90
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 36.1 bits (82), Expect = 4e-04
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 12/91 (13%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ K G D + C V+ + P ++ R + L I
Sbjct: 9 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVR-------FIVLSNNYLQIR 61
Query: 140 KAVTSDSGNYTC-----APSSSDGASVVVHV 165
+D G Y C A + + V V
Sbjct: 62 GIKKTDEGTYRCEGRILARGEINFKDIQVIV 92
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 35.6 bits (81), Expect = 6e-04
Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 13/89 (14%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
++ GSD+ +CV P P + L S
Sbjct: 9 TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRI----------EVSGGELRFS 58
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHV 165
K V DSG Y C + G AS + V
Sbjct: 59 KLVLEDSGMYQCVAENKHGTVYASAELTV 87
>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 35.7 bits (81), Expect = 7e-04
Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 82 LYIKSGSDINLTCVVLE-TPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISK 140
+ ++ C+ +PP ++W + S+ + E + L+ +K
Sbjct: 9 VSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNK 68
Query: 141 AVTSDSGNYTCAPSSSDG---ASVVVHVL 166
++GNYT + G ++ H L
Sbjct: 69 PTHYNNGNYTLIAKNPLGTANQTINGHFL 97
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules
[TaxId: 9606]}
Length = 98
Score = 35.6 bits (81), Expect = 7e-04
Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 8/89 (8%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+ GSD + V P WY+ + S R + LVI
Sbjct: 12 QSQTVGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDR---IYWYWPEDNVCELVIR 66
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHV 165
DS + + G + + V
Sbjct: 67 DVTGEDSASIMVKAINIAGETSSHAFLLV 95
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 98
Score = 35.1 bits (80), Expect = 9e-04
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSR---LVISKAVT 143
G INL + D + W RG+ +V +R + L I
Sbjct: 10 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 69
Query: 144 SDSGNYTCAPSSSDGASVVVHVLN 167
DSG Y S++G ++ L+
Sbjct: 70 DDSGTYNVTVYSTNGTRILNKALD 93
Score = 25.0 bits (54), Expect = 3.6
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57
+ ++G LKI + DSGTY V +
Sbjct: 52 GAFEILANGD----LKIKNLTRDDSGTYNVTVYS 81
>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 119
Score = 35.7 bits (81), Expect = 9e-04
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 25 FTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKI---SIGYKLNVV 70
+ + ++ I + D+GT+ C V P I + L V
Sbjct: 70 IQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118
Score = 27.9 bits (61), Expect = 0.43
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 105 FIYWYRGANVVNYSQ--RGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG---- 158
++ +G ++ + I V + + +VI SD+G +TC +
Sbjct: 50 IFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGK 109
Query: 159 -ASVVVHVL 166
+ V ++V
Sbjct: 110 TSQVTLYVF 118
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 35.3 bits (80), Expect = 9e-04
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 81 ELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQ------TRTS 134
++Y ++ + P + W + + V + + + T +
Sbjct: 4 QIYGVVYGNVTFHV---PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 135 RLVISKAVTSDSGNYTC-APSSSDGASVVVHVL 166
L I +SD Y +P+ +D ++VL
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDTMKFFLYVL 93
Score = 28.3 bits (62), Expect = 0.22
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 36 WTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVV 70
+L I + D YE + ++ + L V+
Sbjct: 60 GSLTIYNLTSSDEDEYEMESPNI-TDTMKFFLYVL 93
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 35.2 bits (80), Expect = 0.001
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ G I LT + D + + W + + S + E L IS+
Sbjct: 18 VSKGHKIRLTVEL---ADHDAEVKWLKNGQEIQMSGS---KYIFESIGAKRTLTISQCSL 71
Query: 144 SDSGNYTC-APSSSDGASVVV 163
+D Y C + V
Sbjct: 72 ADDAAYQCVVGGEKCSTELFV 92
Score = 26.0 bits (56), Expect = 1.4
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 36 WTLKIASSQLRDSGTYECQVSTE 58
TL I+ L D Y+C V E
Sbjct: 62 RTLTISQCSLADDAAYQCVVGGE 84
>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 35.1 bits (80), Expect = 0.001
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 18 TYTNDLRFTSLHSD-GSDEWTLKIASSQLRDSGTYECQVS 56
+ R S S + L I + ++ DS TY C+V
Sbjct: 48 PSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVE 87
Score = 28.2 bits (62), Expect = 0.27
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 15/85 (17%)
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGG--ISVVTEKQTRTSR------- 135
K G + LTC + +W + +G ++ R
Sbjct: 7 KKGDTVELTCTA--SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 136 ----LVISKAVTSDSGNYTCAPSSS 156
L+I DS Y C
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQ 89
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId:
9103]}
Length = 102
Score = 34.9 bits (79), Expect = 0.001
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
++ + GS C V P + W++ N V S+ I E IS
Sbjct: 16 LDMEVVEGSAARFDCKV--EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL---TIS 70
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHV 165
+ D YTC +S G + + V
Sbjct: 71 EVCGDDDAKYTCKAVNSLGEATCTAELLV 99
Score = 24.1 bits (51), Expect = 8.3
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 29 HSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
D +L I+ D Y C+
Sbjct: 58 DYDEEGNCSLTISEVCGDDDAKYTCKAVNS 87
>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2
(ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 35.0 bits (79), Expect = 0.001
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 76 IIGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTS 134
I+ + G + C V P ++ +RG ++Y G + ++ T T
Sbjct: 6 ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATAT- 64
Query: 135 RLVISKAVTSDSGNYTCA---PSSSDGASVVVHV 165
+ N++C S G ++
Sbjct: 65 -FNSTADREDGHRNFSCLAVLDLMSRGGNIFHKH 97
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 34.6 bits (78), Expect = 0.002
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 9/91 (9%)
Query: 84 IKSGSDINLTCVVLETPDP--PSFIYWYRGANVVNYS----QRGGISVVTEKQTRTSRLV 137
+K G DI V P+ ++ + + + + T +
Sbjct: 12 VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQ 71
Query: 138 ISKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
I KA + +GNY C + D S + V
Sbjct: 72 IIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 102
Score = 24.6 bits (52), Expect = 6.7
Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP- 59
+ W + + + + + F + + ++I ++ +G Y C+V+ +
Sbjct: 35 IKWFKGKWMDLASKAGKHLQLKETFERHSRVYT--FEMQIIKAKDNFAGNYRCEVTYKDK 92
Query: 60 KISIGYKLNV 69
S + L V
Sbjct: 93 FDSCSFDLEV 102
>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1
(ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 34.1 bits (77), Expect = 0.003
Identities = 10/93 (10%), Positives = 20/93 (21%), Gaps = 11/93 (11%)
Query: 77 IGNSELYIKSGSDINLTCVVLET-PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSR 135
+ + G + L C V P + RG + G
Sbjct: 9 LAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPA-------EVT 61
Query: 136 LVISKAVTSDSGNYTCAPSS---SDGASVVVHV 165
+ ++C G + +
Sbjct: 62 TTVLVRRDHHGAQFSCRTELDLRPQGLELFENT 94
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 33.5 bits (75), Expect = 0.003
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 3/78 (3%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ +G C + + V + I V + ++ S +
Sbjct: 13 VNAGQFATFQCSA--IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS-FNVVNTTK 69
Query: 144 SDSGNYTCAPSSSDGASV 161
D+G Y C + G +
Sbjct: 70 RDAGKYRCMIRTEGGVGI 87
Score = 25.0 bits (53), Expect = 3.3
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 29 HSDGSDEWTLKIASSQLRDSGTYECQVSTE 58
S + + ++ RD+G Y C + TE
Sbjct: 53 TSSRRFIASFNVVNTTKRDAGKYRCMIRTE 82
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 33.1 bits (74), Expect = 0.005
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
+E+ + + L C+ + Y ++ Q ++ ++ + LV
Sbjct: 10 AEVLFRENNPTVLECI--IEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS----LVFL 63
Query: 140 KAVTSDSGNYTCAPSSSDG--ASVVVHV 165
+ SD G+Y C + G +S V+
Sbjct: 64 RPQASDEGHYQCFAETPAGVASSRVISF 91
>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 32.6 bits (73), Expect = 0.007
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 13/89 (14%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
++ G+D+ C + ++ + + L I
Sbjct: 10 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP----------SRAMDFNGILTIR 59
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHV 165
SD+G Y C S+ + +HV
Sbjct: 60 NVQPSDAGTYVCTGSNMFAMDQGTATLHV 88
>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding
Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 121
Score = 32.5 bits (73), Expect = 0.013
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEP 59
RF L + TL I +++ D+G Y ++
Sbjct: 71 RFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGN 106
Score = 28.2 bits (62), Expect = 0.35
Identities = 12/53 (22%), Positives = 19/53 (35%)
Query: 100 PDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCA 152
+ + A V R ++ + QT+ L I A SD+G Y
Sbjct: 49 ISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFR 101
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 31.8 bits (71), Expect = 0.016
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
++ K+G + C+ +P + +++ N + + + +T RL+
Sbjct: 11 KDMMAKAGDVTMIYCMY--GSNPMGYPNYFK--NGKDVNGNPEDRITRHNRTSGKRLLFK 66
Query: 140 KAVTSDSGNYTCAPSSSDG----ASVVVHVL 166
+ D G YTC + G S+ + V+
Sbjct: 67 TTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97
>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 107
Score = 32.0 bits (72), Expect = 0.017
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 14/91 (15%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGAN------VVNYSQRGGISVVTEKQTRTSRLVISK 140
+++ L L P WY+G + + ++ + + + +
Sbjct: 14 DNNVLLLVHNL--PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG 71
Query: 141 AVT------SDSGNYTCAPSSSDGASVVVHV 165
++ D G YT + + V
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRRTQATV 102
Score = 29.7 bits (66), Expect = 0.085
Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 6/65 (9%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSDE------WTLKIASSQLRDSGTYECQ 54
K + + I + + S +L ++D G Y
Sbjct: 30 AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD 89
Query: 55 VSTEP 59
++ E
Sbjct: 90 MTDEN 94
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 31.9 bits (71), Expect = 0.018
Identities = 19/99 (19%), Positives = 27/99 (27%), Gaps = 20/99 (20%)
Query: 87 GSDINLTCVVLETPDPPS------------FIYWYRGANVVNYSQRGGISVVTEKQTR-- 132
G + L C + + ++ YR + Q TE
Sbjct: 17 GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESI 76
Query: 133 ---TSRLVISKAVTSDSGNYTCAPSSSDG---ASVVVHV 165
L I SD G YTC A+V + V
Sbjct: 77 GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 115
Score = 30.8 bits (68), Expect = 0.054
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 24 RFTSLHSDGSDE-WTLKIASSQLRDSGTYECQVSTE 58
R L + L+I + + D G Y C
Sbjct: 68 RTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDH 103
>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 97
Score = 29.9 bits (66), Expect = 0.078
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 85 KSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
+ + LTC P + R + ++ +
Sbjct: 20 SAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSR-------YRLVAGDLVISNPVKAK 72
Query: 145 DSGNYTCAPSSSDGASV 161
D+G+Y C +++ G V
Sbjct: 73 DAGSYQCVATNARGTVV 89
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 29.3 bits (64), Expect = 0.11
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 73 KAKII-GNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQT 131
K + S++ + I LTC P + +G+ I+ +
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 132 R--TSRLVISKAVTSDSGNYTCAPSSSDG-----ASVVVHVL 166
+S + S D+G YTC S G S+ + VL
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 93
Score = 28.8 bits (63), Expect = 0.16
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVIS 139
++ IK+G NL + PDP + + + ++ T+ +
Sbjct: 10 RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELL------VDAKSSTTSIFFP 63
Query: 140 KAVTSDSGNYTCAPSSSDG---ASVVVHV 165
A +DSGNY + G A V V
Sbjct: 64 SAKRADSGNYKLKVKNELGEDEAIFEVIV 92
>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus
musculus), beta-chain [TaxId: 10090]}
Length = 110
Score = 28.8 bits (64), Expect = 0.16
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIG 64
+ + ++L + S+ + Y C + G
Sbjct: 63 GYEASRPSQEQ-FSLILESATPSQTSVYFCASGGGGTLYFG 102
Score = 26.9 bits (59), Expect = 0.99
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 19/93 (20%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR---------------GANVVNYSQRGGIS 124
+G + L+C + + + +YWYR N G
Sbjct: 9 RNKVAVTGEKVTLSC---QQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYE 65
Query: 125 VVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSD 157
Q + S L++ A S + Y CA
Sbjct: 66 ASRPSQEQFS-LILESATPSQTSVYFCASGGGG 97
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car),
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 28.0 bits (61), Expect = 0.38
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 24 RFTSLHSDGSD-EWTLKIASSQLRDSGTYECQVSTEPKI-SIGYKLNVVI 71
R +D + ++ + + QL D GTY+C+V P + + L V++
Sbjct: 75 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 124
>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 112
Score = 27.8 bits (61), Expect = 0.39
Identities = 12/73 (16%), Positives = 24/73 (32%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
+ ++ + I++ GA + + + V+ T L + A S
Sbjct: 24 DMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQ 83
Query: 146 SGNYTCAPSSSDG 158
+ Y CA S
Sbjct: 84 TSVYFCASSYVGN 96
Score = 26.6 bits (58), Expect = 1.3
Identities = 7/47 (14%), Positives = 19/47 (40%)
Query: 10 HILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
+ + GI ++ ++++ L++ S+ + Y C S
Sbjct: 46 YSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASS 92
>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma
constant domain 3, CH3-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 102
Score = 27.3 bits (60), Expect = 0.53
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
+ + ++LTC+V + W G NY + S+L + K+
Sbjct: 18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQ 77
Query: 145 DSGNYTC 151
++C
Sbjct: 78 QGNVFSC 84
>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 127
Score = 27.0 bits (59), Expect = 0.81
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
Query: 68 NVVISKAKIIGNSELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVT 127
NV + + SE I L C+ + W+ V+ +
Sbjct: 1 NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLK 60
Query: 128 EKQ-------TRTSRLVISKAVTSDSGN-YTC 151
E+ + +SRL +S + N + C
Sbjct: 61 EQPALNDSRYSLSSRLRVSATFWQNPRNHFRC 92
>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma
constant domain 3, CH3-gamma {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 102
Score = 26.9 bits (59), Expect = 0.82
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
+ S +++TC+V P + W G NY S+L + K
Sbjct: 18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQ 77
Query: 145 DSGNYTC 151
+TC
Sbjct: 78 QGNTFTC 84
>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 118
Score = 27.1 bits (59), Expect = 0.84
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57
R + + L + + DSGTY +
Sbjct: 67 RAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEI 100
Score = 24.8 bits (53), Expect = 5.8
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 105 FIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDG 158
+ +V+ RG ++ + L++ DSG Y SD
Sbjct: 50 VVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDS 103
>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda
constant domain, CL-lambda {Hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 104
Score = 26.5 bits (58), Expect = 0.97
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
+ L C+V + + + W GA + + + S + +S L ++
Sbjct: 19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWK 78
Query: 145 DSGNYTC 151
+C
Sbjct: 79 SHNRVSC 85
>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma
constant domain 1, CH1-gamma {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 101
Score = 26.5 bits (58), Expect = 1.2
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
+ S + L C+V P + W GA + + T +S ++ T
Sbjct: 19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVL-QSGLYTLSSNTTVASG-TWP 76
Query: 146 SGNYTC 151
S + TC
Sbjct: 77 SASVTC 82
>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 26.5 bits (58), Expect = 1.2
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVSTEPKISIGYKLNVVI 71
F+++ + + L + + G Y C V + + + V+
Sbjct: 71 LFSAMRDTNNK-YVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQ 117
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 26.3 bits (57), Expect = 1.2
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 13/80 (16%)
Query: 84 IKSGSDINLTCVVL-----ETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVI 138
+ D L C + E + P ++ ++ + RL++
Sbjct: 11 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH--------FSGVKDRLIV 62
Query: 139 SKAVTSDSGNYTCAPSSSDG 158
GNYTC S +
Sbjct: 63 MNVAEKHRGNYTCHASYTYL 82
>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma
constant domain 3, CH3-gamma {Mouse (Mus musculus),
gamma2 [TaxId: 10090]}
Length = 102
Score = 26.1 bits (57), Expect = 1.5
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYR-GANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
+ + LTC+V + ++ W G +NY + S+L + K
Sbjct: 18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWV 77
Query: 145 DSGNYTC 151
+ +Y+C
Sbjct: 78 ERNSYSC 84
>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens)
[TaxId: 9606]}
Length = 80
Score = 25.6 bits (56), Expect = 1.5
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 17/83 (20%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
GS I LTC + ++ + W +G V+ K+ V SD
Sbjct: 11 LGSKILLTCSLNDSATEVTGHRWLKGGVVL-------------KEDALPGQKTEFKVDSD 57
Query: 146 --SGNYTCA--PSSSDGASVVVH 164
G Y+C P A++ +H
Sbjct: 58 DQWGEYSCVFLPEPMGTANIQLH 80
>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 108
Score = 26.0 bits (56), Expect = 2.0
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 12/91 (13%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYRGA------------NVVNYSQRGGISVVTEKQTRTS 134
G + + C T W + A + ++ +
Sbjct: 11 GQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFF 70
Query: 135 RLVISKAVTSDSGNYTCAPSSSDGASVVVHV 165
+ ++ DSG+Y C SV V
Sbjct: 71 TVTMTDLREEDSGHYWCRIYRPSDNSVSKSV 101
>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha
constant domain 2, CH2-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 25.8 bits (56), Expect = 2.2
Identities = 12/68 (17%), Positives = 25/68 (36%)
Query: 84 IKSGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVT 143
+ GS+ NLTC + D + + ++ + Q + + +S L
Sbjct: 15 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPW 74
Query: 144 SDSGNYTC 151
+ +TC
Sbjct: 75 NHGKTFTC 82
>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on
myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 25.9 bits (56), Expect = 2.3
Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 15/88 (17%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGA---------------NVVNYSQRGGIS 124
+ +K G +++ C S W + Q G I
Sbjct: 7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRII 66
Query: 125 VVTEKQTRTSRLVISKAVTSDSGNYTCA 152
+ R+ + DSG Y C
Sbjct: 67 LEDYHDHGLLRVRMVNLQVEDSGLYQCV 94
>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha
constant domain 1, CH1-alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 25.5 bits (55), Expect = 2.3
Identities = 6/67 (8%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 86 SGSDINLTCVVLETPDP-PSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTS 144
S + + C++ + + W + + + T +++L +
Sbjct: 18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECP 77
Query: 145 DSGNYTC 151
+ + C
Sbjct: 78 EGESVKC 84
>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId:
9606]}
Length = 118
Score = 25.4 bits (55), Expect = 2.8
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVST 57
F G++ T + + + + Y C++
Sbjct: 65 GFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEV 98
Score = 24.3 bits (52), Expect = 8.2
Identities = 8/96 (8%), Positives = 22/96 (22%), Gaps = 15/96 (15%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYR---------------GANVVNYSQRGGIS 124
S + + + +NL+C F + + + G +
Sbjct: 8 SPMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFN 67
Query: 125 VVTEKQTRTSRLVISKAVTSDSGNYTCAPSSSDGAS 160
+ + + + + Y C
Sbjct: 68 CDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMYPPP 103
>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human
(Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 25.2 bits (54), Expect = 3.2
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 16/107 (14%)
Query: 76 IIGNSELYIKSGSDINLTCVV-LETPDPPSFIYWYRGANV------------VNYSQRGG 122
I G E+ G+ +++TC + + + YW R V+ G
Sbjct: 3 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 62
Query: 123 ISVVTEKQTRTSRLVISKAVTSDSGNYTCA---PSSSDGASVVVHVL 166
++ + T + I++ DSG Y C S V + VL
Sbjct: 63 ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL 109
>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 25.2 bits (54), Expect = 3.8
Identities = 14/86 (16%), Positives = 22/86 (25%), Gaps = 17/86 (19%)
Query: 87 GSDINLTCVVLETPDPPSFIYWYR----------------GANVVNYSQRGGISVVTEKQ 130
G + L C V +P S W ++
Sbjct: 15 GETVELKCQV-LLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRL 73
Query: 131 TRTSRLVISKAVTSDSGNYTCAPSSS 156
T L +S + G Y C+ S+
Sbjct: 74 GDTFVLTLSDFRRENEGYYFCSALSN 99
>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 117
Score = 25.0 bits (54), Expect = 3.8
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 1 VSWIRKRDLHILTVGILTYTNDL------RFTSLHSDGSDEWTLKIASSQLRDSGTYECQ 54
V+ +R+ + + V T+T + L I + D+G Y C+
Sbjct: 34 VTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLCK 93
Query: 55 VST 57
V
Sbjct: 94 VEL 96
>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon
constant domain 4, CH4-epsilon {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 24.7 bits (53), Expect = 4.2
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 3/69 (4%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVV---NYSQRGGISVVTEKQTRTSRLVISKAV 142
S L C++ + W + +S SRL +++A
Sbjct: 18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAE 77
Query: 143 TSDSGNYTC 151
+ C
Sbjct: 78 WEQKDEFIC 86
>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus
musculus), alpha-chain [TaxId: 10090]}
Length = 113
Score = 24.8 bits (53), Expect = 5.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 24 RFTSLHSDGSDEWTLKIASSQLRDSGTYECQVS 56
++ S+ + TL I +QL DSGTY C
Sbjct: 59 LKSAFDSERARYSTLHIRDAQLEDSGTYFCAAE 91
Score = 24.4 bits (52), Expect = 7.3
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 80 SELYIKSGSDINLTCVVLETPDPPSFIYWYRGANVV--------NYSQRGGISVVTEKQT 131
S L + G+D L C T + +++ S ++
Sbjct: 9 SALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERA 68
Query: 132 RTSRLVISKAVTSDSGNYTCAPSSSDGA 159
R S L I A DSG Y CA +S G+
Sbjct: 69 RYSTLHIRDAQLEDSGTYFCAAEASSGS 96
>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma
constant domain 1, CH1-gamma {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 24.3 bits (52), Expect = 6.1
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 86 SGSDINLTCVVLETPDPPSFIYWYRGANVVNYSQRGGISVVTEKQTRTSRLVISKAVTSD 145
SGS + L C+V P + W G+ + ++ T +S + ++ + T
Sbjct: 19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVTSS-TWP 76
Query: 146 SGNYTCAPSSSDGASVVVHVLNGKKFNK 173
S + TC V H + K +K
Sbjct: 77 SQSITC---------NVAHPASSTKVDK 95
>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 96
Score = 24.0 bits (51), Expect = 7.2
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 1 VSWIRKRD-----LHILTVGILTYTNDLRFTSLHSDGSDEWTLKIASSQLRDSGTYECQV 55
+ W R+ IL + R +L I +S+ D+ +Y C
Sbjct: 24 LQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCAT 83
Query: 56 ST 57
T
Sbjct: 84 DT 85
>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 1.1
[TaxId: 10090]}
Length = 113
Score = 23.9 bits (51), Expect = 9.0
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 1 VSWIRKRDLHILTVGILTYTNDLRFTSLHSDGSD---EWTLKIASSQLRDSGTYECQVST 57
+ W ++ + I +N GS ++TLKI+ + D G Y C +
Sbjct: 39 LEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGS 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.385
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 744,554
Number of extensions: 31263
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 116
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)