BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3476
         (1417 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|383852639|ref|XP_003701834.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like
           [Megachile rotundata]
          Length = 1137

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/508 (60%), Positives = 418/508 (82%), Gaps = 11/508 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           +++ ++ L  YDV+VLDE+HERHLHGDFLLG++KC+++   ++K++LMSATINIELF  Y
Sbjct: 262 QLSGESNLLPYDVIVLDEVHERHLHGDFLLGIMKCIINQKHDLKLVLMSATINIELFSNY 321

Query: 370 FNR-IAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           F +   KII+VPGRLYPIQL Y PI +E  R K+++ +P PYI+I+ +ID+KYP  E+GD
Sbjct: 322 FAKEDVKIIQVPGRLYPIQLTYRPITIEDFRYKNDRFNPSPYIQIMQMIDQKYPADEKGD 381

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIF+SG+SEI+++V AA+EY++K   W+VLPLHSTL++ EQD+VF YAPEG RKCIVST
Sbjct: 382 LLIFLSGMSEITAVVDAAKEYSQKKNNWVVLPLHSTLAISEQDKVFDYAPEGARKCIVST 441

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           NIAETSITIDGIRFV DSGKVKEMSYD + KM  L+EFWISKASAEQRKGRAGRTGPGVC
Sbjct: 442 NIAETSITIDGIRFVCDSGKVKEMSYDPSCKMQRLKEFWISKASAEQRKGRAGRTGPGVC 501

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
           YRLYSEE+Y  L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E PP+E+IE+S+ S
Sbjct: 502 YRLYSEEEYMALEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPPSESIENSILS 561

Query: 608 LTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTN 667
           L +HGA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ VLSLAA LS+Q+PFTN
Sbjct: 562 LKEHGALTDNEKITCIGKTLARLPVDITIGKMLIMGSVFHQVEPVLSLAAALSIQTPFTN 621

Query: 668 RAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR--------SKKWCKRRGIE 719
           RA+RD +CET+RK+LES+HGDP+T+LNA++EWL VK+   +        S+KWCKRRG+E
Sbjct: 622 RAYRDSECETSRKKLESDHGDPITLLNAFREWLEVKQQNSQESRGTGTSSRKWCKRRGLE 681

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
           EQRFYE+ KLR+QFK++L D  L+ ++P P++S+SS ERA+RHGE+KLL+++KR   +  
Sbjct: 682 EQRFYEMIKLRAQFKELLQDCNLLKNLPEPNSSMSSAERAIRHGELKLLKSLKRTYKQSE 741

Query: 780 PKRRKMLKADNAYEIEEEEEEEEGERLE 807
           P++RK LK + +++I+ E+ + + + ++
Sbjct: 742 PRKRKQLKLE-SFDIQLEDNDNDDKEID 768



 Score =  209 bits (533), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 111/127 (87%)

Query: 16  YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL 75
           YLDFKQKEKF+ L K+RE+Q +LPV QYKQEI +T+ KERVVIIAGDTGCGKSTQ+PQYL
Sbjct: 139 YLDFKQKEKFAKLKKLRESQTNLPVHQYKQEITETIKKERVVIIAGDTGCGKSTQVPQYL 198

Query: 76  VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
             AGFQ+IACTQPRRIACISL+KRVA+ETL++  N VGYQIRFEK R + TKI FITEGL
Sbjct: 199 YSAGFQKIACTQPRRIACISLAKRVAFETLTENCNEVGYQIRFEKQRNQNTKITFITEGL 258

Query: 136 LLRQDSG 142
           LLRQ SG
Sbjct: 259 LLRQLSG 265



 Score =  197 bits (502), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/267 (40%), Positives = 162/267 (60%), Gaps = 35/267 (13%)

Query: 1180 KDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPF 1239
            ++LL  ++A S+KD+T+LK+IL SGLYPQ A  DEFN  +++ E LFH K K +++LHP 
Sbjct: 784  QNLLIAASACSYKDLTMLKLILCSGLYPQFACADEFNYCKSMSEQLFHTKAKPYIALHPM 843

Query: 1240 SVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPA 1299
            S F + P VL++ E DIV   PG K   ++ +S KH +L Y+SLLET+KP+LVN LRMPA
Sbjct: 844  SFFGNHPQVLQLEETDIVS-IPGYK--SKSPVSPKHTILAYLSLLETTKPYLVNTLRMPA 900

Query: 1300 LQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAKST---------------------- 1337
             QTLLLF+  I TNS F+ +V DSW+ +  P+ ++  T                      
Sbjct: 901  AQTLLLFAREIDTNSTFSIIVCDSWLALEFPVPDSGQTLLMKATKLRYKWDFLLNQRLQD 960

Query: 1338 --------ADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGS 1389
                     D +++E++LT++L+ +M   T + Y+++RLL ADLKT+Y  +   +    S
Sbjct: 961  PNTNDSEKQDFSEIEYTLTQELIDYMH--TTIPYTLKRLLPADLKTIYTGSNENNISIDS 1018

Query: 1390 NPFVAEFPMVVEETLGGVRVTPYLVYD 1416
            NPF ++F ++     GGV VT  + Y+
Sbjct: 1019 NPFQSDFVVIPNLIKGGVYVTNIITYN 1045



 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 97/120 (80%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLYSEE+Y  L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E PP+E+
Sbjct: 495 RTGPGVCYRLYSEEEYMALEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPPSES 554

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE+S+ SL +HGA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+
Sbjct: 555 IENSILSLKEHGALTDNEKITCIGKTLARLPVDITIGKMLIMGSVFHQVEPVLSLAAALS 614



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 53/63 (84%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q++ ++ L  YDV+VLDE+HERHLHGDFLLG++KC+++   ++K++LMSATINIELF  Y
Sbjct: 262  QLSGESNLLPYDVIVLDEVHERHLHGDFLLGIMKCIINQKHDLKLVLMSATINIELFSNY 321

Query: 1175 FNR 1177
            F +
Sbjct: 322  FAK 324



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 66/91 (72%), Gaps = 4/91 (4%)

Query: 137 LRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIE 196
           L QD  L+ ++P P++S+SS ERA+RHGE+KLL+++KR   +  P++RK LK + +++I+
Sbjct: 698 LLQDCNLLKNLPEPNSSMSSAERAIRHGELKLLKSLKRTYKQSEPRKRKQLKLE-SFDIQ 756

Query: 197 EEEEEEEGERLESMDANEVEFRLKHDPKQVQ 227
            E+ + + + +   D  +VEFR+++DP QVQ
Sbjct: 757 LEDNDNDDKEI---DIKDVEFRMRNDPNQVQ 784



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+    F + +  
Sbjct: 566  GALTDNEKITCIGKTLARLPVDITIGKMLIMGSVFHQVEPVLSLAAALSIQTPFTNRAYR 625

Query: 1086 EEE-EEAGERLES 1097
            + E E + ++LES
Sbjct: 626  DSECETSRKKLES 638



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 37/49 (75%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+
Sbjct: 566  GALTDNEKITCIGKTLARLPVDITIGKMLIMGSVFHQVEPVLSLAAALS 614



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 29/33 (87%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q++ ++ L  YD+++LDEVHERHL+GDFLLG++
Sbjct: 262 QLSGESNLLPYDVIVLDEVHERHLHGDFLLGIM 294


>gi|307210533|gb|EFN87023.1| Probable ATP-dependent RNA helicase DHX34 [Harpegnathos saltator]
          Length = 1163

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/507 (60%), Positives = 415/507 (81%), Gaps = 13/507 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           +V+ ++ +S YDV+VLDE+HERHLHGD LLG++KC+++    +K++LMSATINIELF+ Y
Sbjct: 284 QVSGESAVSVYDVVVLDEVHERHLHGDLLLGIMKCIIYQNPNLKLVLMSATINIELFNNY 343

Query: 370 FNR-IAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           F +   K I+VPGRLYPIQL Y P+ +E  + K+++ +P PY++IL IID+KYP  E+GD
Sbjct: 344 FAKEDVKTIEVPGRLYPIQLMYRPVTIEDMKYKNDRFNPSPYVQILQIIDQKYPSDEKGD 403

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIF+SG++EI+++V AA+EY++K   WI+LPLHSTLS+ EQD+VF Y PEG+RKCIV+T
Sbjct: 404 LLIFLSGMNEITTVVDAAKEYSKKKNNWIILPLHSTLSIAEQDKVFDYVPEGVRKCIVAT 463

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           NIAETSITIDGIRFV DSGKVKEMSYD + KM  L+EFWISKASAEQRKGRAGRTGPGVC
Sbjct: 464 NIAETSITIDGIRFVADSGKVKEMSYDPSCKMQRLKEFWISKASAEQRKGRAGRTGPGVC 523

Query: 548 YR-LYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           YR +YSEE+Y +L +YSTPE++RVS+DS  L ++ MGL D RKFPF+E PPA +IE+++ 
Sbjct: 524 YRQIYSEEEYKILEKYSTPELQRVSLDSSALQMIAMGLPDARKFPFIEPPPANSIENAIL 583

Query: 607 SLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFT 666
           SL  HGA+   E++T +G+ L+ LPVDI +GKML+ GS+FH+++ VLSLAA LS+Q+PFT
Sbjct: 584 SLKDHGALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHEVEPVLSLAAALSIQTPFT 643

Query: 667 NRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR--------SKKWCKRRGI 718
           NRA+RD +CET+RK+LES+HGDP+T+LNA+KEWL VK++  +        S+KWC+RRG+
Sbjct: 644 NRAYRDTECETSRKKLESDHGDPITLLNAFKEWLEVKQENSQEYRSSGNSSRKWCRRRGL 703

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE 778
           EEQRFYE+TKLRSQFK++L D  L+  IP P++S++S ERA+RHGE+KLL+++KR   + 
Sbjct: 704 EEQRFYEMTKLRSQFKELLQDCNLLKGIPEPNSSMTSAERAIRHGELKLLKSLKRNYKQN 763

Query: 779 APKRRKMLKADNAYEIE-EEEEEEEGE 804
            P++RK LK D  +EI+ E+ +E+ GE
Sbjct: 764 EPRKRKQLKID-TFEIQLEDNDEDNGE 789



 Score =  202 bits (515), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/127 (74%), Positives = 110/127 (86%)

Query: 16  YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL 75
           YLDFKQKEKF+ L K+R+ Q +LPVAQYK +II+ V +E+VVIIAGDTGCGKSTQIPQYL
Sbjct: 161 YLDFKQKEKFNKLKKLRDMQANLPVAQYKDKIIEMVKREKVVIIAGDTGCGKSTQIPQYL 220

Query: 76  VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
            + GFQ+IACTQPRRIACISL+KRVA+ETLS+  N VGYQIRFEK R ++T I FITEGL
Sbjct: 221 YKGGFQKIACTQPRRIACISLAKRVAFETLSENFNTVGYQIRFEKQRNQQTNITFITEGL 280

Query: 136 LLRQDSG 142
           LLRQ SG
Sbjct: 281 LLRQVSG 287



 Score =  196 bits (499), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 114/274 (41%), Positives = 157/274 (57%), Gaps = 41/274 (14%)

Query: 1180 KDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPF 1239
            ++LL+ +TA S+KD+T+LK+IL SGLYPQ A  DEFN  +++ E LFH K K +V LHP 
Sbjct: 807  QNLLTAATACSYKDLTMLKIILCSGLYPQFACADEFNYCKSMSEQLFHTKAKQYVLLHPM 866

Query: 1240 SVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPA 1299
            S F + P+VL++ E D+V    G K   +  +S KHQ+L Y+SLLET+KP+LVN LRMPA
Sbjct: 867  SFFGNHPEVLQVEEVDVVS-ISGFK--SKTPVSPKHQILAYLSLLETTKPYLVNTLRMPA 923

Query: 1300 LQTLLLFSSAIHTNSDFTRLVFDSWIEVFVP--------------------------LQE 1333
             QTLLLF+  I TNS F+ +  DSW+ +  P                          LQ 
Sbjct: 924  AQTLLLFAREIDTNSTFSIIACDSWLMLEFPVPDTGQTLLMKATKLRNEWDFLLNHQLQV 983

Query: 1334 AKSTADVNQ----LEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGS 1389
            +  T D  Q    +E SLTR L+++M+  T + Y+I+RLL ADLKT+Y      +     
Sbjct: 984  SDETNDTKQDFSKIEQSLTRKLIEYMN--TTIPYTIKRLLPADLKTIYVGNKNNNISIEP 1041

Query: 1390 NPFVAEFPMVVEETLGGVRVTPYLVY------DW 1417
            NPF ++F        GG+ VT  + Y      DW
Sbjct: 1042 NPFKSDFKSTPNVVKGGIYVTENITYNCMKETDW 1075



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 94/120 (78%), Gaps = 1/120 (0%)

Query: 809 RTGPGVCYR-LYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPGVCYR +YSEE+Y +L +YSTPE++RVS+DS  L ++ MGL D RKFPF+E PPA 
Sbjct: 517 RTGPGVCYRQIYSEEEYKILEKYSTPELQRVSLDSSALQMIAMGLPDARKFPFIEPPPAN 576

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           +IE+++ SL  HGA+   E++T +G+ L+ LPVDI +GKML+ GS+FH+++ +L L  AL
Sbjct: 577 SIENAILSLKDHGALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHEVEPVLSLAAAL 636



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 53/63 (84%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            QV+ ++ +S YDV+VLDE+HERHLHGD LLG++KC+++    +K++LMSATINIELF+ Y
Sbjct: 284  QVSGESAVSVYDVVVLDEVHERHLHGDLLLGIMKCIIYQNPNLKLVLMSATINIELFNNY 343

Query: 1175 FNR 1177
            F +
Sbjct: 344  FAK 346



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 65/92 (70%), Gaps = 6/92 (6%)

Query: 137 LRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIE 196
           L QD  L+  IP P++S++S ERA+RHGE+KLL+++KR   +  P++RK LK D  +EI+
Sbjct: 721 LLQDCNLLKGIPEPNSSMTSAERAIRHGELKLLKSLKRNYKQNEPRKRKQLKID-TFEIQ 779

Query: 197 -EEEEEEEGERLESMDANEVEFRLKHDPKQVQ 227
            E+ +E+ GE    +D  ++EFR+++D  QVQ
Sbjct: 780 LEDNDEDNGE----LDIKDIEFRMRNDSNQVQ 807



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 49/73 (67%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+   E++T +G+ L+ LPVDI +GKML+ GS+FH+++ +L L  AL+    F + +  
Sbjct: 589  GALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHEVEPVLSLAAALSIQTPFTNRAYR 648

Query: 1086 EEE-EEAGERLES 1097
            + E E + ++LES
Sbjct: 649  DTECETSRKKLES 661



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 36/48 (75%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 1027
            GA+   E++T +G+ L+ LPVDI +GKML+ GS+FH+++ +L L  AL
Sbjct: 589  GALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHEVEPVLSLAAAL 636



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 29/33 (87%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           QV+ ++ +S YD+++LDEVHERHL+GD LLG++
Sbjct: 284 QVSGESAVSVYDVVVLDEVHERHLHGDLLLGIM 316


>gi|328702328|ref|XP_001950822.2| PREDICTED: probable ATP-dependent RNA helicase DHX34-like
           [Acyrthosiphon pisum]
          Length = 1120

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/498 (61%), Positives = 408/498 (81%), Gaps = 6/498 (1%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           +V  ++ LS YDV+VLDEIHERHLHGDFLLGV+KCLLH  ++VK++LMSATIN++LF  Y
Sbjct: 260 QVCGEDLLSQYDVIVLDEIHERHLHGDFLLGVMKCLLHQRSDVKLVLMSATINVDLFSKY 319

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRT---KSEKLDPGPYIRILSIIDKKYPRTERG 426
           F+ +AK+I+VPGRLYPI+LEYHPI+   +    KSE+ DP P+I+I+ +IDKKYP+ ERG
Sbjct: 320 FSPLAKLIQVPGRLYPIKLEYHPIISEMKVLGKKSERFDPSPFIKIMQMIDKKYPKHERG 379

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           DVL+F+SG++EI+++V AA+ Y EK+  WI+LPLHS++SL EQD+VF YAPEG RKCIVS
Sbjct: 380 DVLMFLSGMAEITAVVDAARIYCEKNDTWIILPLHSSMSLGEQDKVFDYAPEGTRKCIVS 439

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TNIAETSITIDGIRFV+DSGKVKEMSYD T+K+  L+EFW+SKASA+QRKGRAGRTGPGV
Sbjct: 440 TNIAETSITIDGIRFVIDSGKVKEMSYDSTSKVQRLKEFWVSKASADQRKGRAGRTGPGV 499

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           CYRLYSE+++  +A+YSTPE+++V +D+LLL +V MGL + R FPF+E P  ENIE+++ 
Sbjct: 500 CYRLYSEDEFDAMADYSTPELQKVPLDALLLQMVAMGLPNARLFPFIEPPQPENIENAIE 559

Query: 607 SLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFT 666
           SL QHGA+  +ER+T +G  LS LPVDIPLGKML+ GS+F Q++ VLSLA VLSVQ+PFT
Sbjct: 560 SLKQHGALTKEERLTPIGNMLSRLPVDIPLGKMLIMGSLFDQLEPVLSLACVLSVQTPFT 619

Query: 667 NRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKD--RVRSKKWCKRRGIEEQRFY 724
           N+A++DP+CE AR +LES+HGDP+ +LNA+K+WL +K D     +++WCKRRG EEQRFY
Sbjct: 620 NKAYKDPECERARMDLESDHGDPIILLNAFKQWLELKSDGQNTNTRQWCKRRGFEEQRFY 679

Query: 725 EVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRK 784
           E+TKLR QFK +L + GL+ +       ++S ERALRHGE+KLL+ +K+   EE  ++RK
Sbjct: 680 EMTKLRRQFKDLLDECGLVKNEEKNMDDMTSAERALRHGELKLLRGMKKTHKEEDSRKRK 739

Query: 785 MLKADNAYEIEEEEEEEE 802
           +LK D  +EIE+  + E+
Sbjct: 740 VLKKD-MWEIEDNLDAED 756



 Score =  224 bits (570), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 124/274 (45%), Positives = 173/274 (63%), Gaps = 29/274 (10%)

Query: 1167 NIELFHTYFNRIAKDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALF 1226
            +I+    +  R  K LL GSTA S+KD+ +LK+IL+SGLYP +AI DEFN+ +T KE LF
Sbjct: 763  DIDFRMRHNQRQVKQLLKGSTAISYKDLMMLKIILSSGLYPHIAITDEFNSCKTTKEHLF 822

Query: 1227 HCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLET 1286
            H + K FVSLHP S F +  DVL+++E +I+  P   +  G+N +SSKHQ+L+YMSLLET
Sbjct: 823  HTEGKPFVSLHPMSYFGNHSDVLQLTESEIIYVP---EFKGKNTVSSKHQILIYMSLLET 879

Query: 1287 SKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEA------KSTADV 1340
            +K +++N LRMP  QTLLLFS  I TN +F++++ DSW+++  PL EA      K+T   
Sbjct: 880  TKAYIMNSLRMPGAQTLLLFSRNICTNRNFSQIICDSWLQLEFPLPEAAENLILKATKLR 939

Query: 1341 N----------------QLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMY-RRTGAE 1383
            N                + E  L+ D+VQFM++   + Y+++RLLAAD K MY   +G E
Sbjct: 940  NTWDNLLKLKLEERSNRRAERQLSIDMVQFMNA--EIGYTMKRLLAADQKVMYVGPSGEE 997

Query: 1384 SGVPGSNPFVAEFPMVVE-ETLGGVRVTPYLVYD 1416
                G NPF  E   V E +  GG+R+ PYL YD
Sbjct: 998  ITFTGPNPFCGEDWQVYEDDKYGGIRLAPYLTYD 1031



 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 113/135 (83%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           +++ L+  Y+DFKQKEKF+ L K+RETQ +LPV Q+K EII+ V   RVVIIAGDTGCGK
Sbjct: 129 KFRQLVLMYMDFKQKEKFNKLKKLRETQQNLPVFQFKDEIIEAVRHHRVVIIAGDTGCGK 188

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQIPQYL  AGF+RIACTQPRRIACISLSKRVAYE+LS ++N VGYQIRFEK   + TK
Sbjct: 189 STQIPQYLSNAGFKRIACTQPRRIACISLSKRVAYESLSIHNNDVGYQIRFEKTVNKDTK 248

Query: 128 IVFITEGLLLRQDSG 142
           I+F+TEGLLLRQ  G
Sbjct: 249 ILFLTEGLLLRQVCG 263



 Score =  153 bits (387), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 68/120 (56%), Positives = 94/120 (78%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLYSE+++  +A+YSTPE+++V +D+LLL +V MGL + R FPF+E P  EN
Sbjct: 494 RTGPGVCYRLYSEDEFDAMADYSTPELQKVPLDALLLQMVAMGLPNARLFPFIEPPQPEN 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE+++ SL QHGA+  +ER+T +G  LS LPVDIPLGKML+ GS+F Q++ +L L   L+
Sbjct: 554 IENAIESLKQHGALTKEERLTPIGNMLSRLPVDIPLGKMLIMGSLFDQLEPVLSLACVLS 613



 Score =  103 bits (257), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 45/66 (68%), Positives = 57/66 (86%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            QV  ++ LS YDV+VLDEIHERHLHGDFLLGV+KCLLH  ++VK++LMSATIN++LF  Y
Sbjct: 260  QVCGEDLLSQYDVIVLDEIHERHLHGDFLLGVMKCLLHQRSDVKLVLMSATINVDLFSKY 319

Query: 1175 FNRIAK 1180
            F+ +AK
Sbjct: 320  FSPLAK 325



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 81/137 (59%), Gaps = 10/137 (7%)

Query: 118 FEKHR-REKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKK 176
           FE+ R  E TK+    + LL   + GL+ +       ++S ERALRHGE+KLL+ +K+  
Sbjct: 673 FEEQRFYEMTKLRRQFKDLL--DECGLVKNEEKNMDDMTSAERALRHGELKLLRGMKKTH 730

Query: 177 AEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQ--VATDNFL 234
            EE  ++RK+LK D  +EIE+  + E+    +S+D  +++FR++H+ +QV+  +     +
Sbjct: 731 KEEDSRKRKVLKKD-MWEIEDNLDAED----DSVDIRDIDFRMRHNQRQVKQLLKGSTAI 785

Query: 235 SSYDILILDEVHERHLY 251
           S  D+++L  +    LY
Sbjct: 786 SYKDLMMLKIILSSGLY 802



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 20/156 (12%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEI--------VAADYFLSS 278
           QV  ++ LS YD+++LDE+HERHL+GDFLLGV+   LH   ++        +  D F   
Sbjct: 260 QVCGEDLLSQYDVIVLDEIHERHLHGDFLLGVMKCLLHQRSDVKLVLMSATINVDLFSKY 319

Query: 279 YDVL-----VLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHL 333
           +  L     V   ++   L    ++  +K L   +       F+    + ++D+ + +H 
Sbjct: 320 FSPLAKLIQVPGRLYPIKLEYHPIISEMKVLGKKSERFDPSPFIKI--MQMIDKKYPKHE 377

Query: 334 HGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            GD L+      L   AE+  ++ +A I  E   T+
Sbjct: 378 RGDVLM-----FLSGMAEITAVVDAARIYCEKNDTW 408



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 36/49 (73%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+  +ER+T +G  LS LPVDIPLGKML+ GS+F Q++ +L L   L+
Sbjct: 565  GALTKEERLTPIGNMLSRLPVDIPLGKMLIMGSLFDQLEPVLSLACVLS 613



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 36/49 (73%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+  +ER+T +G  LS LPVDIPLGKML+ GS+F Q++ +L L   L+
Sbjct: 565  GALTKEERLTPIGNMLSRLPVDIPLGKMLIMGSLFDQLEPVLSLACVLS 613


>gi|340714789|ref|XP_003395906.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DHX34-like [Bombus terrestris]
          Length = 1141

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/496 (61%), Positives = 412/496 (83%), Gaps = 12/496 (2%)

Query: 320 YDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR-IAKIIK 378
           YDV+VLDE+HERHLHGDFLLG++KC+++   ++K++LMSATINIELF+ YF++   K+I+
Sbjct: 277 YDVIVLDEVHERHLHGDFLLGIMKCIINQRQDLKLVLMSATINIELFNNYFSKENVKVIQ 336

Query: 379 VPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE 437
           VPGRLYPIQL Y P+ +E  R K+++ +P PYI+I+ IID+KYP  E+GD+LIF+SG+SE
Sbjct: 337 VPGRLYPIQLLYRPVTIEDIRYKNDRFNPSPYIQIMQIIDQKYPAEEKGDLLIFLSGMSE 396

Query: 438 ISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497
           I+++V AA+EY++K   WI+L LHSTL++ EQD+VF +APEG+RKCIVSTNIAETSITID
Sbjct: 397 ITAVVDAAKEYSQKKNNWIILALHSTLAISEQDKVFDFAPEGVRKCIVSTNIAETSITID 456

Query: 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557
           GIRFV DSGKVKEMSYD + KM  L+EFWISKASAEQRKGRAGRTGPGVCYRLYSEE+Y 
Sbjct: 457 GIRFVADSGKVKEMSYDPSCKMQRLKEFWISKASAEQRKGRAGRTGPGVCYRLYSEEEYM 516

Query: 558 LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSK 617
            L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E P  ENIE+S+ SL +HGA+   
Sbjct: 517 SLEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPSPENIENSILSLKEHGALTDN 576

Query: 618 ERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCET 677
           E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ VLSLAA LS+Q+PFTNRA+RD +CET
Sbjct: 577 EKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALSIQTPFTNRAYRDSECET 636

Query: 678 ARKELESNHGDPLTVLNAYKEWLGVKKDRVR--------SKKWCKRRGIEEQRFYEVTKL 729
           +RK+LES+HGDP+T+LNA++EWL VK+   +        S+KWCKRRG+EEQRFYE+TKL
Sbjct: 637 SRKKLESDHGDPITLLNAFREWLEVKQQSSQESRGSGNSSRKWCKRRGLEEQRFYEMTKL 696

Query: 730 RSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKAD 789
           R+QFK++L D  L+  +P P++S+SS ERA+RHGE+KLL+++KR   +  P++RK LK +
Sbjct: 697 RAQFKELLQDCKLLRSLPEPNSSMSSAERAIRHGELKLLKSLKRTYKQSEPRKRKQLKLE 756

Query: 790 NAYEIE-EEEEEEEGE 804
            +++I+ E+ + ++GE
Sbjct: 757 -SFDIQLEDNDHDDGE 771



 Score =  216 bits (549), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 117/267 (43%), Positives = 165/267 (61%), Gaps = 35/267 (13%)

Query: 1180 KDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPF 1239
            ++LL+ +TA S+KD+T+LK+IL SGLYPQ A  DEFN  +T  E LFH K K +++LHP 
Sbjct: 789  QNLLTAATACSYKDLTMLKLILCSGLYPQFACADEFNYCKTTNEQLFHTKAKPYIALHPM 848

Query: 1240 SVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPA 1299
            S F + P VL++ E DIV   PG K   +  +S KH +L Y+SLLET+KP+LVN LRMPA
Sbjct: 849  SFFGNHPQVLQLEEADIVS-IPGFK--SKTAVSPKHTILTYLSLLETTKPYLVNTLRMPA 905

Query: 1300 LQTLLLFSSAIHTNSDFTRLVFDSWIEVFVP--------------------------LQE 1333
             QTLLLF+  I TNS F+ +V DSW+E+  P                          LQ+
Sbjct: 906  AQTLLLFTREIDTNSTFSIIVCDSWLELKFPIPDSGQILLMKATKLRHKWDFLLNQQLQD 965

Query: 1334 AKSTADVNQ----LEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGS 1389
            + ++ D NQ     E++LTRDL+++M   T + Y+++RLL ADLKT+Y   G  + +   
Sbjct: 966  SSTSNDENQDFSEFEYTLTRDLIEYMH--TTVPYTLKRLLPADLKTIYVGCGENNILIDP 1023

Query: 1390 NPFVAEFPMVVEETLGGVRVTPYLVYD 1416
            NPF ++F ++     GGVRVT  + Y+
Sbjct: 1024 NPFQSDFVVIPNSIKGGVRVTNTITYN 1050



 Score =  202 bits (515), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/133 (72%), Positives = 113/133 (84%)

Query: 16  YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL 75
           YLDFKQKEKF+ L K+R++Q +LPV QYK EII+T+ +E+VVIIAGDTGCGKSTQ+PQYL
Sbjct: 144 YLDFKQKEKFAKLKKLRKSQVNLPVYQYKHEIIETIKQEQVVIIAGDTGCGKSTQVPQYL 203

Query: 76  VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
             AGFQ+IACTQPRRIACISL+KRVA+ETL++  N VGYQIRFEK R + TKI FITEGL
Sbjct: 204 YAAGFQKIACTQPRRIACISLAKRVAFETLTENCNDVGYQIRFEKQRNQNTKITFITEGL 263

Query: 136 LLRQDSGLITDIP 148
           LLRQ SG    +P
Sbjct: 264 LLRQLSGEFELLP 276



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 95/120 (79%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLYSEE+Y  L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E P  EN
Sbjct: 500 RTGPGVCYRLYSEEEYMSLEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPSPEN 559

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE+S+ SL +HGA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+
Sbjct: 560 IENSILSLKEHGALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALS 619



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 54/63 (85%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q++ +  L  YDV+VLDE+HERHLHGDFLLG++KC+++   ++K++LMSATINIELF+ Y
Sbjct: 267  QLSGEFELLPYDVIVLDEVHERHLHGDFLLGIMKCIINQRQDLKLVLMSATINIELFNNY 326

Query: 1175 FNR 1177
            F++
Sbjct: 327  FSK 329



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 67/92 (72%), Gaps = 6/92 (6%)

Query: 137 LRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIE 196
           L QD  L+  +P P++S+SS ERA+RHGE+KLL+++KR   +  P++RK LK + +++I+
Sbjct: 703 LLQDCKLLRSLPEPNSSMSSAERAIRHGELKLLKSLKRTYKQSEPRKRKQLKLE-SFDIQ 761

Query: 197 -EEEEEEEGERLESMDANEVEFRLKHDPKQVQ 227
            E+ + ++GE    +D  ++EFR+K+DP QVQ
Sbjct: 762 LEDNDHDDGE----IDIKDIEFRMKNDPNQVQ 789



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+    F + +  
Sbjct: 571  GALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALSIQTPFTNRAYR 630

Query: 1086 EEE-EEAGERLES 1097
            + E E + ++LES
Sbjct: 631  DSECETSRKKLES 643



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 37/49 (75%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+
Sbjct: 571  GALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALS 619



 Score = 47.4 bits (111), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 17/23 (73%), Positives = 23/23 (100%)

Query: 237 YDILILDEVHERHLYGDFLLGVI 259
           YD+++LDEVHERHL+GDFLLG++
Sbjct: 277 YDVIVLDEVHERHLHGDFLLGIM 299


>gi|350415039|ref|XP_003490513.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Bombus
           impatiens]
          Length = 1159

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/496 (61%), Positives = 412/496 (83%), Gaps = 12/496 (2%)

Query: 320 YDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR-IAKIIK 378
           YDV+VLDE+HERHLHGDFLLG++KC+++   ++K++LMSATINIELF+ YF++   K+I+
Sbjct: 295 YDVIVLDEVHERHLHGDFLLGIMKCIINQRQDLKLVLMSATINIELFNNYFSKENVKVIQ 354

Query: 379 VPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE 437
           VPGRLYPIQL Y P+ +E  R K+++ +P PYI+I+ +ID+KYP  E+GD+LIF+SG+SE
Sbjct: 355 VPGRLYPIQLLYRPVTIEDIRYKNDRFNPSPYIQIMQMIDQKYPAEEKGDLLIFLSGMSE 414

Query: 438 ISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497
           I+++V AA+EY++K   WI+L LHSTL++ EQD+VF +APEG+RKCIVSTNIAETSITID
Sbjct: 415 ITAVVDAAKEYSQKKNNWIILALHSTLAISEQDKVFDFAPEGVRKCIVSTNIAETSITID 474

Query: 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557
           GIRFV DSGKVKEMSYD + KM  L+EFWISKASAEQRKGRAGRTGPGVCYRLYSEE+Y 
Sbjct: 475 GIRFVADSGKVKEMSYDPSCKMQRLKEFWISKASAEQRKGRAGRTGPGVCYRLYSEEEYM 534

Query: 558 LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSK 617
            L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E P  ENIE+S+ SL +HGA+   
Sbjct: 535 SLEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPSPENIENSILSLKEHGALTDN 594

Query: 618 ERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCET 677
           E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ VLSLAA LS+Q+PFTNRA+RD +CET
Sbjct: 595 EKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALSIQTPFTNRAYRDSECET 654

Query: 678 ARKELESNHGDPLTVLNAYKEWLGVKKDRVR--------SKKWCKRRGIEEQRFYEVTKL 729
           +RK+LES+HGDP+T+LNA++EWL VK+   +        S+KWCKRRG+EEQRFYE+TKL
Sbjct: 655 SRKKLESDHGDPITLLNAFREWLEVKQQSSQESRGSGNSSRKWCKRRGLEEQRFYEMTKL 714

Query: 730 RSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKAD 789
           R+QFK++L D  L+  +P P++S+SS ERA+RHGE+KLL+++KR   +  P++RK LK +
Sbjct: 715 RAQFKELLQDCKLLRSLPEPNSSMSSAERAIRHGELKLLKSLKRTYKQSEPRKRKQLKLE 774

Query: 790 NAYEIE-EEEEEEEGE 804
            +++I+ E+ + ++GE
Sbjct: 775 -SFDIQLEDNDHDDGE 789



 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 116/267 (43%), Positives = 165/267 (61%), Gaps = 35/267 (13%)

Query: 1180 KDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPF 1239
            ++LL+ +TA S+KD+T+LK+IL SGLYPQ A  DEFN  +T  E LFH K K +++LHP 
Sbjct: 807  QNLLTAATACSYKDLTMLKLILCSGLYPQFACADEFNYCKTTNEQLFHTKAKPYIALHPM 866

Query: 1240 SVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPA 1299
            S F + P VL++ E DIV   PG K   +  +S KH +L Y+SLLET+KP+LVN LRMPA
Sbjct: 867  SFFGNHPQVLQLEEADIVS-IPGFK--SKTAVSPKHTILTYLSLLETTKPYLVNTLRMPA 923

Query: 1300 LQTLLLFSSAIHTNSDFTRLVFDSWIEVFVP--------------------------LQE 1333
             QTLLLF+  I TNS F+ ++ DSW+E+  P                          LQ+
Sbjct: 924  AQTLLLFTREIDTNSTFSIMICDSWLELKFPIPDSGQILLMKATKLRHKWDFLLNQQLQD 983

Query: 1334 AKSTADVNQ----LEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGS 1389
            + ++ D NQ     E++LT+DL+++M   T + Y+++RLL ADLKT+Y   G  S +   
Sbjct: 984  SSTSNDENQDFSEFEYTLTQDLIEYMH--TTVPYTLKRLLPADLKTIYVGCGENSILIDP 1041

Query: 1390 NPFVAEFPMVVEETLGGVRVTPYLVYD 1416
            NPF ++F ++     GGVRVT  + Y+
Sbjct: 1042 NPFQSDFVVIPNSIKGGVRVTNTITYN 1068



 Score =  202 bits (515), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 96/133 (72%), Positives = 113/133 (84%)

Query: 16  YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL 75
           YLDFKQKEKF+ L K+R++Q +LPV QYK EII+T+ +E+VVIIAGDTGCGKSTQ+PQYL
Sbjct: 162 YLDFKQKEKFAKLKKLRKSQVNLPVYQYKHEIIETIKQEQVVIIAGDTGCGKSTQVPQYL 221

Query: 76  VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
             AGFQ+IACTQPRRIACISL+KRVA+ETL++  N VGYQIRFEK R + TKI FITEGL
Sbjct: 222 YTAGFQKIACTQPRRIACISLAKRVAFETLTENCNDVGYQIRFEKQRNQNTKITFITEGL 281

Query: 136 LLRQDSGLITDIP 148
           LLRQ SG    +P
Sbjct: 282 LLRQLSGEFELLP 294



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 95/120 (79%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLYSEE+Y  L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E P  EN
Sbjct: 518 RTGPGVCYRLYSEEEYMSLEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPSPEN 577

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE+S+ SL +HGA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+
Sbjct: 578 IENSILSLKEHGALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALS 637



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 54/63 (85%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q++ +  L  YDV+VLDE+HERHLHGDFLLG++KC+++   ++K++LMSATINIELF+ Y
Sbjct: 285  QLSGEFELLPYDVIVLDEVHERHLHGDFLLGIMKCIINQRQDLKLVLMSATINIELFNNY 344

Query: 1175 FNR 1177
            F++
Sbjct: 345  FSK 347



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 67/92 (72%), Gaps = 6/92 (6%)

Query: 137 LRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIE 196
           L QD  L+  +P P++S+SS ERA+RHGE+KLL+++KR   +  P++RK LK + +++I+
Sbjct: 721 LLQDCKLLRSLPEPNSSMSSAERAIRHGELKLLKSLKRTYKQSEPRKRKQLKLE-SFDIQ 779

Query: 197 -EEEEEEEGERLESMDANEVEFRLKHDPKQVQ 227
            E+ + ++GE    +D  ++EFR+K+DP QVQ
Sbjct: 780 LEDNDHDDGE----IDIKDIEFRMKNDPNQVQ 807



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+    F + +  
Sbjct: 589  GALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALSIQTPFTNRAYR 648

Query: 1086 EEE-EEAGERLES 1097
            + E E + ++LES
Sbjct: 649  DSECETSRKKLES 661



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 37/49 (75%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+
Sbjct: 589  GALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALS 637



 Score = 47.4 bits (111), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 17/23 (73%), Positives = 23/23 (100%)

Query: 237 YDILILDEVHERHLYGDFLLGVI 259
           YD+++LDEVHERHL+GDFLLG++
Sbjct: 295 YDVIVLDEVHERHLHGDFLLGIM 317


>gi|322802023|gb|EFZ22560.1| hypothetical protein SINV_16346 [Solenopsis invicta]
          Length = 1220

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/517 (59%), Positives = 416/517 (80%), Gaps = 23/517 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           +V+ ++ LS+YDV+VLDEIHERHLHGDFL+G++KC+++   ++K++LMSATINIELF  Y
Sbjct: 332 QVSGESTLSAYDVIVLDEIHERHLHGDFLMGIMKCIIYQQPDLKLVLMSATINIELFSNY 391

Query: 370 FNR-IAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           F +   KI++VPGRLYPIQL Y P+ VE    K+++ +P PY++I+ +ID+KYP  E+GD
Sbjct: 392 FAKENVKIVEVPGRLYPIQLLYRPVTVEDLGYKNDRFNPSPYVQIMQMIDQKYPADEKGD 451

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIF+SGISEI+++V AA+E++ K   WIVLPLHSTLS+ +QD+VF YAP+G+RKCIV+T
Sbjct: 452 LLIFLSGISEITAVVDAAKEFSTKKNNWIVLPLHSTLSITDQDKVFDYAPDGIRKCIVAT 511

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           NIAETSITIDGIRFV DSGKVKEMSYD + KM  L+EFWISKASAEQRKGRAGRTGPGVC
Sbjct: 512 NIAETSITIDGIRFVADSGKVKEMSYDPSCKMQRLKEFWISKASAEQRKGRAGRTGPGVC 571

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
           YR+YSEE+Y  L +YSTPE++RV +DS LL ++ MGL D RKFPF+E+PPA +IE+++ S
Sbjct: 572 YRIYSEEEYKTLEKYSTPELQRVPLDSSLLQMIAMGLPDARKFPFIESPPANSIENAILS 631

Query: 608 LTQH-----------GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLA 656
           L  H           GA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ VLSLA
Sbjct: 632 LKDHVGYYYRDVCVYGALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLA 691

Query: 657 AVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-------- 708
           A LS+Q+PFTNRA+RD +CET+RK+LES+HGDP+T+LNA+KEWL VK++  +        
Sbjct: 692 AALSIQTPFTNRAYRDTECETSRKKLESDHGDPITLLNAFKEWLEVKQENAQEYRSNNNS 751

Query: 709 SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLL 768
           S+KWC+RRG+EEQRFYE+TKLR+QFK +L D  L+  +P P++S++S ERA+RHGE+KLL
Sbjct: 752 SRKWCRRRGLEEQRFYEMTKLRTQFKDLLQDCNLLKSLPEPNSSMTSAERAIRHGELKLL 811

Query: 769 QAIKRKKAEEAPKRRKMLKADNAYEIE-EEEEEEEGE 804
           +++KR   +  PKRRK LK +  +EI+ E+++E  GE
Sbjct: 812 KSLKRTYKQNEPKRRKQLKVE-TFEIQFEDDDENNGE 847



 Score =  206 bits (525), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 115/267 (43%), Positives = 161/267 (60%), Gaps = 35/267 (13%)

Query: 1180 KDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPF 1239
            ++LL+ STA S+KD+T+LK+IL SGLYPQ A  DEFN  +++ E LFH K K +V+LHP 
Sbjct: 865  QNLLTASTACSYKDLTMLKLILCSGLYPQFACADEFNYCKSMSEQLFHTKAKPYVALHPM 924

Query: 1240 SVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPA 1299
            S F + P VL+I E+D++ P PG K   ++ ISSKHQ+L Y+SLLET+KP+LVN LRMPA
Sbjct: 925  SFFGNHPQVLQIEEEDVM-PIPGFK--NKSPISSKHQILAYLSLLETTKPYLVNTLRMPA 981

Query: 1300 LQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPL-----------------------QEAKS 1336
             QTL LF+  I TNS F+ +  DSW+ +  P+                       Q+ + 
Sbjct: 982  AQTLFLFAHEIDTNSTFSIIACDSWLMLEFPVPDSGQNLLMKAVKLRNKWDFLLNQQLQG 1041

Query: 1337 TADVN-------QLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGS 1389
            +  VN       ++E SLT++L+++M   T + Y+IRRLL ADLK +Y   G        
Sbjct: 1042 SGSVNDERKDFSKVEQSLTQELIEYMH--TTIPYTIRRLLPADLKMIYVGNGNNDTSIEL 1099

Query: 1390 NPFVAEFPMVVEETLGGVRVTPYLVYD 1416
            NPF  +F  +     GGV VT  + Y+
Sbjct: 1100 NPFQPDFKSIPNVIKGGVHVTDNITYN 1126



 Score =  197 bits (501), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/135 (68%), Positives = 116/135 (85%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           ++K ++  YLDFKQKEKF+ L K+R+TQ +LP+A+YK+EII  +  ERV+I+AGDTGCGK
Sbjct: 201 KFKDVILLYLDFKQKEKFAKLKKLRDTQANLPIARYKEEIIKMIKAERVIIVAGDTGCGK 260

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQIP+YL +AGF++IACTQPRRIACISL+KRVA+ETLS+  + VGYQIRFEK R ++T 
Sbjct: 261 STQIPRYLYEAGFRKIACTQPRRIACISLAKRVAFETLSENLSRVGYQIRFEKQRNQETN 320

Query: 128 IVFITEGLLLRQDSG 142
           I FITEGLLLRQ SG
Sbjct: 321 ITFITEGLLLRQVSG 335



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 95/131 (72%), Gaps = 11/131 (8%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYR+YSEE+Y  L +YSTPE++RV +DS LL ++ MGL D RKFPF+E+PPA +
Sbjct: 565 RTGPGVCYRIYSEEEYKTLEKYSTPELQRVPLDSSLLQMIAMGLPDARKFPFIESPPANS 624

Query: 869 IESSVRSLTQH-----------GAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQI 917
           IE+++ SL  H           GA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ+
Sbjct: 625 IENAILSLKDHVGYYYRDVCVYGALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQV 684

Query: 918 DTMLLLDLALN 928
           + +L L  AL+
Sbjct: 685 EPVLSLAAALS 695



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 55/63 (87%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            QV+ ++ LS+YDV+VLDEIHERHLHGDFL+G++KC+++   ++K++LMSATINIELF  Y
Sbjct: 332  QVSGESTLSAYDVIVLDEIHERHLHGDFLMGIMKCIIYQQPDLKLVLMSATINIELFSNY 391

Query: 1175 FNR 1177
            F +
Sbjct: 392  FAK 394



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 78/121 (64%), Gaps = 8/121 (6%)

Query: 137 LRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIE 196
           L QD  L+  +P P++S++S ERA+RHGE+KLL+++KR   +  PKRRK LK +  +EI+
Sbjct: 779 LLQDCNLLKSLPEPNSSMTSAERAIRHGELKLLKSLKRTYKQNEPKRRKQLKVE-TFEIQ 837

Query: 197 -EEEEEEEGERLESMDANEVEFRLKHDPKQVQ-VATDNFLSSY-DILILDEVHERHLYGD 253
            E+++E  GE    +D  ++EFR+++D  QVQ + T +   SY D+ +L  +    LY  
Sbjct: 838 FEDDDENNGE----LDIKDIEFRMRNDSSQVQNLLTASTACSYKDLTMLKLILCSGLYPQ 893

Query: 254 F 254
           F
Sbjct: 894 F 894



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 5/74 (6%)

Query: 1029 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSE 1084
            +GA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+    F + + 
Sbjct: 646  YGALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALSIQTPFTNRAY 705

Query: 1085 EEEE-EEAGERLES 1097
             + E E + ++LES
Sbjct: 706  RDTECETSRKKLES 719



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 38/50 (76%)

Query: 979  FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            +GA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+
Sbjct: 646  YGALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALS 695



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 31/33 (93%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           QV+ ++ LS+YD+++LDE+HERHL+GDFL+G++
Sbjct: 332 QVSGESTLSAYDVIVLDEIHERHLHGDFLMGIM 364


>gi|345488108|ref|XP_001604407.2| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Nasonia
           vitripennis]
          Length = 1252

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/493 (63%), Positives = 401/493 (81%), Gaps = 15/493 (3%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           +V+ +  LS YDV+VLDE+HERHLHGDFLLG++KCL+H   ++K++LMSATINIELF  Y
Sbjct: 378 QVSGEAELSQYDVVVLDEVHERHLHGDFLLGIMKCLIHQRRDLKLVLMSATINIELFSNY 437

Query: 370 F-NRIAKIIKVPGRLYPIQLEYHPIVELDR-TKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           F N   ++I+VPGRLYPIQL Y P++  D+ +KSE+ +P PYI+I+ IIDKKYP+ ERGD
Sbjct: 438 FANEDVRVIQVPGRLYPIQLIYKPVLIEDKYSKSERFNPSPYIQIMQIIDKKYPKNERGD 497

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIF+SGISEI+++V AA+EY++K   WIVLPLHSTLS+ +QD+VF YAPEG+RKCIVST
Sbjct: 498 LLIFLSGISEITAVVEAAKEYSQKENNWIVLPLHSTLSIADQDKVFGYAPEGVRKCIVST 557

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           NIAETSITIDGIRFV DSGKVKEMS+D   KM  L+EFWISKASAEQRKGRAGRTGPGVC
Sbjct: 558 NIAETSITIDGIRFVADSGKVKEMSFDPICKMQKLKEFWISKASAEQRKGRAGRTGPGVC 617

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
           YRLYS + YS   +YSTPE++RV +DS LL ++ MGL D RKFPF+E PPAE+IE+S+ S
Sbjct: 618 YRLYSGDDYSAFEKYSTPELQRVPLDSSLLQMIAMGLPDPRKFPFIEPPPAESIENSILS 677

Query: 608 LTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTN 667
           L +HGA+   E++T++G+ L+ LPVDI +GKML+ GS+FHQ++ VLSLAA LSVQSPFTN
Sbjct: 678 LKEHGALTENEKLTNIGKTLARLPVDITIGKMLIMGSLFHQVEPVLSLAAALSVQSPFTN 737

Query: 668 RAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVK---KDRVR-----SKKWCKRRGIE 719
           RA+RD DCET+RK LES+HGDP+T+LNAYKEWL +K      VR     SKKWCKRRG+E
Sbjct: 738 RAYRDLDCETSRKNLESDHGDPITLLNAYKEWLEIKHANSAEVRSGSSTSKKWCKRRGLE 797

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLI--TDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           EQRFYE+TKLR+QFK +L D  L+  +D+   ++ +SS ER +RHGE+KLL+++KR   +
Sbjct: 798 EQRFYEMTKLRTQFKDLLEDCKLLHTSDV---NSEMSSSERIIRHGELKLLRSLKRSYKQ 854

Query: 778 EAPKRRKMLKADN 790
               +RK LK D+
Sbjct: 855 NDTNKRKKLKIDD 867



 Score =  210 bits (535), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 122/272 (44%), Positives = 164/272 (60%), Gaps = 36/272 (13%)

Query: 1175 FNRIAKDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFV 1234
            F++++ +L++ STA S+KD+T+LK+IL SGLYPQ A  DEFN  +TV E LFH K K FV
Sbjct: 894  FSQVS-NLVTASTACSYKDLTMLKLILCSGLYPQFASADEFNYCKTVSEQLFHTKVKPFV 952

Query: 1235 SLHPFSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNC 1294
            +LHP S F + P VL++ E DIV   PG K   +  +S KHQLL Y+SLLET+KP+LVN 
Sbjct: 953  ALHPMSFFGTHPQVLQLEEPDIVS-IPGFK--SKTPVSPKHQLLTYLSLLETTKPYLVNT 1009

Query: 1295 LRMPALQTLLLFSSAIHTNSDFTRLVFDSWIEVFVP------------------------ 1330
            LR+PA QTLLLF+  I TNS FT L  DSWI +  P                        
Sbjct: 1010 LRIPAAQTLLLFAQEIDTNSTFTTLACDSWIALDFPTPDSGALLLLQAAKLRQKWDHLLN 1069

Query: 1331 --LQEAKS----TADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAES 1384
              LQ++ S      ++ +LEH L++ LV FM   T + Y+++RLLAADLK MY      S
Sbjct: 1070 IQLQDSSSLENKLENIEELEHELSKGLVDFMH--TSVPYTVKRLLAADLKRMYVGREENS 1127

Query: 1385 GVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
             +   NPF +++     E  GGVRVT  + ++
Sbjct: 1128 TILIPNPFSSDYECQPHERKGGVRVTKQITFN 1159



 Score =  201 bits (511), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/142 (68%), Positives = 115/142 (80%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           ++ A  +++K ++  Y+DFKQKEKF  L K+R  Q +LPVAQY+ EII+ V  ERVVIIA
Sbjct: 240 LTDARLKKFKDIVTIYVDFKQKEKFQKLKKLRTEQANLPVAQYRDEIIEAVKTERVVIIA 299

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL  AGF +IACTQPRRIACISL+KRVAYETL++  N VGYQIRFEK
Sbjct: 300 GDTGCGKSTQVPQYLYTAGFGQIACTQPRRIACISLAKRVAYETLTENQNEVGYQIRFEK 359

Query: 121 HRREKTKIVFITEGLLLRQDSG 142
            R + TKI FITEGLLLRQ SG
Sbjct: 360 QRNKDTKITFITEGLLLRQVSG 381



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/120 (57%), Positives = 94/120 (78%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLYS + YS   +YSTPE++RV +DS LL ++ MGL D RKFPF+E PPAE+
Sbjct: 611 RTGPGVCYRLYSGDDYSAFEKYSTPELQRVPLDSSLLQMIAMGLPDPRKFPFIEPPPAES 670

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE+S+ SL +HGA+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+
Sbjct: 671 IENSILSLKEHGALTENEKLTNIGKTLARLPVDITIGKMLIMGSLFHQVEPVLSLAAALS 730



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 72/111 (64%), Gaps = 22/111 (19%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            QV+ +  LS YDV+VLDE+HERHLHGDFLLG++KCL+H   ++K++LMSATINIELF  Y
Sbjct: 378  QVSGEAELSQYDVVVLDEVHERHLHGDFLLGIMKCLIHQRRDLKLVLMSATINIELFSNY 437

Query: 1175 FNRIAKDLLSGSTARSHKDVTILKVILASGLYP------QVAIGDEFNTSE 1219
            F              +++DV +++V     LYP       V I D+++ SE
Sbjct: 438  F--------------ANEDVRVIQV--PGRLYPIQLIYKPVLIEDKYSKSE 472



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 38/49 (77%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+   E++T++G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+
Sbjct: 682  GALTENEKLTNIGKTLARLPVDITIGKMLIMGSLFHQVEPVLSLAAALS 730



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 38/49 (77%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+   E++T++G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+
Sbjct: 682  GALTENEKLTNIGKTLARLPVDITIGKMLIMGSLFHQVEPVLSLAAALS 730



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 31/38 (81%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
           QV+ +  LS YD+++LDEVHERHL+GDFLLG++   +H
Sbjct: 378 QVSGEAELSQYDVVVLDEVHERHLHGDFLLGIMKCLIH 415



 Score = 42.4 bits (98), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 7/106 (6%)

Query: 151 DASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESM 210
           ++ +SS ER +RHGE+KLL+++KR   +    +RK LK D     ++    E+ +  E +
Sbjct: 827 NSEMSSSERIIRHGELKLLRSLKRSYKQNDTNKRKKLKID-----DDNIRIEDDKEDEEI 881

Query: 211 DANEVEFRLKHDPKQVQ--VATDNFLSSYDILILDEVHERHLYGDF 254
           D  +VEFR+++D  QV   V      S  D+ +L  +    LY  F
Sbjct: 882 DIKDVEFRMRNDFSQVSNLVTASTACSYKDLTMLKLILCSGLYPQF 927


>gi|380016694|ref|XP_003692310.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DHX34-like [Apis florea]
          Length = 1117

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/496 (62%), Positives = 407/496 (82%), Gaps = 12/496 (2%)

Query: 320 YDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR-IAKIIK 378
           YDV+VLDE+HERHLHGDFLLG++KC+++   ++K+ILMSATINIELF  YF +   KII+
Sbjct: 252 YDVIVLDEVHERHLHGDFLLGIMKCIINQRFDLKLILMSATINIELFSDYFAKENVKIIQ 311

Query: 379 VPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE 437
           VPGRLYPIQL Y PI +E  R K+++ +P PYI+I+ +ID+KY   E+GD+LIF+SG+SE
Sbjct: 312 VPGRLYPIQLLYKPITIEDIRYKNDRFNPSPYIQIMQMIDQKYSADEKGDLLIFLSGMSE 371

Query: 438 ISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497
           IS++V AA+EY+ K   WI+LPLHSTL++ EQD+VF YAPEG+RKCIVSTNIAETSITID
Sbjct: 372 ISTVVDAAKEYSXKKNNWIILPLHSTLAISEQDKVFDYAPEGIRKCIVSTNIAETSITID 431

Query: 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557
           GIRFV DSGKVKEMSY+ + KM  L+EFWISKASAEQRKGRAGRTGPGVCYRLYSE +Y 
Sbjct: 432 GIRFVADSGKVKEMSYNPSCKMQQLKEFWISKASAEQRKGRAGRTGPGVCYRLYSETEYL 491

Query: 558 LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSK 617
            L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E P  E+IE+S+ SL +HGA+   
Sbjct: 492 NLEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPSPESIENSIISLKEHGALTDN 551

Query: 618 ERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCET 677
           E++T +GR L+ LPVDI +GKML+ GS+FHQ++ VLSLAA LS+Q+PFTN+A+RD +CE 
Sbjct: 552 EKITCIGRTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALSIQTPFTNKAYRDSECEI 611

Query: 678 ARKELESNHGDPLTVLNAYKEWLGVKKD--------RVRSKKWCKRRGIEEQRFYEVTKL 729
           +RK+LES+HGDP+T+LNA++EWL +K+         R  S+KWCKRRG+EEQRFYE+TKL
Sbjct: 612 SRKKLESDHGDPITLLNAFREWLEIKQQNSQESRSTRNNSRKWCKRRGLEEQRFYEMTKL 671

Query: 730 RSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKAD 789
           R+QFK++L D GL+ +   P++S+SS ERALRHGE+KLL+++KR   +  P++RK LK +
Sbjct: 672 RAQFKELLQDCGLLKNFSEPNSSMSSAERALRHGELKLLKSLKRIYKQNEPRKRKQLKLE 731

Query: 790 NAYEIE-EEEEEEEGE 804
            +++I+ E+ + E+GE
Sbjct: 732 -SFDIQLEDNDHEDGE 746



 Score =  200 bits (508), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 108/267 (40%), Positives = 156/267 (58%), Gaps = 34/267 (12%)

Query: 1179 AKDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHP 1238
             ++LL+ STA ++KD+T+LK+IL SGLYPQ A+ DEFN  +T  E LFH K K +++LHP
Sbjct: 763  VQNLLTASTACNYKDLTMLKLILCSGLYPQFAVADEFNYCKTTNEQLFHTKAKPYIALHP 822

Query: 1239 FSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMP 1298
             S F   P VL++ E D+V   PG K   +  +S KH +L Y+SLLET+KP+LVN LRMP
Sbjct: 823  ISFFGHHPQVLQLEEVDVVS-IPGFK--NKTPVSPKHTILTYLSLLETTKPYLVNTLRMP 879

Query: 1299 ALQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAKST--------------------- 1337
            A QTLLLF+  I TNS F+ +V DSW+E+  P+ +   T                     
Sbjct: 880  AAQTLLLFAREIDTNSTFSIIVCDSWLELKFPIPDTGQTLLMKATKLRHKWDFLLNQRLQ 939

Query: 1338 --------ADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGS 1389
                     D +Q E  L + L+++M   T + Y+++RLL ADLK +Y   G  + +   
Sbjct: 940  DSNIGNDIQDFSQFEDILIQKLIEYMH--TTVPYTLKRLLPADLKIIYVGNGKNNILVDP 997

Query: 1390 NPFVAEFPMVVEETLGGVRVTPYLVYD 1416
            NPF ++F +      GG+RV+  + Y+
Sbjct: 998  NPFQSDFIITPNSVKGGIRVSNIITYN 1024



 Score =  196 bits (499), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 93/127 (73%), Positives = 108/127 (85%)

Query: 16  YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL 75
           YLDFKQKEKF  L K+R++Q +LPV QYK EII ++ +ERVVIIAGDTGCGKSTQ+PQYL
Sbjct: 119 YLDFKQKEKFIKLKKLRDSQANLPVYQYKHEIIQSIKQERVVIIAGDTGCGKSTQVPQYL 178

Query: 76  VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
             AGFQ+IACTQPRRIACISL+KRVA+ETL++  N VGYQIRFEK + + TKI  ITEGL
Sbjct: 179 YSAGFQKIACTQPRRIACISLAKRVAFETLTENYNDVGYQIRFEKQKNQNTKITXITEGL 238

Query: 136 LLRQDSG 142
           LLRQ SG
Sbjct: 239 LLRQLSG 245



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/120 (58%), Positives = 94/120 (78%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLYSE +Y  L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E P  E+
Sbjct: 475 RTGPGVCYRLYSETEYLNLEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPSPES 534

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE+S+ SL +HGA+   E++T +GR L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+
Sbjct: 535 IENSIISLKEHGALTDNEKITCIGRTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALS 594



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 52/63 (82%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q++ +  L  YDV+VLDE+HERHLHGDFLLG++KC+++   ++K+ILMSATINIELF  Y
Sbjct: 242  QLSGEFELLFYDVIVLDEVHERHLHGDFLLGIMKCIINQRFDLKLILMSATINIELFSDY 301

Query: 1175 FNR 1177
            F +
Sbjct: 302  FAK 304



 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 66/92 (71%), Gaps = 6/92 (6%)

Query: 137 LRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIE 196
           L QD GL+ +   P++S+SS ERALRHGE+KLL+++KR   +  P++RK LK + +++I+
Sbjct: 678 LLQDCGLLKNFSEPNSSMSSAERALRHGELKLLKSLKRIYKQNEPRKRKQLKLE-SFDIQ 736

Query: 197 -EEEEEEEGERLESMDANEVEFRLKHDPKQVQ 227
            E+ + E+GE    +D  ++EFR+K+D  QVQ
Sbjct: 737 LEDNDHEDGE----IDIKDIEFRMKNDSNQVQ 764



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+   E++T +GR L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+    F + +  
Sbjct: 546  GALTDNEKITCIGRTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALSIQTPFTNKAYR 605

Query: 1086 EEEEE-AGERLES 1097
            + E E + ++LES
Sbjct: 606  DSECEISRKKLES 618



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 37/49 (75%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+   E++T +GR L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+
Sbjct: 546  GALTDNEKITCIGRTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALS 594



 Score = 47.0 bits (110), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 17/23 (73%), Positives = 23/23 (100%)

Query: 237 YDILILDEVHERHLYGDFLLGVI 259
           YD+++LDEVHERHL+GDFLLG++
Sbjct: 252 YDVIVLDEVHERHLHGDFLLGIM 274


>gi|328793704|ref|XP_397034.4| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Apis
           mellifera]
          Length = 1138

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/496 (62%), Positives = 408/496 (82%), Gaps = 12/496 (2%)

Query: 320 YDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR-IAKIIK 378
           YDV+VLDE+HERHLHGDFLLG++KC+++   ++K+ILMSATINIELF  YF +   KII+
Sbjct: 274 YDVIVLDEVHERHLHGDFLLGIMKCIINQRYDLKLILMSATINIELFSDYFAKENVKIIQ 333

Query: 379 VPGRLYPIQLEYHPIVELD-RTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE 437
           VPGRLYPIQL Y PI+  D R K+++ +P PYI+I+ +ID+KY   E+GD+LIF+SG+SE
Sbjct: 334 VPGRLYPIQLLYKPIIIEDIRYKNDRFNPSPYIQIMQMIDQKYSADEKGDLLIFLSGMSE 393

Query: 438 ISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497
           IS++V AA+EY++K   WI+LPLHSTL++ EQD+VF YAPEG+RKCIVSTNIAETSITID
Sbjct: 394 ISTVVDAAKEYSQKKNNWIILPLHSTLAISEQDKVFDYAPEGIRKCIVSTNIAETSITID 453

Query: 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557
           GIRFV DSGKVKEMSY+ + KM  L+EFWISKASAEQRKGRAGRTGPGVCYRLYSE +Y 
Sbjct: 454 GIRFVADSGKVKEMSYNPSCKMQQLKEFWISKASAEQRKGRAGRTGPGVCYRLYSETEYL 513

Query: 558 LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSK 617
            L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E P  E+IE+S+ SL +HGA+   
Sbjct: 514 NLEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPSPESIENSIISLKEHGALTDN 573

Query: 618 ERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCET 677
           E++T +GR L+ LPVDI +GKML+ GS+FHQI+ VLSLAA LS+Q+PFTN+A+RD +CET
Sbjct: 574 EKITCIGRTLARLPVDITIGKMLIMGSIFHQIEPVLSLAAALSIQTPFTNKAYRDSECET 633

Query: 678 ARKELESNHGDPLTVLNAYKEWLGVKKD--------RVRSKKWCKRRGIEEQRFYEVTKL 729
           +RK+LES+HGDP+T+LNA++EWL +K+         R  SKKWCKRRG+EEQRFYE+TKL
Sbjct: 634 SRKKLESDHGDPITLLNAFREWLEIKQQSSQESRSTRNNSKKWCKRRGLEEQRFYEMTKL 693

Query: 730 RSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKAD 789
           R+QFK++L D GL+ +    ++S+SS ERA+RHGE+KLL+++KR   +  P++RK LK +
Sbjct: 694 RAQFKELLQDCGLLKNFSESNSSMSSAERAIRHGELKLLKSLKRIYKQNEPRKRKQLKLE 753

Query: 790 NAYEIE-EEEEEEEGE 804
            +++I+ E+ + E+GE
Sbjct: 754 -SFDIQLEDNDHEDGE 768



 Score =  201 bits (511), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/127 (74%), Positives = 108/127 (85%)

Query: 16  YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL 75
           YLDFKQKEKF  L K+R +Q +LPV QYK EII T+ +ERVVIIAGDTGCGKSTQ+PQYL
Sbjct: 141 YLDFKQKEKFIKLKKLRNSQANLPVYQYKHEIIQTIKQERVVIIAGDTGCGKSTQVPQYL 200

Query: 76  VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
             AGFQ+IACTQPRRIACISL+KRVA+ETL++  N VGYQIRFEK + + TKI FITEGL
Sbjct: 201 YSAGFQKIACTQPRRIACISLAKRVAFETLTENYNDVGYQIRFEKQKNQNTKITFITEGL 260

Query: 136 LLRQDSG 142
           LLRQ SG
Sbjct: 261 LLRQLSG 267



 Score =  200 bits (509), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 108/267 (40%), Positives = 158/267 (59%), Gaps = 34/267 (12%)

Query: 1179 AKDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHP 1238
             ++LL+ STA ++KD+T+LK+IL SGLYPQ A+ DEFN  +T+ E LFH K K +++LHP
Sbjct: 785  VQNLLTASTACNYKDLTMLKLILCSGLYPQFAVADEFNYCKTMNEQLFHTKAKPYIALHP 844

Query: 1239 FSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMP 1298
             S F   P VL++ E D+V   PG K   +  +S KH +L Y+SLLET+KP+LVN LRMP
Sbjct: 845  ISFFGHHPQVLQLEEVDVVS-IPGFK--NKTPVSPKHTILTYLSLLETTKPYLVNTLRMP 901

Query: 1299 ALQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAKST--------------------- 1337
            A QTLLLF+  I TNS F+ +V DSW+E+  P+ +   T                     
Sbjct: 902  AAQTLLLFAREIDTNSTFSIIVCDSWLELKFPIPDTGQTLLMKATKLRHKWDFLLNQRLQ 961

Query: 1338 --------ADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGS 1389
                     D+++ E  L + L+++M   T + Y+++RLL ADLK +Y   G  + +   
Sbjct: 962  DSNINNDIQDLSEFEDILIQKLIEYMH--TTVPYTLKRLLPADLKIIYVGNGKNNILVDP 1019

Query: 1390 NPFVAEFPMVVEETLGGVRVTPYLVYD 1416
            NPF ++F +      GGVRV+  + Y+
Sbjct: 1020 NPFQSDFVITPNSVKGGVRVSNIITYN 1046



 Score =  155 bits (393), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 94/120 (78%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLYSE +Y  L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E P  E+
Sbjct: 497 RTGPGVCYRLYSETEYLNLEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPSPES 556

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE+S+ SL +HGA+   E++T +GR L+ LPVDI +GKML+ GS+FHQI+ +L L  AL+
Sbjct: 557 IENSIISLKEHGALTDNEKITCIGRTLARLPVDITIGKMLIMGSIFHQIEPVLSLAAALS 616



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 52/63 (82%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q++ +  L  YDV+VLDE+HERHLHGDFLLG++KC+++   ++K+ILMSATINIELF  Y
Sbjct: 264  QLSGEFDLLFYDVIVLDEVHERHLHGDFLLGIMKCIINQRYDLKLILMSATINIELFSDY 323

Query: 1175 FNR 1177
            F +
Sbjct: 324  FAK 326



 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 65/92 (70%), Gaps = 6/92 (6%)

Query: 137 LRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIE 196
           L QD GL+ +    ++S+SS ERA+RHGE+KLL+++KR   +  P++RK LK + +++I+
Sbjct: 700 LLQDCGLLKNFSESNSSMSSAERAIRHGELKLLKSLKRIYKQNEPRKRKQLKLE-SFDIQ 758

Query: 197 -EEEEEEEGERLESMDANEVEFRLKHDPKQVQ 227
            E+ + E+GE    +D  ++EFR+K+D  QVQ
Sbjct: 759 LEDNDHEDGE----IDIKDIEFRMKNDSNQVQ 786



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+   E++T +GR L+ LPVDI +GKML+ GS+FHQI+ +L L  AL+    F + +  
Sbjct: 568  GALTDNEKITCIGRTLARLPVDITIGKMLIMGSIFHQIEPVLSLAAALSIQTPFTNKAYR 627

Query: 1086 EEE-EEAGERLES 1097
            + E E + ++LES
Sbjct: 628  DSECETSRKKLES 640



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 37/49 (75%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+   E++T +GR L+ LPVDI +GKML+ GS+FHQI+ +L L  AL+
Sbjct: 568  GALTDNEKITCIGRTLARLPVDITIGKMLIMGSIFHQIEPVLSLAAALS 616



 Score = 47.0 bits (110), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 17/23 (73%), Positives = 23/23 (100%)

Query: 237 YDILILDEVHERHLYGDFLLGVI 259
           YD+++LDEVHERHL+GDFLLG++
Sbjct: 274 YDVIVLDEVHERHLHGDFLLGIM 296


>gi|157117593|ref|XP_001658842.1| ATP-dependent RNA helicase [Aedes aegypti]
 gi|108875986|gb|EAT40211.1| AAEL008035-PA [Aedes aegypti]
          Length = 1246

 Score =  627 bits (1618), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 295/511 (57%), Positives = 399/511 (78%), Gaps = 22/511 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           +++A+  LS Y V++LDE+HERHLHGDFLLG+ KCL+ +  ++K++LMSATINI+LF  Y
Sbjct: 353 QLSAEENLSQYSVIILDEVHERHLHGDFLLGITKCLMRAKPDIKLVLMSATINIKLFGDY 412

Query: 370 F-NRIAKIIKVPGRLYPIQLEYHPIVE---------LDRTKSEKLDPGPYIRILSIIDKK 419
           F    A+II+VPGRL+PI+L Y P ++           +  S+++ P PYI+IL +ID+K
Sbjct: 413 FAEEKAQIIEVPGRLFPIKLHYMPQIQDVPTTSSGKSKQKTSDRISPEPYIQILQLIDQK 472

Query: 420 YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG 479
           YP TE+GDVLIF+SG++EI+SIV AA+EY EK++ WI+LPLHSTLS+ EQD+VF Y P+G
Sbjct: 473 YPPTEKGDVLIFLSGLNEITSIVDAAKEYAEKNKNWIILPLHSTLSIAEQDKVFDYPPDG 532

Query: 480 LRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRA 539
           +RKCI+STNIAETS+TIDGIRFV+DSGKVKEMSYD T KM  L+EFWISKASAEQRKGRA
Sbjct: 533 IRKCIISTNIAETSVTIDGIRFVIDSGKVKEMSYDATTKMQRLKEFWISKASAEQRKGRA 592

Query: 540 GRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 599
           GRTGPG+CYRLYSE+Q+     Y+T EI +V ++SLLL ++ MGL + R FPF+E+PPAE
Sbjct: 593 GRTGPGICYRLYSEKQFYDFESYTTAEILKVPLESLLLQMISMGLPNARMFPFIESPPAE 652

Query: 600 NIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVL 659
           NIE+++ +L  H A+   E++T LG+ L+ +PVDI +GKML+ G +F Q+  VL+LAA L
Sbjct: 653 NIENAIMNLKHHEALTVDEKLTPLGKALARIPVDIGIGKMLLMGCVFQQLQPVLTLAATL 712

Query: 660 SVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR---------SK 710
           SVQSPFTNRA+R+P+CE ARK  ES+HGDP+T+LNAYKEWL +K++R           SK
Sbjct: 713 SVQSPFTNRAYREPECERARKSFESDHGDPITLLNAYKEWLELKQNRFEYRRDEHRESSK 772

Query: 711 KWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQA 770
            WC+RRG+EEQRFYE+TKLR QF+ +L D GL+ +      S++S ERA+RHGE+K L+ 
Sbjct: 773 SWCRRRGLEEQRFYEITKLRRQFQDLLQDCGLMEN--ANSDSMTSAERAIRHGELKQLKE 830

Query: 771 IKRKKAEEAPKRRKMLKADNAYEIEEEEEEE 801
           +++    EAP++RK+LK+D  + +EE EE++
Sbjct: 831 LRKSHRMEAPRKRKLLKSD-PWGLEEGEEDD 860



 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/282 (39%), Positives = 161/282 (57%), Gaps = 48/282 (17%)

Query: 1180 KDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPF 1239
            +DL+SG+TA S++D+  LK+IL SGLYPQVAI D++N  ++  E  FH + K +VSLHP 
Sbjct: 880  QDLVSGATACSYRDLMTLKLILVSGLYPQVAIADDYNYCKSPTEQFFHTQTKPYVSLHPM 939

Query: 1240 SVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPA 1299
              F +  +VL++ EDDI++   GL    R  +SSKHQ+L Y++LLET+K +L+N LRMPA
Sbjct: 940  GYFGNNTEVLQLMEDDIIE-KSGL-YKSRQPLSSKHQILCYLTLLETNKTYLMNTLRMPA 997

Query: 1300 LQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAKS----------------------- 1336
             QTLLLF+  I TN  F+R++ DSW+ +  P  E+                         
Sbjct: 998  AQTLLLFAHTIDTNLTFSRIICDSWLCLDFPSPESGQTLLYKASNLRRLWNKMLAEKLKV 1057

Query: 1337 ---TAD-----------VNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGA 1382
               TAD           + Q+ + L  DL QFM+  T + Y+++R+L AD+KTMY+    
Sbjct: 1058 LTHTADEDLSRADREKSIEQMNYELWHDLAQFMN--TEVCYTLKRMLPADVKTMYKGPLY 1115

Query: 1383 ESGVP-GSNPFVAEFPMVVEETLGGVRVTPYLVY------DW 1417
            +  +    NPF  EF  +  +T GGV +T  ++Y      DW
Sbjct: 1116 DRTLEVDPNPFAEEFKPIANDTKGGVHITENIIYGCINETDW 1157



 Score =  180 bits (457), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 82/127 (64%), Positives = 104/127 (81%)

Query: 16  YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL 75
           YLDF+QKE+F+ L K+R+ Q +LPVA ++ EI+  V  E++VI+AGDTGCGKSTQ+PQYL
Sbjct: 230 YLDFRQKERFNKLRKLRKAQANLPVASHRDEIVAAVKNEQIVILAGDTGCGKSTQVPQYL 289

Query: 76  VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
             AG+++IACTQPRRIACISLSKRVA+E L +Y   VGYQIRFE+ +  +T I+FITEGL
Sbjct: 290 YHAGYEKIACTQPRRIACISLSKRVAHEMLCEYGTQVGYQIRFERSKSTQTNILFITEGL 349

Query: 136 LLRQDSG 142
           LLRQ S 
Sbjct: 350 LLRQLSA 356



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 87/120 (72%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPG+CYRLYSE+Q+     Y+T EI +V ++SLLL ++ MGL + R FPF+E+PPAEN
Sbjct: 594 RTGPGICYRLYSEKQFYDFESYTTAEILKVPLESLLLQMISMGLPNARMFPFIESPPAEN 653

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE+++ +L  H A+   E++T LG+ L+ +PVDI +GKML+ G +F Q+  +L L   L+
Sbjct: 654 IENAIMNLKHHEALTVDEKLTPLGKALARIPVDIGIGKMLLMGCVFQQLQPVLTLAATLS 713



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 51/61 (83%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q++A+  LS Y V++LDE+HERHLHGDFLLG+ KCL+ +  ++K++LMSATINI+LF  Y
Sbjct: 353  QLSAEENLSQYSVIILDEVHERHLHGDFLLGITKCLMRAKPDIKLVLMSATINIKLFGDY 412

Query: 1175 F 1175
            F
Sbjct: 413  F 413



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 66/108 (61%), Gaps = 10/108 (9%)

Query: 137 LRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIE 196
           L QD GL+ +      S++S ERA+RHGE+K L+ +++    EAP++RK+LK+D  + +E
Sbjct: 798 LLQDCGLMEN--ANSDSMTSAERAIRHGELKQLKELRKSHRMEAPRKRKLLKSD-PWGLE 854

Query: 197 EEEEEEEGERLESMDANEVEFRLKHDPKQVQ--VATDNFLSSYDILIL 242
           E EE++       +D  +VEFRL HD  ++Q  V+     S  D++ L
Sbjct: 855 EGEEDD-----GKVDIRDVEFRLSHDSSKIQDLVSGATACSYRDLMTL 897



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 27/32 (84%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGV 258
           Q++ +  LS Y ++ILDEVHERHL+GDFLLG+
Sbjct: 353 QLSAEENLSQYSVIILDEVHERHLHGDFLLGI 384



 Score = 45.1 bits (105), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEEE 1086
            A+   E++T LG+ L+ +PVDI +GKML+ G +F Q+  +L L   L+    F + +  E
Sbjct: 666  ALTVDEKLTPLGKALARIPVDIGIGKMLLMGCVFQQLQPVLTLAATLSVQSPFTNRAYRE 725

Query: 1087 EE-EEAGERLES 1097
             E E A +  ES
Sbjct: 726  PECERARKSFES 737



 Score = 43.9 bits (102), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            A+   E++T LG+ L+ +PVDI +GKML+ G +F Q+  +L L   L+
Sbjct: 666  ALTVDEKLTPLGKALARIPVDIGIGKMLLMGCVFQQLQPVLTLAATLS 713


>gi|158302196|ref|XP_321806.4| AGAP001338-PA [Anopheles gambiae str. PEST]
 gi|157012834|gb|EAA01125.4| AGAP001338-PA [Anopheles gambiae str. PEST]
          Length = 1184

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 299/525 (56%), Positives = 404/525 (76%), Gaps = 27/525 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++A+++ L  Y V++LDE+HERHLHGDFLLG+ KCL+ +  ++K++LMSATINI+LF  Y
Sbjct: 257 QLASEDNLQQYSVIILDEVHERHLHGDFLLGIAKCLIRARPDLKLVLMSATINIKLFADY 316

Query: 370 FNRI-AKIIKVPGRLYPIQLEYHPIVE-----------LDRTKSEKLDPGPYIRILSIID 417
           F+   A+II+VPGRL+PI+L Y P ++             RT+S++L P PYI+IL +ID
Sbjct: 317 FSEEEARIIEVPGRLFPIKLHYMPQLQDVPMVSGGAGGSKRTQSDRLSPEPYIQILQLID 376

Query: 418 KKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAP 477
           +KYP TE+GDVLIF+SG++EI++IV AA+EYNEK++ WI+LPLHSTLS+ EQD+VF YAP
Sbjct: 377 QKYPPTEKGDVLIFLSGLNEITAIVDAAREYNEKNKNWIILPLHSTLSIAEQDKVFDYAP 436

Query: 478 EGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKG 537
           +G+RKCIVSTNIAETS+TIDGIRFVVDSGKVKEMSYD T KM  L+EFWISKASAEQRKG
Sbjct: 437 DGMRKCIVSTNIAETSVTIDGIRFVVDSGKVKEMSYDPTTKMQRLKEFWISKASAEQRKG 496

Query: 538 RAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 597
           RAGRTGPG+CYRLY+E+Q+     YST EI +V ++SLLL ++ MGL + R FPF+E PP
Sbjct: 497 RAGRTGPGICYRLYAEKQFYDFDAYSTAEILKVPLESLLLQMISMGLPNARLFPFVEPPP 556

Query: 598 AENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAA 657
            +N+E+++ +L +  A+   E++T LG+ L+ +PVDI +GKML+ G +F Q+  VL+LAA
Sbjct: 557 MDNVENAIVNLKEAEALTEDEKLTPLGKALAKIPVDIGIGKMLLMGCVFQQLQPVLTLAA 616

Query: 658 VLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRV---------- 707
            LSVQSPFTNRA+RDP+CE ARK LES+HGDP+T+LNAYKEWL +K+ R           
Sbjct: 617 ALSVQSPFTNRAYRDPECERARKSLESDHGDPITLLNAYKEWLEIKQHRTDYGRRDDGDR 676

Query: 708 ---RSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGE 764
               SK WC+RRG+EEQRFYE+TKLR+QF+ +L D GL+      +  LSS ERA+R+GE
Sbjct: 677 RSESSKVWCRRRGLEEQRFYEITKLRNQFQDLLQDCGLMET--QNNDHLSSAERAIRNGE 734

Query: 765 IKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESR 809
           ++ L+ +++    EAP++RK+LK+D     E+ EEE +  R++ R
Sbjct: 735 LRQLKELRKAHRMEAPRKRKLLKSDPWGLGEDGEEEADDGRVDIR 779



 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/124 (66%), Positives = 107/124 (86%)

Query: 16  YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL 75
           YLDF+Q+EKF+ L K+R+ Q +LPVA++++EI++ V  ERVV++AGDTGCGKSTQ+PQYL
Sbjct: 134 YLDFRQREKFNKLRKLRQAQANLPVAKHREEIVEAVRNERVVVLAGDTGCGKSTQVPQYL 193

Query: 76  VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
            +AG++ IACTQPRRIACISLSKRVA+E L++Y   VGYQIRFE+ +   TKI+FITEGL
Sbjct: 194 YRAGYEGIACTQPRRIACISLSKRVAHELLAEYRTEVGYQIRFERSKNTNTKILFITEGL 253

Query: 136 LLRQ 139
           LLRQ
Sbjct: 254 LLRQ 257



 Score =  184 bits (468), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/287 (35%), Positives = 156/287 (54%), Gaps = 55/287 (19%)

Query: 1182 LLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSV 1241
            L+SG+TA S++D+  LK+IL SGLYPQVAI DEFN  +++ E  FH + K +VSLHP S 
Sbjct: 795  LVSGATACSYRDLMTLKLILVSGLYPQVAIADEFNYCKSLSEQFFHTRAKPYVSLHPMSF 854

Query: 1242 FTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQ 1301
            F +   +L++++ +I + PP  K   R  +SS+HQ++ Y++LLET+K +L N LRMPA Q
Sbjct: 855  FGNNAQILQLTDSEIEEKPPTYK--SRQPLSSRHQIVCYLTLLETNKSYLTNTLRMPAAQ 912

Query: 1302 TLLLFSSAIHTNSDFTRLVFDSWIEVFVP------------------------------- 1330
            TLLLF+  I TN+  +R+V D+W+ +  P                               
Sbjct: 913  TLLLFAHTIETNASCSRIVCDAWLCLDFPAPESGQALLLKATKLRRLWNRLLAEKLKALT 972

Query: 1331 ------LQEAKSTADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYR------ 1378
                  L +A+    ++Q+   L   L Q+M+  T + Y++++LL ADLKT+Y+      
Sbjct: 973  ITADGELTKAERNVSIDQMNRELWSSLAQYMN--TEVCYTMKKLLPADLKTLYKGPSLEE 1030

Query: 1379 --RTGAESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVY------DW 1417
                     +P  NPF  +F  +  ET GGV +T  + Y      DW
Sbjct: 1031 DEEDEERMELPDPNPFAEDFQPLRNETKGGVYLTENITYGCVVETDW 1077



 Score =  124 bits (311), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 86/120 (71%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPG+CYRLY+E+Q+     YST EI +V ++SLLL ++ MGL + R FPF+E PP +N
Sbjct: 500 RTGPGICYRLYAEKQFYDFDAYSTAEILKVPLESLLLQMISMGLPNARLFPFVEPPPMDN 559

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++ +L +  A+   E++T LG+ L+ +PVDI +GKML+ G +F Q+  +L L  AL+
Sbjct: 560 VENAIVNLKEAEALTEDEKLTPLGKALAKIPVDIGIGKMLLMGCVFQQLQPVLTLAAALS 619



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 52/62 (83%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+A+++ L  Y V++LDE+HERHLHGDFLLG+ KCL+ +  ++K++LMSATINI+LF  Y
Sbjct: 257  QLASEDNLQQYSVIILDEVHERHLHGDFLLGIAKCLIRARPDLKLVLMSATINIKLFADY 316

Query: 1175 FN 1176
            F+
Sbjct: 317  FS 318



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 7/117 (5%)

Query: 137 LRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIE 196
           L QD GL+      +  LSS ERA+R+GE++ L+ +++    EAP++RK+LK+D     E
Sbjct: 708 LLQDCGLMET--QNNDHLSSAERAIRNGELRQLKELRKAHRMEAPRKRKLLKSDPWGLGE 765

Query: 197 EEEEEEEGERLESMDANEVEFRLKHDPKQVQ--VATDNFLSSYDILILDEVHERHLY 251
           + EEE +  R+   D  +VEFRL HD  ++Q  V+     S  D++ L  +    LY
Sbjct: 766 DGEEEADDGRV---DIRDVEFRLSHDASKLQHLVSGATACSYRDLMTLKLILVSGLY 819



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 28/32 (87%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGV 258
           Q+A+++ L  Y ++ILDEVHERHL+GDFLLG+
Sbjct: 257 QLASEDNLQQYSVIILDEVHERHLHGDFLLGI 288



 Score = 47.8 bits (112), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEEE 1086
            A+   E++T LG+ L+ +PVDI +GKML+ G +F Q+  +L L  AL+    F + +  +
Sbjct: 572  ALTEDEKLTPLGKALAKIPVDIGIGKMLLMGCVFQQLQPVLTLAAALSVQSPFTNRAYRD 631

Query: 1087 EE-EEAGERLES 1097
             E E A + LES
Sbjct: 632  PECERARKSLES 643



 Score = 46.6 bits (109), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 33/48 (68%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            A+   E++T LG+ L+ +PVDI +GKML+ G +F Q+  +L L  AL+
Sbjct: 572  ALTEDEKLTPLGKALAKIPVDIGIGKMLLMGCVFQQLQPVLTLAAALS 619


>gi|170065996|ref|XP_001868088.1| ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167862694|gb|EDS26077.1| ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 1213

 Score =  616 bits (1588), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 290/513 (56%), Positives = 399/513 (77%), Gaps = 24/513 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           +++ +  LS Y V++LDE+HERHLHGDFLLG+ KCL+ +  ++K++LMSATINI+LF  Y
Sbjct: 412 QLSTEEKLSQYSVILLDEVHERHLHGDFLLGITKCLIRARPDLKLVLMSATINIKLFGDY 471

Query: 370 F-NRIAKIIKVPGRLYPIQLEYHPIVE----------LDRTKSEKLDPGPYIRILSIIDK 418
           F +  A+II+VPGRL+PI+L Y P ++               S+++ P PY++I+ +ID+
Sbjct: 472 FADEKAQIIEVPGRLFPIKLHYMPQIQDVSLLSAGTSKKSKTSDRISPDPYLQIMQLIDQ 531

Query: 419 KYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
           KYP TE+GDVLIF+SG++EI++IV AA+EY EK++ WI+LPLHSTLS+ EQD+VF YAPE
Sbjct: 532 KYPPTEKGDVLIFLSGLNEITTIVDAAKEYAEKNKNWIILPLHSTLSIAEQDKVFDYAPE 591

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
           G RKCI+STNIAETS+TIDGIRFV+DSGKVKEMSYD T KM  L+EFWISKAS+EQRKGR
Sbjct: 592 GSRKCIISTNIAETSVTIDGIRFVIDSGKVKEMSYDPTTKMQRLKEFWISKASSEQRKGR 651

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
           AGRTGPG+CYRLYSE+Q+     Y+T EI +V ++SLLL ++ MGL + R FPF+E PPA
Sbjct: 652 AGRTGPGICYRLYSEKQFQDFEAYTTAEILKVPLESLLLQMISMGLPNSRMFPFVEPPPA 711

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
           +NIE+++ +L  H A+ + E++T LG+ L+ +PVDI +GKML+ G +F Q+  VL+LAA 
Sbjct: 712 DNIENAIMNLKHHEALTNDEKLTPLGKALARIPVDISIGKMLLMGCVFQQLQPVLTLAAA 771

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRV----------R 708
           LSVQSPFTNRA+R+P+CE ARK LES+HGDP+T+LNAYKEWL +K+ RV           
Sbjct: 772 LSVQSPFTNRAYREPECERARKTLESDHGDPITLLNAYKEWLELKQCRVDYRRGDDQREN 831

Query: 709 SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLL 768
           +K WC+RRG+EEQRFYE+TKLR QF+ +L D GL+      + +L+S ERA+RHGE+K L
Sbjct: 832 TKSWCRRRGLEEQRFYEITKLRRQFQDLLQDCGLME--AAGEENLTSSERAIRHGELKQL 889

Query: 769 QAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEE 801
           + +++    EAP++R++LK+D  + +E+ EE++
Sbjct: 890 KELRKAHRMEAPRKRQLLKSD-PWGLEDGEEDD 921



 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/276 (39%), Positives = 153/276 (55%), Gaps = 43/276 (15%)

Query: 1181 DLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFS 1240
            +L+SG+TA S++D+  LK+IL SGLYPQVAI D++N  +   E  FH   K + +LHP  
Sbjct: 942  ELVSGATACSYRDLMTLKLILVSGLYPQVAIADDYNYCKGPTEQFFHTNAKPYATLHPMG 1001

Query: 1241 VFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPAL 1300
             F +   +L++ E DI++     K   R  +SS+HQLL Y++LLET+K +L+N LRMPA 
Sbjct: 1002 YFGNNHQILQLDEHDIIEKAGLYK--SRQPLSSRHQLLCYLTLLETNKTYLMNTLRMPAA 1059

Query: 1301 QTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEA-------------------------- 1334
            QTLLLF+  I TN  F+R++ D+W+ V  P  E+                          
Sbjct: 1060 QTLLLFAHTIDTNLTFSRIICDAWLCVDFPSPESGQQLLLKASNLRRLWNRMLAEKLKVL 1119

Query: 1335 KSTAD-----------VNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYR--RTG 1381
              TAD           V Q+ + L  +L QFM+  T + Y++RR+L AD+KTMY+    G
Sbjct: 1120 TQTADSELTKEERGKTVEQMNYELWAELAQFMN--TEVCYTVRRMLPADVKTMYKGPSFG 1177

Query: 1382 AESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYDW 1417
             E+     NPF   F  V  ET GGV +T  +VY W
Sbjct: 1178 EEAIEVDPNPFADGFVAVANETKGGVHITENIVYGW 1213



 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/124 (66%), Positives = 103/124 (83%)

Query: 16  YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL 75
           YLDF+QKE+F+ L K+R  Q +LPVA+++ EI+  V  E+VVI+AGDTGCGKSTQ+PQYL
Sbjct: 289 YLDFRQKERFNKLRKLRRAQANLPVAKHRDEIVAAVQNEQVVILAGDTGCGKSTQVPQYL 348

Query: 76  VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
             AGF +IACTQPRRIACISL+KRVA+E L +Y   VGYQIRFE+ + ++T I+FITEGL
Sbjct: 349 FHAGFDKIACTQPRRIACISLAKRVAHEMLCEYGTQVGYQIRFERSKSQQTNILFITEGL 408

Query: 136 LLRQ 139
           LLRQ
Sbjct: 409 LLRQ 412



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 88/120 (73%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPG+CYRLYSE+Q+     Y+T EI +V ++SLLL ++ MGL + R FPF+E PPA+N
Sbjct: 654 RTGPGICYRLYSEKQFQDFEAYTTAEILKVPLESLLLQMISMGLPNSRMFPFVEPPPADN 713

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE+++ +L  H A+ + E++T LG+ L+ +PVDI +GKML+ G +F Q+  +L L  AL+
Sbjct: 714 IENAIMNLKHHEALTNDEKLTPLGKALARIPVDISIGKMLLMGCVFQQLQPVLTLAAALS 773



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 50/61 (81%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q++ +  LS Y V++LDE+HERHLHGDFLLG+ KCL+ +  ++K++LMSATINI+LF  Y
Sbjct: 412  QLSTEEKLSQYSVILLDEVHERHLHGDFLLGITKCLIRARPDLKLVLMSATINIKLFGDY 471

Query: 1175 F 1175
            F
Sbjct: 472  F 472



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 22/164 (13%)

Query: 137  LRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIE 196
            L QD GL+      + +L+S ERA+RHGE+K L+ +++    EAP++R++LK+D  + +E
Sbjct: 859  LLQDCGLME--AAGEENLTSSERAIRHGELKQLKELRKAHRMEAPRKRQLLKSD-PWGLE 915

Query: 197  EEEEEEEGERLESMDANEVEFRLKHDPKQVQ--VATDNFLSSYDILILDEVHERHLYG-- 252
            + EE++       +D  +VEFRL HD  ++   V+     S  D++ L  +    LY   
Sbjct: 916  DGEEDD-----GKVDIRDVEFRLSHDSSKLDELVSGATACSYRDLMTLKLILVSGLYPQV 970

Query: 253  ------DFLLGVISPPLHCGGEIVAA----DYFLSSYDVLVLDE 286
                  ++  G      H   +  A      YF +++ +L LDE
Sbjct: 971  AIADDYNYCKGPTEQFFHTNAKPYATLHPMGYFGNNHQILQLDE 1014



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 28/32 (87%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGV 258
           Q++T+  LS Y +++LDEVHERHL+GDFLLG+
Sbjct: 412 QLSTEEKLSQYSVILLDEVHERHLHGDFLLGI 443



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEEE 1086
            A+ + E++T LG+ L+ +PVDI +GKML+ G +F Q+  +L L  AL+    F + +  E
Sbjct: 726  ALTNDEKLTPLGKALARIPVDISIGKMLLMGCVFQQLQPVLTLAAALSVQSPFTNRAYRE 785

Query: 1087 EE-EEAGERLES 1097
             E E A + LES
Sbjct: 786  PECERARKTLES 797



 Score = 47.4 bits (111), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 34/48 (70%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            A+ + E++T LG+ L+ +PVDI +GKML+ G +F Q+  +L L  AL+
Sbjct: 726  ALTNDEKLTPLGKALARIPVDISIGKMLLMGCVFQQLQPVLTLAAALS 773


>gi|312372096|gb|EFR20135.1| hypothetical protein AND_20608 [Anopheles darlingi]
          Length = 1369

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 293/508 (57%), Positives = 391/508 (76%), Gaps = 29/508 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            ++A+++ L  Y V++LDE+HERHLHGDFLLG+ KCL+ +   +K++LMSATINI+LF  Y
Sbjct: 546  QLASEDCLEQYSVIILDEVHERHLHGDFLLGIAKCLIRARPNLKLVLMSATINIKLFADY 605

Query: 370  FNRI-AKIIKVPGRLYPIQLEYHPIVE-----------LDRTKSEKLDPGPYIRILSIID 417
            F+   A+II+VPGRLYPI+L Y P ++              +KS++L+P PYI+IL +ID
Sbjct: 606  FSEEEARIIEVPGRLYPIKLHYMPQLKDAPLVSGEGSRSRSSKSDRLNPEPYIQILQLID 665

Query: 418  KKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAP 477
            +KYP TE+GD+LIF+SG++EI+SI  AA+EYNEK++ WI+LPLHSTLS+ EQD+VF YAP
Sbjct: 666  QKYPPTEKGDLLIFLSGLTEITSICDAAREYNEKTKNWIILPLHSTLSIAEQDKVFDYAP 725

Query: 478  EGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKG 537
            +G+RKCIVSTNIAETS+TIDGIRFVVDSG+VKEMSYD T KM  L+EFWIS+ASAEQRKG
Sbjct: 726  DGMRKCIVSTNIAETSVTIDGIRFVVDSGEVKEMSYDPTTKMQRLKEFWISRASAEQRKG 785

Query: 538  RAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 597
            RAGRTGPGVCYRLY+E+Q+     YST EI +V ++SLLL ++ MGL + R FPF+E PP
Sbjct: 786  RAGRTGPGVCYRLYAEQQFHDFEPYSTAEILKVPLESLLLQMISMGLPNARLFPFIEPPP 845

Query: 598  AENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAA 657
             +NIE+++  L +  A+   E++T LG+ L+ +PVDI +GKML+ G +F Q+  VL+LAA
Sbjct: 846  MDNIENAIVGLKEAEALTEDEKLTPLGKALARIPVDISIGKMLLMGCVFQQLQPVLTLAA 905

Query: 658  VLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRV---------- 707
             LSVQSPFTNRA+RDPDCE ARK LES+HGDP+T+LNAYKEWL +K++R           
Sbjct: 906  ALSVQSPFTNRAYRDPDCEHARKSLESDHGDPITLLNAYKEWLELKQNRTEYSHHHRDRD 965

Query: 708  ------RSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALR 761
                   SK WC+RRG+EEQRFYE+TKLR+QF+ +L D  L+      D  LSS ERA+R
Sbjct: 966  DDRRGENSKTWCRRRGLEEQRFYEITKLRNQFQDLLQDCDLMEAQSSAD-HLSSAERAIR 1024

Query: 762  HGEIKLLQAIKRKKAEEAPKRRKMLKAD 789
            +GE++ L+ +++    EAP++RK+LK+D
Sbjct: 1025 NGELRQLKELRKAHRMEAPRKRKLLKSD 1052



 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/132 (65%), Positives = 112/132 (84%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           +W  ++  YLDF+Q+EKF+ L K+R+TQ +LPVA+++ EI++ V  ERVV++AGDTGCGK
Sbjct: 415 QWLQIVTHYLDFRQREKFAKLRKLRQTQANLPVAKHRDEIVEAVRNERVVVLAGDTGCGK 474

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL +AG++RIACTQPRRIACISLSKRVA+E L++Y   VGYQIRFE+ +   T+
Sbjct: 475 STQVPQYLYRAGYERIACTQPRRIACISLSKRVAHELLAEYRTEVGYQIRFERSKSTHTR 534

Query: 128 IVFITEGLLLRQ 139
           IVFITEGLLLRQ
Sbjct: 535 IVFITEGLLLRQ 546



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 85/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLY+E+Q+     YST EI +V ++SLLL ++ MGL + R FPF+E PP +N
Sbjct: 789 RTGPGVCYRLYAEQQFHDFEPYSTAEILKVPLESLLLQMISMGLPNARLFPFIEPPPMDN 848

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE+++  L +  A+   E++T LG+ L+ +PVDI +GKML+ G +F Q+  +L L  AL+
Sbjct: 849 IENAIVGLKEAEALTEDEKLTPLGKALARIPVDISIGKMLLMGCVFQQLQPVLTLAAALS 908



 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 111/197 (56%), Gaps = 25/197 (12%)

Query: 1240 SVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPA 1299
            S F +   +L+++E +I D P   K   R  +S++HQL+ Y++LLET+K +L N LRMPA
Sbjct: 1065 SFFGNNAQLLQLAETEIEDKPALYK--SRQPLSARHQLVCYLTLLETNKSYLTNTLRMPA 1122

Query: 1300 LQTLLLFSSAIHTNSDFTRLVFDSWIEVFVP----LQEAKSTADVNQLEHSLTRDLVQFM 1355
             QTLLLF+  I TNS  +R+V D+W+ + +     L + +    + Q+ H L  +L QFM
Sbjct: 1123 AQTLLLFAHTIETNSTCSRIVCDAWLSLTITADGELTKGERQQTIEQMNHELWSNLAQFM 1182

Query: 1356 SSATHLAYSIRRLLAADLKTMYRRTGAESG---------VPGSNPFVAEFPMVVEETLGG 1406
            +  T + Y+I++LL ADLK +Y+  G   G         +P  NPF  +F  +     GG
Sbjct: 1183 N--TEVCYTIKKLLPADLKAIYK--GPPMGDDDEEATLEIPSPNPFSDDFQPLPNAVKGG 1238

Query: 1407 VRVTPYLVY------DW 1417
            + +T ++ Y      DW
Sbjct: 1239 IYLTEHITYGCLVETDW 1255



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 51/62 (82%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+A+++ L  Y V++LDE+HERHLHGDFLLG+ KCL+ +   +K++LMSATINI+LF  Y
Sbjct: 546  QLASEDCLEQYSVIILDEVHERHLHGDFLLGIAKCLIRARPNLKLVLMSATINIKLFADY 605

Query: 1175 FN 1176
            F+
Sbjct: 606  FS 607



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 28/32 (87%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGV 258
           Q+A+++ L  Y ++ILDEVHERHL+GDFLLG+
Sbjct: 546 QLASEDCLEQYSVIILDEVHERHLHGDFLLGI 577



 Score = 47.0 bits (110), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 13/93 (13%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNF----------- 1079
            A+   E++T LG+ L+ +PVDI +GKML+ G +F Q+  +L L  AL+            
Sbjct: 861  ALTEDEKLTPLGKALARIPVDISIGKMLLMGCVFQQLQPVLTLAAALSVQSPFTNRAYRD 920

Query: 1080 --VHHSEEEEEEEAGERLESMDANEVEFRLKHD 1110
                H+ +  E + G+ +  ++A +    LK +
Sbjct: 921  PDCEHARKSLESDHGDPITLLNAYKEWLELKQN 953



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 33/48 (68%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            A+   E++T LG+ L+ +PVDI +GKML+ G +F Q+  +L L  AL+
Sbjct: 861  ALTEDEKLTPLGKALARIPVDISIGKMLLMGCVFQQLQPVLTLAAALS 908



 Score = 43.9 bits (102), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 137  LRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKAD 190
            L QD  L+      D  LSS ERA+R+GE++ L+ +++    EAP++RK+LK+D
Sbjct: 1000 LLQDCDLMEAQSSAD-HLSSAERAIRNGELRQLKELRKAHRMEAPRKRKLLKSD 1052


>gi|390339430|ref|XP_003725001.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like
           [Strongylocentrotus purpuratus]
          Length = 1160

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 287/479 (59%), Positives = 373/479 (77%), Gaps = 5/479 (1%)

Query: 314 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
           D  LS Y VL+LDE+HERHLHGDFLLGV++C++    ++K++LMSATINI LF  YF + 
Sbjct: 277 DPVLSQYSVLILDEVHERHLHGDFLLGVLRCMMEQRDDLKLVLMSATINISLFSNYF-KD 335

Query: 374 AKIIKVPGRLYPIQLEYHPIVELDR-TKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFM 432
           A +I+VPGRLYPIQ+EY PI E ++ +KSE+LD  PY+RI+  ID KYP +ERGD+L+F+
Sbjct: 336 APVIQVPGRLYPIQVEYVPIKESEQGSKSERLDARPYLRIMQRIDHKYPDSERGDLLVFL 395

Query: 433 SGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
           SG+SEISS+V AA+ Y  ++  WIVLPLHS+LS+ EQD+ F  +PEG+RKCIVSTNIAET
Sbjct: 396 SGVSEISSVVEAAKMYASQTNRWIVLPLHSSLSVAEQDKAFDISPEGVRKCIVSTNIAET 455

Query: 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
           S+TIDG+RF+VDSGKVKEM+Y+  AKM  LQEFWIS+AS+EQRKGRAGRTGPGVC+RLY 
Sbjct: 456 SVTIDGVRFIVDSGKVKEMNYNSQAKMQQLQEFWISRASSEQRKGRAGRTGPGVCFRLYG 515

Query: 553 EEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHG 612
           E+ Y     YSTPEI+RV +DSLLL +V +GL   R+FPF+EAPPA +IE+S+  L + G
Sbjct: 516 EDDYDAFQAYSTPEIQRVPLDSLLLQMVALGLKRPREFPFIEAPPANSIENSITFLKEQG 575

Query: 613 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRD 672
           A+  KER+T +GR LS LPVD+ +GKML+ G++F  ID VLS+AA LSVQSPFT+RA RD
Sbjct: 576 ALSEKERLTPVGRMLSQLPVDVVIGKMLIMGTIFKMIDPVLSIAAALSVQSPFTSRAHRD 635

Query: 673 PDCETARKELESNHGDPLTVLNAYKEWLGVKKD-RVRSKKWCKRRGIEEQRFYEVTKLRS 731
            D  +ARK LES+HGDP T+LNAY EW+ +K      S+KWCKRRG+EEQRFYE++KL+ 
Sbjct: 636 HDAMSARKSLESDHGDPFTLLNAYDEWIQMKASGGSSSRKWCKRRGLEEQRFYEMSKLKK 695

Query: 732 QFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 790
           QFK++L D+  +  +       SS ER  R+ E K L+ +KR K + + K+RK+LK +N
Sbjct: 696 QFKELL-DTNNLLGMKDARREYSSLERQSRNRERKRLRELKR-KTQNSSKKRKLLKLEN 752



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/267 (37%), Positives = 143/267 (53%), Gaps = 54/267 (20%)

Query: 1191 HKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLR 1250
            ++++ +LKVIL SGLYPQ+AI D+ N+     + +FH K K FV LHP  +F + PDVL 
Sbjct: 797  NREINLLKVILCSGLYPQLAIADDCNSYRKESDQVFHTKAKPFVVLHPTGIFATNPDVL- 855

Query: 1251 ISEDDIVDPPPGLKLP-----GRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLL 1305
                   +PP G  LP      R  +S+KHQLL Y+SLLET+KP+L+N +R+PALQT+LL
Sbjct: 856  -------EPPDGDTLPEETTGKRGALSAKHQLLSYVSLLETNKPYLMNTMRVPALQTMLL 908

Query: 1306 FSSAIHTNSDFTRLVFDSWIEVFVPLQEAK------------------------------ 1335
            ++ ++ TN   TRL+ D W+E      EA                               
Sbjct: 909  YARSLDTNQQCTRLIVDEWLEFCFADSEAAEDILPVVLHLRATWIKVLEMRLKESQRSLN 968

Query: 1336 -STAD--VNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGS--N 1390
               AD  V  LE  L R L +++SS  H+ Y++R+L A DL+ +Y   G+  G+  S  +
Sbjct: 969  FGAADLRVVHLERLLARKLAEYLSS--HVEYTMRKLGATDLQHLY--IGSSGGLLKSSDD 1024

Query: 1391 PFVAEFPMVVE--ETLGGVRVTPYLVY 1415
             F + F    E   T GG +VT ++ Y
Sbjct: 1025 EFFSTFSKDSEPHPTKGGWKVTDFMTY 1051



 Score =  156 bits (395), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 107/132 (81%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E+K +L  YL F QK++F+ ++K+R+ Q +LP+A+Y++ I++ V K  VVI+AGDTGCGK
Sbjct: 142 EFKKVLLLYLGFNQKQQFNKVVKLRKDQCNLPIAKYRETIVEAVRKNNVVIVAGDTGCGK 201

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +A TQPRRIACISL+KRV YETL +Y + VGYQIRFE  + + TK
Sbjct: 202 STQVPQYLMSAGFDSVAVTQPRRIACISLAKRVGYETLHEYGSQVGYQIRFETTKTQATK 261

Query: 128 IVFITEGLLLRQ 139
           ++F+TEGLLLRQ
Sbjct: 262 LLFLTEGLLLRQ 273



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 89/120 (74%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY E+ Y     YSTPEI+RV +DSLLL +V +GL   R+FPF+EAPPA +
Sbjct: 504 RTGPGVCFRLYGEDDYDAFQAYSTPEIQRVPLDSLLLQMVALGLKRPREFPFIEAPPANS 563

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE+S+  L + GA+  KER+T +GR LS LPVD+ +GKML+ G++F  ID +L +  AL+
Sbjct: 564 IENSITFLKEQGALSEKERLTPVGRMLSQLPVDVVIGKMLIMGTIFKMIDPVLSIAAALS 623



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 48/61 (78%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D  LS Y VL+LDE+HERHLHGDFLLGV++C++    ++K++LMSATINI LF  Y
Sbjct: 273  QLQLDPVLSQYSVLILDEVHERHLHGDFLLGVLRCMMEQRDDLKLVLMSATINISLFSNY 332

Query: 1175 F 1175
            F
Sbjct: 333  F 333



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 36/49 (73%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+  KER+T +GR LS LPVD+ +GKML+ G++F  ID +L +  AL+
Sbjct: 575  GALSEKERLTPVGRMLSQLPVDVVIGKMLIMGTIFKMIDPVLSIAAALS 623



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 36/49 (73%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+  KER+T +GR LS LPVD+ +GKML+ G++F  ID +L +  AL+
Sbjct: 575  GALSEKERLTPVGRMLSQLPVDVVIGKMLIMGTIFKMIDPVLSIAAALS 623



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 27/33 (81%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  D  LS Y +LILDEVHERHL+GDFLLGV+
Sbjct: 273 QLQLDPVLSQYSVLILDEVHERHLHGDFLLGVL 305


>gi|405952639|gb|EKC20426.1| Putative ATP-dependent RNA helicase DHX34 [Crassostrea gigas]
          Length = 1211

 Score =  591 bits (1523), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 283/495 (57%), Positives = 381/495 (76%), Gaps = 4/495 (0%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++ +D  LS Y+V+V+DE+HERH+H DFLLGV+KCLL    ++K++LMSATINI LF  Y
Sbjct: 330 QMTSDALLSQYNVIVIDEVHERHIHTDFLLGVMKCLLQHRKDLKLVLMSATININLFSNY 389

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELD-RTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           F+  A ++KVPGRLYPIQLEY P  + + R+K+++LDP PY+RI+  ID KYP TERGD+
Sbjct: 390 FDG-APVVKVPGRLYPIQLEYVPSRKDEFRSKNDRLDPSPYLRIMQTIDTKYPLTERGDL 448

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIF+SG+SEI ++V AA+ Y ++++ WIVLPLH TLS++EQD+VF + PEG+RKCIVSTN
Sbjct: 449 LIFLSGMSEIMAVVEAAKAYAQQTKRWIVLPLHGTLSVDEQDKVFDFPPEGVRKCIVSTN 508

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDG+RF++DSGKVKEM++D   KM  LQEFWIS+ASAEQRKGRAGRTGPGVCY
Sbjct: 509 IAETSVTIDGVRFIIDSGKVKEMTFDPKYKMQRLQEFWISQASAEQRKGRAGRTGPGVCY 568

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY E  +    EY+TPEI+RVS+DSL+L ++ MGL DVRKFPFLE P   +IE+++  L
Sbjct: 569 RLYEESDFHSFQEYATPEIQRVSLDSLILQMLSMGLPDVRKFPFLEEPEMSSIENALYFL 628

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            +  A+   E++T +G+ LS LPV++  GKML+ GS+FH ID VLS+AA LSVQSPFT++
Sbjct: 629 KEQNAVTEDEKLTPIGQMLSRLPVEVITGKMLIMGSIFHMIDPVLSIAAALSVQSPFTSK 688

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTK 728
           A  + D    RK LES+HGDP T+LNA+ EW+ VK     +KKWC+RRG+EEQRFYE+ K
Sbjct: 689 AHSNYDAMNTRKPLESDHGDPFTLLNAFDEWIQVKSKGQDTKKWCRRRGLEEQRFYEMIK 748

Query: 729 LRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK- 787
           L+ QFK +L D  L+      ++  +S ER  +HG+ K L  +K++K  E+ KRRK+LK 
Sbjct: 749 LKEQFKTLLMDHNLLLKEDPRESFTTSDERRRKHGDRKRLGELKKEKNRES-KRRKVLKL 807

Query: 788 ADNAYEIEEEEEEEE 802
            D+ + I ++E+EE+
Sbjct: 808 EDDDFVISDDEKEED 822



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 107/132 (81%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           ++K +L  YLDF QK+KF+ L KIR  Q +LP+ QY+Q I+D + + ++V++AGDTGCGK
Sbjct: 199 QFKHILLYYLDFLQKQKFNKLKKIRSDQENLPIFQYRQMILDKLEQNQIVVVAGDTGCGK 258

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AG+  IACTQPRRIACISLSKRV YETL++Y + V +Q+RFEK +   T+
Sbjct: 259 STQVPQYLLAAGYTGIACTQPRRIACISLSKRVGYETLNEYGSEVAFQVRFEKTKTRFTR 318

Query: 128 IVFITEGLLLRQ 139
           I+F+TEGLLLRQ
Sbjct: 319 ILFLTEGLLLRQ 330



 Score =  147 bits (370), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/266 (35%), Positives = 143/266 (53%), Gaps = 52/266 (19%)

Query: 1193 DVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLR-- 1250
            ++ +LK+IL SGLYPQVA+ DE N+  +  E  FH K K F+ LHP  VF  +P++LR  
Sbjct: 855  EINLLKIILCSGLYPQVALADENNSGRSDAEQAFHTKTKPFLLLHPTCVFALRPELLRST 914

Query: 1251 -ISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSA 1309
             + ED+    P  L    R  +S+ HQLL Y+SLLET+KP+L+N +R+PALQT+ +FS++
Sbjct: 915  EMKEDETC--PSDL----RGKLSNNHQLLAYVSLLETNKPYLINTMRVPALQTVTMFSNS 968

Query: 1310 IHTNSDFTRLVFDSWIEV-FVPLQEAKST-----------------------------AD 1339
            I T++   RLV D W+E+ FV  + A +T                               
Sbjct: 969  IDTDAACMRLVCDGWLEIRFVDEETASNTLSSLIQLRATWQNLLKLRLKDTLKSLDEDKR 1028

Query: 1340 VN----QLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGSNPFVAE 1395
            VN    QLE  L + L +++S    + Y+IRR++AA+   +YR    E+G  G N  + +
Sbjct: 1029 VNPRARQLEKILAKKLSEYLS--CEVCYAIRRVMAAEQNRLYRGPDREAG--GKNRILND 1084

Query: 1396 F-----PMVVEETLGGVRVTPYLVYD 1416
                     V    GG+++  YL Y+
Sbjct: 1085 VLKSGSEGKVHPVKGGIQINHYLTYN 1110



 Score =  136 bits (343), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 63/120 (52%), Positives = 87/120 (72%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLY E  +    EY+TPEI+RVS+DSL+L ++ MGL DVRKFPFLE P   +
Sbjct: 561 RTGPGVCYRLYEESDFHSFQEYATPEIQRVSLDSLILQMLSMGLPDVRKFPFLEEPEMSS 620

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE+++  L +  A+   E++T +G+ LS LPV++  GKML+ GS+FH ID +L +  AL+
Sbjct: 621 IENALYFLKEQNAVTEDEKLTPIGQMLSRLPVEVITGKMLIMGSIFHMIDPVLSIAAALS 680



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 50/62 (80%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+ +D  LS Y+V+V+DE+HERH+H DFLLGV+KCLL    ++K++LMSATINI LF  Y
Sbjct: 330  QMTSDALLSQYNVIVIDEVHERHIHTDFLLGVMKCLLQHRKDLKLVLMSATININLFSNY 389

Query: 1175 FN 1176
            F+
Sbjct: 390  FD 391



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 34/49 (69%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
             A+   E++T +G+ LS LPV++  GKML+ GS+FH ID +L +  AL+
Sbjct: 632  NAVTEDEKLTPIGQMLSRLPVEVITGKMLIMGSIFHMIDPVLSIAAALS 680



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 34/49 (69%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
             A+   E++T +G+ LS LPV++  GKML+ GS+FH ID +L +  AL+
Sbjct: 632  NAVTEDEKLTPIGQMLSRLPVEVITGKMLIMGSIFHMIDPVLSIAAALS 680



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 28/33 (84%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+ +D  LS Y+++++DEVHERH++ DFLLGV+
Sbjct: 330 QMTSDALLSQYNVIVIDEVHERHIHTDFLLGVM 362



 Score = 47.0 bits (110), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 64/110 (58%), Gaps = 16/110 (14%)

Query: 123 REKTKIVFITEGLLLRQDSGLITDIPGPDASLS-SRERALRHGEIKLLQAIKRKKAEEAP 181
           +E+ K + +   LLL++D         P  S + S ER  +HG+ K L  +K++K  E+ 
Sbjct: 750 KEQFKTLLMDHNLLLKED---------PRESFTTSDERRRKHGDRKRLGELKKEKNRES- 799

Query: 182 KRRKMLK-ADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVAT 230
           KRRK+LK  D+ + I ++E+EE+    +  D  ++EFRL H+  ++Q ++
Sbjct: 800 KRRKVLKLEDDDFVISDDEKEED----QGDDIKDLEFRLSHNLSKLQESS 845


>gi|195133696|ref|XP_002011275.1| GI16089 [Drosophila mojavensis]
 gi|193907250|gb|EDW06117.1| GI16089 [Drosophila mojavensis]
          Length = 1134

 Score =  583 bits (1504), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 286/529 (54%), Positives = 391/529 (73%), Gaps = 23/529 (4%)

Query: 313 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR 372
           ADN L  YDVL+LDEIHER+L GDFLLGV KCLL +  ++K+ILMSATIN+ELFH YF  
Sbjct: 251 ADN-LEQYDVLILDEIHERNLFGDFLLGVTKCLLRAKPQLKLILMSATINVELFHGYFKE 309

Query: 373 I-AKIIKVPGRLYPIQLEYHPIVELD-----------RTKSEKLDPGPYIRILSIIDKKY 420
             A++++VPGRL+PI+L+Y P   L+           R KS +LDP P+I++LS+ID++Y
Sbjct: 310 EGARLLQVPGRLFPIKLKYMPPPALELKAGQATAGNKREKSSRLDPAPFIQVLSLIDQQY 369

Query: 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL 480
           P TERGDVLIF+SG++EI  +  A QEY ++   W++LPLHS L+L EQD+VF YAP+G+
Sbjct: 370 PTTERGDVLIFVSGVNEIDVVCDAVQEYAKEQTHWLLLPLHSGLALAEQDKVFDYAPDGM 429

Query: 481 RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540
           RKCIVSTNIAETS+T+DG+RFV+DSGKVKEMSYD + K   L+EFW+SK+SAEQRKGRAG
Sbjct: 430 RKCIVSTNIAETSLTVDGVRFVIDSGKVKEMSYDASCKGQRLKEFWVSKSSAEQRKGRAG 489

Query: 541 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 600
           RTGPGVC+RLY+++Q+     Y  PEI RV +D++LL +V MGL DVR FPF+EAP AE 
Sbjct: 490 RTGPGVCFRLYTQQQFDAFEAYPLPEIYRVPLDTMLLQMVSMGLPDVRAFPFIEAPDAER 549

Query: 601 IESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           IE ++ SL QH A+  +E++T LG  L+ LPV++ +GKML+ G +F +++ +L+LAA+LS
Sbjct: 550 IEQTILSLKQHCALSVEEKITPLGSSLAHLPVELSIGKMLLMGCVFPELEQLLTLAAMLS 609

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEE 720
           VQ+P T RAF D  CE  R++ ES+ GD  T++ A+ EWL +K  R  ++KWC++ GIEE
Sbjct: 610 VQNPLTTRAFTDQRCERERQQYESDQGDLFTLMRAFHEWLQLKMSRESTRKWCQKLGIEE 669

Query: 721 QRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAP 780
           QRFYE+ KLR QF+++L    + T     +  L SRERA RHGE++ L+A+KR++  E P
Sbjct: 670 QRFYELCKLRQQFQRILESCRMATP---KNEQLDSRERARRHGELRQLKALKRRQRYEQP 726

Query: 781 KRRKMLKADNAYEIEEEEEEEEGERLESRTGPGVCYRL-YSEEQYSLLA 828
           ++RK+LK    +E E+E++EE GE +       V +RL +   Q +LLA
Sbjct: 727 RQRKLLKR-QPHEAEQEDDEELGEDMRD-----VDFRLRHDHRQLTLLA 769



 Score =  176 bits (447), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 110/135 (81%)

Query: 5   LYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTG 64
           L  +++ L+  YLDFKQKEKF+ + K+RE Q +LP+A++KQ++  ++   RV+I+AGDTG
Sbjct: 113 LQAQFQQLVLIYLDFKQKEKFNRIKKLREAQKALPIARFKQDLRSSLEASRVLIVAGDTG 172

Query: 65  CGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           CGKSTQ+PQYL + G++ IACTQPRR+AC+SLSKRVA+E L  Y + VG+QIRFE++R +
Sbjct: 173 CGKSTQVPQYLYEFGYRSIACTQPRRLACVSLSKRVAHELLDDYGSKVGFQIRFERNRTQ 232

Query: 125 KTKIVFITEGLLLRQ 139
            T I+FITEGLLLRQ
Sbjct: 233 HTHILFITEGLLLRQ 247



 Score =  165 bits (418), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 147/263 (55%), Gaps = 41/263 (15%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            SH+DV +LK++L SG YPQ+AI DEFN  +   +  FH + K F+SLHP S F    ++L
Sbjct: 776  SHRDVVLLKLLLVSGFYPQLAIADEFNYCKGASQQFFHTQLKPFLSLHPNSHFAKDFELL 835

Query: 1250 RISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSA 1309
            +++E D+ + P       +  +S +HQLL Y SLLET+KP+L+NC+R+PA QTLLLF  A
Sbjct: 836  KLTESDLQEKP--FYYTPKQPLSERHQLLCYQSLLETAKPYLMNCIRLPAAQTLLLFGYA 893

Query: 1310 IHTNSDFTRLVFDSWIEVFVP--------------LQEAKSTADVNQLEH---------- 1345
            I TN   +R+V D W+ +  P              L+   S+   ++L            
Sbjct: 894  IDTNVGLSRIVCDGWLGLDFPQPGSGLQLLSKAIELRRRWSSRLYDKLNELNSSSNDSSS 953

Query: 1346 -----------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVP--GSNPF 1392
                       SL  DL+ FMS    +AYSI+RLL AD KT+Y R+     +    SNPF
Sbjct: 954  VAAAPLHVGSDSLWSDLLDFMS--LDVAYSIKRLLPADQKTLYTRSPPTYRLASLSSNPF 1011

Query: 1393 VAEFPMVVEETLGGVRVTPYLVY 1415
             A+FP+ V E  GG+ V+ ++VY
Sbjct: 1012 AADFPLSVNEEKGGLNVSEHVVY 1034



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 151/314 (48%), Gaps = 38/314 (12%)

Query: 809  RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
            RTGPGVC+RLY+++Q+     Y  PEI RV +D++LL +V MGL DVR FPF+EAP AE 
Sbjct: 490  RTGPGVCFRLYTQQQFDAFEAYPLPEIYRVPLDTMLLQMVSMGLPDVRAFPFIEAPDAER 549

Query: 869  IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
            IE ++ SL QH A+  +E++T LG  L+ LPV++ +GKML+ G +F +++ +L L   L+
Sbjct: 550  IEQTILSLKQHCALSVEEKITPLGSSLAHLPVELSIGKMLLMGCVFPELEQLLTLAAMLS 609

Query: 929  FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERV 988
                 +    T           +   G +      FH+        L L      +++  
Sbjct: 610  VQNPLTTRAFTDQRCERERQQYESDQGDLFTLMRAFHEW-------LQLKMSRESTRKWC 662

Query: 989  TSLG----RFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRF 1044
              LG    RF           ++      F +I     +    N   +DS+ER    G  
Sbjct: 663  QKLGIEEQRFY----------ELCKLRQQFQRILESCRMATPKN-EQLDSRERARRHG-- 709

Query: 1045 LSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEEAGERLESMDANEVE 1104
                  ++   K L     + Q     LL       H +E+E++EE GE     D  +V+
Sbjct: 710  ------ELRQLKALKRRQRYEQPRQRKLLKRQ---PHEAEQEDDEELGE-----DMRDVD 755

Query: 1105 FRLKHDPKQVQVAA 1118
            FRL+HD +Q+ + A
Sbjct: 756  FRLRHDHRQLTLLA 769



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 52/69 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+A  + L  YDVL+LDEIHER+L GDFLLGV KCLL +  ++K+ILMSATIN+ELFH Y
Sbjct: 247  QLAMADNLEQYDVLILDEIHERNLFGDFLLGVTKCLLRAKPQLKLILMSATINVELFHGY 306

Query: 1175 FNRIAKDLL 1183
            F      LL
Sbjct: 307  FKEEGARLL 315



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 60/88 (68%), Gaps = 7/88 (7%)

Query: 151 DASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESM 210
           +  L SRERA RHGE++ L+A+KR++  E P++RK+LK    +E E+E++EE GE     
Sbjct: 696 NEQLDSRERARRHGELRQLKALKRRQRYEQPRQRKLLKR-QPHEAEQEDDEELGE----- 749

Query: 211 DANEVEFRLKHDPKQVQ-VATDNFLSSY 237
           D  +V+FRL+HD +Q+  +A    LSS+
Sbjct: 750 DMRDVDFRLRHDHRQLTLLARSAHLSSH 777



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 27/32 (84%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGV 258
           Q+A  + L  YD+LILDE+HER+L+GDFLLGV
Sbjct: 247 QLAMADNLEQYDVLILDEIHERNLFGDFLLGV 278


>gi|195457132|ref|XP_002075440.1| GK15125 [Drosophila willistoni]
 gi|194171525|gb|EDW86426.1| GK15125 [Drosophila willistoni]
          Length = 1077

 Score =  581 bits (1497), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 281/518 (54%), Positives = 383/518 (73%), Gaps = 17/518 (3%)

Query: 297 LLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356
           ++ + + LL   + VAA+  L  YDVL+LDEIHER+L GDFLLGV KCLL +  ++K+IL
Sbjct: 230 IIFITEGLLLRQLAVAAN--LEQYDVLILDEIHERNLFGDFLLGVTKCLLRAKPDLKLIL 287

Query: 357 MSATINIELFHTYF-NRIAKIIKVPGRLYPIQLEYHPIVELD-----------RTKSEKL 404
           MSATIN+ELFH YF +  A +++VPGRL+PI+L Y P   L+           R +  +L
Sbjct: 288 MSATINVELFHNYFRDEGATLVQVPGRLFPIKLRYMPPPALELKAGQASAKSKRMQGSRL 347

Query: 405 DPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTL 464
           DP P+++ILS+ID++YP TERGDVLIF+SG++EI S+  A +EY  +   W+VLPLHS L
Sbjct: 348 DPAPFVQILSLIDQQYPLTERGDVLIFVSGVNEIDSVCEAIREYAREQSHWLVLPLHSGL 407

Query: 465 SLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQE 524
           +L EQD+VF YAPEG RKCIVSTNIAETS+T+DG+RFVVDSGKVKEMSYD   K   L+E
Sbjct: 408 ALAEQDKVFDYAPEGNRKCIVSTNIAETSLTVDGVRFVVDSGKVKEMSYDAICKGQRLKE 467

Query: 525 FWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGL 584
           FW+SK+SAEQRKGRAGRTGPGVC+RLY ++Q+     Y  PEI RV +D++LL +V MGL
Sbjct: 468 FWVSKSSAEQRKGRAGRTGPGVCFRLYPQQQFEAFEAYPAPEIYRVPLDTMLLQMVSMGL 527

Query: 585 GDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGS 644
            +VR+FPF+EAP  E IE ++  L QH A+   E++T LGR LS+LPVD+ +GKML+ G 
Sbjct: 528 PNVREFPFIEAPEGERIEQTILGLKQHSALSVDEKITPLGRSLSNLPVDLTIGKMLLMGC 587

Query: 645 MFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKK 704
           +F +++ +L+LAA+LSVQ+P T RA +D  CE  R+ LES+ GD  T++  Y+EWL +K 
Sbjct: 588 VFPEVEQLLTLAAMLSVQNPLTTRAHQDQRCERQRQPLESDQGDLFTLIRIYREWLLLKM 647

Query: 705 DRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGE 764
            R  ++KWC   GIEEQRFYEVTKLR QF+++L    +    P  +A+LSS ERA RHGE
Sbjct: 648 RRENTRKWCHGLGIEEQRFYEVTKLRQQFQRILESCNMAK--PQSNATLSSSERATRHGE 705

Query: 765 IKLLQAIKRKKAEEAPKRRKMLKADNAY-EIEEEEEEE 801
           ++ L+A+KR++  E P++RKMLK   +  E++++++E+
Sbjct: 706 LRQLKALKRRQRFEQPRQRKMLKKHQSNGELDDQQDED 743



 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 107/135 (79%), Gaps = 4/135 (2%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVL---KERVVIIAGDTG 64
           +++ L+  Y+DFKQKEKF  + K+RE Q  LP+A+YK+++  T L     RVVI+AGDTG
Sbjct: 108 QFQQLVLIYMDFKQKEKFQKIKKLREAQKQLPIARYKEDL-KTALDSPSSRVVIVAGDTG 166

Query: 65  CGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           CGKSTQ+PQ+L + GF+ IACTQPRR+AC+SLSKRVA+E L  Y + VG+QIRFE+ + +
Sbjct: 167 CGKSTQVPQFLYEFGFKSIACTQPRRLACVSLSKRVAHELLDDYGSKVGFQIRFERSKTQ 226

Query: 125 KTKIVFITEGLLLRQ 139
           +T I+FITEGLLLRQ
Sbjct: 227 RTNIIFITEGLLLRQ 241



 Score =  149 bits (377), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/258 (36%), Positives = 140/258 (54%), Gaps = 38/258 (14%)

Query: 1191 HKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLR 1250
            H+DV +LK++L SG YPQ+A+ DEFN  +   +  FH   K F+SLHP S F    D+L+
Sbjct: 775  HRDVVLLKLLLVSGFYPQLALPDEFNYCKGGSQQFFHTSLKPFLSLHPNSYFAKYFDLLK 834

Query: 1251 ISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAI 1310
            ++E D  +  P    P +  +S +HQL+ Y SLLET+KP+L+NC+R+PA QTLLLF  +I
Sbjct: 835  LNESDF-ESKPDYYTP-KQPLSRRHQLICYQSLLETAKPYLMNCIRLPAAQTLLLFGYSI 892

Query: 1311 HTNSDFTRLVFDSWI--------------------------EVFVPLQEAKSTADVN--- 1341
             TN   +R+V D W+                          +++  L E  S+   N   
Sbjct: 893  DTNLGLSRIVCDGWLALDLPMPGSGLQLLTKAINLRAKWHKQLYAKLDELNSSDATNPSN 952

Query: 1342 ----QLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGSNPFVAEFP 1397
                +  H+L +D++ FMS    + Y ++RLL ADLK +Y +      +  +NPF  ++P
Sbjct: 953  DVHTEKSHNLWQDILDFMS--LDVTYGLKRLLPADLKKLYNQHSDAVKL-DNNPFGRDYP 1009

Query: 1398 MVVEETLGGVRVTPYLVY 1415
            M      GG+ VT  +VY
Sbjct: 1010 MTPNLEKGGLNVTENVVY 1027



 Score =  133 bits (334), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 85/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY ++Q+     Y  PEI RV +D++LL +V MGL +VR+FPF+EAP  E 
Sbjct: 484 RTGPGVCFRLYPQQQFEAFEAYPAPEIYRVPLDTMLLQMVSMGLPNVREFPFIEAPEGER 543

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE ++  L QH A+   E++T LGR LS+LPVD+ +GKML+ G +F +++ +L L   L+
Sbjct: 544 IEQTILGLKQHSALSVDEKITPLGRSLSNLPVDLTIGKMLLMGCVFPEVEQLLTLAAMLS 603



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 2/64 (3%)

Query: 1112 KQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELF 1171
            +Q+ VAA+  L  YDVL+LDEIHER+L GDFLLGV KCLL +  ++K+ILMSATIN+ELF
Sbjct: 240  RQLAVAAN--LEQYDVLILDEIHERNLFGDFLLGVTKCLLRAKPDLKLILMSATINVELF 297

Query: 1172 HTYF 1175
            H YF
Sbjct: 298  HNYF 301



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 56/79 (70%), Gaps = 3/79 (3%)

Query: 148 PGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERL 207
           P  +A+LSS ERA RHGE++ L+A+KR++  E P++RKMLK    ++   E ++++ E +
Sbjct: 688 PQSNATLSSSERATRHGELRQLKALKRRQRFEQPRQRKMLK---KHQSNGELDDQQDEDV 744

Query: 208 ESMDANEVEFRLKHDPKQV 226
            S D  +V+FRL++D +Q+
Sbjct: 745 HSEDIRDVDFRLQNDHRQL 763



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 26/32 (81%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGV 258
           Q+A    L  YD+LILDE+HER+L+GDFLLGV
Sbjct: 241 QLAVAANLEQYDVLILDEIHERNLFGDFLLGV 272



 Score = 47.0 bits (110), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
             A+   E++T LGR LS+LPVD+ +GKML+ G +F +++ +L L   L+
Sbjct: 555  SALSVDEKITPLGRSLSNLPVDLTIGKMLLMGCVFPEVEQLLTLAAMLS 603



 Score = 47.0 bits (110), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
             A+   E++T LGR LS+LPVD+ +GKML+ G +F +++ +L L   L+
Sbjct: 555  SALSVDEKITPLGRSLSNLPVDLTIGKMLLMGCVFPEVEQLLTLAAMLS 603


>gi|195398775|ref|XP_002057996.1| GJ15737 [Drosophila virilis]
 gi|194150420|gb|EDW66104.1| GJ15737 [Drosophila virilis]
          Length = 1157

 Score =  577 bits (1487), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 288/555 (51%), Positives = 396/555 (71%), Gaps = 20/555 (3%)

Query: 297 LLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356
           +L + + LL   + VA +  L  YDVL+LDEIHER+L GDFLLGV KCLL +  E+K+IL
Sbjct: 235 ILFITEGLLLRQLAVAPN--LEQYDVLILDEIHERNLFGDFLLGVTKCLLRAKPELKLIL 292

Query: 357 MSATINIELFHTYF-NRIAKIIKVPGRLYPIQLEYHPIVELD------------RTKSEK 403
           MSATIN+ELFH YF +  A++++VPGRL+PI+L Y P   L+            R++S +
Sbjct: 293 MSATINVELFHGYFKDEGAQLLQVPGRLFPIKLRYMPPPALELKAGQATAGSSKRSQSAR 352

Query: 404 LDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHST 463
           LDP P+I++LS+ID++YP TERGDVLIF+SG++EI SI  A +EY ++   W+VLPLHS 
Sbjct: 353 LDPAPFIQVLSLIDQQYPITERGDVLIFVSGVNEIDSICEAIREYAKEQTQWLVLPLHSG 412

Query: 464 LSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQ 523
           L+L EQD+VF YAP+G+RKCIVSTNIAETS+T+DG+RFV+DSGKVKEMSYD + K   L+
Sbjct: 413 LALAEQDKVFDYAPDGMRKCIVSTNIAETSLTVDGVRFVIDSGKVKEMSYDASCKGQRLK 472

Query: 524 EFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 583
           EFW+SK+SAEQRKGRAGRTGPGVC+RL++++Q+     Y  PEI RV +D++LL +V MG
Sbjct: 473 EFWVSKSSAEQRKGRAGRTGPGVCFRLFTQQQFDAFEPYPMPEIYRVPLDTMLLQMVSMG 532

Query: 584 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFG 643
           L DVR FPF+E P  E IE ++ SL QH A+   E++T LG  L++LPV++P+GKML+ G
Sbjct: 533 LPDVRAFPFIEPPETERIEQTILSLKQHCALSVDEKITPLGSSLANLPVELPIGKMLLMG 592

Query: 644 SMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVK 703
            +F +++ +L+LAA+LSVQ+P T RA  D  CE  R+ LES  GD  T+L AY+EWL +K
Sbjct: 593 CVFPEVEQLLTLAAMLSVQNPLTTRAHTDQRCERERQPLESEQGDLFTLLRAYREWLQLK 652

Query: 704 KDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHG 763
             R  ++KWC R GIEEQRFYEV KLR QF+++L    +    P    +L+  ERA RHG
Sbjct: 653 MARENTRKWCHRLGIEEQRFYEVCKLRQQFQRILESCRMAP--PSDAGALNRTERARRHG 710

Query: 764 EIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESRTGPGVCYRL-YSEE 822
           E++ L+A+KR++  E P++RK+LK  +     ++EE+++    E      V +RL +   
Sbjct: 711 ELRQLKALKRRQRLEQPRQRKLLKRQHGAADTQQEEDDDAPDTEDMR--DVDFRLRHDGR 768

Query: 823 QYSLLAEYSTPEIRR 837
           Q +LLA  +  E  R
Sbjct: 769 QLALLARSAQLERHR 783



 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 108/135 (80%)

Query: 5   LYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTG 64
           L  +++ L+  YLDFKQKEKF+ + K+R+ Q +LP+A++K ++   +   RV+I+AGDTG
Sbjct: 112 LQAQFQQLVLIYLDFKQKEKFNRIKKLRQAQRALPIARFKDDLRSALQATRVLIVAGDTG 171

Query: 65  CGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           CGKSTQ+PQYL + G++ IACTQPRR+AC+SLSKRVA+E L  Y N VG+QIRFE++R +
Sbjct: 172 CGKSTQVPQYLYEFGYRSIACTQPRRLACVSLSKRVAHELLDDYGNKVGFQIRFERNRTQ 231

Query: 125 KTKIVFITEGLLLRQ 139
            T I+FITEGLLLRQ
Sbjct: 232 NTHILFITEGLLLRQ 246



 Score =  151 bits (381), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 142/263 (53%), Gaps = 42/263 (15%)

Query: 1191 HKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLR 1250
            H+DV +LK++L SG YPQ+AI DEFN  +   +  FH + K F+SLHP + F    ++L+
Sbjct: 782  HRDVLLLKLLLVSGFYPQLAIADEFNYCKGGGQQFFHTQLKPFLSLHPNAHFAKSYELLK 841

Query: 1251 ISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAI 1310
            +S+ ++    P    P +  +S +HQ+L Y SLLET+KP+L+NC+R+PA QTLLLF  AI
Sbjct: 842  LSDSEL-HAKPDYYTP-KQPLSERHQVLCYQSLLETAKPYLMNCIRLPAAQTLLLFGYAI 899

Query: 1311 HTNSDFTRLVFDSWIEVFVPL--------------------------------QEAKSTA 1338
             TN   +R+V D W+ +  P                                 ++A S A
Sbjct: 900  DTNWGISRIVCDGWLALDFPQPGSGLLLLSRAIELRQRWSSRLYDKLNELNSNEKATSCA 959

Query: 1339 DVNQLEH----SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRT--GAESGVPGSNPF 1392
                  H    +L  DL+ FM  A  + Y I+RLL AD KT+Y R    A   +  +NPF
Sbjct: 960  PPKAAGHDHGDTLWSDLLDFM--ALDVVYGIKRLLPADQKTLYNRCPPPARLMLLPANPF 1017

Query: 1393 VAEFPMVVEETLGGVRVTPYLVY 1415
            V ++P+ V    GG+ ++ ++VY
Sbjct: 1018 VQDYPLSVNSEKGGLNISEHVVY 1040



 Score =  130 bits (326), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 150/314 (47%), Gaps = 33/314 (10%)

Query: 809  RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
            RTGPGVC+RL++++Q+     Y  PEI RV +D++LL +V MGL DVR FPF+E P  E 
Sbjct: 490  RTGPGVCFRLFTQQQFDAFEPYPMPEIYRVPLDTMLLQMVSMGLPDVRAFPFIEPPETER 549

Query: 869  IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
            IE ++ SL QH A+   E++T LG  L++LPV++P+GKML+ G +F +++ +L L   L+
Sbjct: 550  IEQTILSLKQHCALSVDEKITPLGSSLANLPVELPIGKMLLMGCVFPEVEQLLTLAAMLS 609

Query: 929  FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERV 988
                 +    T         P++   G +      + +        L L     ++++  
Sbjct: 610  VQNPLTTRAHTDQRCERERQPLESEQGDLFTLLRAYREW-------LQLKMARENTRKWC 662

Query: 989  TSLG----RFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRF 1044
              LG    RF           ++      F +I     +    + GA++  ER    G  
Sbjct: 663  HRLGIEEQRFY----------EVCKLRQQFQRILESCRMAPPSDAGALNRTERARRHGE- 711

Query: 1045 LSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEEAGERLESMDANEVE 1104
            L  L       K L       Q     LL       H + + ++EE  +  ++ D  +V+
Sbjct: 712  LRQL-------KALKRRQRLEQPRQRKLLKRQ----HGAADTQQEEDDDAPDTEDMRDVD 760

Query: 1105 FRLKHDPKQVQVAA 1118
            FRL+HD +Q+ + A
Sbjct: 761  FRLRHDGRQLALLA 774



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 51/69 (73%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+A    L  YDVL+LDEIHER+L GDFLLGV KCLL +  E+K+ILMSATIN+ELFH Y
Sbjct: 246  QLAVAPNLEQYDVLILDEIHERNLFGDFLLGVTKCLLRAKPELKLILMSATINVELFHGY 305

Query: 1175 FNRIAKDLL 1183
            F      LL
Sbjct: 306  FKDEGAQLL 314



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 148 PGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERL 207
           P    +L+  ERA RHGE++ L+A+KR++  E P++RK+LK  +     ++EE+++    
Sbjct: 694 PSDAGALNRTERARRHGELRQLKALKRRQRLEQPRQRKLLKRQHGAADTQQEEDDDAPDT 753

Query: 208 ESMDANEVEFRLKHDPKQV 226
           E M   +V+FRL+HD +Q+
Sbjct: 754 EDM--RDVDFRLRHDGRQL 770



 Score = 48.9 bits (115), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 26/32 (81%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGV 258
           Q+A    L  YD+LILDE+HER+L+GDFLLGV
Sbjct: 246 QLAVAPNLEQYDVLILDEIHERNLFGDFLLGV 277


>gi|198471057|ref|XP_001355486.2| GA16968 [Drosophila pseudoobscura pseudoobscura]
 gi|198145747|gb|EAL32545.2| GA16968 [Drosophila pseudoobscura pseudoobscura]
          Length = 1123

 Score =  577 bits (1487), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/503 (53%), Positives = 373/503 (74%), Gaps = 14/503 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++A  + L  YDVL+LDEIHER+L GDFLLGV KCLL S  ++K+ILMSATIN+ELF  Y
Sbjct: 240 QLAVSSTLDDYDVLILDEIHERNLFGDFLLGVSKCLLRSKPQLKLILMSATINVELFQCY 299

Query: 370 FNRI-AKIIKVPGRLYPIQLEYHPIVEL-----------DRTKSEKLDPGPYIRILSIID 417
           F    A+ ++VPGRL+PI+L Y P   L           +R++  ++DP P++++L++ID
Sbjct: 300 FKEEGARFLQVPGRLFPIKLRYMPPPALEMKAGQATARSNRSQGTRMDPAPFVQVLNLID 359

Query: 418 KKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAP 477
           ++YP ++RGDVLIF+SG++EI ++  A +EY  +   W+VLPLHS L+L EQD+VF YAP
Sbjct: 360 QQYPSSQRGDVLIFVSGVNEIDTVCEAIKEYAAQQTHWLVLPLHSGLALAEQDKVFDYAP 419

Query: 478 EGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKG 537
           EG RKCIVSTNIAETS+T+DG+RFVVDSGKVKE+SYD   K   L+EFW+SK+SAEQRKG
Sbjct: 420 EGSRKCIVSTNIAETSLTVDGVRFVVDSGKVKEISYDAVCKGQRLKEFWVSKSSAEQRKG 479

Query: 538 RAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 597
           RAGRTGPG C+RLYS++Q+     Y TPEI RV +D++LL +V MGL DVR FPF+E P 
Sbjct: 480 RAGRTGPGFCFRLYSQQQFDAFEAYPTPEIYRVPLDTMLLQMVSMGLPDVRAFPFIEPPE 539

Query: 598 AENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAA 657
           +E IE ++ +L QHGA+  +E++T LG  LS+LPV++ +GKML+ G +F ++D +L+LAA
Sbjct: 540 SERIEQTILALKQHGAVSMEEKITPLGSSLSNLPVELSIGKMLLMGCVFPEVDQLLTLAA 599

Query: 658 VLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRG 717
           +LSVQ+P T+RA+ D  CE  R+ LES  GD  T++NAY+EWL +K  R  ++KWC RRG
Sbjct: 600 MLSVQNPLTSRAYTDAHCERERQSLESTQGDLFTLMNAYREWLQLKMARENTRKWCHRRG 659

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           IEEQRFYEV+K+R QF+++L    +    P    +L+S ERA RHGE++ L+A+KR++  
Sbjct: 660 IEEQRFYEVSKMRQQFQRILESCNMAP--PSTSGALTSAERASRHGEVRQLKALKRRQRF 717

Query: 778 EAPKRRKMLKADNAYEIEEEEEE 800
           E P+  K+LK  ++    EE +E
Sbjct: 718 EQPRHPKLLKHQHSGGQYEEPDE 740



 Score =  167 bits (423), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 103/132 (78%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           +++ +L  YLDFKQKEKF  + K+R+ Q +LP+ ++K ++   +   RVVIIAGDTGCGK
Sbjct: 109 QFQQILLIYLDFKQKEKFKRIKKLRQAQRNLPITRFKDDLRTAMDSSRVVIIAGDTGCGK 168

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQ+L   G++ IACTQPRR+AC+SLSKRVA+E L  Y + VG+QIRFE+ + + T 
Sbjct: 169 STQVPQFLYDFGYRSIACTQPRRLACVSLSKRVAHELLEDYGSKVGFQIRFERRKTQHTN 228

Query: 128 IVFITEGLLLRQ 139
           I+FITEGLLLRQ
Sbjct: 229 ILFITEGLLLRQ 240



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/259 (35%), Positives = 139/259 (53%), Gaps = 41/259 (15%)

Query: 1191 HKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLR 1250
            ++DV +LK++L SG YPQ+AI DEFN  +   +  FH + K F+SLHP S F    + L+
Sbjct: 771  NRDVVLLKLLLVSGFYPQLAISDEFNYCKGGGQQFFHTRMKPFISLHPNSHFAKYYECLK 830

Query: 1251 ISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAI 1310
            ++E D++ P P    P ++ +S +HQLL Y SLLET+KP+L++C+R+P   TLLLF  AI
Sbjct: 831  LAESDLI-PKPAYYTP-KHPLSERHQLLCYQSLLETAKPYLMSCIRLPVAHTLLLFGFAI 888

Query: 1311 HTNSDFTRLVFDSWIEVFVP-----------------------------LQEAKSTADVN 1341
             TN+D T++VFD W+ +  P                             L  ++    V 
Sbjct: 889  DTNADLTQMVFDGWLCLDFPVPDSGMKLLCRAIKLRRRWSSLLYSKLDELNASEKAPAVT 948

Query: 1342 QLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVP-----GSNPFVAEF 1396
                +L  +L+ FM     + Y++ RLL ADLK +Y     ++ +P       NPF  ++
Sbjct: 949  SKNITLWHELIDFM--GLDVPYAVSRLLPADLKRLYTH---QTPMPLLEKLQGNPFDIDY 1003

Query: 1397 PMVVEETLGGVRVTPYLVY 1415
            P     T GG+ V+  +VY
Sbjct: 1004 PPSPNMTKGGINVSENVVY 1022



 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/120 (50%), Positives = 87/120 (72%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPG C+RLYS++Q+     Y TPEI RV +D++LL +V MGL DVR FPF+E P +E 
Sbjct: 483 RTGPGFCFRLYSQQQFDAFEAYPTPEIYRVPLDTMLLQMVSMGLPDVRAFPFIEPPESER 542

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE ++ +L QHGA+  +E++T LG  LS+LPV++ +GKML+ G +F ++D +L L   L+
Sbjct: 543 IEQTILALKQHGAVSMEEKITPLGSSLSNLPVELSIGKMLLMGCVFPEVDQLLTLAAMLS 602



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+A  + L  YDVL+LDEIHER+L GDFLLGV KCLL S  ++K+ILMSATIN+ELF  Y
Sbjct: 240  QLAVSSTLDDYDVLILDEIHERNLFGDFLLGVSKCLLRSKPQLKLILMSATINVELFQCY 299

Query: 1175 FN 1176
            F 
Sbjct: 300  FK 301



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 8/80 (10%)

Query: 148 PGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNA-YEIEEEEEEEEGER 206
           P    +L+S ERA RHGE++ L+A+KR++  E P+  K+LK  ++  + EE +E  E   
Sbjct: 687 PSTSGALTSAERASRHGEVRQLKALKRRQRFEQPRHPKLLKHQHSGGQYEEPDENYE--- 743

Query: 207 LESMDANEVEFRLKHDPKQV 226
               D  +V+FRL+HD +Q+
Sbjct: 744 ----DVRDVDFRLRHDARQL 759



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 27/32 (84%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGV 258
           Q+A  + L  YD+LILDE+HER+L+GDFLLGV
Sbjct: 240 QLAVSSTLDDYDVLILDEIHERNLFGDFLLGV 271



 Score = 48.5 bits (114), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+  +E++T LG  LS+LPV++ +GKML+ G +F ++D +L L   L+
Sbjct: 554  GAVSMEEKITPLGSSLSNLPVELSIGKMLLMGCVFPEVDQLLTLAAMLS 602



 Score = 48.5 bits (114), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 35/49 (71%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+  +E++T LG  LS+LPV++ +GKML+ G +F ++D +L L   L+
Sbjct: 554  GAVSMEEKITPLGSSLSNLPVELSIGKMLLMGCVFPEVDQLLTLAAMLS 602


>gi|242015647|ref|XP_002428462.1| ATP-dependent RNA helicase, putative [Pediculus humanus corporis]
 gi|212513079|gb|EEB15724.1| ATP-dependent RNA helicase, putative [Pediculus humanus corporis]
          Length = 1041

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 266/493 (53%), Positives = 379/493 (76%), Gaps = 6/493 (1%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++ +D  LSSYDV++LDE+HERH+H DF+LG++KCL+     +K++LMSATINI LF  Y
Sbjct: 226 QMLSDPGLSSYDVVILDEVHERHIHSDFVLGLLKCLITKRDNLKLVLMSATININLFSDY 285

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F++ AK+I++PGRL+P+Q+ Y P+ E D  K  K+D  PY++I++IID+KY   E+GD+L
Sbjct: 286 FDKKAKVIEIPGRLFPVQVIYKPVFEDDSKKRSKVDATPYLQIMNIIDEKY-HNEKGDLL 344

Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
           IFMSGISEI  +  A  EY +KS  WIVL LHS+L L +QD+VF YAPEG +KC++STNI
Sbjct: 345 IFMSGISEIMCLADAINEYRKKSPNWIVLMLHSSLPLSDQDKVFDYAPEGYKKCVISTNI 404

Query: 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYR 549
           AETSITIDGIRFV+DSGKVKEM YD   K+  L+EFWIS++SAEQRKGRAGRTGPG+CYR
Sbjct: 405 AETSITIDGIRFVIDSGKVKEMFYDTVYKIQRLKEFWISQSSAEQRKGRAGRTGPGICYR 464

Query: 550 LYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLT 609
           +YSE++Y    EYS PEI++  +D++LL ++ +GL DVRKFPF+E P  +++E+ + SL 
Sbjct: 465 IYSEKEYLTFEEYSLPEIKKSPLDTVLLQMINLGLSDVRKFPFIEEPNKQDLENCILSLK 524

Query: 610 QHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRA 669
           Q  A+   E +T +G+ L++LPV++ +GKML+ GS+F Q+DT + L++ LS+ SP+TN A
Sbjct: 525 QQRALTDDENITEIGKTLTNLPVELTIGKMLIIGSVFCQVDTTIVLSSALSIPSPYTNEA 584

Query: 670 FRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKL 729
           FR+ D E  RK+ ESNHGDPLT+LN Y+EWL +K+++  S++WCK+RG+EEQRFYE+TKL
Sbjct: 585 FRNFDMENLRKDFESNHGDPLTILNLYREWLIIKREKEDSRRWCKKRGLEEQRFYEMTKL 644

Query: 730 RSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKAD 789
             QF+++L +S L+ ++  P+ + +S ER +R GE+KLL+ +K   ++   ++R  LK D
Sbjct: 645 NHQFREILTESELL-ELNEPEPT-TSHERMIRQGEVKLLKRLKANYSKSPSRKR--LKPD 700

Query: 790 NAYEIEEEEEEEE 802
             YE+E + E+ E
Sbjct: 701 -FYEVENDSEKLE 712



 Score =  174 bits (442), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/131 (60%), Positives = 107/131 (81%), Gaps = 3/131 (2%)

Query: 16  YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL 75
           YL+FKQ EKF+ L +IR+ QN LPV+ Y+ EI++++ ++ V+IIAGDTGCGKSTQIPQ+L
Sbjct: 103 YLNFKQIEKFNKLKQIRKIQNELPVSVYESEIVESLKRDNVLIIAGDTGCGKSTQIPQFL 162

Query: 76  VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
           ++ GF  IACTQPRR+AC+SL  R+ YETL+Q+ N +GYQ+RFE+ + + TKIVF+TEGL
Sbjct: 163 MRNGFGSIACTQPRRLACVSLCSRLKYETLTQFQNKIGYQVRFERAKNKDTKIVFLTEGL 222

Query: 136 LLRQ---DSGL 143
           L+RQ   D GL
Sbjct: 223 LVRQMLSDPGL 233



 Score =  170 bits (430), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 99/262 (37%), Positives = 144/262 (54%), Gaps = 32/262 (12%)

Query: 1179 AKDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHP 1238
             ++LL+G    S+KD+ ILK++  SGLYP+ AI DEFN   +  +  FH K K  VSLHP
Sbjct: 729  VRELLNGIHVTSYKDLAILKIVFCSGLYPRFAIADEFNICRS--DQFFHTKIKSHVSLHP 786

Query: 1239 FSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMP 1298
            FS F   PD L++ + DI +P   +K   +   SSKH++L Y ++LET+K +L N ++MP
Sbjct: 787  FSYFGLHPDALKLEDQDIFNPTSDIKYSTK-TFSSKHKILCYFTMLETTKVYLTNMIQMP 845

Query: 1299 ALQTLLLFSSAIHTNSDFTRLVFDSW--IEVFVPLQE----------------------A 1334
            ALQ+ LLFS  I T+ + ++ VFD W  IE+  PLQ                       +
Sbjct: 846  ALQSFLLFSKNIDTSFNLSKFVFDGWILIEILNPLQSETLLIKLINLRTRWDSLVSKRLS 905

Query: 1335 KSTADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGSNPFVA 1394
            +   D  Q+   LT D++ F++  T + Y I+RLL ADLK +Y  TG        N F  
Sbjct: 906  RCQVDRAQI-IKLTDDMITFLN--TDIIYGIKRLLPADLKYLY--TGPTDFELPDNCFDE 960

Query: 1395 EFPMVVEETLGGVRVTPYLVYD 1416
             F M   +  GG+ V+ +L Y+
Sbjct: 961  NFSMKKNDVKGGICVSEFLNYN 982



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 90/120 (75%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPG+CYR+YSE++Y    EYS PEI++  +D++LL ++ +GL DVRKFPF+E P  ++
Sbjct: 456 RTGPGICYRIYSEKEYLTFEEYSLPEIKKSPLDTVLLQMINLGLSDVRKFPFIEEPNKQD 515

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+ + SL Q  A+   E +T +G+ L++LPV++ +GKML+ GS+F Q+DT ++L  AL+
Sbjct: 516 LENCILSLKQQRALTDDENITEIGKTLTNLPVELTIGKMLIIGSVFCQVDTTIVLSSALS 575



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 53/66 (80%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+ +D  LSSYDV++LDE+HERH+H DF+LG++KCL+     +K++LMSATINI LF  Y
Sbjct: 226  QMLSDPGLSSYDVVILDEVHERHIHSDFVLGLLKCLITKRDNLKLVLMSATININLFSDY 285

Query: 1175 FNRIAK 1180
            F++ AK
Sbjct: 286  FDKKAK 291



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 36/48 (75%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            A+   E +T +G+ L++LPV++ +GKML+ GS+F Q+DT ++L  AL+
Sbjct: 528  ALTDDENITEIGKTLTNLPVELTIGKMLIIGSVFCQVDTTIVLSSALS 575



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 36/48 (75%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            A+   E +T +G+ L++LPV++ +GKML+ GS+F Q+DT ++L  AL+
Sbjct: 528  ALTDDENITEIGKTLTNLPVELTIGKMLIIGSVFCQVDTTIVLSSALS 575



 Score = 48.5 bits (114), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 29/33 (87%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+ +D  LSSYD++ILDEVHERH++ DF+LG++
Sbjct: 226 QMLSDPGLSSYDVVILDEVHERHIHSDFVLGLL 258



 Score = 45.1 bits (105), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 11/105 (10%)

Query: 155 SSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANE 214
           +S ER +R GE+KLL+ +K   ++   ++R  LK D  YE+E + E+ E       D  +
Sbjct: 667 TSHERMIRQGEVKLLKRLKANYSKSPSRKR--LKPD-FYEVENDSEKLEP------DIKD 717

Query: 215 VEFRLKHDPKQVQVATDNF-LSSY-DILILDEVHERHLYGDFLLG 257
           +EFRLK+D  +V+   +   ++SY D+ IL  V    LY  F + 
Sbjct: 718 IEFRLKNDGSKVRELLNGIHVTSYKDLAILKIVFCSGLYPRFAIA 762


>gi|332018165|gb|EGI58771.1| Putative ATP-dependent RNA helicase DHX34 [Acromyrmex echinatior]
          Length = 1110

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 265/439 (60%), Positives = 352/439 (80%), Gaps = 10/439 (2%)

Query: 378 KVPGRLYPIQLEYHPIVELD-RTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
           +VPGRLY IQL Y P+   D R K+ + +P PY++I+ IID+KYP  E+GD+LIF+SGIS
Sbjct: 302 QVPGRLYSIQLLYRPVTVQDLRYKNYRFNPSPYVQIMQIIDQKYPVDEKGDLLIFLSGIS 361

Query: 437 EISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITI 496
           EI+++V AA+EY+ K   WIVLPLHSTLS+ EQD+VF YAP+G+RKCIV+TNIAETSITI
Sbjct: 362 EITAVVDAAKEYSIKKNNWIVLPLHSTLSIIEQDKVFDYAPDGVRKCIVATNIAETSITI 421

Query: 497 DGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQY 556
           DGIRFV DSGKVKEMSYD + KM  L+EFWISKASAEQRKGRAGRTGPGVCYR+YSEE+Y
Sbjct: 422 DGIRFVADSGKVKEMSYDPSCKMQRLKEFWISKASAEQRKGRAGRTGPGVCYRIYSEEEY 481

Query: 557 SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDS 616
            +L +YSTPE++RV +DS LL ++ MGL D RKFPF+E PP  +IE+++ SL  H A+  
Sbjct: 482 KMLEKYSTPELQRVPLDSSLLQMIAMGLPDARKFPFIEPPPTNSIENAILSLKDHDALMD 541

Query: 617 KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCE 676
            E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ VLSLAA LS+Q+PFTNRA+RD +CE
Sbjct: 542 NEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALSIQTPFTNRAYRDTECE 601

Query: 677 TARKELESNHGDPLTVLNAYKEWLGVKKDRVR--------SKKWCKRRGIEEQRFYEVTK 728
            +RK+LES+HGDP+T+LNA+KEWL VK++  +        S+KWCKRRG+EEQRFYE+TK
Sbjct: 602 ISRKKLESDHGDPITLLNAFKEWLEVKQENSQEYRSSSNSSRKWCKRRGLEEQRFYEMTK 661

Query: 729 LRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKA 788
           LR+QFK +L D  L+  +  P++S++S ERA+RHGE+KLL+++KR   +  PKRRK LK 
Sbjct: 662 LRAQFKDLLQDCNLLKSLSEPNSSMTSAERAIRHGELKLLKSLKRTYKQSEPKRRKQLKI 721

Query: 789 DNAYEIEEEEEEEEGERLE 807
           +  ++I  E+ +E+  +L+
Sbjct: 722 E-TFDIRLEDNDEDNGKLD 739



 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/267 (41%), Positives = 155/267 (58%), Gaps = 35/267 (13%)

Query: 1180 KDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPF 1239
            ++LL+ STA ++KD+T+LK+IL SGLYPQ A  DEFN  ++  E LFH K K +V+LHP 
Sbjct: 755  QNLLTASTACTYKDLTMLKLILCSGLYPQFACADEFNYCKSTSEQLFHTKAKQYVALHPM 814

Query: 1240 SVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPA 1299
            S F + P VL+I E D++  P   +   +  +S KHQ+L Y+SLLET+KP+LVN LRMPA
Sbjct: 815  SFFGNHPQVLQIEETDVMSIP---RFKSKTPVSCKHQILAYLSLLETTKPYLVNTLRMPA 871

Query: 1300 LQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPL-----------------------QEAKS 1336
             QTLLLF+  I TNS F+ +V D W+ +  P                        Q+ + 
Sbjct: 872  AQTLLLFAHEIDTNSTFSIIVCDLWLMLEFPTPDSGQILLMKAIKLRNKWDFLLNQQLQG 931

Query: 1337 TADVN-------QLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGS 1389
              DVN       ++E  LT++L+++M   T L Y+I+RLL ADLK +Y   G        
Sbjct: 932  PNDVNDERKDFSKVEQCLTQELIEYMH--TMLPYTIKRLLPADLKMIYVGNGCNDKSIEP 989

Query: 1390 NPFVAEFPMVVEETLGGVRVTPYLVYD 1416
            NPF ++F  +     GGV VT  + Y+
Sbjct: 990  NPFQSDFTSIPNIIKGGVFVTNNVTYN 1016



 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/132 (68%), Positives = 111/132 (84%)

Query: 16  YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL 75
           YLDFKQKEKF+ L K+R+TQ +LPV +YK++I++ V  E+V++IAGDTGCGKSTQIP+YL
Sbjct: 179 YLDFKQKEKFAKLKKLRDTQANLPVTRYKEKIVEMVKTEKVIVIAGDTGCGKSTQIPRYL 238

Query: 76  VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
            +AGFQ+IACTQPRRIACISL+KRVA+ETLS   + VGYQIRFEK R ++T I FITEGL
Sbjct: 239 YEAGFQKIACTQPRRIACISLAKRVAFETLSDNLSTVGYQIRFEKQRNQETNITFITEGL 298

Query: 136 LLRQDSGLITDI 147
           LLRQ  G +  I
Sbjct: 299 LLRQVPGRLYSI 310



 Score =  152 bits (384), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 93/120 (77%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYR+YSEE+Y +L +YSTPE++RV +DS LL ++ MGL D RKFPF+E PP  +
Sbjct: 466 RTGPGVCYRIYSEEEYKMLEKYSTPELQRVPLDSSLLQMIAMGLPDARKFPFIEPPPTNS 525

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE+++ SL  H A+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+
Sbjct: 526 IENAILSLKDHDALMDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALS 585



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 62/91 (68%), Gaps = 4/91 (4%)

Query: 137 LRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIE 196
           L QD  L+  +  P++S++S ERA+RHGE+KLL+++KR   +  PKRRK LK +  ++I 
Sbjct: 669 LLQDCNLLKSLSEPNSSMTSAERAIRHGELKLLKSLKRTYKQSEPKRRKQLKIE-TFDIR 727

Query: 197 EEEEEEEGERLESMDANEVEFRLKHDPKQVQ 227
            E+ +E+  +L   D  ++EFR+++D  QVQ
Sbjct: 728 LEDNDEDNGKL---DIKDIEFRMRNDSSQVQ 755



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 5/72 (6%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEEE 1086
            A+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+    F + +  +
Sbjct: 538  ALMDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALSIQTPFTNRAYRD 597

Query: 1087 EEEE-AGERLES 1097
             E E + ++LES
Sbjct: 598  TECEISRKKLES 609



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 36/48 (75%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            A+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L  AL+
Sbjct: 538  ALMDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALS 585


>gi|195479799|ref|XP_002101033.1| GE17390 [Drosophila yakuba]
 gi|194188557|gb|EDX02141.1| GE17390 [Drosophila yakuba]
          Length = 1140

 Score =  574 bits (1479), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/500 (54%), Positives = 373/500 (74%), Gaps = 15/500 (3%)

Query: 300 VIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSA 359
           + + LL   + VAA+  L  YD L+LDEIHER+L GDFLLGV KCLL +  ++K+ILMSA
Sbjct: 239 ITEGLLLRQLAVAAN--LDQYDALILDEIHERNLFGDFLLGVTKCLLRARPQLKLILMSA 296

Query: 360 TINIELFHTYFNR-IAKIIKVPGRLYPIQLEYHP-----------IVELDRTKSEKLDPG 407
           TIN+ELFH YF    A++++VPGRL+PI+L Y P             E  R K  ++DP 
Sbjct: 297 TINVELFHGYFREEGARLVQVPGRLFPIKLRYLPPPALELKAGQATAESKRFKGTRIDPA 356

Query: 408 PYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLE 467
           P++++LS+ID++YP TERGDVLIF+SG++EI S+V A QEY  +   W+VLPLHS  ++ 
Sbjct: 357 PFVQVLSLIDQQYPTTERGDVLIFVSGVNEIESVVEAVQEYATEQTHWLVLPLHSGQAMA 416

Query: 468 EQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWI 527
           EQ +VF YAPEG+RKCIVSTNIAETS+T+DG+RFVVDSGKVKEMSYD   K   L+EFW+
Sbjct: 417 EQGKVFDYAPEGMRKCIVSTNIAETSLTVDGVRFVVDSGKVKEMSYDAICKGQRLKEFWV 476

Query: 528 SKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDV 587
           SK+SA+QRKGRAGRTGPGVC+RLY+ EQ++    Y TPEI RV +D++LL +V MGL DV
Sbjct: 477 SKSSADQRKGRAGRTGPGVCFRLYTAEQFNAFEAYPTPEIYRVPLDTMLLQMVSMGLPDV 536

Query: 588 RKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 647
           R FPF+EAP  E IE ++ +L QH A+  +E++T LG  L++LPV++ +GKML+ G +F 
Sbjct: 537 RAFPFIEAPETERIEQTILALKQHSALSVEEKITPLGSSLANLPVELSIGKMLLMGCVFP 596

Query: 648 QIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRV 707
           +++ +L+LAA+LSVQ+P TNRA  D  C   R+ LES+ GD  T++  Y+EW+ +K  R 
Sbjct: 597 EVEQLLTLAAMLSVQNPLTNRAHTDQRCVRERESLESDQGDIFTLVRLYREWVQLKMRRD 656

Query: 708 RSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKL 767
            +++WC+R GIEEQRFYEVTKLR QF+++L   G++    G D+ L+S ERA RHGE++ 
Sbjct: 657 GTRQWCRRLGIEEQRFYEVTKLRQQFQRILEGCGMVV-ASGSDSQLTSAERATRHGELRH 715

Query: 768 LQAIKRKKAEEAPKRRKMLK 787
           L+A+KR++  E P++RK+LK
Sbjct: 716 LKAMKRRQRFEQPRQRKLLK 735



 Score =  167 bits (423), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 144/259 (55%), Gaps = 39/259 (15%)

Query: 1191 HKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLR 1250
            H+DV ++K++L  G YPQ+AI DEFN  +   +  FH + K F+  HP S F    ++L+
Sbjct: 782  HRDVVLMKLLLGCGFYPQLAISDEFNYCKGGGQQFFHTRLKPFLLQHPNSHFAKHFELLK 841

Query: 1251 ISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAI 1310
            +++ D++ P P    P +  +S +HQLL Y SLLET+KP+L+NC+R+PA QTLLLFS AI
Sbjct: 842  LADSDLL-PKPDFYTP-KQPLSERHQLLCYQSLLETAKPYLINCIRLPAAQTLLLFSFAI 899

Query: 1311 HTNSDFTRLVFDSWIEVFVPL--------------------------------QEAKSTA 1338
             TN+  T++V D W+ + +P                                 QEA S +
Sbjct: 900  DTNAGITQIVCDGWLGLDLPTPGSGMELLSRAIELRRRWSRLLYAKLDDLNSKQEAPSHS 959

Query: 1339 DVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVP--GSNPFVAEF 1396
              ++   +L  DLV +M  A  +AY+IRRLL AD+K +Y      + +     NPF  ++
Sbjct: 960  SDDR-SSTLWHDLVDYM--ALDVAYTIRRLLPADIKRLYSHQAPSTRLTELKENPFAVDY 1016

Query: 1397 PMVVEETLGGVRVTPYLVY 1415
            PM   E  GG+ V+ ++VY
Sbjct: 1017 PMTPNEEKGGLNVSEHVVY 1035



 Score =  167 bits (422), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 104/132 (78%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           +++ LL  YLDF+Q EKF  + K+R++Q +LP+A+++Q++ + +   RVVI+AGDTGCGK
Sbjct: 116 QFRHLLLVYLDFRQAEKFQRIRKLRQSQRNLPIARFRQDLREALDTSRVVIVAGDTGCGK 175

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQ+L   G++ IACTQPRR+AC+SL KRVA+E L  Y + V +QIRFE+ R + T 
Sbjct: 176 STQVPQFLYDFGYRSIACTQPRRLACVSLCKRVAHELLDDYGSRVAFQIRFERSRTQLTN 235

Query: 128 IVFITEGLLLRQ 139
           I+FITEGLLLRQ
Sbjct: 236 IIFITEGLLLRQ 247



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 87/120 (72%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+ EQ++    Y TPEI RV +D++LL +V MGL DVR FPF+EAP  E 
Sbjct: 490 RTGPGVCFRLYTAEQFNAFEAYPTPEIYRVPLDTMLLQMVSMGLPDVRAFPFIEAPETER 549

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE ++ +L QH A+  +E++T LG  L++LPV++ +GKML+ G +F +++ +L L   L+
Sbjct: 550 IEQTILALKQHSALSVEEKITPLGSSLANLPVELSIGKMLLMGCVFPEVEQLLTLAAMLS 609



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 52/64 (81%), Gaps = 2/64 (3%)

Query: 1112 KQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELF 1171
            +Q+ VAA+  L  YD L+LDEIHER+L GDFLLGV KCLL +  ++K+ILMSATIN+ELF
Sbjct: 246  RQLAVAAN--LDQYDALILDEIHERNLFGDFLLGVTKCLLRARPQLKLILMSATINVELF 303

Query: 1172 HTYF 1175
            H YF
Sbjct: 304  HGYF 307



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 57/82 (69%), Gaps = 7/82 (8%)

Query: 149 GPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--ADNAYEIEEEEEEEEGER 206
           G D+ L+S ERA RHGE++ L+A+KR++  E P++RK+LK  A  A E EEE +E +G+ 
Sbjct: 696 GSDSQLTSAERATRHGELRHLKAMKRRQRFEQPRQRKLLKHSAGRAAEDEEERDEPQGD- 754

Query: 207 LESMDANEVEFRLKHDPKQVQV 228
               D  +V+FRL+ DP+Q+ +
Sbjct: 755 ----DMRDVDFRLRFDPRQLSL 772



 Score = 47.4 bits (111), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGV 258
           Q+A    L  YD LILDE+HER+L+GDFLLGV
Sbjct: 247 QLAVAANLDQYDALILDEIHERNLFGDFLLGV 278



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 34/48 (70%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            A+  +E++T LG  L++LPV++ +GKML+ G +F +++ +L L   L+
Sbjct: 562  ALSVEEKITPLGSSLANLPVELSIGKMLLMGCVFPEVEQLLTLAAMLS 609



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 34/48 (70%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            A+  +E++T LG  L++LPV++ +GKML+ G +F +++ +L L   L+
Sbjct: 562  ALSVEEKITPLGSSLANLPVELSIGKMLLMGCVFPEVEQLLTLAAMLS 609


>gi|194892932|ref|XP_001977769.1| GG18058 [Drosophila erecta]
 gi|190649418|gb|EDV46696.1| GG18058 [Drosophila erecta]
          Length = 1140

 Score =  573 bits (1478), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/503 (54%), Positives = 378/503 (75%), Gaps = 15/503 (2%)

Query: 297 LLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356
           ++ + + LL   + VAA+  L  YD L+LDEIHER+L GDFLLGV KCLL +  ++K+IL
Sbjct: 236 IIFITEGLLLRQLAVAAN--LDQYDALILDEIHERNLFGDFLLGVTKCLLRARPQLKLIL 293

Query: 357 MSATINIELFHTYFNRI-AKIIKVPGRLYPIQLEYHPIVELD-----------RTKSEKL 404
           MSATIN+ELFH YF    A++++VPGRL+PI+L Y P   L+           R++S ++
Sbjct: 294 MSATINVELFHGYFREEGARLVQVPGRLFPIKLRYLPPPALELKAGQARSASKRSQSTRI 353

Query: 405 DPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTL 464
           DP P++++LS+ID++YP +ERGDVLIF+SG++EI S+V A QEY  +   W+VLPLHS  
Sbjct: 354 DPAPFVQVLSLIDQQYPTSERGDVLIFVSGVNEIESVVEAVQEYATEQSHWLVLPLHSGQ 413

Query: 465 SLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQE 524
           ++ EQ +VF YAPEG+RKCIVSTNIAETS+T+DG+RFVVDSGKVKEMSYD T+K   L+E
Sbjct: 414 AIAEQGKVFDYAPEGMRKCIVSTNIAETSLTVDGVRFVVDSGKVKEMSYDATSKGQRLKE 473

Query: 525 FWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGL 584
           FW+SK+SA+QRKGRAGRTGPGVC+RLY+ EQ++    Y TPEI RV +D++LL +V MGL
Sbjct: 474 FWVSKSSADQRKGRAGRTGPGVCFRLYTAEQFNAFEAYPTPEIYRVPLDTMLLQMVSMGL 533

Query: 585 GDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGS 644
            DVR FPF+EAP  E IE ++ +L QH A+   E++T LG  L++LPV++ +GKML+ G 
Sbjct: 534 PDVRAFPFIEAPETERIEQTILTLKQHCALSVDEKLTPLGSSLANLPVELSIGKMLLMGC 593

Query: 645 MFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKK 704
           +F +++ +L+LAA+LSVQ+P TNRA  D  C   R+ LES+ GD  T++  Y+EW+ +K 
Sbjct: 594 VFPEMEQLLTLAAMLSVQNPLTNRAHTDQRCVRERESLESDQGDIFTLVRLYREWVQLKM 653

Query: 705 DRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGE 764
            R  +++WC+R GIEEQRFYEVTKLR QF+++L   G++    G D+ L+  ERA RHGE
Sbjct: 654 RRDGTRQWCRRLGIEEQRFYEVTKLRQQFQRILESCGMVV-ASGSDSQLTRAERATRHGE 712

Query: 765 IKLLQAIKRKKAEEAPKRRKMLK 787
           ++ L+A+KR++  E P++RK+LK
Sbjct: 713 LRQLKAMKRRQRFEQPRQRKLLK 735



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 104/132 (78%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           +++ L+  YLDF+Q EKF  + K+R+TQ +LP+A+++QE+ + +   RVVI+AGDTGCGK
Sbjct: 116 QFRHLILVYLDFRQTEKFQRIRKLRQTQRNLPIARFRQELREALDTSRVVIVAGDTGCGK 175

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQ+L   G++ IACTQPRR+AC+SL KRVA+E L  Y + V +QIRFE+ R + T 
Sbjct: 176 STQVPQFLYDFGYRSIACTQPRRLACVSLCKRVAHELLDDYGSRVAFQIRFERSRTQLTN 235

Query: 128 IVFITEGLLLRQ 139
           I+FITEGLLLRQ
Sbjct: 236 IIFITEGLLLRQ 247



 Score =  166 bits (421), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 97/258 (37%), Positives = 144/258 (55%), Gaps = 37/258 (14%)

Query: 1191 HKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLR 1250
            H+DV +LK++L SG YPQ AI DEFN  +   +  FH + K F+  HP S F    ++L+
Sbjct: 782  HRDVVLLKLLLGSGFYPQFAISDEFNYCKGGGQQFFHTRLKPFLLQHPNSHFAKHFELLK 841

Query: 1251 ISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAI 1310
            ++  D++ P P    P ++ +S +HQLL Y SLLET+KP+L+NC+R+PA QTLLLFS AI
Sbjct: 842  LANSDLL-PKPDFYTP-KHPLSERHQLLCYQSLLETAKPYLINCIRLPAAQTLLLFSFAI 899

Query: 1311 HTNSDFTRLVFDSWIEVFVPL----QEAKSTA----------------DVNQLEH----- 1345
             TN+  T++  D W+ + +P+     E  S A                D+N  +      
Sbjct: 900  DTNAGITQIACDDWLGLDLPMPGSGMELLSRAIELRRRWSRLLYAKLDDLNSKQEAHSHS 959

Query: 1346 ------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVP--GSNPFVAEFP 1397
                  +L  DLV +M  A  +AY+IRRLL AD+K +Y      + +     NPF  ++P
Sbjct: 960  SDDRSSALWHDLVDYM--ALDVAYAIRRLLPADIKRLYSHQAPSARLAKLKENPFAVDYP 1017

Query: 1398 MVVEETLGGVRVTPYLVY 1415
            M   E  GG+ V+ ++VY
Sbjct: 1018 MTPNEEKGGLNVSEHVVY 1035



 Score =  130 bits (328), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 86/120 (71%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+ EQ++    Y TPEI RV +D++LL +V MGL DVR FPF+EAP  E 
Sbjct: 490 RTGPGVCFRLYTAEQFNAFEAYPTPEIYRVPLDTMLLQMVSMGLPDVRAFPFIEAPETER 549

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE ++ +L QH A+   E++T LG  L++LPV++ +GKML+ G +F +++ +L L   L+
Sbjct: 550 IEQTILTLKQHCALSVDEKLTPLGSSLANLPVELSIGKMLLMGCVFPEMEQLLTLAAMLS 609



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 52/64 (81%), Gaps = 2/64 (3%)

Query: 1112 KQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELF 1171
            +Q+ VAA+  L  YD L+LDEIHER+L GDFLLGV KCLL +  ++K+ILMSATIN+ELF
Sbjct: 246  RQLAVAAN--LDQYDALILDEIHERNLFGDFLLGVTKCLLRARPQLKLILMSATINVELF 303

Query: 1172 HTYF 1175
            H YF
Sbjct: 304  HGYF 307



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 54/80 (67%), Gaps = 3/80 (3%)

Query: 149 GPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLE 208
           G D+ L+  ERA RHGE++ L+A+KR++  E P++RK+LK       E+EEE +E   ++
Sbjct: 696 GSDSQLTRAERATRHGELRQLKAMKRRQRFEQPRQRKLLKQSAGRAAEDEEERDE---VQ 752

Query: 209 SMDANEVEFRLKHDPKQVQV 228
             D  +V+FRL+ DP+Q+ +
Sbjct: 753 GDDMRDVDFRLRLDPRQLSL 772



 Score = 47.8 bits (112), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGV 258
           Q+A    L  YD LILDE+HER+L+GDFLLGV
Sbjct: 247 QLAVAANLDQYDALILDEIHERNLFGDFLLGV 278



 Score = 40.4 bits (93), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 33/48 (68%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            A+   E++T LG  L++LPV++ +GKML+ G +F +++ +L L   L+
Sbjct: 562  ALSVDEKLTPLGSSLANLPVELSIGKMLLMGCVFPEMEQLLTLAAMLS 609



 Score = 40.4 bits (93), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 33/48 (68%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            A+   E++T LG  L++LPV++ +GKML+ G +F +++ +L L   L+
Sbjct: 562  ALSVDEKLTPLGSSLANLPVELSIGKMLLMGCVFPEMEQLLTLAAMLS 609


>gi|24643238|ref|NP_728244.1| CG32533 [Drosophila melanogaster]
 gi|16198107|gb|AAL13852.1| LD31543p [Drosophila melanogaster]
 gi|22832563|gb|AAF48954.2| CG32533 [Drosophila melanogaster]
 gi|220947294|gb|ACL86190.1| CG32533-PA [synthetic construct]
 gi|220956756|gb|ACL90921.1| CG32533-PA [synthetic construct]
          Length = 1139

 Score =  573 bits (1477), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 271/501 (54%), Positives = 377/501 (75%), Gaps = 13/501 (2%)

Query: 297 LLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356
           +L + + LL   + VAA+  L  YD L+LDEIHER+L GDFLLGV KCLL +  ++K+IL
Sbjct: 236 ILFITEGLLLRQLAVAAN--LDQYDALILDEIHERNLFGDFLLGVTKCLLRARPQLKLIL 293

Query: 357 MSATINIELFHTYFNRI-AKIIKVPGRLYPIQLEYHPIVELD---------RTKSEKLDP 406
           MSATIN+ELFH YF    A++++VPGRL+PI+L Y P   L+         R++  ++DP
Sbjct: 294 MSATINVELFHGYFGEEGARLVQVPGRLFPIKLRYLPPPALELKAGQATSKRSQRNRIDP 353

Query: 407 GPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSL 466
            P++++LS+ID++YP +ERGDVLIF+SG++EI S+V A  EY  +   W+VLPLHS  ++
Sbjct: 354 APFVQVLSLIDQQYPTSERGDVLIFVSGVNEIESVVEAVHEYATEQTHWLVLPLHSGQAI 413

Query: 467 EEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW 526
            +Q +VF YAPEG+RKCIVSTNIAETS+T+DG+RFVVDSGKVKEM++D T K   L+EFW
Sbjct: 414 ADQSKVFDYAPEGMRKCIVSTNIAETSLTVDGVRFVVDSGKVKEMNFDATCKGQRLKEFW 473

Query: 527 ISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGD 586
           +SK+SA+QRKGRAGRTGPGVC+RLY+ EQY+    Y TPEI RV +D++LL +V MGL D
Sbjct: 474 VSKSSADQRKGRAGRTGPGVCFRLYTAEQYNAFEAYPTPEIYRVPLDTMLLQMVSMGLPD 533

Query: 587 VRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMF 646
           VR FPF+EAP  E IE ++ +L QH A+  +E++T LGR L++LPV++ +GKML+ GS+F
Sbjct: 534 VRAFPFIEAPETERIEQTILALKQHCALSVEEKITPLGRSLANLPVELSIGKMLLMGSVF 593

Query: 647 HQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDR 706
            +++ +L+LAA+LSVQ+P TNRA  D  C   R+ LES+HGD  T++  Y  W+ +K  R
Sbjct: 594 PEVEQLLTLAAMLSVQNPLTNRAHTDQRCVRERESLESDHGDLFTLVRLYNVWVQLKMRR 653

Query: 707 VRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIK 766
             +++WC+R GIEEQRFYEVTKLR QF+++L   G++      D+ L+S ERA RHGE++
Sbjct: 654 DGTRQWCRRLGIEEQRFYEVTKLRQQFQRILESCGMVV-ASDSDSQLTSAERATRHGELR 712

Query: 767 LLQAIKRKKAEEAPKRRKMLK 787
            L+A+KR++  E P++RK+LK
Sbjct: 713 QLKAMKRRQRFEQPRQRKLLK 733



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 105/135 (77%)

Query: 5   LYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTG 64
           +  +++ +L  YLDF+Q EKF  + K+R+TQ +LP+A++++++ + +   RVVI+AGDTG
Sbjct: 113 MQSQFRHILLVYLDFRQTEKFQRIRKLRQTQRNLPIARFRKDLREALDTSRVVIVAGDTG 172

Query: 65  CGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           CGKSTQ+PQYL   G++ IACTQPRR+AC+SL KRVA+E L  Y + V +QIRFE+ R +
Sbjct: 173 CGKSTQVPQYLYDFGYRSIACTQPRRLACVSLCKRVAHELLDDYGSRVAFQIRFERSRTK 232

Query: 125 KTKIVFITEGLLLRQ 139
            T I+FITEGLLLRQ
Sbjct: 233 LTNILFITEGLLLRQ 247



 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/248 (37%), Positives = 136/248 (54%), Gaps = 39/248 (15%)

Query: 1202 ASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPP 1261
             SG YPQ+AI DEFN  +   +  FH + K FV  HP S F    ++L+++E D++ P P
Sbjct: 791  GSGFYPQLAISDEFNYCKGGGQQFFHTRLKPFVLQHPNSQFAKHFELLKLTESDLL-PKP 849

Query: 1262 GLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVF 1321
                P +  +S +HQLL Y SLLET+KP+L+NC+R+PA QTLLLFS AI TN+  T++  
Sbjct: 850  DFYTP-KLPLSKRHQLLCYQSLLETAKPYLINCIRLPAAQTLLLFSFAIDTNAGITQIAC 908

Query: 1322 DSWIEVFVPL--------------------------------QEAKSTADVNQLEHSLTR 1349
            D W+ + +P+                                QE+ S +  ++   +L +
Sbjct: 909  DGWLGLDLPMPGSGMELLRRAIELRRRWSRLLYDKLDDLKSKQESPSHSSDDR-SSALWQ 967

Query: 1350 DLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVP--GSNPFVAEFPMVVEETLGGV 1407
            DLV +M  A  +AY+IRRLL AD+K +Y      + +     NPF  +FPM   E  GG+
Sbjct: 968  DLVDYM--ALDVAYAIRRLLPADIKRLYTHQAPSARLAELKENPFAVDFPMTPNEEKGGL 1025

Query: 1408 RVTPYLVY 1415
             V+ ++VY
Sbjct: 1026 NVSEHVVY 1033



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 89/120 (74%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+ EQY+    Y TPEI RV +D++LL +V MGL DVR FPF+EAP  E 
Sbjct: 488 RTGPGVCFRLYTAEQYNAFEAYPTPEIYRVPLDTMLLQMVSMGLPDVRAFPFIEAPETER 547

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE ++ +L QH A+  +E++T LGR L++LPV++ +GKML+ GS+F +++ +L L   L+
Sbjct: 548 IEQTILALKQHCALSVEEKITPLGRSLANLPVELSIGKMLLMGSVFPEVEQLLTLAAMLS 607



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 2/65 (3%)

Query: 1112 KQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELF 1171
            +Q+ VAA+  L  YD L+LDEIHER+L GDFLLGV KCLL +  ++K+ILMSATIN+ELF
Sbjct: 246  RQLAVAAN--LDQYDALILDEIHERNLFGDFLLGVTKCLLRARPQLKLILMSATINVELF 303

Query: 1172 HTYFN 1176
            H YF 
Sbjct: 304  HGYFG 308



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 67/106 (63%), Gaps = 16/106 (15%)

Query: 123 REKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182
           R++ + +  + G+++  DS         D+ L+S ERA RHGE++ L+A+KR++  E P+
Sbjct: 677 RQQFQRILESCGMVVASDS---------DSQLTSAERATRHGELRQLKAMKRRQRFEQPR 727

Query: 183 RRKMLK--ADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQV 226
           +RK+LK  A    E EEE+EE +G+     D  +V+FRL+ DP+Q+
Sbjct: 728 QRKLLKQSAGRVAEDEEEQEEAQGD-----DMRDVDFRLRFDPRQL 768



 Score = 47.8 bits (112), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGV 258
           Q+A    L  YD LILDE+HER+L+GDFLLGV
Sbjct: 247 QLAVAANLDQYDALILDEIHERNLFGDFLLGV 278



 Score = 46.6 bits (109), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 36/48 (75%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            A+  +E++T LGR L++LPV++ +GKML+ GS+F +++ +L L   L+
Sbjct: 560  ALSVEEKITPLGRSLANLPVELSIGKMLLMGSVFPEVEQLLTLAAMLS 607



 Score = 46.6 bits (109), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 36/48 (75%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            A+  +E++T LGR L++LPV++ +GKML+ GS+F +++ +L L   L+
Sbjct: 560  ALSVEEKITPLGRSLANLPVELSIGKMLLMGSVFPEVEQLLTLAAMLS 607


>gi|195059498|ref|XP_001995649.1| GH17651 [Drosophila grimshawi]
 gi|193896435|gb|EDV95301.1| GH17651 [Drosophila grimshawi]
          Length = 1148

 Score =  564 bits (1453), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/504 (53%), Positives = 372/504 (73%), Gaps = 17/504 (3%)

Query: 297 LLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356
           +L + + LL   + VAA+  L  YDVL+LDEIHER+L GDFLLGV KCLL +  ++K+IL
Sbjct: 239 ILFITEGLLLRQLAVAAN--LEQYDVLILDEIHERNLFGDFLLGVTKCLLRAKPQLKLIL 296

Query: 357 MSATINIELFHTYFNR-IAKIIKVPGRLYPIQLEYHPIVELD------------RTKSEK 403
           MSATIN+ELFH +F    A++++VPGRL+PI++ Y P   L+            R++  +
Sbjct: 297 MSATINVELFHNFFKEEGARLLQVPGRLFPIKMRYMPPPALELKAGQATATGSKRSQGAR 356

Query: 404 LDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHST 463
            DP P++++LS+ID++YP TERGDVLIF+SG++EI S+  A +EY ++   W+VLPLHS 
Sbjct: 357 FDPAPFVQVLSLIDQQYPSTERGDVLIFVSGVNEIDSVCEAIKEYAKEQSCWLVLPLHSG 416

Query: 464 LSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQ 523
           L+L EQD+VF Y P+G+RKCIVSTNIAETS+T+DG+RFV+DSGKVKEMSYD + K   L+
Sbjct: 417 LALAEQDKVFDYPPDGMRKCIVSTNIAETSLTVDGVRFVIDSGKVKEMSYDASCKGQRLK 476

Query: 524 EFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 583
           EFW+SK+SAEQRKGRAGRTGPGVC+RL++++Q+     Y TPEI RV +D++LL +V MG
Sbjct: 477 EFWVSKSSAEQRKGRAGRTGPGVCFRLFTQQQFDGFEAYPTPEINRVPLDTMLLQMVSMG 536

Query: 584 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFG 643
           L DVR FPF+E+P AE IE ++  L QH A+   E++T LG  L++LPV++P+GKML+ G
Sbjct: 537 LPDVRAFPFVESPEAERIELTILGLKQHCALSVDEKITPLGSSLANLPVELPIGKMLLMG 596

Query: 644 SMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVK 703
            +F +++ +L+LAA+LSVQ+P T RA  D  CE  R+ LES+ GD  T+L AY+ WL +K
Sbjct: 597 CVFPEVEQLLTLAAMLSVQNPLTTRAHMDQRCERERQPLESDQGDLFTLLRAYRNWLQLK 656

Query: 704 KDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHG 763
                ++KWC R GIEEQRFYEV KLR QF+++L    +    P   + L+S ERA RHG
Sbjct: 657 MGLENTRKWCHRLGIEEQRFYEVCKLRHQFQRILETCRMAP--PTAASCLTSAERAQRHG 714

Query: 764 EIKLLQAIKRKKAEEAPKRRKMLK 787
           E++ L+ +KR++  E P++RK+LK
Sbjct: 715 ELRQLRGLKRRQRFEQPRQRKLLK 738



 Score =  168 bits (425), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/128 (57%), Positives = 106/128 (82%)

Query: 12  LLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQI 71
           L+  YLDFKQKEKF+ + K+R+ Q +LP+A++K+++  ++   RV+I+AGDTGCGKSTQ+
Sbjct: 123 LVLIYLDFKQKEKFNRIKKLRQAQRALPIARFKEDLRSSLDVSRVLIVAGDTGCGKSTQV 182

Query: 72  PQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFI 131
           PQ+L + G++ IACTQPRR+AC++LSKRVA+E L  Y + VG+QIRFE+++ + T I+FI
Sbjct: 183 PQFLYEFGYRSIACTQPRRLACVTLSKRVAHELLDDYGSKVGFQIRFERNKTQNTHILFI 242

Query: 132 TEGLLLRQ 139
           TEGLLLRQ
Sbjct: 243 TEGLLLRQ 250



 Score =  165 bits (418), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 146/264 (55%), Gaps = 43/264 (16%)

Query: 1191 HKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLR 1250
            H+DV +LK++L SG YPQ+AI DEFN  +   +  FH + K F+SLHP S F    ++L+
Sbjct: 786  HRDVMLLKLLLVSGFYPQLAIADEFNHCKGGGQQFFHTQLKPFLSLHPNSHFAKCYELLK 845

Query: 1251 ISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAI 1310
            +++ D+    P    P +  +S +HQLL Y SLLET+KP+L+NC+R+PA QTLLLF  AI
Sbjct: 846  LADSDL-HLKPSYYTP-KQPLSDRHQLLCYQSLLETAKPYLMNCIRLPAAQTLLLFGYAI 903

Query: 1311 HTNSDFTRLVFDSWIEVFVP--------------LQEAKST---ADVNQLEHS------- 1346
             TN   +R+V D W+ +  P              L++  S+   A +N+L +S       
Sbjct: 904  DTNLGVSRIVCDGWLGLDFPQPGSGLQLLSRAIELRQRWSSRLYAKLNELNNSKESATAG 963

Query: 1347 -------------LTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPG--SNP 1391
                         L  DL+ FM     +AYSIRRLL ADLK +Y R      +    +NP
Sbjct: 964  SAPSIALSDGSDTLWHDLLDFM--GLEVAYSIRRLLPADLKVLYTRCPPPERLEALPTNP 1021

Query: 1392 FVAEFPMVVEETLGGVRVTPYLVY 1415
            F A++P+      GG+ V+ ++VY
Sbjct: 1022 FAADYPLSANSEKGGLNVSEHVVY 1045



 Score =  131 bits (329), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 87/120 (72%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RL++++Q+     Y TPEI RV +D++LL +V MGL DVR FPF+E+P AE 
Sbjct: 494 RTGPGVCFRLFTQQQFDGFEAYPTPEINRVPLDTMLLQMVSMGLPDVRAFPFVESPEAER 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE ++  L QH A+   E++T LG  L++LPV++P+GKML+ G +F +++ +L L   L+
Sbjct: 554 IELTILGLKQHCALSVDEKITPLGSSLANLPVELPIGKMLLMGCVFPEVEQLLTLAAMLS 613



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 55/72 (76%), Gaps = 2/72 (2%)

Query: 1112 KQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELF 1171
            +Q+ VAA+  L  YDVL+LDEIHER+L GDFLLGV KCLL +  ++K+ILMSATIN+ELF
Sbjct: 249  RQLAVAAN--LEQYDVLILDEIHERNLFGDFLLGVTKCLLRAKPQLKLILMSATINVELF 306

Query: 1172 HTYFNRIAKDLL 1183
            H +F      LL
Sbjct: 307  HNFFKEEGARLL 318



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 55/79 (69%), Gaps = 2/79 (2%)

Query: 148 PGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERL 207
           P   + L+S ERA RHGE++ L+ +KR++  E P++RK+LK  +  +++E++ + +G+  
Sbjct: 698 PTAASCLTSAERAQRHGELRQLRGLKRRQRFEQPRQRKLLKQQHHDQLDEDDGQGDGD-- 755

Query: 208 ESMDANEVEFRLKHDPKQV 226
            S D  +V+FRL+HD +Q+
Sbjct: 756 PSEDIRDVDFRLRHDARQL 774



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 26/32 (81%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGV 258
           Q+A    L  YD+LILDE+HER+L+GDFLLGV
Sbjct: 250 QLAVAANLEQYDVLILDEIHERNLFGDFLLGV 281



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 34/48 (70%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            A+   E++T LG  L++LPV++P+GKML+ G +F +++ +L L   L+
Sbjct: 566  ALSVDEKITPLGSSLANLPVELPIGKMLLMGCVFPEVEQLLTLAAMLS 613



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 34/48 (70%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            A+   E++T LG  L++LPV++P+GKML+ G +F +++ +L L   L+
Sbjct: 566  ALSVDEKITPLGSSLANLPVELPIGKMLLMGCVFPEVEQLLTLAAMLS 613


>gi|190358610|ref|NP_001121805.1| probable ATP-dependent RNA helicase DHX34 [Danio rerio]
          Length = 1150

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 274/503 (54%), Positives = 361/503 (71%), Gaps = 4/503 (0%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  D  L  Y VL++DE+HERHLH DFLLGV++ LL    +++++LMSATINI+LF +Y
Sbjct: 263 QIQQDASLGQYQVLIVDEVHERHLHCDFLLGVLRSLLSLRPDLRLVLMSATINIKLFSSY 322

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIV-ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           FN  A +++VPGRL+PIQ+ Y PI  E   ++SEKLDP PY+R+L  ID++YP+ ERGD+
Sbjct: 323 FND-APVLQVPGRLFPIQVIYQPIPPEEQVSRSEKLDPRPYLRVLQGIDQRYPQEERGDL 381

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG++EIS+I  A Q Y   +Q WIVLPLHSTLSL +QD+VF  AP G+RKCI+STN
Sbjct: 382 LLFLSGVAEISTIQEACQTYATHTQRWIVLPLHSTLSLAQQDKVFDIAPPGVRKCIISTN 441

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDG+RFVVDSGKVKEMS+D  AKM  LQEFWIS+AS+EQRKGRAGRTGPGVCY
Sbjct: 442 IAETSVTIDGVRFVVDSGKVKEMSFDPKAKMQRLQEFWISRASSEQRKGRAGRTGPGVCY 501

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE  Y   A Y  PEI RV++DSL+L +  MGLGD R F F++ PPA +I+++V  L
Sbjct: 502 RLYSESDYDAFAPYPVPEIHRVALDSLILQMKSMGLGDPRTFTFIDPPPASSIQTAVTYL 561

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GA+D    +TS+GR L+ LPVD+ +GKMLV GS+F+ ++ VL++AA LSVQSPF   
Sbjct: 562 REQGALDEHGELTSIGRLLAQLPVDVVIGKMLVLGSVFNLVEPVLTVAAALSVQSPFLRS 621

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVT 727
           A  +PDC TAR+ L SNHGDP T++N +  W+ VK DR   S+KWC+RRG+EEQR YE+ 
Sbjct: 622 AQHNPDCSTARQPLNSNHGDPFTLMNTFNAWVQVKADRGSGSRKWCRRRGLEEQRLYEMV 681

Query: 728 KLRSQFKQVLGDSGLITDIPGPDASLSSRERAL-RHGEIKLLQAIKRKKAEEAPKRRKML 786
            LR QFK++L   GL+ D  G       R R   R  E + L  +KR    +   +RK+L
Sbjct: 682 NLRRQFKELLRSHGLLEDDTGRATEPQDRARRRERFTERQKLHQLKRDHELQENTKRKVL 741

Query: 787 KADNAYEIEEEEEEEEGERLESR 809
           + +   E +     +  E   SR
Sbjct: 742 RLEEGLEGDASSGSDAEESSTSR 764



 Score =  152 bits (384), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 102/130 (78%)

Query: 10  KLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKST 69
           +L L  +LDF QK+ FS L K+R  Q SLP+ QY+ +I++ V    VV++AGDTGCGKST
Sbjct: 134 RLALLHFLDFNQKQSFSKLSKLRREQKSLPIFQYRDKIVELVRTHPVVVVAGDTGCGKST 193

Query: 70  QIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           Q+PQYL+ +G   IACTQPRRIACISL+KRV++E+L+QY + VGYQIRFE  R   TK++
Sbjct: 194 QVPQYLLASGINNIACTQPRRIACISLAKRVSFESLNQYGSKVGYQIRFETSRTLATKLL 253

Query: 130 FITEGLLLRQ 139
           F+TEGLLLRQ
Sbjct: 254 FLTEGLLLRQ 263



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 86/120 (71%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLYSE  Y   A Y  PEI RV++DSL+L +  MGLGD R F F++ PPA +
Sbjct: 494 RTGPGVCYRLYSESDYDAFAPYPVPEIHRVALDSLILQMKSMGLGDPRTFTFIDPPPASS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           I+++V  L + GA+D    +T++GR L+ LPVD+ +GKMLV GS+F+ ++ +L +  AL+
Sbjct: 554 IQTAVTYLREQGALDEHGELTSIGRLLAQLPVDVVIGKMLVLGSVFNLVEPVLTVAAALS 613



 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 110/193 (56%), Gaps = 32/193 (16%)

Query: 1204 GLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGL 1263
            GLYPQ+AI DE N +    + +FH ++K  V +HP SVF S P+VL + E +  +     
Sbjct: 816  GLYPQLAIPDEHNATRKDSDQVFHTRNKQGVVIHPTSVFASDPEVLHVPEHETSE----- 870

Query: 1264 KLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDS 1323
                    S++HQLL +++LLET+KP+L NC+R+PALQ LLL ++++++N+D TRLV D 
Sbjct: 871  -----FGQSNRHQLLAFVTLLETNKPYLSNCVRVPALQALLLVANSVNSNADCTRLVVDG 925

Query: 1324 WIEVFVPLQEAKSTADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAE 1383
            W+E+ +   +A                 ++ +SSA  L     RLL A L    R++G+ 
Sbjct: 926  WLELSLTDGDAA----------------LKVLSSALSLRAEWERLLQAQL----RQSGSC 965

Query: 1384 S--GVPGSNPFVA 1394
            S  G   S P V+
Sbjct: 966  SSAGFGSSGPRVS 978



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D  L  Y VL++DE+HERHLH DFLLGV++ LL    +++++LMSATINI+LF +Y
Sbjct: 263  QIQQDASLGQYQVLIVDEVHERHLHCDFLLGVLRSLLSLRPDLRLVLMSATINIKLFSSY 322

Query: 1175 FN 1176
            FN
Sbjct: 323  FN 324



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 36/49 (73%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+D    +TS+GR L+ LPVD+ +GKMLV GS+F+ ++ +L +  AL+
Sbjct: 565  GALDEHGELTSIGRLLAQLPVDVVIGKMLVLGSVFNLVEPVLTVAAALS 613



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 36/49 (73%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+D    +TS+GR L+ LPVD+ +GKMLV GS+F+ ++ +L +  AL+
Sbjct: 565  GALDEHGELTSIGRLLAQLPVDVVIGKMLVLGSVFNLVEPVLTVAAALS 613



 Score = 47.8 bits (112), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  D  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQQDASLGQYQVLIVDEVHERHLHCDFLLGVL 295


>gi|402906083|ref|XP_003915836.1| PREDICTED: probable ATP-dependent RNA helicase DHX34 [Papio anubis]
          Length = 1143

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/505 (53%), Positives = 361/505 (71%), Gaps = 12/505 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  +  L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSY 322

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           F+  A +++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+
Sbjct: 323 FSN-APVVQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDL 381

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG++EIS+++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STN
Sbjct: 382 LVFLSGMAEISTVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTN 441

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+
Sbjct: 442 IAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCF 501

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  ++E+++  L
Sbjct: 502 RLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYL 561

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
              GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ VL++AA LSVQSPFT  
Sbjct: 562 RDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRS 621

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVT 727
           A   P+C  AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+RRGIEE R YE+ 
Sbjct: 622 AQSSPECAAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMA 681

Query: 728 KLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
            LR QFK++L D GL+T       +  S  R  +  E + L  +KR+  E A +RRK+L+
Sbjct: 682 NLRRQFKELLEDHGLMTGAQATQVA-DSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLR 740

Query: 788 ADNAYEIEEEEEEEEGERLESRTGP 812
                    +EE++ G   E R GP
Sbjct: 741 L--------QEEQDGGSSEEDRAGP 757



 Score =  173 bits (439), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 102/132 (77%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLTAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/270 (34%), Positives = 134/270 (49%), Gaps = 55/270 (20%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S + + +LK++L  GLYPQ+A+ D FN+S    + +FH + K    LHP  VF   P+VL
Sbjct: 793  SREQLALLKLVLGRGLYPQLAVPDAFNSSRKDSDQIFHTQAKQGAVLHPTCVFAGSPEVL 852

Query: 1250 RISEDDIVDPPPGLKLPG----RNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLL 1305
               E      P      G    ++ +SSKHQLL ++SLLET+KP+LVNC+R+PALQ+LLL
Sbjct: 853  HAQE------PEASSCDGSRDDKDKMSSKHQLLSFVSLLETNKPYLVNCVRIPALQSLLL 906

Query: 1306 FSSAIHTNSDFTRLVFDSWIEVFVPLQEAKSTADV------------------NQLEH-- 1345
            FS ++ TN D +RLV D W+E    LQ A S + V                   QL H  
Sbjct: 907  FSRSLDTNGDCSRLVADGWLE----LQLADSESAVRLLAASLRLRARWEGALDRQLAHQA 962

Query: 1346 -------------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGV 1386
                               +L+++L+QF  +A+ + YS+RRL   + + +Y         
Sbjct: 963  QRRLEEEEQDVPVSPKEVATLSKELLQF--TASKIPYSLRRLTGLEAQNLYVGPQTIPTT 1020

Query: 1387 PGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
            P          +    T GG  VT +L Y+
Sbjct: 1021 PHLPGLFGSSTLSPHPTKGGYAVTDFLTYN 1050



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 84/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 554 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+    F   ++ 
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  SPECAAARRPLES 637



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 46.6 bits (109), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|38158022|ref|NP_055496.2| probable ATP-dependent RNA helicase DHX34 [Homo sapiens]
 gi|311033371|sp|Q14147.2|DHX34_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DHX34; AltName:
           Full=DEAH box protein 34
 gi|225000146|gb|AAI72389.1| DEAH (Asp-Glu-Ala-His) box polypeptide 34 [synthetic construct]
          Length = 1143

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/499 (54%), Positives = 357/499 (71%), Gaps = 12/499 (2%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +YF+  A +
Sbjct: 270 LPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSYFSN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GSMF  ++ VL++AA LSVQSPFT  A   P+C
Sbjct: 569 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQSSPEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+RRGIEE R YE+  LR QFK
Sbjct: 629 AAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 794
           ++L D GL+           S  R  +  E + L  +KR+  E A +RRK+L+       
Sbjct: 689 ELLEDHGLLAGAQAAQVG-DSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLRL------ 741

Query: 795 EEEEEEEEGERLESRTGPG 813
             +EE++ G   E R GP 
Sbjct: 742 --QEEQDGGSSDEDRAGPA 758



 Score =  174 bits (440), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 102/132 (77%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 133/266 (50%), Gaps = 47/266 (17%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S + + +LK++L  GLYPQ+A+ D FN+S    + +FH + K    LHP  VF   P+VL
Sbjct: 793  SREQLALLKLVLGRGLYPQLAVPDAFNSSRKDSDQIFHTQAKQGAVLHPTCVFAGSPEVL 852

Query: 1250 RISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSA 1309
               E +  +         ++ +SSKHQLL ++SLLET+KP+LVNC+R+PALQ+LLLFS +
Sbjct: 853  HAQELEASNCDGSRD--DKDKMSSKHQLLSFVSLLETNKPYLVNCVRIPALQSLLLFSRS 910

Query: 1310 IHTNSDFTRLVFDSWIEVFVPLQEAKSTADVNQLEHS----------------------- 1346
            + TN D +RLV D W+E    LQ A S + +  L  S                       
Sbjct: 911  LDTNGDCSRLVADGWLE----LQLADSESAIRLLAASLRLRARWESALDRQLAHQAQQQL 966

Query: 1347 ----------------LTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGSN 1390
                            L+++L+QF  +A+ + YS+RRL   +++ MY         P   
Sbjct: 967  EEEEEDTPVSPKEVATLSKELLQF--TASKIPYSLRRLTGLEVQNMYVGPQTIPATPHLP 1024

Query: 1391 PFVAEFPMVVEETLGGVRVTPYLVYD 1416
                   +    T GG  VT +L Y+
Sbjct: 1025 GLFGSSTLSPHPTKGGYAVTDFLTYN 1050



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 84/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 554 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 49/62 (79%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+    F   ++ 
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  SPECAAARRPLES 637



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|410214164|gb|JAA04301.1| DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Pan troglodytes]
 gi|410300272|gb|JAA28736.1| DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Pan troglodytes]
          Length = 1143

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/499 (54%), Positives = 357/499 (71%), Gaps = 12/499 (2%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +YF+  A +
Sbjct: 270 LPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSYFSN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GSMF  ++ VL++AA LSVQSPFT  A   P+C
Sbjct: 569 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQSSPEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+RRGIEE R YE+  LR QFK
Sbjct: 629 AAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 794
           ++L D GL+           S  R  +  E + L  +KR+  E A +RRK+L+       
Sbjct: 689 ELLEDHGLLAGAQAAPVG-DSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLRL------ 741

Query: 795 EEEEEEEEGERLESRTGPG 813
             +EE++ G   E R GP 
Sbjct: 742 --QEEQDGGSSDEDRAGPA 758



 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 102/132 (77%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 134/268 (50%), Gaps = 51/268 (19%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S + + +LK++L  GLYPQ+A+ D FN+S    + +FH + K    LHP  VF   P+VL
Sbjct: 793  SREQLALLKLVLGRGLYPQLAVPDAFNSSRKDSDQIFHTQAKQGAVLHPTCVFAGIPEVL 852

Query: 1250 RISE------DDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTL 1303
               E      D   D         ++ +SSKHQLL ++SLLET+KP+LVNC+R+PALQ+L
Sbjct: 853  HAQELEASNCDGSRD--------DKDKMSSKHQLLSFVSLLETNKPYLVNCVRIPALQSL 904

Query: 1304 LLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAK--------------STADVNQLEH---- 1345
            LLFS ++ TN D +RLV D W+E+ +   E+                +A   QL H    
Sbjct: 905  LLFSRSLDTNGDCSRLVADGWLELQLADSESAIRLLAASLRLRARWESALDRQLAHQAQR 964

Query: 1346 -----------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPG 1388
                             +L+++L+QF  +A+ + YS+RRL   + + MY         P 
Sbjct: 965  QLEEEEQDTPVSPKEVATLSKELLQF--TASKIPYSLRRLTGLEAQNMYVGPQTIPATPH 1022

Query: 1389 SNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
                     +    T GG  VT +L Y+
Sbjct: 1023 LPGLFGSSTLSPHPTKGGYAVTDFLTYN 1050



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 84/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 554 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 80.1 bits (196), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 49/62 (79%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+    F   ++ 
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  SPECAAARRPLES 637



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 46.6 bits (109), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|355703705|gb|EHH30196.1| hypothetical protein EGK_10812 [Macaca mulatta]
          Length = 1143

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/498 (54%), Positives = 357/498 (71%), Gaps = 12/498 (2%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF+  A +
Sbjct: 270 LPQYEVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSYFSN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++ A Q Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISTVLEAVQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GSMF  ++ VL++AA LSVQSPFT  A   P+C
Sbjct: 569 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQSSPEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+RRGIEE R YE+  LR QFK
Sbjct: 629 AAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 794
           ++L D GL+T       +  S  R  +  E + L  +KR+  E A +RRK+L+       
Sbjct: 689 ELLEDHGLMTGAQATQVA-DSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLRL------ 741

Query: 795 EEEEEEEEGERLESRTGP 812
             +EE++ G   E R GP
Sbjct: 742 --QEEQDGGSSEEDRAGP 757



 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 102/132 (77%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLTAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  140 bits (352), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/270 (34%), Positives = 134/270 (49%), Gaps = 55/270 (20%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S + + +LK++L  GLYPQ+A+ D FN+S    + +FH + K    LHP  VF   P+VL
Sbjct: 793  SREQLALLKLVLGRGLYPQLAVPDAFNSSRKDSDQIFHTQAKQGAVLHPTCVFAGSPEVL 852

Query: 1250 RISEDDIVDPPPGLKLPG----RNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLL 1305
               E      P      G    ++ +SSKHQLL ++SLLET+KP+LVNC+R+PALQ+LLL
Sbjct: 853  HAQE------PEASSCDGSRDDKDKMSSKHQLLSFVSLLETNKPYLVNCVRIPALQSLLL 906

Query: 1306 FSSAIHTNSDFTRLVFDSWIEVFVPLQEAKSTADV------------------NQLEH-- 1345
            FS ++ TN D +RLV D W+E    LQ A S + V                   QL H  
Sbjct: 907  FSRSLDTNGDCSRLVADGWLE----LQLADSESAVRLLAASLRLRARWEGALDRQLAHQA 962

Query: 1346 -------------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGV 1386
                               +L+++L+QF  +A+ + YS+RRL   + + +Y         
Sbjct: 963  QRRLEEEEQDVPVSPKEVATLSKELLQF--TASKIPYSLRRLTGLEAQNLYVGPQTIPAT 1020

Query: 1387 PGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
            P          +    T GG  VT +L Y+
Sbjct: 1021 PHLPGLFGSSTLSPHPTKGGYAVTDFLTYN 1050



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 84/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 554 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+    F   ++ 
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  SPECAAARRPLES 637



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 46.6 bits (109), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|194762998|ref|XP_001963621.1| GF20192 [Drosophila ananassae]
 gi|190629280|gb|EDV44697.1| GF20192 [Drosophila ananassae]
          Length = 1135

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 267/494 (54%), Positives = 365/494 (73%), Gaps = 16/494 (3%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++A    L  YD L+LDEIHER+L GDFLLGV KCLL +  ++K+ILMSATIN++LFH Y
Sbjct: 234 QLAVGANLDQYDALILDEIHERNLFGDFLLGVTKCLLRARPKLKLILMSATINVQLFHNY 293

Query: 370 FNR-IAKIIKVPGRLYPIQLEYHP----------IVELDRTKSEKLDPGPYIRILSIIDK 418
           F    A++++VPGRL+PI+L Y P           V   + +S ++DP P++++LS+ID+
Sbjct: 294 FKEEGARLVQVPGRLFPIKLRYIPPPALELKAGQSVSTSKHQSGRMDPAPFVQVLSLIDQ 353

Query: 419 KYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
           +YP +ERGDVLIF+SG++EI S+V A +EY  K Q WIVLPLHS L+L EQD+VF YAPE
Sbjct: 354 QYPISERGDVLIFVSGVNEIESVVAAVEEYATKQQHWIVLPLHSGLALAEQDKVFDYAPE 413

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
           G RKCIVSTNIAETS+T+DG+RFVVDSGKVKEMSYD   K   L+EFW+SK+SAEQRKGR
Sbjct: 414 GSRKCIVSTNIAETSLTVDGVRFVVDSGKVKEMSYDAACKGQRLKEFWVSKSSAEQRKGR 473

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
           AGRTGPGVC+RLYS+ Q+     Y  PEI R+ +D++LL ++ MGL DVR FPF+EAP +
Sbjct: 474 AGRTGPGVCFRLYSQAQFDAFEPYPAPEIHRMPLDTMLLQMISMGLPDVRVFPFIEAPKS 533

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
           E +E ++ +L QH A+  +E++T LG  L++LPV++ +GKML+ G +F +++ +L+LAA+
Sbjct: 534 EQVEQTILALKQHCALSVEEKITPLGSSLANLPVELSIGKMLLMGCVFPEVEQLLTLAAM 593

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGI 718
           LSVQ+P T RA  D  CE  R+  ES+ GD  T+L  ++EWL +K  R  +++WC R GI
Sbjct: 594 LSVQNPLTTRAQTDHRCERERQPFESDQGDLFTMLRCFREWLQLKLRREGTRQWCHRLGI 653

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLIT-----DIPGPDASLSSRERALRHGEIKLLQAIKR 773
           EEQRFYEVTKLR QF+++L   G+         PG  + L+S ER+ RHGE+  L+A+KR
Sbjct: 654 EEQRFYEVTKLRHQFQRILESCGMTVASDSGSGPGSSSQLTSAERSTRHGELIQLKALKR 713

Query: 774 KKAEEAPKRRKMLK 787
           ++  E P++RK+LK
Sbjct: 714 RQRFEQPRQRKLLK 727



 Score =  169 bits (429), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 104/132 (78%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           +++ L+  YLDF+QKEKF  + K+R+ Q SLP+A+++ ++ + +   RVVI+AGDTGCGK
Sbjct: 103 QFRQLILIYLDFRQKEKFQRIRKLRQAQRSLPIARFRDDLREALDTSRVVIVAGDTGCGK 162

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQ+L   G++ IACTQPRR+AC+SLSKRVA+E L  Y + VG+QIRFE+ R + T 
Sbjct: 163 STQVPQFLYDFGYRSIACTQPRRLACVSLSKRVAHELLDDYGSRVGFQIRFERSRTQHTS 222

Query: 128 IVFITEGLLLRQ 139
           I FITEGLLLRQ
Sbjct: 223 ITFITEGLLLRQ 234



 Score =  151 bits (381), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/259 (35%), Positives = 133/259 (51%), Gaps = 40/259 (15%)

Query: 1191 HKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLR 1250
            H+DV +LK+++ASG YPQ+A+ DEFN  +   +  FH + K F+S HP S F        
Sbjct: 771  HRDVVLLKLLIASGFYPQLAVVDEFNYCKGGGQQFFHTRLKPFLSQHPNSHFAKY--FDL 828

Query: 1251 ISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAI 1310
            +   D    P       ++ +SS+HQ+L Y SLLET+KP+L+NC+R+P  QTLLLF  AI
Sbjct: 829  LQLSDSDLLPKPFYYTAKHPLSSRHQILCYQSLLETAKPYLMNCIRLPCAQTLLLFGFAI 888

Query: 1311 HTNSDFTRLVFDSWIEVFVPL--------------------------------QEAKSTA 1338
             TN+  T++V D W+ + +P                                 Q+A S+A
Sbjct: 889  DTNAGLTQIVCDGWLGIDLPAPGSGMQLLSRGIELRRRWSGQLYAKLNELSDKQDAPSSA 948

Query: 1339 DVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPG--SNPFVAEF 1396
                +   L  DL+ FM  A  +AY++RRLL ADLK +Y        +     NPF   +
Sbjct: 949  --RSVSSDLWHDLLDFM--ALDVAYAVRRLLPADLKRLYTHQAPPERIRDLKENPFAPGY 1004

Query: 1397 PMVVEETLGGVRVTPYLVY 1415
             M   E  GG+ V+ ++VY
Sbjct: 1005 AMSANEEKGGINVSEHVVY 1023



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 86/120 (71%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLYS+ Q+     Y  PEI R+ +D++LL ++ MGL DVR FPF+EAP +E 
Sbjct: 476 RTGPGVCFRLYSQAQFDAFEPYPAPEIHRMPLDTMLLQMISMGLPDVRVFPFIEAPKSEQ 535

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E ++ +L QH A+  +E++T LG  L++LPV++ +GKML+ G +F +++ +L L   L+
Sbjct: 536 VEQTILALKQHCALSVEEKITPLGSSLANLPVELSIGKMLLMGCVFPEVEQLLTLAAMLS 595



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 48/62 (77%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+A    L  YD L+LDEIHER+L GDFLLGV KCLL +  ++K+ILMSATIN++LFH Y
Sbjct: 234  QLAVGANLDQYDALILDEIHERNLFGDFLLGVTKCLLRARPKLKLILMSATINVQLFHNY 293

Query: 1175 FN 1176
            F 
Sbjct: 294  FK 295



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 6/73 (8%)

Query: 154 LSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDAN 213
           L+S ER+ RHGE+  L+A+KR++  E P++RK+LK       +  + E++G      D  
Sbjct: 693 LTSAERSTRHGELIQLKALKRRQRFEQPRQRKLLKH------QHRDTEDQGHDERDDDMR 746

Query: 214 EVEFRLKHDPKQV 226
           +V+ R++HD +Q+
Sbjct: 747 DVDLRMRHDARQL 759



 Score = 47.8 bits (112), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGV 258
           Q+A    L  YD LILDE+HER+L+GDFLLGV
Sbjct: 234 QLAVGANLDQYDALILDEIHERNLFGDFLLGV 265



 Score = 42.4 bits (98), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 34/48 (70%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            A+  +E++T LG  L++LPV++ +GKML+ G +F +++ +L L   L+
Sbjct: 548  ALSVEEKITPLGSSLANLPVELSIGKMLLMGCVFPEVEQLLTLAAMLS 595



 Score = 42.4 bits (98), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 34/48 (70%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            A+  +E++T LG  L++LPV++ +GKML+ G +F +++ +L L   L+
Sbjct: 548  ALSVEEKITPLGSSLANLPVELSIGKMLLMGCVFPEVEQLLTLAAMLS 595


>gi|114678066|ref|XP_001169079.1| PREDICTED: probable ATP-dependent RNA helicase DHX34 isoform 3 [Pan
           troglodytes]
 gi|410251890|gb|JAA13912.1| DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Pan troglodytes]
 gi|410336069|gb|JAA36981.1| DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Pan troglodytes]
          Length = 1143

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/499 (54%), Positives = 357/499 (71%), Gaps = 12/499 (2%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +YF+  A +
Sbjct: 270 LPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSYFSN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GSMF  ++ VL++AA LSVQSPFT  A   P+C
Sbjct: 569 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQSSPEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+RRGIEE R YE+  LR QFK
Sbjct: 629 AAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 794
           ++L D GL+           S  R  +  E + L  +KR+  E A +RRK+L+       
Sbjct: 689 ELLEDHGLLAGAQAAPVG-DSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLRL------ 741

Query: 795 EEEEEEEEGERLESRTGPG 813
             +EE++ G   E R GP 
Sbjct: 742 --QEEQDGGSSDEDRAGPA 758



 Score =  174 bits (440), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 102/132 (77%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/272 (33%), Positives = 132/272 (48%), Gaps = 59/272 (21%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S + + +LK++L  GLYPQ+A+ D FN+S    + +FH + K    LHP  VF   P+VL
Sbjct: 793  SREQLALLKLVLGRGLYPQLAVPDAFNSSRKDSDQIFHTQAKQGAVLHPTCVFAGIPEVL 852

Query: 1250 RISE------DDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTL 1303
               E      D   D         ++ +SSKHQLL ++SLLET+KP+LVNC+R+PALQ+L
Sbjct: 853  HAQELEASNCDGSRD--------DKDKMSSKHQLLSFVSLLETNKPYLVNCVRIPALQSL 904

Query: 1304 LLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAKSTADVNQLEHS----------------- 1346
            LLFS ++ TN D +RLV D W+E    LQ A S + +  L  S                 
Sbjct: 905  LLFSRSLDTNGDCSRLVADGWLE----LQLADSESAIRLLAASLRLRARWESALDRQLAH 960

Query: 1347 ----------------------LTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAES 1384
                                  L+++L+QF  +A+ + YS+RRL   + + MY       
Sbjct: 961  QAQQQLEEEEQDTPVSPKEVATLSKELLQF--TASKIPYSLRRLTGLEAQNMYVGPQTIP 1018

Query: 1385 GVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
              P          +    T GG  VT +L Y+
Sbjct: 1019 ATPHLPGLFGSSTLSPHPTKGGYAVTDFLTYN 1050



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 84/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 554 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 80.1 bits (196), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 49/62 (79%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+    F   ++ 
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  SPECAAARRPLES 637



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 46.6 bits (109), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|380791715|gb|AFE67733.1| putative ATP-dependent RNA helicase DHX34, partial [Macaca mulatta]
          Length = 774

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/498 (54%), Positives = 357/498 (71%), Gaps = 12/498 (2%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF+  A +
Sbjct: 270 LPQYEVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSYFSN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPQPFLRVLESIDHKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++ A Q Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISTVLEAVQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GSMF  ++ VL++AA LSVQSPFT  A   P+C
Sbjct: 569 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQSSPEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+RRGIEE R YE+  LR QFK
Sbjct: 629 AAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 794
           ++L D GL+T       +  S  R  +  E + L  +KR+  E A +RRK+L+       
Sbjct: 689 ELLEDHGLMTGAQATQVA-DSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLRL------ 741

Query: 795 EEEEEEEEGERLESRTGP 812
             +EE++ G   E R GP
Sbjct: 742 --QEEQDGGSSEEDRAGP 757



 Score =  173 bits (438), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 102/132 (77%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLTAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  133 bits (334), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 84/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 554 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+    F   ++ 
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  SPECAAARRPLES 637



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 46.6 bits (109), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|296234217|ref|XP_002762250.1| PREDICTED: probable ATP-dependent RNA helicase DHX34 [Callithrix
           jacchus]
          Length = 1163

 Score =  554 bits (1428), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/506 (53%), Positives = 357/506 (70%), Gaps = 12/506 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  +  L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSY 322

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           F   A +++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+
Sbjct: 323 FGN-APVVQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDL 381

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG++EIS+++ AAQ Y   +Q W+VLPLHS LS+  QD+VF  AP G+RKCI+STN
Sbjct: 382 LVFLSGMAEISTVLEAAQTYASHTQRWVVLPLHSALSVAAQDKVFDVAPPGVRKCILSTN 441

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDGIRFVVDSGKVKEMSYD  A +  LQEFWIS+ASAEQRKGRAGRTGPGVC+
Sbjct: 442 IAETSVTIDGIRFVVDSGKVKEMSYDPQAHLQRLQEFWISQASAEQRKGRAGRTGPGVCF 501

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  ++E+++  L
Sbjct: 502 RLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSMGDPRTFPFIEPPPPASLETAILYL 561

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
              GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ VL++AA LSVQSPFT  
Sbjct: 562 RDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRS 621

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVT 727
           A   P+C  AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+RRGIEE R YE+ 
Sbjct: 622 AQSSPECAAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMA 681

Query: 728 KLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
            LR QFK++L D GL+       A   S  R  +  E + L  +KR+  E A +RRK+L+
Sbjct: 682 NLRRQFKELLEDHGLLAGAQAVQAG-DSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLR 740

Query: 788 ADNAYEIEEEEEEEEGERLESRTGPG 813
                    +EE++ G   E R GP 
Sbjct: 741 L--------QEEQDGGSSDEDRAGPA 758



 Score =  173 bits (438), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 102/132 (77%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY   ++ T+ + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRVLQTLKEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  137 bits (344), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/276 (35%), Positives = 138/276 (50%), Gaps = 67/276 (24%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S + + +LK++L  GLYPQ+A+ D FN+S    + +FH + K    LHP  VF   P+VL
Sbjct: 793  SREQLALLKLVLGRGLYPQLAVPDAFNSSRKDSDQIFHTQAKQGAVLHPTCVFAGSPEVL 852

Query: 1250 RISEDDIVDPPPGLKLPGRN--VISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFS 1307
             I E     P  G     R+   +SSK+QLL ++SLLET+KP+LVNC+R+PALQ+LLLFS
Sbjct: 853  HIRE-----PEAGSCDGSRDDQKMSSKYQLLSFVSLLETNKPYLVNCVRIPALQSLLLFS 907

Query: 1308 SAIHTNSDFTRLVFDSWIEVFVPLQEAKSTADV------------------NQLEHS--- 1346
             ++ TN D TRLV D W+E    LQ A S + V                   QL H    
Sbjct: 908  RSLDTNGDCTRLVADGWLE----LQLADSESAVRLLAASLRLRARWESALDRQLVHQARQ 963

Query: 1347 -------------------LTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVP 1387
                               L+++L+QF  +A+ L YS+RRL   + + +Y   G     P
Sbjct: 964  RLEEEEEEEEPVSPKEVVVLSKELLQF--TASKLPYSLRRLTGLEAQNLY--VG-----P 1014

Query: 1388 GSNPFVAEFP-------MVVEETLGGVRVTPYLVYD 1416
             + P     P       +    T GG  VT +L Y+
Sbjct: 1015 QTIPVTPHLPGLFGSSTLSPHPTKGGYAVTDFLTYN 1050



 Score =  133 bits (334), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 84/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSMGDPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 554 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F 
Sbjct: 323  FG 324



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+    F   ++ 
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  SPECAAARRPLES 637



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 47.0 bits (110), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|321469466|gb|EFX80446.1| hypothetical protein DAPPUDRAFT_304131 [Daphnia pulex]
          Length = 865

 Score =  554 bits (1428), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/451 (58%), Positives = 360/451 (79%), Gaps = 8/451 (1%)

Query: 342 IKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDR-TK 400
           +KCL+ S  ++K+ILMSATINI LF  YF   A +I+VPGRL+PIQ++Y PIV  +R TK
Sbjct: 1   MKCLVQSRKDLKLILMSATINIGLFQQYFQGQAPVIQVPGRLFPIQVQYLPIVPEERVTK 60

Query: 401 SEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPL 460
           + K++P PY+RIL +ID KY   ERGD+L+F+SG++EI+S+    +EY +++Q WIVLPL
Sbjct: 61  TGKMNPSPYLRILQLIDGKYKVEERGDLLMFLSGLNEITSVEEVVKEYAQQNQRWIVLPL 120

Query: 461 HSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMS 520
           HSTLS+ EQD+VF Y PEG+RKCI++TNIAETSIT+DG+RFVVDSGKVKEMS+D  +K+ 
Sbjct: 121 HSTLSIAEQDKVFDYPPEGVRKCIIATNIAETSITLDGVRFVVDSGKVKEMSHDPISKLQ 180

Query: 521 TLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLV 580
            LQEFWIS+ASAEQRKGRAGRTGPGVC+RLYSE++Y   A Y+TPEI+RV +DS++L ++
Sbjct: 181 RLQEFWISRASAEQRKGRAGRTGPGVCFRLYSEKEYGDFAAYATPEIQRVPLDSMILQMI 240

Query: 581 CMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKML 640
            MGL D R FPF+E P  + +E+S+ +L +  A+   E++T++G+ L+ LPVDI LGKML
Sbjct: 241 SMGLPDARLFPFIEPPSGDAVENSITTLKEKEALTIDEKLTTIGKCLAGLPVDITLGKML 300

Query: 641 VFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWL 700
           + GS+F Q++ VL+LAA LSVQ+PFTNRA+RD DCE+ARKEL+S+HGDPLT+LNAYK WL
Sbjct: 301 LMGSIFGQVEAVLALAAALSVQTPFTNRAYRDTDCESARKELDSDHGDPLTLLNAYKAWL 360

Query: 701 GVKKDRV--RSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDA--SLSSR 756
            +K       S+KWCK+RG+EEQRFYE+TKLR QF+ +L D+GL   +PG D+  + SS 
Sbjct: 361 EIKAGNQGHTSRKWCKKRGLEEQRFYEMTKLRQQFRHILSDAGL---LPGQDSKQNTSSS 417

Query: 757 ERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
           +RA+RHG+++ L+++KR       ++RK+LK
Sbjct: 418 QRAVRHGQLQHLRSLKRDFIRSGQRKRKVLK 448



 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/279 (42%), Positives = 159/279 (56%), Gaps = 48/279 (17%)

Query: 1180 KDLLSG--STARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLH 1237
            + LLSG  S A SH+D+ +LK+ILASGL PQVA+ DEFN  ++  + LFH + K F +LH
Sbjct: 494  RSLLSGVTSAATSHQDLMLLKLILASGLSPQVALADEFNNYKSTSDQLFHTRAKPFTALH 553

Query: 1238 PFSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRM 1297
            P  VF + P+ L++ E DI+  P     P +  +SSKHQ+L+Y++LLET+K +L+N  RM
Sbjct: 554  PMGVFANHPEPLQLLEQDIIQVP---DFPTKLPVSSKHQVLMYVTLLETNKLYLMNAFRM 610

Query: 1298 PALQTLLLFSSAIHTNSDFTRLVFDSWIEV-FVPLQEAKS-------------------- 1336
            PA QTLLLFS +I TN DF RLV DSW+E+ FV    A+S                    
Sbjct: 611  PAAQTLLLFSQSIDTNGDFARLVCDSWLELHFVDAAVAQSLLLKACQLRYRWNDLLMLRL 670

Query: 1337 -------TADVNQLEHSLTR-------DLVQFMSSATHLAYSIRRLLAADLKTMYRRTGA 1382
                     DV +LE  + R       DL+ F  + T + Y+I+RLLAADLK +YR    
Sbjct: 671  DPNRPLKEKDVQKLEQKMKRMQRDLHYDLIAF--TQTQILYTIKRLLAADLKVIYRGHAL 728

Query: 1383 ESGVPGS------NPFVAEFPMVVEETLGGVRVTPYLVY 1415
            ES  P        NPF  EF  V     GG+++  +LVY
Sbjct: 729  ESETPNEEMRNEINPFWPEFQAVAHPRKGGLQMADFLVY 767



 Score =  131 bits (329), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 84/111 (75%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPGVC+RLYSE++Y   A Y+TPEI+RV +DS++L ++ MGL D R FPF+E P  +
Sbjct: 200 GRTGPGVCFRLYSEKEYGDFAAYATPEIQRVPLDSMILQMISMGLPDARLFPFIEPPSGD 259

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQID 918
            +E+S+ +L +  A+   E++TT+G+ L+ LPVDI LGKML+ GS+F Q++
Sbjct: 260 AVENSITTLKEKEALTIDEKLTTIGKCLAGLPVDITLGKMLLMGSIFGQVE 310



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 16/116 (13%)

Query: 140 DSGLITDIPGPDA--SLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--ADNAYEI 195
           D+GL+   PG D+  + SS +RA+RHG+++ L+++KR       ++RK+LK   D     
Sbjct: 401 DAGLL---PGQDSKQNTSSSQRAVRHGQLQHLRSLKRDFIRSGQRKRKVLKLGEDIEDMD 457

Query: 196 EEEEEEEEGERLE-----SMDANEVEFRLKHDPKQVQV----ATDNFLSSYDILIL 242
           ++++++E GE+ E      +D  +VEFRL+HD   V+      T    S  D+++L
Sbjct: 458 DDDDDDENGEQAEMPTGGQIDIKDVEFRLQHDQSTVRSLLSGVTSAATSHQDLMLL 513



 Score = 45.1 bits (105), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 30/38 (78%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQID 1018
            A+   E++T++G+ L+ LPVDI LGKML+ GS+F Q++
Sbjct: 273  ALTIDEKLTTIGKCLAGLPVDITLGKMLLMGSIFGQVE 310



 Score = 45.1 bits (105), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 30/38 (78%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQID 1068
            A+   E++T++G+ L+ LPVDI LGKML+ GS+F Q++
Sbjct: 273  ALTIDEKLTTIGKCLAGLPVDITLGKMLLMGSIFGQVE 310



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 1147 IKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            +KCL+ S  ++K+ILMSATINI LF  YF 
Sbjct: 1    MKCLVQSRKDLKLILMSATINIGLFQQYFQ 30


>gi|345784872|ref|XP_541537.3| PREDICTED: probable ATP-dependent RNA helicase DHX34 [Canis lupus
           familiaris]
          Length = 1139

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/473 (55%), Positives = 345/473 (72%), Gaps = 4/473 (0%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF   A +
Sbjct: 269 LPQYQVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSYFG-TAPV 327

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDPGP++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 328 VQVPGRLFPITVVYQPQEAEPVASKSEKLDPGPFLRVLEAIDNKYPPEERGDLLVFLSGM 387

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EISS++ AAQ Y  ++Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 388 AEISSVLEAAQTYASRTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 447

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEM YD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 448 IDGIRFVVDSGKVKEMGYDPQAKLHRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 507

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 508 YDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLQDQGALD 567

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GSMFH  + VL++AA LSVQSPFT  A  +P+C
Sbjct: 568 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQSPFTRSAQSNPEC 627

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+ RGIEE R YE+  LR QFK
Sbjct: 628 AAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRHRGIEEHRLYEMANLRRQFK 687

Query: 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
           ++L D GL+     P     S  R  +  E + L  +KR+  E   +RRK+L+
Sbjct: 688 ELLEDHGLLARAQAPTPG-DSYHRLQQRRERRALYRLKRQHEEGGGRRRKVLR 739



 Score =  174 bits (442), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 104/137 (75%)

Query: 3   PALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGD 62
           P    E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++AGD
Sbjct: 126 PERVTEFRRALLHYLDFSQKQAFGRLAKLQHERAALPIAQYGNRILQTLKEHQVVVVAGD 185

Query: 63  TGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR 122
           TGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV++E+LSQY + VGYQIRFE  R
Sbjct: 186 TGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVSFESLSQYGSQVGYQIRFESTR 245

Query: 123 REKTKIVFITEGLLLRQ 139
              TKIVF+T GLLLRQ
Sbjct: 246 TAATKIVFLTVGLLLRQ 262



 Score =  143 bits (361), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 145/284 (51%), Gaps = 50/284 (17%)

Query: 1177 RIAKDLLSGSTARSHKDVT-----ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDK 1231
            R + D L  +T+ S +D+T     +LK++L  GLYPQ+A+ D FN+S    + +FH + K
Sbjct: 769  RHSLDQLQAATS-SAQDLTRDQMALLKLVLGRGLYPQLAVPDPFNSSRKDSDQIFHTQSK 827

Query: 1232 GFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFL 1291
                LHP  +F + P+VL   E +            ++ +SSKHQLL ++SLLET+KP+L
Sbjct: 828  QGTVLHPTCIFANSPEVLHAQEQEARGSEGSQD--DKDKMSSKHQLLTFVSLLETNKPYL 885

Query: 1292 VNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSWIEV------------------------ 1327
            VNC+R+PALQ+LLLFS ++ TN D +RLV D W+E+                        
Sbjct: 886  VNCVRIPALQSLLLFSRSLDTNGDCSRLVADGWLELQLADSESAVRLLAASVRLRAHWES 945

Query: 1328 ---------------FVPLQEAKSTADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAAD 1372
                            V  +E ++  D  ++ H L+RDL+QF+  A+ + YS+RRL   +
Sbjct: 946  TLDQQLARQARRRGPGVDQEEEEAPVDPKEVAH-LSRDLLQFV--ASKVPYSLRRLTGLE 1002

Query: 1373 LKTMYRRTGAESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
            ++ +Y      +  P          +    T GG  VT +L Y+
Sbjct: 1003 VQNLYVGPQTITAAPSLPGLFGSSALSPHPTKGGYAVTDFLTYN 1046



 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 84/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  +
Sbjct: 493 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPAS 552

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + +L +  AL+
Sbjct: 553 LETAILYLQDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALS 612



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 46/62 (74%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 262  QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSY 321

Query: 1175 FN 1176
            F 
Sbjct: 322  FG 323



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + +L +  AL+    F   ++ 
Sbjct: 564  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQSPFTRSAQS 623

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 624  NPECAAARRPLES 636



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + +L +  AL+
Sbjct: 564  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALS 612



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 262 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 294


>gi|403299114|ref|XP_003940336.1| PREDICTED: probable ATP-dependent RNA helicase DHX34 [Saimiri
           boliviensis boliviensis]
          Length = 1141

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 270/506 (53%), Positives = 357/506 (70%), Gaps = 12/506 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  +  L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSY 322

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           F   A +++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+
Sbjct: 323 FGN-APVVQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDL 381

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG++EIS+++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STN
Sbjct: 382 LVFLSGMAEISAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTN 441

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDGIRFVVDSGKVKEMSYD  A +  LQEFWIS+ASAEQRKGRAGRTGPGVC+
Sbjct: 442 IAETSVTIDGIRFVVDSGKVKEMSYDPQAHLQRLQEFWISQASAEQRKGRAGRTGPGVCF 501

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  ++E+++  L
Sbjct: 502 RLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYL 561

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
              GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + VL++AA LSVQSPFT  
Sbjct: 562 RDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRS 621

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVT 727
           A   P+C  AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+RRG+EE R YE+ 
Sbjct: 622 AQSSPECAAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGVEEHRLYEMA 681

Query: 728 KLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
            LR QFK++L D GL+       A   S  R  +  E + L  +KR+  E A +RRK+L+
Sbjct: 682 NLRRQFKELLEDHGLLAGAQAMQAG-DSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLR 740

Query: 788 ADNAYEIEEEEEEEEGERLESRTGPG 813
                    +EE++ G   E R GP 
Sbjct: 741 L--------QEEQDGGSSDEDRAGPA 758



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 102/132 (77%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+  + + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQMLKEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV++E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVSFESLSQYGSQVGYQIRFESTRSAATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  143 bits (360), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 99/278 (35%), Positives = 144/278 (51%), Gaps = 59/278 (21%)

Query: 1184 SGSTAR--SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSV 1241
            S S+AR  S + + +LK++L  GLYPQ+A+ D FN+S    + +FH + K    LHP  V
Sbjct: 785  SASSARDLSREQLALLKLVLGRGLYPQLAVPDAFNSSRKDSDQIFHTQAKQGAVLHPTCV 844

Query: 1242 FTSQPDVLRISEDDIVDPPPGLKLPGRN--VISSKHQLLVYMSLLETSKPFLVNCLRMPA 1299
            F   P+VL+  E     P  G     R+   +SSKHQLL ++SLLET+KP+LVNC+R+PA
Sbjct: 845  FAGSPEVLQARE-----PEAGSCDGSRDDQKMSSKHQLLSFVSLLETNKPYLVNCVRIPA 899

Query: 1300 LQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAK--------------STADVNQLEH 1345
            LQ+LLLFS ++ TN D TRLV D W+E+ +   E+                +A   QL H
Sbjct: 900  LQSLLLFSRSLDTNGDCTRLVADGWLELQLADSESAIRLLAASLRLRARWESALDRQLAH 959

Query: 1346 --------------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESG 1385
                                +L+++L+QF  +A+ L YS+RRL   + + +Y   G    
Sbjct: 960  QARQRLEEEEEEPVSPKEVAALSKELLQF--TASKLPYSLRRLTGLEAQNLY--VG---- 1011

Query: 1386 VPGSNPFVAEFPMVV-------EETLGGVRVTPYLVYD 1416
             P + P     P +          T GG  VT +L Y+
Sbjct: 1012 -PQTIPVTPHLPGIFGSSTLSPHPTKGGYAVTDFLTYN 1048



 Score =  131 bits (329), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 83/120 (69%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 554 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 613



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F 
Sbjct: 323  FG 324



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+    F   ++ 
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  SPECAAARRPLES 637



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 613



 Score = 47.0 bits (110), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|148540198|ref|NP_082159.3| probable ATP-dependent RNA helicase DHX34 [Mus musculus]
 gi|12836128|dbj|BAB23515.1| unnamed protein product [Mus musculus]
          Length = 1145

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/559 (51%), Positives = 382/559 (68%), Gaps = 18/559 (3%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF+  A +
Sbjct: 272 LPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSH-APV 330

Query: 377 IKVPGRLYPIQLEYHPIVELDRT--KSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
           ++VPGRL+PI + Y P  E D+T  KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG
Sbjct: 331 VQVPGRLFPITVVYQP-QEADQTASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSG 389

Query: 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494
           ++EI++++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+
Sbjct: 390 MAEITTVLDAAQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSV 449

Query: 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554
           TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVCYRLY+E 
Sbjct: 450 TIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAES 509

Query: 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAI 614
            Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L + GA+
Sbjct: 510 DYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASVETAILYLQEQGAL 569

Query: 615 DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPD 674
           DS E +T +G  L+ LPVD+ +GKML+ GSMF   + VL++AA LSVQSPFT  A  + D
Sbjct: 570 DSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLD 629

Query: 675 CETARKELESNHGDPLTVLNAYKEWLGVKKDRV-RSKKWCKRRGIEEQRFYEVTKLRSQF 733
           C TAR+ LES+ GDP T+ N +  W+ VK +R   S+KWC+RRG+EE R YE+  LR QF
Sbjct: 630 CATARRPLESDQGDPFTLFNVFNAWVQVKSERSGNSRKWCRRRGVEEHRLYEMANLRRQF 689

Query: 734 KQVLGDSGLIT--DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--AD 789
           K++L D GL++   +  P  S S   R  +  E + L  +KR+  E   +RRK+L+   D
Sbjct: 690 KELLEDHGLLSGAQVVAPGDSYS---RLQQRRERRALHQLKRQHEEGGGRRRKVLRLQED 746

Query: 790 NAYEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVC 849
                EE+ E    +R +S     V ++L    +    A  S  ++ R   D L L  + 
Sbjct: 747 GCSSDEEDREGSTSQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTR---DQLALLKLV 803

Query: 850 MGLGDVRKFPFLEAPPAEN 868
           +G G    +P L  P A N
Sbjct: 804 LGRG---LYPQLAVPDAFN 819



 Score =  176 bits (447), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 106/139 (76%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF+QK+ F  L+K++  + +LP+AQY   I+ T+ + +VV++A
Sbjct: 127 LPPERVSEFRRALLHYLDFQQKQAFGRLVKLQRERAALPIAQYGNRILQTLKEHQVVVVA 186

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 187 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 246

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 247 TRSAATKIVFLTVGLLLRQ 265



 Score =  137 bits (344), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 133/274 (48%), Gaps = 47/274 (17%)

Query: 1186 STARSHKDVT-----ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFS 1240
            + A S +D+T     +LK++L  GLYPQ+A+ D FN+     + +FH + K    LHP  
Sbjct: 784  AAASSAQDLTRDQLALLKLVLGRGLYPQLAVPDAFNSGRKDSDQIFHTQAKQGTVLHPTC 843

Query: 1241 VFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPAL 1300
            VF + P+VL     +           GR+ +S KHQLL ++SLLET+KP+LVNC+R+PAL
Sbjct: 844  VFANSPEVLHTQGQEASGQEGSQD--GRDQMSCKHQLLAFVSLLETNKPYLVNCVRIPAL 901

Query: 1301 QTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEA-----------------------KST 1337
            Q+LLLFS +I TN D +RLV D W+E+ +   E+                          
Sbjct: 902  QSLLLFSRSIDTNGDCSRLVADGWLELQLADSESAVRLLATSLRLRVHWESALDRQLARQ 961

Query: 1338 ADVNQLEH---------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGA 1382
            A   +LE                +L+R+L+QFM     + Y +RRL   + + +Y     
Sbjct: 962  AQRRKLEQEEDMGSPAVSPQEVAALSRELLQFM--VAKVPYRLRRLTGLEAQNLYVGPQT 1019

Query: 1383 ESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
             +  P          +    T GG  V+ YL Y+
Sbjct: 1020 ITTAPSLPGLFGNSTLSPHPTKGGYAVSDYLTYN 1053



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 99/157 (63%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  +
Sbjct: 496 RTGPGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPAS 555

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L + GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 556 VETAILYLQEQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 615

Query: 929 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 965
             +  ++   ++L    +  P++   G      ++F+
Sbjct: 616 VQSPFTRSAQSNLDCATARRPLESDQGDPFTLFNVFN 652



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 265  QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSY 324

Query: 1175 FN 1176
            F+
Sbjct: 325  FS 326



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+  +  ++   +
Sbjct: 567  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQS 626

Query: 1040 SLGRFLSDLPVDIPLGKMLVFGSMFH 1065
            +L    +  P++   G      ++F+
Sbjct: 627  NLDCATARRPLESDQGDPFTLFNVFN 652



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 567  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 615



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 265 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 297



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 9/121 (7%)

Query: 137 LRQDSGLIT--DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--ADNA 192
           L +D GL++   +  P  S S   R  +  E + L  +KR+  E   +RRK+L+   D  
Sbjct: 692 LLEDHGLLSGAQVVAPGDSYS---RLQQRRERRALHQLKRQHEEGGGRRRKVLRLQEDGC 748

Query: 193 YEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNF--LSSYDILILDEVHERHL 250
              EE+ E    +R +S+D  +V+F+L+H+ +Q+Q A  +   L+   + +L  V  R L
Sbjct: 749 SSDEEDREGSTSQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTRDQLALLKLVLGRGL 808

Query: 251 Y 251
           Y
Sbjct: 809 Y 809


>gi|395751440|ref|XP_003779259.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DHX34 [Pongo abelii]
          Length = 1143

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 267/499 (53%), Positives = 354/499 (70%), Gaps = 12/499 (2%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +YF+  A +
Sbjct: 270 LPQYEVLIVDEVHERHLHNDFLLGVLRRLLSTRPDLKVILMSATINISLFSSYFSN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS++++AAQ Y   +Q W+  PLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISTVLKAAQTYASHTQRWVCCPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GSMF  ++ VL++AA LSVQSPFT  A   P+C
Sbjct: 569 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQSSPEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+RRGIEE R YE+  LR QFK
Sbjct: 629 AAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 794
           ++L D GL+           S  R  +  E + L  +KR+  E   +RRK+L+       
Sbjct: 689 ELLEDHGLLAGAQAAQVG-DSYSRLQQRRERRALHQLKRQHEEGTGRRRKVLRL------ 741

Query: 795 EEEEEEEEGERLESRTGPG 813
             +EE++ G   E R  P 
Sbjct: 742 --QEEQDGGSSDEDRASPA 758



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 100/132 (75%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E+   L  YLDF QK  F  L K++  + +LP+AQY   I+ T+ + +VV++AGDTGCGK
Sbjct: 132 EFHRALLHYLDFGQKHAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 134/272 (49%), Gaps = 59/272 (21%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            SH+ + +LK++L  GLYPQ+AI D FN S    + +FH + K    LHP  VF   P+VL
Sbjct: 793  SHEQLALLKLVLGRGLYPQLAIPDAFNNSRKDSDQIFHTQAKQGAVLHPTCVFAGSPEVL 852

Query: 1250 RISE------DDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTL 1303
               E      D   D         ++ +SSKHQLL ++SLLET+KP+LVNC+R+PALQ+L
Sbjct: 853  HTQELEASSCDGSQD--------DKDKMSSKHQLLSFVSLLETNKPYLVNCVRIPALQSL 904

Query: 1304 LLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAKSTADV------------------NQLEH 1345
            LLFS ++ TN D +RLV D W+E    LQ A S + V                   QL H
Sbjct: 905  LLFSRSLDTNGDCSRLVADGWLE----LQLADSESAVRLLAASLRLRARWESALDRQLVH 960

Query: 1346 ---------------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAES 1384
                                 +L+++L+QF  +A+ + YS+RRL   + + MY       
Sbjct: 961  QAQRRLEEEEQDVPVSPKEVATLSKELLQF--TASKIPYSLRRLTGLEAQNMYVGPHTIP 1018

Query: 1385 GVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
              P          +    T GG  VT +L Y+
Sbjct: 1019 ATPHLPGLFGSSTLSPHPTKGGYAVTDFLTYN 1050



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 84/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 554 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 49/62 (79%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLRRLLSTRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+    F   ++ 
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  SPECAAARRPLES 637



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 46.6 bits (109), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|392343937|ref|XP_003748826.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Rattus
           norvegicus]
          Length = 1215

 Score =  551 bits (1420), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 283/564 (50%), Positives = 383/564 (67%), Gaps = 15/564 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 263 QIQCEPRLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSY 322

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           F+  A +++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+
Sbjct: 323 FSH-APVVQVPGRLFPITVVYQPQEAEQSASKSEKLDPRPFLRVLEAIDNKYPPEERGDL 381

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG++EIS+++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STN
Sbjct: 382 LVFLSGMAEISTVLDAAQAYATLTQRWVVLPLHSALSVADQDKVFDVAPAGVRKCILSTN 441

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVCY
Sbjct: 442 IAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCY 501

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PPA ++E+++  L
Sbjct: 502 RLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPAASVETAILYL 561

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
              GA+DS E +T +G  L+ LPVD+ +GKM++ GSMF   + VL++AA LSVQSPFT  
Sbjct: 562 QDQGALDSSEALTPIGSLLAQLPVDVVIGKMMILGSMFSLAEPVLTIAAALSVQSPFTRS 621

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRV-RSKKWCKRRGIEEQRFYEVT 727
           A  + DC TAR+ LES+ GDP T+ N +  W+ VK +R   S+KWC+RRG+EE R YE+ 
Sbjct: 622 AQSNLDCATARRPLESDQGDPFTLFNVFNAWVQVKSERSGNSRKWCRRRGVEEHRLYEMA 681

Query: 728 KLRSQFKQVLGDSGLI--TDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKM 785
            LR QFK++L D GL+    +  P  S S   R  +  E + L  +KR+  E   +RRK+
Sbjct: 682 NLRRQFKELLEDHGLLRGAQVVAPRDSYS---RLQQRRERQTLHQLKRQHEEGGGRRRKV 738

Query: 786 LK-ADNAYEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLL 844
           L+  ++    +E+ E    +R +S     V ++L    +    A  S  ++ R   D L 
Sbjct: 739 LRLQEDGCSSDEDHEGSASQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTR---DQLA 795

Query: 845 LSLVCMGLGDVRKFPFLEAPPAEN 868
           L  + +G G    +P L  P A N
Sbjct: 796 LLKLVLGRG---LYPQLAVPDAFN 816



 Score =  176 bits (447), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 105/139 (75%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF+QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++A
Sbjct: 125 LPPERVSEFRRALLHYLDFQQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVA 184

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 185 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 244

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 245 TRSAATKIVFLTVGLLLRQ 263



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 134/274 (48%), Gaps = 47/274 (17%)

Query: 1186 STARSHKDVT-----ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFS 1240
            + A S +D+T     +LK++L  GLYPQ+A+ D FN+     + +FH + K    LHP  
Sbjct: 781  AAASSAQDLTRDQLALLKLVLGRGLYPQLAVPDAFNSGRKDSDQIFHTQAKQGTVLHPTC 840

Query: 1241 VFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPAL 1300
            VF + P+VL     +           G++ +S KHQLL ++SLLET+KP+LVNC+R+PAL
Sbjct: 841  VFANSPEVLHTQGPEASGREGSQD--GKDQMSCKHQLLAFVSLLETNKPYLVNCVRIPAL 898

Query: 1301 QTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEA-------------------------- 1334
            Q+LLLFS +I TN D +RLV D W+E+ +   E+                          
Sbjct: 899  QSLLLFSRSIDTNGDCSRLVADGWLELQLADSESAVRLLATSLRLRAHWESALDRQLAQQ 958

Query: 1335 ------------KSTADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGA 1382
                        +S A   Q   +L+R+L+QFM  A  + Y +RRL   + + +Y     
Sbjct: 959  AQRRKLEQEEDPESPAVSPQEVAALSRELLQFM--AAKVPYRLRRLTGLEAQNLYVGPQT 1016

Query: 1383 ESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
             +  P          +    T GG  V+ YL Y+
Sbjct: 1017 ITTAPSLPGLFGNSILSPHPTKGGYAVSDYLTYN 1050



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 105/174 (60%), Gaps = 1/174 (0%)

Query: 792 YEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 851
           + I +   E+   R   RTGPGVCYRLY+E  Y   A Y  PEIRRV++D+L+L +  M 
Sbjct: 478 FWISQASAEQRKGR-AGRTGPGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMS 536

Query: 852 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
           +GD R FPF+E PPA ++E+++  L   GA+DS E +T +G  L+ LPVD+ +GKM++ G
Sbjct: 537 VGDPRTFPFIEPPPAASVETAILYLQDQGALDSSEALTPIGSLLAQLPVDVVIGKMMILG 596

Query: 912 SMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 965
           SMF   + +L +  AL+  +  ++   ++L    +  P++   G      ++F+
Sbjct: 597 SMFSLAEPVLTIAAALSVQSPFTRSAQSNLDCATARRPLESDQGDPFTLFNVFN 650



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 263  QIQCEPRLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 49/86 (56%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
            GA+DS E +T +G  L+ LPVD+ +GKM++ GSMF   + +L +  AL+  +  ++   +
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMMILGSMFSLAEPVLTIAAALSVQSPFTRSAQS 624

Query: 1040 SLGRFLSDLPVDIPLGKMLVFGSMFH 1065
            +L    +  P++   G      ++F+
Sbjct: 625  NLDCATARRPLESDQGDPFTLFNVFN 650



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 34/49 (69%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS E +T +G  L+ LPVD+ +GKM++ GSMF   + +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMMILGSMFSLAEPVLTIAAALS 613



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQCEPRLPQYQVLIVDEVHERHLHNDFLLGVL 295



 Score = 43.5 bits (101), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 152 ASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK-ADNAYEIEEEEEEEEGERLESM 210
           A   S  R  +  E + L  +KR+  E   +RRK+L+  ++    +E+ E    +R +S+
Sbjct: 704 APRDSYSRLQQRRERQTLHQLKRQHEEGGGRRRKVLRLQEDGCSSDEDHEGSASQRADSV 763

Query: 211 DANEVEFRLKHDPKQVQVATDNF--LSSYDILILDEVHERHLY 251
           D  +V+F+L+H+ +Q+Q A  +   L+   + +L  V  R LY
Sbjct: 764 DIQDVKFKLRHNLEQLQAAASSAQDLTRDQLALLKLVLGRGLY 806


>gi|406855433|ref|NP_001258381.1| uncharacterized protein LOC684903 [Rattus norvegicus]
 gi|392337466|ref|XP_003753267.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Rattus
           norvegicus]
 gi|149056903|gb|EDM08334.1| rCG53727 [Rattus norvegicus]
          Length = 1143

 Score =  551 bits (1419), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 283/564 (50%), Positives = 383/564 (67%), Gaps = 15/564 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 264 QIQCEPRLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSY 323

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           F+  A +++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+
Sbjct: 324 FSH-APVVQVPGRLFPITVVYQPQEAEQSASKSEKLDPRPFLRVLEAIDNKYPPEERGDL 382

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG++EIS+++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STN
Sbjct: 383 LVFLSGMAEISTVLDAAQAYATLTQRWVVLPLHSALSVADQDKVFDVAPAGVRKCILSTN 442

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVCY
Sbjct: 443 IAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCY 502

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PPA ++E+++  L
Sbjct: 503 RLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPAASVETAILYL 562

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
              GA+DS E +T +G  L+ LPVD+ +GKM++ GSMF   + VL++AA LSVQSPFT  
Sbjct: 563 QDQGALDSSEALTPIGSLLAQLPVDVVIGKMMILGSMFSLAEPVLTIAAALSVQSPFTRS 622

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRV-RSKKWCKRRGIEEQRFYEVT 727
           A  + DC TAR+ LES+ GDP T+ N +  W+ VK +R   S+KWC+RRG+EE R YE+ 
Sbjct: 623 AQSNLDCATARRPLESDQGDPFTLFNVFNAWVQVKSERSGNSRKWCRRRGVEEHRLYEMA 682

Query: 728 KLRSQFKQVLGDSGLI--TDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKM 785
            LR QFK++L D GL+    +  P  S S   R  +  E + L  +KR+  E   +RRK+
Sbjct: 683 NLRRQFKELLEDHGLLRGAQVVAPRDSYS---RLQQRRERQTLHQLKRQHEEGGGRRRKV 739

Query: 786 LK-ADNAYEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLL 844
           L+  ++    +E+ E    +R +S     V ++L    +    A  S  ++ R   D L 
Sbjct: 740 LRLQEDGCSSDEDHEGSASQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTR---DQLA 796

Query: 845 LSLVCMGLGDVRKFPFLEAPPAEN 868
           L  + +G G    +P L  P A N
Sbjct: 797 LLKLVLGRG---LYPQLAVPDAFN 817



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 105/139 (75%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF+QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++A
Sbjct: 126 LPPERVSEFRRALLHYLDFQQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVA 185

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 186 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 245

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 246 TRSAATKIVFLTVGLLLRQ 264



 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 134/274 (48%), Gaps = 47/274 (17%)

Query: 1186 STARSHKDVT-----ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFS 1240
            + A S +D+T     +LK++L  GLYPQ+A+ D FN+     + +FH + K    LHP  
Sbjct: 782  AAASSAQDLTRDQLALLKLVLGRGLYPQLAVPDAFNSGRKDSDQIFHTQAKQGTVLHPTC 841

Query: 1241 VFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPAL 1300
            VF + P+VL     +           G++ +S KHQLL ++SLLET+KP+LVNC+R+PAL
Sbjct: 842  VFANSPEVLHTQGPEASGREGSQD--GKDQMSCKHQLLAFVSLLETNKPYLVNCVRIPAL 899

Query: 1301 QTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEA-----------------------KST 1337
            Q+LLLFS +I TN D +RLV D W+E+ +   E+                          
Sbjct: 900  QSLLLFSRSIDTNGDCSRLVADGWLELQLADSESAVRLLATSLRLRAHWESALDRQLAQQ 959

Query: 1338 ADVNQLEH---------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGA 1382
            A   +LE                +L+R+L+QFM  A  + Y +RRL   + + +Y     
Sbjct: 960  AQRRKLEQEEDPESPAVSPQEVAALSRELLQFM--AAKVPYRLRRLTGLEAQNLYVGPQT 1017

Query: 1383 ESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
             +  P          +    T GG  V+ YL Y+
Sbjct: 1018 ITTAPSLPGLFGNSILSPHPTKGGYAVSDYLTYN 1051



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 99/157 (63%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PPA +
Sbjct: 495 RTGPGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPAAS 554

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKM++ GSMF   + +L +  AL+
Sbjct: 555 VETAILYLQDQGALDSSEALTPIGSLLAQLPVDVVIGKMMILGSMFSLAEPVLTIAAALS 614

Query: 929 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 965
             +  ++   ++L    +  P++   G      ++F+
Sbjct: 615 VQSPFTRSAQSNLDCATARRPLESDQGDPFTLFNVFN 651



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 264  QIQCEPRLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSY 323

Query: 1175 FN 1176
            F+
Sbjct: 324  FS 325



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 49/86 (56%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
            GA+DS E +T +G  L+ LPVD+ +GKM++ GSMF   + +L +  AL+  +  ++   +
Sbjct: 566  GALDSSEALTPIGSLLAQLPVDVVIGKMMILGSMFSLAEPVLTIAAALSVQSPFTRSAQS 625

Query: 1040 SLGRFLSDLPVDIPLGKMLVFGSMFH 1065
            +L    +  P++   G      ++F+
Sbjct: 626  NLDCATARRPLESDQGDPFTLFNVFN 651



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 34/49 (69%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS E +T +G  L+ LPVD+ +GKM++ GSMF   + +L +  AL+
Sbjct: 566  GALDSSEALTPIGSLLAQLPVDVVIGKMMILGSMFSLAEPVLTIAAALS 614



 Score = 46.2 bits (108), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 264 QIQCEPRLPQYQVLIVDEVHERHLHNDFLLGVL 296



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 152 ASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK-ADNAYEIEEEEEEEEGERLESM 210
           A   S  R  +  E + L  +KR+  E   +RRK+L+  ++    +E+ E    +R +S+
Sbjct: 705 APRDSYSRLQQRRERQTLHQLKRQHEEGGGRRRKVLRLQEDGCSSDEDHEGSASQRADSV 764

Query: 211 DANEVEFRLKHDPKQVQVATDNF--LSSYDILILDEVHERHLY 251
           D  +V+F+L+H+ +Q+Q A  +   L+   + +L  V  R LY
Sbjct: 765 DIQDVKFKLRHNLEQLQAAASSAQDLTRDQLALLKLVLGRGLY 807


>gi|51874022|gb|AAH80856.1| DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Mus musculus]
          Length = 1145

 Score =  550 bits (1418), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/559 (50%), Positives = 382/559 (68%), Gaps = 18/559 (3%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF+  A +
Sbjct: 272 LPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSH-APV 330

Query: 377 IKVPGRLYPIQLEYHPIVELDRT--KSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
           ++VPGRL+PI + Y P  E D+T  KSEKLDP P++R+L  I+ KYP  ERGD+L+F+SG
Sbjct: 331 VQVPGRLFPITVVYQP-QEADQTASKSEKLDPRPFLRVLEAINNKYPPEERGDLLVFLSG 389

Query: 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494
           ++EI++++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+
Sbjct: 390 MAEITTVLDAAQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSV 449

Query: 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554
           TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVCYRLY+E 
Sbjct: 450 TIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAES 509

Query: 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAI 614
            Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L + GA+
Sbjct: 510 DYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASVETAILYLQEQGAL 569

Query: 615 DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPD 674
           DS E +T +G  L+ LPVD+ +GKML+ GSMF   + VL++AA LSVQSPFT  A  + D
Sbjct: 570 DSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLD 629

Query: 675 CETARKELESNHGDPLTVLNAYKEWLGVKKDRV-RSKKWCKRRGIEEQRFYEVTKLRSQF 733
           C TAR+ LES+ GDP T+ N +  W+ VK +R   S+KWC+RRG+EE R YE+  LR QF
Sbjct: 630 CATARRPLESDQGDPFTLFNVFNAWVQVKSERSGNSRKWCRRRGVEEHRLYEMANLRRQF 689

Query: 734 KQVLGDSGLIT--DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--AD 789
           K++L D GL++   +  P  S S   R  +  E + L  +KR+  E   +RRK+L+   D
Sbjct: 690 KELLEDHGLLSGAQVVAPGDSYS---RLQQRRERRALHQLKRQHEEGGGRRRKVLRLQED 746

Query: 790 NAYEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVC 849
                EE+ E    +R +S     V ++L    +    A  S  ++ R   D L L  + 
Sbjct: 747 GCSSDEEDREGSTSQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTR---DQLALLKLV 803

Query: 850 MGLGDVRKFPFLEAPPAEN 868
           +G G    +P L  P A N
Sbjct: 804 LGRG---LYPQLAVPDAFN 819



 Score =  176 bits (447), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 106/139 (76%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF+QK+ F  L+K++  + +LP+AQY   I+ T+ + +VV++A
Sbjct: 127 LPPERVSEFRRALLHYLDFQQKQAFGRLVKLQRERAALPIAQYGNRILQTLKEHQVVVVA 186

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 187 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 246

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 247 TRSAATKIVFLTVGLLLRQ 265



 Score =  137 bits (344), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 133/274 (48%), Gaps = 47/274 (17%)

Query: 1186 STARSHKDVT-----ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFS 1240
            + A S +D+T     +LK++L  GLYPQ+A+ D FN+     + +FH + K    LHP  
Sbjct: 784  AAASSAQDLTRDQLALLKLVLGRGLYPQLAVPDAFNSGRKDSDQIFHTQAKQGTVLHPTC 843

Query: 1241 VFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPAL 1300
            VF + P+VL     +           GR+ +S KHQLL ++SLLET+KP+LVNC+R+PAL
Sbjct: 844  VFANSPEVLHTQGQEASGQEGSQD--GRDQMSCKHQLLAFVSLLETNKPYLVNCVRIPAL 901

Query: 1301 QTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEA-----------------------KST 1337
            Q+LLLFS +I TN D +RLV D W+E+ +   E+                          
Sbjct: 902  QSLLLFSRSIDTNGDCSRLVADGWLELQLADSESAVRLLATSLRLRVHWESALDRQLARQ 961

Query: 1338 ADVNQLEH---------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGA 1382
            A   +LE                +L+R+L+QFM     + Y +RRL   + + +Y     
Sbjct: 962  AQRRKLEQEEDMGSPAVSPQEVAALSRELLQFM--VAKVPYRLRRLTGLEAQNLYVGPQT 1019

Query: 1383 ESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
             +  P          +    T GG  V+ YL Y+
Sbjct: 1020 ITTAPSLPGLFGNSTLSPHPTKGGYAVSDYLTYN 1053



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 99/157 (63%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  +
Sbjct: 496 RTGPGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPAS 555

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L + GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 556 VETAILYLQEQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 615

Query: 929 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 965
             +  ++   ++L    +  P++   G      ++F+
Sbjct: 616 VQSPFTRSAQSNLDCATARRPLESDQGDPFTLFNVFN 652



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 265  QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSY 324

Query: 1175 FN 1176
            F+
Sbjct: 325  FS 326



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+  +  ++   +
Sbjct: 567  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQS 626

Query: 1040 SLGRFLSDLPVDIPLGKMLVFGSMFH 1065
            +L    +  P++   G      ++F+
Sbjct: 627  NLDCATARRPLESDQGDPFTLFNVFN 652



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 567  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 615



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 265 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 297



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 9/121 (7%)

Query: 137 LRQDSGLIT--DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--ADNA 192
           L +D GL++   +  P  S S   R  +  E + L  +KR+  E   +RRK+L+   D  
Sbjct: 692 LLEDHGLLSGAQVVAPGDSYS---RLQQRRERRALHQLKRQHEEGGGRRRKVLRLQEDGC 748

Query: 193 YEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNF--LSSYDILILDEVHERHL 250
              EE+ E    +R +S+D  +V+F+L+H+ +Q+Q A  +   L+   + +L  V  R L
Sbjct: 749 SSDEEDREGSTSQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTRDQLALLKLVLGRGL 808

Query: 251 Y 251
           Y
Sbjct: 809 Y 809


>gi|37359788|dbj|BAC97872.1| mKIAA0134 protein [Mus musculus]
          Length = 1167

 Score =  550 bits (1418), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/559 (50%), Positives = 382/559 (68%), Gaps = 18/559 (3%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF+  A +
Sbjct: 294 LPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSH-APV 352

Query: 377 IKVPGRLYPIQLEYHPIVELDRT--KSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
           ++VPGRL+PI + Y P  E D+T  KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG
Sbjct: 353 VQVPGRLFPITVVYQP-QEADQTASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSG 411

Query: 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494
           ++EI++++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+
Sbjct: 412 MAEITTVLDAAQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSV 471

Query: 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554
           TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVCYRLY+E 
Sbjct: 472 TIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAES 531

Query: 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAI 614
            Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L + GA+
Sbjct: 532 DYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASVETAILYLQEQGAL 591

Query: 615 DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPD 674
           DS E +T +G  L+ LPVD+ +GKML+ GSMF   + VL++AA LSVQSPFT  A  + D
Sbjct: 592 DSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLD 651

Query: 675 CETARKELESNHGDPLTVLNAYKEWLGVKKDRV-RSKKWCKRRGIEEQRFYEVTKLRSQF 733
           C TAR+ LES+ GDP T+ N +  W+ VK +R   S+KWC+RRG+EE R YE+  LR QF
Sbjct: 652 CATARRPLESDQGDPFTLFNVFNAWVQVKSERSGNSRKWCRRRGVEEHRLYEMANLRRQF 711

Query: 734 KQVLGDSGLIT--DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--AD 789
           K++L D GL++   +  P  S S   R  +  E + L  +KR+  E   +RRK+L+   D
Sbjct: 712 KELLEDHGLLSGAQVVAPGDSYS---RLQQRRERRALHQLKRQHEEGGGRRRKVLRLQED 768

Query: 790 NAYEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVC 849
                EE+ +    +R +S     V ++L    +    A  S  ++ R   D L L  + 
Sbjct: 769 GCSSDEEDRKGSTSQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTR---DQLALLKLV 825

Query: 850 MGLGDVRKFPFLEAPPAEN 868
           +G G    +P L  P A N
Sbjct: 826 LGRG---LYPQLAVPDAFN 841



 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 105/139 (75%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF+QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++A
Sbjct: 149 LPPERVSEFRRALLHYLDFQQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVA 208

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 209 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 268

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 269 TRSAATKIVFLTVGLLLRQ 287



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 134/274 (48%), Gaps = 47/274 (17%)

Query: 1186 STARSHKDVT-----ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFS 1240
            + A S +D+T     +LK++L  GLYPQ+A+ D FN+     + +FH + K    LHP  
Sbjct: 806  AAASSAQDLTRDQLALLKLVLGRGLYPQLAVPDAFNSGRKDSDQIFHTQAKQGTVLHPTC 865

Query: 1241 VFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPAL 1300
            VF + P+VL     +           GR+ +S KHQLL ++SLLET+KP+LVNC+R+PAL
Sbjct: 866  VFANSPEVLHTQGQEASGQEGSQD--GRDQMSCKHQLLAFVSLLETNKPYLVNCVRIPAL 923

Query: 1301 QTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEA-----------------------KST 1337
            Q+LLLFS +I TN D +RLV D W+E+ +   E+                          
Sbjct: 924  QSLLLFSRSIDTNGDCSRLVADGWLELQLADSESAVRLLATSLRLRAHWESALDRQLARQ 983

Query: 1338 ADVNQLEH---------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGA 1382
            A   +LE                +L+R+L+QFM  A  + Y +RRL   + + +Y     
Sbjct: 984  AQRRKLEQEEDVGSPAVSPQEVAALSRELLQFM--AAKVPYRLRRLTGLEAQNLYVGPQT 1041

Query: 1383 ESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
             +  P          +    T GG  V+ YL Y+
Sbjct: 1042 ITTAPSLPGLFGNSTLSPHPTKGGYAVSDYLTYN 1075



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 99/157 (63%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  +
Sbjct: 518 RTGPGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPAS 577

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L + GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 578 VETAILYLQEQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 637

Query: 929 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 965
             +  ++   ++L    +  P++   G      ++F+
Sbjct: 638 VQSPFTRSAQSNLDCATARRPLESDQGDPFTLFNVFN 674



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 287  QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSY 346

Query: 1175 FN 1176
            F+
Sbjct: 347  FS 348



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+  +  ++   +
Sbjct: 589  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQS 648

Query: 1040 SLGRFLSDLPVDIPLGKMLVFGSMFH 1065
            +L    +  P++   G      ++F+
Sbjct: 649  NLDCATARRPLESDQGDPFTLFNVFN 674



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 589  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 637



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 287 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 319



 Score = 43.9 bits (102), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 9/121 (7%)

Query: 137 LRQDSGLIT--DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--ADNA 192
           L +D GL++   +  P  S S   R  +  E + L  +KR+  E   +RRK+L+   D  
Sbjct: 714 LLEDHGLLSGAQVVAPGDSYS---RLQQRRERRALHQLKRQHEEGGGRRRKVLRLQEDGC 770

Query: 193 YEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNF--LSSYDILILDEVHERHL 250
              EE+ +    +R +S+D  +V+F+L+H+ +Q+Q A  +   L+   + +L  V  R L
Sbjct: 771 SSDEEDRKGSTSQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTRDQLALLKLVLGRGL 830

Query: 251 Y 251
           Y
Sbjct: 831 Y 831


>gi|47116751|sp|Q9DBV3.2|DHX34_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DHX34; AltName:
           Full=DEAH box protein 34
          Length = 1145

 Score =  550 bits (1417), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/559 (50%), Positives = 382/559 (68%), Gaps = 18/559 (3%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF+  A +
Sbjct: 272 LPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSH-APV 330

Query: 377 IKVPGRLYPIQLEYHPIVELDRT--KSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
           ++VPGRL+PI + Y P  E D+T  KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG
Sbjct: 331 VQVPGRLFPITVVYQP-QEADQTASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSG 389

Query: 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494
           ++EI++++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+
Sbjct: 390 MAEITTVLDAAQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSV 449

Query: 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554
           TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVCYRLY+E 
Sbjct: 450 TIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAES 509

Query: 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAI 614
            Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L + GA+
Sbjct: 510 DYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASVETAILYLQEQGAL 569

Query: 615 DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPD 674
           DS E +T +G  L+ LPVD+ +GKML+ GSMF   + VL++AA LSVQSPFT  A  + D
Sbjct: 570 DSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLD 629

Query: 675 CETARKELESNHGDPLTVLNAYKEWLGVKKDRV-RSKKWCKRRGIEEQRFYEVTKLRSQF 733
           C TAR+ LES+ GDP T+ N +  W+ VK +R   S+KWC+RRG+EE R YE+  LR QF
Sbjct: 630 CATARRPLESDQGDPFTLFNVFNAWVQVKSERSGNSRKWCRRRGVEEHRLYEMANLRRQF 689

Query: 734 KQVLGDSGLIT--DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--AD 789
           K++L D GL++   +  P  S S   R  +  E + L  +KR+  E   +RRK+L+   D
Sbjct: 690 KELLEDHGLLSGAQVVAPGDSYS---RLQQRRERRALHQLKRQHEEGGGRRRKVLRLQED 746

Query: 790 NAYEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVC 849
                EE+ +    +R +S     V ++L    +    A  S  ++ R   D L L  + 
Sbjct: 747 GCSSDEEDRKGSTSQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTR---DQLALLKLV 803

Query: 850 MGLGDVRKFPFLEAPPAEN 868
           +G G    +P L  P A N
Sbjct: 804 LGRG---LYPQLAVPDAFN 819



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 105/139 (75%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF+QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++A
Sbjct: 127 LPPERVSEFRRALLHYLDFQQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVA 186

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 187 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 246

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 247 TRSAATKIVFLTVGLLLRQ 265



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 134/274 (48%), Gaps = 47/274 (17%)

Query: 1186 STARSHKDVT-----ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFS 1240
            + A S +D+T     +LK++L  GLYPQ+A+ D FN+     + +FH + K    LHP  
Sbjct: 784  AAASSAQDLTRDQLALLKLVLGRGLYPQLAVPDAFNSGRKDSDQIFHTQAKQGTVLHPTC 843

Query: 1241 VFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPAL 1300
            VF + P+VL     +           GR+ +S KHQLL ++SLLET+KP+LVNC+R+PAL
Sbjct: 844  VFANSPEVLHTQGQEASGQEGSQD--GRDQMSCKHQLLAFVSLLETNKPYLVNCVRIPAL 901

Query: 1301 QTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEA-----------------------KST 1337
            Q+LLLFS +I TN D +RLV D W+E+ +   E+                          
Sbjct: 902  QSLLLFSRSIDTNGDCSRLVADGWLELQLADSESAVRLLATSLRLRAHWESALDRQLARQ 961

Query: 1338 ADVNQLEH---------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGA 1382
            A   +LE                +L+R+L+QFM  A  + Y +RRL   + + +Y     
Sbjct: 962  AQRRKLEQEEDVGSPAVSPQEVAALSRELLQFM--AAKVPYRLRRLTGLEAQNLYVGPQT 1019

Query: 1383 ESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
             +  P          +    T GG  V+ YL Y+
Sbjct: 1020 ITTAPSLPGLFGNSTLSPHPTKGGYAVSDYLTYN 1053



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 99/157 (63%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  +
Sbjct: 496 RTGPGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPAS 555

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L + GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 556 VETAILYLQEQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 615

Query: 929 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 965
             +  ++   ++L    +  P++   G      ++F+
Sbjct: 616 VQSPFTRSAQSNLDCATARRPLESDQGDPFTLFNVFN 652



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 265  QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSY 324

Query: 1175 FN 1176
            F+
Sbjct: 325  FS 326



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+  +  ++   +
Sbjct: 567  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQS 626

Query: 1040 SLGRFLSDLPVDIPLGKMLVFGSMFH 1065
            +L    +  P++   G      ++F+
Sbjct: 627  NLDCATARRPLESDQGDPFTLFNVFN 652



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 567  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 615



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 265 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 297



 Score = 43.9 bits (102), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 9/121 (7%)

Query: 137 LRQDSGLIT--DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--ADNA 192
           L +D GL++   +  P  S S   R  +  E + L  +KR+  E   +RRK+L+   D  
Sbjct: 692 LLEDHGLLSGAQVVAPGDSYS---RLQQRRERRALHQLKRQHEEGGGRRRKVLRLQEDGC 748

Query: 193 YEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNF--LSSYDILILDEVHERHL 250
              EE+ +    +R +S+D  +V+F+L+H+ +Q+Q A  +   L+   + +L  V  R L
Sbjct: 749 SSDEEDRKGSTSQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTRDQLALLKLVLGRGL 808

Query: 251 Y 251
           Y
Sbjct: 809 Y 809


>gi|340376454|ref|XP_003386747.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like
           [Amphimedon queenslandica]
          Length = 1133

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 271/492 (55%), Positives = 364/492 (73%), Gaps = 16/492 (3%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           +++ D  LS YDV+++DE+HERH++ DFLLGV++ L+   +++K+ILMSATINI LF  Y
Sbjct: 214 QLSTDRDLSRYDVIIIDEVHERHINSDFLLGVLRILIDQRSDLKLILMSATINISLFSDY 273

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI-----VELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424
           F   A +IKVPGRLYPI L+Y PI     ++    KS KLDP PY+RIL +ID KYPR+E
Sbjct: 274 FQG-APVIKVPGRLYPIDLQYMPISNASVLQPTAQKSSKLDPQPYLRILQLIDNKYPRSE 332

Query: 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           RGDVL+F+SG++EI+S++   + Y E +  WI LPLHS LS+EEQD+VF  AP+G RKCI
Sbjct: 333 RGDVLVFLSGMNEIASLLHEVKSYGEATGRWIGLPLHSALSIEEQDKVFDVAPDGTRKCI 392

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           +STNIAETSITIDGIRFV+DSGKVKEM YD   KM+ LQEFWIS+AS+EQRKGRAGRTGP
Sbjct: 393 ISTNIAETSITIDGIRFVIDSGKVKEMGYDSHTKMNRLQEFWISQASSEQRKGRAGRTGP 452

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           GVC+RLYSE  YS   EY+TPEI+RV ++SL+L  + + LG++RKFPF+E+P   +IE+S
Sbjct: 453 GVCFRLYSESDYSSFPEYATPEIQRVPLESLVLQTIALDLGNIRKFPFIESPSLSSIETS 512

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           V  L +  A+ + ER+T +G+ L+ LPVD+ +GKML+ GS+FH I+ VL +AA LSVQSP
Sbjct: 513 VAFLKEQDALTNDERLTPVGKMLAQLPVDVVIGKMLIMGSLFHVIEPVLIIAAGLSVQSP 572

Query: 665 FTNRAFR--DPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQ 721
           FT  AF   +   ++ R+ LES+HGDP T+LNA+ EW+ VK+D V+ S +WCKRRGIEEQ
Sbjct: 573 FTQTAFNQDESSAQSTRQSLESDHGDPYTLLNAFDEWINVKRDGVKASSQWCKRRGIEEQ 632

Query: 722 RFYEVTKLRSQFKQVLGDSGLIT----DIPGPDASLSSRERALRHGEIKL--LQAIKRKK 775
           R YE+ KLR QF+ VL D  L+     +  G +     + R  +  E++   L+++ RK+
Sbjct: 633 RLYEMVKLRQQFRDVLLDHELLEREFHEASGEEEERERKSRWFQLSEVQQEELRSM-RKR 691

Query: 776 AEEAPKRRKMLK 787
                K+RK+LK
Sbjct: 692 HRTENKQRKVLK 703



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 105/132 (79%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++ ++R +L+F+QK KF  + KI   Q+ LP+ Q+K +I+  V   +VV+IAGDTGCGK
Sbjct: 83  EFRSVIRHFLNFQQKTKFQRIQKIIRDQSELPIYQFKDQILSAVRDNQVVLIAGDTGCGK 142

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL++  +++IACTQPRRIAC+SL+KRV+YETL++Y   + YQ+RFE+ R   TK
Sbjct: 143 STQVPQYLLRGSYEKIACTQPRRIACLSLAKRVSYETLNEYRTEIAYQVRFERSRTPATK 202

Query: 128 IVFITEGLLLRQ 139
           ++F+TEGLLLRQ
Sbjct: 203 VLFLTEGLLLRQ 214



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 175/362 (48%), Gaps = 80/362 (22%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEEE 1086
            A+ + ER+T +G+ L+ LPVD+ +GKML+ GS+FH I+ +L++   L+    F   +  +
Sbjct: 521  ALTNDERLTPVGKMLAQLPVDVVIGKMLIMGSLFHVIEPVLIIAAGLSVQSPFTQTAFNQ 580

Query: 1087 EEEEAGERLESM--DANEVEFRLKHDPKQVQVAADNFLSS-------------------- 1124
            +E  A    +S+  D  +    L    + + V  D   +S                    
Sbjct: 581  DESSAQSTRQSLESDHGDPYTLLNAFDEWINVKRDGVKASSQWCKRRGIEEQRLYEMVKL 640

Query: 1125 ----YDVLVLDEIHERHLH---GDFLLGVIKCLLHSTAEV-------------------K 1158
                 DVL+  E+ ER  H   G+      K      +EV                   K
Sbjct: 641  RQQFRDVLLDHELLEREFHEASGEEEERERKSRWFQLSEVQQEELRSMRKRHRTENKQRK 700

Query: 1159 IILMSA--------TINIELFHTYFNRIA--KDLLSGSTAR---SHKDVTILKVILASGL 1205
            ++ M          +I   L H  F  +     L  GS+ R   S +D+ +LK+++ SGL
Sbjct: 701  VLKMDHEVDEEEEVSIAAGLKHLEFKLLHDLSQLQDGSSERRSYSLRDINLLKIVICSGL 760

Query: 1206 YPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLKL 1265
            YPQVAIGD+ NT +   E +FH K K F+ LHP SVF+S PD+L   ++           
Sbjct: 761  YPQVAIGDDCNTFKKGSEQIFHTKSKSFLVLHPTSVFSSNPDLLFQQQEG---------- 810

Query: 1266 PGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSWI 1325
             G+ V    H LL Y  LLET++P++VN L++PALQTLLLF+ +I TN   +RLV D W+
Sbjct: 811  -GKKV----HYLLAYEKLLETNRPYMVNALKVPALQTLLLFTQSIDTNESCSRLVVDEWL 865

Query: 1326 EV 1327
            E+
Sbjct: 866  EI 867



 Score =  136 bits (343), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 99/145 (68%), Gaps = 2/145 (1%)

Query: 784 KMLKADNAYEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSL 843
           KM +    +  +   E+ +G     RTGPGVC+RLYSE  YS   EY+TPEI+RV ++SL
Sbjct: 426 KMNRLQEFWISQASSEQRKGR--AGRTGPGVCFRLYSESDYSSFPEYATPEIQRVPLESL 483

Query: 844 LLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIP 903
           +L  + + LG++RKFPF+E+P   +IE+SV  L +  A+ + ER+T +G+ L+ LPVD+ 
Sbjct: 484 VLQTIALDLGNIRKFPFIESPSLSSIETSVAFLKEQDALTNDERLTPVGKMLAQLPVDVV 543

Query: 904 LGKMLVFGSMFHQIDTMLLLDLALN 928
           +GKML+ GS+FH I+ +L++   L+
Sbjct: 544 IGKMLIMGSLFHVIEPVLIIAAGLS 568



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 49/62 (79%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q++ D  LS YDV+++DE+HERH++ DFLLGV++ L+   +++K+ILMSATINI LF  Y
Sbjct: 214  QLSTDRDLSRYDVIIIDEVHERHINSDFLLGVLRILIDQRSDLKLILMSATINISLFSDY 273

Query: 1175 FN 1176
            F 
Sbjct: 274  FQ 275



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 36/48 (75%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            A+ + ER+T +G+ L+ LPVD+ +GKML+ GS+FH I+ +L++   L+
Sbjct: 521  ALTNDERLTPVGKMLAQLPVDVVIGKMLIMGSLFHVIEPVLIIAAGLS 568



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 28/33 (84%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q++TD  LS YD++I+DEVHERH+  DFLLGV+
Sbjct: 214 QLSTDRDLSRYDVIIIDEVHERHINSDFLLGVL 246


>gi|377834224|ref|XP_003689451.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DHX34 [Mus musculus]
          Length = 1152

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/559 (50%), Positives = 382/559 (68%), Gaps = 18/559 (3%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF+  A +
Sbjct: 272 LPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSH-APV 330

Query: 377 IKVPGRLYPIQLEYHPIVELDRT--KSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
           ++VPGRL+PI + Y P  E D+T  KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG
Sbjct: 331 VQVPGRLFPITVVYQP-QEADQTASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSG 389

Query: 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494
           ++EI++++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+
Sbjct: 390 MAEITTVLDAAQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSV 449

Query: 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554
           TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVCYRLY+E 
Sbjct: 450 TIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAES 509

Query: 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAI 614
            Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L + GA+
Sbjct: 510 DYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASVETAILYLQEQGAL 569

Query: 615 DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPD 674
           DS E +T +G  L+ LPVD+ +GKML+ GSMF   + VL++AA LSVQSPFT  A  + D
Sbjct: 570 DSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLD 629

Query: 675 CETARKELESNHGDPLTVLNAYKEWLGVKKDRV-RSKKWCKRRGIEEQRFYEVTKLRSQF 733
           C TAR+ LES+ GDP T+ N +  W+ VK +R   S+KWC+RRG+EE R YE+  LR QF
Sbjct: 630 CATARRPLESDQGDPFTLFNVFNAWVQVKSERSGNSRKWCRRRGVEEHRLYEMANLRRQF 689

Query: 734 KQVLGDSGLIT--DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--AD 789
           K++L D GL++   +  P  S S   R  +  E + L  +KR+  E   +RRK+L+   D
Sbjct: 690 KELLEDHGLLSGAQVVAPGDSYS---RLQQRRERRALHQLKRQHEEGGGRRRKVLRLQED 746

Query: 790 NAYEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVC 849
                EE+ +    +R +S     V ++L    +    A  S  ++ R   D L L  + 
Sbjct: 747 GCSSDEEDRKGSTSQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTR---DQLALLKLV 803

Query: 850 MGLGDVRKFPFLEAPPAEN 868
           +G G    +P L  P A N
Sbjct: 804 LGRG---LYPQLAVPDAFN 819



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 105/139 (75%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF+QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++A
Sbjct: 127 LPPERVSEFRRALLHYLDFQQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVA 186

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 187 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 246

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 247 TRSAATKIVFLTVGLLLRQ 265



 Score =  139 bits (350), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 134/274 (48%), Gaps = 47/274 (17%)

Query: 1186 STARSHKDVT-----ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFS 1240
            + A S +D+T     +LK++L  GLYPQ+A+ D FN+     + +FH + K    LHP  
Sbjct: 784  AAASSAQDLTRDQLALLKLVLGRGLYPQLAVPDAFNSGRKDSDQIFHTQAKQGTVLHPTC 843

Query: 1241 VFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPAL 1300
            VF + P+VL     +           GR+ +S KHQLL ++SLLET+KP+LVNC+R+PAL
Sbjct: 844  VFANSPEVLHTQGQEASGQEGSQD--GRDQMSCKHQLLAFVSLLETNKPYLVNCVRIPAL 901

Query: 1301 QTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEA-----------------------KST 1337
            Q+LLLFS +I TN D +RLV D W+E+ +   E+                          
Sbjct: 902  QSLLLFSRSIDTNGDCSRLVADGWLELQLADSESAVRLLATSLRLRAHWESALDRQLARQ 961

Query: 1338 ADVNQLEH---------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGA 1382
            A   +LE                +L+R+L+QFM  A  + Y +RRL   + + +Y     
Sbjct: 962  AQRRKLEQEEDVGSPAVSPQEVAALSRELLQFM--AAKVPYRLRRLTGLEAQNLYVGPQT 1019

Query: 1383 ESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
             +  P          +    T GG  V+ YL Y+
Sbjct: 1020 ITTAPSLPGLFGNSTLSPHPTKGGYAVSDYLTYN 1053



 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 99/157 (63%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  +
Sbjct: 496 RTGPGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPAS 555

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L + GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 556 VETAILYLQEQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 615

Query: 929 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 965
             +  ++   ++L    +  P++   G      ++F+
Sbjct: 616 VQSPFTRSAQSNLDCATARRPLESDQGDPFTLFNVFN 652



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 265  QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSY 324

Query: 1175 FN 1176
            F+
Sbjct: 325  FS 326



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+  +  ++   +
Sbjct: 567  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQS 626

Query: 1040 SLGRFLSDLPVDIPLGKMLVFGSMFH 1065
            +L    +  P++   G      ++F+
Sbjct: 627  NLDCATARRPLESDQGDPFTLFNVFN 652



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 567  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 615



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 265 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 297



 Score = 43.9 bits (102), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 9/121 (7%)

Query: 137 LRQDSGLIT--DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--ADNA 192
           L +D GL++   +  P  S S   R  +  E + L  +KR+  E   +RRK+L+   D  
Sbjct: 692 LLEDHGLLSGAQVVAPGDSYS---RLQQRRERRALHQLKRQHEEGGGRRRKVLRLQEDGC 748

Query: 193 YEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNF--LSSYDILILDEVHERHL 250
              EE+ +    +R +S+D  +V+F+L+H+ +Q+Q A  +   L+   + +L  V  R L
Sbjct: 749 SSDEEDRKGSTSQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTRDQLALLKLVLGRGL 808

Query: 251 Y 251
           Y
Sbjct: 809 Y 809


>gi|344269389|ref|XP_003406535.1| PREDICTED: probable ATP-dependent RNA helicase DHX34 [Loxodonta
           africana]
          Length = 1051

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 268/475 (56%), Positives = 347/475 (73%), Gaps = 8/475 (1%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K++LMSATINI LF +YF   A +
Sbjct: 270 LPQYQVLIVDEVHERHLHNDFLLGVLRRLLPQRPDLKVVLMSATINIALFSSYFGG-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P  VE    KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITIVYQPPEVEPATAKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++ AAQ Y   +Q W+VLPLHSTLS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEAAQTYASHTQRWVVLPLHSTLSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++D+L+L +  M LGD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDALVLQMKSMSLGDPRAFPFIEPPPPASLETAILYLRDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
             E +T +G  L+ LPVD+ +GKMLV GS FH  + VL++AA LSVQSPFT  A  +P+C
Sbjct: 569 GTEALTPIGSLLAQLPVDVVIGKMLVLGSTFHLAEPVLTIAAALSVQSPFTRSAQSNPEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+RRGIEE R YE+  LR QFK
Sbjct: 629 AAARRPLESDQGDPFTLFNIFNTWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLI--TDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
            +L D  L+  T+ P P  S S   R  +  E + L  +KR+  E A +RRK+L+
Sbjct: 689 DLLEDHVLLAGTEAPRPGDSYS---RLQQRRERQALYQLKRQHEEGAGRRRKVLR 740



 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 105/139 (75%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF QK+ F  L K++  + +LP+AQY + I+ T+ + +VV++A
Sbjct: 125 LPPERVAEFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGKRILQTLKEHQVVVVA 184

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 185 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 244

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 245 TRSAATKIVFLTVGLLLRQ 263



 Score =  131 bits (329), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 82/120 (68%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++D+L+L +  M LGD R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSLGDPRAFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+D  E +T +G  L+ LPVD+ +GKMLV GS FH  + +L +  AL+
Sbjct: 554 LETAILYLRDQGALDGTEALTPIGSLLAQLPVDVVIGKMLVLGSTFHLAEPVLTIAAALS 613



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 10/116 (8%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S   + +LK++L  GLYPQ+A+ D FN+     + +FH + K    LHP  VF   P+VL
Sbjct: 793  SRDQMALLKLVLGRGLYPQLAVPDPFNSGCKDSDQIFHTQTKQGTVLHPTCVFAGSPEVL 852

Query: 1250 RISEDDIVDPPPGLKLPG----RNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQ 1301
               E      P      G    ++ +SSKHQLL ++SLLET+KP+LVNC+R+PALQ
Sbjct: 853  HTQE------PESRASDGSRDDKDKMSSKHQLLTFVSLLETNKPYLVNCVRVPALQ 902



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K++LMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLRRLLPQRPDLKVVLMSATINIALFSSY 322

Query: 1175 FN 1176
            F 
Sbjct: 323  FG 324



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+D  E +T +G  L+ LPVD+ +GKMLV GS FH  + +L +  AL+    F   ++ 
Sbjct: 565  GALDGTEALTPIGSLLAQLPVDVVIGKMLVLGSTFHLAEPVLTIAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  NPECAAARRPLES 637



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 33/49 (67%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+D  E +T +G  L+ LPVD+ +GKMLV GS FH  + +L +  AL+
Sbjct: 565  GALDGTEALTPIGSLLAQLPVDVVIGKMLVLGSTFHLAEPVLTIAAALS 613



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 295



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 145 TDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK----ADNAYEIEEEEE 200
           T+ P P  S S   R  +  E + L  +KR+  E A +RRK+L+     D A   E+   
Sbjct: 700 TEAPRPGDSYS---RLQQRRERQALYQLKRQHEEGAGRRRKVLRLQEEQDGASSDEDRGA 756

Query: 201 EEEGERLESMDANEVEFRLKHDPKQVQVATDNF--LSSYDILILDEVHERHLY 251
             + +  +S+D  +V+F+L+H+ +Q+Q A  +   LS   + +L  V  R LY
Sbjct: 757 TADQDSCDSVDIQDVKFKLRHNLEQLQAAASSAQDLSRDQMALLKLVLGRGLY 809


>gi|432889693|ref|XP_004075315.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Oryzias
           latipes]
          Length = 1148

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/488 (54%), Positives = 355/488 (72%), Gaps = 3/488 (0%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  D  LS Y V+++DE+HERHLH DFLLGV++ LL   +++++ILMSATINI+LF +Y
Sbjct: 261 QIQQDGSLSQYQVMIVDEVHERHLHCDFLLGVLRSLLADRSDLRLILMSATINIKLFSSY 320

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIV-ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           FN  A +++VPGRL+PIQ+ Y PI  E   ++SEKLDP PY+RIL  ID++YP  ERGD+
Sbjct: 321 FND-APVLQVPGRLFPIQVIYQPIPPEEQPSRSEKLDPRPYLRILQAIDQRYPPEERGDL 379

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG++EIS+I  A Q Y   ++ WIVLPLHSTLSL +QD+VF  AP G+RKCI+STN
Sbjct: 380 LLFLSGVAEISTIQEACQIYATHTRRWIVLPLHSTLSLAQQDKVFDIAPPGVRKCIISTN 439

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDG+RFVVDSGKVKEMS+D  AKM  LQEFWIS+AS+EQRKGRAGRTGPG+CY
Sbjct: 440 IAETSVTIDGVRFVVDSGKVKEMSFDPKAKMQRLQEFWISRASSEQRKGRAGRTGPGLCY 499

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY+E  Y   A Y  PEI RV++DSL+L +  MGLGD   F F++ PP  +I+++V  L
Sbjct: 500 RLYAESDYDAFAPYPVPEIHRVALDSLILQMKSMGLGDPLTFAFIDPPPTASIQTAVTYL 559

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            Q GA+DS   +TS+G  L+ LPVD+ +GKMLV GS+F+ ++ VL++AA LSVQSPF   
Sbjct: 560 KQQGALDSCGELTSIGSLLAQLPVDVVIGKMLVLGSVFNLVEPVLTVAAALSVQSPFLRS 619

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDR-VRSKKWCKRRGIEEQRFYEVT 727
           +  +PDC TAR+ L+SN GDP T+LN +  W+ VK +R   S+KWC+RRG+EEQR YE+ 
Sbjct: 620 SQHNPDCSTARQPLQSNQGDPFTLLNTFNAWVEVKGERGGGSRKWCRRRGLEEQRLYEMV 679

Query: 728 KLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
            LR QFK++L    L+       +     +R  R  E K L  +KR+   +   +RK+LK
Sbjct: 680 NLRRQFKELLKSHSLLESQESAPSGGDREQRRKRFTEKKKLHQMKREHELQEGSKRKVLK 739

Query: 788 ADNAYEIE 795
            +   E E
Sbjct: 740 MNEGQEGE 747



 Score =  157 bits (397), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 107/137 (78%)

Query: 3   PALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGD 62
           P    E++L L  +LDF Q++ F  L K+R+ Q +LP+ QY+  I++ V +  V+++AGD
Sbjct: 125 PHEISEFRLTLLHFLDFSQRQSFGKLAKLRQEQKNLPIFQYRDRIVELVKQHPVIVVAGD 184

Query: 63  TGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR 122
           TGCGKSTQ+PQYL+ AGF+ IACTQPRRIACISL+KRV++E+L+QY + VGYQIRFE  R
Sbjct: 185 TGCGKSTQVPQYLLSAGFKHIACTQPRRIACISLAKRVSFESLNQYGSKVGYQIRFETTR 244

Query: 123 REKTKIVFITEGLLLRQ 139
              TK++F+TEGLLLRQ
Sbjct: 245 TTATKLLFLTEGLLLRQ 261



 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 127/253 (50%), Gaps = 54/253 (21%)

Query: 1204 GLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGL 1263
            GLYPQ+A+ DE NT+    + +FH ++K  V +HP SVF S P+VL + E+DI +     
Sbjct: 812  GLYPQLAVADEHNTTRKDSDQVFHTRNKQGVVIHPTSVFASDPEVLHVPEEDIRET---- 867

Query: 1264 KLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDS 1323
                    SSKHQLL +++LLET+KP+L NC+R PALQ LLL ++++ TN+D TR+V D 
Sbjct: 868  -----GEQSSKHQLLAFVTLLETNKPYLSNCVRAPALQALLLVANSVDTNADCTRMVVDG 922

Query: 1324 WI------------------------EVFVPLQEAKSTA-----------DVNQLEHSLT 1348
            W+                        E  + +Q  +S++           DV +L  SL 
Sbjct: 923  WLELELREPEEALRVLSTALKLRAEWERLLQVQLGQSSSGGEAVQGVSRKDVGKLSDSLV 982

Query: 1349 RDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGS-----NPFVAEFPMVVEET 1403
            R L+      T + Y++RRL A   + +Y     E+ +  +     NP         +  
Sbjct: 983  RFLL-----YTEIRYTLRRLTALKTQNLYVGPQPETDLSDTKALVLNPLFPGAETKPDPI 1037

Query: 1404 LGGVRVTPYLVYD 1416
             GG+R+T    Y+
Sbjct: 1038 KGGLRLTSSFTYN 1050



 Score =  127 bits (319), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 84/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPG+CYRLY+E  Y   A Y  PEI RV++DSL+L +  MGLGD   F F++ PP  +
Sbjct: 492 RTGPGLCYRLYAESDYDAFAPYPVPEIHRVALDSLILQMKSMGLGDPLTFAFIDPPPTAS 551

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           I+++V  L Q GA+DS   +T++G  L+ LPVD+ +GKMLV GS+F+ ++ +L +  AL+
Sbjct: 552 IQTAVTYLKQQGALDSCGELTSIGSLLAQLPVDVVIGKMLVLGSVFNLVEPVLTVAAALS 611



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 50/62 (80%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D  LS Y V+++DE+HERHLH DFLLGV++ LL   +++++ILMSATINI+LF +Y
Sbjct: 261  QIQQDGSLSQYQVMIVDEVHERHLHCDFLLGVLRSLLADRSDLRLILMSATINIKLFSSY 320

Query: 1175 FN 1176
            FN
Sbjct: 321  FN 322



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 36/49 (73%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS   +TS+G  L+ LPVD+ +GKMLV GS+F+ ++ +L +  AL+
Sbjct: 563  GALDSCGELTSIGSLLAQLPVDVVIGKMLVLGSVFNLVEPVLTVAAALS 611



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 36/49 (73%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS   +TS+G  L+ LPVD+ +GKMLV GS+F+ ++ +L +  AL+
Sbjct: 563  GALDSCGELTSIGSLLAQLPVDVVIGKMLVLGSVFNLVEPVLTVAAALS 611



 Score = 48.9 bits (115), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  D  LS Y ++I+DEVHERHL+ DFLLGV+
Sbjct: 261 QIQQDGSLSQYQVMIVDEVHERHLHCDFLLGVL 293


>gi|296477579|tpg|DAA19694.1| TPA: DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Bos taurus]
          Length = 1146

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 262/489 (53%), Positives = 349/489 (71%), Gaps = 4/489 (0%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K++LMSATINI LF +YF   A +
Sbjct: 270 LPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVVLMSATINISLFSSYFGN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++  AQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEPAQAYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPTSLETAILYLRDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GSMFH  + VL++AA LSVQ+PFT  A  +P+C
Sbjct: 569 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQTPFTRSAQSNPEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
              R+ LES+ GDP T+LN +  W+ VK +R R S+KWC+ RGIEE R YE+  LR QFK
Sbjct: 629 AATRRPLESDQGDPFTLLNVFNTWVQVKSERGRNSRKWCRHRGIEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 794
           ++L D GL+     P     S  R  R  E + L  +KR+  E   ++RK+L+  +  + 
Sbjct: 689 ELLEDHGLLAGAQAPQPG-DSYSRLQRRRERQALYELKRRHEEGVGRKRKVLRVQDDQDG 747

Query: 795 EEEEEEEEG 803
              +E+  G
Sbjct: 748 WSSDEDRGG 756



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 102/139 (73%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+  + + +VV++A
Sbjct: 125 LPPERASEFRQALLHYLDFCQKQAFGRLAKLQRERAALPIAQYGHHILQMLKEHQVVVVA 184

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AG   +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 185 GDTGCGKSTQVPQYLLAAGCSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 244

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 245 TRSAATKIVFLTVGLLLRQ 263



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 139/277 (50%), Gaps = 54/277 (19%)

Query: 1184 SGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFT 1243
            S + A +   + +LK++L  GLYPQ+A+ D FN+S    + +FH + K  V LHP  VFT
Sbjct: 787  SSAQALTRDQMALLKLVLGRGLYPQLAVPDPFNSSRKDSDQIFHTQTKQGVVLHPTCVFT 846

Query: 1244 SQPDVLRISE------DDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRM 1297
            + P+VL   E      D   D         R+ +SSKHQL+ ++SLLET+KP+LVNC+R+
Sbjct: 847  NSPEVLHAQEQAARGSDGSRD--------DRDKMSSKHQLVTFVSLLETNKPYLVNCVRI 898

Query: 1298 PALQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAK---------------------- 1335
            PALQ+LLLFS ++ TN D +RLV D W+E+ +   E+                       
Sbjct: 899  PALQSLLLFSRSLDTNGDCSRLVADGWLELQLADTESAVRLLAASLRLRAHWESALDRQL 958

Query: 1336 ---------------STADVNQLE-HSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRR 1379
                             A VN  E  +L+R+L+QFM+S   ++YS+RRL   + + +Y  
Sbjct: 959  AHQARRRLEDEEEEEEEAPVNHKEVAALSRELLQFMTS--KVSYSLRRLTGLEAQNLYVG 1016

Query: 1380 TGAESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
                +  P               T GG  VT +L Y+
Sbjct: 1017 PQTITAAPSLPGLFGNSTPSPHPTKGGYAVTDFLTYN 1053



 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 1/137 (0%)

Query: 792 YEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 851
           + I +   E+   R   RTGPGVC+RLY+E  Y   A Y  PEIRRV++D+L+L +  M 
Sbjct: 478 FWISQASAEQRKGR-AGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMS 536

Query: 852 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
           +GD R FPF+E PP  ++E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ G
Sbjct: 537 VGDPRTFPFIEPPPPTSLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILG 596

Query: 912 SMFHQIDTMLLLDLALN 928
           SMFH  + +L +  AL+
Sbjct: 597 SMFHLAEPVLTIAAALS 613



 Score = 77.4 bits (189), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K++LMSATINI LF +Y
Sbjct: 263  QMQREPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVVLMSATINISLFSSY 322

Query: 1175 FN 1176
            F 
Sbjct: 323  FG 324



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + +L +  AL+    F   ++ 
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQTPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  NPECAATRRPLES 637



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALS 613



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QMQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 295


>gi|300798106|ref|NP_001179053.1| probable ATP-dependent RNA helicase DHX34 [Bos taurus]
          Length = 1146

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 261/489 (53%), Positives = 348/489 (71%), Gaps = 4/489 (0%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++  L    ++K++LMSATINI LF +YF   A +
Sbjct: 270 LPQYQVLIVDEVHERHLHNDFLLGVLQRQLPQRPDLKVVLMSATINISLFSSYFGN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++  AQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEPAQAYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPTSLETAILYLRDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GSMFH  + VL++AA LSVQ+PFT  A  +P+C
Sbjct: 569 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQTPFTRSAQSNPEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
              R+ LES+ GDP T+LN +  W+ VK +R R S+KWC+ RGIEE R YE+  LR QFK
Sbjct: 629 AATRRPLESDQGDPFTLLNVFNTWVQVKSERGRNSRKWCRHRGIEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 794
           ++L D GL+     P     S  R  R  E + L  +KR+  E   ++RK+L+  +  + 
Sbjct: 689 ELLEDHGLLAGAQAPQPG-DSYSRLQRRRERQALYELKRRHEEGVGRKRKVLRVQDDQDG 747

Query: 795 EEEEEEEEG 803
              +E+  G
Sbjct: 748 WSSDEDRGG 756



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 102/139 (73%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+  + + +VV++A
Sbjct: 125 LPPERASEFRQALLHYLDFCQKQAFGRLAKLQRERAALPIAQYGHRILQMLKEHQVVVVA 184

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AG   +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 185 GDTGCGKSTQVPQYLLAAGCSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 244

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 245 TRSAATKIVFLTVGLLLRQ 263



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 139/277 (50%), Gaps = 54/277 (19%)

Query: 1184 SGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFT 1243
            S + A +   + +LK++L  GLYPQ+A+ D FN+S    + +FH + K  V LHP  VFT
Sbjct: 787  SSAQALTRDQMALLKLVLGRGLYPQLAVPDPFNSSRKDSDQIFHTQTKQGVVLHPTCVFT 846

Query: 1244 SQPDVLRISE------DDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRM 1297
            + P+VL   E      D   D         R+ +SSKHQL+ ++SLLET+KP+LVNC+R+
Sbjct: 847  NSPEVLHAQEQAARGSDGSRD--------DRDKMSSKHQLVTFVSLLETNKPYLVNCVRI 898

Query: 1298 PALQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAK---------------------- 1335
            PALQ+LLLFS ++ TN D +RLV D W+E+ +   E+                       
Sbjct: 899  PALQSLLLFSRSLDTNGDCSRLVADGWLELQLADTESAVRLLAASLRLRAHWESALDRQL 958

Query: 1336 ---------------STADVNQLE-HSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRR 1379
                             A VN  E  +L+R+L+QFM+S   ++YS+RRL   + + +Y  
Sbjct: 959  AHQARRRLEDEEEEEEEAPVNHKEVAALSRELLQFMTS--KVSYSLRRLTGLEAQNLYVG 1016

Query: 1380 TGAESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
                +  P               T GG  VT +L Y+
Sbjct: 1017 PQTITAAPSLPGLFGNSTPSPHPTKGGYAVTDFLTYN 1053



 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 1/137 (0%)

Query: 792 YEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 851
           + I +   E+   R   RTGPGVC+RLY+E  Y   A Y  PEIRRV++D+L+L +  M 
Sbjct: 478 FWISQASAEQRKGR-AGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMS 536

Query: 852 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
           +GD R FPF+E PP  ++E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ G
Sbjct: 537 VGDPRTFPFIEPPPPTSLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILG 596

Query: 912 SMFHQIDTMLLLDLALN 928
           SMFH  + +L +  AL+
Sbjct: 597 SMFHLAEPVLTIAAALS 613



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 45/62 (72%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++  L    ++K++LMSATINI LF +Y
Sbjct: 263  QMQQEPSLPQYQVLIVDEVHERHLHNDFLLGVLQRQLPQRPDLKVVLMSATINISLFSSY 322

Query: 1175 FN 1176
            F 
Sbjct: 323  FG 324



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + +L +  AL+    F   ++ 
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQTPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  NPECAATRRPLES 637



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALS 613



 Score = 45.8 bits (107), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QMQQEPSLPQYQVLIVDEVHERHLHNDFLLGVL 295


>gi|334328705|ref|XP_001372978.2| PREDICTED: probable ATP-dependent RNA helicase DHX34 [Monodelphis
           domestica]
          Length = 1141

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/493 (53%), Positives = 358/493 (72%), Gaps = 8/493 (1%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +YF   A +
Sbjct: 269 LPQYQVLIVDEVHERHLHSDFLLGVLRRLLPARPDLKLILMSATINISLFSSYFGH-APV 327

Query: 377 IKVPGRLYPIQLEYHPIV--ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
           ++VPGRL+PI + Y P+   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG
Sbjct: 328 VQVPGRLFPITVIYQPVPKEEAPTSKSEKLDPRPFLRVLQAIDHKYPPEERGDLLVFLSG 387

Query: 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494
           ++EIS+++ A Q Y   ++ W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+
Sbjct: 388 MAEISAVLEAFQPYAAHTKRWVVLPLHSALSITDQDKVFDVAPPGVRKCILSTNIAETSV 447

Query: 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554
           TIDG+RFV+DSGKVKEMS+D  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVCYRLY+E 
Sbjct: 448 TIDGVRFVLDSGKVKEMSFDPKAKLQRLQEFWISRASAEQRKGRAGRTGPGVCYRLYAES 507

Query: 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAI 614
            Y   A Y  PEI+RV++D+L+L +  MGLGD R FPF+E PPA ++E+++  L   GA+
Sbjct: 508 DYDDFAPYPVPEIQRVALDALVLQMKSMGLGDPRNFPFIEPPPAASLETAIVYLRDQGAL 567

Query: 615 DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPD 674
           D+ E +T +G  LS+LPVD+ +GK+L+ G +F  ++ VL++AA LSVQSPF   A  + D
Sbjct: 568 DASENLTPIGTLLSELPVDVVIGKILILGCLFDLVEPVLTMAAALSVQSPFVRSAQSNLD 627

Query: 675 CETARKELESNHGDPLTVLNAYKEWLGVKKDR-VRSKKWCKRRGIEEQRFYEVTKLRSQF 733
           C TARK LES+HGDP T+LNA+  W+ VK DR   S+KWC+RRG+EE R YE+  LR QF
Sbjct: 628 CGTARKPLESDHGDPFTLLNAFNAWVQVKSDRSANSRKWCRRRGLEEHRMYEIANLRRQF 687

Query: 734 KQVLGDSGLITDI-PGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAY 792
           K +L D GL+ +  P P  S S +++  +  E   L  +KR+  E   ++RK+L+ +   
Sbjct: 688 KGLLQDHGLLAEARPAPADSYSRQQQHRQRRE---LYQLKREHEESEGRKRKVLRLEALE 744

Query: 793 EIEEEEEEEEGER 805
                +E+ E  R
Sbjct: 745 GGSSSDEDAEASR 757



 Score =  171 bits (434), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 104/132 (78%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  +  YLDF QK+ F  L K++  + +LP+A+Y + ++  + + +VV++AGDTGCGK
Sbjct: 131 EFRRAVLHYLDFGQKQAFGKLAKLQRERAALPMARYGRHLLQALQEHQVVVVAGDTGCGK 190

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV++E+LSQY + VGYQIRFE  R   TK
Sbjct: 191 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVSFESLSQYGSQVGYQIRFESTRSPATK 250

Query: 128 IVFITEGLLLRQ 139
           IVF+TEGLLLRQ
Sbjct: 251 IVFLTEGLLLRQ 262



 Score =  139 bits (350), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 132/266 (49%), Gaps = 48/266 (18%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S   + +LK++L  GLYPQ+A  D+FN      +  FH + K    LHP SVF S PD+L
Sbjct: 792  SRDQLALLKLVLGRGLYPQLATPDQFNGCRKDSDQFFHTQSKQGAVLHPTSVFASNPDLL 851

Query: 1250 RISEDDIVDPPPGLKLPGRNV---ISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLF 1306
            +  + +  +        GR+    +SS+HQLL ++SLLET+KP+LV+C+R+PALQ +LLF
Sbjct: 852  QGGQTEAREK-------GRDSKDGLSSRHQLLAFVSLLETNKPYLVSCVRLPALQAVLLF 904

Query: 1307 SSAIHTNSDFTRLVFDSWIEVFV---------------------------------PLQE 1333
            S ++ TN D +RLV D W+E  +                                 P  E
Sbjct: 905  SRSLDTNGDCSRLVADGWLEFRLESSERATQLLSTALRLRARWEEALDRQLARQAQPRSE 964

Query: 1334 AKSTADVN---QLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGSN 1390
             ++   +    ++  +L RDL+ FM S   ++YS  RL A + + +Y         P  +
Sbjct: 965  ERAAMALKAERKVAAALGRDLLDFMRS--KVSYSTHRLTALEAQNLYVGPQTVPAAPQLS 1022

Query: 1391 PFVAEFPMVVEETLGGVRVTPYLVYD 1416
                E  M   +T GG  VT +L Y+
Sbjct: 1023 AVFGETAMSPHDTKGGYAVTSFLTYN 1048



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 86/120 (71%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLY+E  Y   A Y  PEI+RV++D+L+L +  MGLGD R FPF+E PPA +
Sbjct: 494 RTGPGVCYRLYAESDYDDFAPYPVPEIQRVALDALVLQMKSMGLGDPRNFPFIEPPPAAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+D+ E +T +G  LS+LPVD+ +GK+L+ G +F  ++ +L +  AL+
Sbjct: 554 LETAIVYLRDQGALDASENLTPIGTLLSELPVDVVIGKILILGCLFDLVEPVLTMAAALS 613



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 262  QIQREPGLPQYQVLIVDEVHERHLHSDFLLGVLRRLLPARPDLKLILMSATINISLFSSY 321

Query: 1175 FN 1176
            F 
Sbjct: 322  FG 323



 Score = 48.5 bits (114), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+D+ E +T +G  LS+LPVD+ +GK+L+ G +F  ++ +L +  AL+
Sbjct: 565  GALDASENLTPIGTLLSELPVDVVIGKILILGCLFDLVEPVLTMAAALS 613



 Score = 48.5 bits (114), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 35/49 (71%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+D+ E +T +G  LS+LPVD+ +GK+L+ G +F  ++ +L +  AL+
Sbjct: 565  GALDASENLTPIGTLLSELPVDVVIGKILILGCLFDLVEPVLTMAAALS 613



 Score = 45.8 bits (107), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 262 QIQREPGLPQYQVLIVDEVHERHLHSDFLLGVL 294


>gi|395854231|ref|XP_003799601.1| PREDICTED: probable ATP-dependent RNA helicase DHX34 [Otolemur
           garnettii]
          Length = 1147

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 263/473 (55%), Positives = 345/473 (72%), Gaps = 4/473 (0%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF+  A +
Sbjct: 270 LPQYEVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINICLFSSYFSN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPATSKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDALVLQMKSMNVGDPRTFPFIEPPPPASLETAILYLRDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GSMF   + VL++AA LSVQSPFT  A   P+C
Sbjct: 569 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSSPEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+RRGIEE R YE+  LR QFK
Sbjct: 629 VAARRPLESDQGDPFTLFNVFNSWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
           ++L D GL+       A   S  R  +  E + L  +KR+  E   +RRK+L+
Sbjct: 689 ELLEDHGLLAGAQATKAE-DSYSRLQQRRERRALYQLKRQHEEGEGRRRKVLR 740



 Score =  173 bits (439), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 80/139 (57%), Positives = 104/139 (74%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF QK+ F  L +++  + +LP+AQY   I+ T+ + +VV++A
Sbjct: 125 LPPERVSEFRRALLHYLDFGQKQAFGRLARLQRERAALPIAQYGSRILKTLREHQVVVVA 184

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 185 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 244

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 245 TRSAATKIVFLTVGLLLRQ 263



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 126/254 (49%), Gaps = 51/254 (20%)

Query: 1206 YPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLKL 1265
            YPQ+AI D FN+     + +FH + K    LHP  VF+S P+VL   E      P     
Sbjct: 809  YPQLAIPDAFNSGRKDSDQIFHTQAKQGTVLHPTCVFSSSPEVLHTRE------PEARGC 862

Query: 1266 PG----RNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVF 1321
             G    ++ +SSKHQLL ++SLLET+KP+LVNC+R+PALQ+LLLFS ++ TN D +RLV 
Sbjct: 863  EGSREDKDKMSSKHQLLTFVSLLETNKPYLVNCVRIPALQSLLLFSRSLDTNGDCSRLVA 922

Query: 1322 DSWIEVFVP--------------LQEAKSTADVNQLEH---------------------- 1345
            D W+E+ +               L+E   +A   QL H                      
Sbjct: 923  DGWLELQLADSESAVRLLAASLRLRERWESALDRQLAHQAQRQRKLEEEEENETLPISPK 982

Query: 1346 ---SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGSNPFVAEFPMVVEE 1402
               +L+RDL+QFM  A+ + YS+RRL   + + +Y      +  P          +    
Sbjct: 983  EVAALSRDLLQFM--ASKVPYSLRRLTGLETQNLYVGPQTITAAPNLPGLFGSSTLSPHP 1040

Query: 1403 TLGGVRVTPYLVYD 1416
            T GG  VT +L Y+
Sbjct: 1041 TKGGYTVTDFLTYN 1054



 Score =  130 bits (327), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 83/120 (69%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMNVGDPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 554 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 613



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPNLPQYEVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINICLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+    F   ++ 
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  SPECVAARRPLES 637



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 613



 Score = 47.0 bits (110), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPNLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|189230270|ref|NP_001121459.1| DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Xenopus (Silurana)
           tropicalis]
 gi|183985702|gb|AAI66221.1| LOC100158553 protein [Xenopus (Silurana) tropicalis]
          Length = 1133

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 286/568 (50%), Positives = 390/568 (68%), Gaps = 18/568 (3%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  D+ L  Y V+++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI+LF  Y
Sbjct: 255 QIQRDSTLPQYQVIIVDEVHERHLHSDFLLGVLRQLLILRPDLKVILMSATINIKLFSGY 314

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDR-TKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           F + A +++VPGRL+PIQ+ Y PI + +  +KSEKLDP PY+ +L  ID KYP  ERGD+
Sbjct: 315 FEQ-APVLQVPGRLFPIQVIYQPIPQEETVSKSEKLDPRPYLHVLQAIDHKYPPDERGDL 373

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIF+SG++EISS+  A Q Y   +Q WIVLPLHSTLS+ +QD+VF  AP G+RKCI+STN
Sbjct: 374 LIFLSGVTEISSVQEAVQVYATHTQRWIVLPLHSTLSIADQDKVFDLAPVGVRKCIISTN 433

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDG+RFV+DSGKVKEMS+D  AKM  LQEFWIS+ASAEQRKGRAGRTGPGVCY
Sbjct: 434 IAETSVTIDGVRFVLDSGKVKEMSFDPKAKMQRLQEFWISRASAEQRKGRAGRTGPGVCY 493

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY+E  Y   + Y  PEI+RV++DSL+L +  M LG+ R FPF+E P   +IE+++  L
Sbjct: 494 RLYAESDYDAFSPYPVPEIQRVALDSLVLQMKSMELGNPRHFPFIEQPSMSSIETAIFYL 553

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
              GA+D  E +T +G+ L+ LPVD+ +GKML+ GS+F  ++ VL++A+ LSVQSP    
Sbjct: 554 RDQGALDINEELTPIGKLLAKLPVDVVIGKMLILGSLFSLVEPVLTIASALSVQSPILRN 613

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKD-RVRSKKWCKRRGIEEQRFYEVT 727
           +  +P+  TARK LES HGDP T+LN + EW+ VK + R  S+KWC+RRG+EEQR YE+ 
Sbjct: 614 STSNPEWGTARKPLESEHGDPFTLLNIFNEWVQVKANQRSNSRKWCRRRGLEEQRLYEMA 673

Query: 728 KLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
            LR QFK++L D GL+ +        +SR+R  +H E K L  +KR+      ++RK+LK
Sbjct: 674 NLRRQFKELLKDHGLLEENVAQRGDRNSRQR--QHKERKELHQLKRQHERVEKRKRKVLK 731

Query: 788 -----ADNAYEIEEE--EEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSI 840
                A ++ + EE+   E+   +R +S     V ++L     + L A  ST +      
Sbjct: 732 LQDEGAGSSSDGEEQYHTEKHRKDRKDSIDIQDVKFKL-RHNIHELHASSSTGQDLSSQE 790

Query: 841 DSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
            SLL  +VC GL     +P L  P + N
Sbjct: 791 VSLLKLIVCHGL-----YPQLGVPDSFN 813



 Score =  186 bits (472), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 87/133 (65%), Positives = 110/133 (82%)

Query: 7   EEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCG 66
           EE+K+ +  YLDF QK+ F+ L+K+R+ ++SLP+ QYK++II  V K +VV++AGDTGCG
Sbjct: 123 EEFKMSVLHYLDFTQKQSFAKLVKLRKERSSLPIFQYKEKIISMVHKHQVVVVAGDTGCG 182

Query: 67  KSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKT 126
           KSTQ+PQYL+ AGF  IACTQPRRIACISL+KRV +E+L+QY + VGYQIRFE  R   T
Sbjct: 183 KSTQVPQYLLAAGFGHIACTQPRRIACISLAKRVGFESLNQYGSKVGYQIRFESSRSPAT 242

Query: 127 KIVFITEGLLLRQ 139
           KIVFITEGLLLRQ
Sbjct: 243 KIVFITEGLLLRQ 255



 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 140/273 (51%), Gaps = 50/273 (18%)

Query: 1184 SGSTAR--SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSV 1241
            S ST +  S ++V++LK+I+  GLYPQ+ + D FN+     + +FH K+K  V LHP  V
Sbjct: 779  SSSTGQDLSSQEVSLLKLIVCHGLYPQLGVPDSFNSCRKDSDQVFHTKNKQGVVLHPTCV 838

Query: 1242 FTSQPDVLRI-SEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPAL 1300
            F+  P++L++ SE++      G K  G+   SS+HQ++ ++SLLET+KP+LVNC+R+ AL
Sbjct: 839  FSCNPELLQVNSEEESAGNESGNK--GQ---SSRHQIVAFVSLLETNKPYLVNCVRLSAL 893

Query: 1301 QTLLLFSSAIHTNSDFTRLVFDSWIEVFV------------------------------P 1330
            Q  LL +  I T++D  R+V D W+E+ V                              P
Sbjct: 894  QGFLLLARCIDTSADCCRIVCDKWMEMNVDNPESALCLITEAVQLRVALEKLLKSRLEKP 953

Query: 1331 LQEAKSTAD----VNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMY---RRTGAE 1383
             +    T D      Q    L R LV ++       YS+RRL A + + +Y   +   + 
Sbjct: 954  SRREDHTEDDAWTARQEAERLGRRLVDYVRPEA--IYSMRRLAALEAQNLYVGPQVLSSA 1011

Query: 1384 SGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
            SG+PG    V   P  ++   GG  VT +L Y+
Sbjct: 1012 SGLPGVFTGVELKPDPLK---GGYSVTNFLTYN 1041



 Score =  124 bits (312), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 83/120 (69%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLY+E  Y   + Y  PEI+RV++DSL+L +  M LG+ R FPF+E P   +
Sbjct: 486 RTGPGVCYRLYAESDYDAFSPYPVPEIQRVALDSLVLQMKSMELGNPRHFPFIEQPSMSS 545

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE+++  L   GA+D  E +T +G+ L+ LPVD+ +GKML+ GS+F  ++ +L +  AL+
Sbjct: 546 IETAIFYLRDQGALDINEELTPIGKLLAKLPVDVVIGKMLILGSLFSLVEPVLTIASALS 605



 Score = 77.4 bits (189), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 48/63 (76%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D+ L  Y V+++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI+LF  Y
Sbjct: 255  QIQRDSTLPQYQVIIVDEVHERHLHSDFLLGVLRQLLILRPDLKVILMSATINIKLFSGY 314

Query: 1175 FNR 1177
            F +
Sbjct: 315  FEQ 317



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+D  E +T +G+ L+ LPVD+ +GKML+ GS+F  ++ +L +  AL+
Sbjct: 557  GALDINEELTPIGKLLAKLPVDVVIGKMLILGSLFSLVEPVLTIASALS 605



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 35/49 (71%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+D  E +T +G+ L+ LPVD+ +GKML+ GS+F  ++ +L +  AL+
Sbjct: 557  GALDINEELTPIGKLLAKLPVDVVIGKMLILGSLFSLVEPVLTIASALS 605



 Score = 47.8 bits (112), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  D+ L  Y ++I+DEVHERHL+ DFLLGV+
Sbjct: 255 QIQRDSTLPQYQVIIVDEVHERHLHSDFLLGVL 287



 Score = 40.0 bits (92), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 11/115 (9%)

Query: 137 LRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK-----ADN 191
           L +D GL+ +        +SR+R  +H E K L  +KR+      ++RK+LK     A +
Sbjct: 682 LLKDHGLLEENVAQRGDRNSRQR--QHKERKELHQLKRQHERVEKRKRKVLKLQDEGAGS 739

Query: 192 AYEIEEE--EEEEEGERLESMDANEVEFRLKHDPKQVQV--ATDNFLSSYDILIL 242
           + + EE+   E+   +R +S+D  +V+F+L+H+  ++    +T   LSS ++ +L
Sbjct: 740 SSDGEEQYHTEKHRKDRKDSIDIQDVKFKLRHNIHELHASSSTGQDLSSQEVSLL 794


>gi|410910428|ref|XP_003968692.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Takifugu
           rubripes]
          Length = 1145

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 268/506 (52%), Positives = 361/506 (71%), Gaps = 9/506 (1%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  D  L+ Y V+++DE+HERHLH DFLLGV++ L+    ++++ILMSATINI+LF  Y
Sbjct: 260 QIQHDRTLAQYQVVIVDEVHERHLHCDFLLGVLRTLVAERPDLRLILMSATINIKLFSDY 319

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIV-ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           F R A +++VPGRL+PIQ+ Y PI  E   ++SEK+DP PY+RIL  ID++YP  ERGD+
Sbjct: 320 F-RSAPVLQVPGRLFPIQVTYQPIPPEEQASRSEKMDPRPYLRILQGIDQRYPPEERGDL 378

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIF+SG++EIS+I  A Q Y   ++ WIVLPLHSTLSL +QD+VF  +P G+RKCI+STN
Sbjct: 379 LIFLSGLAEISTIQEACQIYATHTRRWIVLPLHSTLSLAQQDKVFDISPTGVRKCIISTN 438

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDG+RFVVDSGKVKEMS+D  AKM  LQEFWIS+AS+EQRKGRAGRTGPGVCY
Sbjct: 439 IAETSVTIDGVRFVVDSGKVKEMSFDPKAKMQRLQEFWISRASSEQRKGRAGRTGPGVCY 498

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY+E  Y   A Y  PEI RVS+DSL+L +  M LGD   F F++ PPA +I++++  L
Sbjct: 499 RLYAESDYDAFAPYPVPEIHRVSLDSLILQMKSMDLGDPLSFVFIDPPPAASIQTAITYL 558

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GA+D +  +TS+G  L+ LPVD+ +GKMLV GS+F+ +++VL++AA LSVQSPF   
Sbjct: 559 KEQGALDRRGELTSIGSLLAQLPVDVVIGKMLVLGSLFNLVESVLTVAAALSVQSPFLRS 618

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDR-VRSKKWCKRRGIEEQRFYEVT 727
           +  +PDC TAR+ L SN GDP T+LN +  W+ +K +R   S+KWC+RRG+EEQR YE+ 
Sbjct: 619 SQHNPDCATARQSLHSNQGDPFTLLNTFNAWVEIKGERGGGSRKWCRRRGLEEQRLYEMV 678

Query: 728 KLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
            LR QFK +L D GL+       +     +R  R  E K L  +KR   +    +RK+LK
Sbjct: 679 NLRRQFKDLLKDHGLLESNFSTSSDGDRGQRRERLTERKKLHQMKRDHEQHESTKRKVLK 738

Query: 788 ADNAYEIEEEEEEEEGERLESRTGPG 813
            +     E ++E   G   E +TG G
Sbjct: 739 MN-----EGQDEFSSGSDTE-KTGRG 758



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/130 (57%), Positives = 103/130 (79%)

Query: 10  KLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKST 69
           ++ L  +LDF Q++ F  L K+R  Q +LP+ QY+ +I+D +    VV++AGDTGCGKST
Sbjct: 131 RVALLHFLDFTQRQSFIKLAKLRRDQKNLPIFQYRDKIVDLIRLHPVVVVAGDTGCGKST 190

Query: 70  QIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           Q+PQYL+ AGF  IACTQPRRIACISL+KRV++E+L+Q+ + VG+QIRFE  R + TK++
Sbjct: 191 QVPQYLLSAGFSHIACTQPRRIACISLAKRVSFESLNQFGSKVGHQIRFETTRTKATKLL 250

Query: 130 FITEGLLLRQ 139
           F+TEGLLLRQ
Sbjct: 251 FLTEGLLLRQ 260



 Score =  133 bits (334), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 145/273 (53%), Gaps = 47/273 (17%)

Query: 1180 KDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPF 1239
            +D +S S   S +   +LK++L  GLYPQ+A+ DE NTS    + +FH K+K  V +HP 
Sbjct: 786  QDAVSVSQDLSSRQQALLKLLLCRGLYPQMALPDEHNTSRKDSDQVFHTKNKQGVVMHPT 845

Query: 1240 SVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPA 1299
            SVF + P+VL + E++  D             SS+HQLL +++LLET++P+L NC+R+PA
Sbjct: 846  SVFATDPEVLLVPEEESRD----------TGNSSRHQLLAFVTLLETNRPYLTNCVRVPA 895

Query: 1300 LQTLLLFSSAIHTNSDFTRLVFDSWIEVFV--PLQEAKSTAD------------VNQLEH 1345
            LQTLLL ++ I +N+D TRLV D W+E+ +  P +  K  +             + QL+H
Sbjct: 896  LQTLLLVANTIDSNADCTRLVVDGWLELELRNPEEALKVLSSALTLRAEWERLLLAQLDH 955

Query: 1346 SLTR-----------------DLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGV-- 1386
            + +R                  LV+++   T + YS+RR+ A  ++ +Y     ESG+  
Sbjct: 956  NTSRGESTQGVSRKTTEKLSEGLVRYL-MYTEVIYSLRRITALQMQNLYIGPQTESGLSN 1014

Query: 1387 ---PGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
               PG            +   GG++VT +  Y+
Sbjct: 1015 LKSPGLGSLSPGTEAKPDPIKGGLQVTSFFTYN 1047



 Score =  127 bits (318), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 85/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLY+E  Y   A Y  PEI RVS+DSL+L +  M LGD   F F++ PPA +
Sbjct: 491 RTGPGVCYRLYAESDYDAFAPYPVPEIHRVSLDSLILQMKSMDLGDPLSFVFIDPPPAAS 550

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           I++++  L + GA+D +  +T++G  L+ LPVD+ +GKMLV GS+F+ ++++L +  AL+
Sbjct: 551 IQTAITYLKEQGALDRRGELTSIGSLLAQLPVDVVIGKMLVLGSLFNLVESVLTVAAALS 610



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 47/61 (77%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D  L+ Y V+++DE+HERHLH DFLLGV++ L+    ++++ILMSATINI+LF  Y
Sbjct: 260  QIQHDRTLAQYQVVIVDEVHERHLHCDFLLGVLRTLVAERPDLRLILMSATINIKLFSDY 319

Query: 1175 F 1175
            F
Sbjct: 320  F 320



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 37/49 (75%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+D +  +TS+G  L+ LPVD+ +GKMLV GS+F+ ++++L +  AL+
Sbjct: 562  GALDRRGELTSIGSLLAQLPVDVVIGKMLVLGSLFNLVESVLTVAAALS 610



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 37/49 (75%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+D +  +TS+G  L+ LPVD+ +GKMLV GS+F+ ++++L +  AL+
Sbjct: 562  GALDRRGELTSIGSLLAQLPVDVVIGKMLVLGSLFNLVESVLTVAAALS 610



 Score = 47.0 bits (110), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  D  L+ Y ++I+DEVHERHL+ DFLLGV+
Sbjct: 260 QIQHDRTLAQYQVVIVDEVHERHLHCDFLLGVL 292


>gi|291413336|ref|XP_002722916.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 34 isoform 2
           [Oryctolagus cuniculus]
          Length = 1142

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/477 (54%), Positives = 347/477 (72%), Gaps = 12/477 (2%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF   A +
Sbjct: 270 LPQYEVLIVDEVHERHLHNDFLLGVLRRLLPQRPDLKVILMSATINISLFSSYFGN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLQAIDNKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++D+L+L +  M +G+ R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDALVLQMKSMSVGNPRTFPFIEPPPPASLETAILYLQDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GS+F   + +L++AA LSVQSPFT  A    +C
Sbjct: 569 SSESLTPIGSLLAQLPVDVVIGKMLILGSVFSLAEPMLTVAAALSVQSPFTRSAQSSLEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ LES+ GDPLT+ N +  W+ VK +R R S+KWC+RRGIEE R YE+  LR QFK
Sbjct: 629 AAARRPLESDQGDPLTLFNIFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLITD----IPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
           ++L D GL+ +     PG      S  R  +  E + L  +KR+  E A +RRK+L+
Sbjct: 689 ELLEDHGLLAEAQLVAPG-----DSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLR 740



 Score =  176 bits (447), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 107/139 (76%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF QK+ F+ L K++  + +LP+AQY++ I+ T+ + +VV++A
Sbjct: 125 LPPERASEFRRALLHYLDFSQKQAFARLAKLQRERAALPIAQYEKRILRTLKEHQVVVVA 184

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 185 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSKVGYQIRFES 244

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 245 TRSAATKIVFLTVGLLLRQ 263



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 132/268 (49%), Gaps = 52/268 (19%)

Query: 1192 KDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRI 1251
            + + +LK++L  GLYPQ+A+ D  N+     + +FH + K    LHP  VF + P+VL  
Sbjct: 792  EQMALLKLVLGRGLYPQLAVPDALNSGRKDSDQVFHTQAKQGTVLHPTCVFANNPEVLHT 851

Query: 1252 SEDDIVDPPPGLKLPG-RNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAI 1310
             E +      G    G ++ ++S HQLL ++SLLET+KP+LVNC+R+PALQ+LLLFS ++
Sbjct: 852  QERETAG---GEGKQGDKDKMNSSHQLLAFVSLLETNKPYLVNCVRIPALQSLLLFSRSL 908

Query: 1311 HTNSDFTRLVFDSWIEVFVPLQEAKSTADV------------------NQLEH------- 1345
             TN D +RLV D W+E    LQ A S + V                   QL H       
Sbjct: 909  DTNGDCSRLVADGWLE----LQLADSESAVRLLTASLRLRAHWESALDRQLAHQARRQHL 964

Query: 1346 -----------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPG 1388
                             +L+R+L+QFM  A+ + YS+RRL   + + +Y      +  P 
Sbjct: 965  EEEEGEEAPPISRKEVAALSRELLQFM--ASKVPYSLRRLTGLETQNLYVGPQTVTAAPS 1022

Query: 1389 SNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
                     +      GG  VT +L Y+
Sbjct: 1023 LPGLFGSSTLSPHPIKGGYAVTDFLTYN 1050



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 99/157 (63%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++D+L+L +  M +G+ R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGNPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GS+F   + ML +  AL+
Sbjct: 554 LETAILYLQDQGALDSSESLTPIGSLLAQLPVDVVIGKMLILGSVFSLAEPMLTVAAALS 613

Query: 929 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 965
             +  ++   +SL    +  P++   G  L   ++F+
Sbjct: 614 VQSPFTRSAQSSLECAAARRPLESDQGDPLTLFNIFN 650



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLRRLLPQRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F 
Sbjct: 323  FG 324



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 50/86 (58%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
            GA+DS E +T +G  L+ LPVD+ +GKML+ GS+F   + ML +  AL+  +  ++   +
Sbjct: 565  GALDSSESLTPIGSLLAQLPVDVVIGKMLILGSVFSLAEPMLTVAAALSVQSPFTRSAQS 624

Query: 1040 SLGRFLSDLPVDIPLGKMLVFGSMFH 1065
            SL    +  P++   G  L   ++F+
Sbjct: 625  SLECAAARRPLESDQGDPLTLFNIFN 650



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GS+F   + ML +  AL+    F   ++ 
Sbjct: 565  GALDSSESLTPIGSLLAQLPVDVVIGKMLILGSVFSLAEPMLTVAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  SLECAAARRPLES 637



 Score = 47.0 bits (110), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|291413334|ref|XP_002722915.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 34 isoform 1
           [Oryctolagus cuniculus]
          Length = 1143

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/477 (54%), Positives = 347/477 (72%), Gaps = 12/477 (2%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF   A +
Sbjct: 270 LPQYEVLIVDEVHERHLHNDFLLGVLRRLLPQRPDLKVILMSATINISLFSSYFGN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLQAIDNKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++D+L+L +  M +G+ R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDALVLQMKSMSVGNPRTFPFIEPPPPASLETAILYLQDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GS+F   + +L++AA LSVQSPFT  A    +C
Sbjct: 569 SSESLTPIGSLLAQLPVDVVIGKMLILGSVFSLAEPMLTVAAALSVQSPFTRSAQSSLEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ LES+ GDPLT+ N +  W+ VK +R R S+KWC+RRGIEE R YE+  LR QFK
Sbjct: 629 AAARRPLESDQGDPLTLFNIFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLITD----IPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
           ++L D GL+ +     PG      S  R  +  E + L  +KR+  E A +RRK+L+
Sbjct: 689 ELLEDHGLLAEAQLVAPG-----DSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLR 740



 Score =  176 bits (447), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 107/139 (76%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF QK+ F+ L K++  + +LP+AQY++ I+ T+ + +VV++A
Sbjct: 125 LPPERASEFRRALLHYLDFSQKQAFARLAKLQRERAALPIAQYEKRILRTLKEHQVVVVA 184

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 185 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSKVGYQIRFES 244

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 245 TRSAATKIVFLTVGLLLRQ 263



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 132/268 (49%), Gaps = 52/268 (19%)

Query: 1192 KDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRI 1251
            + + +LK++L  GLYPQ+A+ D  N+     + +FH + K    LHP  VF + P+VL  
Sbjct: 792  EQMALLKLVLGRGLYPQLAVPDALNSGRKDSDQVFHTQAKQGTVLHPTCVFANNPEVLHT 851

Query: 1252 SEDDIVDPPPGLKLPG-RNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAI 1310
             E +      G    G ++ ++S HQLL ++SLLET+KP+LVNC+R+PALQ+LLLFS ++
Sbjct: 852  QERETAG---GEGKQGDKDKMNSSHQLLAFVSLLETNKPYLVNCVRIPALQSLLLFSRSL 908

Query: 1311 HTNSDFTRLVFDSWIEVFVPLQEAKSTADV------------------NQLEH------- 1345
             TN D +RLV D W+E    LQ A S + V                   QL H       
Sbjct: 909  DTNGDCSRLVADGWLE----LQLADSESAVRLLTASLRLRAHWESALDRQLAHQARRQHL 964

Query: 1346 -----------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPG 1388
                             +L+R+L+QFM  A+ + YS+RRL   + + +Y      +  P 
Sbjct: 965  EEEEGEEAPPISRKEVAALSRELLQFM--ASKVPYSLRRLTGLETQNLYVGPQTVTAAPS 1022

Query: 1389 SNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
                     +      GG  VT +L Y+
Sbjct: 1023 LPGLFGSSTLSPHPIKGGYAVTDFLTYN 1050



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 99/157 (63%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++D+L+L +  M +G+ R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGNPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GS+F   + ML +  AL+
Sbjct: 554 LETAILYLQDQGALDSSESLTPIGSLLAQLPVDVVIGKMLILGSVFSLAEPMLTVAAALS 613

Query: 929 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 965
             +  ++   +SL    +  P++   G  L   ++F+
Sbjct: 614 VQSPFTRSAQSSLECAAARRPLESDQGDPLTLFNIFN 650



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLRRLLPQRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F 
Sbjct: 323  FG 324



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 50/86 (58%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
            GA+DS E +T +G  L+ LPVD+ +GKML+ GS+F   + ML +  AL+  +  ++   +
Sbjct: 565  GALDSSESLTPIGSLLAQLPVDVVIGKMLILGSVFSLAEPMLTVAAALSVQSPFTRSAQS 624

Query: 1040 SLGRFLSDLPVDIPLGKMLVFGSMFH 1065
            SL    +  P++   G  L   ++F+
Sbjct: 625  SLECAAARRPLESDQGDPLTLFNIFN 650



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS E +T +G  L+ LPVD+ +GKML+ GS+F   + ML +  AL+
Sbjct: 565  GALDSSESLTPIGSLLAQLPVDVVIGKMLILGSVFSLAEPMLTVAAALS 613



 Score = 47.0 bits (110), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|357613044|gb|EHJ68284.1| ATP-dependent RNA helicase [Danaus plexippus]
          Length = 906

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/492 (56%), Positives = 365/492 (74%), Gaps = 13/492 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++++DN L  YDV++LDEIHERHL GDFLLGV+KCL+H+  ++K++LMSATINI+LF  Y
Sbjct: 36  QMSSDN-LPEYDVIILDEIHERHLMGDFLLGVLKCLIHTRTDIKLVLMSATINIKLFQDY 94

Query: 370 FN-RIAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           F+   A +I+VPGRL+ I+L Y PI +E   ++ +KLDP PY++I+ +ID KYP+ ERGD
Sbjct: 95  FSAESAVVIQVPGRLFSIELNYKPILIEEKPSRHDKLDPQPYVQIMQLIDSKYPKEERGD 154

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG+ EI++I  AAQ+Y EK++ WIVLPLHS LSL EQD+VF Y P+G+RKCIVST
Sbjct: 155 LLIFMSGVQEITTICDAAQQYAEKTKSWIVLPLHSALSLSEQDKVFDYPPDGVRKCIVST 214

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           NIAETS+TIDGIRFV+DSGKVKEMSYD + KM  L+EFWISKASA+QRKGRAGRTGPGVC
Sbjct: 215 NIAETSVTIDGIRFVIDSGKVKEMSYDSSTKMQRLKEFWISKASADQRKGRAGRTGPGVC 274

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
           YR+YSE+Q++ +  YSTPE+ RV I SLLL +  +G+ DVR+FPF++AP    IE ++  
Sbjct: 275 YRVYSEQQFTEMEPYSTPEVSRVPITSLLLLMTSLGVNDVRRFPFIDAPSDAAIEDALLE 334

Query: 608 LTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMF--HQIDTVLSLAAVLSVQSPF 665
           L QH    S E++T LGR +S LP+++ L K LV  +          L LA  L ++   
Sbjct: 335 LKQHLIYASNEKLTPLGRCISSLPLEVSLAKSLVISATLPPQCQYASLVLAGALGLRGVL 394

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYE 725
           T R  RD DCE ARK  ES+HGDP+T+L  Y  WL  +K     + WC+RRGIEEQR YE
Sbjct: 395 TRRG-RDLDCENARKPDESDHGDPITLLCLYCSWLR-EKSSGGGRAWCRRRGIEEQRLYE 452

Query: 726 VTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRK---KAEEAPKR 782
           +TKL +Q + +L D+ L+ D P P+ ++SS ERA+RHG++K L+ ++R+   KA E  KR
Sbjct: 453 LTKLTAQLRSLLQDNNLL-DSPEPE-TMSSSERAMRHGQLKQLKDLRRQYKQKAAEDAKR 510

Query: 783 RKMLKADNAYEI 794
           RK LK D  +EI
Sbjct: 511 RKRLKVD-TWEI 521



 Score =  163 bits (413), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/277 (36%), Positives = 149/277 (53%), Gaps = 51/277 (18%)

Query: 1180 KDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPF 1239
            + L+SG++    +D+ +LK++L   LYPQ+AI DEFN  +T  E L+H   K  V LHP 
Sbjct: 546  RALISGASTSGGQDLVMLKIVLCRALYPQIAIADEFNYCKT--EQLYHTWSKPSVYLHPT 603

Query: 1240 SVFTSQPDVLRISEDDIVDPPPGLK--LPGRNVISSKHQLLVYMSLLETSKPFLVNCLRM 1297
            S F   P  L+++E DI    PG K  LP    +S+KHQLL Y+SLLET+KP++VN +RM
Sbjct: 604  SYFGRYPKALQLTETDI-QTAPGYKSKLP----LSNKHQLLCYLSLLETTKPYIVNSMRM 658

Query: 1298 PALQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEA--------------------KST 1337
            PA QTLLL + +I TN+ FTR+V DSW+ +  P  E+                    +  
Sbjct: 659  PAAQTLLLLAHSIDTNTGFTRIVCDSWLLLEFPFPESGCQLLYRASTIRKKWDELINRKL 718

Query: 1338 ADVN------------------QLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRR 1379
            AD N                  +L+H L+ ++ ++M+    ++Y+++RLL  DLK +Y  
Sbjct: 719  ADANPNRSVEEELQKSNQMGYEELQHELSCEISKYMN--CDVSYTLKRLLPGDLKVLY-- 774

Query: 1380 TGAESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
             G        NPF   +     +  GGV VT  +VY+
Sbjct: 775  DGDTQTTVSPNPFDQTYVCRPHDKKGGVYVTDNIVYN 811



 Score =  103 bits (256), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 85/137 (62%), Gaps = 3/137 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYR+YSE+Q++ +  YSTPE+ RV I SLLL +  +G+ DVR+FPF++AP    
Sbjct: 268 RTGPGVCYRVYSEQQFTEMEPYSTPEVSRVPITSLLLLMTSLGVNDVRRFPFIDAPSDAA 327

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE ++  L QH    S E++T LGR +S LP+++ L K LV  +          L LA  
Sbjct: 328 IEDALLELKQHLIYASNEKLTPLGRCISSLPLEVSLAKSLVISATLPPQCQYASLVLA-- 385

Query: 929 FGAIDSKERVTSLGRFL 945
            GA+  +  +T  GR L
Sbjct: 386 -GALGLRGVLTRRGRDL 401



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 54/62 (87%), Gaps = 1/62 (1%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+++DN L  YDV++LDEIHERHL GDFLLGV+KCL+H+  ++K++LMSATINI+LF  Y
Sbjct: 36   QMSSDN-LPEYDVIILDEIHERHLMGDFLLGVLKCLIHTRTDIKLVLMSATINIKLFQDY 94

Query: 1175 FN 1176
            F+
Sbjct: 95   FS 96



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%), Gaps = 1/43 (2%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEI 269
           Q+++DN L  YD++ILDE+HERHL GDFLLGV+   +H   +I
Sbjct: 36  QMSSDN-LPEYDVIILDEIHERHLMGDFLLGVLKCLIHTRTDI 77



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query: 105 LSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
           L+Q+   VGYQIRFEK +   TKI FITEGLLLRQ S 
Sbjct: 2   LTQFDTKVGYQIRFEKSKTSDTKICFITEGLLLRQMSS 39



 Score = 48.9 bits (115), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 17/138 (12%)

Query: 119 EKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKR---K 175
           E+   E TK+      LL  QD+ L+ D P P+ ++SS ERA+RHG++K L+ ++R   +
Sbjct: 447 EQRLYELTKLTAQLRSLL--QDNNLL-DSPEPE-TMSSSERAMRHGQLKQLKDLRRQYKQ 502

Query: 176 KAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLS 235
           KA E  KRRK LK D  +EI +E++       + +D  ++EFR+ +D  +++       +
Sbjct: 503 KAAEDAKRRKRLKVD-TWEIGDEDD-------DVIDVRDIEFRMTNDAARIRALISGAST 554

Query: 236 S--YDILILDEVHERHLY 251
           S   D+++L  V  R LY
Sbjct: 555 SGGQDLVMLKIVLCRALY 572


>gi|351697953|gb|EHB00872.1| Putative ATP-dependent RNA helicase DHX34 [Heterocephalus glaber]
          Length = 1151

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 266/502 (52%), Positives = 355/502 (70%), Gaps = 16/502 (3%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y+VL++DE+HER LH DFLLGV++ LL +  ++K+ILMSATINIELF +YF   A +
Sbjct: 270 LPQYNVLIVDEVHERQLHSDFLLGVLRRLLPTRPDLKVILMSATINIELFSSYFGN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +K+EKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVIYQPQEAEQTASKTEKLDPRPFLRVLEAIDSKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++ AAQ Y   +Q W+VLPLHSTLS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEAAQTYAIHTQRWVVLPLHSTLSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFV+DSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVCYRLY+E  
Sbjct: 449 IDGIRFVLDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           + E +T +G  L+ LPVD+ +GKML+ GS F  ++ VL++AA LSVQSPFT  A    +C
Sbjct: 569 ASEALTPIGCLLAQLPVDVVIGKMLILGSTFSLVEPVLTIAAALSVQSPFTRSAQSSLEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ LES+ GDP T+ N +  W+ VK +  R S+KWC+RRG+EE R YE+  LR QFK
Sbjct: 629 AAARRPLESDQGDPFTLFNVFNAWVQVKAEHSRISRKWCRRRGVEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLI--TDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAY 792
           ++L D GL     +  P  S S   R  +  E + L  +KR+  E   +RRK+L+     
Sbjct: 689 ELLEDHGLQAGAQVVRPRDSYS---RLQQRRERRALHQLKRQHEEGKGRRRKVLRL---- 741

Query: 793 EIEEEEEEEEGERLESRTGPGV 814
               +EE ++G   E R GP  
Sbjct: 742 ----QEEADDGSSDEDRAGPAA 759



 Score =  171 bits (434), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 103/139 (74%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF QK+ F  L K++  + +LP+AQY+  I+  + + +VV++A
Sbjct: 125 LPPERVSEFRQALLHYLDFSQKQAFGRLAKLQRERAALPIAQYRNRILQMLKQHQVVVVA 184

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+  GF  +ACTQPRRIAC+SL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 185 GDTGCGKSTQVPQYLLAGGFSHVACTQPRRIACVSLAKRVGFESLSQYGSQVGYQIRFES 244

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 245 TRSVATKIVFLTVGLLLRQ 263



 Score =  137 bits (344), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 132/264 (50%), Gaps = 41/264 (15%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S + + +LK++LA GLYPQ+A+ D  N+     + +FH + K    LHP  +FT  P+VL
Sbjct: 793  SREQLALLKLVLARGLYPQLAVPDPLNSGRKDSDQIFHTQAKQGAVLHPTCIFTGSPEVL 852

Query: 1250 RISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSA 1309
               E +      G     ++ +SSKHQLL ++SLLET+K +LVNC+R+PALQ+LLLFS +
Sbjct: 853  HTWEPEATGG--GGSRGDKDKMSSKHQLLTFVSLLETNKLYLVNCVRIPALQSLLLFSRS 910

Query: 1310 IHTNSDFTRLVFDSWIEVFVPLQEAK--------------STADVNQLEH---------- 1345
            + TN D +RLV D W+E+ +   E                 +A   QL H          
Sbjct: 911  LDTNGDCSRLVADGWLELQLVDSEGAVRLLAAALRLRARWESALDQQLSHQAWQRQRLEE 970

Query: 1346 -------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGSNPF 1392
                         +L+R+L+QF+  AT + YS+RRL   + + +Y         P     
Sbjct: 971  EDEAALISHTEVAALSRELLQFV--ATKVPYSLRRLTGLEAQNLYVGPQTILATPSLPGL 1028

Query: 1393 VAEFPMVVEETLGGVRVTPYLVYD 1416
                 +    T GG  VT +L Y+
Sbjct: 1029 FGSSTLSPHPTKGGYSVTSFLTYN 1052



 Score =  130 bits (328), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 98/157 (62%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  +
Sbjct: 494 RTGPGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+D+ E +T +G  L+ LPVD+ +GKML+ GS F  ++ +L +  AL+
Sbjct: 554 LETAILYLRDQGALDASEALTPIGCLLAQLPVDVVIGKMLILGSTFSLVEPVLTIAAALS 613

Query: 929 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 965
             +  ++   +SL    +  P++   G      ++F+
Sbjct: 614 VQSPFTRSAQSSLECAAARRPLESDQGDPFTLFNVFN 650



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HER LH DFLLGV++ LL +  ++K+ILMSATINIELF +Y
Sbjct: 263  QIQHEPSLPQYNVLIVDEVHERQLHSDFLLGVLRRLLPTRPDLKVILMSATINIELFSSY 322

Query: 1175 FN 1176
            F 
Sbjct: 323  FG 324



 Score = 49.7 bits (117), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 49/86 (56%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
            GA+D+ E +T +G  L+ LPVD+ +GKML+ GS F  ++ +L +  AL+  +  ++   +
Sbjct: 565  GALDASEALTPIGCLLAQLPVDVVIGKMLILGSTFSLVEPVLTIAAALSVQSPFTRSAQS 624

Query: 1040 SLGRFLSDLPVDIPLGKMLVFGSMFH 1065
            SL    +  P++   G      ++F+
Sbjct: 625  SLECAAARRPLESDQGDPFTLFNVFN 650



 Score = 48.1 bits (113), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+D+ E +T +G  L+ LPVD+ +GKML+ GS F  ++ +L +  AL+    F   ++ 
Sbjct: 565  GALDASEALTPIGCLLAQLPVDVVIGKMLILGSTFSLVEPVLTIAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  SLECAAARRPLES 637



 Score = 43.5 bits (101), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHER L+ DFLLGV+
Sbjct: 263 QIQHEPSLPQYNVLIVDEVHERQLHSDFLLGVL 295


>gi|348543417|ref|XP_003459180.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like
           [Oreochromis niloticus]
          Length = 1143

 Score =  537 bits (1383), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 265/509 (52%), Positives = 361/509 (70%), Gaps = 6/509 (1%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  D+ L+ Y V+++DE+HERHLH DFLLGV++ LL    ++++ILMSATINI+LF  Y
Sbjct: 254 QIQQDSTLARYQVVIVDEVHERHLHCDFLLGVLRSLLADRPDLRLILMSATINIKLFSNY 313

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIV-ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           F+  A +++VPGRL+PIQ+ Y PI  E   +KSEKLDP PY+RIL  ID++YP  ERGD+
Sbjct: 314 FSG-APVLQVPGRLFPIQVIYQPIPPEEQSSKSEKLDPRPYLRILQGIDQRYPPEERGDL 372

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG++EIS+I  A Q Y   ++ WI+L LHSTLS+ +QD+VF  AP G+RKCI+STN
Sbjct: 373 LLFLSGVAEISTIQEACQIYATHTRRWIILTLHSTLSIAQQDKVFDIAPPGVRKCIISTN 432

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDG+RFVVDSGKVKEMS+D  AKM  LQEFWIS+AS+EQRKGRAGRTGPGVCY
Sbjct: 433 IAETSVTIDGVRFVVDSGKVKEMSFDPKAKMQRLQEFWISRASSEQRKGRAGRTGPGVCY 492

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE  Y+  A Y  PEI RV++DSL+L +  M LGD   F F++ PPA +I+++V  L
Sbjct: 493 RLYSESDYNAFAPYPVPEIHRVALDSLILQMKSMSLGDPLSFVFIDPPPAASIQNAVFYL 552

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GA+DS+  +TS+G  L+ LPVD+ +GKMLV G +F+ ++ VL++AA LSVQSPF   
Sbjct: 553 KEQGALDSRGELTSIGSLLAQLPVDVVIGKMLVLGCLFNLVEPVLTVAAALSVQSPFLRS 612

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDR-VRSKKWCKRRGIEEQRFYEVT 727
           +  +PDC TAR+ L SN GDP T+LN +  W+ VK++R   S+KWC+RRG+EEQR YE+ 
Sbjct: 613 SQHNPDCATARQPLHSNQGDPFTLLNTFNAWVEVKRERGGGSRKWCRRRGLEEQRLYEMV 672

Query: 728 KLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
            LR QFK +L    L+       +     +R  R  E + L  +KR   ++   +RK+LK
Sbjct: 673 NLRRQFKDLLRSHSLLESEDSTPSGGDRVQRRERLTERRKLHQLKRDHEQQEGSKRKVLK 732

Query: 788 ADNAYEIE---EEEEEEEGERLESRTGPG 813
            +   E +     + EE G    ++ G G
Sbjct: 733 LEEGQEGDFSSGSDTEETGRSKRNKEGSG 761



 Score =  153 bits (387), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 101/130 (77%)

Query: 10  KLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKST 69
           +L L  +LDF QK+ F  L K+R  Q +LP+ QY+  I++ V    VV++AGDTGCGKST
Sbjct: 125 RLALLHFLDFSQKQSFGKLAKLRREQKNLPIFQYRDRIVELVRLHPVVVVAGDTGCGKST 184

Query: 70  QIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           Q+PQYL+ AGF  IACTQPRRIACISL+KRV++E+L+QY + VGYQIRFE  R   TK++
Sbjct: 185 QVPQYLLSAGFNNIACTQPRRIACISLAKRVSFESLNQYGSKVGYQIRFETSRTATTKLL 244

Query: 130 FITEGLLLRQ 139
           F+TEGLLLRQ
Sbjct: 245 FLTEGLLLRQ 254



 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 42/249 (16%)

Query: 1204 GLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGL 1263
            GLYPQ+A+ DE N++    + +FH ++K  V +HP SVF S P+VL++ E D  +  P  
Sbjct: 803  GLYPQLALPDEHNSTRKDSDQVFHTRNKQGVVIHPTSVFASDPEVLQVPEGDTGEMGPDR 862

Query: 1264 KLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDS 1323
            +       S+KHQLL +++LLET+KP+L NC+R+PALQ LLL ++ + TN+D TRLV D 
Sbjct: 863  R------DSTKHQLLAFVTLLETNKPYLSNCVRVPALQALLLVANTVDTNADCTRLVVDG 916

Query: 1324 WI------------------------EVFVPLQEAKSTADVNQLEHSLTRDLVQFMSSA- 1358
            W+                        E  +  Q  +++     +   ++R +VQ +S + 
Sbjct: 917  WLELELKEPEEALKVLSTALTLRAEWERLLQAQLGQNSTGGAAVGQGVSRRVVQKLSESL 976

Query: 1359 ------THLAYSIRRLLAADLKTMYRRTGAESGVPGS-----NPFVAEFPMVVEETLGGV 1407
                  T ++YS+RRL A   + +Y     ES +  +     NP         +   GG+
Sbjct: 977  VRFLLYTEVSYSLRRLSAFQTQNLYIGPQLESVLSNTKAGDLNPLFPGAEAKPDPIKGGL 1036

Query: 1408 RVTPYLVYD 1416
            RVT +  Y+
Sbjct: 1037 RVTNFFTYN 1045



 Score =  127 bits (318), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 85/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLYSE  Y+  A Y  PEI RV++DSL+L +  M LGD   F F++ PPA +
Sbjct: 485 RTGPGVCYRLYSESDYNAFAPYPVPEIHRVALDSLILQMKSMSLGDPLSFVFIDPPPAAS 544

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           I+++V  L + GA+DS+  +T++G  L+ LPVD+ +GKMLV G +F+ ++ +L +  AL+
Sbjct: 545 IQNAVFYLKEQGALDSRGELTSIGSLLAQLPVDVVIGKMLVLGCLFNLVEPVLTVAAALS 604



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 49/62 (79%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D+ L+ Y V+++DE+HERHLH DFLLGV++ LL    ++++ILMSATINI+LF  Y
Sbjct: 254  QIQQDSTLARYQVVIVDEVHERHLHCDFLLGVLRSLLADRPDLRLILMSATINIKLFSNY 313

Query: 1175 FN 1176
            F+
Sbjct: 314  FS 315



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 36/49 (73%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS+  +TS+G  L+ LPVD+ +GKMLV G +F+ ++ +L +  AL+
Sbjct: 556  GALDSRGELTSIGSLLAQLPVDVVIGKMLVLGCLFNLVEPVLTVAAALS 604



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 36/49 (73%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS+  +TS+G  L+ LPVD+ +GKMLV G +F+ ++ +L +  AL+
Sbjct: 556  GALDSRGELTSIGSLLAQLPVDVVIGKMLVLGCLFNLVEPVLTVAAALS 604



 Score = 47.4 bits (111), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 27/33 (81%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  D+ L+ Y ++I+DEVHERHL+ DFLLGV+
Sbjct: 254 QIQQDSTLARYQVVIVDEVHERHLHCDFLLGVL 286


>gi|440901766|gb|ELR52652.1| Putative ATP-dependent RNA helicase DHX34 [Bos grunniens mutus]
          Length = 1149

 Score =  537 bits (1383), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/491 (52%), Positives = 348/491 (70%), Gaps = 6/491 (1%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K++LMSATINI LF +YF+  A +
Sbjct: 270 LPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVVLMSATINISLFSSYFSN-APV 328

Query: 377 IKVPGRLYPIQLEY--HPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMS 433
           ++VPGRL+PI   +   P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+S
Sbjct: 329 VQVPGRLFPITEAFVSQPQEAEPTTSKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLS 388

Query: 434 GISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETS 493
           G++EIS+++  AQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS
Sbjct: 389 GMAEISAVLEPAQAYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETS 448

Query: 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553
           +TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E
Sbjct: 449 VTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAE 508

Query: 554 EQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGA 613
             Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L   GA
Sbjct: 509 SDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPTSLETAILYLRDQGA 568

Query: 614 IDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDP 673
           +DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + VL++AA LSVQ+PFT  A  +P
Sbjct: 569 LDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQTPFTRSAQSNP 628

Query: 674 DCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQ 732
           +C   R+ LES+ GDP T+LN +  W+ VK +R R S+KWC  RGIEE R YE+  LR Q
Sbjct: 629 ECAATRRPLESDQGDPFTLLNVFNTWVQVKSERGRNSRKWCHHRGIEEHRLYEMANLRRQ 688

Query: 733 FKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAY 792
           FK++L + GL+     P     S  R  +  E + L  +KR+  E   ++RK+L+  +  
Sbjct: 689 FKELLENHGLLAGAQAPQPG-DSYSRLQQRRERQALYQLKRRHEEGVGRKRKVLRVQDDQ 747

Query: 793 EIEEEEEEEEG 803
           +    +E+  G
Sbjct: 748 DGWSSDEDRGG 758



 Score =  169 bits (429), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 101/132 (76%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY+  I+  + + +VV++AGDTGCGK
Sbjct: 132 EFRQALLHYLDFCQKQAFGRLAKLQRERAALPIAQYRHRILQMLKEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AG   +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLAAGCSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 114/194 (58%), Gaps = 22/194 (11%)

Query: 1184 SGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFT 1243
            S + A +   + +LK++L  GLYPQ+A+ D FN+S    + +FH + K  V LHP  VFT
Sbjct: 789  SSAQALTRDQMALLKLVLGRGLYPQLAVPDPFNSSRKDSDQIFHTQTKQGVVLHPTCVFT 848

Query: 1244 SQPDVLRISE------DDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRM 1297
            + P+VL   E      D   D         R+ +SSKHQL+ ++SLLET+KP+LVNC+R+
Sbjct: 849  NSPEVLHAQEQAARGSDGSRD--------DRDKMSSKHQLVTFVSLLETNKPYLVNCVRI 900

Query: 1298 PALQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAKSTADVNQLEHSLTRDLVQFMSS 1357
            PALQ+LLLFS ++ TN D +RLV D W+E    LQ A + + V  L  SL   L     S
Sbjct: 901  PALQSLLLFSRSLDTNGDCSRLVADGWLE----LQLADTESAVRLLAASLR--LRAHWES 954

Query: 1358 A--THLAYSIRRLL 1369
            A    LA+  RR L
Sbjct: 955  ALDRQLAHQARRRL 968



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 1/137 (0%)

Query: 792 YEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 851
           + I +   E+   R   RTGPGVC+RLY+E  Y   A Y  PEIRRV++D+L+L +  M 
Sbjct: 480 FWISQASAEQRKGR-AGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMS 538

Query: 852 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
           +GD R FPF+E PP  ++E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ G
Sbjct: 539 VGDPRTFPFIEPPPPTSLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILG 598

Query: 912 SMFHQIDTMLLLDLALN 928
           SMFH  + +L +  AL+
Sbjct: 599 SMFHLAEPVLTIAAALS 615



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K++LMSATINI LF +Y
Sbjct: 263  QMQREPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVVLMSATINISLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + +L +  AL+    F   ++ 
Sbjct: 567  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQTPFTRSAQS 626

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 627  NPECAATRRPLES 639



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + +L +  AL+
Sbjct: 567  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALS 615



 Score = 45.4 bits (106), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QMQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 295


>gi|348557698|ref|XP_003464656.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Cavia
           porcellus]
          Length = 1156

 Score =  536 bits (1382), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 262/502 (52%), Positives = 353/502 (70%), Gaps = 16/502 (3%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HER LH DFLLGV++ LL +  ++K++LMSATINI LF +YF   A +
Sbjct: 270 LPQYKVLIVDEVHERQLHNDFLLGVLQHLLPTRPDLKVVLMSATINIMLFSSYFGN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSE+LDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVIYQPQEAEQTASKSERLDPRPFLRVLEAIDNKYPAEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EI +++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEIGAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVCYRLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y     Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E++++ L + GA+D
Sbjct: 509 YDAFTPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASLETAIQYLQEQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           + E +T +G  L+ LPVD+ +GKML+ GSMF   + VL++AA LSVQSPF   A    +C
Sbjct: 569 ASEALTPIGCLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFPRSAQSSLEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ L+S+ GDP T+ N +  W+ VK +R + S+KWC+RRG+EE R YE+  LR QFK
Sbjct: 629 AAARQPLDSDQGDPFTLFNVFNAWVQVKAERSQNSRKWCRRRGVEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLITDIPGPDASL--SSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAY 792
            +L D GL+    G +A+    S  R  +  E + L  +KR+  E A +RRK+L+     
Sbjct: 689 DLLEDHGLLA---GAEAATPGDSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLRL---- 741

Query: 793 EIEEEEEEEEGERLESRTGPGV 814
               +EE E+G   E   GP  
Sbjct: 742 ----QEEAEDGSSDEDHAGPAA 759



 Score =  177 bits (448), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 107/139 (76%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF QK+ F+ L K++  + +LP+AQY++ I+ T+ + +VV++A
Sbjct: 125 LPPKRVSEFRRALLHYLDFSQKQAFTRLAKLQRDRAALPIAQYRKCILQTLKQHQVVVVA 184

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 185 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 244

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 245 TRSAATKIVFLTVGLLLRQ 263



 Score =  143 bits (360), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 93/274 (33%), Positives = 136/274 (49%), Gaps = 53/274 (19%)

Query: 1192 KDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRI 1251
            + + +LK++LA GLYPQ+A+ D FN+     + +FH + K    LHP SVF S P++L +
Sbjct: 795  EQLVLLKLVLARGLYPQLAVPDPFNSGRKDSDQIFHTQAKQGAVLHPTSVFASSPELLHV 854

Query: 1252 SEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIH 1311
             E        G     ++ +SSKHQLL ++SLLET+K +LVNC+R+PALQ+LLLFS ++ 
Sbjct: 855  QEPQATCG--GGSRDDKDKMSSKHQLLTFVSLLETNKLYLVNCVRVPALQSLLLFSRSLD 912

Query: 1312 TNSDFTRLVFDSWIEVFVPLQEAK--------------STADVNQLEH------------ 1345
            TN D +RLV DSW+E+ V   E                 +A   QL H            
Sbjct: 913  TNGDCSRLVADSWLELQVVDSEGAVQLLAAALRLRACWESALDRQLSHQARWRRREQQQR 972

Query: 1346 -----------------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGA 1382
                                   +L+R+L+QFM  AT + YS+RRL   + + +Y     
Sbjct: 973  RQRLGEEDEDEEEAESVSRAEVAALSRELLQFM--ATKVPYSLRRLTGLEAQNLYVGPQT 1030

Query: 1383 ESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
             +  P          +    T GG RVT +L Y+
Sbjct: 1031 VTATPKLPGLFGSSALSPHPTKGGYRVTNFLTYN 1064



 Score =  133 bits (335), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 104/174 (59%), Gaps = 1/174 (0%)

Query: 792 YEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 851
           + I +   E+   R   RTGPGVCYRLY+E  Y     Y  PEIRRV++D+L+L +  M 
Sbjct: 478 FWISQASAEQRKGR-AGRTGPGVCYRLYAESDYDAFTPYPVPEIRRVALDALVLQMKSMS 536

Query: 852 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
           +GD R FPF+E PP  ++E++++ L + GA+D+ E +T +G  L+ LPVD+ +GKML+ G
Sbjct: 537 VGDPRTFPFIEPPPPASLETAIQYLQEQGALDASEALTPIGCLLAQLPVDVVIGKMLILG 596

Query: 912 SMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 965
           SMF   + +L +  AL+  +   +   +SL    +  P+D   G      ++F+
Sbjct: 597 SMFSLAEPVLTIAAALSVQSPFPRSAQSSLECAAARQPLDSDQGDPFTLFNVFN 650



 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HER LH DFLLGV++ LL +  ++K++LMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYKVLIVDEVHERQLHNDFLLGVLQHLLPTRPDLKVVLMSATINIMLFSSY 322

Query: 1175 FN 1176
            F 
Sbjct: 323  FG 324



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
            GA+D+ E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+  +   +   +
Sbjct: 565  GALDASEALTPIGCLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFPRSAQS 624

Query: 1040 SLGRFLSDLPVDIPLGKMLVFGSMFH 1065
            SL    +  P+D   G      ++F+
Sbjct: 625  SLECAAARQPLDSDQGDPFTLFNVFN 650



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 34/49 (69%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+D+ E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 565  GALDASEALTPIGCLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 613



 Score = 42.7 bits (99), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHER L+ DFLLGV+
Sbjct: 263 QIQREPSLPQYKVLIVDEVHERQLHNDFLLGVL 295


>gi|311257808|ref|XP_003127294.1| PREDICTED: probable ATP-dependent RNA helicase DHX34 [Sus scrofa]
          Length = 1146

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/493 (53%), Positives = 350/493 (70%), Gaps = 12/493 (2%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSAT+N  LF  YF + A +
Sbjct: 270 LPQYRVLIVDEVHERHLHNDFLLGVLQRLLPRRPDLKVILMSATVNTSLFSAYFGQ-APV 328

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKS--EKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
           ++VPGRL+PI + Y P  E + T S  EKLDP P+IR+L  ID KYP  ERGD+L+F+SG
Sbjct: 329 VQVPGRLFPITVVYQP-QEAEPTASTLEKLDPRPFIRVLEAIDSKYPPEERGDLLVFLSG 387

Query: 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494
           ++EI +++ AAQ +  +S  W+VLPLHSTLS+  QD+VF  AP G+RKCI+STNIAETS+
Sbjct: 388 LAEIGAVLEAAQAHARRSGRWVVLPLHSTLSVAAQDKVFDVAPPGVRKCILSTNIAETSV 447

Query: 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554
           TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E 
Sbjct: 448 TIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAES 507

Query: 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAI 614
            Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PPA ++E+++  L   GA+
Sbjct: 508 DYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPAASLETAILYLRDQGAL 567

Query: 615 DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPD 674
           D  E +T +G  L+ LPVDI +GKMLV GS+ H  + VL++AA LSVQSPFT     +P 
Sbjct: 568 DGSEALTPIGSLLAQLPVDIVIGKMLVLGSVLHLAEPVLTIAAALSVQSPFTRSTRSNPK 627

Query: 675 CETARKELESNHGDPLTVLNAYKEWLGVKKDR-VRSKKWCKRRGIEEQRFYEVTKLRSQF 733
           C  A + LES+HGDP T+ N +  W+ VK DR  +S++WC+R GIEE R YE+  LR QF
Sbjct: 628 C--AWRALESDHGDPFTLFNVFNNWVQVKSDRSTKSRRWCRREGIEEHRLYEMANLRRQF 685

Query: 734 KQVLGDSGLI--TDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNA 791
           K++L D GL+  T  P P  S S   R  +H E + L  +KR+  E A +RRK+L+    
Sbjct: 686 KELLEDHGLLAGTQAPKPGDSYS---RLRQHRERQELYQLKRQHEEGAGRRRKVLRLQED 742

Query: 792 YEIEEEEEEEEGE 804
            +    +E+  G+
Sbjct: 743 QDGGSSDEDWGGD 755



 Score =  170 bits (431), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 78/138 (56%), Positives = 104/138 (75%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF QK+ F+ L +++  + +LP++QY+  I+ T+ + +VV++A
Sbjct: 125 LPPERVSEFRGALLHYLDFGQKQAFARLARLQRERAALPISQYRDRILQTLKEHQVVVVA 184

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV  E+LSQY + VGYQIRFE 
Sbjct: 185 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGLESLSQYGSQVGYQIRFES 244

Query: 121 HRREKTKIVFITEGLLLR 138
            R   TKIVF+T GLLLR
Sbjct: 245 TRSAATKIVFLTVGLLLR 262



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 141/278 (50%), Gaps = 45/278 (16%)

Query: 1180 KDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPF 1239
            ++  S +  R+   +T+LK++LA GLYPQ AI D FN+S    + +FH + K    LHP 
Sbjct: 780  QEAASSAQVRTRDQMTLLKLVLARGLYPQFAIPDPFNSSRKDSDQIFHTQAKQGAVLHPT 839

Query: 1240 SVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPA 1299
             VF + P+VL   E +  +         R+ +SSKHQLL ++SLLETSKP+LVNC+R+PA
Sbjct: 840  CVFANSPEVLHPQEPEATEGKGSQD--NRDPMSSKHQLLAFVSLLETSKPYLVNCVRVPA 897

Query: 1300 LQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAK------------------------ 1335
            LQ+LLLFS ++ TN D +RLV D W+E+ +   E+                         
Sbjct: 898  LQSLLLFSRSLDTNGDCSRLVADGWLELQLADGESAVRLLAATLRLRAQWESAMDGQLAQ 957

Query: 1336 ------STADVNQLEH-----------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYR 1378
                     D N+ E            +L+++L+QFM  A+ ++YS+RRL   +++ +Y 
Sbjct: 958  ARRRRRQRLDDNEEEEAAPGQREEVVVALSKELLQFM--ASKVSYSLRRLTGLEVQNLYV 1015

Query: 1379 RTGAESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
                 +  P               T GG  VT +L Y+
Sbjct: 1016 GPQTITAAPSLPGLFGSSATSPHPTKGGYAVTDFLTYN 1053



 Score =  130 bits (328), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 83/120 (69%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PPA +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPAAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+D  E +T +G  L+ LPVDI +GKMLV GS+ H  + +L +  AL+
Sbjct: 554 LETAILYLRDQGALDGSEALTPIGSLLAQLPVDIVIGKMLVLGSVLHLAEPVLTIAAALS 613



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 42/56 (75%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR 1177
            L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSAT+N  LF  YF +
Sbjct: 270  LPQYRVLIVDEVHERHLHNDFLLGVLQRLLPRRPDLKVILMSATVNTSLFSAYFGQ 325



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 33/49 (67%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+D  E +T +G  L+ LPVDI +GKMLV GS+ H  + +L +  AL+
Sbjct: 565  GALDGSEALTPIGSLLAQLPVDIVIGKMLVLGSVLHLAEPVLTIAAALS 613



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 33/49 (67%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+D  E +T +G  L+ LPVDI +GKMLV GS+ H  + +L +  AL+
Sbjct: 565  GALDGSEALTPIGSLLAQLPVDIVIGKMLVLGSVLHLAEPVLTIAAALS 613



 Score = 44.3 bits (103), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 228 VATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           V  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 264 VQREPTLPQYRVLIVDEVHERHLHNDFLLGVL 295



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 10/127 (7%)

Query: 137 LRQDSGLI--TDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYE 194
           L +D GL+  T  P P  S S   R  +H E + L  +KR+  E A +RRK+L+     +
Sbjct: 688 LLEDHGLLAGTQAPKPGDSYS---RLRQHRERQELYQLKRQHEEGAGRRRKVLRLQEDQD 744

Query: 195 IEEEEEEEEGERLES---MDANEVEFRLKHDPKQVQVATDN--FLSSYDILILDEVHERH 249
               +E+  G+  +    +D  +V+F+L+HD +Q+Q A  +    +   + +L  V  R 
Sbjct: 745 GGSSDEDWGGDTSQGAGDVDIQDVKFKLRHDLEQLQEAASSAQVRTRDQMTLLKLVLARG 804

Query: 250 LYGDFLL 256
           LY  F +
Sbjct: 805 LYPQFAI 811


>gi|149722228|ref|XP_001503207.1| PREDICTED: probable ATP-dependent RNA helicase DHX34 [Equus
           caballus]
          Length = 1147

 Score =  534 bits (1376), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 261/477 (54%), Positives = 343/477 (71%), Gaps = 12/477 (2%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K++LMSATINI LF +YF   A +
Sbjct: 270 LPQYQVLIVDEVHERHLHNDFLLGVLRRLLPQRPDLKVVLMSATINISLFSSYFGD-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLEAIDSKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEAAQPYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMS D  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSCDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GS F   + VL++AA LSVQSPFT  A  +P+C
Sbjct: 569 SSEALTPIGSLLAQLPVDVVIGKMLILGSTFCLAEPVLTIAAALSVQSPFTRSAQGNPEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDR-VRSKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ LES+ GDP T+ N +  W+ VK +R   S+KWC+RRGIEE R YE+  LR QFK
Sbjct: 629 AAARRPLESDQGDPFTLFNIFNAWVQVKCERSSNSRKWCRRRGIEEHRLYEMANLRRQFK 688

Query: 735 QVLGDSGLITDI----PGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
           ++L D GL+       PG D+    R+R  R    +L    KR+  E   +RRK+L+
Sbjct: 689 ELLEDHGLLAGAQALEPG-DSYSRLRQRRERQALFQL----KRQHEEGGARRRKVLR 740



 Score =  173 bits (439), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 103/132 (78%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L +++  + +LP+AQY   I+ T+ + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLARLQRERAALPIAQYASRILQTLERHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV++E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVSFESLSQYGSQVGYQIRFESTRSPATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  141 bits (355), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 139/281 (49%), Gaps = 60/281 (21%)

Query: 1184 SGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFT 1243
            S + A S + + +LK++LA GLYPQ+A  D FN+     + +FH + K    LHP  VF 
Sbjct: 786  SAAQALSREQLALLKLVLARGLYPQLAAPDPFNSGRKDSDQIFHTQAKQGAVLHPTCVFA 845

Query: 1244 SQPDVLRISEDDIVDPPPGLKLPG----RNVISSKHQLLVYMSLLETSKPFLVNCLRMPA 1299
            S P+VL   E      P      G    ++ +SS+HQLL ++SLLET+KP+LVNC+R+PA
Sbjct: 846  SSPEVLHTRE------PEARGGEGSRDDKDKMSSRHQLLAFVSLLETTKPYLVNCVRVPA 899

Query: 1300 LQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAKSTADVNQL---------------- 1343
            LQ+LLLFS ++ TN D +RLV D W+E    LQ A S + V  L                
Sbjct: 900  LQSLLLFSRSLDTNGDCSRLVADGWLE----LQLADSESAVGLLAASLRLRTRWEQVLAR 955

Query: 1344 ----------------------------EHSLTRDLVQFMSSATHLAYSIRRLLAADLKT 1375
                                        E +L+R+L++F  +A+ + YS+RRL+  +++ 
Sbjct: 956  QLARQARRRPEEEEEDEDEEEAAVHRREEAALSRELLRF--AASQVPYSLRRLMGLEIQN 1013

Query: 1376 MYRRTGAESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
            +Y      +  P          +    T GG  VT +L Y+
Sbjct: 1014 LYVGPQTITAAPSLPGLFGSSTLSPHPTKGGYAVTDFLTYN 1054



 Score =  127 bits (319), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 82/120 (68%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GS F   + +L +  AL+
Sbjct: 554 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSTFCLAEPVLTIAAALS 613



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K++LMSATINI LF +Y
Sbjct: 263  QLQREPRLPQYQVLIVDEVHERHLHNDFLLGVLRRLLPQRPDLKVVLMSATINISLFSSY 322

Query: 1175 FN 1176
            F 
Sbjct: 323  FG 324



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GS F   + +L +  AL+    F   ++ 
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSTFCLAEPVLTIAAALSVQSPFTRSAQG 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  NPECAAARRPLES 637



 Score = 48.1 bits (113), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GS F   + +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSTFCLAEPVLTIAAALS 613



 Score = 45.4 bits (106), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QLQREPRLPQYQVLIVDEVHERHLHNDFLLGVL 295


>gi|156390342|ref|XP_001635230.1| predicted protein [Nematostella vectensis]
 gi|156222321|gb|EDO43167.1| predicted protein [Nematostella vectensis]
          Length = 1226

 Score =  531 bits (1367), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 278/566 (49%), Positives = 369/566 (65%), Gaps = 93/566 (16%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           LS Y+V+V+DE+HERHLHGDFLLG+++C++   A +K++LMSATINI+LF  YF   A +
Sbjct: 267 LSRYNVVVVDEVHERHLHGDFLLGMLRCIIEGRANLKLVLMSATINIDLFAGYFEG-APV 325

Query: 377 IKVPGRLYPIQLEYH---------PIVELDR----------------------------- 398
           I+VPGRLYPIQ++Y          P    +R                             
Sbjct: 326 IQVPGRLYPIQVQYQAPAAEKQKAPTSRTERLDPSPYLKIMQLIDYKVPGRLYPIQVQYQ 385

Query: 399 -----------TKSEKLDPGPYIRILSIIDKK-------YPRTERGDVLIFMSGISEISS 440
                      +++E+LDP PY++I+ +ID K       YP TERGD+LIF+SG+SEIS+
Sbjct: 386 APAAEKQKAPTSRTERLDPSPYLKIMQLIDYKNSCKRVRYPPTERGDLLIFLSGMSEISA 445

Query: 441 IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR 500
           +V AA+EY ++++ WIVLPLHS+LS++EQD+VF  AP+G+RKCIVSTNIAETSITIDGIR
Sbjct: 446 VVDAAREYAQRTRRWIVLPLHSSLSVDEQDKVFDVAPDGVRKCIVSTNIAETSITIDGIR 505

Query: 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRA--------------------- 539
           F+ DSGKVKEMS+D  AKM  LQEFWIS+ASAEQRKGRA                     
Sbjct: 506 FIADSGKVKEMSFDNKAKMQRLQEFWISQASAEQRKGRAGRTDPCVCLNLIIMKDHVPLE 565

Query: 540 GRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 599
           GRTGPGVCYRLY++  Y   +EY+TPEI+R  +DS +L +V MG+ DVR FPF+E PP  
Sbjct: 566 GRTGPGVCYRLYTQSDYHAFSEYATPEIQRAPLDSTVLQMVAMGINDVRAFPFIEPPPRS 625

Query: 600 NIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVL 659
           +IE+SV  L Q GA+   E +T +G+ LS LPVD+ +GKML+ GS+FH  D V+ +AA L
Sbjct: 626 SIENSVHFLQQQGALTEDEAITPVGQMLSRLPVDVVIGKMLLMGSVFHVTDPVMIIAAGL 685

Query: 660 SVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVK-KDRVRSKKWCKRRGI 718
           SVQSP+T R   DPD    RKELES+HGDP T+LNAY EW+ VK +    SKKWC+RRG+
Sbjct: 686 SVQSPWTRRLDHDPDVMALRKELESDHGDPFTLLNAYDEWIQVKSRQGSGSKKWCRRRGL 745

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLIT-DIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           EEQRFYE++KL+ QF+ +L D GLI  +               +  ++K L    +++ +
Sbjct: 746 EEQRFYEMSKLKRQFEDLLVDHGLIQRETKDDSDDDEREREKYKRRQLKRL----KREHQ 801

Query: 778 EAPKRRKMLKADNAYEIEEEEEEEEG 803
            + +RRK+LK          EE+EEG
Sbjct: 802 TSTRRRKLLKL---------EEDEEG 818



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/135 (56%), Positives = 105/135 (77%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           ++ A   E++ +L  Y+DF QK+KF+ L K++  Q +LP++Q++Q+I+D V   +VVIIA
Sbjct: 133 LTEANIAEFRSVLLYYIDFCQKQKFNKLAKLKRDQTNLPISQFRQQIVDAVKNHQVVIIA 192

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  IACTQPRRIACISL+KRV +ETL++Y + V YQIRFE 
Sbjct: 193 GDTGCGKSTQVPQYLLHAGFTEIACTQPRRIACISLAKRVGFETLNEYGSEVAYQIRFEG 252

Query: 121 HRREKTKIVFITEGL 135
            +   T+I+F+TE L
Sbjct: 253 SKTSATRILFLTEDL 267



 Score =  150 bits (380), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/274 (33%), Positives = 145/274 (52%), Gaps = 54/274 (19%)

Query: 1192 KDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRI 1251
            +D+ +LK+IL SGLYP +AI D+ N  +   E  FH + K  + LHP SVF + PDVL+ 
Sbjct: 855  RDINLLKIILCSGLYPNLAIADDTNCWKRDTEQTFHTQSKSSLLLHPTSVFATNPDVLKP 914

Query: 1252 SEDDIVDPPPGLK--LPGRNV-------ISSKHQLLVYMSLLETSKPFLVNCLRMPALQT 1302
             +D  +  PP  +    G+ +        S+ HQLL Y+SLLET+KP+LVN +R+P LQT
Sbjct: 915  PQD--IGAPPSQEDVKSGKRLRDSLDLTYSTSHQLLAYVSLLETNKPYLVNSMRVPGLQT 972

Query: 1303 LLLFSSAIHTNSDFTRLVFDSWIEVFVP--------------------------LQEAKS 1336
            L+LF+ ++ TN+D TR++ D+W+EV +P                          L   +S
Sbjct: 973  LMLFARSLDTNADLTRVIADTWLEVRLPDAKTAQSAMSAVIQLRSTWMRLLQLRLDAKRS 1032

Query: 1337 TADVNQLEHSLTRDLVQFMSSA------THLAYSIRRLLAADLKTMYR--------RTGA 1382
             ++   LE +  RDL + ++        +++ +S RRLL ++ + +Y+           A
Sbjct: 1033 GSETGLLEMNKCRDLERALAKKLSEFLDSNIRFSTRRLLPSEDQHLYKGLMDSDDFDLTA 1092

Query: 1383 ESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
            E  +P   P     P+ V  T GG+RV  YL Y+
Sbjct: 1093 EGILPFQGPST---PLEVHPTKGGIRVNEYLTYN 1123



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 88/123 (71%)

Query: 806 LESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 865
           LE RTGPGVCYRLY++  Y   +EY+TPEI+R  +DS +L +V MG+ DVR FPF+E PP
Sbjct: 564 LEGRTGPGVCYRLYTQSDYHAFSEYATPEIQRAPLDSTVLQMVAMGINDVRAFPFIEPPP 623

Query: 866 AENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
             +IE+SV  L Q GA+   E +T +G+ LS LPVD+ +GKML+ GS+FH  D ++++  
Sbjct: 624 RSSIENSVHFLQQQGALTEDEAITPVGQMLSRLPVDVVIGKMLLMGSVFHVTDPVMIIAA 683

Query: 926 ALN 928
            L+
Sbjct: 684 GLS 686



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 47/54 (87%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            LS Y+V+V+DE+HERHLHGDFLLG+++C++   A +K++LMSATINI+LF  YF
Sbjct: 267  LSRYNVVVVDEVHERHLHGDFLLGMLRCIIEGRANLKLVLMSATINIDLFAGYF 320



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+   E +T +G+ LS LPVD+ +GKML+ GS+FH  D ++++   L+
Sbjct: 638  GALTEDEAITPVGQMLSRLPVDVVIGKMLLMGSVFHVTDPVMIIAAGLS 686



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+   E +T +G+ LS LPVD+ +GKML+ GS+FH  D ++++   L+
Sbjct: 638  GALTEDEAITPVGQMLSRLPVDVVIGKMLLMGSVFHVTDPVMIIAAGLS 686



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 25/26 (96%)

Query: 234 LSSYDILILDEVHERHLYGDFLLGVI 259
           LS Y+++++DEVHERHL+GDFLLG++
Sbjct: 267 LSRYNVVVVDEVHERHLHGDFLLGML 292


>gi|449687082|ref|XP_002170151.2| PREDICTED: probable ATP-dependent RNA helicase DHX34-like, partial
           [Hydra magnipapillata]
          Length = 1067

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 272/482 (56%), Positives = 364/482 (75%), Gaps = 13/482 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           +  +D  LS YDV+V+DE+HERH++GDFLLGV+KCLL   +++K+ILMSATINI+LF +Y
Sbjct: 180 QFQSDPNLSMYDVVVVDEVHERHINGDFLLGVLKCLLQHRSDLKLILMSATINIDLFASY 239

Query: 370 FNRIAKIIKVPGRLYPIQLEY--HPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           F+  A +I+VPGRLYPI+L+Y  H   EL + K ++LDP PY++++ +IDKKYP +ERGD
Sbjct: 240 FHD-APVIQVPGRLYPIELQYMQHFKSEL-KDKHDRLDPSPYLKVMQLIDKKYPSSERGD 297

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG+SEI+++V AA+EY  KS+ WI+LPLHS+LS+EEQD++F  AP+G+RKCIVST
Sbjct: 298 LLIFMSGMSEIAAVVEAAKEYAAKSKSWIILPLHSSLSVEEQDKIFDVAPDGVRKCIVST 357

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           NIAETSITIDG+RF+ DSGKVKEMSYD   KM  LQEFWIS+ASAEQRKGRAGRTGPGVC
Sbjct: 358 NIAETSITIDGVRFIADSGKVKEMSYDPQVKMQRLQEFWISQASAEQRKGRAGRTGPGVC 417

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
           +RLYSEE Y   + YSTPEI RV +D+L+L +  +GL D  +FPF+E P   ++ ++   
Sbjct: 418 FRLYSEEDYCEFSNYSTPEIHRVPLDTLVLHMASLGLRDATRFPFIEPPMKASLVNATYF 477

Query: 608 LTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTN 667
           L    A+++   +T LGR LS LPVDI +GKMLV GS+F  I+ +L +A  LSVQSP T 
Sbjct: 478 LKLQNALNTDGTLTPLGRMLSRLPVDIVIGKMLVMGSLFSIIEPILVIATALSVQSPLTK 537

Query: 668 RAFRDPD-CETARKELESNHGDPLTVLNAYKEWLGVKKD-RVRSKKWCKRRGIEEQRFYE 725
           R   + + C+  RKEL S HGDP T+L+AY EW+ VK D R  S+KWCK RG+EEQRFYE
Sbjct: 538 RFDSNAESCDIKRKELFSEHGDPFTLLSAYDEWIIVKSDRRSNSRKWCKHRGLEEQRFYE 597

Query: 726 VTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKM 785
           ++KL+ QF+ +L D GL   +   +   +S ER  R+  +KL    KR+ + ++ ++RK+
Sbjct: 598 MSKLKQQFEDLLIDHGL---MKKSNIQSNSIERDERNELLKL----KREHSLQSNRKRKV 650

Query: 786 LK 787
           LK
Sbjct: 651 LK 652



 Score =  176 bits (446), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 108/132 (81%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++ ++  YLDF QK+ FS L+K+++ QN+LP+ QY+Q I+  + + +VVI+AGDTGCGK
Sbjct: 49  EFQKVILYYLDFVQKKSFSKLLKLKQDQNNLPIKQYEQSIVYALQQNQVVIVAGDTGCGK 108

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+  G+  IACTQPRR+ACISL+KRV +ETL++Y + + YQ+RFE +R + TK
Sbjct: 109 STQVPQYLLLNGYSNIACTQPRRLACISLAKRVGFETLNEYKSDIAYQVRFETNRTKNTK 168

Query: 128 IVFITEGLLLRQ 139
           +VF+TEGLLLRQ
Sbjct: 169 VVFLTEGLLLRQ 180



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 143/266 (53%), Gaps = 44/266 (16%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            +H+D+ +LK+IL+SGLYPQ+A+ DE N      E +FH KDK F+ LHP SV++  PD L
Sbjct: 696  THRDIILLKLILSSGLYPQIAVPDETNPWRKQNEQVFHTKDKQFLMLHPTSVYSLHPDFL 755

Query: 1250 -RISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSS 1308
              +   D           GR + S   +LL+Y+SLLET+KP++VN  R+PALQTLLL SS
Sbjct: 756  ENLYNTDKASSTDKQTTDGRYIHS--RELLLYVSLLETNKPYIVNTARVPALQTLLLLSS 813

Query: 1309 AIHTNSDFTRLVFDSWIEV--------------FVPLQEA-------------------- 1334
            +I TNSD + LVFD+W+E+               V ++ A                    
Sbjct: 814  SIDTNSDCSTLVFDNWLEMSFETNFDTKLLISSVVQIRSAWDMLLEQKLCIYEDDDEKEI 873

Query: 1335 -KSTADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGSNPFV 1393
             K    + +LE+ +++ L +F+   T ++Y +RR+ +A++K M+ ++   + +   N   
Sbjct: 874  GKKLKSITKLENIVSQKLAEFID--TDISYKLRRISSAEIKHMFIKSLNPNNIDKENTED 931

Query: 1394 AE----FPMVVEETLGGVRVTPYLVY 1415
             +    F        GG+ VTPYL Y
Sbjct: 932  LQAHQLFSGKENSEKGGISVTPYLTY 957



 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 82/120 (68%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLYSEE Y   + YSTPEI RV +D+L+L +  +GL D  +FPF+E P   +
Sbjct: 411 RTGPGVCFRLYSEEDYCEFSNYSTPEIHRVPLDTLVLHMASLGLRDATRFPFIEPPMKAS 470

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           + ++   L    A+++   +T LGR LS LPVDI +GKMLV GS+F  I+ +L++  AL+
Sbjct: 471 LVNATYFLKLQNALNTDGTLTPLGRMLSRLPVDIVIGKMLVMGSLFSIIEPILVIATALS 530



 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 53/62 (85%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q  +D  LS YDV+V+DE+HERH++GDFLLGV+KCLL   +++K+ILMSATINI+LF +Y
Sbjct: 180  QFQSDPNLSMYDVVVVDEVHERHINGDFLLGVLKCLLQHRSDLKLILMSATINIDLFASY 239

Query: 1175 FN 1176
            F+
Sbjct: 240  FH 241



 Score = 48.9 bits (115), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
             A+++   +T LGR LS LPVDI +GKMLV GS+F  I+ +L++  AL+
Sbjct: 482  NALNTDGTLTPLGRMLSRLPVDIVIGKMLVMGSLFSIIEPILVIATALS 530



 Score = 48.9 bits (115), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
             A+++   +T LGR LS LPVDI +GKMLV GS+F  I+ +L++  AL+
Sbjct: 482  NALNTDGTLTPLGRMLSRLPVDIVIGKMLVMGSLFSIIEPILVIATALS 530


>gi|301775336|ref|XP_002923086.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DHX34-like [Ailuropoda melanoleuca]
          Length = 1138

 Score =  525 bits (1351), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/475 (54%), Positives = 341/475 (71%), Gaps = 10/475 (2%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF R A +
Sbjct: 269 LPQYQVLIVDEVHERHLHNDFLLGVLRRLLPERPDLKVILMSATINISLFSSYFGR-APV 327

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 328 VQVPGRLFPITVVYQPQEAEPAASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSGM 387

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EISS++ AAQ Y  ++Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 388 AEISSVLEAAQAYAGRTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 447

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEM YD  AK+  LQEFWIS+ASAE    RAGRTGPGVC+RLY+E  
Sbjct: 448 IDGIRFVVDSGKVKEMGYDPQAKLHRLQEFWISQASAE--XPRAGRTGPGVCFRLYAESD 505

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++ +L+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 506 YDAFAPYPVPEIRRVALHALVLQMKSMTVGDPRTFPFIEPPPPASLETAILYLRDQGALD 565

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GSMFH  + VL++AA LSVQSPFT  A   P+C
Sbjct: 566 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQSPFTRSAQSHPEC 625

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+ RG+EE R YE+  LR QFK
Sbjct: 626 AAARRPLESDQGDPFTLFNIFNAWVQVKSERSRNSRKWCRHRGVEEHRLYEMANLRRQFK 685

Query: 735 QVLGDSGLITDIPGPDASLS--SRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
           ++L D GL+       A++S  S  R     E + L  +KR+  E   +RRK+L+
Sbjct: 686 ELLEDHGLLARA---QAAMSGDSFRRLQERRERRALYRLKRQHEESGGRRRKVLR 737



 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 104/137 (75%)

Query: 3   PALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGD 62
           P    E++  L  YLDF QK+ F+ L K++  + +LP+AQY   I+ T+   +VV++AGD
Sbjct: 126 PERVSEFRRALLHYLDFGQKQAFARLAKLQHERAALPIAQYGNRILQTLKDHQVVVVAGD 185

Query: 63  TGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR 122
           TGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV++E+LSQY + VGYQIRFE  R
Sbjct: 186 TGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVSFESLSQYGSQVGYQIRFESTR 245

Query: 123 REKTKIVFITEGLLLRQ 139
              TKIVF+T GLLLRQ
Sbjct: 246 TAATKIVFLTVGLLLRQ 262



 Score =  144 bits (364), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 145/288 (50%), Gaps = 57/288 (19%)

Query: 1177 RIAKDLLSGSTARSHKDVT-----ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDK 1231
            R + D L  +T  S +D+T     +LK++L  GLYPQ+A+ D FN+S    + +FH + K
Sbjct: 767  RHSLDQLQAATG-SAQDLTREQMALLKLVLGRGLYPQLAVPDPFNSSRKDSDQIFHTQSK 825

Query: 1232 GFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFL 1291
                LHP  +F S P+VL   E +       +    ++ +SS+HQLL ++SLLET+KP+L
Sbjct: 826  QGTVLHPTCIFASSPEVLHTQEPEARGG--EVSRDDKDKLSSRHQLLAFVSLLETNKPYL 883

Query: 1292 VNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAKSTADVNQLEHS----- 1346
            VNC+R+PALQ+LLLFS ++ TN D +RLV D W+E    LQ A S + V  L  S     
Sbjct: 884  VNCVRVPALQSLLLFSRSLDTNGDCSRLVADGWLE----LQLADSESAVRLLAASVRLRA 939

Query: 1347 --------------------------------------LTRDLVQFMSSATHLAYSIRRL 1368
                                                  L+RDL+QF+  A+ + YS+RRL
Sbjct: 940  HWESILDRQLARQAQQRRPEADQEEAAGAPADRKEVADLSRDLLQFV--ASKVPYSLRRL 997

Query: 1369 LAADLKTMYRRTGAESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
               +++++Y      +  P         P+    T GG  VT +L Y+
Sbjct: 998  TGLEVQSLYVGPQTITTAPSLPGLFGSSPLSPHPTKGGYAVTDFLTYN 1045



 Score =  130 bits (327), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 83/120 (69%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++ +L+L +  M +GD R FPF+E PP  +
Sbjct: 491 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALHALVLQMKSMTVGDPRTFPFIEPPPPAS 550

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + +L +  AL+
Sbjct: 551 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALS 610



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 47/63 (74%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 262  QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLRRLLPERPDLKVILMSATINISLFSSY 321

Query: 1175 FNR 1177
            F R
Sbjct: 322  FGR 324



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + +L +  AL+    F   ++ 
Sbjct: 562  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQSPFTRSAQS 621

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 622  HPECAAARRPLES 634



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + +L +  AL+
Sbjct: 562  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALS 610



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 262 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 294


>gi|355683849|gb|AER97212.1| DEAH box polypeptide 34 [Mustela putorius furo]
          Length = 930

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/487 (54%), Positives = 344/487 (70%), Gaps = 18/487 (3%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF   A +
Sbjct: 45  LPQYQVLIVDEVHERHLHNDFLLGVLRRLLPQRPDLKVILMSATINISLFSSYFGN-APV 103

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGDVL+F+SG+
Sbjct: 104 VQVPGRLFPITVVYQPQEAEPPASKSEKLDPRPFLRVLEAIDNKYPPEERGDVLVFLSGM 163

Query: 436 SEISSIVRAAQEYN-------EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           +EISS++ AAQ Y         ++Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STN
Sbjct: 164 AEISSVLEAAQAYAGXPRASPARTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTN 223

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDGIRFVVDSGKVKEM YD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+
Sbjct: 224 IAETSVTIDGIRFVVDSGKVKEMGYDPQAKLHRLQEFWISQASAEQRKGRAGRTGPGVCF 283

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN-------I 601
           RLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  +       +
Sbjct: 284 RLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSMGDPRTFPFIEPPPPASNPPPPSSL 343

Query: 602 ESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
           E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ G MFH  + VL++AA LSV
Sbjct: 344 ETAILYLRDQGALDSSESLTPIGSLLAQLPVDVVIGKMLILGCMFHLAEPVLTIAAALSV 403

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEE 720
           QSPFT  A   P+C  AR+ LES+HGDP T+ N +  W+ VK +R R S+KWC+RRG+EE
Sbjct: 404 QSPFTRSAQSHPECAAARRPLESDHGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGVEE 463

Query: 721 QRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAP 780
            R YE+  LR QFK++L D GL+          SSR    R  E + L  +KR+  E   
Sbjct: 464 HRLYEMANLRRQFKELLEDHGLLARAQAATPGDSSRRLQERR-ERRELYRLKRQHEEGGG 522

Query: 781 KRRKMLK 787
           +RRK+L+
Sbjct: 523 RRRKVLR 529



 Score =  140 bits (354), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 145/288 (50%), Gaps = 57/288 (19%)

Query: 1177 RIAKDLLSGSTARSHKDVT-----ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDK 1231
            R + D L  +T+ S +D+T     +LK++L  GLYPQ+A+ D FN+S    + +FH + K
Sbjct: 559  RHSLDQLQAATS-SAQDLTRDQMALLKLVLGRGLYPQLAVPDPFNSSRKDSDQIFHTQSK 617

Query: 1232 GFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFL 1291
                LHP  +F + P+VL   E        G     ++ +SSKHQLL+++SLLET+KP+L
Sbjct: 618  QGTVLHPTCIFANSPEVLHTQEQAARGGEAGRD--DKDKVSSKHQLLIFVSLLETNKPYL 675

Query: 1292 VNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAKSTADV----------- 1340
            VNC+R+PALQ+LLLFS ++ TN D +R+V D W+E    LQ A S + +           
Sbjct: 676  VNCVRVPALQSLLLFSRSLDTNGDCSRVVADGWLE----LQLADSESALRLLAASVRLRT 731

Query: 1341 -------NQLEHS-------------------------LTRDLVQFMSSATHLAYSIRRL 1368
                    QL H                          L+RDL++F+  A+ + YS+RRL
Sbjct: 732  QWESILDRQLAHQAQRQRPEVDEGEDAAAPGDRREVADLSRDLLRFV--ASEVPYSLRRL 789

Query: 1369 LAADLKTMYRRTGAESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
               +++ +Y      + VP          +    T GG  V  +L Y+
Sbjct: 790  TGLEVQNLYVGPQTITAVPSLPGLFGSSTLSPHPTKGGYAVADFLTYN 837



 Score =  117 bits (294), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 89/144 (61%), Gaps = 8/144 (5%)

Query: 792 YEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 851
           + I +   E+   R   RTGPGVC+RLY+E  Y   A Y  PEIRRV++D+L+L +  M 
Sbjct: 260 FWISQASAEQRKGR-AGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMS 318

Query: 852 LGDVRKFPFLE-------APPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPL 904
           +GD R FPF+E        PP  ++E+++  L   GA+DS E +T +G  L+ LPVD+ +
Sbjct: 319 MGDPRTFPFIEPPPPASNPPPPSSLETAILYLRDQGALDSSESLTPIGSLLAQLPVDVVI 378

Query: 905 GKMLVFGSMFHQIDTMLLLDLALN 928
           GKML+ G MFH  + +L +  AL+
Sbjct: 379 GKMLILGCMFHLAEPVLTIAAALS 402



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 46/62 (74%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 38   QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLRRLLPQRPDLKVILMSATINISLFSSY 97

Query: 1175 FN 1176
            F 
Sbjct: 98   FG 99



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 30/38 (78%)

Query: 102 YETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           +E+LSQY + VGYQIRFE  R   TKIVF+T GLLLRQ
Sbjct: 1   FESLSQYGSQVGYQIRFESTRTAATKIVFLTVGLLLRQ 38



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ G MFH  + +L +  AL+    F   ++ 
Sbjct: 354  GALDSSESLTPIGSLLAQLPVDVVIGKMLILGCMFHLAEPVLTIAAALSVQSPFTRSAQS 413

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 414  HPECAAARRPLES 426



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 930 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 978
           GA+DS E +T +G  L+ LPVD+ +GKML+ G MFH  + +L +  AL+
Sbjct: 354 GALDSSESLTPIGSLLAQLPVDVVIGKMLILGCMFHLAEPVLTIAAALS 402



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ G MFH  + +L +  AL+
Sbjct: 354  GALDSSESLTPIGSLLAQLPVDVVIGKMLILGCMFHLAEPVLTIAAALS 402



 Score = 45.8 bits (107), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 38  QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 70


>gi|198426090|ref|XP_002120713.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 34
           [Ciona intestinalis]
          Length = 1125

 Score =  521 bits (1341), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 259/487 (53%), Positives = 357/487 (73%), Gaps = 5/487 (1%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHS-TAEVKIILMSATINIELFHT 368
           ++  D  L+ Y V++LDEIHERHL  D LLG+++ L+ S   E++++LMSATIN+ELF  
Sbjct: 241 QMQQDGNLAQYSVIILDEIHERHLQSDLLLGLLRNLISSGNTELRLVLMSATINLELFCK 300

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDR-TKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           YF   + +I+VPGRLYPIQ++YHPI   D+  KS KLDP PYIRIL  IDKKYP +ERGD
Sbjct: 301 YFED-SPVIQVPGRLYPIQVQYHPISMEDKGNKSSKLDPRPYIRILQKIDKKYPSSERGD 359

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIF+ G+ EI+ I  AA+ Y E+++ WI+LPLHSTLS+EEQ++VF  AP+G+RKCI+ST
Sbjct: 360 LLIFLPGMQEITIIEEAAKAYAEETKNWIILPLHSTLSIEEQNKVFDIAPDGVRKCILST 419

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           NIAETS+T+DG+RFV DSG+VKEMS+D   KM  LQEFW+S+ASAEQRKGRAGRTGPGVC
Sbjct: 420 NIAETSVTVDGVRFVADSGRVKEMSFDAQFKMKRLQEFWVSRASAEQRKGRAGRTGPGVC 479

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
           +RLYSEE Y   AEYS PEI+RV +DSL+L +  MG+ DVRKF F+E PP   + +++  
Sbjct: 480 FRLYSEEDYEAFAEYSVPEIQRVPLDSLILQMKSMGIDDVRKFSFIEPPPESALNNAILG 539

Query: 608 LTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTN 667
           L +  A+   E ++ LG  L+ LPVD+ +GKML+ GS+F  I+ V+S+A+VLSVQSP+T 
Sbjct: 540 LKEQEALGRDEEISPLGEMLAQLPVDVAIGKMLIMGSLFDVIEPVMSVASVLSVQSPYTR 599

Query: 668 RAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKD-RVRSKKWCKRRGIEEQRFYEV 726
            A+ +P+    R+ +ES HGDP+T+LN + EW+ VK + +  S+ WCKRRG+EEQRFYE+
Sbjct: 600 SAYNNPEMVARRRPIESTHGDPITLLNLFDEWIKVKAEGKASSRTWCKRRGLEEQRFYEM 659

Query: 727 TKLRSQFKQVL-GDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKM 785
             ++ QF  +L G+S L  +        +S +R  RH + K L+ +K ++  E+ KR+ +
Sbjct: 660 ANIKRQFTDLLRGNSLLSGEKESSHGGETSHKRKQRHADRKRLRQLKEEERTESRKRKVL 719

Query: 786 LKADNAY 792
              D+ Y
Sbjct: 720 KMTDHKY 726



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 100/124 (80%)

Query: 16  YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL 75
           YLDF QK+ F  L K++  Q++LP+AQY++ I++ V   +VVI+AGDTGCGKSTQ+PQYL
Sbjct: 118 YLDFCQKQSFQKLKKLKTEQSNLPIAQYRERIVEAVKSSQVVIVAGDTGCGKSTQVPQYL 177

Query: 76  VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
           +++GF  IACTQPRRIA ISLSKRV +ETL+QY + V Y+IRFE  +   T+I+F+TEGL
Sbjct: 178 LRSGFTNIACTQPRRIAAISLSKRVGFETLNQYGSQVAYKIRFEGTKTSSTRILFLTEGL 237

Query: 136 LLRQ 139
           LLRQ
Sbjct: 238 LLRQ 241



 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/261 (35%), Positives = 138/261 (52%), Gaps = 42/261 (16%)

Query: 1192 KDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRI 1251
            KDV +LKVIL SGLYPQ+A  D  N+     + +FH K+K FV LHP S F + PD+L  
Sbjct: 776  KDVILLKVILCSGLYPQLAFPDNCNSYTADSDQVFHTKNKLFVVLHPNSYFANHPDILEP 835

Query: 1252 --SEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSA 1309
               +DDI +     K   R ++S KHQLL Y+SLLET+KP+LVN +R+P LQTLLLFS +
Sbjct: 836  VGKDDDITEG----KSSQRGLLSHKHQLLSYVSLLETTKPYLVNTMRVPTLQTLLLFSQS 891

Query: 1310 IHTNSDFTRLVFDSWIEVFV--PLQEAKSTADVNQLEHSL-------------------- 1347
            + T+    R++ D WIE+ +    Q     A   QL  +                     
Sbjct: 892  LDTDGGCKRIIVDEWIEICISDATQSQGIVASCLQLRTAWNQLLKLRINASKKEGLGSTR 951

Query: 1348 -TRDLVQFMSSA------THLAYSIRRLLAADLKTMYRRTGAESGVPGSNPFVAEFPMVV 1400
             TR+L +F+         + + Y +RR+ AAD K +Y   G       S+  +  F + +
Sbjct: 952  STRNLQKFLGIKLPEFLDSKVEYKVRRITAADKKKLY--VGPNINSEYSDEEIGNFAVKL 1009

Query: 1401 EETL-----GGVRVTPYLVYD 1416
             + +     GG++++P+L Y+
Sbjct: 1010 SQAVPHPSKGGIQLSPFLTYN 1030



 Score =  127 bits (319), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 79/113 (69%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLYSEE Y   AEYS PEI+RV +DSL+L +  MG+ DVRKF F+E PP   
Sbjct: 473 RTGPGVCFRLYSEEDYEAFAEYSVPEIQRVPLDSLILQMKSMGIDDVRKFSFIEPPPESA 532

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           + +++  L +  A+   E ++ LG  L+ LPVD+ +GKML+ GS+F  I+ ++
Sbjct: 533 LNNAILGLKEQEALGRDEEISPLGEMLAQLPVDVAIGKMLIMGSLFDVIEPVM 585



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHS-TAEVKIILMSATINIELFHT 1173
            Q+  D  L+ Y V++LDEIHERHL  D LLG+++ L+ S   E++++LMSATIN+ELF  
Sbjct: 241  QMQQDGNLAQYSVIILDEIHERHLQSDLLLGLLRNLISSGNTELRLVLMSATINLELFCK 300

Query: 1174 YF 1175
            YF
Sbjct: 301  YF 302



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 1021
            A+   E ++ LG  L+ LPVD+ +GKML+ GS+F  I+ ++
Sbjct: 545  ALGRDEEISPLGEMLAQLPVDVAIGKMLIMGSLFDVIEPVM 585



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 1071
            A+   E ++ LG  L+ LPVD+ +GKML+ GS+F  I+ ++
Sbjct: 545  ALGRDEEISPLGEMLAQLPVDVAIGKMLIMGSLFDVIEPVM 585


>gi|327276319|ref|XP_003222917.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Anolis
           carolinensis]
          Length = 953

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/503 (52%), Positives = 349/503 (69%), Gaps = 14/503 (2%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL+ DE+HERHLH DFLLGV++ LL    ++K++LMSATINI LF  YF   A +
Sbjct: 73  LPGYRVLIADEVHERHLHCDFLLGVLRRLLPVRPDLKLVLMSATINIRLFADYFGG-APV 131

Query: 377 IKVPGRLYPIQLEYHPIV--ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
           ++VPGRL+PI + Y PI   E    + E+LDP PY+R+L  ID KYP  ERGD+LIF+SG
Sbjct: 132 VQVPGRLFPITVLYEPIRPEESASGRKERLDPRPYLRVLQAIDHKYPPEERGDLLIFLSG 191

Query: 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494
           ++EI +++ AAQ Y   +Q W+VLPLHSTLS+ EQD+VF   P G+RKCIVSTNIAETS+
Sbjct: 192 VAEIGAVMEAAQTYATHTQRWVVLPLHSTLSVAEQDKVFDLPPPGVRKCIVSTNIAETSV 251

Query: 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554
           TIDG+RFVVDSGKVKE+SYD  AK+  LQEFWIS ASAEQRKGRAGRTGPGVCYRLY+E 
Sbjct: 252 TIDGVRFVVDSGKVKELSYDPKAKLQRLQEFWISCASAEQRKGRAGRTGPGVCYRLYAES 311

Query: 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAI 614
            Y   A Y  PEI+RV++D+L+L +  MGLGD R FPFLE PP  +++++V  L   GA+
Sbjct: 312 DYDAFAPYPVPEIQRVALDALVLQMKSMGLGDPRAFPFLEPPPPASLKTAVGYLKHQGAL 371

Query: 615 DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF--TNRAFRD 672
           D++E +T +G  L++LPVD+ +GKMLV G++F      L+ AAVLSV SPF  ++    D
Sbjct: 372 DAEESLTPIGSLLAELPVDVVIGKMLVLGTLFGLAAPTLTAAAVLSVPSPFLRSSSGRSD 431

Query: 673 PDCETARKELESNHGDPLTVLNAYKEWLGVKKD-RVRSKKWCKRRGIEEQRFYEVTKLRS 731
           PDC TAR+ LES  GDPLT+LN +  W+  K D R  S++WC+RRG+EE R YE   LR 
Sbjct: 432 PDCATARRPLESPLGDPLTLLNVFDAWVQEKSDNRGGSRRWCRRRGLEEHRLYEAANLRR 491

Query: 732 QFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNA 791
           QF+++L D  L+     P  S +   R  RH   + L  IKR+  +   +RRK+L+    
Sbjct: 492 QFQELLRDHRLLEPASRPRDSYT---RQSRHRHRRELHKIKREHEQGEGRRRKVLRLQ-- 546

Query: 792 YEIEEEEEEEEGERLESRTGPGV 814
              EEE     G+  +++ GP +
Sbjct: 547 ---EEEGGSSSGDEGDAKRGPDI 566



 Score =  130 bits (328), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 99/162 (61%), Gaps = 8/162 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPGVCYRLY+E  Y   A Y  PEI+RV++D+L+L +  MGLGD R FPFLE PP  
Sbjct: 297 GRTGPGVCYRLYAESDYDAFAPYPVPEIQRVALDALVLQMKSMGLGDPRAFPFLEPPPPA 356

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           +++++V  L   GA+D++E +T +G  L++LPVD+ +GKMLV G++F      L     L
Sbjct: 357 SLKTAVGYLKHQGALDAEESLTPIGSLLAELPVDVVIGKMLVLGTLFGLAAPTLTAAAVL 416

Query: 928 NFGAIDSKERVTSLGRFLSDL-----PVDIPLGKMLVFGSMF 964
              ++ S    +S GR   D      P++ PLG  L   ++F
Sbjct: 417 ---SVPSPFLRSSSGRSDPDCATARRPLESPLGDPLTLLNVF 455



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 144/268 (53%), Gaps = 44/268 (16%)

Query: 1188 ARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPD 1247
            A S   +++L+++L  GLYPQ+A+ D +N +    + +FH K+K  V LHP SVF S P+
Sbjct: 589  ALSSGQLSLLQLVLGRGLYPQLAVPDPYNKTRKDSDQIFHTKEKVGVVLHPTSVFASSPE 648

Query: 1248 VLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFS 1307
            +L+ S++   +     +   +  +SS+HQ+L ++SLLET+KP+LVNCLR+PALQ LLL +
Sbjct: 649  LLQASQERGFEHQ-AHRDAAKEGLSSRHQILAFVSLLETNKPYLVNCLRLPALQALLLLA 707

Query: 1308 SAIHTNSDFTRLVFDSWIEVFVPLQE---------------------------AKSTADV 1340
             ++ T++D  R+V DSW+E+ +P  E                           A    D 
Sbjct: 708  RSLDTSADCNRIVADSWLELRIPAAEMALRLLRGTLRLRASWEKILDRQLESRAGQGKDE 767

Query: 1341 NQLE---------HSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAE---SGVPG 1388
             + E         H LT++L++F+   T + YS+RRL   + + +Y   G +   +G  G
Sbjct: 768  EEAEERRPSAREVHRLTQELLEFLK--TEVQYSLRRLTPLEQQNLY--VGPQMVAAGREG 823

Query: 1389 SNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
             +       M+ +E  GG RV  +L ++
Sbjct: 824  LSQLFQGAEMIPDEVKGGYRVGDFLTFN 851



 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 43/62 (69%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q   +  L  Y VL+ DE+HERHLH DFLLGV++ LL    ++K++LMSATINI LF  Y
Sbjct: 66   QAQREPTLPGYRVLIADEVHERHLHCDFLLGVLRRLLPVRPDLKLVLMSATINIRLFADY 125

Query: 1175 FN 1176
            F 
Sbjct: 126  FG 127



 Score = 47.8 bits (112), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 8/90 (8%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
            GA+D++E +T +G  L++LPVD+ +GKMLV G++F      L     L   ++ S    +
Sbjct: 369  GALDAEESLTPIGSLLAELPVDVVIGKMLVLGTLFGLAAPTLTAAAVL---SVPSPFLRS 425

Query: 1040 SLGRFLSDL-----PVDIPLGKMLVFGSMF 1064
            S GR   D      P++ PLG  L   ++F
Sbjct: 426  SSGRSDPDCATARRPLESPLGDPLTLLNVF 455



 Score = 43.1 bits (100), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q   +  L  Y +LI DEVHERHL+ DFLLGV+
Sbjct: 66  QAQREPTLPGYRVLIADEVHERHLHCDFLLGVL 98



 Score = 42.7 bits (99), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 22/28 (78%)

Query: 112 VGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           VGYQIRFE      T+IVF+TEGLLLRQ
Sbjct: 39  VGYQIRFESTCSSATRIVFLTEGLLLRQ 66


>gi|332257224|ref|XP_003277711.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DHX34 [Nomascus leucogenys]
          Length = 1128

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 263/507 (51%), Positives = 348/507 (68%), Gaps = 27/507 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  +  L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLRRLLPTRPDLKVILMSATINISLFSSY 322

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           F+  A +++VPGRL+PI + Y P  VE   +KSEKLDP P++R+L  ID KYP  ERGD+
Sbjct: 323 FSN-APVVQVPGRLFPITVVYQPQEVEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDL 381

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG++EIS+++ A Q Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STN
Sbjct: 382 LVFLSGMAEISAVLEATQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTN 441

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+
Sbjct: 442 IAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCF 501

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP   +E+++  L
Sbjct: 502 RLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPAILETAILYL 561

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
              GA+DS   +T +G  L+ LPVD+ +GKML+ GSMF  ++ VL++AA LSVQSPFT  
Sbjct: 562 RDQGALDSSXALTPIGSLLALLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRS 621

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVT 727
           A   P+C  AR+        PL V         VK +R R S+KWC+RRGIEE R YE+ 
Sbjct: 622 AQSSPECAAARR--------PLRVTR-------VKSERSRNSRKWCRRRGIEEHRLYEMA 666

Query: 728 KLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
            LR QFK++L D  L+           S  R  +  E + L  +KR+  E A +RRK+L+
Sbjct: 667 NLRRQFKELLEDHRLLAGAQAAQVG-DSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLR 725

Query: 788 ADNAYEIEEEEEEEEGERLESRTGPGV 814
                    +EE++ G   E R GP +
Sbjct: 726 L--------QEEQDGGSSDEDRAGPAL 744



 Score =  173 bits (439), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 102/132 (77%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLAKLQHERAALPIAQYGNRILQTLEEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 134/268 (50%), Gaps = 51/268 (19%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S + + +LK++L  GLYPQ+A+ D FN+S    + +FH + K    LHP  VF   P VL
Sbjct: 778  SREQLVLLKLVLGRGLYPQLAVPDAFNSSRKDSDQIFHTQAKQGAVLHPTCVFAGSPQVL 837

Query: 1250 RISE------DDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTL 1303
               E      D   D         ++ + SKHQLL ++SLLET+KP+LVNC+R+PALQ+L
Sbjct: 838  HAQELEASSCDGSRD--------DKDKMISKHQLLSFVSLLETNKPYLVNCVRIPALQSL 889

Query: 1304 LLFSSAIHTNSDFTRLVFDSWIEVFVP--------------------------------- 1330
            LLFS ++ TN D +RLV DSW+E+ +                                  
Sbjct: 890  LLFSRSLDTNGDCSRLVADSWLELQLADSESAIRLLAASLQLRARWESALDRQLAHQAQR 949

Query: 1331 -LQEAKSTADVNQLE-HSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPG 1388
             L+E +  A V+  E  +L+++L+QF  +A+ + YS+RRL   + + MY         P 
Sbjct: 950  RLEEEEQDAPVSPKEVATLSKELLQF--TASKIPYSLRRLTGLEAQNMYVGPQTIPATPH 1007

Query: 1389 SNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
                     +    T GG  VT +L Y+
Sbjct: 1008 LPGLFGSSTLSPHPTKGGYAVTDFLTYN 1035



 Score =  127 bits (319), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 82/120 (68%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP   
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPAI 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS   +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 554 LETAILYLRDQGALDSSXALTPIGSLLALLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 49/62 (79%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLRRLLPTRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 49.3 bits (116), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS   +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+    F   ++ 
Sbjct: 565  GALDSSXALTPIGSLLALLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER 1094
              E  A  R
Sbjct: 625  SPECAAARR 633



 Score = 48.5 bits (114), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 34/49 (69%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS   +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 565  GALDSSXALTPIGSLLALLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 47.0 bits (110), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|444730788|gb|ELW71162.1| putative ATP-dependent RNA helicase DHX34 [Tupaia chinensis]
          Length = 1187

 Score =  514 bits (1323), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 255/491 (51%), Positives = 338/491 (68%), Gaps = 32/491 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  +  L  Y VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 263 QIQREPALPQYQVLIVDEVHERHLHNDFLLGVLRRLLPTRPDLKVILMSATINISLFSSY 322

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           F+    +          Q+ Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+
Sbjct: 323 FSNAPVV----------QVIYQPQEAEPSTSKSEKLDPRPFLRVLESIDNKYPPEERGDL 372

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG++EIS+++ AAQ Y   +Q W+VLPLHSTLS+ +QD+VF  AP G+RKCI+STN
Sbjct: 373 LVFLSGMAEISAVLEAAQTYASHTQRWVVLPLHSTLSVADQDKVFDVAPPGVRKCILSTN 432

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+
Sbjct: 433 IAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCF 492

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L
Sbjct: 493 RLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASLETAILYL 552

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
              GA+D+ E +T +G  L+ LPVD+ +GKML+ GSMF   + VL++AA LSVQSPFT  
Sbjct: 553 RDQGALDASEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRS 612

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVT 727
           A   P+C  AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+RRG+EE R YE+ 
Sbjct: 613 AQNSPECAAARRPLESDQGDPFTLFNIFNAWVQVKSERSRNSRKWCRRRGVEEHRLYEMA 672

Query: 728 KLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 787
            LR QFK            PG     +S  R  +  E + L  +KR   E   +RRK+L+
Sbjct: 673 NLRRQFKAAQ---------PG-----ASYTRLQQRRERRALHQLKRLHEEGGGRRRKVLR 718

Query: 788 ADNAYEIEEEE 798
                 ++EEE
Sbjct: 719 ------LQEEE 723



 Score =  174 bits (442), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 104/139 (74%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++A
Sbjct: 125 LPPERVSEFRQALLHYLDFVQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVA 184

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 185 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 244

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 245 TRSAATKIVFLTVGLLLRQ 263



 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 89/137 (64%), Gaps = 1/137 (0%)

Query: 792 YEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 851
           + I +   E+   R   RTGPGVC+RLY+E  Y   A Y  PEIRRV++D+L+L +  M 
Sbjct: 469 FWISQASAEQRKGR-AGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMS 527

Query: 852 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
           +GD R FPF+E PP  ++E+++  L   GA+D+ E +T +G  L+ LPVD+ +GKML+ G
Sbjct: 528 VGDPRTFPFIEPPPPASLETAILYLRDQGALDASEALTPIGSLLAQLPVDVVIGKMLILG 587

Query: 912 SMFHQIDTMLLLDLALN 928
           SMF   + +L +  AL+
Sbjct: 588 SMFSLAEPVLTIAAALS 604



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 97/198 (48%), Gaps = 53/198 (26%)

Query: 1194 VTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISE 1253
            + +LK++L  GLYPQ+A+ D FN+     + +FH + K    LHP S+F S P+VL   E
Sbjct: 774  MALLKLVLDRGLYPQLAVPDAFNSGRKDSDQIFHTRAKQGAVLHPTSIFASSPEVLHARE 833

Query: 1254 DDIVDPPPGLKLPGR---NVISSKHQLLVYMSLLETSKPFLVNCLRMPALQ--------- 1301
             +        ++  R   +  SS HQLL ++SLLET+K +LVNC+R+PALQ         
Sbjct: 834  QEAEG-----RVGSRDDKDKRSSGHQLLTFVSLLETNKLYLVNCVRIPALQAFPSSPLHR 888

Query: 1302 --------------------------------TLLLFSSAIHTNSDFTRLVFDSWIEVFV 1329
                                            +LLLFS ++ TN D TRLV D W+E   
Sbjct: 889  MQTVLGAGHAAVGPVLMVYMQQGRWAVSTDTESLLLFSRSLDTNGDCTRLVADGWLE--- 945

Query: 1330 PLQEAKSTADVNQLEHSL 1347
             LQ A S + V  L  SL
Sbjct: 946  -LQVADSESAVRLLGTSL 962



 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPALPQYQVLIVDEVHERHLHNDFLLGVLRRLLPTRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+D+ E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+    F   ++ 
Sbjct: 556  GALDASEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQN 615

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 616  SPECAAARRPLES 628



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 34/49 (69%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+D+ E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 556  GALDASEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 604



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPALPQYQVLIVDEVHERHLHNDFLLGVL 295


>gi|426243997|ref|XP_004015823.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DHX34 [Ovis aries]
          Length = 944

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 259/500 (51%), Positives = 343/500 (68%), Gaps = 29/500 (5%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K++LMSATINI LF +YF   A +
Sbjct: 270 LPQYQVLIVDEVHERHLHNDFLLGVLRRLLPQRPDLKVVLMSATINISLFSSYFGN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++  AQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEPAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPTSLETAILYLRDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S          L+ LPVD+ +GKML+ GSMFH  + VL++AA LSVQ+PFT  A  +P+C
Sbjct: 569 SSA-------LLAHLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQTPFTRSAQSNPEC 621

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKR---------RGIEEQRFYE 725
             AR+  E   GDP T+ N +  W+ VK +R R S+KWC+          RGIEE R YE
Sbjct: 622 AAARRAREX-QGDPFTLFNVFNTWVQVKSERGRNSRKWCRHGHRGARGPPRGIEEHRLYE 680

Query: 726 VTKLRSQFKQVLGDSGLITD--IPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRR 783
           +  LR QFK++L D GL+     P P  S   RER       + L  +KR+  E A ++R
Sbjct: 681 MANLRRQFKELLEDHGLLAGARAPQPGDSXQGRER-------QALYQLKRRHEEGAGRKR 733

Query: 784 KMLKADNAYEIEEEEEEEEG 803
           K+L+  +  +    +E+  G
Sbjct: 734 KVLRVQDNQDGWSSDEDRGG 753



 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/139 (57%), Positives = 103/139 (74%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++A
Sbjct: 125 LPPERVSEFRRALLHYLDFCQKQAFGRLAKLQRERAALPIAQYGHRILQTLKEHQVVVVA 184

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AG   +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 185 GDTGCGKSTQVPQYLLAAGCSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 244

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 245 TRSAATKIVFLTVGLLLRQ 263



 Score =  120 bits (301), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 79/121 (65%), Gaps = 7/121 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPGVC+RLY+E  Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  
Sbjct: 493 GRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPT 552

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           ++E+++  L   GA+DS          L+ LPVD+ +GKML+ GSMFH  + +L +  AL
Sbjct: 553 SLETAILYLRDQGALDSSA-------LLAHLPVDVVIGKMLILGSMFHLAEPVLTIAAAL 605

Query: 928 N 928
           +
Sbjct: 606 S 606



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K++LMSATINI LF +Y
Sbjct: 263  QMQREPSLPQYQVLIVDEVHERHLHNDFLLGVLRRLLPQRPDLKVVLMSATINISLFSSY 322

Query: 1175 FN 1176
            F 
Sbjct: 323  FG 324



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%)

Query: 1194 VTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISE 1253
            + +LK++L  GLYPQ+A+ D FN+     + +FH + K  V LHP  VF + P+VL   E
Sbjct: 794  MALLKLVLGRGLYPQLAVPDPFNSGRKDSDQIFHTQTKQGVVLHPTCVFANSPEVLHTQE 853

Query: 1254 DDIVD 1258
                D
Sbjct: 854  RSDAD 858



 Score = 45.4 bits (106), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QMQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 295



 Score = 40.8 bits (94), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 7/49 (14%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS          L+ LPVD+ +GKML+ GSMFH  + +L +  AL+
Sbjct: 565  GALDSSA-------LLAHLPVDVVIGKMLILGSMFHLAEPVLTIAAALS 606



 Score = 40.8 bits (94), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 7/49 (14%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS          L+ LPVD+ +GKML+ GSMFH  + +L +  AL+
Sbjct: 565  GALDSSA-------LLAHLPVDVVIGKMLILGSMFHLAEPVLTIAAALS 606


>gi|189238427|ref|XP_973569.2| PREDICTED: similar to ATP-dependent RNA helicase [Tribolium
           castaneum]
 gi|270008523|gb|EFA04971.1| hypothetical protein TcasGA2_TC015049 [Tribolium castaneum]
          Length = 1085

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/508 (49%), Positives = 359/508 (70%), Gaps = 21/508 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           +   ++ L+SYDV++LDE+HERHLHGDFL+G++KCLL+   + K+ILMSATIN++LF  Y
Sbjct: 218 QAQEEDTLNSYDVIILDEVHERHLHGDFLVGIMKCLLYKRQDFKLILMSATINLDLFTNY 277

Query: 370 FNRIA-KIIKVPGRLYPIQLEYHPIV-ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           F R   ++++VPGRL+PI++ Y PI+ +    K EKLD  PY++I+ +ID+KY  +++GD
Sbjct: 278 FKREKLEVVRVPGRLFPIEIVYRPIIRDPYERKREKLDCTPYLQIIQMIDEKYQPSQKGD 337

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIF++G SEIS++  A  EY++  + WIVL LHS+LSLEEQD+VF Y PEG+RKCI+ST
Sbjct: 338 LLIFLNGYSEISTLADAVSEYSQVKKNWIVLQLHSSLSLEEQDKVFDYPPEGVRKCIIST 397

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           NIAETS+TIDGIRFV+DSGKV  M+Y  +  ++ L E  IS+ SA+QR GRAGRTGPG+C
Sbjct: 398 NIAETSVTIDGIRFVIDSGKVNRMTYHTSGGVNKLTETTISQDSAKQRSGRAGRTGPGIC 457

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
           YRLYSEE +     ++  EI  V +D+LLL ++ +GL D+  FPFLE P  ++IE  V  
Sbjct: 458 YRLYSEEDFKNFEIFTPAEIHLVPLDTLLLHMISLGLTDLNHFPFLEKPSEKSIEEGVEK 517

Query: 608 LTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           L   GA++ K     +T LG  LS LPVD+ +GKMLV  ++F  ++ VL++AA+LS+QSP
Sbjct: 518 LKFTGALELKINCLALTPLGDALSQLPVDLSIGKMLVLSTVFGNVNAVLAVAALLSIQSP 577

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRV----------RSKKWCK 714
            T  A+R+ + +  R+ L+SNHGDP+++LN YKEWL VK+  V           SK W +
Sbjct: 578 LTQNAYRNTEAQDLRRVLDSNHGDPISMLNYYKEWLSVKQSSVPVKSRYEKGESSKVWAR 637

Query: 715 RRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRK 774
           +R +EEQRFYE TKL  QF+ +L ++ L++ +      LSS +RA+RHGE+K L++++ K
Sbjct: 638 KRCLEEQRFYEATKLLEQFRDILNEANLLSKVAA--HGLSSEQRAMRHGELKQLKSLRYK 695

Query: 775 KAEEAPKRRKMLKADNAYEIEEEEEEEE 802
              E    RK LK    YEI   ++EE+
Sbjct: 696 LKNEKKSERKQLK----YEIFSGDKEED 719



 Score =  193 bits (491), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/266 (41%), Positives = 153/266 (57%), Gaps = 30/266 (11%)

Query: 1175 FNRIAKDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFV 1234
            F R+ K LL+ ++A S+KD+ +LK+IL SGLYPQ+A+ DEFN+S+TV E L+H K+K +V
Sbjct: 735  FTRLQK-LLNEASADSYKDLVLLKLILTSGLYPQIAVEDEFNSSKTVSERLYHTKNKNYV 793

Query: 1235 SLHPFSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNC 1294
             L P S F + P+VL +  DDI  PPPG     +  IS KHQLL+Y ++LET K +LVN 
Sbjct: 794  FLRPLSYFATNPEVLELHNDDIEVPPPGYF--SKRPISKKHQLLIYQTILETKKVYLVNT 851

Query: 1295 LRMPALQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAKST----------------- 1337
            +RMPA+QTL+LFS  I +N   T+ VFD ++ + VP      T                 
Sbjct: 852  MRMPAIQTLMLFSKTIASNKTLTKFVFDDFLLLDVPFYGQGKTLLMRALKLRHKWKHELE 911

Query: 1338 -------ADVNQLE-HSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGS 1389
                    D N+ E      DLV F++  T + Y+I+RLL ADLK +Y       GV   
Sbjct: 912  SKLKDPSRDFNKKEIFYFIDDLVNFVN--TDVNYNIKRLLPADLKEIYTGEPGGVGVNEK 969

Query: 1390 NPFVAEFPMVVEETLGGVRVTPYLVY 1415
            NPF   F ++    LGGV++T    Y
Sbjct: 970  NPFEESFKIMQNNELGGVQMTENFTY 995



 Score =  177 bits (449), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 104/127 (81%)

Query: 13  LRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           +R Y DF+QK KF+ L K+R  Q+ LP+A Y+QEI+D +   RV++IAGDTGCGKSTQ+P
Sbjct: 92  VRVYQDFQQKSKFAKLRKLRRGQSELPIAGYRQEILDKLGGCRVMLIAGDTGCGKSTQVP 151

Query: 73  QYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFIT 132
           Q++ Q G+++I CTQPRRIAC+SL+KRVA+ETL+ + + VGYQIRFEK +R  T IVF+T
Sbjct: 152 QFVYQGGYKKIVCTQPRRIACVSLAKRVAHETLTDFKSTVGYQIRFEKSKRADTSIVFMT 211

Query: 133 EGLLLRQ 139
           EGLLLRQ
Sbjct: 212 EGLLLRQ 218



 Score =  103 bits (257), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 74/116 (63%), Gaps = 3/116 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPG+CYRLYSEE +     ++  EI  V +D+LLL ++ +GL D+  FPFLE P  ++
Sbjct: 451 RTGPGICYRLYSEEDFKNFEIFTPAEIHLVPLDTLLLHMISLGLTDLNHFPFLEKPSEKS 510

Query: 869 IESSVRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           IE  V  L   GA++ K     +T LG  LS LPVD+ +GKMLV  ++F  ++ +L
Sbjct: 511 IEEGVEKLKFTGALELKINCLALTPLGDALSQLPVDLSIGKMLVLSTVFGNVNAVL 566



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 52/63 (82%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q   ++ L+SYDV++LDE+HERHLHGDFL+G++KCLL+   + K+ILMSATIN++LF  Y
Sbjct: 218  QAQEEDTLNSYDVIILDEVHERHLHGDFLVGIMKCLLYKRQDFKLILMSATINLDLFTNY 277

Query: 1175 FNR 1177
            F R
Sbjct: 278  FKR 280



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 31/38 (81%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
           Q   ++ L+SYD++ILDEVHERHL+GDFL+G++   L+
Sbjct: 218 QAQEEDTLNSYDVIILDEVHERHLHGDFLVGIMKCLLY 255



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 9/90 (10%)

Query: 154 LSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDAN 213
           LSS +RA+RHGE+K L++++ K   E    RK LK    YEI   ++EE+    E+ D  
Sbjct: 674 LSSEQRAMRHGELKQLKSLRYKLKNEKKSERKQLK----YEIFSGDKEED----ETTDLR 725

Query: 214 EVEFRLKHDPKQVQ-VATDNFLSSYDILIL 242
           +VEFR+ +D  ++Q +  +    SY  L+L
Sbjct: 726 DVEFRITNDFTRLQKLLNEASADSYKDLVL 755


>gi|391326358|ref|XP_003737684.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like
           [Metaseiulus occidentalis]
          Length = 1068

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/495 (50%), Positives = 359/495 (72%), Gaps = 18/495 (3%)

Query: 304 LLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINI 363
           LL   +  +    +S + V++LDEIHERH+  DFLLG++KCL+    ++K+ILMSAT N+
Sbjct: 223 LLLRLLSTSPSEVMSKHKVIILDEIHERHISCDFLLGLVKCLVAQNEDLKVILMSATANL 282

Query: 364 ELFHTYFNRIAKIIKVPGRLYPIQLEY-HPIVELDR---TKSEKLDPGPYIRILSIIDKK 419
           +LF  YF+  + +I+VPGRL+P+++ Y  P  + D     K  K+DPGP++++LS+I++ 
Sbjct: 283 QLFSNYFDN-SPVIEVPGRLFPVEVNYIAPDRDKDSGLSRKKSKIDPGPFVKVLSLIEQT 341

Query: 420 YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG 479
             + ERGDVLIF+SG  EIS +    QE  E  +GWI+LPLHS L +++QD+VF +   G
Sbjct: 342 VAKGERGDVLIFLSGAQEISCL----QEELEGREGWILLPLHSALPIKQQDKVFDFP--G 395

Query: 480 LRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRA 539
           +RKCI+STNIAETS+TIDGIRFVVDSGKVKEM+YD + +M  L+EFW SKASA+QRKGRA
Sbjct: 396 MRKCILSTNIAETSVTIDGIRFVVDSGKVKEMTYDASCRMHKLKEFWCSKASAQQRKGRA 455

Query: 540 GRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 599
           GRTGPG C+RLYSE+Q+  + +YS PE+RRV + SL+L LV +GL DVR+FPFLE P  E
Sbjct: 456 GRTGPGKCFRLYSEKQFEEMDDYSEPEVRRVPLHSLVLQLVQLGLADVRQFPFLEKPDME 515

Query: 600 NIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQI-DTVLSLAAV 658
           ++E S+ +L + GA+ S E++T++G+ L+ LPVD+ +GK+L+ G MF ++ +  L+LAA 
Sbjct: 516 SLEHSICTLVRQGALASDEKLTAMGKILAQLPVDLSVGKVLLLGCMFRELLEASLTLAAA 575

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVK-KDRVRSKKWCKRRG 717
           LS+ S  + ++FRD +    RK+LE + GDP  ++  Y EWL VK  DR  S++WC+RRG
Sbjct: 576 LSIPSALSQQSFRDFETIRRRKDLEDDRGDPFMIVRVYHEWLQVKLDDRESSQRWCRRRG 635

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKA- 776
           +EEQR YE+TKLR QF ++L ++ L  DIP  +AS+SS ERA RHGE+  L+ ++++   
Sbjct: 636 VEEQRLYELTKLRGQFLRILKEAKLY-DIP--EASMSSSERARRHGEVHHLRDLRKEAVV 692

Query: 777 -EEAPKRRKMLKADN 790
            E   ++RK+ +  N
Sbjct: 693 HERKSRKRKLNEESN 707



 Score =  156 bits (395), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 133/445 (29%), Positives = 210/445 (47%), Gaps = 57/445 (12%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQI-DTMLLLDLALNFGAIDSKERV 1038
            GA+ S E++T++G+ L+ LPVD+ +GK+L+ G MF ++ +  L L  AL+  +  S++  
Sbjct: 528  GALASDEKLTAMGKILAQLPVDLSVGKVLLLGCMFRELLEASLTLAAALSIPSALSQQSF 587

Query: 1039 TSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEEAGERLESM 1098
                       ++   G   +   ++H+   + L D   +         EE+   RL  +
Sbjct: 588  RDFETIRRRKDLEDDRGDPFMIVRVYHEWLQVKLDDRESSQRWCRRRGVEEQ---RLYEL 644

Query: 1099 DANEVEF-RLKHDPKQVQVAADNFLSSYDVLVLDEIHE-RHLHGDFLLGVIKCLLHSTAE 1156
                 +F R+  + K   +   +  SS       E+H  R L  + ++   K       E
Sbjct: 645  TKLRGQFLRILKEAKLYDIPEASMSSSERARRHGEVHHLRDLRKEAVVHERKSRKRKLNE 704

Query: 1157 VKIILMSATINIELFHTYFNRIAKD------LLSGSTARSHKDVTILKVILASGLYPQVA 1210
               +       +++    F R+A+D      LL  S+  S  +   L  IL +GLYPQ+A
Sbjct: 705  ESNVDDEDDDALDVKDIDF-RLAQDAKTMRRLLRKSSELSTSERATLLWILTAGLYPQIA 763

Query: 1211 IGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLKLPGRNV 1270
            + D  N+ +   + LFH   KGFV+LHP SV    PDVLR+ + DI     GL       
Sbjct: 764  LSDTHNSYKKDADQLFHTDAKGFVTLHPNSVLALNPDVLRLDDLDIEAIEGGLS------ 817

Query: 1271 ISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSWIEVFV- 1329
            +SSKHQ+L YMSLLET+KP+LVNC+R+P LQ +LL +  IH +S   R+ FDS +EV + 
Sbjct: 818  VSSKHQMLAYMSLLETTKPYLVNCVRLPTLQYILLLAGEIHVSSCLKRMAFDSMVEVRIF 877

Query: 1330 ----------------------------PLQE-----AKSTADVNQLEHSLTRDLVQFMS 1356
                                         LQE     A+    V+     L+R L++++ 
Sbjct: 878  ESPETCQRHGLLLRVLLARLMFQRVFQRMLQESSQEAAEGEGGVSSETRRLSRRLLKYVG 937

Query: 1357 SA----THLAYSIRRLLAADLKTMY 1377
                    L Y+ +RLL ADLKT++
Sbjct: 938  EVLLNFKDLCYTQKRLLPADLKTLF 962



 Score =  137 bits (344), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 94/126 (74%)

Query: 13  LRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           L TY+ F +K++     K++  Q  LP+AQY+Q ++ ++   +V+++AGDTGCGKSTQ+P
Sbjct: 101 LLTYVAFLRKQEERRREKLKHFQEGLPIAQYRQTLVASLKTNQVILVAGDTGCGKSTQVP 160

Query: 73  QYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFIT 132
           +YL+  G++ I  TQPRR+A I+L+ RV++ET ++  NLVGYQIRFE+   + TK+ F+T
Sbjct: 161 RYLLDEGYEGIIVTQPRRLAAIALASRVSFETGTEMGNLVGYQIRFERKISKHTKLTFMT 220

Query: 133 EGLLLR 138
           EGLLLR
Sbjct: 221 EGLLLR 226



 Score =  115 bits (287), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 88/123 (71%), Gaps = 5/123 (4%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPG C+RLYSE+Q+  + +YS PE+RRV + SL+L LV +GL DVR+FPFLE P  E+
Sbjct: 457 RTGPGKCFRLYSEKQFEEMDDYSEPEVRRVPLHSLVLQLVQLGLADVRQFPFLEKPDMES 516

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E S+ +L + GA+ S E++T +G+ L+ LPVD+ +GK+L+ G MF +     LL+ +L 
Sbjct: 517 LEHSICTLVRQGALASDEKLTAMGKILAQLPVDLSVGKVLLLGCMFRE-----LLEASLT 571

Query: 929 FGA 931
             A
Sbjct: 572 LAA 574



 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 44/55 (80%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            +S + V++LDEIHERH+  DFLLG++KCL+    ++K+ILMSAT N++LF  YF+
Sbjct: 236  MSKHKVIILDEIHERHISCDFLLGLVKCLVAQNEDLKVILMSATANLQLFSNYFD 290


>gi|119577878|gb|EAW57474.1| DEAH (Asp-Glu-Ala-His) box polypeptide 34, isoform CRA_b [Homo
           sapiens]
          Length = 654

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 226/385 (58%), Positives = 295/385 (76%), Gaps = 2/385 (0%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +YF+  A +
Sbjct: 270 LPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSYFSN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALD 568

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GSMF  ++ VL++AA LSVQSPFT  A   P+C
Sbjct: 569 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQSSPEC 628

Query: 676 ETARKELESNHGDPLTVLNAYKEWL 700
             AR+ LES+ GDP T+ N +  W+
Sbjct: 629 AAARRPLESDQGDPFTLFNVFNAWV 653



 Score =  174 bits (440), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 102/132 (77%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  133 bits (335), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 84/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPAS 553

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 554 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 49/62 (79%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+    F   ++ 
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQS 624

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 625  SPECAAARRPLES 637



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 565  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613



 Score = 46.6 bits (109), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|397486114|ref|XP_003814176.1| PREDICTED: probable ATP-dependent RNA helicase DHX34 [Pan paniscus]
          Length = 1146

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 259/515 (50%), Positives = 336/515 (65%), Gaps = 41/515 (7%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +YF+  A +
Sbjct: 270 LPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSYFSN-APV 328

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDLLVFLSGM 388

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
           +EIS+++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCM-GLGDVRKF-PF--------------LEAPPAE 599
           Y   A Y  PEIRRV++DSL+L  V + G G  R   P               L+ PP E
Sbjct: 509 YDAFAPYPVPEIRRVALDSLVLQGVNLEGFGASRPSDPVVLVCTVSVSGTHLTLQMPPPE 568

Query: 600 NIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVL 659
               +   L         E VT            + + KML+ GSMF  ++ VL++AA L
Sbjct: 569 ----AGCGLWCLACKAVSENVTQSA---------LVVRKMLILGSMFSLVEPVLTIAAAL 615

Query: 660 SVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGI 718
           SVQSPFT  A   P+C  AR+ LES+ GDP T+ N +  W+ VK +R R S+KWC+RRGI
Sbjct: 616 SVQSPFTRSAQSSPECAAARRLLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGI 675

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE 778
           EE R YE+  LR QFK++L D GL+           S  R  +  E + L  +KR+  E 
Sbjct: 676 EEHRLYEMANLRRQFKELLEDHGLLAGAQAAPVG-DSYSRLQQRRERRALHQLKRQHEEG 734

Query: 779 APKRRKMLKADNAYEIEEEEEEEEGERLESRTGPG 813
           A +RRK+L+         +EE++ G   E R GP 
Sbjct: 735 AGRRRKVLRL--------QEEQDGGSSDEDRAGPA 761



 Score =  174 bits (440), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 102/132 (77%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  139 bits (351), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 134/262 (51%), Gaps = 39/262 (14%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S + + +LK++L  GLYPQ+A+ D FN+S    + +FH + K    LHP  VF   P+VL
Sbjct: 796  SREQLALLKLVLGRGLYPQLAVPDAFNSSRKDSDQIFHTQAKQGAVLHPTCVFAGSPEVL 855

Query: 1250 RISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSA 1309
               E +  +         ++ +SSKHQLL ++SLLET+KP+LVNC+R+PALQ+LLLFS +
Sbjct: 856  HAQELEASNCDGSRD--DKDKMSSKHQLLSFVSLLETNKPYLVNCVRIPALQSLLLFSRS 913

Query: 1310 IHTNSDFTRLVFDSWIEVFVPLQEAK--------------STADVNQLEH---------- 1345
            + TN D +RLV D W+E+ +   E+                +A   QL H          
Sbjct: 914  LDTNGDCSRLVADGWLELQLADSESAIRLLAASLRLRARWESALDRQLAHQAQRQLEEEE 973

Query: 1346 -----------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGSNPFVA 1394
                       +L+++L+QF  +A+ + YS+RRL   + + MY         P       
Sbjct: 974  QDTPVSPKEVATLSKELLQF--TASKIPYSLRRLTGLEAQNMYVGPQTIPATPHLPGLFG 1031

Query: 1395 EFPMVVEETLGGVRVTPYLVYD 1416
               +    T GG  VT +L Y+
Sbjct: 1032 SSTLSPHPTKGGYAVTDFLTYN 1053



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 49/62 (79%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 63/136 (46%), Gaps = 29/136 (21%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCM-GLGDVRKF-PF------ 860
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L  V + G G  R   P       
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQGVNLEGFGASRPSDPVVLVCTV 553

Query: 861 --------LEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGS 912
                   L+ PP E    +   L         E VT            + + KML+ GS
Sbjct: 554 SVSGTHLTLQMPPPE----AGCGLWCLACKAVSENVTQSA---------LVVRKMLILGS 600

Query: 913 MFHQIDTMLLLDLALN 928
           MF  ++ +L +  AL+
Sbjct: 601 MFSLVEPVLTIAAALS 616



 Score = 47.0 bits (110), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|313233848|emb|CBY10017.1| unnamed protein product [Oikopleura dioica]
          Length = 1096

 Score =  474 bits (1221), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 252/555 (45%), Positives = 365/555 (65%), Gaps = 30/555 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  D  L  YDV+VLDE+HERHL  D LLG++  ++    +++++LMSATINIELF  Y
Sbjct: 230 QMQMDTLLKEYDVIVLDEVHERHLQSDLLLGLLAEVIMKRDDLRLVLMSATINIELFSKY 289

Query: 370 FNRIAKIIKVPGRLYPIQLEYHP-----IVELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424
           F     II+VPGRL+PI L++ P         + + +++++P P +R L +ID KY  ++
Sbjct: 290 FEGCP-IIQVPGRLFPITLQFRPPGNENQFSKENSTNKRINPMPVLRTLQLIDSKYKSSD 348

Query: 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           RGD+L+F+SG+SEI +  +  Q Y E+S+ WI+L LHS+LS+ EQD+VF   PEG RKCI
Sbjct: 349 RGDLLVFLSGMSEIQTRAKPLQNYAEESKKWIILALHSSLSVAEQDKVFDLPPEGCRKCI 408

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           +STNIAETS+TIDGIRFV+D+GK+KEMS++   +M  L+E+W+SKASAEQRKGRAGRTGP
Sbjct: 409 LSTNIAETSVTIDGIRFVIDTGKMKEMSFEAETRMRKLREYWVSKASAEQRKGRAGRTGP 468

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G+C+RLYSE+ +   A+             L+L +  M +GD R F F+E PP EN+E S
Sbjct: 469 GICFRLYSEDDFDASAK-------------LILQMKQMKIGDPRTFNFIEKPPEENLEIS 515

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            + L  H A+DS E++T LG  L+ LPVD+ +GKML+ G++F  I+ +L+LAA LSVQ+P
Sbjct: 516 FKMLKGHLALDSDEKLTPLGECLAQLPVDVVIGKMLIMGTLFDLIEPILTLAACLSVQNP 575

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS-KKWCKRRGIEEQRF 723
            T  AF + D  +  KELES+ GDP+ +L  +  W+ +K D+  S  KWC+RRGIEEQR 
Sbjct: 576 LTRHAFGNEDAVSRLKELESDIGDPMQLLYIFDSWIEIKNDKKYSTTKWCQRRGIEEQRL 635

Query: 724 YEVTKLRSQFKQVLGDSGLITDIPGPDASL---SSRERALRHGEIKLLQAIKRKKAEEAP 780
           YE+  LR QFK +L    L+ +     A L    S+ER LRHG++K+L+A+KR  A E  
Sbjct: 636 YEIANLRKQFKSILSGHALLNNETARLAELEAMDSKERKLRHGQMKMLKALKR-SANEEQ 694

Query: 781 KRRKMLKADNAYEIE---EEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRR 837
           K++K LK ++   +E    +E+E + E         + +RL  + Q   + ++S   + +
Sbjct: 695 KKQKRLKHNDGTRMEMALPDEDELDAEESAKIDITDLEFRLKHDVQG--ITDHSAAHLSQ 752

Query: 838 VSIDSLLLSLVCMGL 852
             I  L + L+C GL
Sbjct: 753 KDIQMLQI-LICAGL 766



 Score =  154 bits (389), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 97/127 (76%)

Query: 13  LRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           L  +L F Q + FS L  +R+ Q  LP+ +Y++EI + V + RV I+AGDTGCGKSTQ+P
Sbjct: 104 LEVFLQFHQNQSFSKLQTLRKRQKELPMKKYEEEICEAVAQSRVTIVAGDTGCGKSTQVP 163

Query: 73  QYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFIT 132
           QYL++ GF++IA TQPRRIA I+L+KRV YETL+ + + VGY++RF+    + T+I+F+T
Sbjct: 164 QYLLKHGFRKIAVTQPRRIASIALAKRVGYETLNMFGSHVGYKVRFDGTATKATRILFLT 223

Query: 133 EGLLLRQ 139
           EGLLLRQ
Sbjct: 224 EGLLLRQ 230



 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 90/137 (65%), Gaps = 3/137 (2%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S KD+ +L++++ +GLYPQVAI D+ NT    +E LFH +DK F++LHP   F + P  L
Sbjct: 751  SQKDIQMLQILICAGLYPQVAIQDKNNTYSAEQEQLFHTRDKNFLTLHPTGYFANNPKSL 810

Query: 1250 RISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSA 1309
              +  +  DP   L+   + ++S +HQLL + SLLETSKP+L+  +R+PAL ++LL+SS 
Sbjct: 811  EPNGKEEPDP---LQPEKKRLVSHRHQLLAFHSLLETSKPYLMMPIRVPALHSVLLYSSE 867

Query: 1310 IHTNSDFTRLVFDSWIE 1326
            + T+     +V D W+E
Sbjct: 868  LDTSGSCQTIVADRWLE 884



 Score =  106 bits (265), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 151/331 (45%), Gaps = 46/331 (13%)

Query: 809  RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
            RTGPG+C+RLYSE+ +   A+             L+L +  M +GD R F F+E PP EN
Sbjct: 465  RTGPGICFRLYSEDDFDASAK-------------LILQMKQMKIGDPRTFNFIEKPPEEN 511

Query: 869  IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
            +E S + L  H A+DS E++T LG  L+ LPVD+ +GKML+ G++F  I+ +L L   L+
Sbjct: 512  LEISFKMLKGHLALDSDEKLTPLGECLAQLPVDVVIGKMLIMGTLFDLIEPILTLAACLS 571

Query: 929  ---------FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNF 979
                     FG  D+  R+  L   + D     P+  + +F       D+ + +     +
Sbjct: 572  VQNPLTRHAFGNEDAVSRLKELESDIGD-----PMQLLYIF-------DSWIEIKNDKKY 619

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
                  +R     + L ++       K ++ G      +T  L +L     A+DSKER  
Sbjct: 620  STTKWCQRRGIEEQRLYEIANLRKQFKSILSGHALLNNETARLAELE----AMDSKERKL 675

Query: 1040 SLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEEAGERLESMD 1099
              G+        + + K L   +   Q     L       +  +  +E+E   E    +D
Sbjct: 676  RHGQ--------MKMLKALKRSANEEQKKQKRLKHNDGTRMEMALPDEDELDAEESAKID 727

Query: 1100 ANEVEFRLKHDPKQVQVAADNFLSSYDVLVL 1130
              ++EFRLKHD + +   +   LS  D+ +L
Sbjct: 728  ITDLEFRLKHDVQGITDHSAAHLSQKDIQML 758



 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D  L  YDV+VLDE+HERHL  D LLG++  ++    +++++LMSATINIELF  Y
Sbjct: 230  QMQMDTLLKEYDVIVLDEVHERHLQSDLLLGLLAEVIMKRDDLRLVLMSATINIELFSKY 289

Query: 1175 F 1175
            F
Sbjct: 290  F 290



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 4/93 (4%)

Query: 153 SLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIE---EEEEEEEGERLES 209
           ++ S+ER LRHG++K+L+A+KR  A E  K++K LK ++   +E    +E+E + E    
Sbjct: 667 AMDSKERKLRHGQMKMLKALKR-SANEEQKKQKRLKHNDGTRMEMALPDEDELDAEESAK 725

Query: 210 MDANEVEFRLKHDPKQVQVATDNFLSSYDILIL 242
           +D  ++EFRLKHD + +   +   LS  DI +L
Sbjct: 726 IDITDLEFRLKHDVQGITDHSAAHLSQKDIQML 758


>gi|256079486|ref|XP_002576018.1| ATP-dependent RNA Helicase [Schistosoma mansoni]
 gi|353231230|emb|CCD77648.1| putative atp-dependent RNA helicase [Schistosoma mansoni]
          Length = 1239

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/503 (48%), Positives = 343/503 (68%), Gaps = 19/503 (3%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  D FL+ YDV+VLDE+HERH   D LLG++KCL+    +++++LMSATIN+  F  +
Sbjct: 258 QMQRDPFLNDYDVIVLDEVHERHWQTDCLLGLVKCLIVVRPKLRVVLMSATINVNTFAKF 317

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI--VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           FN    II+VPGRLYPI L Y P+  VE+  T ++++DP PYIR+L  ID  YP TERGD
Sbjct: 318 FND-CPIIQVPGRLYPIDLHYIPLSPVEIANT-TDRIDPAPYIRLLRRIDVTYPATERGD 375

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIF+SG+++I +I+  A+ Y E+++ WI+LPLHS LS  +Q++VFH AP+ +RKCI+ST
Sbjct: 376 LLIFLSGMADIQAIMEPAKAYAEETKRWIILPLHSALSASDQEKVFHVAPDCVRKCILST 435

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           NIAETS+TIDGIRFV DSGKVKE+S+D  A+M  L+EF ISKASA QRKGRAGRTGPGVC
Sbjct: 436 NIAETSLTIDGIRFVADSGKVKELSWDSKARMRCLKEFSISKASANQRKGRAGRTGPGVC 495

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
           YR Y++E Y     +STPEIRRV +++L+L ++ MGL D++KFPF++ P  + I+ ++  
Sbjct: 496 YRFYTQEDYDNFEAFSTPEIRRVPLETLVLQMLVMGLPDIKKFPFIDPPEMKCIDEALDI 555

Query: 608 LTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           L  HGAI  +     VT LG+ LSD+PV+  +G+ML+  S+    + VLSLAA +++Q P
Sbjct: 556 LKSHGAIIPQNNVLTVTPLGQLLSDIPVEFSIGRMLIMASLLRLTNPVLSLAAGMAIQCP 615

Query: 665 -FTNRAFRDPDCETAR----KELESNHGDPLTVLNAYKEWLGVKKDRVRS-KKWCKRRGI 718
                AF   + +T R     E ES+HGD  T++N + EW+ V   R  + K+WC+R G 
Sbjct: 616 LLPYTAFSGAE-QTRRIDALAEYESDHGDAFTLVNVFDEWIKVVYLRCTNIKRWCRRIGA 674

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE 778
           ++QR +E+ +LRSQF Q+L DSGL+        S  S +   R    K L   +R +  +
Sbjct: 675 QQQRLHEMVRLRSQFAQLLKDSGLLD-----SKSTESDKNLSRTQHFKNLNYARRSERMK 729

Query: 779 APKRRKMLKADNAYEIEEEEEEE 801
           + +RR +   DN  E  E E+E+
Sbjct: 730 SKRRRLLTLQDNLSENSESEKED 752



 Score =  181 bits (458), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 158/584 (27%), Positives = 259/584 (44%), Gaps = 112/584 (19%)

Query: 809  RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
            RTGPGVCYR Y++E Y     +STPEIRRV +++L+L ++ MGL D++KFPF++ P  + 
Sbjct: 489  RTGPGVCYRFYTQEDYDNFEAFSTPEIRRVPLETLVLQMLVMGLPDIKKFPFIDPPEMKC 548

Query: 869  IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
            I+ ++  L  HGAI                   IP   +L                    
Sbjct: 549  IDEALDILKSHGAI-------------------IPQNNVLT------------------- 570

Query: 929  FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN---------- 978
                     VT LG+ LSD+PV+  +G+ML+  S+    + +L L   +           
Sbjct: 571  ---------VTPLGQLLSDIPVEFSIGRMLIMASLLRLTNPVLSLAAGMAIQCPLLPYTA 621

Query: 979  FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERV 1038
            F   +   R+ +L  + SD       G      ++F +   ++ L             R 
Sbjct: 622  FSGAEQTRRIDALAEYESDH------GDAFTLVNVFDEWIKVVYL-------------RC 662

Query: 1039 TSLGRFLSDLPVDIP-LGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEEAGERLES 1097
            T++ R+   +      L +M+   S F Q    LL D  L     +E ++     +  ++
Sbjct: 663  TNIKRWCRRIGAQQQRLHEMVRLRSQFAQ----LLKDSGLLDSKSTESDKNLSRTQHFKN 718

Query: 1098 MDANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV 1157
            ++      R+K   +++    DN   + +     E  + H+  D    + K L  S+   
Sbjct: 719  LNYARRSERMKSKRRRLLTLQDNLSENSE----SEKEDHHVESDSS-KLRKWLSASSRSS 773

Query: 1158 KIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFN- 1216
                     ++EL   Y         +     +  D+ +LKV+LA G+YPQ+AIGD  N 
Sbjct: 774  INSSNVPVQDLELVLCYNLSSLAQSANIQQNMTQADLQLLKVVLAGGMYPQLAIGDSANA 833

Query: 1217 --------TSETVKEALFHCK-DKGFVSLHPFSVFTSQPDVL---RISEDDIVDPPPGLK 1264
                    T+    E +FH K  K   SL   +   S+ D     +  E++I +  P   
Sbjct: 834  YRVANRGGTAGAGAEMVFHTKVQKSQTSLSNKNSKQSRDDDFDDEQTEEENIPEVLP--- 890

Query: 1265 LPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSW 1324
                +  +  HQLL+Y+ L+ET+KPFLVN +R+PAL TLLL+   + TN+D +R+VFDSW
Sbjct: 891  ----SGFAYDHQLLMYLDLMETTKPFLVNTIRVPALPTLLLYCREVDTNADISRIVFDSW 946

Query: 1325 IEV-FVPLQEAKSTADVNQLEHSLTRDLVQFMSSATHLAYSIRR 1367
            +EV  + ++ A+          S T+ L+++      LA  +RR
Sbjct: 947  LEVRLLDVEAAQRAVATTIWLRSTTQCLMEY-----ELAECLRR 985



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 100/142 (70%), Gaps = 11/142 (7%)

Query: 9   WKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKS 68
           + L+   YLDF  K KF+ ++K+R  Q+ LP+A ++ E++ T+ K +VVI+AGDTGCGKS
Sbjct: 117 FHLIYDMYLDFLLKRKFARIVKLRIDQSVLPIANFRTELLSTLSKHQVVIVAGDTGCGKS 176

Query: 69  TQIPQYLVQA-----------GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           TQ+PQYL               +Q IA TQPRRIACISL+ RV+ E L++  + VGYQ+R
Sbjct: 177 TQVPQYLYYGESNLNDTPGPNSYQNIAVTQPRRIACISLAARVSTEMLNERGSKVGYQVR 236

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE+ R + T+I+F+TEGLLLRQ
Sbjct: 237 FERSRTKATRILFLTEGLLLRQ 258



 Score = 76.6 bits (187), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 46/62 (74%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D FL+ YDV+VLDE+HERH   D LLG++KCL+    +++++LMSATIN+  F  +
Sbjct: 258  QMQRDPFLNDYDVIVLDEVHERHWQTDCLLGLVKCLIVVRPKLRVVLMSATINVNTFAKF 317

Query: 1175 FN 1176
            FN
Sbjct: 318  FN 319



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  D FL+ YD+++LDEVHERH   D LLG++
Sbjct: 258 QMQRDPFLNDYDVIVLDEVHERHWQTDCLLGLV 290


>gi|440790390|gb|ELR11673.1| helicase conserved Cterminal domain containing protein
           [Acanthamoeba castellanii str. Neff]
          Length = 1355

 Score =  471 bits (1213), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/468 (49%), Positives = 324/468 (69%), Gaps = 37/468 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++A+D  L  YDVL++DE+HERH+H DFLLG+++ L+    E+K++LMSATIN+ELF   
Sbjct: 340 QLASDPLLMDYDVLIMDEVHERHIHADFLLGLLRELIAKRPELKLVLMSATINLELFSEA 399

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVE-----LDRTKSEK--------------------- 403
           F   A +I+VPGR+YP+++E+ P+ E      D  K                        
Sbjct: 400 FPG-APVIRVPGRMYPVEVEFVPLPEDQLLYKDLAKPASAADAEATAAAPDVARPLPKAG 458

Query: 404 --LDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLH 461
             L+P PY+ I+  ID+++P+ ERGD+LIF+SG+S+I  +    + Y   ++ WI+LPLH
Sbjct: 459 GPLNPKPYLAIMQRIDEQFPQEERGDLLIFVSGMSDIMCLAEEMRGYAATTRRWIILPLH 518

Query: 462 STLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMST 521
           S LS+E+Q++VF    EG+RKCI+STNIAET+ITI+GIRFV+DSGKVKEM YD   KMS+
Sbjct: 519 SALSVEDQEKVFDPVEEGVRKCIISTNIAETAITINGIRFVIDSGKVKEMGYDAETKMSS 578

Query: 522 LQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVC 581
           LQ FWIS+ASAEQRKGRAGRTGPGVCYRLYS+E Y+ L  YS PEI+R+ ++S++L ++ 
Sbjct: 579 LQSFWISRASAEQRKGRAGRTGPGVCYRLYSQEIYAHLLAYSIPEIQRIPLESIILQMIA 638

Query: 582 MGLGDVRKFPFLEAPPAENIESSVRSLTQHGAI----DSKERVTSLGRFLSDLPVDIPLG 637
           MG+ D R+F ++E P  + +E+S+ +L QH A+    D   R+T LG  L+ LPVDIP+G
Sbjct: 639 MGVRDPREFQYIERPSDDKLEASLFNLQQHQAVTGCRDGTYRLTPLGGMLAQLPVDIPVG 698

Query: 638 KMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYK 697
           KMLV GS+F  +D VL++AA L+VQSPF  R   D    TAR E +S HGD  T+LN + 
Sbjct: 699 KMLVLGSLFRILDPVLTMAAALTVQSPFVTRGNFD---STARHEFDSPHGDAFTLLNLFD 755

Query: 698 EWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLIT 744
           +W+ VK  + R S+ WC+   +EEQR YE+ KL+ QFK +L D+GL+ 
Sbjct: 756 QWIKVKTSKPRSSRSWCRAHSVEEQRMYEIAKLKGQFKDILLDNGLLA 803



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/134 (55%), Positives = 101/134 (75%)

Query: 6   YEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGC 65
           ++E K  L  Y DF+QKEKF+  +KI+  +  LP+AQY+QEIID V   ++ ++AGDTGC
Sbjct: 207 FQEVKKALHLYEDFRQKEKFAKTLKIQSERAGLPIAQYRQEIIDAVRNHQITLVAGDTGC 266

Query: 66  GKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREK 125
           GKSTQ+ QYL+  G ++I CTQPRRIA +SL KRVA+ETL++Y + + YQIRFE  +   
Sbjct: 267 GKSTQVCQYLLSGGMRKIGCTQPRRIAAMSLCKRVAFETLNEYGSRIAYQIRFESSKTLA 326

Query: 126 TKIVFITEGLLLRQ 139
           T +VF+TEG+LLRQ
Sbjct: 327 TDVVFLTEGVLLRQ 340



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 11/164 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLYS+E Y+ L  YS PEI+R+ ++S++L ++ MG+ D R+F ++E P  + 
Sbjct: 598 RTGPGVCYRLYSQEIYAHLLAYSIPEIQRIPLESIILQMIAMGVRDPREFQYIERPSDDK 657

Query: 869 IESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLD 924
           +E+S+ +L QH A+    D   R+T LG  L+ LPVDIP+GKMLV GS+F  +D +L + 
Sbjct: 658 LEASLFNLQQHQAVTGCRDGTYRLTPLGGMLAQLPVDIPVGKMLVLGSLFRILDPVLTMA 717

Query: 925 LALNFGAIDSKERVTSLGRFLSDL--PVDIPLGKMLVFGSMFHQ 966
            AL       +    + G F S      D P G      ++F Q
Sbjct: 718 AALTV-----QSPFVTRGNFDSTARHEFDSPHGDAFTLLNLFDQ 756



 Score =  116 bits (291), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/149 (42%), Positives = 87/149 (58%), Gaps = 25/149 (16%)

Query: 1181 DLLSGSTAR--SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHP 1238
            D LS  +AR  S  D+ +LKVILASGLYP +A+ DE N+     + LFH + K FV LHP
Sbjct: 925  DQLSRDSARELSLHDINLLKVILASGLYPNIAVADELNSVRRDSDQLFHTRWKEFVILHP 984

Query: 1239 FSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMP 1298
             SVF S+   + +++                       LL Y+SLLET+KP+ VN  R P
Sbjct: 985  TSVFGSEAKQITLTD-----------------------LLAYVSLLETNKPYAVNVTRCP 1021

Query: 1299 ALQTLLLFSSAIHTNSDFTRLVFDSWIEV 1327
            AL TLLLF++ I T +D +RL  D+W+E+
Sbjct: 1022 ALHTLLLFANTIDTTADCSRLAVDNWLEI 1050



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 48/61 (78%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+A+D  L  YDVL++DE+HERH+H DFLLG+++ L+    E+K++LMSATIN+ELF   
Sbjct: 340  QLASDPLLMDYDVLIMDEVHERHIHADFLLGLLRELIAKRPELKLVLMSATINLELFSEA 399

Query: 1175 F 1175
            F
Sbjct: 400  F 400



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
            G  D   R+T LG  L+ LPVDIP+GKMLV GS+F  +D +L +  AL       +    
Sbjct: 673  GCRDGTYRLTPLGGMLAQLPVDIPVGKMLVLGSLFRILDPVLTMAAALTV-----QSPFV 727

Query: 1040 SLGRFLSDL--PVDIPLGKMLVFGSMFHQ 1066
            + G F S      D P G      ++F Q
Sbjct: 728  TRGNFDSTARHEFDSPHGDAFTLLNLFDQ 756



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 32/49 (65%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            G  D   R+T LG  L+ LPVDIP+GKMLV GS+F  +D +L +  AL 
Sbjct: 673  GCRDGTYRLTPLGGMLAQLPVDIPVGKMLVLGSLFRILDPVLTMAAALT 721



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 28/33 (84%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+A+D  L  YD+LI+DEVHERH++ DFLLG++
Sbjct: 340 QLASDPLLMDYDVLIMDEVHERHIHADFLLGLL 372


>gi|324502380|gb|ADY41048.1| ATP-dependent RNA helicase DHX34 [Ascaris suum]
          Length = 1028

 Score =  471 bits (1212), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/500 (48%), Positives = 349/500 (69%), Gaps = 13/500 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  D  L  ++V++LDEIHER+L GDFL+G+++ L+   A++K+ILMSATIN+ELF +Y
Sbjct: 234 QMQIDADLLQHNVIILDEIHERNLSGDFLMGLLRELIRRRADLKLILMSATINLELFTSY 293

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVE---LDRTK-SEKLDPGPYIRILSIIDKKYPRTER 425
           F   A +I+V GRL+P+ ++Y PI E    + TK + K+DP PY+ +L +ID K  R ER
Sbjct: 294 FAG-APVIEVAGRLFPVDVQYLPINESASYEHTKRTPKIDPLPYLHVLELIDAKVDRIER 352

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GD LIF++GISEI+++  A + Y E+++ WI+L LHSTLS EEQ++VF  AP G+RKC++
Sbjct: 353 GDALIFLNGISEITTVAEALKVYAERTKRWIILMLHSTLSNEEQEKVFDMAPPGVRKCVL 412

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           STNIAETS+TIDGIRFV+DSGKV  + YD   +M +L+++W S+ASA+QRKGRAGRTGPG
Sbjct: 413 STNIAETSVTIDGIRFVIDSGKVNLVKYDSKTRMHSLRQYWTSQASADQRKGRAGRTGPG 472

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAENIESS 604
           VCYRLYS EQ+S +  ++  EI RVS++SL + +V M +      FPF+E P    +E +
Sbjct: 473 VCYRLYSREQFSKMDAFTVSEINRVSLESLAMHIVNMNVTFSPLDFPFIEKPDMAALEEA 532

Query: 605 VRSLTQHGAI--DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           +  L + G +  DS   +T LG+ ++ LPV+IP+ K+LV+G +F Q++  L++AA LSV 
Sbjct: 533 MAGLWRQGILEPDSATTLTPLGKVIATLPVEIPIAKVLVYGCVFDQVEASLTIAASLSVS 592

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
           SPFTNR+FR+PD    R  + S HGDP  +LN ++E++ V+  R   +KW + RGI+ QR
Sbjct: 593 SPFTNRSFREPDQMDRRSNIMSEHGDPFALLNTFREFVEVQSTRDDLRKWGRERGIDIQR 652

Query: 723 FYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKR 782
            YE+++LR QFK++L D G+I    G     S+RER +R GE K L  +K   A    KR
Sbjct: 653 VYEISQLRQQFKELLEDGGVIEKNTGE----STRERRIRAGERKRLTEMK-NDARFQVKR 707

Query: 783 RKMLKADNAYEIEEEEEEEE 802
           RK+LK +  ++   + E+ E
Sbjct: 708 RKVLKKETHFDSIMDAEQSE 727



 Score =  140 bits (353), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 86/107 (80%)

Query: 13  LRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           L  ++ ++ K+K + L ++R +QN+LP+A +++ IID + K +V+IIAGDTGCGKSTQ+P
Sbjct: 108 LACFIAYENKKKLNQLKQLRTSQNNLPIAAHREHIIDVISKNQVLIIAGDTGCGKSTQVP 167

Query: 73  QYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE 119
           QYL++A F RIACTQPRRIA  +L++RVA+ETL +Y + + YQIRFE
Sbjct: 168 QYLLEANFDRIACTQPRRIAATALARRVAFETLDEYGSSIAYQIRFE 214



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 80/126 (63%), Gaps = 3/126 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAE 867
           RTGPGVCYRLYS EQ+S +  ++  EI RVS++SL + +V M +      FPF+E P   
Sbjct: 468 RTGPGVCYRLYSREQFSKMDAFTVSEINRVSLESLAMHIVNMNVTFSPLDFPFIEKPDMA 527

Query: 868 NIESSVRSLTQHGAI--DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
            +E ++  L + G +  DS   +T LG+ ++ LPV+IP+ K+LV+G +F Q++  L +  
Sbjct: 528 ALEEAMAGLWRQGILEPDSATTLTPLGKVIATLPVEIPIAKVLVYGCVFDQVEASLTIAA 587

Query: 926 ALNFGA 931
           +L+  +
Sbjct: 588 SLSVSS 593



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 53/64 (82%), Gaps = 2/64 (3%)

Query: 1112 KQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELF 1171
            +Q+Q+ AD  L  ++V++LDEIHER+L GDFL+G+++ L+   A++K+ILMSATIN+ELF
Sbjct: 233  RQMQIDAD--LLQHNVIILDEIHERNLSGDFLMGLLRELIRRRADLKLILMSATINLELF 290

Query: 1172 HTYF 1175
             +YF
Sbjct: 291  TSYF 294



 Score = 73.9 bits (180), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 14/131 (10%)

Query: 1196 ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDD 1255
            I+K+++ + +YP  AI D++N+ +   E   H ++K F  LHP       P+ L     D
Sbjct: 764  IIKMVVTAAVYPHYAILDQYNSYKVGNELFAHTRNKPFAVLHPNGCLALMPEALDYDRSD 823

Query: 1256 IVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNSD 1315
                  GL        S  HQL+ + + +ET+KPF+ + +R+PAL  LLL + ++  + +
Sbjct: 824  -----QGL--------SRYHQLVAFATFMETTKPFMCSSIRIPALM-LLLVAKSVQCSEE 869

Query: 1316 FTRLVFDSWIE 1326
              R++ D ++E
Sbjct: 870  RHRILCDDFVE 880



 Score = 43.5 bits (101), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 33/49 (67%)

Query: 983  DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGA 1031
            DS   +T LG+ ++ LPV+IP+ K+LV+G +F Q++  L +  +L+  +
Sbjct: 545  DSATTLTPLGKVIATLPVEIPIAKVLVYGCVFDQVEASLTIAASLSVSS 593



 Score = 43.5 bits (101), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 32/46 (69%)

Query: 1033 DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            DS   +T LG+ ++ LPV+IP+ K+LV+G +F Q++  L +  +L+
Sbjct: 545  DSATTLTPLGKVIATLPVEIPIAKVLVYGCVFDQVEASLTIAASLS 590



 Score = 41.2 bits (95), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 29/36 (80%), Gaps = 2/36 (5%)

Query: 224 KQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           +Q+Q+  D  L  ++++ILDE+HER+L GDFL+G++
Sbjct: 233 RQMQIDAD--LLQHNVIILDEIHERNLSGDFLMGLL 266


>gi|148710160|gb|EDL42106.1| mCG2071, isoform CRA_b [Mus musculus]
          Length = 642

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/373 (59%), Positives = 288/373 (77%), Gaps = 4/373 (1%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF+  A +
Sbjct: 272 LPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSH-APV 330

Query: 377 IKVPGRLYPIQLEYHPIVELDRT--KSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
           ++VPGRL+PI + Y P  E D+T  KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG
Sbjct: 331 VQVPGRLFPITVVYQP-QEADQTASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSG 389

Query: 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494
           ++EI++++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+
Sbjct: 390 MAEITTVLDAAQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSV 449

Query: 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554
           TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVCYRLY+E 
Sbjct: 450 TIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAES 509

Query: 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAI 614
            Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L + GA+
Sbjct: 510 DYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASVETAILYLQEQGAL 569

Query: 615 DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPD 674
           DS E +T +G  L+ LPVD+ +GKML+ GSMF   + VL++AA LSVQSPFT  A  + D
Sbjct: 570 DSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLD 629

Query: 675 CETARKELESNHG 687
           C TAR+ LES+ G
Sbjct: 630 CATARRPLESDQG 642



 Score =  176 bits (446), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 105/139 (75%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF+QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++A
Sbjct: 127 LPPERVSEFRRALLHYLDFQQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVA 186

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 187 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 246

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 247 TRSAATKIVFLTVGLLLRQ 265



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 1/137 (0%)

Query: 792 YEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 851
           + I +   E+   R   RTGPGVCYRLY+E  Y   A Y  PEIRRV++D+L+L +  M 
Sbjct: 480 FWISQASAEQRKGR-AGRTGPGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMS 538

Query: 852 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
           +GD R FPF+E PP  ++E+++  L + GA+DS E +T +G  L+ LPVD+ +GKML+ G
Sbjct: 539 VGDPRTFPFIEPPPPASVETAILYLQEQGALDSSEALTPIGSLLAQLPVDVVIGKMLILG 598

Query: 912 SMFHQIDTMLLLDLALN 928
           SMF   + +L +  AL+
Sbjct: 599 SMFSLAEPVLTIAAALS 615



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 265  QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSY 324

Query: 1175 FN 1176
            F+
Sbjct: 325  FS 326



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 567  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 615



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 567  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 615



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 265 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 297


>gi|148710159|gb|EDL42105.1| mCG2071, isoform CRA_a [Mus musculus]
          Length = 664

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/373 (59%), Positives = 288/373 (77%), Gaps = 4/373 (1%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF+  A +
Sbjct: 294 LPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSH-APV 352

Query: 377 IKVPGRLYPIQLEYHPIVELDRT--KSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
           ++VPGRL+PI + Y P  E D+T  KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG
Sbjct: 353 VQVPGRLFPITVVYQP-QEADQTASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSG 411

Query: 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494
           ++EI++++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+
Sbjct: 412 MAEITTVLDAAQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSV 471

Query: 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554
           TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVCYRLY+E 
Sbjct: 472 TIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAES 531

Query: 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAI 614
            Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L + GA+
Sbjct: 532 DYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASVETAILYLQEQGAL 591

Query: 615 DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPD 674
           DS E +T +G  L+ LPVD+ +GKML+ GSMF   + VL++AA LSVQSPFT  A  + D
Sbjct: 592 DSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLD 651

Query: 675 CETARKELESNHG 687
           C TAR+ LES+ G
Sbjct: 652 CATARRPLESDQG 664



 Score =  176 bits (446), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 105/139 (75%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF+QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++A
Sbjct: 149 LPPERVSEFRRALLHYLDFQQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVA 208

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 209 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 268

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 269 TRSAATKIVFLTVGLLLRQ 287



 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 1/137 (0%)

Query: 792 YEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 851
           + I +   E+   R   RTGPGVCYRLY+E  Y   A Y  PEIRRV++D+L+L +  M 
Sbjct: 502 FWISQASAEQRKGR-AGRTGPGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMS 560

Query: 852 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
           +GD R FPF+E PP  ++E+++  L + GA+DS E +T +G  L+ LPVD+ +GKML+ G
Sbjct: 561 VGDPRTFPFIEPPPPASVETAILYLQEQGALDSSEALTPIGSLLAQLPVDVVIGKMLILG 620

Query: 912 SMFHQIDTMLLLDLALN 928
           SMF   + +L +  AL+
Sbjct: 621 SMFSLAEPVLTIAAALS 637



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 287  QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSY 346

Query: 1175 FN 1176
            F+
Sbjct: 347  FS 348



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 589  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 637



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF   + +L +  AL+
Sbjct: 589  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 637



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 287 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 319


>gi|297277456|ref|XP_002801360.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Macaca
           mulatta]
          Length = 1014

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/431 (53%), Positives = 302/431 (70%), Gaps = 11/431 (2%)

Query: 384 YPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIV 442
           Y  Q+ Y P   E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG++EIS+++
Sbjct: 232 YGSQVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDLLVFLSGMAEISTVL 291

Query: 443 RAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFV 502
            A Q Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+TIDGIRFV
Sbjct: 292 EAVQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVTIDGIRFV 351

Query: 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEY 562
           VDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  Y   A Y
Sbjct: 352 VDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESDYDAFAPY 411

Query: 563 STPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTS 622
             PEIRRV++DSL+L +  M +GD R FPF+E PP  ++E+++  L   GA+DS E +T 
Sbjct: 412 PVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALDSSEALTP 471

Query: 623 LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKEL 682
           +G  L+ LPVD+ +GKML+ GSMF  ++ VL++AA LSVQSPFT  A   P+C  AR+ L
Sbjct: 472 IGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQSSPECAAARRPL 531

Query: 683 ESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSG 741
           ES+ GDP T+ N +  W+ VK +R R S+KWC+RRGIEE R YE+  LR QFK++L D G
Sbjct: 532 ESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFKELLEDHG 591

Query: 742 LITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEE 801
           L+T       +  S  R  +  E + L  +KR+  E A +RRK+L+         +EE++
Sbjct: 592 LMTGAQATQVA-DSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLRL--------QEEQD 642

Query: 802 EGERLESRTGP 812
            G   E R GP
Sbjct: 643 GGSSEEDRAGP 653



 Score =  140 bits (352), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/270 (34%), Positives = 134/270 (49%), Gaps = 55/270 (20%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S + + +LK++L  GLYPQ+A+ D FN+S    + +FH + K    LHP  VF   P+VL
Sbjct: 689  SREQLALLKLVLGRGLYPQLAVPDAFNSSRKDSDQIFHTQAKQGAVLHPTCVFAGSPEVL 748

Query: 1250 RISEDDIVDPPPGLKLPG----RNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLL 1305
               E      P      G    ++ +SSKHQLL ++SLLET+KP+LVNC+R+PALQ+LLL
Sbjct: 749  HAQE------PEASSCDGSRDDKDKMSSKHQLLSFVSLLETNKPYLVNCVRIPALQSLLL 802

Query: 1306 FSSAIHTNSDFTRLVFDSWIEVFVPLQEAKSTADV------------------NQLEH-- 1345
            FS ++ TN D +RLV D W+E    LQ A S + V                   QL H  
Sbjct: 803  FSRSLDTNGDCSRLVADGWLE----LQLADSESAVRLLAASLRLRARWEGALDRQLAHQA 858

Query: 1346 -------------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGV 1386
                               +L+++L+QF  +A+ + YS+RRL   + + +Y         
Sbjct: 859  QRRLEEEEQDVPVSPKEVATLSKELLQF--TASKIPYSLRRLTGLEAQNLYVGPQTIPAT 916

Query: 1387 PGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
            P          +    T GG  VT +L Y+
Sbjct: 917  PHLPGLFGSSTLSPHPTKGGYAVTDFLTYN 946



 Score =  139 bits (350), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/108 (57%), Positives = 83/108 (76%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQ 115
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + V YQ
Sbjct: 192 STQVPQYLLTAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVVYQ 239



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 84/120 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FPF+E PP  +
Sbjct: 390 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPAS 449

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 450 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 509



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+    F   ++ 
Sbjct: 461  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQS 520

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 521  SPECAAARRPLES 533



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 461  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 509


>gi|410982734|ref|XP_003997703.1| PREDICTED: probable ATP-dependent RNA helicase DHX34 [Felis catus]
          Length = 1099

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/494 (48%), Positives = 317/494 (64%), Gaps = 47/494 (9%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF   A +
Sbjct: 269 LPQYQVLIVDEVHERHLHNDFLLGVLRRLLPERPDLKVILMSATINISLFSSYFGG-APV 327

Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
           ++VPGRL+PI + Y P   E   +KSEKLDP P++R                        
Sbjct: 328 VQVPGRLFPITVVYQPQEAEPPASKSEKLDPRPFLR------------------------ 363

Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
                              W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+T
Sbjct: 364 ------------------RWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 405

Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
           IDGIRFVVDSGKVKEM YD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  
Sbjct: 406 IDGIRFVVDSGKVKEMGYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 465

Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           Y   A Y  PEIRRV++D+L+L +  M +GD R FPF+E PP  ++E+++  L   GA+D
Sbjct: 466 YDAFAPYPVPEIRRVALDALVLQMKSMCVGDPRTFPFIEPPPPASLETAILYLRDQGALD 525

Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
           S E +T +G  L+ LPVD+ +GKML+ GSMFH ++ VL++AA LSVQSPFT  A  +P+ 
Sbjct: 526 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLVEPVLTIAAALSVQSPFTRSAQSNPEG 585

Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
             AR+ L+S+HGDP T+ N +  W+ VK +R R S+KWC+ R IEE R YE+  +R QFK
Sbjct: 586 AAARRPLDSDHGDPFTLFNVFNTWVQVKSERSRSSRKWCRHRCIEEHRLYEMANVRRQFK 645

Query: 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK-ADNAYE 793
           ++L D GL+     P    S      R     L Q +KR+  E    RRK+L+  ++   
Sbjct: 646 ELLEDHGLLARAQAPKPGDSYSRLRQRRERRALYQ-LKRRHEEGGAHRRKVLRLQEDPGG 704

Query: 794 IEEEEEEEEGERLE 807
              EE+   G+ ++
Sbjct: 705 CSSEEDPGAGDSVD 718



 Score =  173 bits (438), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 104/137 (75%)

Query: 3   PALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGD 62
           P    E++  L  YLDF QK+ F  L +++  + +LP+AQY   I+ T+ + +VV++AGD
Sbjct: 126 PEKVSEFRRALLHYLDFGQKQAFGRLARLQRERAALPIAQYGTRILQTLKEHQVVVVAGD 185

Query: 63  TGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR 122
           TGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV++E+LSQY + VGYQIRFE  R
Sbjct: 186 TGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVSFESLSQYGSRVGYQIRFESTR 245

Query: 123 REKTKIVFITEGLLLRQ 139
              TKIVF+T GLLLRQ
Sbjct: 246 TAATKIVFLTVGLLLRQ 262



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 1/137 (0%)

Query: 792 YEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 851
           + I +   E+   R   RTGPGVC+RLY+E  Y   A Y  PEIRRV++D+L+L +  M 
Sbjct: 435 FWISQASAEQRKGR-AGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMC 493

Query: 852 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
           +GD R FPF+E PP  ++E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ G
Sbjct: 494 VGDPRTFPFIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILG 553

Query: 912 SMFHQIDTMLLLDLALN 928
           SMFH ++ +L +  AL+
Sbjct: 554 SMFHLVEPVLTIAAALS 570



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 132/267 (49%), Gaps = 52/267 (19%)

Query: 1194 VTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISE 1253
            V +LK++L  GLYPQ+A+ D FN+S    + +FH + K     HP SVF S P+VL   E
Sbjct: 748  VALLKLVLGRGLYPQLAVPDPFNSSRKDSDQIFHTQSKQGTVPHPTSVFASSPEVLHAQE 807

Query: 1254 DDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTN 1313
             +            ++ +SS+HQLL ++SLLET+K +LVNC+R+PALQ+LLLFS ++ TN
Sbjct: 808  QEAGGGEGSRD--DKDKLSSRHQLLTFVSLLETNKAYLVNCVRIPALQSLLLFSRSVDTN 865

Query: 1314 SDFTRLVFDSWIEVFVPLQEAKSTADVNQLEHS--------------------------- 1346
             D +RLV D W+E    LQ A S + V  L  S                           
Sbjct: 866  GDCSRLVADGWLE----LQLADSESAVRLLAASVRLRARWESALDRQLARQAQQRRPEVD 921

Query: 1347 -----------------LTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGS 1389
                             L+R+L++F  +A+ + YS+RRL   +++ +Y      + +P  
Sbjct: 922  QEEEEEEDPVARKEVADLSRELLKF--TASKVPYSLRRLTGLEVQNLYVGPQTITAMPSL 979

Query: 1390 NPFVAEFPMVVEETLGGVRVTPYLVYD 1416
                    +    T GG  VT +L Y+
Sbjct: 980  PGLFGSSALSPHPTKGGYAVTDFLTYN 1006



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 46/62 (74%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 262  QIQREPRLPQYQVLIVDEVHERHLHNDFLLGVLRRLLPERPDLKVILMSATINISLFSSY 321

Query: 1175 FN 1176
            F 
Sbjct: 322  FG 323



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH ++ +L +  AL+    F   ++ 
Sbjct: 522  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLVEPVLTIAAALSVQSPFTRSAQS 581

Query: 1086 EEEEEAGER 1094
              E  A  R
Sbjct: 582  NPEGAAARR 590



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 36/49 (73%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH ++ +L +  AL+
Sbjct: 522  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLVEPVLTIAAALS 570



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 262 QIQREPRLPQYQVLIVDEVHERHLHNDFLLGVL 294


>gi|170574063|ref|XP_001892655.1| ATP-dependent helicase  [Brugia malayi]
 gi|158601658|gb|EDP38512.1| ATP-dependent helicase , putative [Brugia malayi]
          Length = 1042

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/491 (48%), Positives = 349/491 (71%), Gaps = 13/491 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  D  L+ Y+V++LDEIHER+L GDFLLG++  LL    ++K+ILMSATIN+ELF  Y
Sbjct: 243 QLQTDPELNQYNVIILDEIHERNLSGDFLLGLLHNLLRKRDDLKLILMSATINLELFQNY 302

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEK----LDPGPYIRILSIIDKKYPRTER 425
           F + A +IK+ GRLYPI+L Y PI E ++ +SEK    +DPGPY+ IL +ID K  R ER
Sbjct: 303 F-KDAPVIKIAGRLYPIELRYMPIKEHNQYESEKKKAKIDPGPYLNILQMIDAKVDRNER 361

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GDVLIF++G+SEIS++  A + Y E S+ W++L LHSTLS EEQD+VF  AP G+RKCI+
Sbjct: 362 GDVLIFLNGVSEISTVAEALKIYAETSKKWVILTLHSTLSTEEQDKVFDIAPLGIRKCIL 421

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           STNIAETS+TID IRFV+DSGKV  + +D    M +L+E+W S+ASA+QRKGRAGRTGPG
Sbjct: 422 STNIAETSVTIDQIRFVIDSGKVNLVKFDSKTGMHSLREYWTSQASADQRKGRAGRTGPG 481

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAENIESS 604
           +CYRLYS++ +  +  ++  EI RVS++SL + +V M LG    +FPF+E P    +E +
Sbjct: 482 ICYRLYSQQHFDKMEPFTVSEINRVSLESLAMQIVSMDLGISPLEFPFIERPNMGELEEA 541

Query: 605 VRSLTQHGAI--DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           V SL + G +   + + +T LG+ ++++PV+IP+ K+L++G +F Q++  L++AA L+  
Sbjct: 542 VESLWRQGILVAGNTKALTPLGKIIANIPVEIPVAKVLIYGCVFEQVEPSLTIAASLATS 601

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
           SPFTNR+FR+PD    RK + S++GDP  ++NAY+E++ V+ +R   ++W + +GI+ QR
Sbjct: 602 SPFTNRSFREPDVLDRRKNIMSDNGDPFALINAYREFVEVQAERDDIRRWGREKGIDIQR 661

Query: 723 FYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKR 782
            YE+ +LR QFK++L  SG++      +  + SRER +  G+ K L  +K K A    K+
Sbjct: 662 MYEIRQLRRQFKELLEHSGILE----AENDIDSRERRINAGDRKRLNELK-KDARYEVKK 716

Query: 783 RKMLKADNAYE 793
           RK+LK +  ++
Sbjct: 717 RKVLKPEAHFD 727



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/132 (52%), Positives = 107/132 (81%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           ++   L +++ ++ + KF+ L ++R +Q +LPV++ + EI++T+   +V++IAGDTGCGK
Sbjct: 112 DYTFALSSFIAYENRLKFNQLRRLRVSQKNLPVSEKRDEILETLQNVKVLLIAGDTGCGK 171

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AG+ RIACTQPRRIA ++L++RVAYETL++Y + + YQIRFEK R  +T+
Sbjct: 172 STQVPQYLLDAGYDRIACTQPRRIAAMALARRVAYETLNEYGSKIAYQIRFEKTRTLRTR 231

Query: 128 IVFITEGLLLRQ 139
           ++F+TEGLLLRQ
Sbjct: 232 LLFVTEGLLLRQ 243



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 81/122 (66%), Gaps = 3/122 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAE 867
           RTGPG+CYRLYS++ +  +  ++  EI RVS++SL + +V M LG    +FPF+E P   
Sbjct: 477 RTGPGICYRLYSQQHFDKMEPFTVSEINRVSLESLAMQIVSMDLGISPLEFPFIERPNMG 536

Query: 868 NIESSVRSLTQHGAI--DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
            +E +V SL + G +   + + +T LG+ ++++PV+IP+ K+L++G +F Q++  L +  
Sbjct: 537 ELEEAVESLWRQGILVAGNTKALTPLGKIIANIPVEIPVAKVLIYGCVFEQVEPSLTIAA 596

Query: 926 AL 927
           +L
Sbjct: 597 SL 598



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 100/196 (51%), Gaps = 24/196 (12%)

Query: 1195 TILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISED 1254
            +ILK I+ +G++PQ AI D++N+ +   E   H + K F +LHP S     P+ L     
Sbjct: 781  SILKFIVTAGVHPQYAILDQYNSYKVGNELFAHTRRKPFAALHPNSCLALLPESLDYDRS 840

Query: 1255 DIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNS 1314
            D      GL        S+ HQL+ + S +ET+KP++ N LR+PAL  LLL  S I +  
Sbjct: 841  D-----KGL--------SNYHQLISFASFIETTKPYICNSLRVPALALLLLSKSVICSED 887

Query: 1315 DFTRLVFDSWI--------EVFVPLQEAKSTADVNQLEHSLTRDLVQFMSSATHLAYSIR 1366
            D++ ++ D +I        E F  +++A +T    QL  +L + L   +S+   L  S+ 
Sbjct: 888  DYS-IICDDFISYKFPRVMEFFSVVEQASATR--RQLTRALKKSLEGDLSNNHALVKSVV 944

Query: 1367 RLLAADLKTMYRRTGA 1382
              L +D++ +  R   
Sbjct: 945  SFLRSDVEYILTRRAC 960



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 18/93 (19%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D  L+ Y+V++LDEIHER+L GDFLLG++  LL    ++K+ILMSATIN+ELF  Y
Sbjct: 243  QLQTDPELNQYNVIILDEIHERNLSGDFLLGLLHNLLRKRDDLKLILMSATINLELFQNY 302

Query: 1175 FNRIAKDLLSGSTARSHKDVTILKVILASGLYP 1207
            F                KD  ++K+  A  LYP
Sbjct: 303  F----------------KDAPVIKI--AGRLYP 317


>gi|341877950|gb|EGT33885.1| CBN-SMGL-2 protein [Caenorhabditis brenneri]
          Length = 1091

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/492 (45%), Positives = 336/492 (68%), Gaps = 10/492 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  D+ L  Y+V++LDE+HERHL  D L+G+++ L     ++K+ILMSATIN++LF  Y
Sbjct: 247 QMEKDSLLEKYNVIILDEVHERHLTSDLLIGLLRDLCSKREDLKLILMSATINLDLFKGY 306

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI---VELDRTKSEKLDPGPYIRILSIIDKKYPRTERG 426
           F   A +++VPGRL+PI + +HPI   +E    K+ K+DP PY+RIL +IDK++P T+RG
Sbjct: 307 FEG-APVVQVPGRLFPIDVRWHPIKQFIEQSEKKTHKIDPEPYLRILELIDKQFPSTQRG 365

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D LIF++G++EIS +    + Y E+++GWI+L LHSTLS+EEQD+VF  AP G+RKCI+S
Sbjct: 366 DALIFLNGVAEISMVAEHLKNYAEQTKGWIILMLHSTLSVEEQDKVFDQAPTGVRKCILS 425

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+TIDGIRFV+DSGKV  + ++       L EFW+SKASA QRKGRAGRTGPG+
Sbjct: 426 TNVAETSVTIDGIRFVIDSGKVNLIKHEPGTGTQKLTEFWVSKASANQRKGRAGRTGPGI 485

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAENIESSV 605
           CYRLYS+EQ+  + +++  EI RVS+  + L ++ + LG D R FPF+E P  + +   +
Sbjct: 486 CYRLYSQEQFEKMEDFTQSEINRVSLQEMSLKMISLNLGLDPRTFPFIEKPSEDVLNEGL 545

Query: 606 RSLTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
            +L     + S      +TSLG  +S LPVD+P+ KMLV+G +  +++ +L++AA LSVQ
Sbjct: 546 ETLKFQRVLRSDRELLTLTSLGNMVSKLPVDVPIAKMLVYGCVVDELEVMLTVAAGLSVQ 605

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
           SPFTNR++R+ +    R  L S  GDP T++  ++EW+  K     +++W    GI+E R
Sbjct: 606 SPFTNRSYRELEIVERRASLTSPMGDPFTLIAVFREWVLQKAFEGTARRWTMENGIDEHR 665

Query: 723 FYEVTKLRSQFKQVLGDSGLITDIPGPDASL-SSRERALRHGEIKLLQAIKRKKAEEAPK 781
            YE++KLR+Q++Q+L D+GL+      +     SR+R +  GE K L  +K K      +
Sbjct: 666 LYEISKLRAQYRQILEDAGLVEKATAAETGEDDSRQRRIDQGEKKKLFDLK-KSQRNNDR 724

Query: 782 RRKMLKADNAYE 793
           R+K+L A+  ++
Sbjct: 725 RQKVLNANKHFD 736



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 104/137 (75%)

Query: 3   PALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGD 62
           P LY  ++      L F Q +KF  L K+R+ Q  LP+A+  +EI++ +   +V+I+AGD
Sbjct: 111 PWLYRHFEYAQYVALQFNQHQKFQKLQKLRKLQKELPIAERAEEIVELLKTNQVLIVAGD 170

Query: 63  TGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR 122
           TGCGKSTQ+PQYL++AG+  +ACTQPRRIAC +L++RVA+ETL+QY + V +QIRFE  +
Sbjct: 171 TGCGKSTQVPQYLLKAGYTGVACTQPRRIACTALARRVAFETLNQYGSEVAFQIRFETTK 230

Query: 123 REKTKIVFITEGLLLRQ 139
            ++TK++F+TEGLLLRQ
Sbjct: 231 SQRTKLLFLTEGLLLRQ 247



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 77/125 (61%), Gaps = 4/125 (3%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPA 866
            RTGPG+CYRLYS+EQ+  + +++  EI RVS+  + L ++ + LG D R FPF+E P  
Sbjct: 479 GRTGPGICYRLYSQEQFEKMEDFTQSEINRVSLQEMSLKMISLNLGLDPRTFPFIEKPSE 538

Query: 867 ENIESSVRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           + +   + +L     + S      +T+LG  +S LPVD+P+ KMLV+G +  +++ ML +
Sbjct: 539 DVLNEGLETLKFQRVLRSDRELLTLTSLGNMVSKLPVDVPIAKMLVYGCVVDELEVMLTV 598

Query: 924 DLALN 928
              L+
Sbjct: 599 AAGLS 603



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D+ L  Y+V++LDE+HERHL  D L+G+++ L     ++K+ILMSATIN++LF  Y
Sbjct: 247  QMEKDSLLEKYNVIILDEVHERHLTSDLLIGLLRDLCSKREDLKLILMSATINLDLFKGY 306

Query: 1175 F 1175
            F
Sbjct: 307  F 307



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 25/185 (13%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S +   +++VI+A+GLYP  +I D  N     +E   H + K F  +HP S         
Sbjct: 782  SRRTAEVIRVIIAAGLYPNFSILDPVNKYGYGQEMFAHTRLKPFAQIHPNSSIAQ----- 836

Query: 1250 RISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSA 1309
                 + +DP         +  S  HQ+  Y  LLET+KP++ N + +PA+ +LL+ +  
Sbjct: 837  --YHPESIDP-----RQASDGFSRLHQIPFYGLLLETTKPYICNVMPVPAVYSLLV-AQK 888

Query: 1310 IHTNSDFTRLVFDSWIEV-FVPLQEAKST-ADVNQLEHSLTRDLVQFMSSATHL----AY 1363
            I    ++T L+ D ++E+ F   +  +S   D  ++ + LT+ L      AT L     +
Sbjct: 889  IVIEEEWTELIVDDFLELKFRNSENCRSILLDAKEIRYELTKGL------ATKLVGDDGF 942

Query: 1364 SIRRL 1368
            S RRL
Sbjct: 943  SSRRL 947



 Score = 43.9 bits (102), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 988  VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            +TSLG  +S LPVD+P+ KMLV+G +  +++ ML +   L+
Sbjct: 563  LTSLGNMVSKLPVDVPIAKMLVYGCVVDELEVMLTVAAGLS 603



 Score = 43.9 bits (102), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 1038 VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            +TSLG  +S LPVD+P+ KMLV+G +  +++ ML +   L+
Sbjct: 563  LTSLGNMVSKLPVDVPIAKMLVYGCVVDELEVMLTVAAGLS 603



 Score = 43.9 bits (102), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  D+ L  Y+++ILDEVHERHL  D L+G++
Sbjct: 247 QMEKDSLLEKYNVIILDEVHERHLTSDLLIGLL 279


>gi|432090584|gb|ELK24000.1| Putative ATP-dependent RNA helicase DHX34 [Myotis davidii]
          Length = 761

 Score =  464 bits (1194), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/435 (52%), Positives = 296/435 (68%), Gaps = 49/435 (11%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +YF   A +
Sbjct: 270 LPQYQVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSYFGS-APV 328

Query: 377 IKVPGRLYPIQL-----------------------------------------------E 389
           ++VPGRL+PI +                                                
Sbjct: 329 VQVPGRLFPITVFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKGCPSDPGAERGVV 388

Query: 390 YHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEY 448
           Y PI  E   +KSEKLDP P++R+L  ID KYP  ERGD+L+F+SG++EIS+++ AAQ Y
Sbjct: 389 YQPIEAEPSVSKSEKLDPRPFLRVLEAIDHKYPPEERGDLLVFLSGMAEISAVLEAAQPY 448

Query: 449 NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKV 508
              +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+TIDGIRFVVDSGKV
Sbjct: 449 ASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKV 508

Query: 509 KEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIR 568
           KEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E  Y   A Y+ PEIR
Sbjct: 509 KEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESDYDAFAPYAVPEIR 568

Query: 569 RVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLS 628
           RV++D+L+L +  M +GD R FPF+E PP  ++E+++  L   GA+DS E +T +G  L+
Sbjct: 569 RVALDALVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLA 628

Query: 629 DLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGD 688
            LPVD+ +GKML+ GSMFH  + VL++AA LSVQSPFT  A  +P+   AR+ LES+ GD
Sbjct: 629 QLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQSPFTRSAQNNPEGAAARRPLESDLGD 688

Query: 689 PLTVLNAYKEWLGVK 703
           P T+ N +  W+ V+
Sbjct: 689 PFTLFNVFNTWVQVR 703



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 105/139 (75%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P    E++  L  YLDF QK+ F  L K++  + +LP+AQY   I++T+ + +VV++A
Sbjct: 125 LPPERVSEFRQALVHYLDFVQKQAFGRLAKLQRERAALPIAQYGHRILETLKEHQVVVVA 184

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE 
Sbjct: 185 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 244

Query: 121 HRREKTKIVFITEGLLLRQ 139
            R   TKIVF+T GLLLRQ
Sbjct: 245 TRSAATKIVFLTVGLLLRQ 263



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 1/137 (0%)

Query: 792 YEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 851
           + I +   E+   R   RTGPGVC+RLY+E  Y   A Y+ PEIRRV++D+L+L +  M 
Sbjct: 525 FWISQASAEQRKGR-AGRTGPGVCFRLYAESDYDAFAPYAVPEIRRVALDALVLQMKSMS 583

Query: 852 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
           +GD R FPF+E PP  ++E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ G
Sbjct: 584 VGDPRTFPFIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILG 643

Query: 912 SMFHQIDTMLLLDLALN 928
           SMFH  + +L +  AL+
Sbjct: 644 SMFHLAEPVLTIAAALS 660



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 46/62 (74%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y VL++DE+HERHLH DFLLGV++ LL    ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F 
Sbjct: 323  FG 324



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + +L +  AL+    F   ++ 
Sbjct: 612  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQSPFTRSAQN 671

Query: 1086 EEEEEAGER-LES 1097
              E  A  R LES
Sbjct: 672  NPEGAAARRPLES 684



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMFH  + +L +  AL+
Sbjct: 612  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALS 660


>gi|358341531|dbj|GAA49183.1| probable ATP-dependent RNA helicase DHX34 [Clonorchis sinensis]
          Length = 1818

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/552 (44%), Positives = 353/552 (63%), Gaps = 61/552 (11%)

Query: 314  DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
            D FL  YD LVLDE+HERH   D LLG++KCL+ +  E++++LMSATIN++LF ++F   
Sbjct: 688  DPFLKEYDALVLDEVHERHWQTDCLLGLVKCLVAARPELRVVLMSATINVKLFSSFFGN- 746

Query: 374  AKIIKVPGRLYPIQLEYHPIVELDRTKS-EKLDPGPYIRILSIIDKKYPRTERGDVLIFM 432
              I++VPGRL+PI L+Y P    +  +S ++LDP PYIR+L  ID KY  TERGD+L+F+
Sbjct: 747  CPILEVPGRLFPIDLKYIPPTPSEIAQSSDRLDPSPYIRLLQRIDAKYLATERGDLLVFL 806

Query: 433  SGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
             G++EI +++  A+ Y E+++ WI+LPLHSTLS  +Q++VFH AP+G+RKC++STNIAET
Sbjct: 807  PGMAEIQAVMEPAKAYAEQTKRWIILPLHSTLSARDQEKVFHVAPDGVRKCVLSTNIAET 866

Query: 493  SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
            S+TIDGIRFV DSG+VKE+S+D TA+M  L+EF +SKASA+QRKGRAGRTGPGVCYR Y+
Sbjct: 867  SLTIDGIRFVADSGRVKELSWDATARMRRLKEFPVSKASADQRKGRAGRTGPGVCYRFYT 926

Query: 553  EEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHG 612
            +E Y     +STPEIRRV +++L L ++ MGL DV +FPF+E P ++++E ++  L  HG
Sbjct: 927  QEDYEEFERFSTPEIRRVPLETLALQMMVMGLPDVTRFPFIEPPESKSLEEALERLQSHG 986

Query: 613  AIDSKER------------------VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLS 654
            A+  ++                   VT LGR L+DLPV+  LG+ML+  S+   ++ VLS
Sbjct: 987  ALARQDNNDGSRSSAPSPNEKTMLTVTPLGRLLADLPVEFSLGRMLIMASLLGLVEPVLS 1046

Query: 655  LAAVLSVQSPFT-NRAFRDPDCETARK-----ELESNHGDPLTVLNAYKEWLGVKK---- 704
            L A +SVQ+P T   AF     E  R+     + ES+HGD  TV+  + EWL +K     
Sbjct: 1047 LVAGMSVQNPLTPATAF--TGTERLRRTESLADYESDHGDAFTVMRVFDEWLRLKSEDVT 1104

Query: 705  ----------------DRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPG 748
                            +R   ++WC+R G +EQR +E+ +LR+QF Q+L D+GL  +   
Sbjct: 1105 QPKQESHSDPQWSRGDNRTNIRRWCRRIGAQEQRLHEMVRLRNQFSQLLRDAGLWAE--- 1161

Query: 749  PDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK-ADNAYEIEEEEEEEEGERLE 807
                ++ + + ++   ++L +A  R+      KRR++L   DN  E   E E+E     E
Sbjct: 1162 ---RITQQTKVVQKRSVELNRA--RRTERMRTKRRRLLTLQDNDTEERSESEDEN----E 1212

Query: 808  SRTGPGVCYRLY 819
               GP    R +
Sbjct: 1213 DAAGPASNLRKW 1224



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/150 (45%), Positives = 103/150 (68%), Gaps = 11/150 (7%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           +S A    + L+   + DF QK+K + ++K++  Q +LP+A Y+  +++ +   +V+++A
Sbjct: 535 LSSANLHCFHLVYDMFFDFLQKQKLTKIIKLQRDQAALPMAAYRVPLLNHLSTHQVIVVA 594

Query: 61  GDTGCGKSTQIPQYLVQA-----------GFQRIACTQPRRIACISLSKRVAYETLSQYS 109
           GDTGCGKSTQ+PQYL              G++RIA TQPRRIACISL+ RV+ E L++  
Sbjct: 595 GDTGCGKSTQVPQYLHNGDLDSNDQPCGRGYKRIAVTQPRRIACISLASRVSTELLNECG 654

Query: 110 NLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           + VGYQ+RFE+ R + T+I+F+TEGLLLRQ
Sbjct: 655 SKVGYQVRFERSRTKATQILFLTEGLLLRQ 684



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 141/314 (44%), Gaps = 95/314 (30%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVK---------EALFHCKDKGFVSLHPFS 1240
            +  D+ +LKV+LA GLYP +AIGD  N               E +FH + KGFV+L+P  
Sbjct: 1270 TQADLILLKVVLAGGLYPHLAIGDTANAYRVANRGGSAGPGAEMVFHTRAKGFVTLNPND 1329

Query: 1241 VFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSK-----------HQLLVYMSLLETSKP 1289
            VF   PDVL         P P L+    ++  S            HQLL+Y+ L+ET+KP
Sbjct: 1330 VFVRHPDVLF--------PDPKLREKTASIRDSSSDSLPSGYACDHQLLMYLDLMETTKP 1381

Query: 1290 FLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSWIEVFV----PLQEAKSTA------- 1338
            FLV+ +R+PAL TLLL+   I TNS  TRLVFDSW+EV +      Q A +TA       
Sbjct: 1382 FLVSTIRVPALPTLLLYCREIDTNSTATRLVFDSWLEVRLIDIEASQRALATAVWLRTIM 1441

Query: 1339 -----------------------------------DVNQLEHS--------LTRDLVQFM 1355
                                               DVN             L+  L  F+
Sbjct: 1442 DRLMELRLQECAQKRERQVAVDSGDVEGDQKSERLDVNPELERRCRRLRRILSEGLAAFL 1501

Query: 1356 SSATHLAYSIRRLLAADLKTMYRRT--------GAESGVPGSNPFVAEFP-----MVVEE 1402
            +++    ++I+RLLAAD+K ++R+         G  S  P SNP     P     + +  
Sbjct: 1502 AASPGGPHTIKRLLAADVKQLFRKMLPEPPGHFGVCSNKPTSNPPPLPNPESGSKIEMNM 1561

Query: 1403 TLGGVRVTPYLVYD 1416
            + GG RVT YL  D
Sbjct: 1562 SKGGYRVTCYLSID 1575



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 91/167 (54%), Gaps = 28/167 (16%)

Query: 809  RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
            RTGPGVCYR Y++E Y     +STPEIRRV +++L L ++ MGL DV +FPF+E P +++
Sbjct: 915  RTGPGVCYRFYTQEDYEEFERFSTPEIRRVPLETLALQMMVMGLPDVTRFPFIEPPESKS 974

Query: 869  IESSVRSLTQHGAIDSKER------------------VTTLGRFLSDLPVDIPLGKMLVF 910
            +E ++  L  HGA+  ++                   VT LGR L+DLPV+  LG+ML+ 
Sbjct: 975  LEEALERLQSHGALARQDNNDGSRSSAPSPNEKTMLTVTPLGRLLADLPVEFSLGRMLIM 1034

Query: 911  GSMFHQIDTMLLLDLALN----------FGAIDSKERVTSLGRFLSD 947
             S+   ++ +L L   ++          F   +   R  SL  + SD
Sbjct: 1035 ASLLGLVEPVLSLVAGMSVQNPLTPATAFTGTERLRRTESLADYESD 1081



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 47/61 (77%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D FL  YD LVLDE+HERH   D LLG++KCL+ +  E++++LMSATIN++LF ++
Sbjct: 684  QMQLDPFLKEYDALVLDEVHERHWQTDCLLGLVKCLVAARPELRVVLMSATINVKLFSSF 743

Query: 1175 F 1175
            F
Sbjct: 744  F 744



 Score = 43.9 bits (102), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  D FL  YD L+LDEVHERH   D LLG++
Sbjct: 684 QMQLDPFLKEYDALVLDEVHERHWQTDCLLGLV 716


>gi|393905614|gb|EFO20092.2| ATP-dependent helicase [Loa loa]
          Length = 693

 Score =  461 bits (1186), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/487 (48%), Positives = 338/487 (69%), Gaps = 17/487 (3%)

Query: 314 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
           +N  S   V++LDEIHER+L GDFLLG+++ L+    ++K+ILMSATIN+ELF  YF   
Sbjct: 210 NNADSKTYVIILDEIHERNLSGDFLLGLLRNLVRRRDDLKLILMSATINLELFQNYFEN- 268

Query: 374 AKIIKVPGRLYPIQLEYHPIVELDRTKSEK----LDPGPYIRILSIIDKKYPRTERGDVL 429
           A +IKV GRLYPI+L Y PI E D+ +SEK    +DP PY+ IL +ID K    ERGDVL
Sbjct: 269 APVIKVAGRLYPIELRYMPIKEHDQYESEKKKTKIDPAPYLNILQMIDAKVDSNERGDVL 328

Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
           IF++G+SEIS++  A + Y E S+ WI+L LHSTLS EEQD+VF  AP G+RKCI+STNI
Sbjct: 329 IFLNGVSEISTVAEALKVYAETSKKWIILTLHSTLSTEEQDKVFDIAPLGIRKCILSTNI 388

Query: 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYR 549
           AETS+TID IRFV+DSGKV  + +D    M +L+E+W S+ASA+QRKGRAGRTGPG+CYR
Sbjct: 389 AETSVTIDRIRFVIDSGKVNLVKFDSKTGMHSLREYWTSQASADQRKGRAGRTGPGICYR 448

Query: 550 LYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAENIESSVRSL 608
           LYS++ +  +  ++  EI RVS++SL + +V M LG    +FPF+E P    +E +V SL
Sbjct: 449 LYSQQHFDKMDPFTVSEINRVSLESLAMQIVNMNLGISPLEFPFIEKPNMGELEEAVESL 508

Query: 609 TQHGAIDSKER--VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFT 666
            + G +++     +TSLG+ ++++PV+IP+ K+L++G +F Q++  L++AA L+  SPFT
Sbjct: 509 WRQGILEAGNTKVLTSLGKIIANIPVEIPVAKVLIYGCVFEQVEPSLTIAASLATSSPFT 568

Query: 667 NRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEV 726
           NR+FR+PD    RK + S+ GDP  ++NAY+E++ V+ +R   ++W + +GI+ QR    
Sbjct: 569 NRSFREPDILDRRKNIMSDSGDPFALINAYREFVEVQAERDDIRRWGREKGIDIQRM--- 625

Query: 727 TKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKML 786
            +LR QFK +L  SG++      D    SRER +  G+ K L  +K K A    K+RK+L
Sbjct: 626 -QLRRQFKDLLEHSGILEAKSDAD----SRERRINAGDRKRLNELK-KDARYEVKKRKVL 679

Query: 787 KADNAYE 793
           K +  ++
Sbjct: 680 KPEAHFD 686



 Score =  123 bits (309), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 81/103 (78%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E+   L +++ ++ + KF+ L ++R  Q +LP+A+ + EI++T+   +V++IAGDTGCGK
Sbjct: 104 EYTFALSSFIAYENRMKFNQLRQLRIAQKNLPIAEKRDEILETLQNVKVLLIAGDTGCGK 163

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSN 110
           STQ+PQYL+ A + RIACTQPRRIA I+L++RVAYETL++Y +
Sbjct: 164 STQVPQYLLDADYDRIACTQPRRIAAIALARRVAYETLNEYGS 206



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 82/122 (67%), Gaps = 3/122 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAE 867
           RTGPG+CYRLYS++ +  +  ++  EI RVS++SL + +V M LG    +FPF+E P   
Sbjct: 440 RTGPGICYRLYSQQHFDKMDPFTVSEINRVSLESLAMQIVNMNLGISPLEFPFIEKPNMG 499

Query: 868 NIESSVRSLTQHGAIDSKER--VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
            +E +V SL + G +++     +T+LG+ ++++PV+IP+ K+L++G +F Q++  L +  
Sbjct: 500 ELEEAVESLWRQGILEAGNTKVLTSLGKIIANIPVEIPVAKVLIYGCVFEQVEPSLTIAA 559

Query: 926 AL 927
           +L
Sbjct: 560 SL 561



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            +N  S   V++LDEIHER+L GDFLLG+++ L+    ++K+ILMSATIN+ELF  YF
Sbjct: 210  NNADSKTYVIILDEIHERNLSGDFLLGLLRNLVRRRDDLKLILMSATINLELFQNYF 266



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 31/40 (77%)

Query: 988  VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 1027
            +TSLG+ ++++PV+IP+ K+L++G +F Q++  L +  +L
Sbjct: 522  LTSLGKIIANIPVEIPVAKVLIYGCVFEQVEPSLTIAASL 561



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 31/40 (77%)

Query: 1038 VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 1077
            +TSLG+ ++++PV+IP+ K+L++G +F Q++  L +  +L
Sbjct: 522  LTSLGKIIANIPVEIPVAKVLIYGCVFEQVEPSLTIAASL 561


>gi|308492656|ref|XP_003108518.1| CRE-SMGL-2 protein [Caenorhabditis remanei]
 gi|308248258|gb|EFO92210.1| CRE-SMGL-2 protein [Caenorhabditis remanei]
          Length = 1090

 Score =  461 bits (1185), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/492 (44%), Positives = 336/492 (68%), Gaps = 10/492 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  D+ L  Y+V++LDE+HERHL  D L+G+++ L     ++K+ILMSATIN++LF  Y
Sbjct: 250 QMEKDSLLEKYNVIILDEVHERHLTSDLLIGLLRDLCSKREDLKLILMSATINLDLFKGY 309

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI---VELDRTKSEKLDPGPYIRILSIIDKKYPRTERG 426
           F   A +++VPGRL+PI + +HPI   ++    K+ K+DP PY+RIL +IDK++P T+RG
Sbjct: 310 FEG-APVVQVPGRLFPIDVRWHPIKQFIDQSEKKTHKIDPEPYLRILELIDKQFPSTQRG 368

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D LIF++G++EIS +    + Y E+++GWI+L LHSTLS+EEQD+VF  +P G+RKCI+S
Sbjct: 369 DALIFLNGVAEISMVAEHLKNYAEQTKGWIILMLHSTLSVEEQDKVFDQSPTGVRKCILS 428

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+TIDGIRFV+DSGKV  + ++       L EFW+SKASA QRKGRAGRTGPG+
Sbjct: 429 TNVAETSVTIDGIRFVIDSGKVNLIKHEPGTGTQKLTEFWVSKASANQRKGRAGRTGPGI 488

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAENIESSV 605
           CYRLYS+EQ+  + +++  EI RVS+  + L ++ + LG D R FPF+E P  + +   +
Sbjct: 489 CYRLYSQEQFEKMEDFTQSEINRVSLQEMSLKMISLNLGLDPRTFPFIEKPSEDVLNEGL 548

Query: 606 RSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
             L     + S      +T+LG  +S LPV++P+ KMLV+G +  +I+ +L++AA LSVQ
Sbjct: 549 EILKFQRVLRSDRDLLTLTALGNMVSKLPVEVPIAKMLVYGCVVDEIEVMLTVAAGLSVQ 608

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
           SPFTNR++R+ +    R  L S  GDP T++  ++EW+  K     +++W    GI+E R
Sbjct: 609 SPFTNRSYRELEIVERRASLTSPMGDPFTLIAVFREWVLQKAYEGSARRWTMENGIDEHR 668

Query: 723 FYEVTKLRSQFKQVLGDSGLITDIPGPDASL-SSRERALRHGEIKLLQAIKRKKAEEAPK 781
            YE++KLRSQ++Q+L D+GL+      +     SR+R +  GE + L  +KR +     +
Sbjct: 669 LYEISKLRSQYRQILEDAGLVEKASAAETGEDDSRQRRIDQGEKRKLYDLKRSQRNND-R 727

Query: 782 RRKMLKADNAYE 793
           R+K+L A+  ++
Sbjct: 728 RQKVLNANKHFD 739



 Score =  143 bits (360), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 63/127 (49%), Positives = 92/127 (72%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + P LY  ++      L F Q +KF  L K+R+ Q  LP+A+   EI++ +   +V+I+A
Sbjct: 112 IPPWLYRHFEYAHYVALQFNQHQKFQKLQKLRKLQKELPIAERATEIVELLKTNQVLIVA 171

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL++AG+  +ACTQPRRIAC +L++RVA+ETL+QY + V +QIRFE 
Sbjct: 172 GDTGCGKSTQVPQYLLKAGYTGVACTQPRRIACTALARRVAFETLNQYGSEVAFQIRFET 231

Query: 121 HRREKTK 127
            + ++TK
Sbjct: 232 TKSQRTK 238



 Score = 97.1 bits (240), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 75/125 (60%), Gaps = 4/125 (3%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPA 866
            RTGPG+CYRLYS+EQ+  + +++  EI RVS+  + L ++ + LG D R FPF+E P  
Sbjct: 482 GRTGPGICYRLYSQEQFEKMEDFTQSEINRVSLQEMSLKMISLNLGLDPRTFPFIEKPSE 541

Query: 867 ENIESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           + +   +  L     + S      +T LG  +S LPV++P+ KMLV+G +  +I+ ML +
Sbjct: 542 DVLNEGLEILKFQRVLRSDRDLLTLTALGNMVSKLPVEVPIAKMLVYGCVVDEIEVMLTV 601

Query: 924 DLALN 928
              L+
Sbjct: 602 AAGLS 606



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D+ L  Y+V++LDE+HERHL  D L+G+++ L     ++K+ILMSATIN++LF  Y
Sbjct: 250  QMEKDSLLEKYNVIILDEVHERHLTSDLLIGLLRDLCSKREDLKLILMSATINLDLFKGY 309

Query: 1175 F 1175
            F
Sbjct: 310  F 310



 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 18/181 (9%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S +   +++VI+A+GLYP  +I D  N     +E   H + K F  +HP S         
Sbjct: 785  SRRTAEVVRVIIAAGLYPNFSILDPVNKYGYGQEMFAHTRLKPFAQIHPNSSIAQ----- 839

Query: 1250 RISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSA 1309
                 + +DP            S  HQ+  Y  LLET+KP++ N + +PA+  LL+    
Sbjct: 840  --YHPESIDP-----RQSSEGFSQLHQVPFYGLLLETTKPYICNVMPVPAVYALLVAQKI 892

Query: 1310 IHTNSDFTRLVFDSWIEV-FVPLQEAKSTA-DVNQLEHSLTRDLVQFMSSATHLAYSIRR 1367
            +    D+T L+ D ++E+ F   ++ +S   DV ++ + LT+ L   +       +S RR
Sbjct: 893  V--IEDWTELIVDDFLELKFRKSEDCRSIILDVKEIRYELTKGLASKLVGEE--GFSSRR 948

Query: 1368 L 1368
            L
Sbjct: 949  L 949



 Score = 43.5 bits (101), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  D+ L  Y+++ILDEVHERHL  D L+G++
Sbjct: 250 QMEKDSLLEKYNVIILDEVHERHLTSDLLIGLL 282



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 29/41 (70%)

Query: 988  VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            +T+LG  +S LPV++P+ KMLV+G +  +I+ ML +   L+
Sbjct: 566  LTALGNMVSKLPVEVPIAKMLVYGCVVDEIEVMLTVAAGLS 606



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 29/41 (70%)

Query: 1038 VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            +T+LG  +S LPV++P+ KMLV+G +  +I+ ML +   L+
Sbjct: 566  LTALGNMVSKLPVEVPIAKMLVYGCVVDEIEVMLTVAAGLS 606


>gi|268553037|ref|XP_002634501.1| C. briggsae CBR-SMGL-2 protein [Caenorhabditis briggsae]
          Length = 967

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/487 (45%), Positives = 332/487 (68%), Gaps = 9/487 (1%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  D+ L  Y+V++LDE+HERHL  D L+G+++ L     ++K+ILMSATIN++LF  Y
Sbjct: 187 QMEKDSLLEKYNVIILDEVHERHLTSDLLIGLLRDLCSKREDLKLILMSATINLDLFKGY 246

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI---VELDRTKSEKLDPGPYIRILSIIDKKYPRTERG 426
           F   A +++VPGRL+PI + +HPI   +E    K+ K+DP PY+RIL +IDK++P T+RG
Sbjct: 247 FEG-APVVQVPGRLFPIDVRWHPIKQFIEQSEKKTHKIDPEPYLRILELIDKQFPSTQRG 305

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D LIF++G++EIS +    + Y E+++GWI+L LHSTLS+EEQD+VF  AP G+RKCI+S
Sbjct: 306 DALIFLNGVAEISMVAEHLKNYAEQTKGWIILMLHSTLSVEEQDKVFDQAPTGVRKCILS 365

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+TIDGIRFV++SGKV  + ++       L EFW+SKASA QRKGRAGRTGPG+
Sbjct: 366 TNVAETSVTIDGIRFVIESGKVNLIKHEPGTGTQKLTEFWVSKASANQRKGRAGRTGPGI 425

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAENIESSV 605
           CYRLYS+EQ+  + +++  EI RVS+  + L ++ + LG D R FPF+E P  + +   +
Sbjct: 426 CYRLYSQEQFEKMEDFTQSEINRVSLQEMSLKMISLNLGLDPRTFPFIEKPSEDVLNEGL 485

Query: 606 RSLTQHGAIDSKERV---TSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
             L     + S   +   T+LG  +S LPVD+P+ KMLV+G +  +I+ +L++AA LSVQ
Sbjct: 486 EILKFQRVLRSDRDILTLTALGNMVSKLPVDVPIAKMLVYGCVVDEIEVMLTVAAGLSVQ 545

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
           SPFTNR++R+ +    R  L S+ GDP T++  ++EW+  K     +++W    GI+E R
Sbjct: 546 SPFTNRSYRELEIVERRASLTSSMGDPFTLIAVFREWVLQKAYEGSARRWTMENGIDEHR 605

Query: 723 FYEVTKLRSQFKQVLGDSGLITDIPGPDASL-SSRERALRHGEIKLLQAIKRKKAEEAPK 781
            YE++KLR+Q++Q+L D+GL+      +     SR+R +  GE + L  +KR +   A  
Sbjct: 606 LYEISKLRNQYRQILEDAGLVEKASAAETGEDDSRQRRIDQGEKRKLFDLKRSQRRTAEV 665

Query: 782 RRKMLKA 788
            R ++ A
Sbjct: 666 VRVIIAA 672



 Score =  147 bits (371), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 93/127 (73%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           ++P LY  ++      L F Q +KF  L K+R+ Q  LP+A+   EI++ +   +V+I+A
Sbjct: 49  INPWLYRHFEYAHYVALQFNQHQKFQKLQKLRKLQKELPIAERATEIVELLKTNQVLIVA 108

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ+PQYL+QAG+  +ACTQPRRIAC +L++RVAYETL+QY + V +QIRFE 
Sbjct: 109 GDTGCGKSTQVPQYLLQAGYTGVACTQPRRIACTALARRVAYETLNQYGSEVAFQIRFET 168

Query: 121 HRREKTK 127
            + ++TK
Sbjct: 169 TKSQRTK 175



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 4/125 (3%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPA 866
            RTGPG+CYRLYS+EQ+  + +++  EI RVS+  + L ++ + LG D R FPF+E P  
Sbjct: 419 GRTGPGICYRLYSQEQFEKMEDFTQSEINRVSLQEMSLKMISLNLGLDPRTFPFIEKPSE 478

Query: 867 ENIESSVRSLTQHGAIDSKERV---TTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           + +   +  L     + S   +   T LG  +S LPVD+P+ KMLV+G +  +I+ ML +
Sbjct: 479 DVLNEGLEILKFQRVLRSDRDILTLTALGNMVSKLPVDVPIAKMLVYGCVVDEIEVMLTV 538

Query: 924 DLALN 928
              L+
Sbjct: 539 AAGLS 543



 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 152/337 (45%), Gaps = 21/337 (6%)

Query: 1038 VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL--DLALNFVHHSEEEEEEEAGERL 1095
            +T+LG  +S LPVD+P+ KMLV+G +  +I+ ML +   L++     +    E E  ER 
Sbjct: 503  LTALGNMVSKLPVDVPIAKMLVYGCVVDEIEVMLTVAAGLSVQSPFTNRSYRELEIVERR 562

Query: 1096 ESMDANEVE-FRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHG-DFLLGVIKCLLHS 1153
             S+ ++  + F L    ++  +      S+    + + I E  L+    L    + +L  
Sbjct: 563  ASLTSSMGDPFTLIAVFREWVLQKAYEGSARRWTMENGIDEHRLYEISKLRNQYRQILED 622

Query: 1154 TAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVTILKVILASGLYPQVAIGD 1213
               V+    + T   +      ++  K  L        +   +++VI+A+GLYP  +I D
Sbjct: 623  AGLVEKASAAETGEDDSRQRRIDQGEKRKLFDLKRSQRRTAEVVRVIIAAGLYPNFSILD 682

Query: 1214 EFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISS 1273
              N     +E   H + K F  +HP S              + +DP            S 
Sbjct: 683  PVNKYGYGQEMYAHTRLKPFTQIHPNSSIAQ-------YHPESIDP-----RQSSEGFSQ 730

Query: 1274 KHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSWIEV-FVPLQ 1332
             HQ+  Y  LLET+KP++ N + +PA+ +LL+ +  I    D+T L+ D ++E+ F   +
Sbjct: 731  LHQIPFYSLLLETTKPYICNVMPVPAVYSLLV-AQKIVIEEDWTLLIVDDFLELKFRKSE 789

Query: 1333 EAKSTA-DVNQLEHSLTRDLVQFMSSATHLAYSIRRL 1368
            + +S   D  ++ + LT+ L   +       +S RRL
Sbjct: 790  DCRSVILDAKEIRYELTKGLAAKLVGEE--GFSSRRL 824



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D+ L  Y+V++LDE+HERHL  D L+G+++ L     ++K+ILMSATIN++LF  Y
Sbjct: 187  QMEKDSLLEKYNVIILDEVHERHLTSDLLIGLLRDLCSKREDLKLILMSATINLDLFKGY 246

Query: 1175 F 1175
            F
Sbjct: 247  F 247



 Score = 44.3 bits (103), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 988  VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            +T+LG  +S LPVD+P+ KMLV+G +  +I+ ML +   L+
Sbjct: 503  LTALGNMVSKLPVDVPIAKMLVYGCVVDEIEVMLTVAAGLS 543



 Score = 43.5 bits (101), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  D+ L  Y+++ILDEVHERHL  D L+G++
Sbjct: 187 QMEKDSLLEKYNVIILDEVHERHLTSDLLIGLL 219


>gi|312083715|ref|XP_003143978.1| ATP-dependent helicase [Loa loa]
          Length = 635

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/467 (48%), Positives = 327/467 (70%), Gaps = 16/467 (3%)

Query: 314 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
           +N  S   V++LDEIHER+L GDFLLG+++ L+    ++K+ILMSATIN+ELF  YF   
Sbjct: 170 NNADSKTYVIILDEIHERNLSGDFLLGLLRNLVRRRDDLKLILMSATINLELFQNYFEN- 228

Query: 374 AKIIKVPGRLYPIQLEYHPIVELDRTKSEK----LDPGPYIRILSIIDKKYPRTERGDVL 429
           A +IKV GRLYPI+L Y PI E D+ +SEK    +DP PY+ IL +ID K    ERGDVL
Sbjct: 229 APVIKVAGRLYPIELRYMPIKEHDQYESEKKKTKIDPAPYLNILQMIDAKVDSNERGDVL 288

Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
           IF++G+SEIS++  A + Y E S+ WI+L LHSTLS EEQD+VF  AP G+RKCI+STNI
Sbjct: 289 IFLNGVSEISTVAEALKVYAETSKKWIILTLHSTLSTEEQDKVFDIAPLGIRKCILSTNI 348

Query: 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYR 549
           AETS+TID IRFV+DSGKV  + +D    M +L+E+W S+ASA+QRKGRAGRTGPG+CYR
Sbjct: 349 AETSVTIDRIRFVIDSGKVNLVKFDSKTGMHSLREYWTSQASADQRKGRAGRTGPGICYR 408

Query: 550 LYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAENIESSVRSL 608
           LYS++ +  +  ++  EI RVS++SL + +V M LG    +FPF+E P    +E +V SL
Sbjct: 409 LYSQQHFDKMDPFTVSEINRVSLESLAMQIVNMNLGISPLEFPFIEKPNMGELEEAVESL 468

Query: 609 TQHGAIDSKER--VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFT 666
            + G +++     +TSLG+ ++++PV+IP+ K+L++G +F Q++  L++AA L+  SPFT
Sbjct: 469 WRQGILEAGNTKVLTSLGKIIANIPVEIPVAKVLIYGCVFEQVEPSLTIAASLATSSPFT 528

Query: 667 NRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEV 726
           NR+FR+PD    RK + S+ GDP  ++NAY+E++ V+ +R   ++W + +GI+ QR    
Sbjct: 529 NRSFREPDILDRRKNIMSDSGDPFALINAYREFVEVQAERDDIRRWGREKGIDIQRM--- 585

Query: 727 TKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKR 773
            +LR QFK +L  SG++      D    SRER +  G+ K L  +K+
Sbjct: 586 -QLRRQFKDLLEHSGILEAKSDAD----SRERRINAGDRKRLNELKK 627



 Score =  123 bits (308), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 80/101 (79%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E+   L +++ ++ + KF+ L ++R  Q +LP+A+ + EI++T+   +V++IAGDTGCGK
Sbjct: 64  EYTFALSSFIAYENRMKFNQLRQLRIAQKNLPIAEKRDEILETLQNVKVLLIAGDTGCGK 123

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQY 108
           STQ+PQYL+ A + RIACTQPRRIA I+L++RVAYETL++Y
Sbjct: 124 STQVPQYLLDADYDRIACTQPRRIAAIALARRVAYETLNEY 164



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 82/122 (67%), Gaps = 3/122 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAE 867
           RTGPG+CYRLYS++ +  +  ++  EI RVS++SL + +V M LG    +FPF+E P   
Sbjct: 400 RTGPGICYRLYSQQHFDKMDPFTVSEINRVSLESLAMQIVNMNLGISPLEFPFIEKPNMG 459

Query: 868 NIESSVRSLTQHGAIDSKER--VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
            +E +V SL + G +++     +T+LG+ ++++PV+IP+ K+L++G +F Q++  L +  
Sbjct: 460 ELEEAVESLWRQGILEAGNTKVLTSLGKIIANIPVEIPVAKVLIYGCVFEQVEPSLTIAA 519

Query: 926 AL 927
           +L
Sbjct: 520 SL 521



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            +N  S   V++LDEIHER+L GDFLLG+++ L+    ++K+ILMSATIN+ELF  YF
Sbjct: 170  NNADSKTYVIILDEIHERNLSGDFLLGLLRNLVRRRDDLKLILMSATINLELFQNYF 226



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 31/40 (77%)

Query: 988  VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 1027
            +TSLG+ ++++PV+IP+ K+L++G +F Q++  L +  +L
Sbjct: 482  LTSLGKIIANIPVEIPVAKVLIYGCVFEQVEPSLTIAASL 521



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 31/40 (77%)

Query: 1038 VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 1077
            +TSLG+ ++++PV+IP+ K+L++G +F Q++  L +  +L
Sbjct: 482  LTSLGKIIANIPVEIPVAKVLIYGCVFEQVEPSLTIAASL 521


>gi|392898679|ref|NP_500405.3| Protein SMGL-2 [Caenorhabditis elegans]
 gi|351051182|emb|CCD74037.1| Protein SMGL-2 [Caenorhabditis elegans]
          Length = 1018

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/493 (44%), Positives = 334/493 (67%), Gaps = 11/493 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  D+ L  Y+V++LDE+HERHL  D L+G+++ L     ++K+ILMSATIN++LF  Y
Sbjct: 174 QMEKDSLLEKYNVIILDEVHERHLTSDLLIGLLRDLCTKRDDLKLILMSATINLDLFKGY 233

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI---VELDRTKSEKLDPGPYIRILSIIDKKYPRTERG 426
           F   A +++VPGRL+PI + +HPI   ++    K+ K+DP PY++IL +IDK++P T+RG
Sbjct: 234 FEG-APVVQVPGRLFPIDVRWHPIKQFIDQSDKKTHKIDPEPYLKILELIDKQFPSTQRG 292

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D LIF++G++EIS +    + Y E + GWI+L LHSTLS+EEQD+VF  AP G+RKCI+S
Sbjct: 293 DALIFLNGVAEISMVAEHLKNYAELTNGWIILMLHSTLSVEEQDKVFDQAPVGIRKCILS 352

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+TIDGIRFV+DSGKV  + ++       L EFW+SKASA QRKGRAGRTGPG+
Sbjct: 353 TNVAETSVTIDGIRFVIDSGKVNLIKHEPGTGTQKLTEFWVSKASANQRKGRAGRTGPGI 412

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAENIESSV 605
           CYRLYS+EQ+  + +++  EI RVS+  + L ++ + LG D R FPF+E P  + +   +
Sbjct: 413 CYRLYSQEQFEKMDDFTVSEINRVSLQEMALKMISLNLGLDPRTFPFIEKPSEDVLNEGL 472

Query: 606 RSLTQHGAIDSKE----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
             L     + S       +T+LG  +S LPV++P+ KMLV+G +  +++ +L++AA LSV
Sbjct: 473 EVLKFQRVLRSDRGDILTLTALGNMVSKLPVEVPIAKMLVYGCVVDELEVMLTVAAGLSV 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQ 721
           QSPFTNR++R+ +    R  L S  GDP T+++ ++EW+  K     +++W    GI+E 
Sbjct: 533 QSPFTNRSYRELEIVERRASLTSPLGDPFTLISIFREWVLQKAFEGTARRWTMENGIDEH 592

Query: 722 RFYEVTKLRSQFKQVLGDSGLITDIPGPDASL-SSRERALRHGEIKLLQAIKRKKAEEAP 780
           R YE++KLR+Q++Q+L D+GL+      +     SR+R +  GE + L  +K K      
Sbjct: 593 RLYEISKLRAQYRQILEDAGLVEKASAAETGEDDSRQRRIDQGEKRKLFDLK-KSQRNND 651

Query: 781 KRRKMLKADNAYE 793
           +R+K+L A+  ++
Sbjct: 652 RRQKVLNANKHFD 664



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 5/164 (3%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPA 866
            RTGPG+CYRLYS+EQ+  + +++  EI RVS+  + L ++ + LG D R FPF+E P  
Sbjct: 406 GRTGPGICYRLYSQEQFEKMDDFTVSEINRVSLQEMALKMISLNLGLDPRTFPFIEKPSE 465

Query: 867 ENIESSVRSLTQHGAIDSKE----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           + +   +  L     + S       +T LG  +S LPV++P+ KMLV+G +  +++ ML 
Sbjct: 466 DVLNEGLEVLKFQRVLRSDRGDILTLTALGNMVSKLPVEVPIAKMLVYGCVVDELEVMLT 525

Query: 923 LDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQ 966
           +   L+  +  +      L        +  PLG      S+F +
Sbjct: 526 VAAGLSVQSPFTNRSYRELEIVERRASLTSPLGDPFTLISIFRE 569



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 17/183 (9%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S K   +++VI+A+GLYP  +I D  N     +E   H + K F  +HP S         
Sbjct: 710  SRKTAEVVRVIIAAGLYPNFSILDPVNKYGYGQEMFTHTRLKPFTQIHPNSSIAQ----- 764

Query: 1250 RISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSA 1309
                 + +DP       G +  S  HQ+  Y  LLET+KP++ N + +PA+ TLL+ +  
Sbjct: 765  --YHPETIDP-----RQGSDGFSRLHQIPFYGLLLETTKPYICNVMPVPAVYTLLV-AQK 816

Query: 1310 IHTNSDFTRLVFDSWIEV-FVPLQEAKST-ADVNQLEHSLTRDLVQFMSSATHLAYSIRR 1367
            I    D+++L  D ++E+ F    + +S   D  ++ + LT+ L   +       +S RR
Sbjct: 817  IVIEDDWSQLSIDDFLELRFRSSTDCRSVLLDAKEIRYELTKGLAAKLVGEA--GFSGRR 874

Query: 1368 LLA 1370
             LA
Sbjct: 875  RLA 877



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D+ L  Y+V++LDE+HERHL  D L+G+++ L     ++K+ILMSATIN++LF  Y
Sbjct: 174  QMEKDSLLEKYNVIILDEVHERHLTSDLLIGLLRDLCTKRDDLKLILMSATINLDLFKGY 233

Query: 1175 F 1175
            F
Sbjct: 234  F 234



 Score = 43.5 bits (101), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  D+ L  Y+++ILDEVHERHL  D L+G++
Sbjct: 174 QMEKDSLLEKYNVIILDEVHERHLTSDLLIGLL 206



 Score = 40.8 bits (94), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 40/79 (50%)

Query: 988  VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSD 1047
            +T+LG  +S LPV++P+ KMLV+G +  +++ ML +   L+  +  +      L      
Sbjct: 491  LTALGNMVSKLPVEVPIAKMLVYGCVVDELEVMLTVAAGLSVQSPFTNRSYRELEIVERR 550

Query: 1048 LPVDIPLGKMLVFGSMFHQ 1066
              +  PLG      S+F +
Sbjct: 551  ASLTSPLGDPFTLISIFRE 569



 Score = 40.8 bits (94), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 29/41 (70%)

Query: 1038 VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            +T+LG  +S LPV++P+ KMLV+G +  +++ ML +   L+
Sbjct: 491  LTALGNMVSKLPVEVPIAKMLVYGCVVDELEVMLTVAAGLS 531


>gi|195358897|ref|XP_002045263.1| GM17540 [Drosophila sechellia]
 gi|194127281|gb|EDW49324.1| GM17540 [Drosophila sechellia]
          Length = 502

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 206/368 (55%), Positives = 283/368 (76%), Gaps = 1/368 (0%)

Query: 420 YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG 479
           YP +ERGDV IF+SG++EI S+V A  EY  +   W+VLPLHS  ++ +Q +VF YAPEG
Sbjct: 1   YPASERGDVFIFVSGVNEIESVVEAVHEYATEQNHWLVLPLHSGQAIADQSKVFDYAPEG 60

Query: 480 LRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRA 539
           +RKCIVSTNIAETS+T+DG+RFVVDSGKVKEM++D T K   L+EFW+SK+SA+QRKGRA
Sbjct: 61  MRKCIVSTNIAETSLTVDGVRFVVDSGKVKEMNFDATCKGQRLKEFWVSKSSADQRKGRA 120

Query: 540 GRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 599
           GRTGPGVC+R+Y+ EQY+    Y TPEI RV +D++LL +V MGL DVR FPF+EAP  E
Sbjct: 121 GRTGPGVCFRIYTAEQYNSFEAYPTPEIYRVPLDTMLLQMVSMGLPDVRAFPFIEAPETE 180

Query: 600 NIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVL 659
            IE ++ +L QH A+  +E++T LGR L++LPV++ +GKML+ GS+F +++ +L+LAA+L
Sbjct: 181 RIEQTILALKQHCALSVEEKITPLGRSLANLPVELSIGKMLLMGSVFPEVEQLLTLAAML 240

Query: 660 SVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIE 719
           SVQ+P TNRA  D  C   R+ LES+ GD  T++  Y EW+ +K  R  +++WC+R GIE
Sbjct: 241 SVQNPLTNRAHTDQRCVRERESLESDQGDLFTLVRLYNEWVQLKMRRDGTRQWCRRLGIE 300

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
           EQRFYEVTKLR QF+++L   G++    G D+ L+S ERA RHGE++ L+A+KR++  E 
Sbjct: 301 EQRFYEVTKLRQQFQRILESCGMVV-ASGSDSQLTSAERATRHGELRQLKAMKRRQRFEQ 359

Query: 780 PKRRKMLK 787
           P++RK+LK
Sbjct: 360 PRQRKLLK 367



 Score =  137 bits (344), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 89/120 (74%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVC+R+Y+ EQY+    Y TPEI RV +D++LL +V MGL DVR FPF+EAP  E 
Sbjct: 122 RTGPGVCFRIYTAEQYNSFEAYPTPEIYRVPLDTMLLQMVSMGLPDVRAFPFIEAPETER 181

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           IE ++ +L QH A+  +E++T LGR L++LPV++ +GKML+ GS+F +++ +L L   L+
Sbjct: 182 IEQTILALKQHCALSVEEKITPLGRSLANLPVELSIGKMLLMGSVFPEVEQLLTLAAMLS 241



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 1191 HKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLR 1250
            H  V ++K++L SG YPQ+AI DEFN  +   +  FH + K FV  HP S F    + L+
Sbjct: 414  HSVVVLMKLLLGSGFYPQLAISDEFNYCKGGGQQFFHTRLKPFVLQHPNSQFAKYFEQLK 473

Query: 1251 ISEDDIVDPPPGLKLPGRNVISSKHQLLVY 1280
            ++E D++ P P    P +  +S +HQLL Y
Sbjct: 474  LTESDLL-PKPDFYTP-KLPLSKRHQLLCY 501



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 56/80 (70%), Gaps = 7/80 (8%)

Query: 149 GPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--ADNAYEIEEEEEEEEGER 206
           G D+ L+S ERA RHGE++ L+A+KR++  E P++RK+LK  A    E EEE EEE+G+ 
Sbjct: 328 GSDSQLTSAERATRHGELRQLKAMKRRQRFEQPRQRKLLKQSAGRVAEDEEEREEEQGD- 386

Query: 207 LESMDANEVEFRLKHDPKQV 226
               D  +V+FRL+ DP+Q+
Sbjct: 387 ----DMRDVDFRLRFDPRQL 402



 Score = 47.0 bits (110), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 36/48 (75%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            A+  +E++T LGR L++LPV++ +GKML+ GS+F +++ +L L   L+
Sbjct: 194  ALSVEEKITPLGRSLANLPVELSIGKMLLMGSVFPEVEQLLTLAAMLS 241



 Score = 47.0 bits (110), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 36/48 (75%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            A+  +E++T LGR L++LPV++ +GKML+ GS+F +++ +L L   L+
Sbjct: 194  ALSVEEKITPLGRSLANLPVELSIGKMLLMGSVFPEVEQLLTLAAMLS 241


>gi|320165812|gb|EFW42711.1| DEAH box polypeptide 34 [Capsaspora owczarzaki ATCC 30864]
          Length = 1280

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/511 (45%), Positives = 314/511 (61%), Gaps = 78/511 (15%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++A D  L  Y+V+V+DE+HERHL  DFLLG+++ +L    ++K++LMSATINI LF  Y
Sbjct: 248 QIANDPLLERYNVIVVDEVHERHLSSDFLLGILRYILPQRPDLKLVLMSATINIHLFSAY 307

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELD------------------RTKSEKLDPGPYIR 411
           F     I++VPGRLYPI +E+  I  +                   + K +KLDP  Y+ 
Sbjct: 308 FGNC-PIVRVPGRLYPISVEHQDIQRVSAVEAQLGVSGAAPNNVQGKKKPDKLDPRVYLH 366

Query: 412 ILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471
           IL  ID + PR ERGDVL+F+SG+ +I ++   A+ Y  +++ WIVL LHS LS+EEQDR
Sbjct: 367 ILERIDNQVPRNERGDVLVFLSGMGDILTLAEEAKAYAARTKTWIVLLLHSALSVEEQDR 426

Query: 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKAS 531
           VF  APEG+RKCI+STNIAETS+T+DG+RFV+DSGKVKEM+YD   +M  LQEF IS+AS
Sbjct: 427 VFDMAPEGMRKCILSTNIAETSVTLDGVRFVIDSGKVKEMAYDPETRMQRLQEFTISRAS 486

Query: 532 AEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFP 591
           AEQRKGRAGRTGPGVCYRLYS+ Q+    E+STPE++R+ ++++LL ++ MG G  R+F 
Sbjct: 487 AEQRKGRAGRTGPGVCYRLYSKAQFDRFPEFSTPELQRMPLEAVLLQVLAMG-GHPRQFQ 545

Query: 592 FLEAPPAENIESSVRSLTQHGAID--------------------SKERVTSLGRFLSDLP 631
           F+E PP   IE ++ SL +HGA +                    S ER+  LGR L+ LP
Sbjct: 546 FIENPPLSKIEDALASLVEHGAAERPAGLLGAQSGLDASAGVAASSERILPLGRILARLP 605

Query: 632 VDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETAR------------ 679
           VD+ +GKMLV  S+F   D   +LAA L+V +PF N        +  +            
Sbjct: 606 VDLVVGKMLVLASVFGVADPATTLAASLTVPTPFQNTVLHQYQRQQRQHLRSGGGTATGA 665

Query: 680 ---------KELESNHGDPLTVLNAYKEWLGVKKDRVR-----------------SKKWC 713
                     +  S+HGD  T++NAY EWL +K  R R                 S++W 
Sbjct: 666 SASSSTSEMSQFFSSHGDTFTLMNAYHEWLAIKLSRARASNADSAARPGSQSHHNSREWS 725

Query: 714 KRRGIEEQRFYEVTKLRSQFKQVLGDSGLIT 744
           +R G+EEQR +E+TKLR QF Q+L    LI+
Sbjct: 726 RRNGLEEQRLFEITKLRRQFLQILEQERLIS 756



 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 102/132 (77%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++LLL  +  + Q+++++  +K+   + +LP++ Y+  I+D +   +V+++AGDT CGK
Sbjct: 117 EFRLLLSHFETYLQRQRYAKTVKLAIARAALPMSHYRNAILDVLANNQVMVVAGDTACGK 176

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQ+L+ AG+ RIACTQPRR+AC++LS+RV+YETL+ Y + V YQIRFE  +   T+
Sbjct: 177 STQLPQFLMDAGYARIACTQPRRLACVALSQRVSYETLNAYGSGVAYQIRFEATKTRFTR 236

Query: 128 IVFITEGLLLRQ 139
           I+F+TEGLLLRQ
Sbjct: 237 ILFLTEGLLLRQ 248



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 82/139 (58%), Gaps = 21/139 (15%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLYS+ Q+    E+STPE++R+ ++++LL ++ MG G  R+F F+E PP   
Sbjct: 496 RTGPGVCYRLYSKAQFDRFPEFSTPELQRMPLEAVLLQVLAMG-GHPRQFQFIENPPLSK 554

Query: 869 IESSVRSLTQHGAID--------------------SKERVTTLGRFLSDLPVDIPLGKML 908
           IE ++ SL +HGA +                    S ER+  LGR L+ LPVD+ +GKML
Sbjct: 555 IEDALASLVEHGAAERPAGLLGAQSGLDASAGVAASSERILPLGRILARLPVDLVVGKML 614

Query: 909 VFGSMFHQIDTMLLLDLAL 927
           V  S+F   D    L  +L
Sbjct: 615 VLASVFGVADPATTLAASL 633



 Score = 99.8 bits (247), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 81/160 (50%), Gaps = 32/160 (20%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S     +LK IL S LYP +A+ DE N +    E +FH + K FV LHP SVF + P +L
Sbjct: 912  SSHSTALLKAILCSALYPNIALPDENNWNRRDSEQVFHTQTKNFVLLHPQSVFATDPLLL 971

Query: 1250 RISEDDIVD----------------------PPPGLKLPGRNVISSKHQLLVYMSLLETS 1287
               +   ++                      PPP          S +  LL Y++LLET+
Sbjct: 972  LAQDHGNINEVAPRADSSNTTTTTRSTTAEEPPP----------SKQPALLFYVNLLETN 1021

Query: 1288 KPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSWIEV 1327
            KP+LVN  R+PA+Q L   +++I TN D TR + D W++V
Sbjct: 1022 KPYLVNVTRVPAIQALACCANSIVTNGDGTRWIVDRWLDV 1061



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 46/61 (75%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+A D  L  Y+V+V+DE+HERHL  DFLLG+++ +L    ++K++LMSATINI LF  Y
Sbjct: 248  QIANDPLLERYNVIVVDEVHERHLSSDFLLGILRYILPQRPDLKLVLMSATINIHLFSAY 307

Query: 1175 F 1175
            F
Sbjct: 308  F 308



 Score = 48.1 bits (113), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+A D  L  Y+++++DEVHERHL  DFLLG++
Sbjct: 248 QIANDPLLERYNVIVVDEVHERHLSSDFLLGIL 280



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 1027
            G   S ER+  LGR L+ LPVD+ +GKMLV  S+F   D    L  +L
Sbjct: 586  GVAASSERILPLGRILARLPVDLVVGKMLVLASVFGVADPATTLAASL 633



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 1077
            G   S ER+  LGR L+ LPVD+ +GKMLV  S+F   D    L  +L
Sbjct: 586  GVAASSERILPLGRILARLPVDLVVGKMLVLASVFGVADPATTLAASL 633


>gi|428165227|gb|EKX34227.1| hypothetical protein GUITHDRAFT_166262 [Guillardia theta CCMP2712]
          Length = 1476

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/516 (46%), Positives = 338/516 (65%), Gaps = 42/516 (8%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            ++AAD+ LS YDV+++DE+HERHL GDFLLG++K LL    +++++LMSATIN  +F  Y
Sbjct: 644  QIAADSLLSQYDVVIVDEVHERHLTGDFLLGILKMLLLRRQDLRLVLMSATINANMFRDY 703

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPI-----VELDRTKSEK--------------------L 404
             +  A +I VPGRLYPIQ+ Y P+      ++ R +  K                    +
Sbjct: 704  LD--AVVITVPGRLYPIQVVYRPVDFDEDGQVRRAEDCKGNFAAMGVKGLTAKTKKKKAI 761

Query: 405  DPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTL 464
            DP PY+ +L +ID++YPR+ERGD+L+F+SG +EI++I     EY  +++ WIVL LHS L
Sbjct: 762  DPKPYLLLLQLIDQQYPRSERGDLLVFLSGSNEINAINDVLLEYARETKRWIVLKLHSAL 821

Query: 465  SLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQE 524
            S EEQD+VF   P G+RKCI+STNIAETS+TIDGIRFV DSGK KEM YD    + +LQE
Sbjct: 822  SAEEQDKVFDLPPPGVRKCILSTNIAETSVTIDGIRFVADSGKGKEMGYDSGVLVHSLQE 881

Query: 525  FWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGL 584
            +WISKASAEQRKGRAGRTGPGVCYRLYS+EQ+  L ++S PEI RVS+DS+LL +  +GL
Sbjct: 882  YWISKASAEQRKGRAGRTGPGVCYRLYSQEQFDYLLDFSIPEILRVSLDSVLLQMKQLGL 941

Query: 585  GDVRKFPFLEAPPAENIESSVRSLTQHGAID---SKERVTSLGRFLSDLPVDIPLGKMLV 641
            GD R F +++ PP +++ESS+  L Q   I     +ER+  LGR LS LPVD+ +GKMLV
Sbjct: 942  GDPRTFDWVQPPPRDSVESSMLVLRQLQLITEEEEEERILPLGRVLSQLPVDLRIGKMLV 1001

Query: 642  FGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC--ETARKELESNHGDPLTVLNAYKEW 699
               +    D ++++AA +S+QSPF      DP    E  R+ L S  GDP T+LN Y EW
Sbjct: 1002 LSCLLGLEDEMMTIAAGMSIQSPFLR---LDPGAEEEQERRRLMSEEGDPFTLLNVYDEW 1058

Query: 700  LGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERA 759
            +  K  +   ++W +R G+EEQR YE+T+L+ QF  +L D+ L+ +    +  + +R R 
Sbjct: 1059 VLAKGRKESGRRWSRRHGVEEQRLYEMTRLKEQFAALLKDASLLEE----ETLVQARNRV 1114

Query: 760  LR---HGEIKLLQAIKRKKAEEAPKRRKMLKADNAY 792
             R    G  +  +  K +K  +A ++ ++L  D  +
Sbjct: 1115 RRSDPEGRWRRRELKKLQKQRDASRKTRVLTLDGGF 1150



 Score =  162 bits (411), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 101/133 (75%)

Query: 7   EEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCG 66
           +E K  L  + DF+Q++  + + K++E+Q  LP+  +K +I+  V   +VV+IAGDTGCG
Sbjct: 512 KEMKRGLIMFEDFRQRKTLNKIKKMKESQRDLPIYAFKDQIVSAVKNNQVVLIAGDTGCG 571

Query: 67  KSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKT 126
           KSTQ+PQYLVQAGF  IACTQPRRI+ ISL  RV+ E L++Y + V YQIRFE +R EKT
Sbjct: 572 KSTQVPQYLVQAGFTSIACTQPRRISTISLCNRVSCEMLNEYGSQVAYQIRFESNRTEKT 631

Query: 127 KIVFITEGLLLRQ 139
           KI+F+TEGLLLRQ
Sbjct: 632 KILFLTEGLLLRQ 644



 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 95/158 (60%), Gaps = 13/158 (8%)

Query: 792  YEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 851
            Y I +   E+   R   RTGPGVCYRLYS+EQ+  L ++S PEI RVS+DS+LL +  +G
Sbjct: 882  YWISKASAEQRKGR-AGRTGPGVCYRLYSQEQFDYLLDFSIPEILRVSLDSVLLQMKQLG 940

Query: 852  LGDVRKFPFLEAPPAENIESSVRSLTQHGAID---SKERVTTLGRFLSDLPVDIPLGKML 908
            LGD R F +++ PP +++ESS+  L Q   I     +ER+  LGR LS LPVD+ +GKML
Sbjct: 941  LGDPRTFDWVQPPPRDSVESSMLVLRQLQLITEEEEEERILPLGRVLSQLPVDLRIGKML 1000

Query: 909  VFGSMFHQIDTMLLLD---------LALNFGAIDSKER 937
            V   +    D M+ +          L L+ GA + +ER
Sbjct: 1001 VLSCLLGLEDEMMTIAAGMSIQSPFLRLDPGAEEEQER 1038



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 23/139 (16%)

Query: 1191 HKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLR 1250
             + V ++K+ L++  YP + + D  N     +EA+F  K      LHP S ++S P V+ 
Sbjct: 1214 REQVNLIKLSLSTSFYPMIGLPDPENVRRRTEEAVFITKGAPQTFLHPTSAYSSCPSVVG 1273

Query: 1251 ISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAI 1310
             S+                       +L+Y  LLETSK +L+N  + P L  +L  S++I
Sbjct: 1274 ASD-----------------------VLIYSQLLETSKMWLMNTTKCPLLVIVLFCSNSI 1310

Query: 1311 HTNSDFTRLVFDSWIEVFV 1329
              N+  TRL+ D+W+EV V
Sbjct: 1311 DCNASCTRLLIDNWLEVEV 1329



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 50/64 (78%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+AAD+ LS YDV+++DE+HERHL GDFLLG++K LL    +++++LMSATIN  +F  Y
Sbjct: 644  QIAADSLLSQYDVVIVDEVHERHLTGDFLLGILKMLLLRRQDLRLVLMSATINANMFRDY 703

Query: 1175 FNRI 1178
             + +
Sbjct: 704  LDAV 707



 Score = 48.5 bits (114), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 24/28 (85%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDF 254
           Q+A D+ LS YD++I+DEVHERHL GDF
Sbjct: 644 QIAADSLLSQYDVVIVDEVHERHLTGDF 671



 Score = 46.6 bits (109), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 270 VAADYFLSSYDVLVLDEIHERHLHGDF 296
           +AAD  LS YDV+++DE+HERHL GDF
Sbjct: 645 IAADSLLSQYDVVIVDEVHERHLTGDF 671



 Score = 40.0 bits (92), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 1037 RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEEEEEEEAG 1092
            R+  LGR LS LPVD+ +GKMLV   +    D M+ +   ++    F+      EEE+  
Sbjct: 979  RILPLGRVLSQLPVDLRIGKMLVLSCLLGLEDEMMTIAAGMSIQSPFLRLDPGAEEEQER 1038

Query: 1093 ERLESMDAN 1101
             RL S + +
Sbjct: 1039 RRLMSEEGD 1047


>gi|345314067|ref|XP_003429461.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like, partial
           [Ornithorhynchus anatinus]
          Length = 735

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/392 (52%), Positives = 270/392 (68%), Gaps = 44/392 (11%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y VL++DE HERHLH DFLLGV++ LL +  ++K++LMSATINI LF  YF + A +
Sbjct: 299 LPQYQVLIVDEAHERHLHSDFLLGVLRQLLPARPDLKVVLMSATINIALFSAYFGQ-APV 357

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
           ++VPGRL+PI +                                            +G++
Sbjct: 358 VQVPGRLFPISVR-------------------------------------------NGMA 374

Query: 437 EISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITI 496
           EIS++  AAQ Y   +Q WIVLPLHSTLS+ +QD+VF  AP G+RKCI+STNIAETS+TI
Sbjct: 375 EISAVPEAAQTYATHTQRWIVLPLHSTLSVPDQDKVFDVAPPGVRKCILSTNIAETSVTI 434

Query: 497 DGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQY 556
           DG+RFV+DSGKVKEMS+D  AK+  LQEFWIS+ASAEQRKGRAGRTGPGVCYRLY+E  Y
Sbjct: 435 DGVRFVLDSGKVKEMSFDPKAKLQRLQEFWISRASAEQRKGRAGRTGPGVCYRLYAESDY 494

Query: 557 SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDS 616
              A Y  PEI+RV++D+L+L +  MGLGD R FPF+E PP+ ++E++V  L   GA+D+
Sbjct: 495 DAFAPYPVPEIQRVALDALVLQMKSMGLGDPRTFPFIEPPPSSSLETAVLYLRDQGALDA 554

Query: 617 KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCE 676
            E +T +G  L+ LPVD+ +GKML+ GS+F  ++ VL++AA LSVQSPF      +PDC 
Sbjct: 555 AEDLTPIGNLLAQLPVDVVIGKMLILGSLFQLVEPVLTVAAALSVQSPFLRSGHSNPDCG 614

Query: 677 TARKELESNHGDPLTVLNAYKEWLGVKKDRVR 708
           TARK LES+HGDP T+LNA+  W+   K ++R
Sbjct: 615 TARKPLESSHGDPFTLLNAFNAWVQDVKFKLR 646



 Score =  169 bits (428), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 104/132 (78%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++L +  YLDF QK+  + L K+++ + +LP+A+    ++  + + +VV++AGDTGCGK
Sbjct: 161 EFRLAVLQYLDFMQKQSLAKLAKLQKERAALPIARLAPRLLSVLRENQVVVVAGDTGCGK 220

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRVA+E+L+QY + VGYQIRFE  R   TK
Sbjct: 221 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVAFESLNQYGSQVGYQIRFESTRSAATK 280

Query: 128 IVFITEGLLLRQ 139
           +VF+TEGLLLRQ
Sbjct: 281 VVFLTEGLLLRQ 292



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 86/120 (71%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLY+E  Y   A Y  PEI+RV++D+L+L +  MGLGD R FPF+E PP+ +
Sbjct: 479 RTGPGVCYRLYAESDYDAFAPYPVPEIQRVALDALVLQMKSMGLGDPRTFPFIEPPPSSS 538

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E++V  L   GA+D+ E +T +G  L+ LPVD+ +GKML+ GS+F  ++ +L +  AL+
Sbjct: 539 LETAVLYLRDQGALDAAEDLTPIGNLLAQLPVDVVIGKMLILGSLFQLVEPVLTVAAALS 598



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 101/235 (42%), Gaps = 51/235 (21%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEE 1089
            GA+D+ E +T +G  L+ LPVD+ +GKML+ GS+F  ++ +L +  AL+           
Sbjct: 550  GALDAAEDLTPIGNLLAQLPVDVVIGKMLILGSLFQLVEPVLTVAAALSV---------- 599

Query: 1090 EAGERLESMDANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGD--FLLGVI 1147
                            R  H       A     SS              HGD   LL   
Sbjct: 600  -----------QSPFLRSGHSNPDCGTARKPLESS--------------HGDPFTLLNAF 634

Query: 1148 KCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVTILKVILASGLYP 1207
               +    +VK  L  +   ++   +    +++D           ++ +LK++LA GLYP
Sbjct: 635  NAWVQ---DVKFKLRHSVDELQAAASAGRDLSRD-----------ELALLKLVLARGLYP 680

Query: 1208 QVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPG 1262
            Q+A  D FN+     + +FH K K    LHP SVF S P+VL++S  D  D   G
Sbjct: 681  QLAAADHFNSCRKDSDQIFHTKTKQGTVLHPTSVFASNPEVLQVSGRDTDDQKSG 735



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 45/63 (71%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+     L  Y VL++DE HERHLH DFLLGV++ LL +  ++K++LMSATINI LF  Y
Sbjct: 292  QIQRQPTLPQYQVLIVDEAHERHLHSDFLLGVLRQLLPARPDLKVVLMSATINIALFSAY 351

Query: 1175 FNR 1177
            F +
Sbjct: 352  FGQ 354



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+D+ E +T +G  L+ LPVD+ +GKML+ GS+F  ++ +L +  AL+
Sbjct: 550  GALDAAEDLTPIGNLLAQLPVDVVIGKMLILGSLFQLVEPVLTVAAALS 598



 Score = 43.9 bits (102), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+     L  Y +LI+DE HERHL+ DFLLGV+
Sbjct: 292 QIQRQPTLPQYQVLIVDEAHERHLHSDFLLGVL 324


>gi|255082994|ref|XP_002504483.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226519751|gb|ACO65741.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 1370

 Score =  424 bits (1091), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/467 (46%), Positives = 293/467 (62%), Gaps = 34/467 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++ AD  L  +DV+V+DE HERHL+ D  LG++K +    AE ++++MSATI++E+F  Y
Sbjct: 317 QLCADPDLHEFDVVVIDEAHERHLNTDLALGLLKSITERRAEFRLVIMSATIDLEMFARY 376

Query: 370 FNRIAKIIKVPGRLYPIQLEY-----------------------HPIVELDRTKS----- 401
           F      I VPGRL+PI+L Y                       +P     R +      
Sbjct: 377 FGGC-PAISVPGRLHPIKLTYLDANLAGGRRVDRADEKPTVVGSNPSRRGFRNRDTGERF 435

Query: 402 EKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLH 461
           E++DP PY+ +L  ID KYPR +RGD+L+F+ G++EI ++    + Y  +S+ WI+LPLH
Sbjct: 436 ERIDPHPYLVLLQRIDAKYPRNQRGDLLVFLPGMAEIGAVAEHVRPYAVESKRWIILPLH 495

Query: 462 STLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMST 521
           S LS EEQD+VF  APEG+RKC++STN+AETS+TIDG+RFV DSG+ KEM +D      +
Sbjct: 496 SALSAEEQDKVFDAAPEGVRKCVLSTNVAETSVTIDGVRFVCDSGRHKEMQHDPRTGAGS 555

Query: 522 LQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSL-- 579
           LQE WISKASA+QRKGRAGRTGPGVC+RLYSE +Y    + + PEI R ++  L+L L  
Sbjct: 556 LQEGWISKASADQRKGRAGRTGPGVCFRLYSEVEYERFRKNTPPEISRANLQGLVLQLKN 615

Query: 580 VCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKM 639
           +  G  D R FP+LE PP + +ES+  +L +HGA+ S E +T LG  L+ LPVD+  GK+
Sbjct: 616 IAGGTCDARYFPWLEPPPRDALESATWALREHGALTSAETLTPLGGLLASLPVDVNAGKL 675

Query: 640 LVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCET--ARKELESNHGDPLTVLNAYK 697
           L   S+F       SLAA L+V+SPF  +        T  AR + ES HGDP T L AY 
Sbjct: 676 LALASLFGLTGPATSLAAALAVKSPFARKPGGSASGNTREARFDFESPHGDPFTALTAYA 735

Query: 698 EWLGVKKDRV-RSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLI 743
            WL V+  R   S+KWC+R G+EEQR  E+ KL+ QF      SGL 
Sbjct: 736 RWLDVRDGRRENSRKWCRRMGLEEQRLVEMAKLQRQFSDACEGSGLT 782



 Score =  143 bits (361), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 104/140 (74%), Gaps = 1/140 (0%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           + PA  +E++ +L  Y DF+Q+   + L+K+ + ++ LP+A     I+ +V +  V +IA
Sbjct: 178 LPPAAVDEYRSVLAHYEDFRQRRSLAKLVKLAKDKSKLPIAAEMDAIVRSVTEHPVTLIA 237

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE- 119
           GDTGCGKSTQ+PQYL++AGF+R+A TQPRR+A  +L++RV++ETL+++   + Y+IRF+ 
Sbjct: 238 GDTGCGKSTQVPQYLLRAGFRRVALTQPRRVAATALARRVSHETLNEWGGEIAYKIRFDT 297

Query: 120 KHRREKTKIVFITEGLLLRQ 139
            +   +T+++F+TEG+LLRQ
Sbjct: 298 TNDGARTRVLFMTEGVLLRQ 317



 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 2/122 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSL--VCMGLGDVRKFPFLEAPP 865
            RTGPGVC+RLYSE +Y    + + PEI R ++  L+L L  +  G  D R FP+LE PP
Sbjct: 574 GRTGPGVCFRLYSEVEYERFRKNTPPEISRANLQGLVLQLKNIAGGTCDARYFPWLEPPP 633

Query: 866 AENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
            + +ES+  +L +HGA+ S E +T LG  L+ LPVD+  GK+L   S+F        L  
Sbjct: 634 RDALESATWALREHGALTSAETLTPLGGLLASLPVDVNAGKLLALASLFGLTGPATSLAA 693

Query: 926 AL 927
           AL
Sbjct: 694 AL 695



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 111/250 (44%), Gaps = 39/250 (15%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+ AD  L  +DV+V+DE HERHL+ D  LG++K +    AE ++++MSATI++E+F  Y
Sbjct: 317  QLCADPDLHEFDVVVIDEAHERHLNTDLALGLLKSITERRAEFRLVIMSATIDLEMFARY 376

Query: 1175 FNRIAKDLLSGSTARSHK-DVTILKVILASGLYPQVAIGDEFNT--SETVKEALFHCKDK 1231
            F       + G   R H   +T L   LA G   +V   DE  T          F  +D 
Sbjct: 377  FGGCPAISVPG---RLHPIKLTYLDANLAGGR--RVDRADEKPTVVGSNPSRRGFRNRDT 431

Query: 1232 G----FVSLHPFSVFTSQPDV--LRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLE 1285
            G     +  HP+ V   + D    R    D++     + LPG   I          ++ E
Sbjct: 432  GERFERIDPHPYLVLLQRIDAKYPRNQRGDLL-----VFLPGMAEIG---------AVAE 477

Query: 1286 TSKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAKSTADVNQLEH 1345
              +P+ V   R      +L   SA+  +++    VFD+      P    K     N  E 
Sbjct: 478  HVRPYAVESKRW----IILPLHSAL--SAEEQDKVFDA-----APEGVRKCVLSTNVAET 526

Query: 1346 SLTRDLVQFM 1355
            S+T D V+F+
Sbjct: 527  SVTIDGVRFV 536



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 25/138 (18%)

Query: 1193 DVTILKVILASGLYPQVAIGDEFNTS-ETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRI 1251
            + +++K ILA  LYP+VA  D  N S E   +  FHC++     LHP S   + PD    
Sbjct: 901  ETSLMKAILAQALYPRVAAPDSNNASRERESDWRFHCREVRDAVLHPTSSLCA-PDHA-- 957

Query: 1252 SEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIH 1311
                   P P              +++++  +LET + FL NC R PA   LLL +S + 
Sbjct: 958  -------PAP-------------TEVVLFGEMLETHRVFLCNCARAPA-HALLLSASNVE 996

Query: 1312 TNSDFTRLVFDSWIEVFV 1329
             +    R++ D W+ + V
Sbjct: 997  CDVYAERILVDRWLMLRV 1014


>gi|195164008|ref|XP_002022841.1| GL14529 [Drosophila persimilis]
 gi|194104864|gb|EDW26907.1| GL14529 [Drosophila persimilis]
          Length = 817

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/462 (46%), Positives = 301/462 (65%), Gaps = 45/462 (9%)

Query: 357 MSATINIELFHTYFNR-IAKIIKVPGRLYPIQLEYHPIVEL-----------DRTKSEKL 404
           MSATIN+ELF  YF    A+ ++VPGRL+PI+L Y P   L           +R++  ++
Sbjct: 1   MSATINVELFQCYFKEEGARFLQVPGRLFPIKLRYMPPPALEMKAGQATARSNRSQGTRM 60

Query: 405 DPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTL 464
           DP P++++L++ID++YP ++RGDVLIF+SG++EI ++  A +EY  +   W+VLPLHS L
Sbjct: 61  DPAPFVQVLNLIDQQYPSSQRGDVLIFVSGVNEIDTVCEAIKEYAAQQTHWLVLPLHSGL 120

Query: 465 SLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQE 524
           +L EQD+VF YAPEG RKCIVSTNIAETS+T+DG+RFVVDSGKVKE+SYD   K   L+E
Sbjct: 121 ALAEQDKVFDYAPEGSRKCIVSTNIAETSLTVDGVRFVVDSGKVKEISYDAACKGQRLKE 180

Query: 525 FWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGL 584
           FW+SK+SAEQRKGRAGRTGPG C+RLYS++Q+     Y TPEI RV +D++LL +V MGL
Sbjct: 181 FWVSKSSAEQRKGRAGRTGPGFCFRLYSQQQFDAFEAYPTPEIYRVPLDTMLLQMVSMGL 240

Query: 585 GDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGS 644
            DVR FPF+E P +E IE ++ +L Q                     +++ +GKML+ G 
Sbjct: 241 PDVRAFPFIEPPESERIEQTILALKQK--------------------MELSIGKMLLKGC 280

Query: 645 MFHQIDTVLSLA-----AVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTV-LNAYKE 698
           ++ ++D +L+L         + Q     RA R     T   E   + G PL       +E
Sbjct: 281 VYRKVDQLLTLGRHAQRTKSAYQLCLHGRALR-----TGAPESGIHSGRPLHPDETPTRE 335

Query: 699 WLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRER 758
           WL +K  R  ++KWC RRGIEEQRFYEV+K+R QF+++L    +    P    +L+S ER
Sbjct: 336 WLQLKMARENTRKWCHRRGIEEQRFYEVSKMRQQFQRILESCNMAP--PSTSGALTSAER 393

Query: 759 ALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEE 800
           A RHGE++ L+A+KR++  E P+  K+LK  ++    EE +E
Sbjct: 394 ASRHGEVRQLKALKRRQRFEQPRHPKLLKHQHSGGQYEEPDE 435



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/259 (35%), Positives = 139/259 (53%), Gaps = 41/259 (15%)

Query: 1191 HKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLR 1250
            ++DV +LK++L SG YPQ+AI DEFN  +   +  FH + K F+SLHP S F    + L+
Sbjct: 466  NRDVVLLKLLLVSGFYPQLAISDEFNYCKGGGQQFFHTRMKPFISLHPNSHFAKYYECLK 525

Query: 1251 ISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAI 1310
            ++E D++ P P    P ++ +S +HQLL Y SLLET+KP+L++C+R+P   TLLLF  AI
Sbjct: 526  LAESDLI-PKPAYYTP-KHPLSERHQLLCYQSLLETAKPYLMSCIRLPVAHTLLLFGFAI 583

Query: 1311 HTNSDFTRLVFDSWIEVFVP-----------------------------LQEAKSTADVN 1341
             TN+D T++VFD W+ +  P                             L  ++    V 
Sbjct: 584  DTNADLTQMVFDGWLCLDFPVPDSGMKLLCRAIKLRRRWSSLLCSKLDELNASQKAPAVT 643

Query: 1342 QLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVP-----GSNPFVAEF 1396
                +L  +L+ FM     + Y++ RLL ADLK +Y     ++ +P       NPF  ++
Sbjct: 644  SKNITLWHELIDFM--GLDVPYAVSRLLPADLKRLYTH---QTPMPLLEKLQGNPFDIDY 698

Query: 1397 PMVVEETLGGVRVTPYLVY 1415
            P     T GG+ V+  +VY
Sbjct: 699  PPSPNMTKGGINVSENVVY 717



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 20/115 (17%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPG C+RLYS++Q+     Y TPEI RV +D++LL +V MGL DVR FPF+E P +E 
Sbjct: 197 RTGPGFCFRLYSQQQFDAFEAYPTPEIYRVPLDTMLLQMVSMGLPDVRAFPFIEPPESER 256

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           IE ++ +L Q                     +++ +GKML+ G ++ ++D +L L
Sbjct: 257 IEQTILALKQK--------------------MELSIGKMLLKGCVYRKVDQLLTL 291



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 8/80 (10%)

Query: 148 PGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNA-YEIEEEEEEEEGER 206
           P    +L+S ERA RHGE++ L+A+KR++  E P+  K+LK  ++  + EE +E  E   
Sbjct: 382 PSTSGALTSAERASRHGEVRQLKALKRRQRFEQPRHPKLLKHQHSGGQYEEPDENYE--- 438

Query: 207 LESMDANEVEFRLKHDPKQV 226
               D  +V+FRL+HD +Q+
Sbjct: 439 ----DVRDVDFRLRHDARQL 454


>gi|357630514|gb|EHJ78575.1| ATP-dependent RNA helicase [Danaus plexippus]
          Length = 582

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/304 (63%), Positives = 249/304 (81%), Gaps = 3/304 (0%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++++DN L  YDV++LDEIHERHL GDFLLGV+KCL+H+  ++K++LMSATINI+LF  Y
Sbjct: 274 QMSSDN-LPEYDVIILDEIHERHLMGDFLLGVLKCLIHTRTDIKLVLMSATINIKLFQDY 332

Query: 370 FN-RIAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           F+   A +I+VPGRL+ I+L Y PI +E   ++ +KLDP PY++I+ +ID KYP+ ERGD
Sbjct: 333 FSAESAVVIQVPGRLFSIELNYKPILIEEKPSRHDKLDPQPYVQIMQLIDSKYPKEERGD 392

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG+ EI++I  AAQ+Y EK++ WIVLPLHS LSL EQD+VF Y P+G+RKCIVST
Sbjct: 393 LLIFMSGVQEITTICDAAQQYAEKTKSWIVLPLHSALSLSEQDKVFDYPPDGVRKCIVST 452

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           NIAETS+TIDGIRFV+DSGKVKEMSYD + KM  L+EFWISKASA+QRKGRAGRTGPGVC
Sbjct: 453 NIAETSVTIDGIRFVIDSGKVKEMSYDSSTKMQRLKEFWISKASADQRKGRAGRTGPGVC 512

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
           YR+YSE+Q++ +  YSTPE+ RV I SLLL +  +G+ DVR+FPF++AP    IE ++  
Sbjct: 513 YRVYSEQQFTEMEPYSTPEVSRVPITSLLLLMTSLGVNDVRRFPFIDAPSDAAIEDALLE 572

Query: 608 LTQH 611
           L QH
Sbjct: 573 LKQH 576



 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 105/131 (80%)

Query: 12  LLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQI 71
           ++  YLDFK KEKF  L K+R+ Q+ LPVA+Y+ EI+  V  ERVVI+AGDTGCGKSTQ+
Sbjct: 147 IVSIYLDFKNKEKFDRLKKLRKAQSELPVAKYRNEIVSAVKNERVVIVAGDTGCGKSTQV 206

Query: 72  PQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFI 131
           PQYL +AGFQ IACTQPRRIACISLSKRV+YE L+Q+   VGYQIRFEK +   TKI FI
Sbjct: 207 PQYLHEAGFQNIACTQPRRIACISLSKRVSYEMLTQFDTKVGYQIRFEKSKTSDTKICFI 266

Query: 132 TEGLLLRQDSG 142
           TEGLLLRQ S 
Sbjct: 267 TEGLLLRQMSS 277



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 54/62 (87%), Gaps = 1/62 (1%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+++DN L  YDV++LDEIHERHL GDFLLGV+KCL+H+  ++K++LMSATINI+LF  Y
Sbjct: 274  QMSSDN-LPEYDVIILDEIHERHLMGDFLLGVLKCLIHTRTDIKLVLMSATINIKLFQDY 332

Query: 1175 FN 1176
            F+
Sbjct: 333  FS 334



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 53/71 (74%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYR+YSE+Q++ +  YSTPE+ RV I SLLL +  +G+ DVR+FPF++AP    
Sbjct: 506 RTGPGVCYRVYSEQQFTEMEPYSTPEVSRVPITSLLLLMTSLGVNDVRRFPFIDAPSDAA 565

Query: 869 IESSVRSLTQH 879
           IE ++  L QH
Sbjct: 566 IEDALLELKQH 576



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%), Gaps = 1/43 (2%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEI 269
           Q+++DN L  YD++ILDE+HERHL GDFLLGV+   +H   +I
Sbjct: 274 QMSSDN-LPEYDVIILDEIHERHLMGDFLLGVLKCLIHTRTDI 315


>gi|260828007|ref|XP_002608955.1| hypothetical protein BRAFLDRAFT_62128 [Branchiostoma floridae]
 gi|229294309|gb|EEN64965.1| hypothetical protein BRAFLDRAFT_62128 [Branchiostoma floridae]
          Length = 462

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/281 (65%), Positives = 233/281 (82%), Gaps = 2/281 (0%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           +V  D  LS Y ++VLDE+HERHL+GDFLLGV++ LL +  ++K++LMSATINI+LF  Y
Sbjct: 183 QVTTDPTLSQYSIIVLDEVHERHLNGDFLLGVLRALLRAREDLKMVLMSATINIKLFAGY 242

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRT-KSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           FN  A +I+VPGRLYPIQLEY PI + ++T KSE+LDP PY+R++  ID KYP TERGD+
Sbjct: 243 FNG-APVIQVPGRLYPIQLEYLPIKQEEQTSKSERLDPRPYLRVMQRIDHKYPGTERGDL 301

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIF+SG+SEI+++V A + Y ++++ WIVLPLHSTLS+EEQD+VF  APEG+RKCIVSTN
Sbjct: 302 LIFLSGMSEITAVVEAGRLYAQQTKRWIVLPLHSTLSIEEQDKVFDIAPEGVRKCIVSTN 361

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETSITIDG+RF+ DSGKVKEMSYD  AKM  LQEFWIS+ASAEQRKGRAGRTGPGVC+
Sbjct: 362 IAETSITIDGVRFICDSGKVKEMSYDPGAKMQRLQEFWISRASAEQRKGRAGRTGPGVCF 421

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRK 589
           R+Y E +Y    EY+TPEI+RV +DS +L ++ MGL + RK
Sbjct: 422 RMYDESEYDNFQEYATPEIQRVPLDSTILQMISMGLRNPRK 462



 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 94/139 (67%), Gaps = 17/139 (12%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           ++P+   E++L L  Y+DF QK+K   L K+R  Q SLP+ QY+ +I+  V + RVV++A
Sbjct: 62  LTPSRVAEFRLALLHYIDFCQKQKLQKLAKLRHDQASLPIHQYRDQIVQAVRQHRVVVVA 121

Query: 61  GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           GDTGCGKSTQ                 PRRIACISL+KRV YETL++Y + V YQ+RFE 
Sbjct: 122 GDTGCGKSTQ-----------------PRRIACISLAKRVGYETLNEYGSEVAYQVRFEG 164

Query: 121 HRREKTKIVFITEGLLLRQ 139
            + + T+I+F+TEGLLLRQ
Sbjct: 165 SKTDATRILFLTEGLLLRQ 183



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 50/62 (80%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            QV  D  LS Y ++VLDE+HERHL+GDFLLGV++ LL +  ++K++LMSATINI+LF  Y
Sbjct: 183  QVTTDPTLSQYSIIVLDEVHERHLNGDFLLGVLRALLRAREDLKMVLMSATINIKLFAGY 242

Query: 1175 FN 1176
            FN
Sbjct: 243  FN 244



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRK 857
            RTGPGVC+R+Y E +Y    EY+TPEI+RV +DS +L ++ MGL + RK
Sbjct: 413 GRTGPGVCFRMYDESEYDNFQEYATPEIQRVPLDSTILQMISMGLRNPRK 462



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 27/33 (81%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           QV TD  LS Y I++LDEVHERHL GDFLLGV+
Sbjct: 183 QVTTDPTLSQYSIIVLDEVHERHLNGDFLLGVL 215


>gi|291227921|ref|XP_002733931.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8-like
           [Saccoglossus kowalevskii]
          Length = 716

 Score =  381 bits (978), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/282 (62%), Positives = 225/282 (79%), Gaps = 2/282 (0%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++ +D+ LS Y V++LDE+HERH+H DFLLGV+KCL+    ++KI+LMSATINI LF  Y
Sbjct: 396 QIGSDSTLSQYSVIILDEVHERHIHTDFLLGVLKCLVQHRKDLKIVLMSATINITLFSNY 455

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           F+  A +I+VPGRLYPI+LEY P+  E    KSE+LDP PY+RI+  ID KY   ERGD+
Sbjct: 456 FSD-APVIQVPGRLYPIKLEYVPVGFEEQTGKSERLDPRPYLRIMQRIDNKYDSNERGDL 514

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIF+SG+SEISS+  AA+ Y  K++ WI+L LHSTLS+ EQD+VF  APEG+RKCI+STN
Sbjct: 515 LIFLSGMSEISSVSDAAKHYALKTKRWIILQLHSTLSVAEQDKVFDIAPEGVRKCIISTN 574

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDG+RF+ DSGKVKEMSYD  AKM  LQEFWIS+ASAEQRKGRAGRTGPGVC+
Sbjct: 575 IAETSVTIDGVRFIADSGKVKEMSYDTQAKMKRLQEFWISRASAEQRKGRAGRTGPGVCF 634

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF 590
           RLY E +Y    EY+TPEI+R  +D+L+L ++ MGL + R+ 
Sbjct: 635 RLYEESEYDSFQEYTTPEIQREPLDTLILQMIAMGLPNARRL 676



 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 99/148 (66%), Gaps = 25/148 (16%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++L L  Y+DF QK++F+ L K+R  Q +LP+AQYK +II+ V   +V+++AGDTGCGK
Sbjct: 282 EFRLALLHYVDFCQKQQFNKLSKLRRDQGNLPIAQYKDKIINAVRANQVIVVAGDTGCGK 341

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           S                 TQPRRIACISL+KRVA+ETL++Y + V YQIRFE  +   T+
Sbjct: 342 S-----------------TQPRRIACISLAKRVAHETLNEYGSEVAYQIRFETTKNIFTR 384

Query: 128 IVFITEGLLLRQDSGLITDIPGPDASLS 155
           I+F+TEGLLLRQ         G D++LS
Sbjct: 385 ILFLTEGLLLRQ--------IGSDSTLS 404



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 50/62 (80%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+ +D+ LS Y V++LDE+HERH+H DFLLGV+KCL+    ++KI+LMSATINI LF  Y
Sbjct: 396  QIGSDSTLSQYSVIILDEVHERHIHTDFLLGVLKCLVQHRKDLKIVLMSATINITLFSNY 455

Query: 1175 FN 1176
            F+
Sbjct: 456  FS 457



 Score = 67.0 bits (162), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 37/50 (74%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF 858
           RTGPGVC+RLY E +Y    EY+TPEI+R  +D+L+L ++ MGL + R+ 
Sbjct: 627 RTGPGVCFRLYEESEYDSFQEYTTPEIQREPLDTLILQMIAMGLPNARRL 676



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 28/33 (84%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+ +D+ LS Y ++ILDEVHERH++ DFLLGV+
Sbjct: 396 QIGSDSTLSQYSVIILDEVHERHIHTDFLLGVL 428


>gi|159463090|ref|XP_001689775.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283763|gb|EDP09513.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 915

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/427 (46%), Positives = 282/427 (66%), Gaps = 37/427 (8%)

Query: 327 EIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPI 386
           ++HERHL  DFLL +++ LL    E++++LMSATIN   F  YF   A I+++PGRLYPI
Sbjct: 209 KVHERHLTTDFLLALLRALLLQRPELRLVLMSATINCAAFADYFGG-APIVQIPGRLYPI 267

Query: 387 QLEYHP----IVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIV 442
           QL Y P      E  R +S+++DP PY+R+L  ID + P ++RGD+L+F++G ++I+++ 
Sbjct: 268 QLVYVPPEGAASEDARKRSDQIDPAPYLRLLQRIDTEVPSSQRGDLLVFVAGTADIAALC 327

Query: 443 RAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFV 502
            A   Y E+++ W++LPLH+ L LE Q++VF   P+G+RK I+STNIAETS+TIDG+RFV
Sbjct: 328 AALAPYAEQTRRWVILPLHAALPLEAQEKVFDVPPDGVRKAIISTNIAETSLTIDGVRFV 387

Query: 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEY 562
            DSG+ KEM +DV +   +LQE WIS+ASA+QRKGRAGRTGPGVCYR+Y+E QY  +  +
Sbjct: 388 CDSGRAKEMIHDVASGGGSLQEGWISRASADQRKGRAGRTGPGVCYRIYTEAQYDDMRPF 447

Query: 563 STPEIRRVSIDSLLLSLVCMGLG--DVRKFPFLEAPPAENIESSVRSLTQHGA--IDSKE 618
           S PEI RV +++++L +  +  G  D R F F++ PP + +E+S+ +L Q GA  +D +E
Sbjct: 448 SAPEIARVRLEAVVLGIKALAGGGMDPRAFGFIDPPPPDRLEASITTLKQIGALTLDGRE 507

Query: 619 RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF--TNRAFRDPDCE 676
            +T LG  LS LPVD  +GK+LV  ++F      L+LAA LSVQSPF        D + +
Sbjct: 508 GLTPLGAVLSLLPVDPAVGKLLVLSAVFGLAGPALTLAAALSVQSPFLKLGEEEHDQEAK 567

Query: 677 TARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQV 736
            AR  L S HGDPLT+LNA                          R YE+ KLR+QF ++
Sbjct: 568 AARASLVSPHGDPLTLLNA--------------------------RLYEMAKLRAQFAEL 601

Query: 737 LGDSGLI 743
           L D+G++
Sbjct: 602 LADAGIL 608



 Score =  107 bits (268), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 82/118 (69%), Gaps = 1/118 (0%)

Query: 4   ALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDT 63
           A+ EE++ LL  + DF Q+ + + L K++  + +LP A ++  I+  +   + +++AGDT
Sbjct: 98  AVVEEYRRLLPWFEDFHQRRQMARLRKLQADRAALPAAAFRDAIVSALASSQALVVAGDT 157

Query: 64  GCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKH 121
           GCGKSTQIPQYL  AG++RIA TQPRRI+ +SL++RVA E    + + VG+++  E+H
Sbjct: 158 GCGKSTQIPQYLAAAGYRRIAVTQPRRISAVSLARRVAVEAGDTHGSTVGFKV-HERH 214



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 79/125 (63%), Gaps = 4/125 (3%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG--DVRKFPFLEAPP 865
            RTGPGVCYR+Y+E QY  +  +S PEI RV +++++L +  +  G  D R F F++ PP
Sbjct: 425 GRTGPGVCYRIYTEAQYDDMRPFSAPEIARVRLEAVVLGIKALAGGGMDPRAFGFIDPPP 484

Query: 866 AENIESSVRSLTQHGA--IDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +E+S+ +L Q GA  +D +E +T LG  LS LPVD  +GK+LV  ++F      L L
Sbjct: 485 PDRLEASITTLKQIGALTLDGREGLTPLGAVLSLLPVDPAVGKLLVLSAVFGLAGPALTL 544

Query: 924 DLALN 928
             AL+
Sbjct: 545 AAALS 549



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 128/313 (40%), Gaps = 54/313 (17%)

Query: 1032 IDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEEEE 1087
            +D +E +T LG  LS LPVD  +GK+LV  ++F      L L  AL+    F+   EEE 
Sbjct: 503  LDGREGLTPLGAVLSLLPVDPAVGKLLVLSAVFGLAGPALTLAAALSVQSPFLKLGEEEH 562

Query: 1088 EEEAGERLESMDANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVI 1147
            ++EA     S+ +   +     + +  ++A     + +  L+ D    R   G  L    
Sbjct: 563  DQEAKAARASLVSPHGDPLTLLNARLYEMA--KLRAQFAELLADAGILRAGGGTAL---- 616

Query: 1148 KCLLHSTAEVKIILM------------SATINIELFHTYFNRIAKDLLSGSTAR--SHKD 1193
                 S AEV                 +A +     H    R+ +D+ +   +R  +  D
Sbjct: 617  -----SAAEVSARRRRHLQHQRGRKGGTAGLRGAELHAAKRRL-RDMQAEQASRPLTPAD 670

Query: 1194 VTILKVILASGLYPQVAIGDEFNTSETVKEA-LFHCKDKGFVSLHPFSVFTSQPDVLRIS 1252
            V +L+ +LA  LYP++A+GDE N      +   F       + LHP SV     +     
Sbjct: 671  VGLLRHLLAVCLYPRIAVGDEANPQRRDADCRFFTATGASDLVLHPGSVLAGAAN----- 725

Query: 1253 EDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHT 1312
                       ++P       + Q+L Y  L+ET + +L     + AL  LLL +  +  
Sbjct: 726  -----------EVP-------RGQVLAYTELIETRRQYLSGLTPLWALPALLLAARRLDC 767

Query: 1313 NSDFTRLVFDSWI 1325
            +    R + D W+
Sbjct: 768  DVGCGRWLVDGWL 780



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 31/45 (68%)

Query: 1132 EIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            ++HERHL  DFLL +++ LL    E++++LMSATIN   F  YF 
Sbjct: 209  KVHERHLTTDFLLALLRALLLQRPELRLVLMSATINCAAFADYFG 253


>gi|159463092|ref|XP_001689776.1| DEAD/DEAH box helicase [Chlamydomonas reinhardtii]
 gi|158283764|gb|EDP09514.1| DEAD/DEAH box helicase [Chlamydomonas reinhardtii]
          Length = 1407

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/498 (43%), Positives = 307/498 (61%), Gaps = 66/498 (13%)

Query: 327 EIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPI 386
           ++HERHL  DFLL +++ LL    E++++LMSATIN   F  YF   A I+++PGRLYPI
Sbjct: 209 KVHERHLTTDFLLALLRALLLQRPELRLVLMSATINCAAFADYFGG-APIVQIPGRLYPI 267

Query: 387 QLEYHP----IVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIV 442
           QL Y P      E  R +S+++DP PY+R+L  ID + P ++RGD+L+F++G ++I+++ 
Sbjct: 268 QLVYVPPEGAASEDARKRSDQIDPAPYLRLLQRIDTEVPSSQRGDLLVFVAGTADIAALC 327

Query: 443 RAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFV 502
            A   Y E+++ W++LPLH+ L LE Q++VF   P+G+RK I+STNIAETS+TIDG+RFV
Sbjct: 328 AALAPYAEQTRRWVILPLHAALPLEAQEKVFDVPPDGVRKAIISTNIAETSLTIDGVRFV 387

Query: 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEY 562
            DSG+ KEM +DV +   +LQE WIS+ASA+QRKGRAGRTGPGVCYR+Y+E QY  +  +
Sbjct: 388 CDSGRAKEMIHDVASGGGSLQEGWISRASADQRKGRAGRTGPGVCYRIYTEAQYDDMRPF 447

Query: 563 STPEIRRVSIDSLLLSLVCMGLG--DVRKFPFLEAPPAENIESSVRSLTQHGA--IDSKE 618
           S PEI RV +++++L +  +  G  D R F F++ PP + +E+S+ +L Q GA  +D +E
Sbjct: 448 SAPEIARVRLEAVVLGIKALAGGGMDPRAFGFIDPPPPDRLEASITTLKQIGALTLDGRE 507

Query: 619 RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF--TNRAFRDPDCE 676
            +T LG  LS LPVD  +GK+LV  ++F      L+LAA LSVQSPF        D + +
Sbjct: 508 GLTPLGAVLSLLPVDPAVGKLLVLSAVFGLAGPALTLAAALSVQSPFLKLGEEEHDQEAK 567

Query: 677 TARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQV 736
            AR  L S HGDPLT+LNA                          R YE+ KLR+QF ++
Sbjct: 568 AARASLVSPHGDPLTLLNA--------------------------RLYEMAKLRAQFAEL 601

Query: 737 LGDSGLITDIPGPDASLSSRE-------------------RALRHGEIKLLQAIKRK--- 774
           L D+G++    G   +LS+ E                     LR  E   L A KR+   
Sbjct: 602 LADAGILRA--GGGTALSAAEVSARRRRHLQHQRGRKGGTAGLRGAE---LHAAKRRLRD 656

Query: 775 -KAEEAPKR-RKMLKADN 790
            +AE   KR RK+LK D 
Sbjct: 657 MQAERERKRGRKVLKVDK 674



 Score =  107 bits (268), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 82/118 (69%), Gaps = 1/118 (0%)

Query: 4   ALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDT 63
           A+ EE++ LL  + DF Q+ + + L K++  + +LP A ++  I+  +   + +++AGDT
Sbjct: 98  AVVEEYRRLLPWFEDFHQRRQMARLRKLQADRAALPAAAFRDAIVSALASSQALVVAGDT 157

Query: 64  GCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKH 121
           GCGKSTQIPQYL  AG++RIA TQPRRI+ +SL++RVA E    + + VG+++  E+H
Sbjct: 158 GCGKSTQIPQYLAAAGYRRIAVTQPRRISAVSLARRVAVEAGDTHGSTVGFKV-HERH 214



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 79/125 (63%), Gaps = 4/125 (3%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG--DVRKFPFLEAPP 865
            RTGPGVCYR+Y+E QY  +  +S PEI RV +++++L +  +  G  D R F F++ PP
Sbjct: 425 GRTGPGVCYRIYTEAQYDDMRPFSAPEIARVRLEAVVLGIKALAGGGMDPRAFGFIDPPP 484

Query: 866 AENIESSVRSLTQHGA--IDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +E+S+ +L Q GA  +D +E +T LG  LS LPVD  +GK+LV  ++F      L L
Sbjct: 485 PDRLEASITTLKQIGALTLDGREGLTPLGAVLSLLPVDPAVGKLLVLSAVFGLAGPALTL 544

Query: 924 DLALN 928
             AL+
Sbjct: 545 AAALS 549



 Score = 43.9 bits (102), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 1032 IDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEEEE 1087
            +D +E +T LG  LS LPVD  +GK+LV  ++F      L L  AL+    F+   EEE 
Sbjct: 503  LDGREGLTPLGAVLSLLPVDPAVGKLLVLSAVFGLAGPALTLAAALSVQSPFLKLGEEEH 562

Query: 1088 EEEA 1091
            ++EA
Sbjct: 563  DQEA 566



 Score = 41.6 bits (96), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 31/45 (68%)

Query: 1132 EIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            ++HERHL  DFLL +++ LL    E++++LMSATIN   F  YF 
Sbjct: 209  KVHERHLTTDFLLALLRALLLQRPELRLVLMSATINCAAFADYFG 253


>gi|303281206|ref|XP_003059895.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458550|gb|EEH55847.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1309

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/486 (43%), Positives = 301/486 (61%), Gaps = 55/486 (11%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-EVKIILMSATINIELFHT 368
           ++A+D  L  +DV+V+DE HERH + D LLG+++ +L     + +I++MSAT+N+ELF +
Sbjct: 233 QLASDGDLRKFDVVVVDEAHERHCNTDLLLGLLRGVLDRRPHDFRIVIMSATMNLELFAS 292

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVEL--------------------------DRTKSE 402
           YF     +I+VPGRL+PIQ  + P                               R + +
Sbjct: 293 YFGGC-PVIRVPGRLHPIQTHWIPSAPAALAGRGRDAIDDAPALVGGEKPPRVQPRGRQD 351

Query: 403 KLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHS 462
           ++DP PY+ +L  ID  YPR ERGD+L+F+SG++EI+++    + Y  +S+ W++LPLH 
Sbjct: 352 RIDPQPYLLLLQRIDANYPRNERGDLLVFLSGVAEIAAVAERLKPYAAESRRWVILPLHG 411

Query: 463 TLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVT--AKMS 520
            LS  EQD VF  AP G RKC+++TN+AETSITIDGIRFV DSG+ KEM+ D      +S
Sbjct: 412 GLSASEQDLVFDGAPHGARKCVLATNVAETSITIDGIRFVCDSGRHKEMTRDNAGGGGVS 471

Query: 521 TLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSL- 579
            L+E WISKASAEQRKGRAGRTGPGVC+R+Y E ++      + PEIRR S++SL L+L 
Sbjct: 472 ALREGWISKASAEQRKGRAGRTGPGVCFRMYGENEFQKFKASTPPEIRRASLESLTLTLK 531

Query: 580 -VCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDS-------------KERVTSLGR 625
            +     D R FP++E PP + +E++V +L +HGA+                ER+T LG 
Sbjct: 532 QIAGDACDSRTFPWIEPPPNDALEAAVWNLREHGALRRVLLPRAGPRATAFDERLTPLGA 591

Query: 626 FLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR-----AFRDPDCETARK 680
            L+ LPVD+  GK+LV+ ++F       ++AA LSV+SPFT +       R+ D    R 
Sbjct: 592 LLATLPVDVSSGKLLVYAALFGLAGPSSTIAAALSVKSPFTQKGAGGGGGREDD---QRA 648

Query: 681 ELESNHGDPLTVLNAYKEWLGVKKD--RVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLG 738
           E +S HGDP T+L A+  WL  + D     +++WC+RRGIEEQR  E  KL+ QF+ ++ 
Sbjct: 649 EFQSPHGDPFTLLKAFASWLRARDDARERDTRRWCRRRGIEEQRLIETAKLQRQFQDMID 708

Query: 739 DSGLIT 744
            SG+ T
Sbjct: 709 ASGMTT 714



 Score =  133 bits (334), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 94/133 (70%), Gaps = 1/133 (0%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           ++K  L  Y D+ QK  F  L+++ + + +LP+A     I+D V    V +IAGDTGCGK
Sbjct: 101 QYKKCLSFYEDYAQKTNFERLVQMAKDKANLPIAAEHDAIVDAVRNHGVTLIAGDTGCGK 160

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREK-T 126
           STQ+PQYL++AGF ++A TQPRRI+ I+L++RV+ ETL+++   + Y+IRF+     + T
Sbjct: 161 STQVPQYLLRAGFSKLAMTQPRRISAIALARRVSRETLNEHGAEIAYKIRFDSTSEGRVT 220

Query: 127 KIVFITEGLLLRQ 139
           K +F+TEG+LLRQ
Sbjct: 221 KALFLTEGVLLRQ 233



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 73/122 (59%), Gaps = 15/122 (12%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSL--VCMGLGDVRKFPFLEAPP 865
            RTGPGVC+R+Y E ++      + PEIRR S++SL L+L  +     D R FP++E PP
Sbjct: 491 GRTGPGVCFRMYGENEFQKFKASTPPEIRRASLESLTLTLKQIAGDACDSRTFPWIEPPP 550

Query: 866 AENIESSVRSLTQHGAIDS-------------KERVTTLGRFLSDLPVDIPLGKMLVFGS 912
            + +E++V +L +HGA+                ER+T LG  L+ LPVD+  GK+LV+ +
Sbjct: 551 NDALEAAVWNLREHGALRRVLLPRAGPRATAFDERLTPLGALLATLPVDVSSGKLLVYAA 610

Query: 913 MF 914
           +F
Sbjct: 611 LF 612



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL-HSTAEVKIILMSATINIELFHT 1173
            Q+A+D  L  +DV+V+DE HERH + D LLG+++ +L     + +I++MSAT+N+ELF +
Sbjct: 233  QLASDGDLRKFDVVVVDEAHERHCNTDLLLGLLRGVLDRRPHDFRIVIMSATMNLELFAS 292

Query: 1174 YFN 1176
            YF 
Sbjct: 293  YFG 295


>gi|302834022|ref|XP_002948574.1| hypothetical protein VOLCADRAFT_116833 [Volvox carteri f.
           nagariensis]
 gi|300266261|gb|EFJ50449.1| hypothetical protein VOLCADRAFT_116833 [Volvox carteri f.
           nagariensis]
          Length = 1227

 Score =  366 bits (939), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 200/429 (46%), Positives = 281/429 (65%), Gaps = 35/429 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E+A D  L++YDV+VLDE+HERHL  DFLL +++ LL    E++++LMSATIN   F  Y
Sbjct: 281 ELAGDPTLAAYDVVVLDEVHERHLTTDFLLALLRALLLQRPELRLVLMSATINCAAFAEY 340

Query: 370 FNRIAKIIKVPGRLYPIQLEYHP------------------------------IVELDRT 399
           F   A I+++PGRLYPIQL Y P                                     
Sbjct: 341 FGG-APIVQIPGRLYPIQLVYVPPEAAESEEALRRRDGARRRAGGAGSGGSSGSRSAASP 399

Query: 400 KSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLP 459
            S+++DP PY+R+L  ID + P ++RGD+LIF++G ++I+++  A   Y E+++ W++LP
Sbjct: 400 ASDQIDPAPYLRLLQRIDSEIPSSQRGDLLIFVAGTADITALCTALAPYAEQTRRWVLLP 459

Query: 460 LHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKM 519
           LH+ L LE Q++VF   P+G+RK I+STNIAETS+TIDGIRFV DSG+ KEM +DV +  
Sbjct: 460 LHAALPLEAQEKVFDVPPDGVRKAIISTNIAETSLTIDGIRFVADSGRAKEMIHDVASGG 519

Query: 520 STLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSL 579
            +LQE WIS+ASA+QRKGRAGRTGPG CYR+YSE  Y+ +  +S PEI RV +++++L +
Sbjct: 520 GSLQEGWISRASADQRKGRAGRTGPGTCYRMYSEALYNEMRAFSAPEIARVRLEAVVLGI 579

Query: 580 VCM-GLG-DVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLG 637
             M G G D R F F++ PP + +E+S+ +L Q GA++  E++T LG  LS LPVD+ +G
Sbjct: 580 KAMAGSGMDPRAFGFIDPPPPDRLEASITNLKQIGALNRSEKLTPLGAVLSLLPVDVSIG 639

Query: 638 KMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRA--FRDPDCETARKELESNHGDPLTVLNA 695
           K+LV G +F      L+LAA LSVQSPF        D + + AR  L S HGD LT+LN 
Sbjct: 640 KLLVLGCVFGLAGPTLTLAAALSVQSPFLKLGDEEHDQEAKAARAALVSPHGDALTLLNV 699

Query: 696 YKEWLGVKK 704
           ++ WL VK+
Sbjct: 700 FEAWLAVKQ 708



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 94/165 (56%), Gaps = 27/165 (16%)

Query: 5   LYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTG 64
           L  E++ LL  + DF Q+ + S L K++  + +LP A ++  ++  +   + +++AGDTG
Sbjct: 120 LVGEYRRLLPWFEDFFQRRQISRLRKLQSDRLALPAAGFRGSVLRALEGSQALVVAGDTG 179

Query: 65  CGKSTQIPQYL--VQAG--FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           CGKSTQIPQYL  V  G  ++RIA TQPRRI+ +SL++RVA E+   +   V Y++RF  
Sbjct: 180 CGKSTQIPQYLAAVAGGSRYRRIAVTQPRRISAVSLARRVAVESCDAHGTTVAYKVRFSN 239

Query: 121 -----------------HR------REKTKIVFITEGLLLRQDSG 142
                            H          ++IVF TEG+LLR+ +G
Sbjct: 240 SVAVLPPRPVRVVPPPWHNSVPSVLSADSRIVFCTEGILLRELAG 284



 Score =  106 bits (265), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 80/123 (65%), Gaps = 2/123 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCM-GLG-DVRKFPFLEAPP 865
            RTGPG CYR+YSE  Y+ +  +S PEI RV +++++L +  M G G D R F F++ PP
Sbjct: 540 GRTGPGTCYRMYSEALYNEMRAFSAPEIARVRLEAVVLGIKAMAGSGMDPRAFGFIDPPP 599

Query: 866 AENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
            + +E+S+ +L Q GA++  E++T LG  LS LPVD+ +GK+LV G +F      L L  
Sbjct: 600 PDRLEASITNLKQIGALNRSEKLTPLGAVLSLLPVDVSIGKLLVLGCVFGLAGPTLTLAA 659

Query: 926 ALN 928
           AL+
Sbjct: 660 ALS 662



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 45/62 (72%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            ++A D  L++YDV+VLDE+HERHL  DFLL +++ LL    E++++LMSATIN   F  Y
Sbjct: 281  ELAGDPTLAAYDVVVLDEVHERHLTTDFLLALLRALLLQRPELRLVLMSATINCAAFAEY 340

Query: 1175 FN 1176
            F 
Sbjct: 341  FG 342



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 1028 NFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHS 1083
              GA++  E++T LG  LS LPVD+ +GK+LV G +F      L L  AL+    F+   
Sbjct: 612  QIGALNRSEKLTPLGAVLSLLPVDVSIGKLLVLGCVFGLAGPTLTLAAALSVQSPFLKLG 671

Query: 1084 EEEEEEEA 1091
            +EE ++EA
Sbjct: 672  DEEHDQEA 679



 Score = 44.7 bits (104), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query: 978  NFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
              GA++  E++T LG  LS LPVD+ +GK+LV G +F      L L  AL+
Sbjct: 612  QIGALNRSEKLTPLGAVLSLLPVDVSIGKLLVLGCVFGLAGPTLTLAAALS 662



 Score = 44.3 bits (103), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 23/129 (17%)

Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
            S  D+ +L+ +L + LYP++A+GDE N     ++  FH      + LH            
Sbjct: 957  SPGDLGLLRHLLVASLYPRLAVGDEANLQRREQDCRFHTSQVSDLVLH------------ 1004

Query: 1250 RISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSA 1309
                       PG  L G +    + Q+L+Y  L+ET + +L     + +L  LLL +  
Sbjct: 1005 -----------PGSTLFGFSNNIPRGQVLLYTELIETRRQYLSGVTPLWSLPALLLVARR 1053

Query: 1310 IHTNSDFTR 1318
            +  ++   R
Sbjct: 1054 LDCDAAAAR 1062



 Score = 41.6 bits (96), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 23/28 (82%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDF 254
           ++A D  L++YD+++LDEVHERHL  DF
Sbjct: 281 ELAGDPTLAAYDVVVLDEVHERHLTTDF 308


>gi|47227881|emb|CAG09044.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 939

 Score =  363 bits (932), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 176/326 (53%), Positives = 234/326 (71%), Gaps = 27/326 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  D  L+ Y V+++DE+HERHLH DFLLGV++ L+    ++++ILMSATINI+LF  Y
Sbjct: 249 QIQQDRTLAQYQVVIVDEVHERHLHCDFLLGVLRTLVAERPDLRLILMSATINIQLFSDY 308

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIV-ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           F+  A +++VPGRL+PIQ+ Y PI  E   ++SEK+DP PY+RIL  ID++YP  ERGD+
Sbjct: 309 FSG-APVLQVPGRLFPIQVIYQPIPPEEQASRSEKMDPRPYLRILQGIDQRYPSEERGDL 367

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG++EIS+I  A Q                         VF  AP G+RKCI+STN
Sbjct: 368 LMFLSGMAEISTIQEACQ-------------------------VFDIAPAGVRKCIISTN 402

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TIDG+RFVVDSGKVKEMS+D  AKM  LQEFWIS+AS+EQRKGRAGRTGPGVCY
Sbjct: 403 IAETSVTIDGVRFVVDSGKVKEMSFDPKAKMQRLQEFWISRASSEQRKGRAGRTGPGVCY 462

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY+E  Y+  A Y  PEI RVS+DSL+L +  M LGD   F F++ PPA +I+++V  L
Sbjct: 463 RLYAESDYNAFAPYPVPEIHRVSLDSLILQMKSMDLGDPHSFVFIDPPPAASIQTAVTYL 522

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDI 634
            + GA+D +  +TS+G  L+ LPVD+
Sbjct: 523 KEQGALDRRAELTSIGSLLAQLPVDV 548



 Score =  146 bits (369), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 104/132 (78%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           + ++ L  +LDF Q++ F+ L K+R  Q +LP+ QY+ ++++ V    VV++AGDTGCGK
Sbjct: 118 DCRVALLHFLDFTQRQSFTKLAKLRRDQKNLPIFQYRNKMLELVRLHPVVVVAGDTGCGK 177

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  IACTQPRRIACISL+KRV++E+L+Q+ + VG+QIRFE  R   TK
Sbjct: 178 STQVPQYLLSAGFSHIACTQPRRIACISLAKRVSFESLNQFGSKVGHQIRFETTRTTATK 237

Query: 128 IVFITEGLLLRQ 139
           ++F+TEGLLLRQ
Sbjct: 238 LLFLTEGLLLRQ 249



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 168/345 (48%), Gaps = 58/345 (16%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEE 1089
            GA+D +  +TS+G  L+ LPVD+                   ++DL+ +         ++
Sbjct: 526  GALDRRAELTSIGSLLAQLPVDV-------------------VIDLSTS--------SKD 558

Query: 1090 EAGERLESMDANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKC 1149
            + G R E +   +   +LK D +Q +       +   VL LDE  +    G       + 
Sbjct: 559  DRGHRRERLTERKKLHQLKRDHEQQET------TKRKVLKLDEGQDEFSSGSDTEKTGRG 612

Query: 1150 LLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVTILKVILASGLYPQV 1209
                 A    + +   +  +L H       ++ +S S   S +   +LK++L  GLYPQ+
Sbjct: 613  RKDKQASGPSVDIQE-VKFKLRHDVSE--LQEAVSVSQDLSSRQQALLKLLLCRGLYPQM 669

Query: 1210 AIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLKLPGRN 1269
            A+ DE NTS    + +FH K+K  V +HP SVF + P+VL + E++  D      L    
Sbjct: 670  AMPDEHNTSRKDSDQVFHTKNKQGVVIHPTSVFATDPEVLLLPEEESRD------LESTK 723

Query: 1270 VISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSWIEVFV 1329
              SS+HQLL +++LLET++P+L NC+R+PALQTLLL +S I +N+D TRLV D WIE   
Sbjct: 724  RDSSRHQLLAFVTLLETNRPYLTNCVRVPALQTLLLVASCIDSNADCTRLVVDGWIE--- 780

Query: 1330 PLQEAKSTADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLK 1374
                         LE     + +Q +SSA  L     RLL A L+
Sbjct: 781  -------------LEMRNPEEALQVLSSALTLRADWERLLLAQLE 812



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 66/94 (70%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPGVCYRLY+E  Y+  A Y  PEI RVS+DSL+L +  M LGD   F F++ PPA +
Sbjct: 455 RTGPGVCYRLYAESDYNAFAPYPVPEIHRVSLDSLILQMKSMDLGDPHSFVFIDPPPAAS 514

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDI 902
           I+++V  L + GA+D +  +T++G  L+ LPVD+
Sbjct: 515 IQTAVTYLKEQGALDRRAELTSIGSLLAQLPVDV 548



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 48/62 (77%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D  L+ Y V+++DE+HERHLH DFLLGV++ L+    ++++ILMSATINI+LF  Y
Sbjct: 249  QIQQDRTLAQYQVVIVDEVHERHLHCDFLLGVLRTLVAERPDLRLILMSATINIQLFSDY 308

Query: 1175 FN 1176
            F+
Sbjct: 309  FS 310



 Score = 47.4 bits (111), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  D  L+ Y ++I+DEVHERHL+ DFLLGV+
Sbjct: 249 QIQQDRTLAQYQVVIVDEVHERHLHCDFLLGVL 281


>gi|402586296|gb|EJW80234.1| hypothetical protein WUBG_08856, partial [Wuchereria bancrofti]
          Length = 361

 Score =  355 bits (910), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 175/341 (51%), Positives = 248/341 (72%), Gaps = 9/341 (2%)

Query: 313 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR 372
            D  L+ Y+V++LDEIHER+L GDFLLG+++ L+    ++K+ILMSATIN++LF  YF +
Sbjct: 1   TDPELNQYNVIILDEIHERNLSGDFLLGLLRNLVRKRDDLKLILMSATINLQLFQNYF-K 59

Query: 373 IAKIIKVPGRLYPIQLEYHPIVELDR----TKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
              +IK+ GRLYPI+L Y PI E ++     K  K+DPGPYI IL +ID K    ERGDV
Sbjct: 60  DTPVIKIAGRLYPIELRYMPIKEHNQYESGKKKAKIDPGPYINILQMIDAKVDSNERGDV 119

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIF++G+SEIS++  A + Y E S+ WI+L LHSTLS EEQD+VF  AP G+RKCI+STN
Sbjct: 120 LIFLNGVSEISTVAEALKIYAETSKKWIILTLHSTLSTEEQDKVFDIAPLGIRKCILSTN 179

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           IAETS+TI+ IRFV+DSGKV  + +D    M +L+E+W S+ASA+QRKGRAGRTGPG+CY
Sbjct: 180 IAETSVTIEQIRFVIDSGKVNLVKFDSKTGMHSLREYWTSQASADQRKGRAGRTGPGICY 239

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAENIESSVRS 607
           RLYS++ +  +  ++  EI RVS++SL + +V M LG    +FPF+E P    +E +V S
Sbjct: 240 RLYSQQHFDKMEPFTVSEINRVSLESLAMQIVSMDLGISPLEFPFIERPNMGELEEAVES 299

Query: 608 LTQHGAIDS--KERVTSLGRFLSDLPVDIPLGKMLVFGSMF 646
           L + G +++   + +T LG+ ++++PV+IP+ K+L F  +F
Sbjct: 300 LWRQGILEAGNTKALTPLGKIIANIPVEIPVAKVL-FKCVF 339



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 73/109 (66%), Gaps = 4/109 (3%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAE 867
           RTGPG+CYRLYS++ +  +  ++  EI RVS++SL + +V M LG    +FPF+E P   
Sbjct: 232 RTGPGICYRLYSQQHFDKMEPFTVSEINRVSLESLAMQIVSMDLGISPLEFPFIERPNMG 291

Query: 868 NIESSVRSLTQHGAIDS--KERVTTLGRFLSDLPVDIPLGKMLVFGSMF 914
            +E +V SL + G +++   + +T LG+ ++++PV+IP+ K+L F  +F
Sbjct: 292 ELEEAVESLWRQGILEAGNTKALTPLGKIIANIPVEIPVAKVL-FKCVF 339



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 18/90 (20%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR 1177
             D  L+ Y+V++LDEIHER+L GDFLLG+++ L+    ++K+ILMSATIN++LF  YF  
Sbjct: 1    TDPELNQYNVIILDEIHERNLSGDFLLGLLRNLVRKRDDLKLILMSATINLQLFQNYF-- 58

Query: 1178 IAKDLLSGSTARSHKDVTILKVILASGLYP 1207
                          KD  ++K+  A  LYP
Sbjct: 59   --------------KDTPVIKI--AGRLYP 72



 Score = 44.3 bits (103), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 26/30 (86%)

Query: 230 TDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           TD  L+ Y+++ILDE+HER+L GDFLLG++
Sbjct: 1   TDPELNQYNVIILDEIHERNLSGDFLLGLL 30


>gi|384247241|gb|EIE20728.1| P-loop containing nucleoside triphosphate hydrolase protein,
           partial [Coccomyxa subellipsoidea C-169]
          Length = 799

 Score =  349 bits (895), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 197/468 (42%), Positives = 279/468 (59%), Gaps = 82/468 (17%)

Query: 328 IHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQ 387
           +HERHL+ D LL +++ LL    ++++ILMSATIN++ +  YF   A II+VPGRLYPI 
Sbjct: 112 VHERHLNTDILLALMRALLLQRPDLRVILMSATINVQAYSDYFGG-APIIQVPGRLYPIT 170

Query: 388 LEYHPIVELD--------------------RTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           ++Y      D                    R   E++DP PY+R+L  I++     ERGD
Sbjct: 171 VQYMAENSADARSQRRSNDEKRELASKGFKRRTIERIDPAPYLRLLQQIEQTVAGDERGD 230

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +L+F++G+ +IS++    +E+ ++S  W+VLPLHS LS++EQD+VF  APEG+RK I+ST
Sbjct: 231 LLVFLAGMEDISTVAEHIREHVQRSHRWLVLPLHSALSVDEQDKVFDIAPEGMRKVILST 290

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKAS---------------- 531
           NIAETS+TIDG+R V DSG+ KEM++D+++   +LQE WISKA                 
Sbjct: 291 NIAETSVTIDGVRIVADSGRAKEMTHDLSSGGGSLQEGWISKACALMTNFPSSYLTGDLQ 350

Query: 532 --------AEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 583
                   AEQRKGRAGRTGPG C+R+Y+E Q+     +  PEI+RV ++S++L +  + 
Sbjct: 351 QIPWHCAFAEQRKGRAGRTGPGQCFRMYTEAQFQAFPAFPAPEIQRVRLESVVLQIKMLA 410

Query: 584 LGDV------RKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLG 637
            GD       R+F F+E P  + +ES++ +L + GA+   E +T LG  LS LPVD+ +G
Sbjct: 411 -GDAGNSMDPRRFGFIEPPSKDALESAITALQKVGALTPAEVLTPLGSVLSCLPVDVHIG 469

Query: 638 KMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKE---LESNHGDPLTVLN 694
           KML+ G +FH  D VL++AA LSVQSPF  R   D D E  R+    LES HGDP T+L 
Sbjct: 470 KMLILGCVFHVTDPVLTIAAALSVQSPFL-RLPADSDAEGIRERRSLLESQHGDPFTLL- 527

Query: 695 AYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
                                     QR YE+ KLR+QF+ +L D GL
Sbjct: 528 -------------------------AQRLYEMAKLRAQFEGLLRDVGL 550



 Score =  119 bits (299), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 82/117 (70%), Gaps = 1/117 (0%)

Query: 5   LYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTG 64
           + E+ K  L  Y DF QK +   L K+ + + +LP+A ++  IID V     V++AGDTG
Sbjct: 1   VVEDHKAALPVYEDFYQKRQLQKLRKLLQDKAALPIAAFEAPIIDAVRAHPAVVVAGDTG 60

Query: 65  CGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKH 121
           CGKSTQ+PQ+L++AG+  +ACTQPRRI+ ISL +RVA+ETL ++ + + Y++  E+H
Sbjct: 61  CGKSTQLPQFLLKAGYCHVACTQPRRISAISLCRRVAFETLQEHRDDIAYRVH-ERH 116



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 9/136 (6%)

Query: 799 EEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDV--- 855
           E+ +G     RTGPG C+R+Y+E Q+     +  PEI+RV ++S++L +  +  GD    
Sbjct: 360 EQRKGR--AGRTGPGQCFRMYTEAQFQAFPAFPAPEIQRVRLESVVLQIKMLA-GDAGNS 416

Query: 856 ---RKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGS 912
              R+F F+E P  + +ES++ +L + GA+   E +T LG  LS LPVD+ +GKML+ G 
Sbjct: 417 MDPRRFGFIEPPSKDALESAITALQKVGALTPAEVLTPLGSVLSCLPVDVHIGKMLILGC 476

Query: 913 MFHQIDTMLLLDLALN 928
           +FH  D +L +  AL+
Sbjct: 477 VFHVTDPVLTIAAALS 492



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 24/134 (17%)

Query: 1193 DVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKD-KGFVSLHPFSVFTSQPDVLRI 1251
            DV +LK ILA+GLYPQVA+ D  N+    ++A F  +  +G  ++HP +V  +       
Sbjct: 614  DVNLLKAILAAGLYPQVAVPDPRNSQRRGQDAAFLTQHHRGEAAIHPGAVMCA------- 666

Query: 1252 SEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIH 1311
                  D  PG  L              Y+ LLET + +L N   +PAL  LLL +  I 
Sbjct: 667  ---SAADLDPGTAL-------------AYVELLETRRAYLSNLTPLPALPALLLLAERIG 710

Query: 1312 TNSDFTRLVFDSWI 1325
             ++  TR + D W+
Sbjct: 711  ADAAATRFLVDGWL 724



 Score = 48.1 bits (113), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+   E +T LG  LS LPVD+ +GKML+ G +FH  D +L +  AL+
Sbjct: 444  GALTPAEVLTPLGSVLSCLPVDVHIGKMLILGCVFHVTDPVLTIAAALS 492



 Score = 48.1 bits (113), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+   E +T LG  LS LPVD+ +GKML+ G +FH  D +L +  AL+
Sbjct: 444  GALTPAEVLTPLGSVLSCLPVDVHIGKMLILGCVFHVTDPVLTIAAALS 492


>gi|307183290|gb|EFN70159.1| Probable ATP-dependent RNA helicase DHX34 [Camponotus floridanus]
          Length = 1004

 Score =  336 bits (862), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 151/278 (54%), Positives = 217/278 (78%), Gaps = 10/278 (3%)

Query: 536 KGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEA 595
           K  +GRTGPGVCYR+YSEE Y +L +YSTPE++RV +DS LL ++ MGL D RKFPF+E 
Sbjct: 355 KQFSGRTGPGVCYRIYSEEDYKILEKYSTPELQRVPLDSSLLQMIAMGLPDARKFPFIEP 414

Query: 596 PPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           PPA ++E+++ SL  H A+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ VLSL
Sbjct: 415 PPANSLENAILSLKDHSALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSL 474

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR------- 708
           AA LS+Q+PFTNRA+RD +CET+RK LES+HGDP+T+LNA+KEWL VK++  +       
Sbjct: 475 AAALSIQTPFTNRAYRDAECETSRKRLESDHGDPITLLNAFKEWLEVKQENSQEYRGGSN 534

Query: 709 -SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKL 767
            S+KWC+RRG+EEQRFYE+ KLR+QFK++L D  L+  +P P++S++S ERA+RHGE+KL
Sbjct: 535 SSRKWCRRRGLEEQRFYEMIKLRTQFKELLQDCKLLKSLPEPNSSMTSAERAIRHGELKL 594

Query: 768 LQAIKRKKAEEAPKRRKMLKADNAYEIE-EEEEEEEGE 804
           L+++KR   +   ++RK LK +  ++I+ E+ ++E GE
Sbjct: 595 LKSLKRTYKQSESRKRKQLKVE-TFDIQLEDNDDENGE 631



 Score =  296 bits (759), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 211/662 (31%), Positives = 312/662 (47%), Gaps = 147/662 (22%)

Query: 804  ERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEA 863
            ++   RTGPGVCYR+YSEE Y +L +YSTPE++RV +DS LL ++ MGL D RKFPF+E 
Sbjct: 355  KQFSGRTGPGVCYRIYSEEDYKILEKYSTPELQRVPLDSSLLQMIAMGLPDARKFPFIEP 414

Query: 864  PPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            PPA ++E+++ SL  H A+   E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ +L L
Sbjct: 415  PPANSLENAILSLKDHSALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSL 474

Query: 924  DLALNFG------AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 977
              AL+        A    E  TS  R  SD    I L       +    ++         
Sbjct: 475  AAALSIQTPFTNRAYRDAECETSRKRLESDHGDPITL-----LNAFKEWLEVKQENSQEY 529

Query: 978  NFGAIDSKERVTSLG----RFLSDLPVDIPLGKMLVFGSMFHQI--DTMLLLDLALNFGA 1031
              G+  S++     G    RF           +M+   + F ++  D  LL  L     +
Sbjct: 530  RGGSNSSRKWCRRRGLEEQRFY----------EMIKLRTQFKELLQDCKLLKSLPEPNSS 579

Query: 1032 IDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEEA 1091
            + S ER    G        ++ L K L     + Q ++     L +       E+ ++E 
Sbjct: 580  MTSAERAIRHG--------ELKLLKSL--KRTYKQSESRKRKQLKVETFDIQLEDNDDEN 629

Query: 1092 GERLESMDANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL 1151
            GE    +D  ++EFR+K+D  QVQ                         + L     C  
Sbjct: 630  GE----LDIKDIEFRMKNDSSQVQ-------------------------NLLTASTACSY 660

Query: 1152 HSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVTILKVILASGLYPQVAI 1211
                 +K+IL S                                         LYPQ A 
Sbjct: 661  KDLTMLKLILCSG----------------------------------------LYPQFAC 680

Query: 1212 GDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVI 1271
             DE+N  +++ E LFH K K +V+LHP S F +   +L+I E DI+   PG K   ++ +
Sbjct: 681  ADEYNYCKSMSEQLFHTKAKPYVALHPMSFFGNHQQLLQIEEADIIS-IPGFK--SKSPV 737

Query: 1272 SSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPL 1331
            SSKHQ+L Y+SLLET+KP+LVN LRMPA QTLLLF+  I TN+ F+ +  DSW+ +  P+
Sbjct: 738  SSKHQILAYLSLLETTKPYLVNTLRMPAAQTLLLFAREIDTNNIFSLIACDSWLMLEFPV 797

Query: 1332 QEAKST------------------------------ADVNQLEHSLTRDLVQFMSSATHL 1361
             ++  T                               D +++E +LT++L+++M   T +
Sbjct: 798  PDSGQTLLMRATKLRNKWDFLLNQQLQGSDDANNEMKDFSKIEQNLTQELIEYMH--TTV 855

Query: 1362 AYSIRRLLAADLKTMYRRTGAESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVY------ 1415
             Y+I+RLL ADLK +Y   G        NPF A+F  V   T GGV +T  + Y      
Sbjct: 856  PYTIKRLLPADLKMIYVGNGNNDTCIEPNPFQADFKSVANITKGGVHITDNITYNCLKET 915

Query: 1416 DW 1417
            DW
Sbjct: 916  DW 917



 Score =  199 bits (505), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/127 (73%), Positives = 112/127 (88%)

Query: 16  YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL 75
           YLDFKQKEK S L K+R+TQ +LPVA+YK EII+TV KE+V+IIAGDTGCGKSTQ+P+YL
Sbjct: 152 YLDFKQKEKLSKLRKLRDTQANLPVARYKDEIIETVKKEKVIIIAGDTGCGKSTQVPRYL 211

Query: 76  VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
            +AGF++IACTQPRRIACISL+KRVA+ETLS+  + VGYQIRFEK + ++T I FITEGL
Sbjct: 212 YEAGFRKIACTQPRRIACISLAKRVAFETLSENLSRVGYQIRFEKQKNQETNITFITEGL 271

Query: 136 LLRQDSG 142
           LLRQ SG
Sbjct: 272 LLRQMSG 278



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 55/63 (87%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q++ +  LSSYDV+VLDE+HERHLHGDFLLG++KC+++   ++K++LMSATINIELF+ Y
Sbjct: 275  QMSGELALSSYDVIVLDEVHERHLHGDFLLGIMKCIIYQKPDLKLVLMSATINIELFNNY 334

Query: 1175 FNR 1177
            F +
Sbjct: 335  FAK 337



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 56/64 (87%), Gaps = 1/64 (1%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR-IAK 375
           LSSYDV+VLDE+HERHLHGDFLLG++KC+++   ++K++LMSATINIELF+ YF +   K
Sbjct: 282 LSSYDVIVLDEVHERHLHGDFLLGIMKCIIYQKPDLKLVLMSATINIELFNNYFAKEDVK 341

Query: 376 IIKV 379
           II+V
Sbjct: 342 IIEV 345



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 77/121 (63%), Gaps = 8/121 (6%)

Query: 137 LRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIE 196
           L QD  L+  +P P++S++S ERA+RHGE+KLL+++KR   +   ++RK LK +  ++I+
Sbjct: 563 LLQDCKLLKSLPEPNSSMTSAERAIRHGELKLLKSLKRTYKQSESRKRKQLKVE-TFDIQ 621

Query: 197 -EEEEEEEGERLESMDANEVEFRLKHDPKQVQ-VATDNFLSSY-DILILDEVHERHLYGD 253
            E+ ++E GE    +D  ++EFR+K+D  QVQ + T +   SY D+ +L  +    LY  
Sbjct: 622 LEDNDDENGE----LDIKDIEFRMKNDSSQVQNLLTASTACSYKDLTMLKLILCSGLYPQ 677

Query: 254 F 254
           F
Sbjct: 678 F 678



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 30/33 (90%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q++ +  LSSYD+++LDEVHERHL+GDFLLG++
Sbjct: 275 QMSGELALSSYDVIVLDEVHERHLHGDFLLGIM 307


>gi|390345696|ref|XP_784628.3| PREDICTED: probable ATP-dependent RNA helicase DHX34-like
           [Strongylocentrotus purpuratus]
          Length = 659

 Score =  322 bits (826), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 149/228 (65%), Positives = 190/228 (83%), Gaps = 2/228 (0%)

Query: 314 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
           D  LS Y VL+LDE+HERHLHGDFLLGV++C++    ++K++LMSATINI LF  YF + 
Sbjct: 331 DPVLSQYSVLILDEVHERHLHGDFLLGVLRCMMEQRDDLKLVLMSATININLFSNYF-KD 389

Query: 374 AKIIKVPGRLYPIQLEYHPIVELDR-TKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFM 432
           A +I+VPGRLYPIQ+EY PI E ++ +KSE+LD  PY+RI+  ID KYP +ERGD+L+F+
Sbjct: 390 APVIQVPGRLYPIQVEYVPIKESEQGSKSERLDARPYLRIMQRIDHKYPDSERGDLLVFL 449

Query: 433 SGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
           SG+SEISS+V AA+ Y  ++  WIVLPLHS+LS+ EQD+ F  +PEG+RKCIVSTNIAET
Sbjct: 450 SGVSEISSVVEAAKMYASQTNRWIVLPLHSSLSVAEQDKAFDISPEGVRKCIVSTNIAET 509

Query: 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540
           S+TIDG+RF+VDSGKVKEM+Y+  AKM  LQEFWIS+AS+EQRKGRAG
Sbjct: 510 SVTIDGVRFIVDSGKVKEMNYNSQAKMQQLQEFWISRASSEQRKGRAG 557



 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 107/132 (81%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E+K +L  YL F QK++F+ ++K+R+ Q +LP+A+Y++ I++ V K  VVI+AGDTGCGK
Sbjct: 196 EFKKVLLLYLGFNQKQQFNKVVKLRKDQCNLPIAKYRETIVEAVRKNSVVIVAGDTGCGK 255

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +A TQPRRIACISL+KRV YETL +Y + VGYQIRFE  + + TK
Sbjct: 256 STQVPQYLMSAGFDSVAVTQPRRIACISLAKRVGYETLHEYGSQVGYQIRFETTKTQATK 315

Query: 128 IVFITEGLLLRQ 139
           ++F+TEGLLLRQ
Sbjct: 316 LLFLTEGLLLRQ 327



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 48/62 (77%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  D  LS Y VL+LDE+HERHLHGDFLLGV++C++    ++K++LMSATINI LF  Y
Sbjct: 327  QLQLDPVLSQYSVLILDEVHERHLHGDFLLGVLRCMMEQRDDLKLVLMSATININLFSNY 386

Query: 1175 FN 1176
            F 
Sbjct: 387  FK 388



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 27/33 (81%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  D  LS Y +LILDEVHERHL+GDFLLGV+
Sbjct: 327 QLQLDPVLSQYSVLILDEVHERHLHGDFLLGVL 359


>gi|299470768|emb|CBN79814.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1594

 Score =  314 bits (804), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 156/340 (45%), Positives = 225/340 (66%), Gaps = 35/340 (10%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++A+D  LSSY V+++DE+HERH   DFLLG+++ +L    ++K++LMSATIN ELF  +
Sbjct: 470 QIASDPNLSSYSVVIVDEVHERHAGCDFLLGLLRAVLRRRPDLKVVLMSATINPELFSRF 529

Query: 370 FNRIAKIIKVPGRLYPIQLEYHP----------IVELDRTKSEKL--------------- 404
           F+  A +I+VPGR++P+++ Y P          + + D     KL               
Sbjct: 530 FD-GAPLIRVPGRMHPVEVRYVPTAADNDIQEVVSKHDGEGQRKLRSRGGGGGEGKRVMF 588

Query: 405 DPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKS--QGWIVLPLHS 462
           D  PY+++L  ID   PR ERGD+L+F+SG+S++ ++    +EY E    + W+VL LHS
Sbjct: 589 DARPYVKLLESIDTTTPRDERGDLLVFLSGMSDMLAVTEGVREYVEAKSPRRWVVLMLHS 648

Query: 463 TLSLEEQDR-------VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDV 515
           +LS+EEQD+       VF  +P G RK I++TNIAETS+TIDG+RFV DSGK KEMS+D 
Sbjct: 649 SLSVEEQDKARDFLGLVFDASPLGTRKMILATNIAETSVTIDGVRFVCDSGKAKEMSWDP 708

Query: 516 TAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSL 575
            + + +LQEFW+S+ASAEQRKGRAGRTGPGVC+RLY+   +  L  ++ PEIRR  ++ L
Sbjct: 709 ASGVRSLQEFWVSRASAEQRKGRAGRTGPGVCFRLYARSTFDRLPPFAEPEIRRCPLEGL 768

Query: 576 LLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
           +L +  +GL D R FP+L  PP EN+ +++ SL   GA D
Sbjct: 769 VLQMKSLGLDDPRYFPYLSPPPPENLRAALESLALLGATD 808



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/128 (50%), Positives = 97/128 (75%)

Query: 12  LLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQI 71
           +L+ ++DF+ +   + ++KIR  + SLP+A ++  I+  V     V++AGDTGCGKSTQ+
Sbjct: 343 VLQAFIDFRMRRSLAKVVKIRRDRASLPIAAFQNAIVRAVASNPCVLVAGDTGCGKSTQV 402

Query: 72  PQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFI 131
           PQYL+QAG+ R+ACTQPRRI+ + L +RV+YETL ++ + V YQ+RF+  RR  ++I+F+
Sbjct: 403 PQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHGSEVAYQVRFDSSRRRSSRILFL 462

Query: 132 TEGLLLRQ 139
           TEGLLLRQ
Sbjct: 463 TEGLLLRQ 470



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 85/125 (68%), Gaps = 1/125 (0%)

Query: 620  VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETAR 679
            +T LGR LS LPVD  +GKML  G++F + + VL+LAA LS Q+PF  RA          
Sbjct: 890  LTPLGRVLSALPVDPSVGKMLALGALFGESEHVLTLAAALSTQTPFDARAAAAASGANPV 949

Query: 680  KELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFKQVLG 738
             E  S+HGDP TV+NAY EW+ VK  R   S++WCKR G++EQR YE+TKLR QF+ +LG
Sbjct: 950  AEFASSHGDPFTVMNAYDEWIRVKAARKESSRRWCKRHGLQEQRLYEITKLRRQFEDLLG 1009

Query: 739  DSGLI 743
             +GLI
Sbjct: 1010 SAGLI 1014



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 49/76 (64%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPGVC+RLY+   +  L  ++ PEIRR  ++ L+L +  +GL D R FP+L  PP E
Sbjct: 733 GRTGPGVCFRLYARSTFDRLPPFAEPEIRRCPLEGLVLQMKSLGLDDPRYFPYLSPPPPE 792

Query: 868 NIESSVRSLTQHGAID 883
           N+ +++ SL   GA D
Sbjct: 793 NLRAALESLALLGATD 808



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 48/62 (77%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+A+D  LSSY V+++DE+HERH   DFLLG+++ +L    ++K++LMSATIN ELF  +
Sbjct: 470  QIASDPNLSSYSVVIVDEVHERHAGCDFLLGLLRAVLRRRPDLKVVLMSATINPELFSRF 529

Query: 1175 FN 1176
            F+
Sbjct: 530  FD 531



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)

Query: 1181 DLLSGSTAR--SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHP 1238
            D L+ S+ R  + +DV I+K IL  GLYPQ A+ D  N      E  +  +  G + + P
Sbjct: 1115 DQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSP 1174

Query: 1239 FSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQ-LLVYMSLLETSKPFLVNCLRM 1297
             SV   Q   +  +     +        G    + +   LL Y  L+ET +PF+ +   +
Sbjct: 1175 SSVLACQDFGIAATAGGTANGIHSSSSRGAAANAGRGDGLLCYGQLMETQRPFVSSVTPL 1234

Query: 1298 PALQTLLLFSSAIHTNSDFTRLVFDSWIEV 1327
            PALQ LLLFS+ + T+ D + ++FD W+ V
Sbjct: 1235 PALQALLLFSARVDTSEDASLILFDHWLLV 1264



 Score = 47.8 bits (112), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 27/33 (81%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+A+D  LSSY ++I+DEVHERH   DFLLG++
Sbjct: 470 QIASDPNLSSYSVVIVDEVHERHAGCDFLLGLL 502



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 1029 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            F    ++  +T LGR LS LPVD  +GKML  G++F + + +L L  AL+
Sbjct: 881  FDDATARAPLTPLGRVLSALPVDPSVGKMLALGALFGESEHVLTLAAALS 930



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 888 VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +T LGR LS LPVD  +GKML  G++F + + +L L  AL+
Sbjct: 890 LTPLGRVLSALPVDPSVGKMLALGALFGESEHVLTLAAALS 930


>gi|294932769|ref|XP_002780432.1| ATP-dependent RNA helicase protein, putative [Perkinsus marinus
           ATCC 50983]
 gi|239890366|gb|EER12227.1| ATP-dependent RNA helicase protein, putative [Perkinsus marinus
           ATCC 50983]
          Length = 1100

 Score =  310 bits (795), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 200/492 (40%), Positives = 278/492 (56%), Gaps = 45/492 (9%)

Query: 284 LDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIK 343
            D    RH     +L V + LL   +E  +D  LS ++VL+LDE+HERH   D +L  I 
Sbjct: 222 FDNTRTRHTR---ILFVTEGLLLRLLE--SDGELSDFNVLLLDEVHERHAPMDVILSYIP 276

Query: 344 CLLHSTAEVKIILMSATINIELFHTYFNRI-AKIIKVPGRLYPIQLE-----YHPIVELD 397
            LL    ++KIILMSAT + E F   FN   + +I V GR YP+  E       P++ L 
Sbjct: 277 ELLQKRNDLKIILMSATFDTEHFRDLFNLPESAVISVCGRSYPVTTEGRTWYVSPVLTLY 336

Query: 398 RTKSE-KLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWI 456
                   D  PY+ +L  I    P+++ GD L+F+SG  EI  +  A ++  E S+ WI
Sbjct: 337 WIHPHHSSDCSPYLALLKKIQTTTPKSQSGDALVFLSGAQEIECLCNAIRDEPEISRTWI 396

Query: 457 VLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVT 516
            LPLH+ L +EEQD+ F  AP G+RKC+++TN+AETSITIDGIRFV+DSGKVKEMS D  
Sbjct: 397 PLPLHAQLPVEEQDKAFDIAPRGMRKCVIATNVAETSITIDGIRFVIDSGKVKEMSVDAG 456

Query: 517 AKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLL 576
           +    L E WIS+ASA+QRKGRAGRTGPG CYR+YSE+    +  Y+ PEI R + DSL+
Sbjct: 457 SSTRRLAEQWISQASADQRKGRAGRTGPGQCYRMYSEKLGQHMLAYTRPEITR-NFDSLV 515

Query: 577 LSLVCMGLGDV----RKFPFLEAPPAENIESSVR------SLTQHGAIDSKE---RVTSL 623
            SL+ +   DV      F F    P +  E S+R       L +    DS      +TS 
Sbjct: 516 HSLLQLLALDVDVSGEDFRF----PTDIQEDSMRLARNYLCLARAATKDSNSTALHLTST 571

Query: 624 GRFLSDLPVDIPLGKML----VFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETAR 679
           GR LS LPV IP+G ML    + GS   ++ T+  +AA L+  SPF    +     E+A 
Sbjct: 572 GRVLSRLPVPIPVGNMLLMSMILGSTAMRVATI--IAASLNFHSPFRYGEYSGD--ESA- 626

Query: 680 KELESNHGDPLTVLNAYKEWLGVK-KDRVRSKKWCKRRGIEEQRFYEVTK----LRSQFK 734
            +L S+ GD  T  N Y  WL  + + R  +++W + RGI+E + Y+++K    L+ Q +
Sbjct: 627 -DLLSDSGDLFTCFNVYTAWLKRRVQSREGARRWARERGIDESKMYDMSKSAQQLQGQLR 685

Query: 735 QVLGDSGLITDI 746
           +  G     TD+
Sbjct: 686 EGRGGRAAATDM 697



 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 88/142 (61%), Gaps = 16/142 (11%)

Query: 13  LRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           LR Y D + K+    L  +  ++ +LP+A+++++I+  +   R+V+IAGDTGCGKSTQ+P
Sbjct: 101 LRFYTDMRLKQSNQKLRSLMSSRTALPIAKHREQILAALESSRIVLIAGDTGCGKSTQVP 160

Query: 73  QYLVQAGF-QRIAC---------------TQPRRIACISLSKRVAYETLSQYSNLVGYQI 116
           QYL++A     I C               TQPRR+A +SL +RV  E L  + + V YQ+
Sbjct: 161 QYLLEADRDSSIICEHAESPHKLSDGLSGTQPRRLAAMSLCRRVQTEQLQAWGSRVAYQM 220

Query: 117 RFEKHRREKTKIVFITEGLLLR 138
           RF+  R   T+I+F+TEGLLLR
Sbjct: 221 RFDNTRTRHTRILFVTEGLLLR 242



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 71/138 (51%), Gaps = 24/138 (17%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDV----RKFPFLEAP 864
           RTGPG CYR+YSE+    +  Y+ PEI R + DSL+ SL+ +   DV      F F    
Sbjct: 481 RTGPGQCYRMYSEKLGQHMLAYTRPEITR-NFDSLVHSLLQLLALDVDVSGEDFRF---- 535

Query: 865 PAENIESSVR------SLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKML----VFG 911
           P +  E S+R       L +    DS      +T+ GR LS LPV IP+G ML    + G
Sbjct: 536 PTDIQEDSMRLARNYLCLARAATKDSNSTALHLTSTGRVLSRLPVPIPVGNMLLMSMILG 595

Query: 912 SMFHQIDTMLLLDLALNF 929
           S   ++ T++    +LNF
Sbjct: 596 STAMRVATIIA--ASLNF 611



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)

Query: 1187 TARSHKDVTILKVILASGLYPQVAIGDEFNTSE-TVKEALF-----HCKDKGFVSLHPFS 1240
            T  S   + +L + +   LYP ++   + N +E T K+ LF     +     F S+HP S
Sbjct: 745  TRNSFTGMKLLSMCIGKALYPNISYPAKSNRTEGTAKDCLFTVLAGNLAADRFASIHPQS 804

Query: 1241 VFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPAL 1300
            V                        P  N IS + + + + SLL T +PF+V+C+R+P L
Sbjct: 805  VL----------------------YPIANEISPETECVGFSSLLLTYRPFIVHCIRLPLL 842

Query: 1301 QTLLLFSSAIHTNSDFTRLVFD 1322
             TLL  ++ ++TN+    LV D
Sbjct: 843  STLLFAAANVNTNTQCDSLVID 864



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 38/59 (64%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            +D  LS ++VL+LDE+HERH   D +L  I  LL    ++KIILMSAT + E F   FN
Sbjct: 246  SDGELSDFNVLLLDEVHERHAPMDVILSYIPELLQKRNDLKIILMSATFDTEHFRDLFN 304


>gi|300122720|emb|CBK23286.2| unnamed protein product [Blastocystis hominis]
          Length = 511

 Score =  286 bits (732), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 157/398 (39%), Positives = 233/398 (58%), Gaps = 42/398 (10%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++ +D     Y ++++DE+HERH+  D LLG+IK +     E ++++MSAT++ + F  +
Sbjct: 108 QIQSDPLFQQYSMVIMDEVHERHITTDVLLGMIKLIALKRPEFRVVIMSATMDPQQFIEF 167

Query: 370 FNR---------IAKIIKVPGRLYPIQLEYHPIVELDRTK---------------SEKLD 405
           F +            +I+VPGR YP+ + Y P+ E+   +               +E+LD
Sbjct: 168 FQKPVEGVANQLSVNVIQVPGRTYPVTIHYCPLEEIGVKRRRGPREERESGLYFGTEELD 227

Query: 406 PGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLS 465
           P PY+RIL  ID+     ERGDVLIF+SG+ EI++I+ A  +Y   S  W++L LHSTL 
Sbjct: 228 PAPYLRILKEIDQNMDVNERGDVLIFVSGLKEINTIINAFGDYATSSGRWVLLRLHSTLQ 287

Query: 466 LEEQDRVFHYAP----------EGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDV 515
             EQ  +F+  P          +G+RKCIVSTNIAETS+TI  +R+V+DSGK KE++   
Sbjct: 288 SSEQQLIFNPTPPVAFHSFIESQGVRKCIVSTNIAETSVTIPNVRYVIDSGKSKELAEPS 347

Query: 516 TAKMSTLQ--EFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSID 573
               ST+Q  E++IS++SA QR GRAGRTGPGVCYRLYSEE Y  + EYS PEI R ++D
Sbjct: 348 LNAGSTVQLHEYFISRSSARQRAGRAGRTGPGVCYRLYSEEDYYEMMEYSIPEILRGNLD 407

Query: 574 S------LLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFL 627
                  LL +L  + +  + +FP L+ P +  I  + + L  +GA++    +TSLG  L
Sbjct: 408 DTVLLIHLLHALKILSVASIAEFPLLDCPSSLTIRHAEKRLENYGALNHAHEITSLGVLL 467

Query: 628 SDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
           S LP+ +  G  LV  +   Q    + + + LS Q  F
Sbjct: 468 SSLPLPVSQGYFLVMAAFLGQPYLGVVVCSTLSFQVFF 505



 Score =  115 bits (287), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 77/108 (71%), Gaps = 2/108 (1%)

Query: 32  RETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRI 91
           R+ QN LP+ + K  I+ +V    V +I GDTGCGKSTQ+PQYL+ AG+  I CTQPRR+
Sbjct: 3   RDKQN-LPIFREKDAILSSVKNNIVTVIIGDTGCGKSTQVPQYLISAGWNHIVCTQPRRL 61

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           + ISLS+RV+ E   + +  +GYQIRFE   R  TK+ F+TEG+L++Q
Sbjct: 62  STISLSERVSKEMYCEETGDIGYQIRFESSGR-GTKLKFVTEGVLIKQ 108



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 6/114 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDS------LLLSLVCMGLGDVRKFPFLE 862
           RTGPGVCYRLYSEE Y  + EYS PEI R ++D       LL +L  + +  + +FP L+
Sbjct: 375 RTGPGVCYRLYSEEDYYEMMEYSIPEILRGNLDDTVLLIHLLHALKILSVASIAEFPLLD 434

Query: 863 APPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQ 916
            P +  I  + + L  +GA++    +T+LG  LS LP+ +  G  LV  +   Q
Sbjct: 435 CPSSLTIRHAEKRLENYGALNHAHEITSLGVLLSSLPLPVSQGYFLVMAAFLGQ 488



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 41/63 (65%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+ +D     Y ++++DE+HERH+  D LLG+IK +     E ++++MSAT++ + F  +
Sbjct: 108  QIQSDPLFQQYSMVIMDEVHERHITTDVLLGMIKLIALKRPEFRVVIMSATMDPQQFIEF 167

Query: 1175 FNR 1177
            F +
Sbjct: 168  FQK 170


>gi|354493795|ref|XP_003509025.1| PREDICTED: probable ATP-dependent RNA helicase DHX34 [Cricetulus
           griseus]
          Length = 883

 Score =  285 bits (729), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 141/226 (62%), Positives = 179/226 (79%), Gaps = 3/226 (1%)

Query: 323 LVLDEIH-ERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPG 381
           L+L +I  E  L  DFLLGV++ LL    ++K+ILMSATINI LF +YF++ A +++VPG
Sbjct: 158 LLLRQIQREPPLPNDFLLGVLRRLLPRRPDLKVILMSATINISLFSSYFSQ-APVVQVPG 216

Query: 382 RLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISS 440
           RL+ I + Y P   E   +KSE+LDP P++R+L  ID KYP  ERGD+L+F+SG++EIS+
Sbjct: 217 RLFHITVVYQPQEAEQTASKSERLDPRPFLRVLEAIDNKYPPEERGDLLVFLSGMAEIST 276

Query: 441 IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR 500
           ++ AAQ Y   +Q W+VLPLHS LS+ +QD+VF  AP G+RKCI+STNIAETS+TIDGIR
Sbjct: 277 VLDAAQAYASLTQRWVVLPLHSALSVADQDKVFDVAPAGVRKCILSTNIAETSVTIDGIR 336

Query: 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           FVVDSGKVKEMSYD  AK+  LQEFWIS+ASAEQRKGRAGRTGPGV
Sbjct: 337 FVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGV 382



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/57 (73%), Positives = 48/57 (84%)

Query: 83  IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TKIVF+T GLLLRQ
Sbjct: 106 VACTQPRRIACISLAKRVGFESLSQYGSRVGYQIRFESTRSAATKIVFLTVGLLLRQ 162



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 14/174 (8%)

Query: 582 MGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGK--- 638
           M +GD R FPF+E PP  ++E+++  L   GA+DS E +T +G  L+ LPVD+ +G+   
Sbjct: 500 MSVGDPRTFPFIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGEPQP 559

Query: 639 MLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKE 698
           +  F     +I      A    +      R  +       R        + LT L+  + 
Sbjct: 560 VSPFPLNLLRIGEEAGSAGGADMCPRVWKRCQQASPGARPRAPHHLLRWESLTHLHLGEN 619

Query: 699 WLGVKKDR-----VRSKK------WCKRRGIEEQRFYEVTKLRSQFKQVLGDSG 741
               ++ R     V+S++      WC+RRG+EE R YE+  LR QFK++L D G
Sbjct: 620 RHVQQQSRGCEAQVKSERSRNSRKWCRRRGVEEHRLYEMANLRRQFKELLEDHG 673



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 850 MGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGK 906
           M +GD R FPF+E PP  ++E+++  L   GA+DS E +T +G  L+ LPVD+ +G+
Sbjct: 500 MSVGDPRTFPFIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGE 556



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 31/34 (91%)

Query: 1268 RNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQ 1301
            ++ +S KHQLL ++SLLET+KP+LVNC+R+PALQ
Sbjct: 698  KDQMSCKHQLLAFVSLLETNKPYLVNCVRIPALQ 731



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 1/51 (1%)

Query: 1128 LVLDEIH-ERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR 1177
            L+L +I  E  L  DFLLGV++ LL    ++K+ILMSATINI LF +YF++
Sbjct: 158  LLLRQIQREPPLPNDFLLGVLRRLLPRRPDLKVILMSATINISLFSSYFSQ 208


>gi|302909139|ref|XP_003050007.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256730944|gb|EEU44294.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1349

 Score =  278 bits (710), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 173/495 (34%), Positives = 280/495 (56%), Gaps = 44/495 (8%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-KIILMSATINIELFHT 368
            +VAA   L+    +V+DE+HER L  DFLL +I+ ++ +  ++ K+ILMSAT++   F  
Sbjct: 699  DVAAS--LADVSHVVIDEVHERSLDTDFLLNLIRDVMKAKKDMLKLILMSATLDAATFKN 756

Query: 369  YFNRIA---KIIKVPGRLYPIQLEY-HPIVELDRTKSEKLDPGPYI---RILSIIDKKYP 421
            YF        ++++ GR +P+   Y   ++ +    ++K D  P+I    +  +I K   
Sbjct: 757  YFASEGLNVGMVEIEGRTFPVDEFYLDDVIRMTGYGTDKSD-DPFIGDEAMGKVIQKLGS 815

Query: 422  R--------------------TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLH 461
            R                     + G +LIF+ G+ EI+   RA +  +       VLPLH
Sbjct: 816  RINYGLLVDAVKAIDYELSYEKKTGGILIFLPGVGEINQSCRALKAISSLH----VLPLH 871

Query: 462  STLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMST 521
            ++L   EQ RVF  AP G RK +V+TN+AETSITID I  V+DSGKVKE S+DV   M  
Sbjct: 872  ASLETREQKRVFTNAPHGKRKVVVATNVAETSITIDDIVVVIDSGKVKETSFDVQNNMRK 931

Query: 522  LQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVC 581
            L+E W S+A+ +QR+GRAGR   G CY+L++++    + E   PEIRRV ++ L LS+  
Sbjct: 932  LEETWASRAACKQRRGRAGRVQEGQCYKLFTQKLEQQMPERPEPEIRRVPLEQLCLSVRA 991

Query: 582  MGLGDVRKFPFLEAPP--AENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKM 639
            MG+ DV  F      P  A  I+ ++R L + GA+D  E +T++G+ L+ LP D+  GK+
Sbjct: 992  MGMRDVAGFLGRSPTPPDATAIDGAMRLLQRMGALDGDE-LTAMGQQLAMLPADLRCGKL 1050

Query: 640  LVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW 699
            +VFG++F  +D  +++AA+LS +SPF +   R  + + AR    S  GD LT L+A++EW
Sbjct: 1051 MVFGAIFGCLDDCVTIAAILSTRSPFVSPQERRDEAKEARMIFYSGDGDLLTDLHAFQEW 1110

Query: 700  LGVKKDRVRS---KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSR 756
              + +DR+     + WC+   +  Q   +++  ++Q+   LG+ G+   +P  +A+  + 
Sbjct: 1111 DAMMQDRIPQRHVRSWCEEHFLNFQTLSDISNTKAQYYTALGEIGI---VPPSEATSEAH 1167

Query: 757  ERALRHGEIKLLQAI 771
             R +     +LL+A+
Sbjct: 1168 GRGVGSDSPQLLRAL 1182



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 10/158 (6%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           +W    R    + ++++ S+   +   +  LP  + ++ II TV    V II+G+TG GK
Sbjct: 551 KWVKDERNREQWLRRQESSSWKDMLSKRQRLPAWKMREAIIGTVKSNHVTIISGETGSGK 610

Query: 68  STQIPQYLVQ-------AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           STQ  Q+++         G   +  TQPRRI+ + L+ RVA E  S+  + +GY IR E 
Sbjct: 611 STQSMQFVLDDLYANGLGGCANMIVTQPRRISALGLADRVAEERCSRVGDEIGYAIRGES 670

Query: 121 HRREKTKIVFITEGLLLRQ---DSGLITDIPGPDASLS 155
            R + T+I F+T G+LLR+     G + D+    A +S
Sbjct: 671 RRSKDTRITFVTTGVLLRRLQTSGGRVEDVAASLADVS 708



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 3/113 (2%)

Query: 808  SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP-- 865
             R   G CY+L++++    + E   PEIRRV ++ L LS+  MG+ DV  F      P  
Sbjct: 950  GRVQEGQCYKLFTQKLEQQMPERPEPEIRRVPLEQLCLSVRAMGMRDVAGFLGRSPTPPD 1009

Query: 866  AENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQID 918
            A  I+ ++R L + GA+D  E +T +G+ L+ LP D+  GK++VFG++F  +D
Sbjct: 1010 ATAIDGAMRLLQRMGALDGDE-LTAMGQQLAMLPADLRCGKLMVFGAIFGCLD 1061



 Score = 48.1 bits (113), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 1128 LVLDEIHERHLHGDFLLGVIKCLLHSTAEV-KIILMSATINIELFHTYF 1175
            +V+DE+HER L  DFLL +I+ ++ +  ++ K+ILMSAT++   F  YF
Sbjct: 710  VVIDEVHERSLDTDFLLNLIRDVMKAKKDMLKLILMSATLDAATFKNYF 758


>gi|40788875|dbj|BAA09483.2| KIAA0134 [Homo sapiens]
          Length = 587

 Score =  276 bits (707), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 129/206 (62%), Positives = 159/206 (77%)

Query: 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKAS 531
           VF  AP G+RKCI+STNIAETS+TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+AS
Sbjct: 351 VFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQAS 410

Query: 532 AEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFP 591
           AEQRKGRAGRTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FP
Sbjct: 411 AEQRKGRAGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFP 470

Query: 592 FLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDT 651
           F+E PP  ++E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ 
Sbjct: 471 FIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEP 530

Query: 652 VLSLAAVLSVQSPFTNRAFRDPDCET 677
           VL++AA LSVQSPFT  A   P+C T
Sbjct: 531 VLTIAAALSVQSPFTRSAQSSPECCT 556



 Score =  173 bits (439), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 102/132 (77%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++AGDTGCGK
Sbjct: 143 EFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGK 202

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TK
Sbjct: 203 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 262

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 263 IVFLTVGLLLRQ 274



 Score =  133 bits (335), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 1/137 (0%)

Query: 792 YEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 851
           + I +   E+   R   RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M 
Sbjct: 404 FWISQASAEQRKGR-AGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMS 462

Query: 852 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
           +GD R FPF+E PP  ++E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ G
Sbjct: 463 VGDPRTFPFIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILG 522

Query: 912 SMFHQIDTMLLLDLALN 928
           SMF  ++ +L +  AL+
Sbjct: 523 SMFSLVEPVLTIAAALS 539



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 61/77 (79%), Gaps = 1/77 (1%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  +  L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 274 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSY 333

Query: 370 FNRIAKIIKVPGRLYPI 386
           F+  A +++VPGRL+PI
Sbjct: 334 FSN-APVVQVPGRLFPI 349



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 49/62 (79%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 274  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSY 333

Query: 1175 FN 1176
            F+
Sbjct: 334  FS 335



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 491  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 539



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 491  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 539



 Score = 47.0 bits (110), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 274 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 306


>gi|255086581|ref|XP_002509257.1| predicted protein [Micromonas sp. RCC299]
 gi|226524535|gb|ACO70515.1| predicted protein [Micromonas sp. RCC299]
          Length = 809

 Score =  275 bits (703), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 167/491 (34%), Positives = 275/491 (56%), Gaps = 58/491 (11%)

Query: 313 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR 372
           +D  L     +++DE+HER L  DFLL +++ L     + +++ MSAT+N ELF  YF R
Sbjct: 107 SDPDLRGVSHVIVDEVHERDLLSDFLLVILRRLAARREDFRLVAMSATVNAELFKGYFER 166

Query: 373 I----AKIIKVPGRLYPI---QLE---------------------------------YHP 392
           +       +++PGR +P+   +LE                                 ++P
Sbjct: 167 VVPGECGCVEIPGRTFPVAEYRLEDAIEATGYVCEPDSEFALGADGKPQGGGGGGRTFNP 226

Query: 393 IVELDRTKS---------EKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSI-V 442
           +      +S         EK++      ++ +I  +Y   E G +LIF+ G++EI  +  
Sbjct: 227 LSGGGARRSKAMAATVDEEKINMELIEMLVQLIADEY---EDGAILIFLPGMAEIRGLHE 283

Query: 443 RAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFV 502
           R A   ++  + +I++PLHSTLS EEQ   F     G+RK +++TNIAETSITID + FV
Sbjct: 284 RLASSLDDVEKRFILIPLHSTLSSEEQRLTFSKPLPGVRKVVMATNIAETSITIDDVVFV 343

Query: 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEY 562
           +DSG+V+E  YD T++MS+L   W S+AS+ QR+GRAGR   G C+ LYS  + S LA++
Sbjct: 344 IDSGRVRETQYDPTSRMSSLVTAWCSRASSRQRRGRAGRVREGYCFHLYSSARESKLADF 403

Query: 563 STPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPAENIESSVRSLTQHGAIDSKERV 620
           +TPEI R  +D+L L +  + LGDVR+F    +E PP   I S++RSL +  AID+ + +
Sbjct: 404 TTPEILRTPLDALCLQIKILRLGDVREFLAQAIEPPPEGAIASALRSLAELDAIDASDEL 463

Query: 621 TSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARK 680
           T LG  L++LPVD  LGKM+++G+MF  +D VL++AA +  +SPF +   +  + + A++
Sbjct: 464 TPLGHHLAELPVDARLGKMMLYGAMFSCLDPVLTIAAGVGFRSPFVSPMDKRDEADEAKR 523

Query: 681 ELESNHG--DPLTVLNAYKEWLGVK-KDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVL 737
           ++       D LT++ AY  W+  K + R   + +  +  +  Q   +++++R Q+ ++L
Sbjct: 524 KIAGAGATSDHLTLVRAYAGWIRAKARGRGFERDFLAKTFLSAQTLRQISEMRQQYVELL 583

Query: 738 GDSGLITDIPG 748
              G +    G
Sbjct: 584 DQIGFLRSGTG 594



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 79/124 (63%), Gaps = 2/124 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPP 865
            R   G C+ LYS  + S LA+++TPEI R  +D+L L +  + LGDVR+F    +E PP
Sbjct: 381 GRVREGYCFHLYSSARESKLADFTTPEILRTPLDALCLQIKILRLGDVREFLAQAIEPPP 440

Query: 866 AENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
              I S++RSL +  AID+ + +T LG  L++LPVD  LGKM+++G+MF  +D +L +  
Sbjct: 441 EGAIASALRSLAELDAIDASDELTPLGHHLAELPVDARLGKMMLYGAMFSCLDPVLTIAA 500

Query: 926 ALNF 929
            + F
Sbjct: 501 GVGF 504



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 65/103 (63%), Gaps = 7/103 (6%)

Query: 44  KQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ-------AGFQRIACTQPRRIACISL 96
           ++E+++ +   R  +++G TGCGK+TQ+PQY+ +        G   +  TQPRR++ I++
Sbjct: 2   RREVLECIENGRASVVSGATGCGKTTQVPQYVFENAVRAGRGGECSVIITQPRRLSAIAV 61

Query: 97  SKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           ++RVA E   +  + VGY IR E  +   T+++F T G+LLR+
Sbjct: 62  AERVAQERCERIGDTVGYSIRLESRQSSNTRLLFCTTGILLRR 104



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 9/73 (12%)

Query: 1106 RLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 1165
            RL+ DP          L     +++DE+HER L  DFLL +++ L     + +++ MSAT
Sbjct: 104  RLQSDPD---------LRGVSHVIVDEVHERDLLSDFLLVILRRLAARREDFRLVAMSAT 154

Query: 1166 INIELFHTYFNRI 1178
            +N ELF  YF R+
Sbjct: 155  VNAELFKGYFERV 167



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNF 1029
            AID+ + +T LG  L++LPVD  LGKM+++G+MF  +D +L +   + F
Sbjct: 456  AIDASDELTPLGHHLAELPVDARLGKMMLYGAMFSCLDPVLTIAAGVGF 504



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNF 1079
            AID+ + +T LG  L++LPVD  LGKM+++G+MF  +D +L +   + F
Sbjct: 456  AIDASDELTPLGHHLAELPVDARLGKMMLYGAMFSCLDPVLTIAAGVGF 504


>gi|307174476|gb|EFN64954.1| Probable ATP-dependent RNA helicase DHX34 [Camponotus floridanus]
          Length = 392

 Score =  275 bits (703), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 157/189 (83%), Gaps = 3/189 (1%)

Query: 379 VPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE 437
           VPGRLYPIQL Y P+ VE  R K+++ +P PY++I+ IID+KYP  E+GD+LIF+SGISE
Sbjct: 1   VPGRLYPIQLFYRPVTVEDIRYKNDRFNPSPYVQIMQIIDQKYPANEKGDLLIFLSGISE 60

Query: 438 ISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497
           I+++V AA+EY+ K   WIVLPLHSTLS+ EQD+VF YAPEG+RKCIV+TNIAETSITID
Sbjct: 61  ITAVVDAAKEYSTKKNNWIVLPLHSTLSIIEQDKVFDYAPEGVRKCIVATNIAETSITID 120

Query: 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557
           GIRFV DSGKVKEMSYD + KM  L+EFWISKASAEQRKGR+GRTGPGVCYR+  +    
Sbjct: 121 GIRFVADSGKVKEMSYDPSCKMQRLKEFWISKASAEQRKGRSGRTGPGVCYRIACDSW-- 178

Query: 558 LLAEYSTPE 566
           L+ E+  P+
Sbjct: 179 LMLEFPVPD 187



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1339 DVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGSNPFVAEFPM 1398
            D +++E +LT++L+++M   T + Y+I+RLL ADLK +Y   G        NPF A+F  
Sbjct: 223  DFSKIEQNLTQELIEYMH--TTVPYTIKRLLPADLKMIYVGNGNNDTCIEPNPFQADFKS 280

Query: 1399 VVEETLGGVRVTPYLVYD 1416
            V   T GGV +T  + Y+
Sbjct: 281  VANITKGGVHITDNITYN 298


>gi|148826316|ref|YP_001291069.1| ATP-dependent RNA helicase HrpA [Haemophilus influenzae PittEE]
 gi|229846101|ref|ZP_04466213.1| ATP-dependent RNA helicase HrpA [Haemophilus influenzae 7P49H1]
 gi|148716476|gb|ABQ98686.1| ATP-dependent helicase [Haemophilus influenzae PittEE]
 gi|229811105|gb|EEP46822.1| ATP-dependent RNA helicase HrpA [Haemophilus influenzae 7P49H1]
          Length = 1304

 Score =  273 bits (699), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 171/493 (34%), Positives = 270/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTK--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLL 472

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K  +T +GR L+ LPVD+ L KM++    F  +  ++ + + LS+
Sbjct: 473 EELGAFETVQTKSGEKRLLTRVGRQLAQLPVDLRLAKMILSAVNFGCVYEMMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +  D +   +       D L  LN ++     +K+  ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQDSDEKHRRFADKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 80/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  V+ L + GA ++       K  +T +GR L+ LPVD+ L KM++    F  +  M+
Sbjct: 465 IQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDLRLAKMILSAVNFGCVYEMM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|315634550|ref|ZP_07889835.1| ATP-dependent helicase HrpA [Aggregatibacter segnis ATCC 33393]
 gi|315476777|gb|EFU67524.1| ATP-dependent helicase HrpA [Aggregatibacter segnis ATCC 33393]
          Length = 1304

 Score =  273 bits (698), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 173/493 (35%), Positives = 268/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRPDLKVIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+ E D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVAEDD-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R S+ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEEDFNNRPEFTDPEILRTSLASVILQMTALGLDDIEVFPFVDAPDKRHIQDGVKLL 472

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K R+T++GR L+ LPVD  L KML+    F  +  V+ + + LS+
Sbjct: 473 EELGAFETVQTKSGEKRRLTTIGRQLAQLPVDPRLAKMLLSAVDFGSVYEVMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN +      +K+  ++  ++ C++  + 
Sbjct: 533 QDPRERPTEKQQASDEKHRRFADKKSDFLAFLNLWHYVQEQQKELTKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYQQIRLAVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 82/138 (59%), Gaps = 9/138 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R S+ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNNRPEFTDPEILRTSLASVILQMTALGLDDIEVFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  V+ L + GA ++       K R+TT+GR L+ LPVD  L KML+    F  +  ++
Sbjct: 465 IQDGVKLLEELGAFETVQTKSGEKRRLTTIGRQLAQLPVDPRLAKMLLSAVDFGSVYEVM 524

Query: 922 LLDLALNFGAIDSKERVT 939
           ++  AL+    D +ER T
Sbjct: 525 IIVSALSIQ--DPRERPT 540



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKAEIEKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGTIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  +LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELQTELGDLVGYKVRFNDQISDNTQIKLMTDGILL 185



 Score = 67.0 bits (162), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRPDLKVIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|407692055|ref|YP_006816844.1| ATP-dependent RNA helicase HrpA [Actinobacillus suis H91-0380]
 gi|407388112|gb|AFU18605.1| ATP-dependent RNA helicase HrpA [Actinobacillus suis H91-0380]
          Length = 1299

 Score =  273 bits (698), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 154/436 (35%), Positives = 249/436 (57%), Gaps = 16/436 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR +P+++ Y PIVE D       D      IL+ +D+      RGD+
Sbjct: 249 HFNN-APIIEVSGRTFPVEVRYRPIVEED-------DQDQLQGILNAVDELQAEG-RGDI 299

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFMSG  EI     A Q+  ++ +   +LPL++ LS  EQ R+F   P GL + I++TN
Sbjct: 300 LIFMSGEREIRDTAEALQK--QELRFTEILPLYARLSAAEQQRIFQ--PSGLNRVILATN 355

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C 
Sbjct: 356 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTSEGICI 415

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    ++  +R L
Sbjct: 416 RLYSEEDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQVQDGIRLL 475

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GAI+   ++T++GR L+ LP+D  LG+M++  +    +  V+ + + LS+Q P    
Sbjct: 476 EELGAINGN-KLTAIGRQLAQLPIDPRLGRMVIAAAQNGSLHEVMMIVSALSIQDPRERP 534

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEV 726
             R    +   +       D L  +N +      +K+  ++  +K C++  +   R  E 
Sbjct: 535 QERQQAADEKHRRFADKDSDFLAFVNLWHYIQTQQKELTKNQLRKQCQKDFLNYLRVREW 594

Query: 727 TKLRSQFKQVLGDSGL 742
             +  Q +  + + GL
Sbjct: 595 QDIYHQLRLSVREMGL 610



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 79/129 (61%), Gaps = 3/129 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    
Sbjct: 408 RTSEGICIRLYSEEDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQ 467

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           ++  +R L + GAI+   ++T +GR L+ LP+D  LG+M++  +    +  ++++  AL+
Sbjct: 468 VQDGIRLLEELGAINGN-KLTAIGRQLAQLPIDPRLGRMVIAAAQNGSLHEVMMIVSALS 526

Query: 929 FGAIDSKER 937
               D +ER
Sbjct: 527 IQ--DPRER 533



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRR 90
           T   LPV+  ++EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRR
Sbjct: 82  TYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRR 141

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  S++ R+A E  S+    VGY++RF     E T +  +T+G+LL
Sbjct: 142 LAARSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILL 188



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 249  HFNNAPIIEVSGRT 262



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++  D +L+ YD LI+DE HER L  DF+LG +   LH
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILH 227


>gi|389774994|ref|ZP_10193080.1| ATP-dependent RNA helicase [Rhodanobacter spathiphylli B39]
 gi|388437659|gb|EIL94441.1| ATP-dependent RNA helicase [Rhodanobacter spathiphylli B39]
          Length = 1345

 Score =  273 bits (698), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 248/437 (56%), Gaps = 15/437 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D +LS+YD L++DE HER L+ DFLLG +K L     E+KII+ SATI+   F  
Sbjct: 188 AETQGDPWLSAYDTLIIDEAHERSLNIDFLLGYLKRLAIRRPELKIIVTSATIDTARFAE 247

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A +++V GR YP++  + P+  +    ++ +  G    I +++D+      RGDV
Sbjct: 248 HFGG-APVVEVEGRAYPVETRWRPVEAV----AKNMQQGSAEHIAAVLDEISHDDPRGDV 302

Query: 429 LIFMSGISEISSI--VRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           L+F+ G  EI  +  + + ++Y E      +LPL++ LS  +QDRVF   P   R+ +++
Sbjct: 303 LVFLPGEREIRDVHQLLSRRQYRETE----ILPLYARLSAGDQDRVFK--PGVKRRVVLA 356

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+  IR+V+D+G  +   Y   +++  L    +S+A+A+QRKGR GR GPG+
Sbjct: 357 TNVAETSLTVPRIRYVIDTGTARVKRYSQRSQLERLHVEPVSQAAADQRKGRCGRVGPGI 416

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           CYRLY E  ++  A ++ PE+ R S+ +++L ++ + LG+V  FPFLEAP    I    R
Sbjct: 417 CYRLYDEADFAGRAAFTDPELLRSSLANVILRMLALKLGEVDDFPFLEAPDPRVIADGFR 476

Query: 607 SLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFT 666
            LT+  AID   ++T++GR L+ LP+D+ L +MLV G   H +  +L + + LS+Q P  
Sbjct: 477 RLTEISAIDEARKLTAIGRTLARLPIDVQLARMLVEGEQLHALRELLVIVSFLSIQDPRE 536

Query: 667 NRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRFY 724
                    +TA         D   VLN ++ +    ++  +SK   WC R  +   R  
Sbjct: 537 RPGDARQQADTAHAVFADPKSDFAGVLNLWRAYHDAHEELTQSKLRDWCSRHFLSFMRMR 596

Query: 725 EVTKLRSQFKQVLGDSG 741
           E  +L  Q   V+G+ G
Sbjct: 597 EWRELHRQLLLVVGELG 613



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 82/131 (62%), Gaps = 4/131 (3%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R GPG+CYRLY E  ++  A ++ PE+ R S+ +++L ++ + LG+V  FPFLEAP   
Sbjct: 410 GRVGPGICYRLYDEADFAGRAAFTDPELLRSSLANVILRMLALKLGEVDDFPFLEAPDPR 469

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I    R LT+  AID   ++T +GR L+ LP+D+ L +MLV G   H +  +L++   +
Sbjct: 470 VIADGFRRLTEISAIDEARKLTAIGRTLARLPIDVQLARMLVEGEQLHALRELLVI---V 526

Query: 928 NFGAI-DSKER 937
           +F +I D +ER
Sbjct: 527 SFLSIQDPRER 537



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 73/110 (66%), Gaps = 3/110 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIA 92
           ++LP++   ++I+  + + +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRR+A
Sbjct: 83  DALPISARGEDIVKLIREHQVVVIAGETGSGKTTQLPKLCLAAGRGEAGMIGCTQPRRLA 142

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
             S+++RVA E  +    +VG+Q+RF     ++T + F+T+G+LL +  G
Sbjct: 143 ARSVARRVAEELGTPLGEVVGFQVRFNDQVSDRTLVKFMTDGILLAETQG 192



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D +LS+YD L++DE HER L+ DFLLG +K L     E+KII+ SATI+   F  
Sbjct: 188  AETQGDPWLSAYDTLIIDEAHERSLNIDFLLGYLKRLAIRRPELKIIVTSATIDTARFAE 247

Query: 1174 YFN 1176
            +F 
Sbjct: 248  HFG 250



 Score = 44.3 bits (103), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEE 1090
            AID   ++T++GR L+ LP+D+ L +MLV G   H +  +L++   ++F+  S ++  E 
Sbjct: 483  AIDEARKLTAIGRTLARLPIDVQLARMLVEGEQLHALRELLVI---VSFL--SIQDPRER 537

Query: 1091 AGERLESMDANEVEFRLKHDPKQVQVAADNFLSSY 1125
             G+  +  D     F    DPK       N   +Y
Sbjct: 538  PGDARQQADTAHAVF---ADPKSDFAGVLNLWRAY 569



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAI-DSKER 1037
            AID   ++T++GR L+ LP+D+ L +MLV G   H +  +L++   ++F +I D +ER
Sbjct: 483  AIDEARKLTAIGRTLARLPIDVQLARMLVEGEQLHALRELLVI---VSFLSIQDPRER 537


>gi|352085539|ref|ZP_08953159.1| ATP-dependent helicase HrpA [Rhodanobacter sp. 2APBS1]
 gi|351681960|gb|EHA65074.1| ATP-dependent helicase HrpA [Rhodanobacter sp. 2APBS1]
          Length = 1356

 Score =  273 bits (698), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 165/486 (33%), Positives = 270/486 (55%), Gaps = 21/486 (4%)

Query: 278 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337
            + V   D++ ER L      G++        E   D +LS+YD L++DE HER L+ DF
Sbjct: 159 GFQVRFNDQVSERSLVKFMTDGIL------LAETQGDPWLSTYDTLIIDEAHERSLNIDF 212

Query: 338 LLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVEL- 396
           LLG +K L     ++KII+ SATI+   F  +F+  A +++V GR YP++L +  + E+ 
Sbjct: 213 LLGYLKRLAARRPDLKIIVTSATIDTARFAEHFD-GAPVVEVEGRAYPVELRWRSLDEIA 271

Query: 397 -DRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSI--VRAAQEYNEKSQ 453
             + +S+ +  G    I +++D+      RGDVLIF+ G  EI     + + ++Y E   
Sbjct: 272 ARQGRSKDMQQGSAEHIAAVLDEITHDDPRGDVLIFLPGEREIRDAHQLLSRRQYRETE- 330

Query: 454 GWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSY 513
              ++PL++ LS  +QDRVF   P   R+ +++TN+AETS+T+  IR+V+D+G  +   Y
Sbjct: 331 ---IMPLYARLSAGDQDRVFK--PGVKRRVVLATNVAETSLTVPRIRYVIDTGTARVKRY 385

Query: 514 DVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSID 573
              +++  L    IS+A+A+QRKGR GR GPGVCYRLY E  ++  A ++ PE+ R S+ 
Sbjct: 386 SQRSQLERLHVEPISQAAADQRKGRCGRVGPGVCYRLYDEADFAGRAAFTDPELLRSSLA 445

Query: 574 SLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVD 633
           +++L ++ + LG+V +FPFLEAP    +    R L++  AID   ++T++GR L+ LP+D
Sbjct: 446 NVILRMLALKLGEVDEFPFLEAPDPRVVADGFRRLSEISAIDETRQLTAIGRTLARLPID 505

Query: 634 IPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVL 693
           + L +MLV G   H +  +L++ + LS+Q P           + A         D + VL
Sbjct: 506 VQLARMLVEGEQLHALRELLTIVSFLSIQDPRERPGDARQQADAAHAVFADPKSDFVGVL 565

Query: 694 NAYKEWLGVKKDRVRSK--KWCKRRGIEEQRFYEVTKLRSQFKQVLGDSG--LITDIPGP 749
           N ++ +    ++  +SK   WC R  +   R  E  +L  Q   V+ + G  L   IP  
Sbjct: 566 NLWRAYHDAHEELTQSKLRDWCARHFLSFMRMREWRELHRQLLLVVEELGWKLEAQIPAR 625

Query: 750 DASLSS 755
           D + S+
Sbjct: 626 DEARSA 631



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 82/131 (62%), Gaps = 4/131 (3%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R GPGVCYRLY E  ++  A ++ PE+ R S+ +++L ++ + LG+V +FPFLEAP   
Sbjct: 412 GRVGPGVCYRLYDEADFAGRAAFTDPELLRSSLANVILRMLALKLGEVDEFPFLEAPDPR 471

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    R L++  AID   ++T +GR L+ LP+D+ L +MLV G   H +  +L +   +
Sbjct: 472 VVADGFRRLSEISAIDETRQLTAIGRTLARLPIDVQLARMLVEGEQLHALRELLTI---V 528

Query: 928 NFGAI-DSKER 937
           +F +I D +ER
Sbjct: 529 SFLSIQDPRER 539



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 73/109 (66%), Gaps = 3/109 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLP++   ++I   + + +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRR+A 
Sbjct: 80  SLPISARGEDIARLIREHQVVVIAGETGSGKTTQLPKLCLAAGRGEAGMIGCTQPRRLAA 139

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
            S+++RVA E  +Q  ++VG+Q+RF     E++ + F+T+G+LL +  G
Sbjct: 140 RSVARRVAEELGTQVGDIVGFQVRFNDQVSERSLVKFMTDGILLAETQG 188



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 41/63 (65%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D +LS+YD L++DE HER L+ DFLLG +K L     ++KII+ SATI+   F  
Sbjct: 184  AETQGDPWLSTYDTLIIDEAHERSLNIDFLLGYLKRLAARRPDLKIIVTSATIDTARFAE 243

Query: 1174 YFN 1176
            +F+
Sbjct: 244  HFD 246



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 8/95 (8%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEE 1090
            AID   ++T++GR L+ LP+D+ L +MLV G   H +  +L +   ++F+  S ++  E 
Sbjct: 485  AIDETRQLTAIGRTLARLPIDVQLARMLVEGEQLHALRELLTI---VSFL--SIQDPRER 539

Query: 1091 AGERLESMDANEVEFRLKHDPKQVQVAADNFLSSY 1125
             G+  +  DA    F    DPK   V   N   +Y
Sbjct: 540  PGDARQQADAAHAVF---ADPKSDFVGVLNLWRAY 571



 Score = 41.2 bits (95), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAI-DSKER 1037
            AID   ++T++GR L+ LP+D+ L +MLV G   H +  +L +   ++F +I D +ER
Sbjct: 485  AIDETRQLTAIGRTLARLPIDVQLARMLVEGEQLHALRELLTI---VSFLSIQDPRER 539


>gi|322514239|ref|ZP_08067300.1| ATP-dependent helicase HrpA [Actinobacillus ureae ATCC 25976]
 gi|322119851|gb|EFX91865.1| ATP-dependent helicase HrpA [Actinobacillus ureae ATCC 25976]
          Length = 1299

 Score =  272 bits (696), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 263/472 (55%), Gaps = 21/472 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++++I+ SATI++E F  
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLRVIITSATIDVERFSR 248

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR +P+++ Y PIVE +       D      IL+ +D+      RGD+
Sbjct: 249 HFNN-APIIEVSGRTFPVEVRYRPIVEEN-------DQDQLQDILNAVDELQAEG-RGDI 299

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFMSG  EI     A Q+  ++ +   +LPL++ LS  EQ R+F   P GL + I++TN
Sbjct: 300 LIFMSGEREIRDTAEALQK--QELRFTEILPLYARLSAAEQQRIFQ--PSGLNRVILATN 355

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C 
Sbjct: 356 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTSEGICI 415

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    ++  VR L
Sbjct: 416 RLYSEEDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPNTRQVQDGVRLL 475

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GAI+   ++T++GR L+ LP+D  LG+M+V  +    +  V+ + + LS+Q P    
Sbjct: 476 EELGAINGN-KLTAIGRQLAQLPIDPRLGRMVVAAAQNGALHEVMMIVSALSIQDPRERP 534

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEV 726
             R    +   +       D L  +N +      +K+  ++  +K C++  +   R  E 
Sbjct: 535 QERQQAADEKHRRFADKDSDFLAFVNLWHYIQTQQKELTKNQFRKQCQKDFLNYLRVREW 594

Query: 727 TKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE 778
             +  Q +  + + GL   I   DA+      AL  G   LL  I  K +E+
Sbjct: 595 QDIYHQLRLPVREMGL--PINSEDANYQQIHTALLTG---LLSHIGMKDSEK 641



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 79/129 (61%), Gaps = 3/129 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    
Sbjct: 408 RTSEGICIRLYSEEDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPNTRQ 467

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           ++  VR L + GAI+   ++T +GR L+ LP+D  LG+M+V  +    +  ++++  AL+
Sbjct: 468 VQDGVRLLEELGAINGN-KLTAIGRQLAQLPIDPRLGRMVVAAAQNGALHEVMMIVSALS 526

Query: 929 FGAIDSKER 937
               D +ER
Sbjct: 527 IQ--DPRER 533



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRR 90
           T   LPV+  ++EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRR
Sbjct: 82  TYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRR 141

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  S++ R+A E  S+    VGY++RF     E T +  +T+G+LL
Sbjct: 142 LAARSVANRIAEELKSELGAAVGYKVRFNDQVGENTLVKLMTDGILL 188



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++++I+ SATI++E F  
Sbjct: 189  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLRVIITSATIDVERFSR 248

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 249  HFNNAPIIEVSGRT 262



 Score = 45.1 bits (105), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++  D +L+ YD LI+DE HER L  DF+LG +   LH
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILH 227


>gi|389798713|ref|ZP_10201723.1| ATP-dependent RNA helicase [Rhodanobacter sp. 116-2]
 gi|388444395|gb|EIM00508.1| ATP-dependent RNA helicase [Rhodanobacter sp. 116-2]
          Length = 1356

 Score =  272 bits (696), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 167/497 (33%), Positives = 275/497 (55%), Gaps = 28/497 (5%)

Query: 267 GEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLD 326
           GE+V        + V   D++ ER L      G++        E   D +LS+YD +++D
Sbjct: 155 GEVV-------GFQVRFNDQVSERSLVKFMTDGIL------LAETQGDPWLSAYDTIIID 201

Query: 327 EIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPI 386
           E HER L+ DFLLG +K L     ++KII+ SATI+   F  +F+  A +++V GR YP+
Sbjct: 202 EAHERSLNIDFLLGYLKRLAARRPDLKIIVTSATIDTARFAEHFDG-APVVEVEGRAYPV 260

Query: 387 QLEYHPIVEL--DRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSI--V 442
           +L +  + E+   + +S+ +  G    I +++D+      RGDVLIF+ G  EI     +
Sbjct: 261 ELRWRSLDEIAARQGRSKDMQQGSAEHIAAVLDEITHDDPRGDVLIFLPGEREIRDAHQL 320

Query: 443 RAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFV 502
            + ++Y E      ++PL++ LS  +QDRVF   P   R+ +++TN+AETS+T+  IR+V
Sbjct: 321 LSRRQYRETE----IMPLYARLSAGDQDRVFK--PGVKRRVVLATNVAETSLTVPRIRYV 374

Query: 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEY 562
           +D+G  +   Y   +++  L    IS+A+A+QRKGR GR GPGVCYRLY E  ++  A +
Sbjct: 375 IDTGTARVKRYSQRSQLERLHVEPISQAAADQRKGRCGRVGPGVCYRLYDEADFAGRAAF 434

Query: 563 STPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTS 622
           + PE+ R S+ +++L ++ + LG+V +FPFLEAP    +    R L++  AID   ++T+
Sbjct: 435 TDPELLRSSLANVILRMLALKLGEVDEFPFLEAPDPRVVADGFRRLSEISAIDETRQLTA 494

Query: 623 LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKEL 682
           +GR L+ LP+D+ L +MLV G   H +  +L++ + LS+Q P    +      + A    
Sbjct: 495 IGRTLARLPIDVQLARMLVEGEQLHALRELLTIVSFLSIQDPRERPSDARQQADAAHAVF 554

Query: 683 ESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRFYEVTKLRSQFKQVLGDS 740
                D + VLN ++ +    ++  +SK   WC R  +   R  E  +L  Q   V+ + 
Sbjct: 555 ADPKSDFVGVLNLWRAYHDAHEELTQSKLRDWCARHFLSFMRMREWRELHRQLLLVVEEL 614

Query: 741 G--LITDIPGPDASLSS 755
           G  L   IP  D + S+
Sbjct: 615 GWQLEAQIPARDEARSA 631



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 82/131 (62%), Gaps = 4/131 (3%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R GPGVCYRLY E  ++  A ++ PE+ R S+ +++L ++ + LG+V +FPFLEAP   
Sbjct: 412 GRVGPGVCYRLYDEADFAGRAAFTDPELLRSSLANVILRMLALKLGEVDEFPFLEAPDPR 471

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    R L++  AID   ++T +GR L+ LP+D+ L +MLV G   H +  +L +   +
Sbjct: 472 VVADGFRRLSEISAIDETRQLTAIGRTLARLPIDVQLARMLVEGEQLHALRELLTI---V 528

Query: 928 NFGAI-DSKER 937
           +F +I D +ER
Sbjct: 529 SFLSIQDPRER 539



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 72/110 (65%), Gaps = 3/110 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIA 92
            SLP++   ++I+  + + +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRR+A
Sbjct: 79  ESLPISARGEDIVKLIREHQVVVIAGETGSGKTTQLPKLCLAAGRGEAGMIGCTQPRRLA 138

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
             S+++RVA E  +    +VG+Q+RF     E++ + F+T+G+LL +  G
Sbjct: 139 ARSVARRVAEELGTPLGEVVGFQVRFNDQVSERSLVKFMTDGILLAETQG 188



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D +LS+YD +++DE HER L+ DFLLG +K L     ++KII+ SATI+   F  
Sbjct: 184  AETQGDPWLSAYDTIIIDEAHERSLNIDFLLGYLKRLAARRPDLKIIVTSATIDTARFAE 243

Query: 1174 YFN 1176
            +F+
Sbjct: 244  HFD 246



 Score = 43.5 bits (101), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEE 1090
            AID   ++T++GR L+ LP+D+ L +MLV G   H +  +L +   ++F+  S ++  E 
Sbjct: 485  AIDETRQLTAIGRTLARLPIDVQLARMLVEGEQLHALRELLTI---VSFL--SIQDPRER 539

Query: 1091 AGERLESMDANEVEFRLKHDPKQVQVAADNFLSSY 1125
              +  +  DA    F    DPK   V   N   +Y
Sbjct: 540  PSDARQQADAAHAVF---ADPKSDFVGVLNLWRAY 571



 Score = 41.2 bits (95), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAI-DSKER 1037
            AID   ++T++GR L+ LP+D+ L +MLV G   H +  +L +   ++F +I D +ER
Sbjct: 485  AIDETRQLTAIGRTLARLPIDVQLARMLVEGEQLHALRELLTI---VSFLSIQDPRER 539


>gi|389793248|ref|ZP_10196420.1| ATP-dependent RNA helicase, partial [Rhodanobacter fulvus Jip2]
 gi|388434728|gb|EIL91661.1| ATP-dependent RNA helicase, partial [Rhodanobacter fulvus Jip2]
          Length = 671

 Score =  271 bits (694), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 166/498 (33%), Positives = 266/498 (53%), Gaps = 39/498 (7%)

Query: 278 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337
            + V   D++ ER L      G++        E   D +LS+YD L++DE HER L+ DF
Sbjct: 163 GFQVRFNDQVSERSLIKFMTDGIL------LAETQGDPWLSAYDTLIIDEAHERSLNIDF 216

Query: 338 LLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPI---- 393
           LLG +K L     ++KII+ SATI+   F  +F   A ++ V GR YP++L + P+    
Sbjct: 217 LLGYLKQLAAKRPQLKIIVTSATIDTARFAEHFGG-APVVAVEGRAYPVELRWRPVDGAR 275

Query: 394 -------VELD--RTKSEKLDP---------GPYIRILSIIDKKYPRTERGDVLIFMSGI 435
                  V +D  R    +L P         G    I +++D+      RGDVLIF+ G 
Sbjct: 276 PPVGATSVAMDGARESGSRLKPLPQKASMQQGSAEHIAAVLDEISHDDPRGDVLIFLPGE 335

Query: 436 SEISSI--VRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETS 493
            EI     + + ++Y E      ++PL++ LS  +QDRVF   P   R+ +++TN+AETS
Sbjct: 336 REIRDAHQLLSRRQYRETE----IMPLYARLSAGDQDRVFK--PGIKRRVVLATNVAETS 389

Query: 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553
           +T+  IR+V+D+G  +   Y   +++  L    +S+A+A+QRKGR GR GPG+CYRLY E
Sbjct: 390 LTVPRIRYVIDTGTARVKRYSQRSQLERLHVEPVSQAAADQRKGRCGRVGPGICYRLYDE 449

Query: 554 EQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGA 613
             ++  A ++ PE+ R S+ +++L ++ + LGDV +FPFL+AP    +    R L +  A
Sbjct: 450 VDFAGRAAFTDPELLRSSLANVILRMLALKLGDVEQFPFLDAPDPRVVADGYRRLAEIAA 509

Query: 614 IDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDP 673
           ID   ++T++G  L+ LP+D+ L +MLV G   H +  +L++ + LS+Q P    +    
Sbjct: 510 IDDARKLTAIGHTLARLPIDVQLARMLVEGEKLHSLRELLTIVSFLSIQDPRERPSDARQ 569

Query: 674 DCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRFYEVTKLRS 731
             +TA         D + VLN +K +    ++  +SK   WC R  +   R  E  +L  
Sbjct: 570 QADTAHAVFADPKSDFVGVLNLWKAYHDAHEELTQSKLRDWCSRHFLSFMRMREWRELHR 629

Query: 732 QFKQVLGDSGLITDIPGP 749
           Q   V+G+ G   D+  P
Sbjct: 630 QLLLVVGELGWKLDVHAP 647



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 80/131 (61%), Gaps = 4/131 (3%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R GPG+CYRLY E  ++  A ++ PE+ R S+ +++L ++ + LGDV +FPFL+AP   
Sbjct: 436 GRVGPGICYRLYDEVDFAGRAAFTDPELLRSSLANVILRMLALKLGDVEQFPFLDAPDPR 495

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    R L +  AID   ++T +G  L+ LP+D+ L +MLV G   H +  +L +   +
Sbjct: 496 VVADGYRRLAEIAAIDDARKLTAIGHTLARLPIDVQLARMLVEGEKLHSLRELLTI---V 552

Query: 928 NFGAI-DSKER 937
           +F +I D +ER
Sbjct: 553 SFLSIQDPRER 563



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 80/126 (63%), Gaps = 4/126 (3%)

Query: 20  KQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG 79
           K++ + +    IR   +SLP++    +I+  + + +VV+IAG+TG GK+TQ+P+  + AG
Sbjct: 68  KRRTRVAAKPAIR-LDDSLPISARADDIVKLIREHQVVVIAGETGSGKTTQLPKLCLAAG 126

Query: 80  FQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLL 136
                 I CTQPRR+A  S+++RVA E  +   ++VG+Q+RF     E++ I F+T+G+L
Sbjct: 127 RGEAGMIGCTQPRRLAARSVARRVAEELGTPVGDIVGFQVRFNDQVSERSLIKFMTDGIL 186

Query: 137 LRQDSG 142
           L +  G
Sbjct: 187 LAETQG 192



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 40/63 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D +LS+YD L++DE HER L+ DFLLG +K L     ++KII+ SATI+   F  
Sbjct: 188  AETQGDPWLSAYDTLIIDEAHERSLNIDFLLGYLKQLAAKRPQLKIIVTSATIDTARFAE 247

Query: 1174 YFN 1176
            +F 
Sbjct: 248  HFG 250



 Score = 40.8 bits (94), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 1029 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEE 1088
              AID   ++T++G  L+ LP+D+ L +MLV G   H +  +L +   ++F+  S ++  
Sbjct: 507  IAAIDDARKLTAIGHTLARLPIDVQLARMLVEGEKLHSLRELLTI---VSFL--SIQDPR 561

Query: 1089 EEAGERLESMDANEVEFRLKHDPKQVQVAADNFLSSY 1125
            E   +  +  D     F    DPK   V   N   +Y
Sbjct: 562  ERPSDARQQADTAHAVF---ADPKSDFVGVLNLWKAY 595


>gi|119577877|gb|EAW57473.1| DEAH (Asp-Glu-Ala-His) box polypeptide 34, isoform CRA_a [Homo
           sapiens]
 gi|119577879|gb|EAW57475.1| DEAH (Asp-Glu-Ala-His) box polypeptide 34, isoform CRA_a [Homo
           sapiens]
          Length = 578

 Score =  271 bits (694), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 127/203 (62%), Positives = 157/203 (77%)

Query: 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKAS 531
           VF  AP G+RKCI+STNIAETS+TIDGIRFVVDSGKVKEMSYD  AK+  LQEFWIS+AS
Sbjct: 340 VFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQAS 399

Query: 532 AEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFP 591
           AEQRKGRAGRTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M +GD R FP
Sbjct: 400 AEQRKGRAGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFP 459

Query: 592 FLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDT 651
           F+E PP  ++E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ 
Sbjct: 460 FIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEP 519

Query: 652 VLSLAAVLSVQSPFTNRAFRDPD 674
           VL++AA LSVQSPFT  A   P+
Sbjct: 520 VLTIAAALSVQSPFTRSAQSSPE 542



 Score =  173 bits (439), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 102/132 (77%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           E++  L  YLDF QK+ F  L K++  + +LP+AQY   I+ T+ + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGK 191

Query: 68  STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           STQ+PQYL+ AGF  +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE  R   TK
Sbjct: 192 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 251

Query: 128 IVFITEGLLLRQ 139
           IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263



 Score =  133 bits (335), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 1/137 (0%)

Query: 792 YEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMG 851
           + I +   E+   R   RTGPGVC+RLY+E  Y   A Y  PEIRRV++DSL+L +  M 
Sbjct: 393 FWISQASAEQRKGR-AGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMS 451

Query: 852 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
           +GD R FPF+E PP  ++E+++  L   GA+DS E +T +G  L+ LPVD+ +GKML+ G
Sbjct: 452 VGDPRTFPFIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILG 511

Query: 912 SMFHQIDTMLLLDLALN 928
           SMF  ++ +L +  AL+
Sbjct: 512 SMFSLVEPVLTIAAALS 528



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 61/77 (79%), Gaps = 1/77 (1%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           ++  +  L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSY 322

Query: 370 FNRIAKIIKVPGRLYPI 386
           F+  A +++VPGRL+PI
Sbjct: 323 FSN-APVVQVPGRLFPI 338



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 49/62 (79%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            Q+  +  L  Y+VL++DE+HERHLH DFLLGV++ LL +  ++K+ILMSATINI LF +Y
Sbjct: 263  QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSY 322

Query: 1175 FN 1176
            F+
Sbjct: 323  FS 324



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 980  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 480  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 528



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
            GA+DS E +T +G  L+ LPVD+ +GKML+ GSMF  ++ +L +  AL+
Sbjct: 480  GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 528



 Score = 47.0 bits (110), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           Q+  +  L  Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295


>gi|417843200|ref|ZP_12489277.1| ATP-dependent RNA helicase hrpA [Haemophilus haemolyticus M21127]
 gi|341950434|gb|EGT77023.1| ATP-dependent RNA helicase hrpA [Haemophilus haemolyticus M21127]
          Length = 1303

 Score =  271 bits (694), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 173/495 (34%), Positives = 270/495 (54%), Gaps = 35/495 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+     ERGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDE-LQAEERGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEDDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLL 472

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K R+T +GR L+ LPVD  L KML+    F  +  ++ + + LS+
Sbjct: 473 EELGAFETIQTKSCEKRRLTRIGRQLAQLPVDPRLAKMLLSAVDFGSVYEMMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAY----KEWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN +    ++   + K++ R +  C++  
Sbjct: 533 QDPRERPTEKQQASDEKHRRFADKKSDFLAFLNLWNYVQEQQKALTKNQFRRQ--CQKDF 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE
Sbjct: 591 LNYLRIREWQDIYQQIRLTVREMGL--PINSEKAEYPQIHIALLSG---LLSHIGLKEAE 645

Query: 778 EAPKRRKMLKADNAY 792
               +++ L A NA+
Sbjct: 646 ----KQQYLGARNAH 656



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 9/138 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEDDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  V+ L + GA ++       K R+T +GR L+ LPVD  L KML+    F  +  M+
Sbjct: 465 IQDGVKLLEELGAFETIQTKSCEKRRLTRIGRQLAQLPVDPRLAKMLLSAVDFGSVYEMM 524

Query: 922 LLDLALNFGAIDSKERVT 939
           ++  AL+    D +ER T
Sbjct: 525 IIVSALSIQ--DPRERPT 540



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+   + GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKAEIEKLLSEHQVIVVAGETGSGKTTQLPKMCFELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|121998170|ref|YP_001002957.1| ATP-dependent helicase HrpA [Halorhodospira halophila SL1]
 gi|121589575|gb|ABM62155.1| ATP-dependent helicase HrpA [Halorhodospira halophila SL1]
          Length = 1312

 Score =  271 bits (694), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 155/434 (35%), Positives = 240/434 (55%), Gaps = 14/434 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+ +D  L +YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQSDRHLDAYDTLIIDEAHERSLNIDFILGYLKRLLPRRPDLKVIVTSATIDPERFAE 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A + +V GR YP+++ Y P  E +  +  +         ++    +  R  RGDV
Sbjct: 240 HFD-GAPVREVSGRTYPVEIRYRPYEEREGVEQPQ--------AVTEAVHELAREGRGDV 290

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG  EI     A +      +G  +LPL++ LS  EQ RVFH    G R+ +++TN
Sbjct: 291 LVFLSGEREIRECAEALR--KNPPRGTEILPLYARLSSAEQQRVFHPG-SGGRRVVLATN 347

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GIR+VVD+G+ +   Y    K+S L    I++ASA+QR GR GR  PG+C 
Sbjct: 348 VAETSLTVPGIRYVVDTGRARISRYSHRTKVSRLPVEPIAQASADQRAGRCGREAPGICI 407

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE Y     Y+ PEI R ++  ++L +  MGLGD+ +FPF+E P    I  ++R L
Sbjct: 408 RLYSEEDYESRPRYTDPEILRTNLAGVILQMKAMGLGDIERFPFVEPPERRYINDALRLL 467

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GA+D    +T LGR L+ +P D  +G+ML+          +L +AA LSVQ P    
Sbjct: 468 FELGAVDEGRELTDLGRRLARIPADPRIGRMLLAAREAGVQREILIIAAALSVQDPRERP 527

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRFYEV 726
                  + A         D   +L  + ++   ++   R K  +WC+   +  QR  E 
Sbjct: 528 MEAQEAADRAHARWHDPKSDFAALLRLWDDYQAQRRGLSRRKLTQWCREHFLAPQRMREW 587

Query: 727 TKLRSQFKQVLGDS 740
             +R QF ++L ++
Sbjct: 588 ADIRRQFAEMLKEA 601



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PG+C RLYSEE Y     Y+ PEI R ++  ++L +  MGLGD+ +FPF+E P   
Sbjct: 399 GREAPGICIRLYSEEDYESRPRYTDPEILRTNLAGVILQMKAMGLGDIERFPFVEPPERR 458

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I  ++R L + GA+D    +T LGR L+ +P D  +G+ML+          +L++  AL
Sbjct: 459 YINDALRLLFELGAVDEGRELTDLGRRLARIPADPRIGRMLLAAREAGVQREILIIAAAL 518

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 519 SVQ--DPRER 526



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 70/108 (64%), Gaps = 3/108 (2%)

Query: 33  ETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPR 89
           E    LPV Q ++E+++ + + +VV++ G TG GKSTQ+P+  ++ G      I  TQPR
Sbjct: 72  EYDPDLPVVQRREELLEALREHQVVVVCGATGSGKSTQLPKMCMELGLGTRGLIGHTQPR 131

Query: 90  RIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           RIA  +L++R+A ET ++    VGY++RF     E++++  +T+G+LL
Sbjct: 132 RIAARALAERLAEETGTRVGETVGYKVRFTDQVGEQSRVKLLTDGMLL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++ +D  L +YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQSDRHLDAYDTLIIDEAHERSLNIDFILGYLKRLLPRRPDLKVIVTSATIDPERFAE 239

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 240  HFDGAPVREVSGRT 253


>gi|372273283|ref|ZP_09509331.1| ATP-dependent helicase HrpA [Marinobacterium stanieri S30]
          Length = 1304

 Score =  271 bits (694), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 255/437 (58%), Gaps = 23/437 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D FL  Y+VL++DE HER L+ DFLLG IK +L    ++K+I+ SATI++E F  +
Sbjct: 174 ETQRDRFLEQYEVLIIDEAHERSLNIDFLLGYIKRILPRRPDLKVIITSATIDLERFSKH 233

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELD--RTKSEKLDPGPYIRILSIIDK--KYPRTER 425
           F+  A +I+V GR YP+ + Y P+ E++    K+  L  G    +LS +D+  +    +R
Sbjct: 234 FDN-APVIEVSGRTYPVDVLYRPLHEMEGEDEKAVDLQQG----LLSAVDELIEIDLAKR 288

Query: 426 ----GDVLIFMSG---ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               GD+L+F+ G   I E +  +R A+  + +     V+ L++ LSL EQ+RVFH   +
Sbjct: 289 SGGPGDILVFLPGEREIRETAETLRKAKLRDTE-----VISLYARLSLTEQNRVFHEQRK 343

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
             R+ ++STN+AETS+T+ GIR+V+D G+ +   Y V +K+  L    +S+ASA QR GR
Sbjct: 344 AGRRIVLSTNVAETSLTVPGIRYVIDPGQARISRYSVRSKVQRLPVEAVSQASANQRAGR 403

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
            GR  PGVC RLYSEE Y    E++  EIRR ++ +++L ++ + LGD+R FPF++ P  
Sbjct: 404 CGRVAPGVCIRLYSEEDYLSRPEFTDAEIRRTNLAAVILQMLQLKLGDIRDFPFVDPPDT 463

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
             I    + L + GA+D++ R+T +GR L+ LPVD  + +M++ G     +  V+ +A+ 
Sbjct: 464 RLINDGFKLLEELGAVDTQRRMTKIGRQLARLPVDPRIARMVIEGGQRDALREVMIIASA 523

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRR 716
           LSVQ P      +    +   KE      D +T+LN ++ W   +++  +S  ++WC++ 
Sbjct: 524 LSVQDPRERPHDKRQAADQKHKEYADEESDFMTLLNLWQLWSEQREELSQSQLRRWCQKN 583

Query: 717 GIEEQRFYEVTKLRSQF 733
            +   R  E   +  Q 
Sbjct: 584 FLSFMRLREWRDVHRQL 600



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 79/130 (60%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PGVC RLYSEE Y    E++  EIRR ++ +++L ++ + LGD+R FPF++ P   
Sbjct: 405 GRVAPGVCIRLYSEEDYLSRPEFTDAEIRRTNLAAVILQMLQLKLGDIRDFPFVDPPDTR 464

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I    + L + GA+D++ R+T +GR L+ LPVD  + +M++ G     +  ++++  AL
Sbjct: 465 LINDGFKLLEELGAVDTQRRMTKIGRQLARLPVDPRIARMVIEGGQRDALREVMIIASAL 524

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 525 SVQ--DPRER 532



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+  ++E++D +   +VV+IAG+TG GK+TQIP+  ++ G   +  I  TQPRR+A  
Sbjct: 70  LPVSARREELLDAIRDNQVVVIAGETGSGKTTQIPKLCLELGLGCYGMIGHTQPRRLAAR 129

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ R+A E  +     VGYQ+RF     E T++  +T+G+LL
Sbjct: 130 TVASRIAEELKTPLGERVGYQVRFHDQVSESTQVKLMTDGILL 172



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 46/69 (66%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D FL  Y+VL++DE HER L+ DFLLG IK +L    ++K+I+ SATI++E F  +F+  
Sbjct: 178  DRFLEQYEVLIIDEAHERSLNIDFLLGYIKRILPRRPDLKVIITSATIDLERFSKHFDNA 237

Query: 1179 AKDLLSGST 1187
                +SG T
Sbjct: 238  PVIEVSGRT 246



 Score = 41.2 bits (95), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 21/29 (72%)

Query: 231 DNFLSSYDILILDEVHERHLYGDFLLGVI 259
           D FL  Y++LI+DE HER L  DFLLG I
Sbjct: 178 DRFLEQYEVLIIDEAHERSLNIDFLLGYI 206


>gi|358449055|ref|ZP_09159547.1| ATP-dependent helicase HrpA [Marinobacter manganoxydans MnI7-9]
 gi|357226850|gb|EHJ05323.1| ATP-dependent helicase HrpA [Marinobacter manganoxydans MnI7-9]
          Length = 1287

 Score =  271 bits (693), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 172/487 (35%), Positives = 270/487 (55%), Gaps = 22/487 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            EV  D FL  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI +E F  
Sbjct: 165 AEVQHDRFLDRYDTIIIDEAHERSLNIDFLLGYLRQLLPKRPDLKIIITSATIEVERFSE 224

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIV--ELDRTKSEKLDPGPYIRILSIIDK--KYPRTE 424
           +F++ A +I+V GR YP+ + Y P+   E DR      D G    +L  +D+  ++ R++
Sbjct: 225 FFDK-APVIEVSGRTYPVDVRYRPLTGDEDDR------DQGWTDGVLGALDEIEQHERSQ 277

Query: 425 R---GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR 481
           +   GDVL+F+ G  EI ++ +  +  + +     VLPL+S LS  EQ+RVF  + +G R
Sbjct: 278 KQPPGDVLVFLPGEREIRNLSKVLRHVDLRHTE--VLPLYSRLSNAEQNRVFQ-SHKG-R 333

Query: 482 KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
           + ++STN+AETS+T+ GIR+V+D+G  +   Y V +K+  L    IS+ASA QR GR GR
Sbjct: 334 RIVLSTNVAETSLTVPGIRYVIDTGVARISRYSVRSKIQRLPVEPISQASANQRAGRCGR 393

Query: 542 TGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENI 601
             PG+C+RLY E  +    EY+ PEI R ++ S++L +   GLG++R+FPFLEAP    +
Sbjct: 394 VAPGICFRLYDETDFINRPEYTDPEILRTNLASVILQMATSGLGEIRQFPFLEAPDKRQV 453

Query: 602 ESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
               + L + GA+D K RVT LGR +S LP+D  L +MLV  +    +   L + A LS+
Sbjct: 454 NDGYKLLEELGAVDDKRRVTRLGRTMSRLPLDPRLARMLVTAAELGSLAETLVIIAGLSI 513

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    + A         D +T+LN +  +   +++  ++  KK C++  + 
Sbjct: 514 QDPRERPQDKQQAADQAHAPFNDKESDFVTLLNVWNFYEEQRQELSQNQLKKVCQKNFLS 573

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q   +  +  L  +     AS  S  +A+  G +  +     KK   A
Sbjct: 574 WMRMREWRDIHRQLTLICREQKLAVNKDA--ASYESLHKAILAGLLGQVAVKVEKKEYLA 631

Query: 780 PKRRKML 786
            + RK+L
Sbjct: 632 TRNRKVL 638



 Score =  103 bits (257), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PG+C+RLY E  +    EY+ PEI R ++ S++L +   GLG++R+FPFLEAP   
Sbjct: 392 GRVAPGICFRLYDETDFINRPEYTDPEILRTNLASVILQMATSGLGEIRQFPFLEAPDKR 451

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GA+D K RVT LGR +S LP+D  L +MLV  +    +   L++   L
Sbjct: 452 QVNDGYKLLEELGAVDDKRRVTRLGRTMSRLPLDPRLARMLVTAAELGSLAETLVIIAGL 511

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 512 SIQ--DPRER 519



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIAC 93
            LPV++   +I + +   +VVIIAG+TG GK+TQIP+  + +G      I  TQPRRIA 
Sbjct: 61  GLPVSERVDDIREAIENHQVVIIAGETGSGKTTQIPKICMNSGRGIRGLIGHTQPRRIAA 120

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E   Q    +GYQ+RF  +  E++++  +T+G+LL
Sbjct: 121 RSVAARIAEEIGEQTGQQIGYQVRFTDNTSEQSRVKVMTDGILL 164



 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +V  D FL  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI +E F  
Sbjct: 165  AEVQHDRFLDRYDTIIIDEAHERSLNIDFLLGYLRQLLPKRPDLKIIITSATIEVERFSE 224

Query: 1174 YFNRIAKDLLSGST 1187
            +F++     +SG T
Sbjct: 225  FFDKAPVIEVSGRT 238



 Score = 41.2 bits (95), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 192 AYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQV---QVATDNFLSSYDILILDEVHER 248
           A EI E+  ++ G ++   D    + R+K     +   +V  D FL  YD +I+DE HER
Sbjct: 128 AEEIGEQTGQQIGYQVRFTDNTSEQSRVKVMTDGILLAEVQHDRFLDRYDTIIIDEAHER 187

Query: 249 HLYGDFLLGVI 259
            L  DFLLG +
Sbjct: 188 SLNIDFLLGYL 198



 Score = 40.8 bits (94), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 1029 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEE 1088
             GA+D K RVT LGR +S LP+D  L +MLV  +    +   L++   L+     E  ++
Sbjct: 463  LGAVDDKRRVTRLGRTMSRLPLDPRLARMLVTAAELGSLAETLVIIAGLSIQDPRERPQD 522

Query: 1089 EE 1090
            ++
Sbjct: 523  KQ 524


>gi|325578738|ref|ZP_08148785.1| ATP-dependent helicase HrpA [Haemophilus parainfluenzae ATCC 33392]
 gi|325159562|gb|EGC71694.1| ATP-dependent helicase HrpA [Haemophilus parainfluenzae ATCC 33392]
          Length = 1305

 Score =  271 bits (692), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 172/493 (34%), Positives = 268/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K ++T++GR LS LPVD  L KML+       +  V+ + A LS+
Sbjct: 473 EELGAFEMVRTKSGEKRQLTAVGRQLSQLPVDPRLAKMLLTAVSQGALHEVMIIVAALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN ++     +K+  ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKELSKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGAHNAH 656



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q+K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQHKAEIEKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELKTELGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA +        K ++T +GR LS LPVD  L KML+       +  ++
Sbjct: 465 IQDGIKLLEELGAFEMVRTKSGEKRQLTAVGRQLSQLPVDPRLAKMLLTAVSQGALHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVAALSIQ--DPRER 538



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|340380039|ref|XP_003388531.1| PREDICTED: putative uncharacterized protein At4g01020,
           chloroplastic-like [Amphimedon queenslandica]
          Length = 1673

 Score =  271 bits (692), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 164/441 (37%), Positives = 250/441 (56%), Gaps = 24/441 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E+ AD +L  Y  LV+DE HER L+ D LL +IK  L    E++II+ SATIN ++F  Y
Sbjct: 326 EIIADPWLRQYSCLVIDEAHERSLNTDILLSLIKQCLLQRPELRIIITSATINPDIFVKY 385

Query: 370 F--NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           F  +    +++V GR +P+++ ++P+          L        LS++ K +     GD
Sbjct: 386 FGGSVSCPVVRVSGRTFPVEVIWNPLSIQYSADCTPLTIDIVNNCLSVVKKIHTEEPDGD 445

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           VL+F+S + +I +   AA    ++    +VLPLH  L  +EQ RVF   P G RK + ST
Sbjct: 446 VLVFLSSLGDIETACSAA---TDEFPDAVVLPLHGRLQPDEQRRVFEDVP-GRRKIVFST 501

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+TI GI+++VDSG  KEM +D    M++L+E  ISK+SAEQRKGRAGR   G C
Sbjct: 502 NVAETSVTIPGIKYIVDSGLAKEMCFDPKRNMNSLEECLISKSSAEQRKGRAGRVSAGKC 561

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
           YR+Y+E+QY  + E + PEI R+ +   +L L   G+ D+  F F+E P    ++S+V +
Sbjct: 562 YRIYTEDQYYNMRERTPPEILRMHLIHAVLKLYEFGIADILSFDFVEKPDQATLKSAVDT 621

Query: 608 LTQHGAID---SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ-S 663
           L   GA++   S++R+T  GR L+ LP+D  LGK+L+ G     I+  + L A +SV  S
Sbjct: 622 LQFLGAVNDGSSQDRLTKFGRQLAILPIDPQLGKVLLDG-----IEAGIGLEAAVSVSLS 676

Query: 664 PFTNRAFRDPDCETARKELES-------NHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRR 716
            F    F     + A++E +        + GD +T L+ YK+W   KK+     +WC R 
Sbjct: 677 SFGGNVFYRAGNDEAKRESDRMKIQFVHSGGDQMTCLSVYKKWSSCKKE--ERNRWCVRN 734

Query: 717 GIEEQRFYEVTKLRSQFKQVL 737
            I  +    V +   + + +L
Sbjct: 735 YINAKSMRMVEETVKELRHIL 755



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 12/122 (9%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLP+   + +II+TV + +VV++ G+TG GKSTQI QYL  AGF     IACTQPR++A 
Sbjct: 221 SLPIYARRSDIINTVTRNQVVVLIGETGSGKSTQIVQYLYDAGFGERGLIACTQPRKVAA 280

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLL---------LRQDSGLI 144
           I+L+  V+ E  S    +VG+++        +T IV++T+  L         LRQ S L+
Sbjct: 281 ITLANHVSKEMCSSVGEVVGHRLGSFDSTSSETVIVYMTDHSLLNEIIADPWLRQYSCLV 340

Query: 145 TD 146
            D
Sbjct: 341 ID 342



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 5/133 (3%)

Query: 782 RRKMLKADNAYEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSID 841
           +R M   +     +   E+ +G     R   G CYR+Y+E+QY  + E + PEI R+ + 
Sbjct: 530 KRNMNSLEECLISKSSAEQRKGR--AGRVSAGKCYRIYTEDQYYNMRERTPPEILRMHLI 587

Query: 842 SLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID---SKERVTTLGRFLSDL 898
             +L L   G+ D+  F F+E P    ++S+V +L   GA++   S++R+T  GR L+ L
Sbjct: 588 HAVLKLYEFGIADILSFDFVEKPDQATLKSAVDTLQFLGAVNDGSSQDRLTKFGRQLAIL 647

Query: 899 PVDIPLGKMLVFG 911
           P+D  LGK+L+ G
Sbjct: 648 PIDPQLGKVLLDG 660



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 7/107 (6%)

Query: 1076 ALNFVHHSEEEEEEEAGE----RLESMDANEVEFRLKHDPKQV---QVAADNFLSSYDVL 1128
            A+   +H  +E     GE    RL S D+   E  + +        ++ AD +L  Y  L
Sbjct: 280  AITLANHVSKEMCSSVGEVVGHRLGSFDSTSSETVIVYMTDHSLLNEIIADPWLRQYSCL 339

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            V+DE HER L+ D LL +IK  L    E++II+ SATIN ++F  YF
Sbjct: 340  VIDEAHERSLNTDILLSLIKQCLLQRPELRIIITSATINPDIFVKYF 386


>gi|165975825|ref|YP_001651418.1| ATP-dependent RNA helicase HrpA [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875926|gb|ABY68974.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 1299

 Score =  271 bits (692), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 152/436 (34%), Positives = 246/436 (56%), Gaps = 16/436 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR +P+++ Y P+VE +       D      I++ +D+      RGD+
Sbjct: 249 HFNN-APIIEVSGRTFPVEVRYRPVVEEE-------DQDQLQGIINAVDELQAEG-RGDI 299

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFMSG  EI     A Q+   K     +LPL++ LS  EQ R+F   P GL + I++TN
Sbjct: 300 LIFMSGEREIRDTAEALQKQELKFTE--ILPLYARLSAAEQQRIFQ--PSGLNRVILATN 355

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C 
Sbjct: 356 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTSEGICI 415

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    ++  +R L
Sbjct: 416 RLYSEEDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQVQDGIRLL 475

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GAI+   ++T++GR L+ LP+D  LG+M +  +    +  V+ + + LS+Q P    
Sbjct: 476 EELGAINGN-KLTTIGRQLAQLPIDPRLGRMAISAAQNGSLHEVMMIVSALSIQDPRERP 534

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEV 726
             R    +   +       D L  +N +      +K+  ++  +K C++  +   R  E 
Sbjct: 535 QERQQAADEKHRRFADKDSDFLAFVNLWHYIQTQQKELTKNQFRKQCQKDFLNYLRVREW 594

Query: 727 TKLRSQFKQVLGDSGL 742
             +  Q +  + + GL
Sbjct: 595 QDIYHQLRLAVREMGL 610



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 79/129 (61%), Gaps = 3/129 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    
Sbjct: 408 RTSEGICIRLYSEEDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQ 467

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           ++  +R L + GAI+   ++TT+GR L+ LP+D  LG+M +  +    +  ++++  AL+
Sbjct: 468 VQDGIRLLEELGAINGN-KLTTIGRQLAQLPIDPRLGRMAISAAQNGSLHEVMMIVSALS 526

Query: 929 FGAIDSKER 937
               D +ER
Sbjct: 527 IQ--DPRER 533



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRR 90
           T   LPV+  ++EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRR
Sbjct: 82  TYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRR 141

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  S++ R+A E  S+    VGY++RF     E T +  +T+G+LL
Sbjct: 142 LAARSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILL 188



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 249  HFNNAPIIEVSGRT 262



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++  D +L+ YD LI+DE HER L  DF+LG +   LH
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILH 227


>gi|307249585|ref|ZP_07531572.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858440|gb|EFM90509.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 1299

 Score =  271 bits (692), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 151/436 (34%), Positives = 249/436 (57%), Gaps = 16/436 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR +P+++ Y P+VE +       D      I++ +D+      RGD+
Sbjct: 249 HFNN-APIIEVSGRTFPVEVRYRPVVEEE-------DQDQLQGIINAVDELQAEG-RGDI 299

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFMSG  EI     A Q+  ++ +   +LPL++ LS  EQ R+F   P GL + I++TN
Sbjct: 300 LIFMSGEREIRDTAEALQK--QELRFTEILPLYARLSAAEQQRIFQ--PSGLNRVILATN 355

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C 
Sbjct: 356 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTSEGICI 415

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    ++  +R L
Sbjct: 416 RLYSEEDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQVQDGIRLL 475

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GAI+   ++T++GR L+ LP+D  LG+M++  +    +  V+ + + LS+Q P    
Sbjct: 476 EELGAINGN-KLTAIGRQLAQLPIDPRLGRMVIAAAQNGSLHEVMMIVSALSIQDPRERP 534

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEV 726
             R    +   +       D L  +N +      +K+  ++  +K C++  +   R  E 
Sbjct: 535 QERQQAADEKHRRFADKDSDFLAFVNLWHYIQTQQKELTKNQFRKQCQKDFLNYLRVREW 594

Query: 727 TKLRSQFKQVLGDSGL 742
             +  Q +  + + GL
Sbjct: 595 QDIYHQLRLAVREMGL 610



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 79/129 (61%), Gaps = 3/129 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    
Sbjct: 408 RTSEGICIRLYSEEDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQ 467

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           ++  +R L + GAI+   ++T +GR L+ LP+D  LG+M++  +    +  ++++  AL+
Sbjct: 468 VQDGIRLLEELGAINGN-KLTAIGRQLAQLPIDPRLGRMVIAAAQNGSLHEVMMIVSALS 526

Query: 929 FGAIDSKER 937
               D +ER
Sbjct: 527 IQ--DPRER 533



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 73/120 (60%), Gaps = 11/120 (9%)

Query: 29  MKIRETQNS--------LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF 80
            + R+TQ+S        LPV+  ++EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G 
Sbjct: 69  FQARKTQHSNLEITYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGR 128

Query: 81  Q---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
                I  TQPRR+A  S++ R+A E  S+    VGY++RF     E T +  +T+G+LL
Sbjct: 129 GVKGLIGHTQPRRLAARSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILL 188



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 249  HFNNAPIIEVSGRT 262



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++  D +L+ YD LI+DE HER L  DF+LG +   LH
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILH 227


>gi|373466909|ref|ZP_09558218.1| ATP-dependent helicase HrpA [Haemophilus sp. oral taxon 851 str.
           F0397]
 gi|371759673|gb|EHO48385.1| ATP-dependent helicase HrpA [Haemophilus sp. oral taxon 851 str.
           F0397]
          Length = 1304

 Score =  271 bits (692), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 172/495 (34%), Positives = 269/495 (54%), Gaps = 35/495 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K ++T++GR L+ LPVD  L KML+    F  +  V+ + + LS+
Sbjct: 473 EELGAFEMVRTKAGEKRQLTAVGRQLAQLPVDPRLAKMLLSAVDFGSVYEVMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAY----KEWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN +    ++   + K++ R +  C++  
Sbjct: 533 QDPRERPTEKQQASDEKHRRFADKKSDFLAFLNLWNYVQEQQKALTKNQFRRQ--CQKDF 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE
Sbjct: 591 LNYLRIREWQDIYQQIRLAVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE 645

Query: 778 EAPKRRKMLKADNAY 792
               +++ L A NA+
Sbjct: 646 ----KQQYLGARNAH 656



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 9/138 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA +        K ++T +GR L+ LPVD  L KML+    F  +  ++
Sbjct: 465 IQDGIKLLEELGAFEMVRTKAGEKRQLTAVGRQLAQLPVDPRLAKMLLSAVDFGSVYEVM 524

Query: 922 LLDLALNFGAIDSKERVT 939
           ++  AL+    D +ER T
Sbjct: 525 IIVSALSIQ--DPRERPT 540



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           +LPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  NLPVSQRKAEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  +LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGSLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|346974552|gb|EGY18004.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
            [Verticillium dahliae VdLs.17]
          Length = 1357

 Score =  270 bits (691), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 172/479 (35%), Positives = 268/479 (55%), Gaps = 38/479 (7%)

Query: 299  GVIKCLLHSTVEVAADNFLSSYDV--LVLDEIHERHLHGDFLLGVIKCLLHSTAEV-KII 355
            GV+   L ++     D   S  DV  +V+DE+HER L  DFLL +++ ++ +  ++ K++
Sbjct: 696  GVLLRRLQTSGGRVEDVIASLADVSHIVIDEVHERSLDTDFLLTIVREVMSTRKDLLKLV 755

Query: 356  LMSATINIELFHTYFN----RIAKIIKVPGRLYPIQLEY-HPIVELDRTKSEKLDP---- 406
            LMSAT++   F  YF     R+  ++++ GR YP++  Y   I+ +   K++  D     
Sbjct: 756  LMSATLDAASFENYFRSQGLRVG-LVEIEGRTYPVEDYYMDDIISMTGFKADAYDSRSET 814

Query: 407  -GPYIRIL-------------SIIDKKYPRTER-GDVLIFMSGISEISSIVRAAQEYNEK 451
             G  I+ L             S ID +    E+ G +L+F+ G++EIS   RA    +  
Sbjct: 815  LGQTIQKLGHRINYSLLNETISTIDLELSYQEKEGGILVFLPGVAEISQTCRALSSNSSL 874

Query: 452  SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEM 511
                 VLPLH++L   EQ RVF  AP G RK +V+TN+AETSITID I  VVDSGKVKE 
Sbjct: 875  H----VLPLHASLETREQKRVFARAPPGKRKVVVATNVAETSITIDDIVAVVDSGKVKET 930

Query: 512  SYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVS 571
            +YD    M  L+E W S+A+ +QR+GRAGR   G CY+LY+      +AE   PEIRRV 
Sbjct: 931  TYDAQNNMRKLEEMWASRAACKQRRGRAGRVQAGKCYKLYTRNLEMQMAERPEPEIRRVP 990

Query: 572  IDSLLLSLVCMGLGDVRKF-PFLEAPPAEN-IESSVRSLTQHGAIDSKERVTSLGRFLSD 629
            ++ + LS+  MG+ DV  F      PPA   ++ +++ L + GA+D  E +T+LG+ L+ 
Sbjct: 991  LEQMCLSVRAMGMRDVAAFLGRSPTPPASTAVDGAIKMLRRMGALDGDE-LTALGQQLAM 1049

Query: 630  LPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDP 689
            +P D+   K++V+GS+F  +D  ++++A+LS +SPF +   +    + AR   E   GD 
Sbjct: 1050 IPADLRCAKLMVYGSIFGCLDDCVTISAILSTRSPFLSPPDKRDLAKEARMRFEQGDGDL 1109

Query: 690  LTVLNAYKEWLGVKKDRVRSKK---WCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITD 745
            LT L AYKEW  +K++    ++   +C    +      +++  R QF   LG+ G+  D
Sbjct: 1110 LTDLAAYKEWDSMKRNGTPPRQLRNFCDDNFLSYLTLTDISATRQQFYGALGEMGVAFD 1168



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 83/144 (57%), Gaps = 9/144 (6%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           +W    R+   + ++++     K+   + SLP  Q  ++II TV +  V II+G+TG GK
Sbjct: 563 DWTPNPRSRDQWLKRQETPEYKKMMAKRQSLPAWQVHEKIIQTVAQNHVTIISGETGSGK 622

Query: 68  STQIPQYLVQAGFQR-------IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           STQ  Q+L+   + +       +  TQPRRI+ + L+ RVA E  S+  + +GY IR E 
Sbjct: 623 STQSVQFLLDDLYNQGLGTSANMLVTQPRRISALGLADRVAEERCSRVGDEIGYTIRGES 682

Query: 121 HRREKTKIVFITEGLLLR--QDSG 142
            R ++T+I F+T G+LLR  Q SG
Sbjct: 683 KRSQQTRITFVTTGVLLRRLQTSG 706



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 3/122 (2%)

Query: 809  RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF-PFLEAPPAE 867
            R   G CY+LY+      +AE   PEIRRV ++ + LS+  MG+ DV  F      PPA 
Sbjct: 960  RVQAGKCYKLYTRNLEMQMAERPEPEIRRVPLEQMCLSVRAMGMRDVAAFLGRSPTPPAS 1019

Query: 868  N-IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
              ++ +++ L + GA+D  E +T LG+ L+ +P D+   K++V+GS+F  +D  + +   
Sbjct: 1020 TAVDGAIKMLRRMGALDGDE-LTALGQQLAMIPADLRCAKLMVYGSIFGCLDDCVTISAI 1078

Query: 927  LN 928
            L+
Sbjct: 1079 LS 1080



 Score = 47.0 bits (110), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 1128 LVLDEIHERHLHGDFLLGVIKCLLHSTAE-VKIILMSATINIELFHTYF 1175
            +V+DE+HER L  DFLL +++ ++ +  + +K++LMSAT++   F  YF
Sbjct: 722  IVIDEVHERSLDTDFLLTIVREVMSTRKDLLKLVLMSATLDAASFENYF 770


>gi|183233848|ref|XP_649168.2| helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169801379|gb|EAL43782.2| helicase, putative [Entamoeba histolytica HM-1:IMSS]
 gi|449704411|gb|EMD44658.1| ATP-dependent RNA helicase, putative [Entamoeba histolytica KU27]
          Length = 953

 Score =  270 bits (691), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 160/433 (36%), Positives = 245/433 (56%), Gaps = 20/433 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L  Y VL+LDE HER +  D L G++K  +    E K+I+ SAT++ + F  Y
Sbjct: 397 EYLVDRDLPQYKVLILDEAHERTVGIDILFGLLKETIKRRPEFKLIITSATLDADKFSIY 456

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           FN+ A II +PGR +P++  Y    E+D  +S           +  I K +     GD+L
Sbjct: 457 FNK-APIIHIPGRTFPVEKLYLEEPEMDYIQSG----------IETIMKIHLTQPPGDIL 505

Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
            F++G  EI S    I    Q+ +++    I LP++++LS E+Q R+F  AP   RKCIV
Sbjct: 506 FFLTGQEEIDSTCSIINEKVQKLDKRYPKLIALPIYASLSTEQQKRIFEPAPPFTRKCIV 565

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETSITIDGI FVVDSG VK+  ++    M  L    IS+A A+QR GRAGRTGPG
Sbjct: 566 ATNIAETSITIDGIYFVVDSGFVKQKVHNPRLGMDQLLITPISQACADQRAGRAGRTGPG 625

Query: 546 VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            CYRLY+E+ Y + +   S PEI+R ++   +L L  +G+ +V  F +++ P    + S+
Sbjct: 626 KCYRLYTEKAYLNEMPIVSIPEIQRANLADTVLILKAIGINNVIDFDYMDPPMHNTLISA 685

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           +  L    A+D   ++T LGR +++ P++ PL KML+    F   + V+++ A LSV + 
Sbjct: 686 LHHLYAISALDDDGKLTQLGRKMAEFPLEPPLAKMLIVSEQFGCSEEVVTIVAALSVGNL 745

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F     ++ + +  +++L S+ GD LT+L  Y  W+   K    S  WCK   I  +  Y
Sbjct: 746 FIRPKEKEEEADRRKRQLSSSAGDHLTMLQVYNNWIKNGK----SPSWCKENYINFRSLY 801

Query: 725 EVTKLRSQFKQVL 737
           +   +R Q  +++
Sbjct: 802 KCEDIRKQLIKIM 814



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 86/128 (67%), Gaps = 6/128 (4%)

Query: 18  DFKQKEKFSTL---MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQY 74
           +++Q+E+ +T      I E +  LP+   + ++++++ K +++I+ G+TGCGK+TQ+ QY
Sbjct: 270 EWEQREEKATKEYKKSIEEKRKELPIYSMRNKLMESIKKNQIIILIGETGCGKTTQLTQY 329

Query: 75  LVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFI 131
           L + G+    RI CTQPRR+A IS+S+RVA E   +    VGY IRFE    EKT+I ++
Sbjct: 330 LDEDGYSKNGRIGCTQPRRVAAISVSQRVAEEMKVKLGEEVGYSIRFEDKTTEKTRIKYM 389

Query: 132 TEGLLLRQ 139
           T G+LLR+
Sbjct: 390 TNGMLLRE 397



 Score = 80.1 bits (196), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E+ Y + +   S PEI+R ++   +L L  +G+ +V  F +++ P   
Sbjct: 621 RTGPGKCYRLYTEKAYLNEMPIVSIPEIQRANLADTVLILKAIGINNVIDFDYMDPPMHN 680

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            + S++  L    A+D   ++T LGR +++ P++ PL KML+    F   + ++ +  AL
Sbjct: 681 TLISALHHLYAISALDDDGKLTQLGRKMAEFPLEPPLAKMLIVSEQFGCSEEVVTIVAAL 740

Query: 928 NFGAI 932
           + G +
Sbjct: 741 SVGNL 745



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR 1177
            D  L  Y VL+LDE HER +  D L G++K  +    E K+I+ SAT++ + F  YFN+
Sbjct: 401  DRDLPQYKVLILDEAHERTVGIDILFGLLKETIKRRPEFKLIITSATLDADKFSIYFNK 459


>gi|407043124|gb|EKE41752.1| helicase, putative [Entamoeba nuttalli P19]
          Length = 953

 Score =  270 bits (691), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 160/433 (36%), Positives = 245/433 (56%), Gaps = 20/433 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L  Y VL+LDE HER +  D L G++K  +    E K+I+ SAT++ + F  Y
Sbjct: 397 EYLVDRDLPQYKVLILDEAHERTVGIDILFGLLKETIKRRPEFKLIITSATLDADKFSIY 456

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           FN+ A II +PGR +P++  Y    E+D  +S           +  I K +     GD+L
Sbjct: 457 FNK-APIIHIPGRTFPVEKLYLEEPEMDYIQSG----------IETIMKIHLTQPPGDIL 505

Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
            F++G  EI S    I    Q+ +++    I LP++++LS E+Q R+F  AP   RKCIV
Sbjct: 506 FFLTGQEEIDSTCSIINEKVQKLDKRYPKLIALPIYASLSTEQQKRIFEPAPAFTRKCIV 565

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETSITIDGI FVVDSG VK+  ++    M  L    IS+A A+QR GRAGRTGPG
Sbjct: 566 ATNIAETSITIDGIYFVVDSGFVKQKVHNPRLGMDQLLITPISQACADQRAGRAGRTGPG 625

Query: 546 VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            CYRLY+E+ Y + +   S PEI+R ++   +L L  +G+ +V  F +++ P    + S+
Sbjct: 626 KCYRLYTEKAYLNEMPIVSIPEIQRANLADTVLILKAIGINNVIDFDYMDPPMHNTLISA 685

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           +  L    A+D   ++T LGR +++ P++ PL KML+    F   + V+++ A LSV + 
Sbjct: 686 LHHLYAISALDDDGKLTQLGRKMAEFPLEPPLSKMLIVSEQFGCSEEVVTIVAALSVGNL 745

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F     ++ + +  +++L S+ GD LT+L  Y  W+   K    S  WCK   I  +  Y
Sbjct: 746 FIRPKEKEEEADRRKRQLSSSAGDHLTMLQVYNNWIKNGK----SPSWCKENYINFRSLY 801

Query: 725 EVTKLRSQFKQVL 737
           +   +R Q  +++
Sbjct: 802 KCEDIRKQLIKIM 814



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 86/128 (67%), Gaps = 6/128 (4%)

Query: 18  DFKQKEKFST---LMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQY 74
           +++Q+E+ +T      I E +  LP+   + ++++++ K +++I+ G+TGCGK+TQ+ QY
Sbjct: 270 EWEQREEKATKEYQKSIEEKRKELPIYSMRNKLMESIKKNQIIILIGETGCGKTTQLTQY 329

Query: 75  LVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFI 131
           L + G+    RI CTQPRR+A IS+S+RVA E   +    VGY IRFE    EKT+I ++
Sbjct: 330 LYEDGYSKNGRIGCTQPRRVAAISVSQRVAEEMKVKLGEEVGYSIRFEDKTTEKTRIKYM 389

Query: 132 TEGLLLRQ 139
           T G+LLR+
Sbjct: 390 TNGMLLRE 397



 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E+ Y + +   S PEI+R ++   +L L  +G+ +V  F +++ P   
Sbjct: 621 RTGPGKCYRLYTEKAYLNEMPIVSIPEIQRANLADTVLILKAIGINNVIDFDYMDPPMHN 680

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            + S++  L    A+D   ++T LGR +++ P++ PL KML+    F   + ++ +  AL
Sbjct: 681 TLISALHHLYAISALDDDGKLTQLGRKMAEFPLEPPLSKMLIVSEQFGCSEEVVTIVAAL 740

Query: 928 NFGAI 932
           + G +
Sbjct: 741 SVGNL 745



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR 1177
            D  L  Y VL+LDE HER +  D L G++K  +    E K+I+ SAT++ + F  YFN+
Sbjct: 401  DRDLPQYKVLILDEAHERTVGIDILFGLLKETIKRRPEFKLIITSATLDADKFSIYFNK 459


>gi|300176851|emb|CBK25420.2| unnamed protein product [Blastocystis hominis]
          Length = 658

 Score =  270 bits (690), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 166/454 (36%), Positives = 252/454 (55%), Gaps = 30/454 (6%)

Query: 303 CLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN 362
           CL+    E+ +D  LS Y V++LDE HER ++ D L G+ K LL     +++++ SAT++
Sbjct: 65  CLVK---ELISDPTLSRYSVIMLDEAHERSINSDILFGLCKRLLAQRPSLRLLISSATLD 121

Query: 363 IELFHTYF-NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP 421
           I  F  ++   +A  + +PGRL+P+ + +H    L  ++ E +D    +R L  I ++ P
Sbjct: 122 ISHFQQFYPGSVA--LSIPGRLFPVAV-FHSKSALAESQDEAIDRS--LRALQQIHRREP 176

Query: 422 RTERGDVLIFMSGISEISSIVRAAQEY------NEKS-QGWIVLPLHSTLSLEEQDRVFH 474
               G VL+F+ G  EI    +  +++      N+ S    +VLPL++ L  E+Q R F 
Sbjct: 177 ----GHVLLFLPGQFEIEKAAKIVEDWYQAELRNDPSFPRLVVLPLYAALPAEQQARAFR 232

Query: 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQ 534
            A  G RK +++TNIAETS+TI GIR+V+D G  +E S+D    M +L+   IS+ +A+Q
Sbjct: 233 AASPGTRKVVIATNIAETSVTIPGIRYVIDPGFSREKSFDPRTGMDSLETTRISRGAAQQ 292

Query: 535 RKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLE 594
           R GRAGRTGPG C+RLYS  +Y+ + E + PEIRR S+ S +L L  +G+ DV  F +L+
Sbjct: 293 RAGRAGRTGPGKCFRLYSSAEYARMRESAEPEIRRASLVSTMLYLKVLGIDDVLAFEYLD 352

Query: 595 APPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLS 654
           AP  E I  +++ L   GA+D   RVT LGR LS LP+D  LGK L+        D  ++
Sbjct: 353 APAPEAISLALKQLLIVGALDDAGRVTPLGRRLSALPLDPQLGKTLLLACEEGCADEAIA 412

Query: 655 LAAVLSVQSPFTNRAFRDPDCETA------RKELESNHGDPLTVLNAYKEWLGVKKDRVR 708
           ++A+LSV+  F   A R+   E A      +K L S  GD  T LN + ++    K R  
Sbjct: 413 MSAMLSVEKVFHAIAPRERASERAQRIARRQKRLSSELGDHFTFLNVFMKF----KTRSH 468

Query: 709 SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
            + WC   G+  Q       +  Q    L   G+
Sbjct: 469 GRAWCDDHGVHYQSMRTALSIYRQLGDALRAGGM 502



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 90/167 (53%), Gaps = 6/167 (3%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RTGPG C+RLYS  +Y+ + E + PEIRR S+ S +L L  +G+ DV  F +L+AP  E 
Sbjct: 299 RTGPGKCFRLYSSAEYARMRESAEPEIRRASLVSTMLYLKVLGIDDVLAFEYLDAPAPEA 358

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVF----GSMFHQIDTMLLLD 924
           I  +++ L   GA+D   RVT LGR LS LP+D  LGK L+     G     I    +L 
Sbjct: 359 ISLALKQLLIVGALDDAGRVTPLGRRLSALPLDPQLGKTLLLACEEGCADEAIAMSAMLS 418

Query: 925 LALNFGAIDSKERVTSLGRFLSDLPVDIP--LGKMLVFGSMFHQIDT 969
           +   F AI  +ER +   + ++     +   LG    F ++F +  T
Sbjct: 419 VEKVFHAIAPRERASERAQRIARRQKRLSSELGDHFTFLNVFMKFKT 465



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 6/75 (8%)

Query: 75  LVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFI 131
           L Q GF +   +  +QPRR+A I+L++RVA E   ++   VGY IRF+      TKI +I
Sbjct: 2   LYQNGFLKEGAVVVSQPRRVAAINLARRVAEELDVEFGKEVGYTIRFDDFSDTSTKIRYI 61

Query: 132 TEGLLLRQDSGLITD 146
           T+G L+++   LI+D
Sbjct: 62  TDGCLVKE---LISD 73



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQV-QVAADNFLSSYDVL 1128
            A+N      EE + E G+      R +       + R   D   V ++ +D  LS Y V+
Sbjct: 23   AINLARRVAEELDVEFGKEVGYTIRFDDFSDTSTKIRYITDGCLVKELISDPTLSRYSVI 82

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            +LDE HER ++ D L G+ K LL     +++++ SAT++I  F  ++
Sbjct: 83   MLDEAHERSINSDILFGLCKRLLAQRPSLRLLISSATLDISHFQQFY 129


>gi|324502045|gb|ADY40902.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 [Ascaris
           suum]
          Length = 906

 Score =  270 bits (689), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 155/434 (35%), Positives = 251/434 (57%), Gaps = 22/434 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L  Y  +++DE HER L+ D L G+++ ++   A++K+I+ SAT++ E F T+
Sbjct: 321 ECLGDPDLDQYSAIIMDEAHERSLNTDVLFGLLRDVVARRADLKLIVTSATMDAEKFATF 380

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F        +PGR +P+++ +H      RT  E        + + +    +     GD+L
Sbjct: 381 FGGHTPCFTIPGRTFPVEI-FHA-----RTPMEDYVDAAVKQAVKV----HLGGSEGDIL 430

Query: 430 IFMSGISEI---SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           IFM G  +I    ++++   E  +++    VLP++S L  + Q ++FH AP G+RKCIV+
Sbjct: 431 IFMPGQEDIEVTCAMIKNQLEELDEAPPLAVLPIYSQLPSDLQAKIFHKAPGGIRKCIVA 490

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TNIAETS+T+DGI FV+D G  K   ++    M  LQ F IS+ASA QR GRAGRTGPG 
Sbjct: 491 TNIAETSLTVDGILFVIDPGYCKLKVFNPRIGMDALQVFPISQASANQRAGRAGRTGPGQ 550

Query: 547 CYRLYSEEQYS---LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           C+RLY+E Q+    L+A  + PEI+R ++ +++L L  +G+ D+ KF F++APP +N+ +
Sbjct: 551 CFRLYTERQFKEEMLVA--TVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQDNMLN 608

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
           S+  L   GA+D+  R+T LGR + + P+D  L KML+        D +L++ ++LSV +
Sbjct: 609 SMYQLWTLGALDNTGRLTDLGRKMVEFPLDPTLSKMLIVSEGMGCSDEILTIVSMLSVPA 668

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
            F     R+ D +  +++ +    D L+ LN Y +W   K     S KWC    I  +  
Sbjct: 669 IFFRPKGREEDADAKKEKFQVPESDHLSFLNVYLQWRLHK----YSMKWCNDNFIHGKAM 724

Query: 724 YEVTKLRSQFKQVL 737
            +V ++R+Q K ++
Sbjct: 725 KKVREVRAQLKDIM 738



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 85/140 (60%), Gaps = 16/140 (11%)

Query: 19  FKQKEKFSTLMK-------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGC 65
           +++ ++F+T M+             I+E +  LPV   +Q++++ +    VVII G+TG 
Sbjct: 185 YRESQQFATHMENTEAVSDFALEKSIKEQREYLPVFAVRQKMLNVIRDNSVVIIVGETGS 244

Query: 66  GKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR 122
           GK+TQ+ QYL++ G+     I CTQPRR+A +S++KRV+ E   +     GY IRFE   
Sbjct: 245 GKTTQLAQYLLEDGYGNAGMIGCTQPRRVAAMSVAKRVSEEMGVELGQECGYAIRFEDCT 304

Query: 123 REKTKIVFITEGLLLRQDSG 142
            E T++ ++T+G+LLR+  G
Sbjct: 305 SENTRLKYMTDGILLRECLG 324



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 79/128 (61%), Gaps = 5/128 (3%)

Query: 808 SRTGPGVCYRLYSEEQYS---LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 864
            RTGPG C+RLY+E Q+    L+A  + PEI+R ++ +++L L  +G+ D+ KF F++AP
Sbjct: 544 GRTGPGQCFRLYTERQFKEEMLVA--TVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAP 601

Query: 865 PAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLD 924
           P +N+ +S+  L   GA+D+  R+T LGR + + P+D  L KML+        D +L + 
Sbjct: 602 PQDNMLNSMYQLWTLGALDNTGRLTDLGRKMVEFPLDPTLSKMLIVSEGMGCSDEILTIV 661

Query: 925 LALNFGAI 932
             L+  AI
Sbjct: 662 SMLSVPAI 669



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPKQV---QVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            +E G  +   D      RLK+    +   +   D  L  Y  +++DE HER L+ D L G
Sbjct: 292  QECGYAIRFEDCTSENTRLKYMTDGILLRECLGDPDLDQYSAIIMDEAHERSLNTDVLFG 351

Query: 1146 VIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            +++ ++   A++K+I+ SAT++ E F T+F 
Sbjct: 352  LLRDVVARRADLKLIVTSATMDAEKFATFFG 382


>gi|415769694|ref|ZP_11484390.1| ATP-dependent helicase [Aggregatibacter actinomycetemcomitans
           D17P-2]
 gi|348657320|gb|EGY74914.1| ATP-dependent helicase [Aggregatibacter actinomycetemcomitans
           D17P-2]
          Length = 672

 Score =  270 bits (689), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 172/495 (34%), Positives = 268/495 (54%), Gaps = 35/495 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQTDRFLNQYACLIIDEAHERSLNNDFILGYLKQLLPRRPDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A II+V GR YP+++ Y PI E D       D      IL+ +D+      RGD+
Sbjct: 246 HFDN-APIIEVSGRTYPVEVRYRPIAEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRIKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEEDFNNRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLL 472

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K ++T +GR L+ LPVD  L KML+    F  +  V+ + + LS+
Sbjct: 473 EELGAFETVKTKFGEKRQLTQIGRQLAQLPVDPRLAKMLLSAVNFGSVYEVMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAY----KEWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN +    ++   + K++ R  + C++  
Sbjct: 533 QDPRERPTEKQQAADEKNRRFADKKSDFLAFLNLWNYLQEQQKALSKNQFR--RQCQKDF 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE
Sbjct: 591 LNYLRIREWQDIYQQIRLAVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE 645

Query: 778 EAPKRRKMLKADNAY 792
               +++ L A NA+
Sbjct: 646 ----KQQYLGARNAH 656



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 9/139 (6%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   
Sbjct: 404 GRVSEGICIRLYSEEDFNNRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKR 463

Query: 868 NIESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTM 920
           +I+  V+ L + GA ++       K ++T +GR L+ LPVD  L KML+    F  +  +
Sbjct: 464 HIQDGVKLLEELGAFETVKTKFGEKRQLTQIGRQLAQLPVDPRLAKMLLSAVNFGSVYEV 523

Query: 921 LLLDLALNFGAIDSKERVT 939
           +++  AL+    D +ER T
Sbjct: 524 MIIVSALSIQ--DPRERPT 540



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ G   F  I  TQPRRIA 
Sbjct: 82  SLPVSQRKAEIEKLLSEHQVIVVAGETGSGKTTQLPKICLELGLGNFGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  +LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAVRIAEELQTELGDLVGYKVRFNDQISDNTQIKLMTDGILL 185



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQTDRFLNQYACLIIDEAHERSLNNDFILGYLKQLLPRRPDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 246  HFDNAPIIEVSGRT 259



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++ TD FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQTDRFLNQYACLIIDEAHERSLNNDFILGYL 219


>gi|307256409|ref|ZP_07538191.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306865039|gb|EFM96940.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 1299

 Score =  270 bits (689), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 151/436 (34%), Positives = 248/436 (56%), Gaps = 16/436 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR +P+++ Y P+VE +       D      I++ +D+      RGD+
Sbjct: 249 HFNN-APIIEVSGRTFPVEVRYRPVVEEE-------DQDQLQGIINAVDELQAEG-RGDI 299

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFMSG  EI     A Q+  ++ +   +LPL++ LS  EQ R+F   P GL + I++TN
Sbjct: 300 LIFMSGEREIRDTAEALQK--QELRFTEILPLYARLSAAEQQRIFQ--PSGLNRVILATN 355

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C 
Sbjct: 356 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTSEGICI 415

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    ++  +R L
Sbjct: 416 RLYSEEDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQVQDGIRLL 475

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GAI+   ++T++GR L+ LP+D  LG+M +  +    +  V+ + + LS+Q P    
Sbjct: 476 EELGAINGN-KLTAIGRQLAQLPIDPRLGRMAISAAQNGSLHEVMMIVSALSIQDPRERP 534

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEV 726
             R    +   +       D L  +N +      +K+  ++  +K C++  +   R  E 
Sbjct: 535 QERQQAADEKHRRFADKDSDFLAFVNLWHYIQTQQKELTKNQFRKQCQKDFLNYLRVREW 594

Query: 727 TKLRSQFKQVLGDSGL 742
             +  Q +  + + GL
Sbjct: 595 QDIYHQLRLAVREMGL 610



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 78/129 (60%), Gaps = 3/129 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    
Sbjct: 408 RTSEGICIRLYSEEDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQ 467

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           ++  +R L + GAI+   ++T +GR L+ LP+D  LG+M +  +    +  ++++  AL+
Sbjct: 468 VQDGIRLLEELGAINGN-KLTAIGRQLAQLPIDPRLGRMAISAAQNGSLHEVMMIVSALS 526

Query: 929 FGAIDSKER 937
               D +ER
Sbjct: 527 IQ--DPRER 533



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRR 90
           T   LPV+  ++EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRR
Sbjct: 82  TYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRR 141

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  S++ R+A E  S+    VGY++RF     E T +  +T+G+LL
Sbjct: 142 LAARSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILL 188



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 249  HFNNAPIIEVSGRT 262



 Score = 45.1 bits (105), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++  D +L+ YD LI+DE HER L  DF+LG +   LH
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILH 227


>gi|307260839|ref|ZP_07542525.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869406|gb|EFN01197.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 1299

 Score =  270 bits (689), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 151/436 (34%), Positives = 248/436 (56%), Gaps = 16/436 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR +P+++ Y P+VE +       D      I++ +D+      RGD+
Sbjct: 249 HFNN-APIIEVSGRTFPVEVRYRPVVEEE-------DQDQLQGIINAVDELQAEG-RGDI 299

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFMSG  EI     A Q+  ++ +   +LPL++ LS  EQ R+F   P GL + I++TN
Sbjct: 300 LIFMSGEREIRDTAEALQK--QELRFTEILPLYARLSAAEQQRIFQ--PSGLNRVILATN 355

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C 
Sbjct: 356 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTSEGICI 415

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    ++  +R L
Sbjct: 416 RLYSEEDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQVQDGIRLL 475

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GAI+   ++T++GR L+ LP+D  LG+M +  +    +  V+ + + LS+Q P    
Sbjct: 476 EELGAINGN-KLTTIGRQLAQLPIDPRLGRMAISAAQNGSLHEVMMIVSALSIQDPRERP 534

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEV 726
             R    +   +       D L  +N +      +K+  ++  +K C++  +   R  E 
Sbjct: 535 QERQQAADEKHRRFADKDSDFLAFVNLWHYIQTQQKELTKNQFRKQCQKDFLNYLRVREW 594

Query: 727 TKLRSQFKQVLGDSGL 742
             +  Q +  + + GL
Sbjct: 595 QDIYHQLRLAVREMGL 610



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 79/129 (61%), Gaps = 3/129 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    
Sbjct: 408 RTSEGICIRLYSEEDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQ 467

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           ++  +R L + GAI+   ++TT+GR L+ LP+D  LG+M +  +    +  ++++  AL+
Sbjct: 468 VQDGIRLLEELGAINGN-KLTTIGRQLAQLPIDPRLGRMAISAAQNGSLHEVMMIVSALS 526

Query: 929 FGAIDSKER 937
               D +ER
Sbjct: 527 IQ--DPRER 533



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRR 90
           T   LPV+  ++EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRR
Sbjct: 82  TYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRR 141

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  S++ R+A E  S+    VGY++RF     E T +  +T+G+LL
Sbjct: 142 LAARSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILL 188



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 249  HFNNAPIIEVSGRT 262



 Score = 45.1 bits (105), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++  D +L+ YD LI+DE HER L  DF+LG +   LH
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILH 227


>gi|385331604|ref|YP_005885555.1| RNA helicase, ATP-dependent DEAH box, HrpA type [Marinobacter
           adhaerens HP15]
 gi|311694754|gb|ADP97627.1| RNA helicase, ATP-dependent DEAH box, HrpA type [Marinobacter
           adhaerens HP15]
          Length = 1311

 Score =  269 bits (688), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 169/487 (34%), Positives = 270/487 (55%), Gaps = 22/487 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            EV  D FL  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI +E F  
Sbjct: 189 AEVQHDRFLDRYDTIIIDEAHERSLNIDFLLGYLRQLLPKRPDLKVIITSATIEVERFSE 248

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIV--ELDRTKSEKLDPGPYIRILSIIDK--KYPRTE 424
           +F++ A +I+V GR YP+ + Y P+   E DR      D G    +L  +D+  ++ R++
Sbjct: 249 FFDK-APVIEVSGRTYPVDVRYRPLTGDEDDR------DQGWTDGVLGALDEIEQHERSQ 301

Query: 425 R---GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR 481
           +   GD+L+F+ G  EI ++ +  +  + +     VLPL+S LS  EQ+RVF  + +G R
Sbjct: 302 KQPPGDILVFLPGEREIRNLSKVLRHVDLRHTE--VLPLYSRLSNAEQNRVFQ-SHKG-R 357

Query: 482 KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
           + ++STN+AETS+T+ GIR+V+D+G  +   Y V +K+  L    IS+ASA QR GR GR
Sbjct: 358 RIVLSTNVAETSLTVPGIRYVIDTGVARISRYSVRSKIQRLPVEPISQASANQRAGRCGR 417

Query: 542 TGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENI 601
             PG+C+RLY E  +    EY+ PEI R ++ S++L +   GLG++R+FPFLEAP    +
Sbjct: 418 VAPGICFRLYDETDFINRPEYTDPEILRTNLASVILQMATSGLGEIRQFPFLEAPDKRQV 477

Query: 602 ESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
               + L + GA+D K RVT LGR ++ LP+D  L +MLV  +    +   L + A LS+
Sbjct: 478 NDGYKLLEELGAVDDKRRVTRLGRTMARLPLDPRLARMLVTAAELGSLSETLVIIAGLSI 537

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    + A         D LT+LN +  +   +++  ++  KK C++  + 
Sbjct: 538 QDPRERPQDKQQAADQAHAPFNDKESDFLTLLNVWNFYEEQRQELSQNQLKKVCQKSFLS 597

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q   +  +  L  +     AS  +  +A+  G +  +     KK   A
Sbjct: 598 WMRMREWRDIHRQLTLICREQKLAVNKDA--ASYEALHKAILAGLLGQVAVKVEKKEYLA 655

Query: 780 PKRRKML 786
            + RK+L
Sbjct: 656 TRNRKVL 662



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PG+C+RLY E  +    EY+ PEI R ++ S++L +   GLG++R+FPFLEAP   
Sbjct: 416 GRVAPGICFRLYDETDFINRPEYTDPEILRTNLASVILQMATSGLGEIRQFPFLEAPDKR 475

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GA+D K RVT LGR ++ LP+D  L +MLV  +    +   L++   L
Sbjct: 476 QVNDGYKLLEELGAVDDKRRVTRLGRTMARLPLDPRLARMLVTAAELGSLSETLVIIAGL 535

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 536 SIQ--DPRER 543



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIAC 93
            LPV++   +I + +   +VVIIAG+TG GK+TQIP+  + +G      I  TQPRRIA 
Sbjct: 85  GLPVSERVDDIREAIENHQVVIIAGETGSGKTTQIPKICMNSGRGIRGLIGHTQPRRIAA 144

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E   Q    +GYQ+RF  +  E++++  +T+G+LL
Sbjct: 145 RSVAARIAEEIGEQIGQQIGYQVRFTDNTSEQSRVKVMTDGILL 188



 Score = 67.0 bits (162), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +V  D FL  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI +E F  
Sbjct: 189  AEVQHDRFLDRYDTIIIDEAHERSLNIDFLLGYLRQLLPKRPDLKVIITSATIEVERFSE 248

Query: 1174 YFNRIAKDLLSGST 1187
            +F++     +SG T
Sbjct: 249  FFDKAPVIEVSGRT 262



 Score = 41.2 bits (95), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            +V  D FL  YD +I+DE HER L  DFLLG +
Sbjct: 189 AEVQHDRFLDRYDTIIIDEAHERSLNIDFLLGYL 222


>gi|261868231|ref|YP_003256153.1| ATP-dependent RNA helicase HrpA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|444345716|ref|ZP_21153722.1| ATP-dependent helicase [Aggregatibacter actinomycetemcomitans
           serotype c str. AAS4A]
 gi|261413563|gb|ACX82934.1| ATP-dependent helicase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|443542449|gb|ELT52774.1| ATP-dependent helicase [Aggregatibacter actinomycetemcomitans
           serotype c str. AAS4A]
          Length = 1303

 Score =  269 bits (688), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 172/495 (34%), Positives = 268/495 (54%), Gaps = 35/495 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQTDRFLNQYACLIIDEAHERSLNNDFILGYLKQLLPRRPDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A II+V GR YP+++ Y PI E D       D      IL+ +D+      RGD+
Sbjct: 246 HFDN-APIIEVSGRTYPVEVRYRPIAEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRIKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEEDFNNRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLL 472

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K ++T +GR L+ LPVD  L KML+    F  +  V+ + + LS+
Sbjct: 473 EELGAFETVKTKFGEKRQLTQIGRQLAQLPVDPRLAKMLLSAVNFGSVYEVMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAY----KEWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN +    ++   + K++ R +  C++  
Sbjct: 533 QDPRERPTEKQQAADEKNRRFADKKSDFLAFLNLWNYLQEQQKALSKNQFRRQ--CQKDF 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE
Sbjct: 591 LNYLRIREWQDIYQQIRLAVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE 645

Query: 778 EAPKRRKMLKADNAY 792
               +++ L A NA+
Sbjct: 646 ----KQQYLGARNAH 656



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 9/139 (6%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   
Sbjct: 404 GRVSEGICIRLYSEEDFNNRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKR 463

Query: 868 NIESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTM 920
           +I+  V+ L + GA ++       K ++T +GR L+ LPVD  L KML+    F  +  +
Sbjct: 464 HIQDGVKLLEELGAFETVKTKFGEKRQLTQIGRQLAQLPVDPRLAKMLLSAVNFGSVYEV 523

Query: 921 LLLDLALNFGAIDSKERVT 939
           +++  AL+    D +ER T
Sbjct: 524 MIIVSALSIQ--DPRERPT 540



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ G   F  I  TQPRRIA 
Sbjct: 82  SLPVSQRKAEIEKLLSEHQVIVVAGETGSGKTTQLPKICLELGLGNFGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  +LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAVRIAEELQTELGDLVGYKVRFNDQISDNTQIKLMTDGILL 185



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQTDRFLNQYACLIIDEAHERSLNNDFILGYLKQLLPRRPDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 246  HFDNAPIIEVSGRT 259



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++ TD FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQTDRFLNQYACLIIDEAHERSLNNDFILGYL 219


>gi|120554512|ref|YP_958863.1| ATP-dependent helicase HrpA [Marinobacter aquaeolei VT8]
 gi|120324361|gb|ABM18676.1| ATP-dependent helicase HrpA [Marinobacter aquaeolei VT8]
          Length = 1312

 Score =  269 bits (688), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 165/435 (37%), Positives = 245/435 (56%), Gaps = 22/435 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            EV  D FL  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI +E F  
Sbjct: 190 AEVQHDRFLDRYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIEVERFSE 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIV--ELDRTKSEKLDPGPYIRILSIIDK--KYPRTE 424
           +FN  A +I+V GR +P+ + Y P+V  E DR      D G    +LS +D+  ++ R E
Sbjct: 250 FFNE-APVIEVSGRTFPVDIRYRPLVGDEDDR------DQGWTDGVLSALDEIEQHERQE 302

Query: 425 R---GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR 481
           +   GDVL+F+ G  EI ++ +  +  + +     VLPL+S LS +EQ+RVF    +G R
Sbjct: 303 KQPPGDVLVFLPGEREIRALSKVLRHADLRHTE--VLPLYSRLSNQEQNRVFQ-GHKG-R 358

Query: 482 KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
           + ++STN+AETS+T+ GIR+V+D+G  +   Y V +K+  L    IS+ASA QR GR GR
Sbjct: 359 RIVLSTNVAETSLTVPGIRYVIDTGVARISRYSVRSKIQRLPIEPISQASANQRAGRCGR 418

Query: 542 TGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENI 601
             PG+C+RLY E  +    EY+ PEI R ++ S++L +   GLG++R FPFLEAP    +
Sbjct: 419 VAPGICFRLYDETDFLNRPEYTDPEILRTNLASVILQMATSGLGEIRHFPFLEAPDRRQV 478

Query: 602 ESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
               + L +  A+D K RVT LGR ++ LP+D  L +MLV  +    +  VL + A LSV
Sbjct: 479 NDGYKLLEELSAVDDKRRVTRLGRTMARLPLDPRLARMLVTSAEQGSLAEVLIVIAGLSV 538

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGI 718
           Q P      +    + A         D  T+LN +  W   ++  +     KK C++  +
Sbjct: 539 QDPRERPQDKQQAADQAHAPFNDKESDFATLLNIWN-WFEEQRQELSQNQLKKLCQKTFL 597

Query: 719 EEQRFYEVTKLRSQF 733
              R  E   +  Q 
Sbjct: 598 SWMRMREWRDIHRQL 612



 Score = 97.1 bits (240), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PG+C+RLY E  +    EY+ PEI R ++ S++L +   GLG++R FPFLEAP   
Sbjct: 417 GRVAPGICFRLYDETDFLNRPEYTDPEILRTNLASVILQMATSGLGEIRHFPFLEAPDRR 476

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L +  A+D K RVT LGR ++ LP+D  L +MLV  +    +  +L++   L
Sbjct: 477 QVNDGYKLLEELSAVDDKRRVTRLGRTMARLPLDPRLARMLVTSAEQGSLAEVLIVIAGL 536

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 537 SVQ--DPRER 544



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
            LPV+   ++I D +   +VVIIAG+TG GK+TQIP+  +  G      I  TQPRRIA 
Sbjct: 86  GLPVSDRVEDISDAINNHQVVIIAGETGSGKTTQIPKICLNLGRGIRGIIGHTQPRRIAA 145

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S+S R+A E        +GYQ+RF  +  E +++  +T+G+LL
Sbjct: 146 RSVSSRIAEELGETVGQQIGYQVRFTDNTSESSRVKVMTDGILL 189



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +V  D FL  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI +E F  
Sbjct: 190  AEVQHDRFLDRYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIEVERFSE 249

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 250  FFNEAPVIEVSGRT 263



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            +V  D FL  YD LI+DE HER L  DFLLG +
Sbjct: 190 AEVQHDRFLDRYDTLIIDEAHERSLNIDFLLGYL 223


>gi|387814109|ref|YP_005429592.1| ATP-dependent helicase [Marinobacter hydrocarbonoclasticus ATCC
           49840]
 gi|381339122|emb|CCG95169.1| ATP-dependent helicase [Marinobacter hydrocarbonoclasticus ATCC
           49840]
          Length = 1306

 Score =  269 bits (688), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 165/435 (37%), Positives = 245/435 (56%), Gaps = 22/435 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            EV  D FL  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI +E F  
Sbjct: 184 AEVQHDRFLDRYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIEVERFSE 243

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIV--ELDRTKSEKLDPGPYIRILSIIDK--KYPRTE 424
           +FN  A +I+V GR +P+ + Y P+V  E DR      D G    +LS +D+  ++ R E
Sbjct: 244 FFNE-APVIEVSGRTFPVDIRYRPLVGDEDDR------DQGWTDGVLSALDEIEQHERQE 296

Query: 425 R---GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR 481
           +   GDVL+F+ G  EI ++ +  +  + +     VLPL+S LS +EQ+RVF    +G R
Sbjct: 297 KQPPGDVLVFLPGEREIRALSKVLRHADLRHTE--VLPLYSRLSNQEQNRVFQ-GHKG-R 352

Query: 482 KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
           + ++STN+AETS+T+ GIR+V+D+G  +   Y V +K+  L    IS+ASA QR GR GR
Sbjct: 353 RIVLSTNVAETSLTVPGIRYVIDTGVARISRYSVRSKIQRLPIEPISQASANQRAGRCGR 412

Query: 542 TGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENI 601
             PG+C+RLY E  +    EY+ PEI R ++ S++L +   GLG++R FPFLEAP    +
Sbjct: 413 VAPGICFRLYDETDFFNRPEYTDPEILRTNLASVILQMATSGLGEIRHFPFLEAPDRRQV 472

Query: 602 ESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
               + L +  A+D K RVT LGR ++ LP+D  L +MLV  +    +  VL + A LSV
Sbjct: 473 NDGYKLLEELSAVDDKRRVTRLGRTMARLPLDPRLARMLVTSAEQGSLAEVLIVIAGLSV 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGI 718
           Q P      +    + A         D  T+LN +  W   ++  +     KK C++  +
Sbjct: 533 QDPRERPQDKQQAADQAHAPFNDKESDFATLLNIWN-WFEEQRQELSQNQLKKLCQKTFL 591

Query: 719 EEQRFYEVTKLRSQF 733
              R  E   +  Q 
Sbjct: 592 SWMRMREWRDIHRQL 606



 Score = 97.1 bits (240), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PG+C+RLY E  +    EY+ PEI R ++ S++L +   GLG++R FPFLEAP   
Sbjct: 411 GRVAPGICFRLYDETDFFNRPEYTDPEILRTNLASVILQMATSGLGEIRHFPFLEAPDRR 470

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L +  A+D K RVT LGR ++ LP+D  L +MLV  +    +  +L++   L
Sbjct: 471 QVNDGYKLLEELSAVDDKRRVTRLGRTMARLPLDPRLARMLVTSAEQGSLAEVLIVIAGL 530

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 531 SVQ--DPRER 538



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIAC 93
            LPV+   ++I D +   +VVIIAG+TG GK+TQIP+  +  G      I  TQPRRIA 
Sbjct: 80  GLPVSDRVEDISDAIKNHQVVIIAGETGSGKTTQIPKICLNLGRGIRGLIGHTQPRRIAA 139

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S+S R+A E        VGYQ+RF  +  E +++  +T+G+LL
Sbjct: 140 RSVSSRIAEELGETVGQQVGYQVRFTDNTSESSRVKVMTDGILL 183



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +V  D FL  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI +E F  
Sbjct: 184  AEVQHDRFLDRYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIEVERFSE 243

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 244  FFNEAPVIEVSGRT 257



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            +V  D FL  YD LI+DE HER L  DFLLG +
Sbjct: 184 AEVQHDRFLDRYDTLIIDEAHERSLNIDFLLGYL 217


>gi|197334395|ref|YP_002156312.1| ATP-dependent RNA helicase HrpA [Vibrio fischeri MJ11]
 gi|197315885|gb|ACH65332.1| ATP-dependent helicase HrpA [Vibrio fischeri MJ11]
          Length = 1298

 Score =  269 bits (688), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 156/438 (35%), Positives = 254/438 (57%), Gaps = 21/438 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF++G ++ LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQNDRYLNQYDTLIIDEAHERSLNIDFIMGYLRELLPKRPDLKVIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A +I+V GR YP++  Y PIVE  D T  ++L+ G +  +  + ++       GD
Sbjct: 240 HFNN-APMIEVSGRTYPVETRYRPIVEDGDDTDRDQLE-GIFDAVDELCEEGL-----GD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A ++ N +     ++PL++ LS +EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMTGEREIRDTAEALEKRNLRDTE--IVPLYARLSAQEQNRVFQ--PHAGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEAISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  ++ 
Sbjct: 409 IRLYSEEDFISRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDNRNIQDGIKL 468

Query: 608 LTQHGAIDS-----KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI+S     K+ +T +GR L+ LP+D  L +M++    ++ +  V+ +AA LS+Q
Sbjct: 469 LEELGAINSNAKDPKKSLTKVGRELARLPIDPRLARMVLEAPKYNALQEVMIIAAALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   K       D LT +N + E +  K+  + S   +K C++  + 
Sbjct: 529 DPRERPSDKKQQSDDKHKRFNHEDSDFLTFVNVW-EHVKAKQKELSSNQFRKQCRKDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVL 737
             R  E   +  Q  QV+
Sbjct: 588 YLRVREWQDVHYQLSQVM 605



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 83/135 (61%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEEDFISRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDNR 460

Query: 868 NIESSVRSLTQHGAIDS-----KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  ++ L + GAI+S     K+ +T +GR L+ LP+D  L +M++    ++ +  +++
Sbjct: 461 NIQDGIKLLEELGAINSNAKDPKKSLTKVGRELARLPIDPRLARMVLEAPKYNALQEVMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 IAAALSIQ--DPRER 533



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
            LPV+Q K EI + +   +VVI+AG+TG GK+TQ+P+  ++ G   F  I  TQPRR+A 
Sbjct: 76  QLPVSQKKDEIAEAIKNNQVVIVAGETGSGKTTQLPKICLELGRGKFGNIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  + VGY++RF     ++T++  +T+G+LL
Sbjct: 136 RSVADRIAEEMETELGSHVGYKVRFNDQVSDRTQVKLMTDGILL 179



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF++G ++ LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQNDRYLNQYDTLIIDEAHERSLNIDFIMGYLRELLPKRPDLKVIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPMIEVSGRT 253



 Score = 40.0 bits (92), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D +L+ YD LI+DE HER L  DF++G +
Sbjct: 180 AEIQNDRYLNQYDTLIIDEAHERSLNIDFIMGYL 213


>gi|417845981|ref|ZP_12491996.1| ATP-dependent RNA helicase hrpA [Haemophilus haemolyticus M21639]
 gi|341953688|gb|EGT80190.1| ATP-dependent RNA helicase hrpA [Haemophilus haemolyticus M21639]
          Length = 1303

 Score =  269 bits (687), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 170/493 (34%), Positives = 268/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS++EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSVQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K ++T+ GR L+ LPVD  L KML+       +  ++ + A LS+
Sbjct: 473 EELGAFEMVRTKSGEKRQLTAAGRQLAQLPVDPRLAKMLLSAVSQGALHEIMIIVAALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIE 719
           Q P      +    +   +       D L  LN ++     +K+  +++  + C++  + 
Sbjct: 533 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKELSKNQFHRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGAHNAH 656



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKAEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA +        K ++T  GR L+ LPVD  L KML+       +  ++
Sbjct: 465 IQDGIKLLEELGAFEMVRTKSGEKRQLTAAGRQLAQLPVDPRLAKMLLSAVSQGALHEIM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVAALSIQ--DPRER 538



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|290992428|ref|XP_002678836.1| DEXH box helicase [Naegleria gruberi]
 gi|284092450|gb|EFC46092.1| DEXH box helicase [Naegleria gruberi]
          Length = 601

 Score =  269 bits (687), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 165/460 (35%), Positives = 256/460 (55%), Gaps = 14/460 (3%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L  Y V+VLDE HER LH D L GV+K LL    ++K+I+MSAT+  + F  +
Sbjct: 37  ESQIDPLLKKYSVIVLDEAHERTLHTDVLFGVVKRLLKERDDLKVIIMSATLEAQSFSKF 96

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTER-GDV 428
           ++  AKI+ V GR +P+ + Y      ++  S+ +D          +D++ P  E  GD+
Sbjct: 97  YDN-AKILYVSGRQFPVDIYY-----TEQPTSDYVDAAITTTFQIHLDEQSPTGESLGDI 150

Query: 429 LIFMSGISEISSIVR----AAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           L+F++G  EI  + +     A+    ++   +V P+ S+L  E+Q  VF  AP G RK I
Sbjct: 151 LVFLTGQEEIEQVAKLLEQKAKMLPPEALKLMVCPIFSSLPSEKQMEVFEPAPSGCRKVI 210

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TNIAETSITI+GIRFV+D+G VK  +++    M +L    ISKASA QR GRAGR   
Sbjct: 211 LATNIAETSITINGIRFVIDTGFVKSKAFNPLNGMESLVLTPISKASARQRSGRAGRESS 270

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G C+RLY+EE Y  L  ++ PEI R ++ +++L L  MG+  V KF F++ PP E+++ S
Sbjct: 271 GKCFRLYTEEAYHSLDNFTIPEILRCNLSTVVLQLKSMGIEKVHKFDFMDKPPKESLKKS 330

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           + +L   GA+D +  +T LG  ++  P++      L+  + F     +L + ++LSV+S 
Sbjct: 331 LETLYNLGALDERGNLTELGVKMAGFPLEPMFAVSLLRSTEFGCTKEILDIVSMLSVESI 390

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS-KKWCKRRGIEEQRF 723
           F     +  +    + +  S  GD LT+LNA++E+  VKK      KKWC    I  +  
Sbjct: 391 FYAPYHKREEANKIKMKFASKTGDQLTLLNAFREFNLVKKSAKEDIKKWCFDHYINYKSM 450

Query: 724 YEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHG 763
            +V  +R Q +  L +  L  +I      L+   +AL  G
Sbjct: 451 TKVLDVRKQLRDYLMN--LNYEISSCGKDLAMVRKALCSG 488



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 4/127 (3%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G C+RLY+EE Y  L  ++ PEI R ++ +++L L  MG+  V KF F++ PP E+
Sbjct: 267 RESSGKCFRLYTEEAYHSLDNFTIPEILRCNLSTVVLQLKSMGIEKVHKFDFMDKPPKES 326

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVD----IPLGKMLVFGSMFHQIDTMLLLD 924
           ++ S+ +L   GA+D +  +T LG  ++  P++    + L +   FG     +D + +L 
Sbjct: 327 LKKSLETLYNLGALDERGNLTELGVKMAGFPLEPMFAVSLLRSTEFGCTKEILDIVSMLS 386

Query: 925 LALNFGA 931
           +   F A
Sbjct: 387 VESIFYA 393



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  L  Y V+VLDE HER LH D L GV+K LL    ++K+I+MSAT+  + F  +++  
Sbjct: 41   DPLLKKYSVIVLDEAHERTLHTDVLFGVVKRLLKERDDLKVIIMSATLEAQSFSKFYDNA 100

Query: 1179 AKDLLSG 1185
                +SG
Sbjct: 101  KILYVSG 107


>gi|343518102|ref|ZP_08755097.1| putative ATP-dependent helicase HrpA [Haemophilus pittmaniae HK 85]
 gi|343394087|gb|EGV06636.1| putative ATP-dependent helicase HrpA [Haemophilus pittmaniae HK 85]
          Length = 933

 Score =  269 bits (687), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 171/493 (34%), Positives = 269/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEDD-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEDDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K ++T++GR LS LPVD  L KML+       +  V+ + A LS+
Sbjct: 473 EELGAFETVRTKAGEKRQLTAVGRQLSQLPVDPRLAKMLLSAVSQGALHEVMIIVAALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN ++     +K+  ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKELSKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKAEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAVRIAEELETELGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEDDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA ++       K ++T +GR LS LPVD  L KML+       +  ++
Sbjct: 465 IQDGIKLLEELGAFETVRTKAGEKRQLTAVGRQLSQLPVDPRLAKMLLSAVSQGALHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVAALSIQ--DPRER 538



 Score = 66.6 bits (161), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 41.2 bits (95), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|59712107|ref|YP_204883.1| ATP-dependent RNA helicase HrpA [Vibrio fischeri ES114]
 gi|59480208|gb|AAW85995.1| ATP-dependent helicase HrpA [Vibrio fischeri ES114]
          Length = 1279

 Score =  269 bits (687), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 156/438 (35%), Positives = 254/438 (57%), Gaps = 21/438 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF++G ++ LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQNDRYLNQYDTLIIDEAHERSLNIDFIMGYLRELLPKRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A +I+V GR YP++  Y PIVE  D T  ++L+ G +  +  + ++       GD
Sbjct: 221 HFNN-APMIEVSGRTYPVETRYRPIVEDGDDTDRDQLE-GIFDAVDELCEEGL-----GD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A ++ N +     ++PL++ LS +EQ+RVF   P   R+ +++T
Sbjct: 274 ILIFMTGEREIRDTAEALEKRNLRDTE--IVPLYARLSAQEQNRVFQ--PHAGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEAISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  ++ 
Sbjct: 390 IRLYSEEDFISRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDNRNIQDGIKL 449

Query: 608 LTQHGAIDS-----KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI+S     K+ +T +GR L+ LP+D  L +M++    ++ +  V+ +AA LS+Q
Sbjct: 450 LEELGAINSNAKDPKKSLTKVGRELARLPIDPRLARMVLEAPKYNALQEVMIIAAALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   K       D LT +N + E +  K+  + S   +K C++  + 
Sbjct: 510 DPRERPSDKKQQSDDKHKRFNHEDSDFLTFVNVW-EHVKAKQKELSSNQFRKQCRKDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVL 737
             R  E   +  Q  QV+
Sbjct: 569 YLRVREWQDVHYQLSQVM 586



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 83/135 (61%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEEDFISRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDNR 441

Query: 868 NIESSVRSLTQHGAIDS-----KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  ++ L + GAI+S     K+ +T +GR L+ LP+D  L +M++    ++ +  +++
Sbjct: 442 NIQDGIKLLEELGAINSNAKDPKKSLTKVGRELARLPIDPRLARMVLEAPKYNALQEVMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 IAAALSIQ--DPRER 514



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
            LPV+Q K EI + +   +VVI+AG+TG GK+TQ+P+  ++ G   F  I  TQPRR+A 
Sbjct: 57  QLPVSQKKDEIAEAIKNNQVVIVAGETGSGKTTQLPKICLELGRGKFGNIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  + VGY++RF     ++T++  +T+G+LL
Sbjct: 117 RSVADRIAEEMETELGSHVGYKVRFNDQVSDRTQVKLMTDGILL 160



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF++G ++ LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQNDRYLNQYDTLIIDEAHERSLNIDFIMGYLRELLPKRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPMIEVSGRT 234



 Score = 40.0 bits (92), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D +L+ YD LI+DE HER L  DF++G +
Sbjct: 161 AEIQNDRYLNQYDTLIIDEAHERSLNIDFIMGYL 194


>gi|423686266|ref|ZP_17661074.1| ATP-dependent RNA helicase HrpA [Vibrio fischeri SR5]
 gi|371494334|gb|EHN69932.1| ATP-dependent RNA helicase HrpA [Vibrio fischeri SR5]
          Length = 1279

 Score =  268 bits (686), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 156/438 (35%), Positives = 254/438 (57%), Gaps = 21/438 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF++G ++ LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQNDRYLNQYDTLIIDEAHERSLNIDFIMGYLRELLPKRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A +I+V GR YP++  Y PIVE  D T  ++L+ G +  +  + ++       GD
Sbjct: 221 HFNN-APMIEVSGRTYPVETRYRPIVEDGDDTDRDQLE-GIFDAVDELCEEGL-----GD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A ++ N +     ++PL++ LS +EQ+RVF   P   R+ +++T
Sbjct: 274 ILIFMTGEREIRDTAEALEKRNLRDTE--IVPLYARLSAQEQNRVFQ--PHAGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEAISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  ++ 
Sbjct: 390 IRLYSEEDFISRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDNRNIQDGIKL 449

Query: 608 LTQHGAIDS-----KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI+S     K+ +T +GR L+ LP+D  L +M++    ++ +  V+ +AA LS+Q
Sbjct: 450 LEELGAINSNAKDPKKSLTKVGRELARLPIDPRLARMVLEAPKYNALQEVMIIAAALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   K       D LT +N + E +  K+  + S   +K C++  + 
Sbjct: 510 DPRERPSDKKQQSDDKHKRFNHEDSDFLTFVNVW-EHVKAKQKELSSNQFRKQCRKDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVL 737
             R  E   +  Q  QV+
Sbjct: 569 YLRVREWQDVHYQLSQVM 586



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 83/135 (61%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEEDFISRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDNR 441

Query: 868 NIESSVRSLTQHGAIDS-----KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  ++ L + GAI+S     K+ +T +GR L+ LP+D  L +M++    ++ +  +++
Sbjct: 442 NIQDGIKLLEELGAINSNAKDPKKSLTKVGRELARLPIDPRLARMVLEAPKYNALQEVMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 IAAALSIQ--DPRER 514



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
            LPV+Q K EI + +   +VVI+AG+TG GK+TQ+P+  ++ G   F  I  TQPRR+A 
Sbjct: 57  QLPVSQKKDEIAEAIKNNQVVIVAGETGSGKTTQLPKICLELGRGKFGNIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  + VGY++RF     ++T++  +T+G+LL
Sbjct: 117 RSVADRIAEEMETELGSHVGYKVRFNDQVSDRTQVKLMTDGILL 160



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF++G ++ LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQNDRYLNQYDTLIIDEAHERSLNIDFIMGYLRELLPKRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPMIEVSGRT 234



 Score = 40.0 bits (92), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D +L+ YD LI+DE HER L  DF++G +
Sbjct: 161 AEIQNDRYLNQYDTLIIDEAHERSLNIDFIMGYL 194


>gi|303252608|ref|ZP_07338771.1| ATP-dependent RNA helicase HrpA [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302648576|gb|EFL78769.1| ATP-dependent RNA helicase HrpA [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 1299

 Score =  268 bits (686), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 150/436 (34%), Positives = 247/436 (56%), Gaps = 16/436 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR +P+++ Y P+VE +       D      I++ +D+      RGD+
Sbjct: 249 HFNN-APIIEVSGRTFPVEVRYRPVVEEE-------DQDQLQGIINAVDELQAEG-RGDI 299

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFMSG  EI     A Q+  ++ +   +LPL++ LS  EQ R+F   P GL + I++TN
Sbjct: 300 LIFMSGEREIRDTAEALQK--QELRFTEILPLYARLSAAEQQRIFQ--PSGLNRVILATN 355

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C 
Sbjct: 356 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTSEGICI 415

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    ++  +R L
Sbjct: 416 RLYSEENFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQVQDGIRLL 475

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GAI+   ++T++GR  + LP+D  LG+M +  +    +  V+ + + LS+Q P    
Sbjct: 476 EELGAINGN-KLTAIGRQFAQLPIDPRLGRMAISAAQNGSLHEVMMIVSALSIQDPRERP 534

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEV 726
             R    +   +       D L  +N +      +K+  ++  +K C++  +   R  E 
Sbjct: 535 QERQQAADEKHRRFADKDSDFLAFVNLWHYIQTQQKELTKNQFRKQCQKDFLNYLRVREW 594

Query: 727 TKLRSQFKQVLGDSGL 742
             +  Q +  + + GL
Sbjct: 595 QDIYHQLRLAVREMGL 610



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 77/129 (59%), Gaps = 3/129 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    
Sbjct: 408 RTSEGICIRLYSEENFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQ 467

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           ++  +R L + GAI+   ++T +GR  + LP+D  LG+M +  +    +  ++++  AL+
Sbjct: 468 VQDGIRLLEELGAINGN-KLTAIGRQFAQLPIDPRLGRMAISAAQNGSLHEVMMIVSALS 526

Query: 929 FGAIDSKER 937
               D +ER
Sbjct: 527 IQ--DPRER 533



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRR 90
           T   LPV+  ++EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRR
Sbjct: 82  TYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRR 141

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  S++ R+A E  S+    VGY++RF     E T +  +T+G+LL
Sbjct: 142 LAARSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILL 188



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 249  HFNNAPIIEVSGRT 262



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++  D +L+ YD LI+DE HER L  DF+LG +   LH
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILH 227


>gi|319897449|ref|YP_004135646.1| ATP-dependent helicase [Haemophilus influenzae F3031]
 gi|317432955|emb|CBY81322.1| ATP-dependent helicase [Haemophilus influenzae F3031]
          Length = 1303

 Score =  268 bits (686), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 169/493 (34%), Positives = 268/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+  I++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K ++T +GR L+ LPVD  L KM++    F  +  ++ + + LS+
Sbjct: 473 EELGAFEMVRTKSGEKRQLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +  D +   +       D L  LN ++     +K+  ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQDSDEKHRRFADKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA +        K ++T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 465 IQDGIKLLEELGAFEMVRTKSGEKRQLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + + +++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLLSEHQAIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|190575545|ref|YP_001973390.1| ATP-dependent RNA helicase HrpA [Stenotrophomonas maltophilia
           K279a]
 gi|190013467|emb|CAQ47102.1| putative ATP-dependent RNA helicase HrpA [Stenotrophomonas
           maltophilia K279a]
          Length = 1361

 Score =  268 bits (685), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 157/431 (36%), Positives = 245/431 (56%), Gaps = 16/431 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYI---RILSIIDKKYPRTER 425
           +F+  A +I V GR YP+++ Y  +      + E  D G       I+S ID+      R
Sbjct: 240 HFDN-APVISVEGRTYPVEVRYRAL------EGEGEDQGERTVNDAIVSAIDEITRLDAR 292

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GDVLIF+ G  EI    ++ +    K +   VLPL++ LS ++QDRVF+  P   R+ ++
Sbjct: 293 GDVLIFLPGEREIRDAHQSLE--RRKYRNTEVLPLYARLSNQDQDRVFNPGPN--RRIVL 348

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QRKGR GR   G
Sbjct: 349 ATNVAETSLTVPRIRYVVDPGFARVKRYSPRNKLDRLHIEPISQASANQRKGRCGRIAEG 408

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG + +FPFLEAP    +    
Sbjct: 409 ICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEEFPFLEAPDERAVADGW 468

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
           + LT+ GAID++ R+T++G+ ++ LPVD+ L +MLV       +  +L +A+ L +Q P 
Sbjct: 469 QQLTELGAIDAERRMTTIGKQMARLPVDVKLARMLVAAQAAGCLRPMLVIASFLGIQDPR 528

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRF 723
                     ++A  +      + + VL  +  +    +D  +SK   WC R  +   R 
Sbjct: 529 ERPPEARGAADSAHAQFADGRSEFVGVLRLWDAYRQAHEDLTQSKLRDWCGRHFLGFLRM 588

Query: 724 YEVTKLRSQFK 734
            E  +L  Q +
Sbjct: 589 REWRELHRQLR 599



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 80/130 (61%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG + +FPFLEAP   
Sbjct: 403 GRIAEGICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEEFPFLEAPDER 462

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + LT+ GAID++ R+TT+G+ ++ LPVD+ L +MLV       +  ML+  +A 
Sbjct: 463 AVADGWQQLTELGAIDAERRMTTIGKQMARLPVDVKLARMLVAAQAAGCLRPMLV--IAS 520

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 521 FLGIQDPRER 530



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 69/103 (66%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LP+A+    II  + + +VV+IAG+TG GK+TQ+P+  + AG  +   I CTQPRRIA  
Sbjct: 77  LPIAREADAIIGLIREHQVVVIAGETGSGKTTQLPKLCLAAGRGQAGMIGCTQPRRIAAR 136

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ RVA E  S+   LVGYQ+RF     E ++I F+T+G+LL
Sbjct: 137 AVASRVAQELQSELGQLVGYQVRFNDKVSEDSRIKFMTDGILL 179



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 44.7 bits (104), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LS+YD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYL 213


>gi|386719612|ref|YP_006185938.1| ATP dependent RNA helicase [Stenotrophomonas maltophilia D457]
 gi|384079174|emb|CCH13772.1| ATP dependent RNA helicase [Stenotrophomonas maltophilia D457]
          Length = 1360

 Score =  268 bits (685), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 157/431 (36%), Positives = 245/431 (56%), Gaps = 16/431 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYI---RILSIIDKKYPRTER 425
           +F+  A +I V GR YP+++ Y  +      + E  D G       I+S ID+      R
Sbjct: 240 HFDN-APVISVEGRTYPVEVRYRAL------EGEGEDQGERTVNDAIVSAIDEITRLDAR 292

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GDVLIF+ G  EI    ++ +    K +   VLPL++ LS ++QDRVF+  P   R+ ++
Sbjct: 293 GDVLIFLPGEREIRDAHQSLE--RRKYRNTEVLPLYARLSNQDQDRVFNPGPN--RRIVL 348

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QRKGR GR   G
Sbjct: 349 ATNVAETSLTVPRIRYVVDPGFARVKRYSPRNKLDRLHIEPISQASANQRKGRCGRIAEG 408

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG + +FPFLEAP    +    
Sbjct: 409 ICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEEFPFLEAPDERAVADGW 468

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
           + LT+ GAID++ R+T++G+ ++ LPVD+ L +MLV       +  +L +A+ L +Q P 
Sbjct: 469 QQLTELGAIDAERRMTTIGKQMARLPVDVKLARMLVAAQAAGCLRPMLVIASFLGIQDPR 528

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRF 723
                     ++A  +      + + VL  +  +    +D  +SK   WC R  +   R 
Sbjct: 529 ERPPEARGAADSAHAQFADGRSEFVGVLRLWDAYRQAHEDLTQSKLRDWCGRHFLGFLRM 588

Query: 724 YEVTKLRSQFK 734
            E  +L  Q +
Sbjct: 589 REWRELHRQLR 599



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 80/130 (61%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG + +FPFLEAP   
Sbjct: 403 GRIAEGICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEEFPFLEAPDER 462

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + LT+ GAID++ R+TT+G+ ++ LPVD+ L +MLV       +  ML+  +A 
Sbjct: 463 AVADGWQQLTELGAIDAERRMTTIGKQMARLPVDVKLARMLVAAQAAGCLRPMLV--IAS 520

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 521 FLGIQDPRER 530



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 68/103 (66%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LP+A+    II  +   +VV+IAG+TG GK+TQ+P+  + AG  +   I CTQPRRIA  
Sbjct: 77  LPIAREADAIIGLIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGQAGMIGCTQPRRIAAR 136

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ RVA E  S+   LVGYQ+RF     + ++I F+T+G+LL
Sbjct: 137 AVASRVAQELQSELGQLVGYQVRFNDKVSDDSRIKFMTDGILL 179



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 44.7 bits (104), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LS+YD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYL 213


>gi|456734353|gb|EMF59169.1| ATP dependent RNA helicase [Stenotrophomonas maltophilia EPM1]
          Length = 1361

 Score =  268 bits (685), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 157/431 (36%), Positives = 245/431 (56%), Gaps = 16/431 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYI---RILSIIDKKYPRTER 425
           +F+  A +I V GR YP+++ Y  +      + E  D G       I+S ID+      R
Sbjct: 240 HFDN-APVISVEGRTYPVEVRYRAL------EGEGEDQGERTVNDAIVSAIDEITRLDAR 292

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GDVLIF+ G  EI    ++ +    K +   VLPL++ LS ++QDRVF+  P   R+ ++
Sbjct: 293 GDVLIFLPGEREIRDAHQSLE--RRKYRNTEVLPLYARLSNQDQDRVFNPGPN--RRIVL 348

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QRKGR GR   G
Sbjct: 349 ATNVAETSLTVPRIRYVVDPGFARVKRYSPRNKLDRLHIEPISQASANQRKGRCGRIAEG 408

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG + +FPFLEAP    +    
Sbjct: 409 ICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEEFPFLEAPDERAVADGW 468

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
           + LT+ GAID++ R+T++G+ ++ LPVD+ L +MLV       +  +L +A+ L +Q P 
Sbjct: 469 QQLTELGAIDAERRMTTIGKQMARLPVDVKLARMLVAAQAAGCLRPMLVIASFLGIQDPR 528

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRF 723
                     ++A  +      + + VL  +  +    +D  +SK   WC R  +   R 
Sbjct: 529 ERPPEARGAADSAHAQFADGRSEFVGVLRLWDAYRQAHEDLTQSKLRDWCGRHFLGFLRM 588

Query: 724 YEVTKLRSQFK 734
            E  +L  Q +
Sbjct: 589 REWRELHRQLR 599



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 80/130 (61%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG + +FPFLEAP   
Sbjct: 403 GRIAEGICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEEFPFLEAPDER 462

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + LT+ GAID++ R+TT+G+ ++ LPVD+ L +MLV       +  ML+  +A 
Sbjct: 463 AVADGWQQLTELGAIDAERRMTTIGKQMARLPVDVKLARMLVAAQAAGCLRPMLV--IAS 520

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 521 FLGIQDPRER 530



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 69/103 (66%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LP+A+    II  + + +VV+IAG+TG GK+TQ+P+  + AG  +   I CTQPRRIA  
Sbjct: 77  LPIAREADAIIGLIREHQVVVIAGETGSGKTTQLPKLCLAAGRGQAGMIGCTQPRRIAAR 136

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ RVA E  S+   LVGYQ+RF     E ++I F+T+G+LL
Sbjct: 137 AVASRVAQELQSELGQLVGYQVRFNDKVSEDSRIKFMTDGILL 179



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 44.7 bits (104), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LS+YD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYL 213


>gi|344208532|ref|YP_004793673.1| ATP-dependent helicase HrpA [Stenotrophomonas maltophilia JV3]
 gi|343779894|gb|AEM52447.1| ATP-dependent helicase HrpA [Stenotrophomonas maltophilia JV3]
          Length = 1360

 Score =  268 bits (685), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 157/431 (36%), Positives = 245/431 (56%), Gaps = 16/431 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYI---RILSIIDKKYPRTER 425
           +F+  A +I V GR YP+++ Y  +      + E  D G       I+S ID+      R
Sbjct: 240 HFDN-APVISVEGRTYPVEVRYRAL------EGEGEDQGERTVNDAIVSAIDEITRLDAR 292

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GDVLIF+ G  EI    ++ +    K +   VLPL++ LS ++QDRVF+  P   R+ ++
Sbjct: 293 GDVLIFLPGEREIRDAHQSLE--RRKYRNTEVLPLYARLSNQDQDRVFNPGPN--RRIVL 348

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QRKGR GR   G
Sbjct: 349 ATNVAETSLTVPRIRYVVDPGFARVKRYSPRNKLDRLHIEPISQASANQRKGRCGRIAEG 408

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG + +FPFLEAP    +    
Sbjct: 409 ICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEEFPFLEAPDERAVADGW 468

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
           + LT+ GAID++ R+T++G+ ++ LPVD+ L +MLV       +  +L +A+ L +Q P 
Sbjct: 469 QQLTELGAIDAERRMTTIGKQMARLPVDVKLARMLVAAQAAGCLRPMLVIASFLGIQDPR 528

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRF 723
                     ++A  +      + + VL  +  +    +D  +SK   WC R  +   R 
Sbjct: 529 ERPPEARGAADSAHAQFADGRSEFVGVLRLWDAYRQAHEDLTQSKLRDWCGRHFLGFLRM 588

Query: 724 YEVTKLRSQFK 734
            E  +L  Q +
Sbjct: 589 REWRELHRQLR 599



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 80/130 (61%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG + +FPFLEAP   
Sbjct: 403 GRIAEGICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEEFPFLEAPDER 462

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + LT+ GAID++ R+TT+G+ ++ LPVD+ L +MLV       +  ML+  +A 
Sbjct: 463 AVADGWQQLTELGAIDAERRMTTIGKQMARLPVDVKLARMLVAAQAAGCLRPMLV--IAS 520

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 521 FLGIQDPRER 530



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 68/103 (66%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LP+A+    II  +   +VV+IAG+TG GK+TQ+P+  + AG  +   I CTQPRRIA  
Sbjct: 77  LPIAREADAIIGLIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGQAGMIGCTQPRRIAAR 136

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ RVA E  S+   LVGYQ+RF     E ++I F+T+G+LL
Sbjct: 137 AVASRVAQELQSELGQLVGYQVRFNDKVSEDSRIKFMTDGILL 179



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 44.7 bits (104), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LS+YD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYL 213


>gi|145636480|ref|ZP_01792148.1| hypothetical protein CGSHiHH_08382 [Haemophilus influenzae PittHH]
 gi|145270305|gb|EDK10240.1| hypothetical protein CGSHiHH_08382 [Haemophilus influenzae PittHH]
          Length = 1305

 Score =  268 bits (685), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 172/495 (34%), Positives = 267/495 (53%), Gaps = 35/495 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K ++T+ GR L+ LPVD  L KML+       +  V+ + A LS+
Sbjct: 473 EELGAFEMVRTKAGEKRQLTAAGRQLAQLPVDPRLAKMLLSAVSQGALHEVMIIVAALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYK----EWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN ++    +   + K++ R +  C++  
Sbjct: 533 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKALSKNQFRRQ--CQKDF 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE
Sbjct: 591 LNYLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE 645

Query: 778 EAPKRRKMLKADNAY 792
               +++ L A NA+
Sbjct: 646 ----KQQYLGARNAH 656



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  +LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELQTELGDLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA +        K ++T  GR L+ LPVD  L KML+       +  ++
Sbjct: 465 IQDGIKLLEELGAFEMVRTKAGEKRQLTAAGRQLAQLPVDPRLAKMLLSAVSQGALHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVAALSIQ--DPRER 538



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|307247362|ref|ZP_07529410.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306856206|gb|EFM88361.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 1108

 Score =  268 bits (685), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 150/436 (34%), Positives = 245/436 (56%), Gaps = 16/436 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR +P+++ Y P+VE +       D      I++ +D+      RGD+
Sbjct: 249 HFNN-APIIEVSGRTFPVEVRYRPVVEEE-------DQDQLQGIINAVDELQAEG-RGDI 299

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFMSG  EI     A Q+   +     +LPL++ LS  EQ R+F   P GL + I++TN
Sbjct: 300 LIFMSGEREIRDTAEALQKQELRFTE--ILPLYARLSAAEQQRIFQ--PSGLNRVILATN 355

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C 
Sbjct: 356 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTSEGICI 415

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    ++  +R L
Sbjct: 416 RLYSEENFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQVQDGIRLL 475

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GAI+   ++T++GR  + LP+D  LG+M +  +    +  V+ + + LS+Q P    
Sbjct: 476 EELGAINGN-KLTAIGRQFAQLPIDPRLGRMAISAAQNGSLHEVMMIVSALSIQDPRERP 534

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEV 726
             R    +   +       D L  +N +      +K+  ++  +K C++  +   R  E 
Sbjct: 535 QERQQAADEKHRRFADKDSDFLAFVNLWHYIQTQQKELTKNQFRKQCQKDFLNYLRVREW 594

Query: 727 TKLRSQFKQVLGDSGL 742
             +  Q +  + + GL
Sbjct: 595 QDIYHQLRLAVREMGL 610



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 89/168 (52%), Gaps = 15/168 (8%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    
Sbjct: 408 RTSEGICIRLYSEENFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQ 467

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           ++  +R L + GAI+   ++T +GR  + LP+D  LG+M +  +    +  ++++  AL+
Sbjct: 468 VQDGIRLLEELGAINGN-KLTAIGRQFAQLPIDPRLGRMAISAAQNGSLHEVMMIVSALS 526

Query: 929 FGAIDSKER-------VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDT 969
               D +ER            R  +D   D      L F +++H I T
Sbjct: 527 IQ--DPRERPQERQQAADEKHRRFADKDSD-----FLAFVNLWHYIQT 567



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRR 90
           T   LPV+  ++EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRR
Sbjct: 82  TYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRR 141

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  S++ R+A E  S+    VGY++RF     E T +  +T+G+LL
Sbjct: 142 LAARSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILL 188



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 249  HFNNAPIIEVSGRT 262



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++  D +L+ YD LI+DE HER L  DF+LG +   LH
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILH 227


>gi|329124195|ref|ZP_08252742.1| ATP-dependent helicase HrpA [Haemophilus aegyptius ATCC 11116]
 gi|327467620|gb|EGF13118.1| ATP-dependent helicase HrpA [Haemophilus aegyptius ATCC 11116]
          Length = 1303

 Score =  268 bits (684), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 169/493 (34%), Positives = 268/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D    + IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLLGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P  L + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSSLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+  I++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLL 472

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  ++ + + LS+
Sbjct: 473 EELGAFETVQTKSGEKRLLTRVGRQLTQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +  D +   +       D L  LN ++     +K+  ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQDSDEKHRRFADKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  V+ L + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 465 IQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLTQLPVDPRLAKMILSAVNFGCVYEMM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|345429906|ref|YP_004823025.1| ATP-dependent helicase [Haemophilus parainfluenzae T3T1]
 gi|301155968|emb|CBW15438.1| ATP-dependent helicase [Haemophilus parainfluenzae T3T1]
          Length = 1280

 Score =  268 bits (684), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 170/493 (34%), Positives = 268/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 162 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 221

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 222 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 272

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 273 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 328

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 329 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 388

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 389 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 448

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K ++T++GR L+ LPVD  L KML+       +  V+ + A LS+
Sbjct: 449 EELGAFEMVRTKAGEKRQLTAVGRQLAQLPVDPRLAKMLLTAVSQGALHEVMIIVAALSI 508

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN ++     +K+  ++  ++ C++  + 
Sbjct: 509 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKELSKNQFRRQCQKDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K++E  
Sbjct: 569 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKESE-- 621

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 622 --KQQYLGARNAH 632



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 58  SLPVSQRKAEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 117

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 118 RSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMTDGILL 161



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 9/137 (6%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   
Sbjct: 380 GRVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKR 439

Query: 868 NIESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTM 920
           +I+  ++ L + GA +        K ++T +GR L+ LPVD  L KML+       +  +
Sbjct: 440 HIQDGIKLLEELGAFEMVRTKAGEKRQLTAVGRQLAQLPVDPRLAKMLLTAVSQGALHEV 499

Query: 921 LLLDLALNFGAIDSKER 937
           +++  AL+    D +ER
Sbjct: 500 MIIVAALSIQ--DPRER 514



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 162  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 221

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 222  HFNNAPIIEVSGRT 235



 Score = 40.8 bits (94), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 162 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 195


>gi|342905151|ref|ZP_08726942.1| ATP-dependent RNA helicase hrpA [Haemophilus haemolyticus M21621]
 gi|341951838|gb|EGT78391.1| ATP-dependent RNA helicase hrpA [Haemophilus haemolyticus M21621]
          Length = 1303

 Score =  268 bits (684), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 171/493 (34%), Positives = 267/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+ +D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQSDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTTEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K ++T+ G  LS LPVD  L KML+       +  V+ + A LS+
Sbjct: 473 EELGAFEMVRTKAGEKRQLTTTGSQLSQLPVDPRLAKMLLSAVSQGALHEVMIIVAALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN ++     +K+  ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQASDEKHRRFTDKKSDFLAFLNLWRYLQEQQKELSKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++ G+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKAEIQKLLSEHQVIVVTGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA +        K ++TT G  LS LPVD  L KML+       +  ++
Sbjct: 465 IQDGIKLLEELGAFEMVRTKAGEKRQLTTTGSQLSQLPVDPRLAKMLLSAVSQGALHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVAALSIQ--DPRER 538



 Score = 67.0 bits (162), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++ +D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQSDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 41.2 bits (95), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++ +D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQSDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|319776676|ref|YP_004139164.1| ATP-dependent helicase [Haemophilus influenzae F3047]
 gi|317451267|emb|CBY87501.1| ATP-dependent helicase [Haemophilus influenzae F3047]
          Length = 1303

 Score =  268 bits (684), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 169/493 (34%), Positives = 268/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D    + IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLLGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P  L + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSSLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+  I++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLL 472

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  ++ + + LS+
Sbjct: 473 EELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +  D +   +       D L  LN ++     +K+  ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQDSDEKHRRFADKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  V+ L + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 465 IQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|145518808|ref|XP_001445276.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412720|emb|CAK77879.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1059

 Score =  268 bits (684), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 156/441 (35%), Positives = 255/441 (57%), Gaps = 28/441 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L  Y  +++DE HER L+ D L G++K +     +++I++ SAT+N + F  +
Sbjct: 421 ESLQDPDLEKYSAVIMDEAHERSLNTDVLFGILKKVAQRRRDIRIVITSATMNAKKFSDF 480

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKK---YPRTERG 426
           F  +  I K+PGR +P+ + +           EK     Y+R  S I K    + +   G
Sbjct: 481 FGGVP-IYKIPGRTFPVDVRF-----------EKAPAQDYVR--SAIKKTIEVHIQQPPG 526

Query: 427 DVLIFMSGISEISSIVRA-AQEYNEKSQG---WIVLPLHSTLSLEEQDRVFHYAPEGLRK 482
           DVLIFM+G  +I +     A+E N+ S+     ++LP++S L  EEQ R+F  +    RK
Sbjct: 527 DVLIFMTGQEDIETTCYLLAEELNKLSEATPPLLILPIYSQLRSEEQARIFEKSE--FRK 584

Query: 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542
           CIV+TNIAETS+T+DG+++V+D+G  K   Y+    M  LQ   IS+A+A+QRKGRAGRT
Sbjct: 585 CIVATNIAETSLTLDGVKYVIDTGYCKMKVYNPRIGMDALQVTPISQANADQRKGRAGRT 644

Query: 543 GPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENI 601
           GPG+C+RLYS   Y   + E + PEI+R ++ +++L L  + + ++  F F++ PP + I
Sbjct: 645 GPGICFRLYSSLNYRQDMLENNIPEIQRTNLANVVLLLKSLNINNLLDFDFMDPPPQDTI 704

Query: 602 ESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +++  L   GA+D+   +T LGR +S+ P+D PL KML+ G      + +L++ ++LSV
Sbjct: 705 LNAMYQLWVLGALDNVGELTELGRKMSEFPLDPPLSKMLIKGDQLGCTEEILTVVSMLSV 764

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQ 721
              F     R+ + + AR++L     D LT+LN +++W    K    S +WC    ++ +
Sbjct: 765 PGIFYRPKDREAESDAAREKLFVGESDHLTMLNVFEQW----KRHEFSPEWCNEHFVQAK 820

Query: 722 RFYEVTKLRSQFKQVLGDSGL 742
              +V ++R+Q K + G  GL
Sbjct: 821 SMRKVREVRAQLKDIAGKLGL 841



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 75/118 (63%), Gaps = 3/118 (2%)

Query: 25  FSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR-- 82
           F+    I+E +  LPV   + E++  +   RV II G+TG GK+TQ+ QYL + G+    
Sbjct: 304 FARNKTIKEQREYLPVFHCRSELVQLLHDNRVCIIVGETGSGKTTQLTQYLYEEGYTNTG 363

Query: 83  -IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            I CTQPRR+A +S++KRVA E   +  + VGY IRFE +  + T I ++T+G+LLR+
Sbjct: 364 VIGCTQPRRVAAVSVAKRVAEEMGVELGSKVGYAIRFEDYTSKDTVIKYMTDGVLLRE 421



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 71/116 (61%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG+C+RLYS   Y   + E + PEI+R ++ +++L L  + + ++  F F++ PP +
Sbjct: 643 RTGPGICFRLYSSLNYRQDMLENNIPEIQRTNLANVVLLLKSLNINNLLDFDFMDPPPQD 702

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            I +++  L   GA+D+   +T LGR +S+ P+D PL KML+ G      + +L +
Sbjct: 703 TILNAMYQLWVLGALDNVGELTELGRKMSEFPLDPPLSKMLIKGDQLGCTEEILTV 758



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  L  Y  +++DE HER L+ D L G++K +     +++I++ SAT+N + F  +F  +
Sbjct: 425  DPDLEKYSAVIMDEAHERSLNTDVLFGILKKVAQRRRDIRIVITSATMNAKKFSDFFGGV 484

Query: 1179 AKDLLSGST 1187
                + G T
Sbjct: 485  PIYKIPGRT 493


>gi|170591817|ref|XP_001900666.1| Probable pre-mRNA splicing factor ATP-dependent RNA helicase mog-1
           [Brugia malayi]
 gi|158591818|gb|EDP30421.1| Probable pre-mRNA splicing factor ATP-dependent RNA helicase mog-1,
           putative [Brugia malayi]
          Length = 1133

 Score =  267 bits (683), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 251/435 (57%), Gaps = 24/435 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E  +D  L  Y  +++DE HER L+ D L G+++ ++   A++K+I+ SAT++ E F  +
Sbjct: 545 ECLSDPDLDQYSAIIMDEAHERSLNTDVLFGLLRDVMAHRADLKLIVTSATMDAEKFANF 604

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRI-LSIIDKKYPRTERGDV 428
           F        +PGR +P+++ +H    ++      +     +R+ L   D        GD+
Sbjct: 605 FGGHTPCFTIPGRTFPVEI-FHARTPMEDYVDAAVKQA--VRVHLGGTD--------GDI 653

Query: 429 LIFMSGISEI---SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           LIFM G  +I     +++   E  +++    VLP++S L  + Q ++F  AP G+RKCIV
Sbjct: 654 LIFMPGQEDIEVTCGMIKNQLEELDEAPPLAVLPIYSQLPSDLQAKIFQKAPGGIRKCIV 713

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETS+T+DGI FV+D G  K   ++    M  LQ F IS+ASA QR GRAGRTGPG
Sbjct: 714 ATNIAETSLTVDGILFVIDPGYCKLKVFNPRIGMDALQVFPISQASANQRSGRAGRTGPG 773

Query: 546 VCYRLYSEEQYS---LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
            C+RLY+E Q+    L+A  + PEI+R ++ +++L L  +G+ D+ KF F++APP +N+ 
Sbjct: 774 QCFRLYTERQFKEEMLVA--TXPEIQRTNLANVVLLLKSLGIDDLLKFHFMDAPPQDNML 831

Query: 603 SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           +S+  L   GA+D+  R+T LGR + + P+D  L KML+     H  D VL++ ++LSV 
Sbjct: 832 NSMYQLWTLGALDNIGRLTDLGRKMVEFPLDPTLSKMLIVSEGMHCSDEVLTVVSMLSVP 891

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
           + F     R+ D +  +++ +    D LT LN Y +W   K     S KWC    I  + 
Sbjct: 892 AIFFRPKGREEDADAKKEKFQVPESDHLTFLNVYLQWRLHK----YSTKWCNDNFIHTKA 947

Query: 723 FYEVTKLRSQFKQVL 737
             +V ++R+Q K ++
Sbjct: 948 MKKVREVRAQLKDIM 962



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%)

Query: 25  FSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR-- 82
           F+    I+E +  LPV   +Q+++  +    VVII G+TG GK+TQ+ QYL++ G+    
Sbjct: 428 FALKKSIKEQREYLPVFAVRQKMLSVIADNSVVIIVGETGSGKTTQLAQYLLEDGYANFG 487

Query: 83  -IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            I CTQPRR+A +S++KRVA E         GY IRFE    E T+I ++T+G+LLR+
Sbjct: 488 LIGCTQPRRVAAMSVAKRVAEEMGVDLGQECGYAIRFEDCTSENTRIKYMTDGILLRE 545



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 80/127 (62%), Gaps = 5/127 (3%)

Query: 809 RTGPGVCYRLYSEEQYS---LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 865
           RTGPG C+RLY+E Q+    L+A  + PEI+R ++ +++L L  +G+ D+ KF F++APP
Sbjct: 769 RTGPGQCFRLYTERQFKEEMLVA--TXPEIQRTNLANVVLLLKSLGIDDLLKFHFMDAPP 826

Query: 866 AENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
            +N+ +S+  L   GA+D+  R+T LGR + + P+D  L KML+     H  D +L +  
Sbjct: 827 QDNMLNSMYQLWTLGALDNIGRLTDLGRKMVEFPLDPTLSKMLIVSEGMHCSDEVLTVVS 886

Query: 926 ALNFGAI 932
            L+  AI
Sbjct: 887 MLSVPAI 893



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 38/58 (65%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            +D  L  Y  +++DE HER L+ D L G+++ ++   A++K+I+ SAT++ E F  +F
Sbjct: 548  SDPDLDQYSAIIMDEAHERSLNTDVLFGLLRDVMAHRADLKLIVTSATMDAEKFANFF 605


>gi|350564771|ref|ZP_08933587.1| ATP-dependent helicase HrpA [Thioalkalimicrobium aerophilum AL3]
 gi|349777473|gb|EGZ31837.1| ATP-dependent helicase HrpA [Thioalkalimicrobium aerophilum AL3]
          Length = 1311

 Score =  267 bits (683), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 166/475 (34%), Positives = 262/475 (55%), Gaps = 21/475 (4%)

Query: 276 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHG 335
           L  Y V   D++HE  L      G++        E+  D FLS YD +++DE HER ++ 
Sbjct: 152 LVGYQVRFHDQVHETSLIKVMTDGIL------LAEIQNDRFLSQYDTIIIDEAHERSVNI 205

Query: 336 DFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN---RIAKIIKVPGRLYPIQLEYHP 392
           DFLLG++K LL    ++K+I+ SATI+   F  +F    R   I++V GR YP+++ Y P
Sbjct: 206 DFLLGILKQLLPKRPDLKVIITSATIDTARFAEHFKQPGRAVPIVEVSGRTYPVEVRYRP 265

Query: 393 IVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKS 452
           + +++      ++      I+  +D+       GDVL+F  G  +I     A ++ N K+
Sbjct: 266 LGQVEMDDGTVIEQDLTDGIIEALDELATHDPFGDVLVFQIGERDIKETAEALRKQNLKN 325

Query: 453 QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMS 512
               V+PL++ LS+ EQ++VF  + +  R+ I+STN+AETS+T+ GIR+V+D G V+   
Sbjct: 326 TE--VIPLYARLSMSEQNKVFQTSNK--RRIILSTNVAETSLTVPGIRYVIDPGLVRISR 381

Query: 513 YDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSI 572
           Y V +K+  L    IS+ASA QRKGR GR   G+C RLYSEE ++   E++ PEI R S+
Sbjct: 382 YSVRSKVQRLPVEKISQASANQRKGRCGRVADGICIRLYSEEDFNARPEFTDPEIHRTSL 441

Query: 573 DSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPV 632
            S+LL++  + LG V+ FPF+E P  + +    R L + GA+D K+++T  GR L+ LP+
Sbjct: 442 SSVLLNMAQLKLGKVQNFPFIEPPEEKAVNDGYRQLIEIGALDDKKQLTDAGRDLARLPL 501

Query: 633 DIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETAR---KELESNHGDP 689
           +  + KM++     + +  VL +AA +S+Q P   R   +   + AR   K+ E    D 
Sbjct: 502 EPRIAKMVLEAEKNNVLAEVLIIAAAISIQDP---RDINEQTMQAARTKHKQWEDPRSDF 558

Query: 690 LTVLNAYK--EWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
           L  LN ++  E+      + + +K CK   +   R  E   L  Q K  L   GL
Sbjct: 559 LFFLNLWRFYEYQARHLSQNKLRKLCKTNYLSYLRLREWHDLFHQLKVSLKSIGL 613



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
           +LPV   + E++D +   +VV+IAG+TG GK+TQ+P+  ++AG     RI CTQPRR+A 
Sbjct: 75  ALPVVGRRDELLDLIKNHQVVVIAGETGSGKTTQLPKLCLEAGRGVMGRIGCTQPRRLAA 134

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S+++R+A E  S    LVGYQ+RF     E + I  +T+G+LL
Sbjct: 135 RSVAERLAEELGSSLGELVGYQVRFHDQVHETSLIKVMTDGILL 178



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 74/122 (60%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE ++   E++ PEI R S+ S+LL++  + LG V+ FPF+E P  +
Sbjct: 409 GRVADGICIRLYSEEDFNARPEFTDPEIHRTSLSSVLLNMAQLKLGKVQNFPFIEPPEEK 468

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    R L + GA+D K+++T  GR L+ LP++  + KM++     + +  +L++  A+
Sbjct: 469 AVNDGYRQLIEIGALDDKKQLTDAGRDLARLPLEPRIAKMVLEAEKNNVLAEVLIIAAAI 528

Query: 928 NF 929
           + 
Sbjct: 529 SI 530



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 43/64 (67%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FLS YD +++DE HER ++ DFLLG++K LL    ++K+I+ SATI+   F  
Sbjct: 179  AEIQNDRFLSQYDTIIIDEAHERSVNIDFLLGILKQLLPKRPDLKVIITSATIDTARFAE 238

Query: 1174 YFNR 1177
            +F +
Sbjct: 239  HFKQ 242



 Score = 43.1 bits (100), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FLS YD +I+DE HER +  DFLLG++
Sbjct: 179 AEIQNDRFLSQYDTIIIDEAHERSVNIDFLLGIL 212


>gi|424669855|ref|ZP_18106880.1| ATP-dependent helicase HrpA [Stenotrophomonas maltophilia Ab55555]
 gi|401071926|gb|EJP80437.1| ATP-dependent helicase HrpA [Stenotrophomonas maltophilia Ab55555]
          Length = 1361

 Score =  267 bits (683), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 157/431 (36%), Positives = 244/431 (56%), Gaps = 16/431 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYI---RILSIIDKKYPRTER 425
           +F+  A +I V GR YP+++ Y  +      + E  D G       I+S ID+      R
Sbjct: 240 HFDN-APVISVEGRTYPVEVRYRAL------EGEGEDQGERTVNDAIVSAIDEITRLDAR 292

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GDVLIF+ G  EI    ++ +    K +   VLPL++ LS ++QDRVF+  P   R+ ++
Sbjct: 293 GDVLIFLPGEREIRDAHQSLE--RRKYRNTEVLPLYARLSNQDQDRVFNPGPN--RRIVL 348

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QRKGR GR   G
Sbjct: 349 ATNVAETSLTVPRIRYVVDPGFARVKRYSPRNKLDRLHIEPISQASANQRKGRCGRIAEG 408

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG +  FPFLEAP    +    
Sbjct: 409 ICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEDFPFLEAPDERAVADGW 468

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
           + LT+ GAID++ R+T++G+ ++ LPVD+ L +MLV       +  +L +A+ L +Q P 
Sbjct: 469 QQLTELGAIDAERRMTTIGKQMARLPVDMKLARMLVAAQAAGCLRPMLVIASFLGIQDPR 528

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRF 723
                     ++A  +      + + VL  +  +    +D  +SK   WC R  +   R 
Sbjct: 529 ERPPEARGAADSAHAQFADGRSEFVGVLRLWDAYRQAHEDLTQSKLRDWCGRHFLGFLRM 588

Query: 724 YEVTKLRSQFK 734
            E  +L  Q +
Sbjct: 589 REWRELHRQLR 599



 Score =  103 bits (256), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 79/130 (60%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 403 GRIAEGICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEDFPFLEAPDER 462

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + LT+ GAID++ R+TT+G+ ++ LPVD+ L +MLV       +  ML+  +A 
Sbjct: 463 AVADGWQQLTELGAIDAERRMTTIGKQMARLPVDMKLARMLVAAQAAGCLRPMLV--IAS 520

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 521 FLGIQDPRER 530



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 69/103 (66%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LP+A+    II  + + +VV+IAG+TG GK+TQ+P+  + AG  +   I CTQPRRIA  
Sbjct: 77  LPIAREADAIIGLIREHQVVVIAGETGSGKTTQLPKLCLAAGRGQAGMIGCTQPRRIAAR 136

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ RVA E  S+   LVGYQ+RF     E ++I F+T+G+LL
Sbjct: 137 AVASRVAQELQSELGQLVGYQVRFNDKVSEDSRIKFMTDGILL 179



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 44.7 bits (104), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LS+YD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYL 213


>gi|402594399|gb|EJW88325.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, partial
           [Wuchereria bancrofti]
          Length = 1089

 Score =  267 bits (683), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 156/434 (35%), Positives = 250/434 (57%), Gaps = 22/434 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E  +D  L  Y  +++DE HER L+ D L G+++ ++   A++K+I+ SAT++ E F  +
Sbjct: 546 ECLSDPDLDQYSAIIMDEAHERSLNTDVLFGLLRDVMAHRADLKLIVTSATMDAEKFANF 605

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F        +PGR +P+++ +H      RT  E        + + +    +     GD+L
Sbjct: 606 FGGHTPCFTIPGRTFPVEI-FHA-----RTPMEDYVDAAVKQAVRV----HLGGTDGDIL 655

Query: 430 IFMSGISEI---SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           IFM G  +I     +++   E  +++    VLP++S L  + Q ++F  AP G+RKCIV+
Sbjct: 656 IFMPGQEDIEVTCGMIKNQLEELDEAPPLAVLPIYSQLPSDLQAKIFQKAPGGIRKCIVA 715

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TNIAETS+T+DGI FV+D G  K   ++    M  LQ F IS+ASA QR GRAGRTGPG 
Sbjct: 716 TNIAETSLTVDGILFVIDPGYCKLKVFNPRIGMDALQVFPISQASANQRSGRAGRTGPGQ 775

Query: 547 CYRLYSEEQYS---LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           C+RLY+E Q+    L+A  + PEI+R ++ +++L L  +G+ D+ KF F++APP +N+ +
Sbjct: 776 CFRLYTERQFKEEMLIA--TVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQDNMLN 833

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
           S+  L   GA+D+  R+T LGR + + P+D  L KML+     H  D VL++ ++LSV +
Sbjct: 834 SMYQLWTLGALDNIGRLTDLGRKMVEFPLDPTLSKMLIVSEGMHCSDEVLTVVSMLSVPA 893

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
            F     R+ D +  +++ +    D LT LN Y +W   K     S KWC    I  +  
Sbjct: 894 IFFRPKGREEDADAKKEKFQVPESDHLTFLNVYLQWRLHK----YSTKWCNDNFIHTKAM 949

Query: 724 YEVTKLRSQFKQVL 737
            +V ++R+Q K ++
Sbjct: 950 KKVREVRAQLKDIM 963



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 75/118 (63%), Gaps = 3/118 (2%)

Query: 25  FSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR-- 82
           F+    I+E +  LPV   +Q+++  +    VVII G+TG GK+TQ+ QYL++ G+    
Sbjct: 429 FALKKSIKEQREYLPVFAVRQKMLSVIADNSVVIIVGETGSGKTTQLAQYLLEDGYANFG 488

Query: 83  -IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            I CTQPRR+A +S++KRVA E   +     GY IRFE    E T+I ++T+G+LLR+
Sbjct: 489 LIGCTQPRRVAAMSVAKRVAEEMDVELGQECGYAIRFEDCTSENTRIKYMTDGILLRE 546



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 80/127 (62%), Gaps = 5/127 (3%)

Query: 809 RTGPGVCYRLYSEEQYS---LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 865
           RTGPG C+RLY+E Q+    L+A  + PEI+R ++ +++L L  +G+ D+ KF F++APP
Sbjct: 770 RTGPGQCFRLYTERQFKEEMLIA--TVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPP 827

Query: 866 AENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
            +N+ +S+  L   GA+D+  R+T LGR + + P+D  L KML+     H  D +L +  
Sbjct: 828 QDNMLNSMYQLWTLGALDNIGRLTDLGRKMVEFPLDPTLSKMLIVSEGMHCSDEVLTVVS 887

Query: 926 ALNFGAI 932
            L+  AI
Sbjct: 888 MLSVPAI 894



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 38/58 (65%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            +D  L  Y  +++DE HER L+ D L G+++ ++   A++K+I+ SAT++ E F  +F
Sbjct: 549  SDPDLDQYSAIIMDEAHERSLNTDVLFGLLRDVMAHRADLKLIVTSATMDAEKFANFF 606


>gi|145632434|ref|ZP_01788169.1| ATP-dependent helicase [Haemophilus influenzae 3655]
 gi|144987341|gb|EDJ93871.1| ATP-dependent helicase [Haemophilus influenzae 3655]
          Length = 1304

 Score =  267 bits (683), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 171/495 (34%), Positives = 267/495 (53%), Gaps = 35/495 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLL 472

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  ++ + + LS+
Sbjct: 473 EELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYK----EWLGVKKDRVRSKKWCKRRG 717
           Q P      +        +       D L  LN ++    +   + K++ R +  C++  
Sbjct: 533 QDPRERPQEKQQASNEKHRRFADKKSDFLAFLNLWRYLQEQQKALSKNQFRRQ--CQKDF 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE
Sbjct: 591 LNYLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE 645

Query: 778 EAPKRRKMLKADNAY 792
               +++ L A NA+
Sbjct: 646 ----KKQYLGARNAH 656



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  V+ L + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 465 IQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++  F     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELAFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  +LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELQTELGDLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|417841243|ref|ZP_12487347.1| ATP-dependent RNA helicase hrpA [Haemophilus haemolyticus M19501]
 gi|341949281|gb|EGT75885.1| ATP-dependent RNA helicase hrpA [Haemophilus haemolyticus M19501]
          Length = 1303

 Score =  267 bits (682), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 171/495 (34%), Positives = 267/495 (53%), Gaps = 35/495 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A I++V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIVEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K ++T++GR L+ LPVD  L KML+       +  V+ + A LS+
Sbjct: 473 EELGAFEMVRTKSGEKRQLTAVGRQLAQLPVDPRLAKMLLSAVSQGALHEVMIIVAALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAY----KEWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN +    ++   + K++ R +  C++  
Sbjct: 533 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWNYVQEQQKALTKNQFRRQ--CQKDF 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   +  Q +  +   GL   I    A       AL  G   LL  I  K+AE
Sbjct: 591 LNYLRIREWQDIYHQIRLTVRKMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE 645

Query: 778 EAPKRRKMLKADNAY 792
               +++ L A NA+
Sbjct: 646 ----KQQYLGARNAH 656



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKAEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA +        K ++T +GR L+ LPVD  L KML+       +  ++
Sbjct: 465 IQDGIKLLEELGAFEMVRTKSGEKRQLTAVGRQLAQLPVDPRLAKMLLSAVSQGALHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVAALSIQ--DPRER 538



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIVEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|419840082|ref|ZP_14363479.1| ATP-dependent helicase HrpA [Haemophilus haemolyticus HK386]
 gi|386908387|gb|EIJ73083.1| ATP-dependent helicase HrpA [Haemophilus haemolyticus HK386]
          Length = 1303

 Score =  267 bits (682), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 171/493 (34%), Positives = 266/493 (53%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K ++T+ GR L+ LPVD  L KML+       +  V+ + A LS+
Sbjct: 473 EELGAFEMVRTKSGEKRQLTAAGRQLAQLPVDPRLAKMLLSAVSQGALHEVMIIVAALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN +      +K+  ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWGYLQEQQKELSKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKAEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+   +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDDTQTKLMTDGILL 185



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA +        K ++T  GR L+ LPVD  L KML+       +  ++
Sbjct: 465 IQDGIKLLEELGAFEMVRTKSGEKRQLTAAGRQLAQLPVDPRLAKMLLSAVSQGALHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVAALSIQ--DPRER 538



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|417319790|ref|ZP_12106339.1| ATP-dependent RNA helicase HrpA [Vibrio parahaemolyticus 10329]
 gi|328473761|gb|EGF44596.1| ATP-dependent RNA helicase HrpA [Vibrio parahaemolyticus 10329]
          Length = 1278

 Score =  267 bits (682), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 232/393 (59%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 221 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 273

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 274 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 329

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 330 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVEEGICI 389

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 390 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 449

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D+K+R+TS+GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 450 EELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMIIAAALSIQD 509

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT +N +
Sbjct: 510 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNLW 542



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 84/135 (62%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 381 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 440

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D+K+R+T++GR L+ LP+D  L +M++    +  +  +++
Sbjct: 441 NIQDGVRLLEELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMI 500

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 501 IAAALSIQ--DPRER 513



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 58  LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 160



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234



 Score = 40.0 bits (92), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 194


>gi|433657645|ref|YP_007275024.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus BB22OP]
 gi|432508333|gb|AGB09850.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus BB22OP]
          Length = 1328

 Score =  266 bits (681), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 232/393 (59%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 211 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 270

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 271 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 323

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 324 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 379

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 380 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVEEGICI 439

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 440 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 499

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D+K+R+TS+GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 500 EELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMIIAAALSIQD 559

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT +N +
Sbjct: 560 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNLW 592



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 84/135 (62%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 431 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 490

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D+K+R+T++GR L+ LP+D  L +M++    +  +  +++
Sbjct: 491 NIQDGVRLLEELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMI 550

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 551 IAAALSIQ--DPRER 563



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 108 LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 167

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R++ E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 168 SVANRISEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 210



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 211  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 270

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 271  HFNNAPIIEVSGRT 284



 Score = 40.4 bits (93), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 211 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 244


>gi|419801296|ref|ZP_14326531.1| ATP-dependent helicase HrpA [Haemophilus parainfluenzae HK262]
 gi|385193860|gb|EIF41208.1| ATP-dependent helicase HrpA [Haemophilus parainfluenzae HK262]
          Length = 1279

 Score =  266 bits (681), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 170/493 (34%), Positives = 267/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 162 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 221

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 222 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 272

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 273 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 328

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 329 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 388

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 389 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 448

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K ++T++GR L+ LPVD  L KML+       +  V+ + A LS+
Sbjct: 449 EELGAFEMVRTKAGEKRQLTAVGRQLAQLPVDPRLAKMLLTAVSQGALHEVMIIVAALSI 508

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  L  ++     +K+  ++  ++ C++  + 
Sbjct: 509 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLKLWRYLQEQQKELSKNQFRRQCQKDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 569 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 621

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 622 --KQQYLGARNAH 632



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 58  SLPVSQRKAEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 117

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 118 RSVAARIAEELNTELGGLVGYKVRFNDQIGDDTQIKLMTDGILL 161



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 9/137 (6%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   
Sbjct: 380 GRVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKR 439

Query: 868 NIESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTM 920
           +I+  ++ L + GA +        K ++T +GR L+ LPVD  L KML+       +  +
Sbjct: 440 HIQDGIKLLEELGAFEMVRTKAGEKRQLTAVGRQLAQLPVDPRLAKMLLTAVSQGALHEV 499

Query: 921 LLLDLALNFGAIDSKER 937
           +++  AL+    D +ER
Sbjct: 500 MIIVAALSIQ--DPRER 514



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 162  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 221

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 222  HFNNAPIIEVSGRT 235



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 162 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 195


>gi|153836525|ref|ZP_01989192.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus AQ3810]
 gi|149750123|gb|EDM60868.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus AQ3810]
          Length = 1335

 Score =  266 bits (681), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 232/393 (59%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 218 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 277

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 278 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 330

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 331 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 386

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 387 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVEEGICI 446

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 447 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 506

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D+K+R+TS+GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 507 EELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMIIAAALSIQD 566

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT +N +
Sbjct: 567 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNLW 599



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 84/135 (62%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 438 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 497

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D+K+R+T++GR L+ LP+D  L +M++    +  +  +++
Sbjct: 498 NIQDGVRLLEELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMI 557

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 558 IAAALSIQ--DPRER 570



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 115 LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 174

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 175 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 217



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 218  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 277

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 278  HFNNAPIIEVSGRT 291



 Score = 40.4 bits (93), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 218 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 251


>gi|378697296|ref|YP_005179254.1| ATP-dependent helicase [Haemophilus influenzae 10810]
 gi|301169812|emb|CBW29416.1| ATP-dependent helicase [Haemophilus influenzae 10810]
          Length = 1303

 Score =  266 bits (681), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 169/493 (34%), Positives = 267/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K  +T +GR L+ LPVD  L KM++    F  +  ++ + + LS+
Sbjct: 473 EELGAFEMVRTKAGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN ++     +K+  ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQASDEKHRRFTDKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA +        K  +T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 465 IQDGIKLLEELGAFEMVRTKAGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  +LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAVRIAEELETELGDLVGYKVRFNDQISDNTQIKLMTDGILL 185



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 41.2 bits (95), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 184 RKMLKADNAYEIEEEEEEEEGE------RLESMDANEVEFRLKHDPKQV-QVATDNFLSS 236
           R++     A  I EE E E G+      R     ++  + +L  D   + ++  D FL+ 
Sbjct: 137 RRIAARSVAVRIAEELETELGDLVGYKVRFNDQISDNTQIKLMTDGILLAEIQNDRFLNQ 196

Query: 237 YDILILDEVHERHLYGDFLLGVI 259
           Y  LI+DE HER L  DF+LG +
Sbjct: 197 YSCLIIDEAHERSLNNDFILGYL 219


>gi|148828231|ref|YP_001292984.1| ATP-dependent RNA helicase HrpA [Haemophilus influenzae PittGG]
 gi|148719473|gb|ABR00601.1| hypothetical protein CGSHiGG_08985 [Haemophilus influenzae PittGG]
          Length = 1303

 Score =  266 bits (681), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 171/495 (34%), Positives = 267/495 (53%), Gaps = 35/495 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   GVC 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGVCI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K  +T +GR L+ LPVD  L KM++    F  +  ++ + + LS+
Sbjct: 473 EELGAFEMVRTKAGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYK----EWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN ++    +   + K++ R +  C++  
Sbjct: 533 QDPRERPQEKQQASDEKHRRFTDKKSDFLAFLNLWRYLQEQQKALSKNQFRRQ--CQKDF 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE
Sbjct: 591 LNYLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE 645

Query: 778 EAPKRRKMLKADNAY 792
               +++ L A NA+
Sbjct: 646 ----KQQYLGARNAH 656



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   GVC RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGVCIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA +        K  +T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 465 IQDGIKLLEELGAFEMVRTKAGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILL 185



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|308126472|ref|ZP_05910401.2| ATP-dependent helicase HrpA [Vibrio parahaemolyticus AQ4037]
 gi|308107711|gb|EFO45251.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus AQ4037]
          Length = 1328

 Score =  266 bits (681), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 232/393 (59%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 211 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 270

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 271 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 323

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 324 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 379

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 380 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVEEGICI 439

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 440 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 499

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D+K+R+TS+GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 500 EELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMIIAAALSIQD 559

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT +N +
Sbjct: 560 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNLW 592



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 84/135 (62%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 431 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 490

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D+K+R+T++GR L+ LP+D  L +M++    +  +  +++
Sbjct: 491 NIQDGVRLLEELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMI 550

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 551 IAAALSIQ--DPRER 563



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 108 LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 167

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 168 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 210



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 211  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 270

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 271  HFNNAPIIEVSGRT 284



 Score = 40.4 bits (93), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 211 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 244


>gi|262394319|ref|YP_003286173.1| ATP-dependent helicase HrpA [Vibrio sp. Ex25]
 gi|262337913|gb|ACY51708.1| ATP-dependent helicase HrpA [Vibrio sp. Ex25]
          Length = 1328

 Score =  266 bits (681), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 251/437 (57%), Gaps = 20/437 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 211 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 270

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 271 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 323

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 324 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 379

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 380 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 439

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 440 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 499

Query: 609 TQHGAIDS-----KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI+S     K+R+TS+GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 500 EELGAINSEVKDPKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMIIAAALSIQD 559

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIEE 720
           P    + +    +   +       D LT +N + E++  ++  + S   +K CK+  +  
Sbjct: 560 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNLW-EYIQKQQKALSSNQFRKQCKQDYLNY 618

Query: 721 QRFYEVTKLRSQFKQVL 737
            R  E   +  Q  Q +
Sbjct: 619 LRVREWQDVYFQIHQSM 635



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 84/134 (62%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   N
Sbjct: 432 RVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRN 491

Query: 869 IESSVRSLTQHGAIDS-----KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI+S     K+R+T++GR L+ LP+D  L +M++    +  +  ++++
Sbjct: 492 IQDGVRLLEELGAINSEVKDPKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMII 551

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 552 AAALSIQ--DPRER 563



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 108 LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 167

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 168 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 210



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 211  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 270

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 271  HFNNAPIIEVSGRT 284



 Score = 40.4 bits (93), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 211 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 244


>gi|322705703|gb|EFY97287.1| DEAD/DEAH box helicase, putative [Metarhizium anisopliae ARSEF 23]
          Length = 1518

 Score =  266 bits (681), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 168/479 (35%), Positives = 266/479 (55%), Gaps = 41/479 (8%)

Query: 299  GVIKCLLHSTVEVAADNFLSSYDV--LVLDEIHERHLHGDFLLGVIKCLLHSTAEV-KII 355
            GV+   L ++     D   S  DV  +++DE+HER L  DFLL +I+ ++ +  ++ K+I
Sbjct: 687  GVLLRRLQTSGGRVEDVVASLADVSHVIIDEVHERSLDTDFLLNLIRDVMRTKKDMLKLI 746

Query: 356  LMSATINIELFHTYFNRIA---KIIKVPGRLYPIQLEYH--PIVELDRTKSEKLDPG--- 407
            LMSAT++   F  YF         +++ GR +P+  EY+   +V +     EK D G   
Sbjct: 747  LMSATLDASTFMDYFASEGLSVGCVEIAGRTFPVD-EYYLDDVVRMTGFNVEKPDAGFIT 805

Query: 408  ------------------PYIRILSIIDKKYPRTERGD-VLIFMSGISEISSIVRAAQEY 448
                                +  +  ID +    ++ D +LIF+ G+ EI+      +  
Sbjct: 806  DESMGKIIQKLGHRINYTLLVDAVKAIDYELSYEKKPDGILIFLPGVGEINHACNHLRSI 865

Query: 449  NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKV 508
            N       VLPLH++L   EQ RVF   P G RK +V+TN+AETSITID I  V+DSGKV
Sbjct: 866  NSLH----VLPLHASLETREQKRVFSKPPPGKRKVVVATNVAETSITIDDIIAVIDSGKV 921

Query: 509  KEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIR 568
            KE S+D    M  L+E W S+A+ +QR+GRAGR   G CY+LY+E     +AE   PEIR
Sbjct: 922  KETSFDAQNNMRKLEETWASRAACKQRRGRAGRVQEGRCYKLYTENLERQMAERPEPEIR 981

Query: 569  RVSIDSLLLSLVCMGLGDVRKFPFLEAPP--AENIESSVRSLTQHGAIDSKERVTSLGRF 626
            RV ++ L LS+  MG+ DV +F      P  A+ IE +++ L + GA+D  E +T++G+ 
Sbjct: 982  RVPLEQLCLSVRAMGMRDVARFLGRSPTPPDAKAIEGAIKLLRRMGALDGDE-LTAMGQQ 1040

Query: 627  LSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNH 686
            L+ LP D+  GK++V+G++F  +D  +++AA+LS +SPF +   +  +   AR    S +
Sbjct: 1041 LAMLPADLRCGKLMVYGAIFGCLDDCVTIAAILSTRSPFVSPQEKREESRQARMRFFSGN 1100

Query: 687  GDPLTVLNAYKEWLGVKKDRVRSKK---WCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
            GD +T + A++EW  + KDR+  ++   +C    +  Q   +++  RSQ+ + L + GL
Sbjct: 1101 GDLITDMEAFREWDSMMKDRLPQRQVRAFCDENFLSYQTLSDISNTRSQYYEALNEIGL 1159



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 10/149 (6%)

Query: 9   WKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKS 68
           W    +T  ++ ++++ S    +   +  LP  Q +++I+ TV    V II+G+TG GKS
Sbjct: 555 WVSDSKTKEEWLRRQESSAWKDMLSKRQRLPAWQMREKIVKTVNDNHVTIISGETGSGKS 614

Query: 69  TQIPQYLVQ-------AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKH 121
           TQ  Q+++         G   +  TQPRRI+ + L+ RVA E  S     VGY IR E  
Sbjct: 615 TQSVQFILDDLYGKGVGGCANMIVTQPRRISALGLADRVAEERCSNVGGEVGYIIRGESR 674

Query: 122 RREKTKIVFITEGLLLRQ---DSGLITDI 147
           + + T+I F+T G+LLR+     G + D+
Sbjct: 675 QSKDTRITFVTAGVLLRRLQTSGGRVEDV 703



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 3/117 (2%)

Query: 809  RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP--A 866
            R   G CY+LY+E     +AE   PEIRRV ++ L LS+  MG+ DV +F      P  A
Sbjct: 954  RVQEGRCYKLYTENLERQMAERPEPEIRRVPLEQLCLSVRAMGMRDVARFLGRSPTPPDA 1013

Query: 867  ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + IE +++ L + GA+D  E +T +G+ L+ LP D+  GK++V+G++F  +D  + +
Sbjct: 1014 KAIEGAIKLLRRMGALDGDE-LTAMGQQLAMLPADLRCGKLMVYGAIFGCLDDCVTI 1069



 Score = 47.0 bits (110), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 1128 LVLDEIHERHLHGDFLLGVIKCLLHSTAEV-KIILMSATINIELFHTYF 1175
            +++DE+HER L  DFLL +I+ ++ +  ++ K+ILMSAT++   F  YF
Sbjct: 713  VIIDEVHERSLDTDFLLNLIRDVMRTKKDMLKLILMSATLDASTFMDYF 761



 Score = 41.6 bits (96), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 18/118 (15%)

Query: 1023 LDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN---- 1078
            + L    GA+D  E +T++G+ L+ LP D+  GK++V+G++F  +D  + +   L+    
Sbjct: 1020 IKLLRRMGALDGDE-LTAMGQQLAMLPADLRCGKLMVYGAIFGCLDDCVTIAAILSTRSP 1078

Query: 1079 FVHHSEEEEEEEA---------GERLESMDA-NEVEFRLKHDPKQVQVAA---DNFLS 1123
            FV   E+ EE            G+ +  M+A  E +  +K    Q QV A   +NFLS
Sbjct: 1079 FVSPQEKREESRQARMRFFSGNGDLITDMEAFREWDSMMKDRLPQRQVRAFCDENFLS 1136


>gi|308094674|ref|ZP_05890923.2| ATP-dependent helicase HrpA [Vibrio parahaemolyticus AN-5034]
 gi|308095658|ref|ZP_05907412.2| ATP-dependent helicase HrpA [Vibrio parahaemolyticus Peru-466]
 gi|308125353|ref|ZP_05774766.2| ATP-dependent helicase HrpA [Vibrio parahaemolyticus K5030]
 gi|28806444|dbj|BAC59716.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087971|gb|EFO37666.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus Peru-466]
 gi|308091221|gb|EFO40916.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus AN-5034]
 gi|308113627|gb|EFO51167.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus K5030]
          Length = 1328

 Score =  266 bits (681), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 232/393 (59%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 211 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 270

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 271 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 323

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 324 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 379

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 380 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVEEGICI 439

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 440 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 499

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D+K+R+TS+GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 500 EELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMIIAAALSIQD 559

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT +N +
Sbjct: 560 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNLW 592



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 84/135 (62%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 431 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 490

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D+K+R+T++GR L+ LP+D  L +M++    +  +  +++
Sbjct: 491 NIQDGVRLLEELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMI 550

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 551 IAAALSIQ--DPRER 563



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 108 LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 167

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 168 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 210



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 211  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 270

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 271  HFNNAPIIEVSGRT 284



 Score = 40.4 bits (93), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 211 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 244


>gi|161511056|ref|NP_797832.2| ATP-dependent RNA helicase HrpA [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 1278

 Score =  266 bits (681), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 232/393 (59%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 221 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 273

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 274 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 329

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 330 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVEEGICI 389

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 390 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 449

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D+K+R+TS+GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 450 EELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMIIAAALSIQD 509

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT +N +
Sbjct: 510 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNLW 542



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 84/135 (62%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 381 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 440

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D+K+R+T++GR L+ LP+D  L +M++    +  +  +++
Sbjct: 441 NIQDGVRLLEELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMI 500

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 501 IAAALSIQ--DPRER 513



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 58  LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 160



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234



 Score = 40.0 bits (92), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 194


>gi|145638116|ref|ZP_01793726.1| hypothetical protein CGSHiII_05079 [Haemophilus influenzae PittII]
 gi|145272445|gb|EDK12352.1| hypothetical protein CGSHiII_05079 [Haemophilus influenzae PittII]
 gi|309751281|gb|ADO81265.1| Probable ATP-dependent RNA helicase [Haemophilus influenzae R2866]
          Length = 1303

 Score =  266 bits (681), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 170/493 (34%), Positives = 268/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERHIQDGVKLL 472

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  ++ + + LS+
Sbjct: 473 EELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN ++     +K+  ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYVQEQQKELSKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERH 464

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  V+ L + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 465 IQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|32035763|ref|ZP_00135626.1| COG1643: HrpA-like helicases [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126207849|ref|YP_001053074.1| ATP-dependent RNA helicase HrpA [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|126096641|gb|ABN73469.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 1299

 Score =  266 bits (681), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 151/436 (34%), Positives = 247/436 (56%), Gaps = 16/436 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR +P+++ Y  IVE D       D      IL+ +D+      RGD+
Sbjct: 249 HFNN-APIIEVSGRTFPVEVRYRLIVEED-------DQDQLQGILNAVDELQAEG-RGDI 299

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+  ++ +   +LPL++ LS  EQ R+F   P GL + I++TN
Sbjct: 300 LIFMNGEREIRDTAEALQK--QELRFTEILPLYARLSAAEQQRIFQ--PSGLNRVILATN 355

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C 
Sbjct: 356 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTSEGICI 415

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    ++  +R L
Sbjct: 416 RLYSEEDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQVQDGIRLL 475

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GAI+   ++T++G  L+ LP+D  LG+M++  +    +  V+ + + LS+Q P    
Sbjct: 476 EELGAINGN-KLTAIGHQLAQLPIDPRLGRMVIAAAQNGSLHEVMMIVSALSIQDPRERP 534

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEV 726
             R    +   +       D L  +N +      +K+  ++  +K C++  +   R  E 
Sbjct: 535 QERQQAADEKHRRFADKDSDFLAFVNLWHYIQTQQKELTKNQFRKQCQKDFLNYLRVREW 594

Query: 727 TKLRSQFKQVLGDSGL 742
             +  Q +  + + GL
Sbjct: 595 QDIYHQLRLAVREMGL 610



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 78/129 (60%), Gaps = 3/129 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++ P    
Sbjct: 408 RTSEGICIRLYSEEDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQ 467

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           ++  +R L + GAI+   ++T +G  L+ LP+D  LG+M++  +    +  ++++  AL+
Sbjct: 468 VQDGIRLLEELGAINGN-KLTAIGHQLAQLPIDPRLGRMVIAAAQNGSLHEVMMIVSALS 526

Query: 929 FGAIDSKER 937
               D +ER
Sbjct: 527 IQ--DPRER 533



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRR 90
           T   LPV+  ++EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRR
Sbjct: 82  TYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRR 141

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  S++ R+A E  S+    VGY++RF     E T +  +T+G+LL
Sbjct: 142 LAARSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVKLMTDGILL 188



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 249  HFNNAPIIEVSGRT 262



 Score = 45.1 bits (105), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++  D +L+ YD LI+DE HER L  DF+LG +   LH
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILH 227


>gi|419845923|ref|ZP_14369183.1| ATP-dependent helicase HrpA [Haemophilus parainfluenzae HK2019]
 gi|386414704|gb|EIJ29251.1| ATP-dependent helicase HrpA [Haemophilus parainfluenzae HK2019]
          Length = 1282

 Score =  266 bits (681), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 171/493 (34%), Positives = 266/493 (53%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 162 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 221

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 222 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 272

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 273 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 328

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 329 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 388

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 389 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 448

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K ++T  GR L+ LPVD  L KML+       +  V+ + A LS+
Sbjct: 449 EELGAFEMVRTKSGEKRQLTVTGRQLAQLPVDPRLAKMLLSAVSQGALHEVMIIVAALSI 508

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN ++     +K+  ++  ++ C++  + 
Sbjct: 509 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKELSKNQFRRQCQKDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 569 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQPIHTALLSG---LLSHIGLKEAE-- 621

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 622 --KQQYLGARNAH 632



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 58  SLPVSQRKAEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 117

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 118 RSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMTDGILL 161



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 9/137 (6%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   
Sbjct: 380 GRVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKR 439

Query: 868 NIESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTM 920
           +I+  ++ L + GA +        K ++T  GR L+ LPVD  L KML+       +  +
Sbjct: 440 HIQDGIKLLEELGAFEMVRTKSGEKRQLTVTGRQLAQLPVDPRLAKMLLSAVSQGALHEV 499

Query: 921 LLLDLALNFGAIDSKER 937
           +++  AL+    D +ER
Sbjct: 500 MIIVAALSIQ--DPRER 514



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 162  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 221

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 222  HFNNAPIIEVSGRT 235



 Score = 40.8 bits (94), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 162 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 195


>gi|254230027|ref|ZP_04923427.1| ATP-dependent helicase HrpA [Vibrio sp. Ex25]
 gi|151937468|gb|EDN56326.1| ATP-dependent helicase HrpA [Vibrio sp. Ex25]
          Length = 1354

 Score =  266 bits (680), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 251/437 (57%), Gaps = 20/437 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 237 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 296

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 297 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 349

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 350 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 405

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 406 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 465

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 466 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 525

Query: 609 TQHGAIDS-----KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI+S     K+R+TS+GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 526 EELGAINSEVKDPKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMIIAAALSIQD 585

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIEE 720
           P    + +    +   +       D LT +N + E++  ++  + S   +K CK+  +  
Sbjct: 586 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNLW-EYIQKQQKALSSNQFRKQCKQDYLNY 644

Query: 721 QRFYEVTKLRSQFKQVL 737
            R  E   +  Q  Q +
Sbjct: 645 LRVREWQDVYFQIHQSM 661



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 84/134 (62%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   N
Sbjct: 458 RVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRN 517

Query: 869 IESSVRSLTQHGAIDS-----KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI+S     K+R+T++GR L+ LP+D  L +M++    +  +  ++++
Sbjct: 518 IQDGVRLLEELGAINSEVKDPKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMII 577

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 578 AAALSIQ--DPRER 589



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 134 LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 193

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 194 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 236



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 237  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 296

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 297  HFNNAPIIEVSGRT 310



 Score = 40.0 bits (92), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 237 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 270


>gi|408822200|ref|ZP_11207090.1| ATP-dependent RNA helicase [Pseudomonas geniculata N1]
          Length = 1360

 Score =  266 bits (680), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 156/433 (36%), Positives = 245/433 (56%), Gaps = 20/433 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELD-----RTKSEKLDPGPYIRILSIIDKKYPRT 423
           +F+  A +I V GR YP+++ Y  +         RT ++         I+S ID+     
Sbjct: 240 HFDN-APVISVEGRTYPVEVRYRALEGEGEQEGERTVNDA--------IVSAIDEITRLD 290

Query: 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKC 483
            RGDVLIF+ G  EI    ++ +    K +   VLPL++ LS ++QDRVF+  P   R+ 
Sbjct: 291 ARGDVLIFLPGEREIRDAHQSLE--RRKYRNTEVLPLYARLSNQDQDRVFNPGPN--RRI 346

Query: 484 IVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543
           +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QRKGR GR  
Sbjct: 347 VLATNVAETSLTVPRIRYVVDPGFARVKRYSPRNKLDRLHIEPISQASANQRKGRCGRIA 406

Query: 544 PGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G+CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG + +FPFLEAP    +  
Sbjct: 407 EGICYRLYAESDFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEEFPFLEAPDERAVAD 466

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
             + LT+ GAID++ R+T++G+ ++ LPVD+ L +MLV       +  +L +A+ L +Q 
Sbjct: 467 GWQQLTELGAIDAERRMTTIGKQMARLPVDVKLARMLVAAQAAGCLRPMLVIASFLGIQD 526

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQ 721
           P           ++A  +      + + VL  +  +    +D  +SK   WC R  +   
Sbjct: 527 PRERPPEARGAADSAHAQFADGRSEFVGVLRLWDGYRQAHEDLTQSKLRDWCGRHFLGFL 586

Query: 722 RFYEVTKLRSQFK 734
           R  E  +L  Q +
Sbjct: 587 RMREWRELHRQLR 599



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 80/130 (61%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG + +FPFLEAP   
Sbjct: 403 GRIAEGICYRLYAESDFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEEFPFLEAPDER 462

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + LT+ GAID++ R+TT+G+ ++ LPVD+ L +MLV       +  ML+  +A 
Sbjct: 463 AVADGWQQLTELGAIDAERRMTTIGKQMARLPVDVKLARMLVAAQAAGCLRPMLV--IAS 520

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 521 FLGIQDPRER 530



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 68/103 (66%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LP+A+    II  +   +VV+IAG+TG GK+TQ+P+  + AG  +   I CTQPRRIA  
Sbjct: 77  LPIAREADAIIKLIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGQAGMIGCTQPRRIAAR 136

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ RVA E  S+   LVGYQ+RF     E ++I F+T+G+LL
Sbjct: 137 AVASRVAQELQSELGQLVGYQVRFNDKVSEDSRIKFMTDGILL 179



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 44.7 bits (104), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LS+YD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYL 213


>gi|194366873|ref|YP_002029483.1| ATP-dependent helicase HrpA [Stenotrophomonas maltophilia R551-3]
 gi|194349677|gb|ACF52800.1| ATP-dependent helicase HrpA [Stenotrophomonas maltophilia R551-3]
          Length = 1360

 Score =  266 bits (680), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 157/433 (36%), Positives = 244/433 (56%), Gaps = 20/433 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELD-----RTKSEKLDPGPYIRILSIIDKKYPRT 423
           +F+  A +I V GR YP+++ Y  +         RT ++         I+S ID+     
Sbjct: 240 HFDN-APVISVEGRTYPVEVRYRALEGEGEQEGERTVNDA--------IVSAIDEITRLD 290

Query: 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKC 483
            RGDVLIF+ G  EI    ++ +    K +   VLPL++ LS ++QDRVF+  P   R+ 
Sbjct: 291 SRGDVLIFLPGEREIRDAHQSLE--RRKYRNTEVLPLYARLSNQDQDRVFNPGPN--RRI 346

Query: 484 IVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543
           +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QRKGR GR  
Sbjct: 347 VLATNVAETSLTVPRIRYVVDPGFARVKRYSPRNKLDRLHIEPISQASANQRKGRCGRVA 406

Query: 544 PGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G+CYRLY+E  +   +E++ PEIRR S+  ++L ++ +GLG +  FPFLEAP    +  
Sbjct: 407 EGICYRLYAEADFQARSEFTDPEIRRSSLAGVILRMLQLGLGRIEDFPFLEAPDERAVAD 466

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
             + LT+ GAIDS+  +T++G+ +S LPVD+ L +MLV       +  +L +A+ L +Q 
Sbjct: 467 GWQHLTELGAIDSERHLTAIGKQMSRLPVDVKLARMLVAAQAAGCLRPMLVIASFLGIQD 526

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQ 721
           P           ++A  +      + + VL  +  +    +D  +SK   WC R  +   
Sbjct: 527 PRERPPEARGAADSAHAQFADGRSEFVGVLRLWDAYRQAHEDLTQSKLRDWCGRHFLGFL 586

Query: 722 RFYEVTKLRSQFK 734
           R  E  +L  Q +
Sbjct: 587 RMREWRELHRQLR 599



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 78/130 (60%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  +   +E++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 403 GRVAEGICYRLYAEADFQARSEFTDPEIRRSSLAGVILRMLQLGLGRIEDFPFLEAPDER 462

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + LT+ GAIDS+  +T +G+ +S LPVD+ L +MLV       +  ML+  +A 
Sbjct: 463 AVADGWQHLTELGAIDSERHLTAIGKQMSRLPVDVKLARMLVAAQAAGCLRPMLV--IAS 520

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 521 FLGIQDPRER 530



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 68/103 (66%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LP+A+    II  +   +VV+IAG+TG GK+TQ+P+  + AG  +   I CTQPRRIA  
Sbjct: 77  LPIAREADAIIGLIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGQAGMIGCTQPRRIAAR 136

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ RVA E  S+   LVGYQ+RF     E ++I F+T+G+LL
Sbjct: 137 AVASRVAQELQSELGQLVGYQVRFNDKVSEDSRIKFMTDGILL 179



 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 44.3 bits (103), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LS+YD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYL 213


>gi|260581877|ref|ZP_05849673.1| ATP-dependent helicase HrpA [Haemophilus influenzae NT127]
 gi|260095070|gb|EEW78962.1| ATP-dependent helicase HrpA [Haemophilus influenzae NT127]
          Length = 1303

 Score =  266 bits (680), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 171/493 (34%), Positives = 264/493 (53%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y PI E D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIAEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHME--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K ++T+ GR L+ LPVD  L KML+       +  V+ + A LS+
Sbjct: 473 EELGAFEMVRTKAGEKRQLTAAGRQLAQLPVDPRLAKMLLSAVSQGALHEVMIIVAALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN +      +K   ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWNYVQEQQKSLTKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K +I   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKADIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELKTELGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA +        K ++T  GR L+ LPVD  L KML+       +  ++
Sbjct: 465 IQDGIKLLEELGAFEMVRTKAGEKRQLTAAGRQLAQLPVDPRLAKMLLSAVSQGALHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVAALSIQ--DPRER 538



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|386834081|ref|YP_006239396.1| ATP-dependent helicase HrpA [Pasteurella multocida subsp. multocida
           str. 3480]
 gi|385200782|gb|AFI45637.1| ATP-dependent helicase HrpA [Pasteurella multocida subsp. multocida
           str. 3480]
          Length = 1304

 Score =  266 bits (680), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 170/496 (34%), Positives = 271/496 (54%), Gaps = 37/496 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE    + ++L       IL  +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVE--NEEQDQLQA-----ILDAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ + K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQDLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   NI+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRNIQDGIKLL 472

Query: 609 TQHGA-------IDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +  A          K ++T  G+ L+ LPVD  L KML+    F+ +  V+ + + LS+
Sbjct: 473 EELEAFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKFNCLHEVMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYK----EWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN ++    +   + K++ R  + C++  
Sbjct: 533 QDPRERPQEKQQSADDKHRRFADKKSDFLAFLNLWQFIQTQQKALSKNQFR--RLCQKDY 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL-ITDIPGPDASLSSRERALRHGEIKLLQAIKRKKA 776
           +   R  E   +  Q +  + + GL I   P   A + +   AL  G   LL  I  K++
Sbjct: 591 LNYLRIREWQDIYHQIRLTVREMGLPINSQPAEYAQIHT---ALLSG---LLSHIGMKES 644

Query: 777 EEAPKRRKMLKADNAY 792
           E++    + L A NA+
Sbjct: 645 EKS----QYLGARNAH 656



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 3/112 (2%)

Query: 29  MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IAC 85
           +K  E   +LPV+Q K EI   + + +VV+IAG+TG GK+TQ+P+  ++ G      I  
Sbjct: 74  VKTIEFPENLPVSQRKAEIQKLISQHQVVVIAGETGSGKTTQLPKMCLELGCGTKGLIGH 133

Query: 86  TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           TQPRRIA  S++ R+A E  ++  +LVGY++RF     + T +  +T+G+LL
Sbjct: 134 TQPRRIAARSVASRIAEELKTELGDLVGYKVRFNDQISDNTMVKLMTDGILL 185



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   N
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRN 464

Query: 869 IESSVRSLTQHGA-------IDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L +  A          K ++T  G+ L+ LPVD  L KML+    F+ +  ++
Sbjct: 465 IQDGIKLLEELEAFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKFNCLHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 43.5 bits (101), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYL 219


>gi|46560585|ref|NP_848144.3| putative ATP-dependent RNA helicase DHX33 [Mus musculus]
 gi|81912817|sp|Q80VY9.1|DHX33_MOUSE RecName: Full=Putative ATP-dependent RNA helicase DHX33; AltName:
           Full=DEAH box protein 33
 gi|30704933|gb|AAH52172.1| DEAH (Asp-Glu-Ala-His) box polypeptide 33 [Mus musculus]
 gi|148680689|gb|EDL12636.1| DEAH (Asp-Glu-Ala-His) box polypeptide 33 [Mus musculus]
          Length = 698

 Score =  266 bits (679), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 152/443 (34%), Positives = 259/443 (58%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 169 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVD 228

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFNR A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 229 LFSQYFNR-APVLYLEGRQHPIQIFY--------TKQPQQD---YLHAALVSVFQIHQEA 276

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 277 PASQ--DILVFLTGQEEIEAMSKTCRDIARHLPDGCPSMLVLPLYASLPYSQQLRVFQGA 334

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 335 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 394

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 395 GRAGREDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVILQLLAMKVPNVLTFDFMSKP 454

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++IE+++  L   GA++ K+    +T +GR ++  P++    K ++  S FH  + +L
Sbjct: 455 SPDHIEAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPRFAKTILLSSKFHCTEEIL 514

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + ++ RK+  S+ GD +T+LN Y+ +  +  +    K WC
Sbjct: 515 TIVSLLSVDSVLYNPPARRDEVQSVRKKFISSEGDHITLLNIYRTFKNIGGN----KDWC 570

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    V ++R+Q +++
Sbjct: 571 KENFVNSKNMLLVAEVRAQLREI 593



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ + + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 62  RRSLPIFRARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 121

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RFE    E T+I F+T+G+LLR+
Sbjct: 122 AAISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLRE 169



 Score = 73.6 bits (179), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 70/118 (59%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 399 REDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVILQLLAMKVPNVLTFDFMSKPSPDH 458

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           IE+++  L   GA++ K+    +T +GR ++  P++    K ++  S FH  + +L +
Sbjct: 459 IEAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPRFAKTILLSSKFHCTEEILTI 516



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 12/122 (9%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      +E+  E G+      R E + + +   +   D   ++ A +D+ L  Y  +
Sbjct: 123  AISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLREAISDSLLRKYSCV 182

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHTYFNRIAKDLL 1183
            +LDE HER +H D L GV+K       E     +K+I+MSAT++++LF  YFNR     L
Sbjct: 183  ILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVDLFSQYFNRAPVLYL 242

Query: 1184 SG 1185
             G
Sbjct: 243  EG 244


>gi|312883583|ref|ZP_07743308.1| ATP-dependent RNA helicase HrpA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368806|gb|EFP96333.1| ATP-dependent RNA helicase HrpA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 1278

 Score =  266 bits (679), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 157/449 (34%), Positives = 258/449 (57%), Gaps = 21/449 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD +++DE HER L+ DF+LG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQHDRYLNQYDTIIIDEAHERSLNIDFILGYLKELLPKRPDLKIIITSATIDPERFSD 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN+ A II+V GR YP++  Y P+ +      ++LD G +  +  + D+       GD+
Sbjct: 221 HFNQ-APIIEVSGRTYPVETRYRPLSDETEGDKDQLD-GIFEAVDELCDEGL-----GDI 273

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+R+F   P   R+ +++TN
Sbjct: 274 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSASEQNRIFQ--PHAGRRIVLATN 329

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 330 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVEEGICI 389

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RL+SE+ ++   E++ PEI R ++ S++L +  +GLG++  FPF+E+P   NI+  +R L
Sbjct: 390 RLFSEDDFNQRPEFTDPEILRTNLASVILQMTALGLGEIEAFPFVESPDKRNIQDGMRLL 449

Query: 609 TQHGAIDS-----KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAIDS     K+R+T +GR L+ LP+D  L +M++    F  +  ++ +A+ LS+Q 
Sbjct: 450 EELGAIDSQAKEPKKRLTKMGRQLARLPIDPRLARMVLEAPKFSALKELMVIASALSIQD 509

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIEE 720
           P    + +    +   +       D LT++N + ++L  ++ ++ S   +K CK+  +  
Sbjct: 510 PRERPSDKQQSSDDKHRRFFHEESDFLTLVNLW-DYLQKQQKQLSSNQFRKQCKQDYLNY 568

Query: 721 QRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
            R  E   +  Q  Q + + G  I D P 
Sbjct: 569 LRVREWQDVYFQVHQSMREMGFNINDEPA 597



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 83/134 (61%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RL+SE+ ++   E++ PEI R ++ S++L +  +GLG++  FPF+E+P   N
Sbjct: 382 RVEEGICIRLFSEDDFNQRPEFTDPEILRTNLASVILQMTALGLGEIEAFPFVESPDKRN 441

Query: 869 IESSVRSLTQHGAIDS-----KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  +R L + GAIDS     K+R+T +GR L+ LP+D  L +M++    F  +  ++++
Sbjct: 442 IQDGMRLLEELGAIDSQAKEPKKRLTKMGRQLARLPIDPRLARMVLEAPKFSALKELMVI 501

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 502 ASALSIQ--DPRER 513



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 58  LPVSQKKADIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  +   ++VGY++RF     + TKI  +T+G+LL
Sbjct: 118 SVANRIAEEMETPLGSVVGYKVRFNDQISDSTKIKLMTDGILL 160



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD +++DE HER L+ DF+LG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQHDRYLNQYDTIIIDEAHERSLNIDFILGYLKELLPKRPDLKIIITSATIDPERFSD 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN+     +SG T
Sbjct: 221  HFNQAPIIEVSGRT 234


>gi|386266222|ref|YP_005829714.1| ATP-dependent RNA helicase [Haemophilus influenzae R2846]
 gi|309973458|gb|ADO96659.1| Probable ATP-dependent RNA helicase [Haemophilus influenzae R2846]
          Length = 1303

 Score =  266 bits (679), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 169/493 (34%), Positives = 266/493 (53%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+    + RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAES-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K  +T +GR L+ LPVD  L KM++    F  +  ++ + + LS+
Sbjct: 473 EELGAFEMVRTKAGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN +      +K   ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWNYVQEQQKSLTKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILL 185



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA +        K  +T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 465 IQDGIKLLEELGAFEMVRTKAGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|91223780|ref|ZP_01259044.1| ATP-dependent helicase HrpA [Vibrio alginolyticus 12G01]
 gi|91191272|gb|EAS77537.1| ATP-dependent helicase HrpA [Vibrio alginolyticus 12G01]
          Length = 1328

 Score =  266 bits (679), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 251/437 (57%), Gaps = 20/437 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 211 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 270

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 271 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 323

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 324 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHTGRRIVLATN 379

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 380 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 439

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 440 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 499

Query: 609 TQHGAIDS-----KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI+S     K+R+TS+GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 500 EELGAINSEVKDPKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMIIAAALSIQD 559

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIEE 720
           P    + +    +   +       D LT +N + E++  ++  + S   +K CK+  +  
Sbjct: 560 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNLW-EYIQKQQKALSSNQFRKQCKQDYLNY 618

Query: 721 QRFYEVTKLRSQFKQVL 737
            R  E   +  Q  Q +
Sbjct: 619 LRVREWQDVYFQIHQSM 635



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 84/134 (62%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   N
Sbjct: 432 RVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRN 491

Query: 869 IESSVRSLTQHGAIDS-----KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI+S     K+R+T++GR L+ LP+D  L +M++    +  +  ++++
Sbjct: 492 IQDGVRLLEELGAINSEVKDPKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMII 551

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 552 AAALSIQ--DPRER 563



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 108 LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 167

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 168 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 210



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 211  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 270

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 271  HFNNAPIIEVSGRT 284



 Score = 40.4 bits (93), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 211 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 244


>gi|329896410|ref|ZP_08271509.1| ATP-dependent helicase HrpA [gamma proteobacterium IMCC3088]
 gi|328921830|gb|EGG29201.1| ATP-dependent helicase HrpA [gamma proteobacterium IMCC3088]
          Length = 1241

 Score =  266 bits (679), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 156/429 (36%), Positives = 248/429 (57%), Gaps = 12/429 (2%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DFLLG ++ LL    ++K+I+ SATI++E F  
Sbjct: 117 AEIQHDRLLKRYDTLIIDEAHERSLNIDFLLGYLRRLLPKRPDLKVIITSATIDVERFSD 176

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           YFN  A II+V GR YP+ ++Y P  +     ++++     +  L +ID+ +   +RGDV
Sbjct: 177 YFNG-APIIEVEGRSYPVDVQYAPSADDGIELTDQV-----VDQLGLIDQGH-YGKRGDV 229

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+ G  EI  + +A +     S+ + VLPL++ LS  EQ+RVF  A     + ++STN
Sbjct: 230 LVFLPGEREIRDVAKALK----GSEQYDVLPLYARLSASEQNRVFQTASRRGIRVVLSTN 285

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GIR+V+DSG  +   Y   +K+  L    IS+ASA QRKGR GR   GVC 
Sbjct: 286 VAETSLTVPGIRYVIDSGLARISRYSYRSKLQRLPIEPISQASANQRKGRCGRVAEGVCI 345

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY E  +   +E++ PEI+R ++  ++L +  + LGDV +FPF+E P    I    R L
Sbjct: 346 RLYDEADFQARSEFTDPEIKRTNLAQVILQMRLLRLGDVARFPFIEPPDPRLIRDGFRLL 405

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GA+D K+ +T+LG  L+ LP+D  LG+MLV  +    +  VL + + L+VQ P    
Sbjct: 406 EELGAVDKKQDLTALGYQLARLPLDPRLGRMLVAATDRGVLAEVLLIVSALAVQDPRERP 465

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTK 728
             +    +TA +  E +  D L  +N ++ +L  +++ +   ++ K    E   +  V +
Sbjct: 466 GDKREQSDTAHRRFEDDRSDFLAWINTWR-YLETQREELSGNQFKKLCQKEFFNYLRVRE 524

Query: 729 LRSQFKQVL 737
            R   +Q+L
Sbjct: 525 WRDTHRQLL 533



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLY E  +   +E++ PEI+R ++  ++L +  + LGDV +FPF+E P   
Sbjct: 337 GRVAEGVCIRLYDEADFQARSEFTDPEIKRTNLAQVILQMRLLRLGDVARFPFIEPPDPR 396

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I    R L + GA+D K+ +T LG  L+ LP+D  LG+MLV  +    +  +LL+  AL
Sbjct: 397 LIRDGFRLLEELGAVDKKQDLTALGYQLARLPLDPRLGRMLVAATDRGVLAEVLLIVSAL 456

Query: 928 NFGAIDSKER 937
                D +ER
Sbjct: 457 --AVQDPRER 464



 Score = 80.1 bits (196), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLP+ + K +I   +   +VVIIAG+TG GK+TQ+P+ L+  G      I  TQPRR+A 
Sbjct: 13  SLPINERKADIEHLIQSNQVVIIAGETGSGKTTQLPKMLLSMGRGESGLIGHTQPRRLAA 72

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R++ E   +  + VGYQ+RF     ++T++  +T+G+LL
Sbjct: 73  RSVAARISSELGCELGSAVGYQVRFTDQVTDQTRLKLMTDGILL 116



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 42/63 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DFLLG ++ LL    ++K+I+ SATI++E F  
Sbjct: 117  AEIQHDRLLKRYDTLIIDEAHERSLNIDFLLGYLRRLLPKRPDLKVIITSATIDVERFSD 176

Query: 1174 YFN 1176
            YFN
Sbjct: 177  YFN 179


>gi|451972288|ref|ZP_21925498.1| ATP-dependent helicase HrpA [Vibrio alginolyticus E0666]
 gi|451931798|gb|EMD79482.1| ATP-dependent helicase HrpA [Vibrio alginolyticus E0666]
          Length = 1328

 Score =  266 bits (679), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 251/437 (57%), Gaps = 20/437 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 211 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 270

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 271 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 323

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 324 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHTGRRIVLATN 379

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 380 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 439

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 440 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 499

Query: 609 TQHGAIDS-----KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI+S     K+R+TS+GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 500 EELGAINSEVKDPKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMIIAAALSIQD 559

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIEE 720
           P    + +    +   +       D LT +N + E++  ++  + S   +K CK+  +  
Sbjct: 560 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNLW-EYIQKQQKALSSNQFRKQCKQDYLNY 618

Query: 721 QRFYEVTKLRSQFKQVL 737
            R  E   +  Q  Q +
Sbjct: 619 LRVREWQDVYFQIHQSM 635



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 84/135 (62%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 431 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 490

Query: 868 NIESSVRSLTQHGAIDS-----KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI+S     K+R+T++GR L+ LP+D  L +M++    +  +  +++
Sbjct: 491 NIQDGVRLLEELGAINSEVKDPKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMI 550

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 551 IAAALSIQ--DPRER 563



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 108 LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 167

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 168 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 210



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 211  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 270

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 271  HFNNAPIIEVSGRT 284



 Score = 40.4 bits (93), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 211 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 244


>gi|393910676|gb|EJD75992.1| CBR-MOG-1 protein [Loa loa]
          Length = 1133

 Score =  265 bits (678), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 250/435 (57%), Gaps = 24/435 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E  +D  L  Y  +++DE HER L+ D L G+++ ++   A++K+I+ SAT++ E F  +
Sbjct: 545 ECLSDPDLDQYSAIIMDEAHERSLNTDVLFGLLRDVIAHRADLKLIVTSATMDAEKFANF 604

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRI-LSIIDKKYPRTERGDV 428
           F        +PGR +P+++ +H    +D      +     +R+ L   D        GD+
Sbjct: 605 FGGHTPCFTIPGRTFPVEM-FHARTPMDDYVDAAVKQA--VRVHLGGTD--------GDI 653

Query: 429 LIFMSGISEI---SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           LIFM G  +I     +++   E  +++    VLP++S L  + Q ++F  AP G+RKCIV
Sbjct: 654 LIFMPGQEDIEVTCGMIKNQLEELDEAPPLAVLPIYSQLPSDLQAKIFQKAPGGIRKCIV 713

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETS+T+DGI FV+D G  K   ++    M  LQ F IS+ASA QR GRAGRTGPG
Sbjct: 714 ATNIAETSLTVDGILFVIDPGYCKLKVFNPRIGMDALQVFPISQASANQRSGRAGRTGPG 773

Query: 546 VCYRLYSEEQYS---LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
            C+RLY+E Q+    L+A  + PEI+R ++ +++L L  +G+ D+ KF F++APP +N+ 
Sbjct: 774 QCFRLYTERQFKEEMLVA--TVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQDNML 831

Query: 603 SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           +S+  L   GA+D+  R+T LGR + + P+D  L KML+        D VL++ ++LSV 
Sbjct: 832 NSMYQLWTLGALDNIGRLTDLGRKMVEFPLDPTLSKMLIVSEGMGCSDEVLTVVSMLSVP 891

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
           + F     R+ D +  +++ +    D LT LN Y +W   K     S KWC    I  + 
Sbjct: 892 AIFFRPKGREEDADAKKEKFQVPESDHLTFLNVYLQWRLHK----YSTKWCNDNFIHTKA 947

Query: 723 FYEVTKLRSQFKQVL 737
             +V ++R+Q K ++
Sbjct: 948 MKKVREVRAQLKDIM 962



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 3/118 (2%)

Query: 25  FSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQ 81
           F+    I+E +  LPV   +Q+++  +    VVII G+TG GK+TQ+ QYL++ G   F 
Sbjct: 428 FALKKSIKEQREYLPVFAVRQKMLSVIADNSVVIIVGETGSGKTTQLAQYLLEDGYGNFG 487

Query: 82  RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            I CTQPRR+A +S++KRVA E   +     GY IRFE    E T+I ++T+G+LLR+
Sbjct: 488 LIGCTQPRRVAAMSVAKRVAEEMDVELGQECGYAIRFEDCTSENTRIKYMTDGILLRE 545



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 79/128 (61%), Gaps = 5/128 (3%)

Query: 808 SRTGPGVCYRLYSEEQYS---LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 864
            RTGPG C+RLY+E Q+    L+A  + PEI+R ++ +++L L  +G+ D+ KF F++AP
Sbjct: 768 GRTGPGQCFRLYTERQFKEEMLVA--TVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAP 825

Query: 865 PAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLD 924
           P +N+ +S+  L   GA+D+  R+T LGR + + P+D  L KML+        D +L + 
Sbjct: 826 PQDNMLNSMYQLWTLGALDNIGRLTDLGRKMVEFPLDPTLSKMLIVSEGMGCSDEVLTVV 885

Query: 925 LALNFGAI 932
             L+  AI
Sbjct: 886 SMLSVPAI 893



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPKQV---QVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            +E G  +   D      R+K+    +   +  +D  L  Y  +++DE HER L+ D L G
Sbjct: 516  QECGYAIRFEDCTSENTRIKYMTDGILLRECLSDPDLDQYSAIIMDEAHERSLNTDVLFG 575

Query: 1146 VIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            +++ ++   A++K+I+ SAT++ E F  +F
Sbjct: 576  LLRDVIAHRADLKLIVTSATMDAEKFANFF 605


>gi|269968550|ref|ZP_06182554.1| ATP-dependent helicase HrpA [Vibrio alginolyticus 40B]
 gi|269826834|gb|EEZ81164.1| ATP-dependent helicase HrpA [Vibrio alginolyticus 40B]
          Length = 1356

 Score =  265 bits (678), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 251/437 (57%), Gaps = 20/437 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 239 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 298

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 299 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 351

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 352 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHTGRRIVLATN 407

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 408 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 467

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 468 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 527

Query: 609 TQHGAIDS-----KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI+S     K+R+TS+GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 528 EELGAINSEVKDPKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMIIAAALSIQD 587

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIEE 720
           P    + +    +   +       D LT +N + E++  ++  + S   +K CK+  +  
Sbjct: 588 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNLW-EYIQKQQKALSSNQFRKQCKQDYLNY 646

Query: 721 QRFYEVTKLRSQFKQVL 737
            R  E   +  Q  Q +
Sbjct: 647 LRVREWQDVYFQIHQSM 663



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 84/134 (62%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   N
Sbjct: 460 RVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRN 519

Query: 869 IESSVRSLTQHGAIDS-----KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI+S     K+R+T++GR L+ LP+D  L +M++    +  +  ++++
Sbjct: 520 IQDGVRLLEELGAINSEVKDPKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMII 579

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 580 AAALSIQ--DPRER 591



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 136 LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 195

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 196 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 238



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 239  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 298

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 299  HFNNAPIIEVSGRT 312



 Score = 40.4 bits (93), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 239 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 272


>gi|149375224|ref|ZP_01892996.1| ATP-dependent helicase HrpA [Marinobacter algicola DG893]
 gi|149360588|gb|EDM49040.1| ATP-dependent helicase HrpA [Marinobacter algicola DG893]
          Length = 1308

 Score =  265 bits (678), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 170/482 (35%), Positives = 264/482 (54%), Gaps = 14/482 (2%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           EV  D FL  YD L++DE HER L+ DFL+G ++ LL    ++K+I+ SATI +E F  +
Sbjct: 187 EVQHDRFLDRYDTLIIDEAHERSLNIDFLMGYLRQLLPKRPDLKVIITSATIEVERFSQF 246

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTER---G 426
           FN  A +I+V GR YP+ + Y P+   +  + +    G  +R +  I++ + R E+   G
Sbjct: 247 FNG-APVIEVSGRTYPVDVRYRPLTGDEDDRDQGWTDG-VLRAMEEIEQ-HERAEKQPPG 303

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           DVL+F+ G  EI S+ +  +  + +     VLPL+S LS +EQ+R+F     G R+ ++S
Sbjct: 304 DVLVFLPGEREIRSLSKVLRHADLRHTE--VLPLYSRLSNQEQNRIFQ-GHRG-RRIVLS 359

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GIR+V+D+G  +   Y V +K+  L    +S+ASA QR GR GR  PG+
Sbjct: 360 TNVAETSLTVPGIRYVIDTGVARISRYSVRSKIQRLPIEPVSQASANQRAGRCGRVAPGI 419

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C+RLY E  +    EY+ PEI R ++ S++L +   GLGD+R FPFLE P    I    +
Sbjct: 420 CFRLYDETDFINRPEYTDPEILRTNLASVILQMTTSGLGDIRHFPFLEPPDRRLINDGYK 479

Query: 607 SLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFT 666
            L + GA+D K RVT LGR ++ LP+D  L +MLV  S    +   L + A LSVQ P  
Sbjct: 480 LLEELGAVDDKRRVTHLGRTMARLPLDPRLARMLVTSSEQGSLAETLVIIAGLSVQDPRE 539

Query: 667 NRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFY 724
               +    + A         D LT+LN +  +   +++  ++  KK C++  +   R  
Sbjct: 540 RPQDKQQAADQAHAPFNDKESDFLTLLNIWNFYEEQRQELSQNQLKKVCQKSFLSWMRMR 599

Query: 725 EVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRK 784
           E   +  Q   +  +  L  +     AS  S  +A+  G +  +     KK   A + RK
Sbjct: 600 EWRDIHRQLTLICREQKLKLNRDA--ASYESLHKAILAGLLGQVAVKLEKKEYLATRNRK 657

Query: 785 ML 786
           ++
Sbjct: 658 VM 659



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 74/130 (56%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PG+C+RLY E  +    EY+ PEI R ++ S++L +   GLGD+R FPFLE P   
Sbjct: 413 GRVAPGICFRLYDETDFINRPEYTDPEILRTNLASVILQMTTSGLGDIRHFPFLEPPDRR 472

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I    + L + GA+D K RVT LGR ++ LP+D  L +MLV  S    +   L++   L
Sbjct: 473 LINDGYKLLEELGAVDDKRRVTHLGRTMARLPLDPRLARMLVTSSEQGSLAETLVIIAGL 532

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 533 SVQ--DPRER 540



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIA 92
           +SLPV++   +I + + + +VVIIAG+TG GK+TQIP+  + +G      I  TQPRRIA
Sbjct: 81  SSLPVSERVDDIREAIEQNQVVIIAGETGSGKTTQIPKICMNSGRGIRGLIGHTQPRRIA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E   Q    VGYQ+RF     +++++  +T+G+LL
Sbjct: 141 ARTVAGRIAEELGEQTGGQVGYQVRFTDTTSDQSRVKVMTDGILL 185



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 46/73 (63%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            +V  D FL  YD L++DE HER L+ DFL+G ++ LL    ++K+I+ SATI +E F  +
Sbjct: 187  EVQHDRFLDRYDTLIIDEAHERSLNIDFLMGYLRQLLPKRPDLKVIITSATIEVERFSQF 246

Query: 1175 FNRIAKDLLSGST 1187
            FN      +SG T
Sbjct: 247  FNGAPVIEVSGRT 259



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
           +V  D FL  YD LI+DE HER L  DFL+G +
Sbjct: 187 EVQHDRFLDRYDTLIIDEAHERSLNIDFLMGYL 219


>gi|312082640|ref|XP_003143528.1| sex determination protein MOG-1 [Loa loa]
          Length = 936

 Score =  265 bits (678), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 155/435 (35%), Positives = 250/435 (57%), Gaps = 24/435 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E  +D  L  Y  +++DE HER L+ D L G+++ ++   A++K+I+ SAT++ E F  +
Sbjct: 348 ECLSDPDLDQYSAIIMDEAHERSLNTDVLFGLLRDVIAHRADLKLIVTSATMDAEKFANF 407

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRI-LSIIDKKYPRTERGDV 428
           F        +PGR +P+++ +H    +D      +     +R+ L   D        GD+
Sbjct: 408 FGGHTPCFTIPGRTFPVEM-FHARTPMDDYVDAAVKQA--VRVHLGGTD--------GDI 456

Query: 429 LIFMSGISEI---SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           LIFM G  +I     +++   E  +++    VLP++S L  + Q ++F  AP G+RKCIV
Sbjct: 457 LIFMPGQEDIEVTCGMIKNQLEELDEAPPLAVLPIYSQLPSDLQAKIFQKAPGGIRKCIV 516

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETS+T+DGI FV+D G  K   ++    M  LQ F IS+ASA QR GRAGRTGPG
Sbjct: 517 ATNIAETSLTVDGILFVIDPGYCKLKVFNPRIGMDALQVFPISQASANQRSGRAGRTGPG 576

Query: 546 VCYRLYSEEQYS---LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
            C+RLY+E Q+    L+A  + PEI+R ++ +++L L  +G+ D+ KF F++APP +N+ 
Sbjct: 577 QCFRLYTERQFKEEMLVA--TVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQDNML 634

Query: 603 SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           +S+  L   GA+D+  ++T LGR + + P+D  L KML+        D VL++ ++LSV 
Sbjct: 635 NSMYQLWTLGALDNIGQLTDLGRKMVEFPLDPTLSKMLIVSEGMGCSDEVLTVVSMLSVP 694

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
           + F     R+ D +  +++ +    D LT LN Y +W   K     S KWC    I  + 
Sbjct: 695 AIFFRPKGREEDADAKKEKFQVPESDHLTFLNVYLQWRLHK----YSTKWCNDNFIHTKA 750

Query: 723 FYEVTKLRSQFKQVL 737
             +V ++R+Q K ++
Sbjct: 751 MKKVREVRAQLKDIM 765



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 3/118 (2%)

Query: 25  FSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQ 81
           F+    I+E +  LPV   +Q+++  +    VVII G+TG GK+TQ+ QYL++ G   F 
Sbjct: 231 FALKKSIKEQREYLPVFAVRQKMLSVIADNSVVIIVGETGSGKTTQLAQYLLEDGYGNFG 290

Query: 82  RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            I CTQPRR+A +S++KRVA E   +     GY IRFE    E T+I ++T+G+LLR+
Sbjct: 291 LIGCTQPRRVAAMSVAKRVAEEMDVELGQECGYAIRFEDCTSENTRIKYMTDGILLRE 348



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 79/128 (61%), Gaps = 5/128 (3%)

Query: 808 SRTGPGVCYRLYSEEQYS---LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 864
            RTGPG C+RLY+E Q+    L+A  + PEI+R ++ +++L L  +G+ D+ KF F++AP
Sbjct: 571 GRTGPGQCFRLYTERQFKEEMLVA--TVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAP 628

Query: 865 PAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLD 924
           P +N+ +S+  L   GA+D+  ++T LGR + + P+D  L KML+        D +L + 
Sbjct: 629 PQDNMLNSMYQLWTLGALDNIGQLTDLGRKMVEFPLDPTLSKMLIVSEGMGCSDEVLTVV 688

Query: 925 LALNFGAI 932
             L+  AI
Sbjct: 689 SMLSVPAI 696



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPKQV---QVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            +E G  +   D      R+K+    +   +  +D  L  Y  +++DE HER L+ D L G
Sbjct: 319  QECGYAIRFEDCTSENTRIKYMTDGILLRECLSDPDLDQYSAIIMDEAHERSLNTDVLFG 378

Query: 1146 VIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            +++ ++   A++K+I+ SAT++ E F  +F
Sbjct: 379  LLRDVIAHRADLKLIVTSATMDAEKFANFF 408


>gi|419836240|ref|ZP_14359683.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-46B1]
 gi|421342854|ref|ZP_15793259.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-43B1]
 gi|423735139|ref|ZP_17708347.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-41B1]
 gi|424009071|ref|ZP_17752017.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-44C1]
 gi|395943371|gb|EJH54046.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-43B1]
 gi|408630308|gb|EKL02919.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-41B1]
 gi|408858105|gb|EKL97784.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-46B1]
 gi|408864721|gb|EKM04139.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-44C1]
          Length = 1309

 Score =  265 bits (678), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 256/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|229843892|ref|ZP_04464033.1| ATP-dependent RNA helicase HrpA [Haemophilus influenzae 6P18H1]
 gi|229812886|gb|EEP48574.1| ATP-dependent RNA helicase HrpA [Haemophilus influenzae 6P18H1]
          Length = 1304

 Score =  265 bits (678), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 170/493 (34%), Positives = 266/493 (53%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   GVC 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGVCI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K  +T +GR L+ LPVD  L KM++    F  +  ++ + + LS+
Sbjct: 473 EELGAFEMVRTKAGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN +      +K+  ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWYYLQEQQKELSKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   GVC RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGVCIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA +        K  +T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 465 IQDGIKLLEELGAFEMVRTKAGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  +LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVATRIAEELETELGDLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 41.6 bits (96), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 184 RKMLKADNAYEIEEEEEEEEGE------RLESMDANEVEFRLKHDPKQV-QVATDNFLSS 236
           R++     A  I EE E E G+      R     +++ + +L  D   + ++  D FL+ 
Sbjct: 137 RRIAARSVATRIAEELETELGDLVGYKVRFNDQISDDTQIKLMTDGILLAEIQNDRFLNQ 196

Query: 237 YDILILDEVHERHLYGDFLLGVI 259
           Y  LI+DE HER L  DF+LG +
Sbjct: 197 YSCLIIDEAHERSLNNDFILGYL 219


>gi|254521864|ref|ZP_05133919.1| ATP-dependent helicase HrpA [Stenotrophomonas sp. SKA14]
 gi|219719455|gb|EED37980.1| ATP-dependent helicase HrpA [Stenotrophomonas sp. SKA14]
          Length = 1360

 Score =  265 bits (677), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 156/431 (36%), Positives = 244/431 (56%), Gaps = 16/431 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+   F  
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTGRFAE 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYI---RILSIIDKKYPRTER 425
           +F+  A +I V GR +P+++ Y  +      + E  D G       I+S ID+      R
Sbjct: 240 HFDN-APVISVEGRTFPVEVRYRAL------EGEGEDQGERTVNDAIVSAIDEITRLDAR 292

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GDVLIF+ G  EI    ++ +    K +   VLPL++ LS ++QDRVF+  P   R+ ++
Sbjct: 293 GDVLIFLPGEREIRDAHQSLE--RRKYRNTEVLPLYARLSNQDQDRVFNPGPN--RRIVL 348

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QRKGR GR   G
Sbjct: 349 ATNVAETSLTVPRIRYVVDPGFARVKRYSPRNKLDRLHIEPISQASANQRKGRCGRIAEG 408

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG +  FPFLEAP    +    
Sbjct: 409 ICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEDFPFLEAPDERAVADGW 468

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
           + LT+ GAID++ R+T++G+ ++ LPVD+ L +MLV       +  +L +A+ L +Q P 
Sbjct: 469 QQLTELGAIDAERRMTTVGKQMARLPVDVKLARMLVAAQAAGCLRPMLVIASFLGIQDPR 528

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRF 723
              A      ++A  +      + + VL  +  +    +D  +SK   WC R  +   R 
Sbjct: 529 ERPAEARGAADSAHAQFADGRSEFVGVLRLWDAYRQAHEDLTQSKLRDWCGRHFLGFLRM 588

Query: 724 YEVTKLRSQFK 734
            E  +L  Q +
Sbjct: 589 REWRELHRQLR 599



 Score =  103 bits (257), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 79/130 (60%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 403 GRIAEGICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEDFPFLEAPDER 462

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + LT+ GAID++ R+TT+G+ ++ LPVD+ L +MLV       +  ML+  +A 
Sbjct: 463 AVADGWQQLTELGAIDAERRMTTVGKQMARLPVDVKLARMLVAAQAAGCLRPMLV--IAS 520

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 521 FLGIQDPRER 530



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LP+A+    II+ +   +VV+IAG+TG GK+TQ+P+  + AG  +   I CTQPRRIA  
Sbjct: 77  LPIAREADAIIELIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGQAGMIGCTQPRRIAAR 136

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ RVA E  S+   LVGYQ+RF     + ++I F+T+G+LL
Sbjct: 137 AVASRVAQELQSELGQLVGYQVRFNDKVSDDSRIKFMTDGILL 179



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+   F  
Sbjct: 180  AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTGRFAE 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 44.3 bits (103), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LS+YD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSNYDTIIVDEAHERSLNIDFLLGYL 213


>gi|145627971|ref|ZP_01783772.1| ATP-dependent helicase [Haemophilus influenzae 22.1-21]
 gi|144979746|gb|EDJ89405.1| ATP-dependent helicase [Haemophilus influenzae 22.1-21]
          Length = 1305

 Score =  265 bits (677), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 169/493 (34%), Positives = 267/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERHIQDGVKLL 472

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  ++ + + LS+
Sbjct: 473 EELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN ++     +K+  ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + +  L   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMSL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERH 464

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  V+ L + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 465 IQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|68057827|gb|AAX88080.1| ATP-dependent helicase HrpA homolog [Haemophilus influenzae
           86-028NP]
          Length = 1302

 Score =  265 bits (677), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 168/493 (34%), Positives = 269/493 (54%), Gaps = 32/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D+ + +         IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEDDQDQLQG--------ILNAVDELQAEG-RGDI 295

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 296 LIFMNGEREIRDTAEALQKQNLKYTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 351

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 352 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 411

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 412 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 471

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  ++ + + LS+
Sbjct: 472 EELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSI 531

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN +      +K+  ++  ++ C++  + 
Sbjct: 532 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWYYLQEQQKELSKNQFRRQCQKDFLN 591

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 592 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 644

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 645 --KQQYLGARNAH 655



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 404 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 463

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 464 IQDGIKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 523

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 524 IIVSALSIQ--DPRER 537



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  +LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGDLVGYKVRFNDQISDNTQIKLMTDGILL 185



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 184 RKMLKADNAYEIEEEEEEEEGE------RLESMDANEVEFRLKHDPKQV-QVATDNFLSS 236
           R++     A  I EE E E G+      R     ++  + +L  D   + ++  D FL+ 
Sbjct: 137 RRIAARSVAARIAEELETELGDLVGYKVRFNDQISDNTQIKLMTDGILLAEIQNDRFLNQ 196

Query: 237 YDILILDEVHERHLYGDFLLGVI 259
           Y  LI+DE HER L  DF+LG +
Sbjct: 197 YSCLIIDEAHERSLNNDFILGYL 219


>gi|384424499|ref|YP_005633857.1| ATP-dependent helicase HrpA [Vibrio cholerae LMA3984-4]
 gi|327484052|gb|AEA78459.1| ATP-dependent helicase HrpA [Vibrio cholerae LMA3984-4]
          Length = 1309

 Score =  265 bits (677), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 256/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|322701513|gb|EFY93262.1| DEAD/DEAH box helicase [Metarhizium acridum CQMa 102]
          Length = 1349

 Score =  265 bits (677), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 167/479 (34%), Positives = 265/479 (55%), Gaps = 41/479 (8%)

Query: 299  GVIKCLLHSTVEVAADNFLSSYDV--LVLDEIHERHLHGDFLLGVIKCLLHSTAEV-KII 355
            GV+   L ++     D   S  DV  +V+DE+HER L  DFLL +I+ ++ +  ++ K+I
Sbjct: 687  GVLLRRLQTSGGRVEDVVASLADVSHVVIDEVHERSLDTDFLLNLIRDVMRTKKDMLKLI 746

Query: 356  LMSATINIELFHTYFNR---IAKIIKVPGRLYPIQLEYH--PIVELDRTKSEKLDPG--- 407
            LMSAT++   F  YF         +++ GR +P+  EY+   ++ +     EK D G   
Sbjct: 747  LMSATLDASTFMDYFATEGLSVGCVEIAGRTFPVD-EYYLDDVIRMTGFSVEKPDAGFIT 805

Query: 408  ------------------PYIRILSIIDKKYPRTERGD-VLIFMSGISEISSIVRAAQEY 448
                                +  +  ID +    ++ D +LIF+ G+ EI+      +  
Sbjct: 806  DESMGKIIQKLGHRINYTLLVDAVKAIDYELSYEKKPDGILIFLPGVGEINHACNLLRSI 865

Query: 449  NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKV 508
            N       VLPLH++L   EQ RVF   P G RK +V+TN+AETSITID I  V+DSGKV
Sbjct: 866  NSLH----VLPLHASLETREQKRVFSKPPPGKRKVVVATNVAETSITIDDIVAVIDSGKV 921

Query: 509  KEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIR 568
            KE S+D    M  L+E W S+A+ +QR+GRAGR   G CY+LY+E     +AE   PEIR
Sbjct: 922  KETSFDAQNNMRKLEETWASRAACKQRRGRAGRVQEGRCYKLYTENLERQMAERPEPEIR 981

Query: 569  RVSIDSLLLSLVCMGLGDVRKFPFLEAPP--AENIESSVRSLTQHGAIDSKERVTSLGRF 626
            RV ++ L LS+  MG+ DV +F      P  A+ IE +++ L + GA+D  E +T++G+ 
Sbjct: 982  RVPLEQLCLSVRAMGMRDVARFLGRSPTPPDAKAIEEAIKLLRRMGALDGDE-LTAMGQQ 1040

Query: 627  LSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNH 686
            L+ LP D+  GK++VFG++F  +D  +++AA+LS +SPF     +  +   AR    S +
Sbjct: 1041 LAMLPADLRCGKLMVFGAIFGCLDDCVTIAAILSTRSPFLAPQEKREESRQARMRFFSGN 1100

Query: 687  GDPLTVLNAYKEWLGVKKDRVRSKK---WCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
            GD +T + A++EW  + +DR+  ++   +C    +  Q   +++  +SQ+ + L + GL
Sbjct: 1101 GDLITDMEAFREWDSLMRDRLPQRQVRSFCDENFLSYQTLSDISNTKSQYYEALNEIGL 1159



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 79/143 (55%), Gaps = 9/143 (6%)

Query: 9   WKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKS 68
           W    RT  ++ Q+++ S    +   +  LP  Q +++I+ TV    V II+G+TG GKS
Sbjct: 555 WIPDFRTKEEWLQRQESSAWKDMLSKRQRLPAWQMREKIVKTVKDNHVTIISGETGSGKS 614

Query: 69  TQIPQYLVQ-------AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKH 121
           TQ  Q+++         G   +  TQPRRI+ + L+ RVA E  S+    VGY IR E  
Sbjct: 615 TQSVQFILDDLYGKGVGGCANMIVTQPRRISALGLADRVAEERCSKVGGEVGYIIRGESR 674

Query: 122 RREKTKIVFITEGLLLR--QDSG 142
           + + T+I F+T G+LLR  Q SG
Sbjct: 675 QSKDTRITFVTAGVLLRRLQTSG 697



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 69/112 (61%), Gaps = 3/112 (2%)

Query: 809  RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP--A 866
            R   G CY+LY+E     +AE   PEIRRV ++ L LS+  MG+ DV +F      P  A
Sbjct: 954  RVQEGRCYKLYTENLERQMAERPEPEIRRVPLEQLCLSVRAMGMRDVARFLGRSPTPPDA 1013

Query: 867  ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQID 918
            + IE +++ L + GA+D  E +T +G+ L+ LP D+  GK++VFG++F  +D
Sbjct: 1014 KAIEEAIKLLRRMGALDGDE-LTAMGQQLAMLPADLRCGKLMVFGAIFGCLD 1064



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 128/326 (39%), Gaps = 69/326 (21%)

Query: 1023 LDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN---- 1078
            + L    GA+D  E +T++G+ L+ LP D+  GK++VFG++F  +D  + +   L+    
Sbjct: 1020 IKLLRRMGALDGDE-LTAMGQQLAMLPADLRCGKLMVFGAIFGCLDDCVTIAAILSTRSP 1078

Query: 1079 FVHHSEEEEEEEAGERLESMDANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHL 1138
            F+   E+ EE           + +   R       +    + F   +D L+ D + +R +
Sbjct: 1079 FLAPQEKREE-----------SRQARMRFFSGNGDLITDMEAF-REWDSLMRDRLPQRQV 1126

Query: 1139 HG----DFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDV 1194
                  +FL       L   +  K     A   I L   + +        G+T+ S ++V
Sbjct: 1127 RSFCDENFL---SYQTLSDISNTKSQYYEALNEIGLAPRFRS-------DGATSNSVRNV 1176

Query: 1195 TILKVILASGLYPQVA------------IGDEFNTSETVKEALFHCKDKGFVSLHPFS-V 1241
             +++ ++AS   PQ+A            +          +   +  ++ G V +HP S V
Sbjct: 1177 QLIRALIASAFTPQIARIQYPDKKYASSMSGAMELDPEARSIKYFNQENGRVFVHPSSTV 1236

Query: 1242 FTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQ 1301
            F SQ                          S     + Y S++ TSK F+ +        
Sbjct: 1237 FDSQG------------------------FSGNAAYMAYFSIISTSKIFIRDLTPFNVF- 1271

Query: 1302 TLLLFSSAIHTNSDFTRLVFDSWIEV 1327
            TLLLFS  I  ++    L+ D W+ +
Sbjct: 1272 TLLLFSGPIELDTLGRGLLVDGWLRL 1297



 Score = 48.1 bits (113), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 1128 LVLDEIHERHLHGDFLLGVIKCLLHSTAEV-KIILMSATINIELFHTYF 1175
            +V+DE+HER L  DFLL +I+ ++ +  ++ K+ILMSAT++   F  YF
Sbjct: 713  VVIDEVHERSLDTDFLLNLIRDVMRTKKDMLKLILMSATLDASTFMDYF 761


>gi|422910493|ref|ZP_16945132.1| ATP-dependent helicase HrpA [Vibrio cholerae HE-09]
 gi|341633411|gb|EGS58219.1| ATP-dependent helicase HrpA [Vibrio cholerae HE-09]
          Length = 1309

 Score =  265 bits (677), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 256/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|168060948|ref|XP_001782454.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666064|gb|EDQ52729.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1297

 Score =  265 bits (676), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 247/437 (56%), Gaps = 24/437 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y V+++DE HER L+ D L G++K ++    + K+I+ SAT+N + F  +
Sbjct: 702  ETLRDADLNQYRVVIMDEAHERSLNTDVLFGILKQVVARRRDFKLIVTSATLNAQKFSNF 761

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F  +  +  +PGR +P+Q+ +       +T  E        + +SI     P    GD+L
Sbjct: 762  FGSVP-VFNIPGRTFPVQILF------SKTPCEDYVEAAVKQAMSIHITCPP----GDIL 810

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG--------WIVLPLHSTLSLEEQDRVFHYAPEGLR 481
            IFM+G  EI  +     E  E  +           +LP++S L  + Q ++F  A  G R
Sbjct: 811  IFMTGQDEIECVCFNLAERMEALEASSAKPPTPLAILPIYSQLPSDLQAKIFQKAENGAR 870

Query: 482  KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
            KCIV+TNIAETS+T+DGI +V+DSG  K   Y+    M  LQ F  S+A+A+QR GRAGR
Sbjct: 871  KCIVATNIAETSLTVDGIFYVIDSGYGKIKVYNPRMGMDALQVFPCSRAAADQRAGRAGR 930

Query: 542  TGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 600
            TGPG CYRLY+E  Y + + +   PEI+R ++ +++L L  + + ++ +F F++ PP EN
Sbjct: 931  TGPGTCYRLYTETAYQNEMLQNPVPEIQRTNLGNVVLLLKSLNIDNLLEFDFMDPPPQEN 990

Query: 601  IESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            I +S+  L   GA+D+  R+T LGR + + P+D PLGKML+ G     +D VL++ ++LS
Sbjct: 991  ILNSMYQLWVLGALDNVGRLTQLGRKMVEFPLDPPLGKMLLMGHQLKCMDEVLTIVSMLS 1050

Query: 661  VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEE 720
            V S F     R  + + AR++      D LT+LN Y++W   K ++ R   WC    +  
Sbjct: 1051 VPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQW---KSNQYRG-DWCNDHFLHV 1106

Query: 721  QRFYEVTKLRSQFKQVL 737
            +   +  ++RSQ   +L
Sbjct: 1107 KGLRKAREVRSQLLDIL 1123



 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 17/140 (12%)

Query: 17  LDFKQKEKFSTLMK--------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGD 62
           +DFK+  KF + MK              I E +  LP+   + E++  + + +VV++ G+
Sbjct: 563 VDFKENAKFGSHMKEKGEAASDFSKSKSIIEQRQYLPIFSVRDELLQVIRENQVVVVVGE 622

Query: 63  TGCGKSTQIPQYLVQAG---FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE 119
           TG GK+TQ+ QYL + G   F  I CTQPRR+A +S++KRV+ E   +  + VGY IRFE
Sbjct: 623 TGSGKTTQMTQYLHEDGQTTFGMIGCTQPRRVAAMSVAKRVSEEMECELGDKVGYAIRFE 682

Query: 120 KHRREKTKIVFITEGLLLRQ 139
                 T I ++T+G+LLR+
Sbjct: 683 DVTGPNTIIKYMTDGVLLRE 702



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 75/116 (64%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y + + +   PEI+R ++ +++L L  + + ++ +F F++ PP E
Sbjct: 930  RTGPGTCYRLYTETAYQNEMLQNPVPEIQRTNLGNVVLLLKSLNIDNLLEFDFMDPPPQE 989

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            NI +S+  L   GA+D+  R+T LGR + + P+D PLGKML+ G     +D +L +
Sbjct: 990  NILNSMYQLWVLGALDNVGRLTQLGRKMVEFPLDPPLGKMLLMGHQLKCMDEVLTI 1045



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 41/69 (59%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  L+ Y V+++DE HER L+ D L G++K ++    + K+I+ SAT+N + F  +F  +
Sbjct: 706  DADLNQYRVVIMDEAHERSLNTDVLFGILKQVVARRRDFKLIVTSATLNAQKFSNFFGSV 765

Query: 1179 AKDLLSGST 1187
                + G T
Sbjct: 766  PVFNIPGRT 774



 Score = 44.3 bits (103), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 1029 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML----LLDLALNFVHHSE 1084
             GA+D+  R+T LGR + + P+D PLGKML+ G     +D +L    +L +   F    +
Sbjct: 1001 LGALDNVGRLTQLGRKMVEFPLDPPLGKMLLMGHQLKCMDEVLTIVSMLSVPSVFFRPKD 1060

Query: 1085 EEEEEEA 1091
              EE +A
Sbjct: 1061 RAEESDA 1067



 Score = 43.5 bits (101), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 979  FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1023
             GA+D+  R+T LGR + + P+D PLGKML+ G     +D +L +
Sbjct: 1001 LGALDNVGRLTQLGRKMVEFPLDPPLGKMLLMGHQLKCMDEVLTI 1045


>gi|422307230|ref|ZP_16394396.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1035(8)]
 gi|408622590|gb|EKK95568.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1035(8)]
          Length = 1309

 Score =  265 bits (676), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 256/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 65/103 (63%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF      +T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISYQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|161761270|ref|YP_248740.2| ATP-dependent RNA helicase HrpA [Haemophilus influenzae 86-028NP]
          Length = 1278

 Score =  265 bits (676), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 168/493 (34%), Positives = 269/493 (54%), Gaps = 32/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 162 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 221

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D+ + +         IL+ +D+      RGD+
Sbjct: 222 HFNN-APIIEVSGRTYPVEVRYRPVVEDDQDQLQG--------ILNAVDELQAEG-RGDI 271

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 272 LIFMNGEREIRDTAEALQKQNLKYTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 327

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 328 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 387

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 388 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 447

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  ++ + + LS+
Sbjct: 448 EELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSI 507

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN +      +K+  ++  ++ C++  + 
Sbjct: 508 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWYYLQEQQKELSKNQFRRQCQKDFLN 567

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 568 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 620

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 621 --KQQYLGARNAH 631



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 380 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 439

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 440 IQDGIKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 499

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 500 IIVSALSIQ--DPRER 513



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 58  SLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 117

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  +LVGY++RF     + T+I  +T+G+LL
Sbjct: 118 RSVAARIAEELETELGDLVGYKVRFNDQISDNTQIKLMTDGILL 161



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 162  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 221

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 222  HFNNAPIIEVSGRT 235



 Score = 40.8 bits (94), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 184 RKMLKADNAYEIEEEEEEEEGE------RLESMDANEVEFRLKHDPKQV-QVATDNFLSS 236
           R++     A  I EE E E G+      R     ++  + +L  D   + ++  D FL+ 
Sbjct: 113 RRIAARSVAARIAEELETELGDLVGYKVRFNDQISDNTQIKLMTDGILLAEIQNDRFLNQ 172

Query: 237 YDILILDEVHERHLYGDFLLGVI 259
           Y  LI+DE HER L  DF+LG +
Sbjct: 173 YSCLIIDEAHERSLNNDFILGYL 195


>gi|220933441|ref|YP_002512340.1| ATP-dependent helicase HrpA [Thioalkalivibrio sulfidophilus
           HL-EbGr7]
 gi|219994751|gb|ACL71353.1| ATP-dependent helicase HrpA [Thioalkalivibrio sulfidophilus
           HL-EbGr7]
          Length = 1290

 Score =  265 bits (676), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 152/436 (34%), Positives = 241/436 (55%), Gaps = 12/436 (2%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+ +D  L +YD L++DE HER L+ DFLLG +K L+    ++K+I+ SAT++ +    
Sbjct: 176 AELRSDPDLRAYDTLIIDEAHERSLNIDFLLGYLKGLMPRRPDLKLIITSATLDPDRIAA 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A I +VPGR YP++  Y P+   D      L+      +L  +D+       GDV
Sbjct: 236 HFGE-APIYQVPGRTYPVETRYRPVQSEDEDSERDLNTA----LLEAVDELAAEGP-GDV 289

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+ G  EI     A ++++ +     +LPL++ LS  EQ++VF  AP   R+ +++TN
Sbjct: 290 LVFLPGEREIREAAEALRKHHPRHTE--ILPLYARLSATEQNKVF--APHTGRRVVLATN 345

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AET++T+ GIR+VVD+G  +   Y   +++  L    +S+ASA QR GR GR GPGVC 
Sbjct: 346 VAETALTVPGIRYVVDTGLARIARYAWRSRVQRLSLEPVSQASANQRSGRCGRLGPGVCI 405

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ ++L   ++ PEI R ++ S++L +  +GLGD   FPF++ P    I    + L
Sbjct: 406 RLYSEDDFTLRPAFTDPEILRSNLASVILQMANLGLGDPEHFPFVDPPDPRLIRDGFKLL 465

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GA+D + R+T  GR L+ LPVD  LG ML+       +  +L + A L++Q P    
Sbjct: 466 EELGAVDGRHRITGTGRKLARLPVDPRLGAMLLAAGREGAVVELLRIVAFLAIQDPRERP 525

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRFYEV 726
           A +    + A         D L+ L  + +W   ++   R+K   WC+   +   R  E 
Sbjct: 526 AEKRQAADEAHARYREAGSDFLSWLKLWDDWREQQRHLTRAKLRAWCREGFLSFIRMREW 585

Query: 727 TKLRSQFKQVLGDSGL 742
             L  Q +Q LG+ GL
Sbjct: 586 QDLHGQLRQALGELGL 601



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 64/102 (62%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R GPGVC RLYSE+ ++L   ++ PEI R ++ S++L +  +GLGD   FPF++ P   
Sbjct: 397 GRLGPGVCIRLYSEDDFTLRPAFTDPEILRSNLASVILQMANLGLGDPEHFPFVDPPDPR 456

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            I    + L + GA+D + R+T  GR L+ LPVD  LG ML+
Sbjct: 457 LIRDGFKLLEELGAVDGRHRITGTGRKLARLPVDPRLGAMLL 498



 Score = 80.1 bits (196), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 65/103 (63%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACI 94
           LPV++++ EI   + +  VV+I G+TG GK+TQ+P+  +  G      I  TQPRRIA  
Sbjct: 73  LPVSEHRDEIAKLISEHPVVVICGETGSGKTTQLPKICLALGRGVDGLIGHTQPRRIAAR 132

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  S+    VG+++RF  H R ++ I  +T+G+LL
Sbjct: 133 SVASRIAEELDSRIGEAVGFKVRFSDHTRPESYIKLMTDGILL 175



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 41/63 (65%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++ +D  L +YD L++DE HER L+ DFLLG +K L+    ++K+I+ SAT++ +    
Sbjct: 176  AELRSDPDLRAYDTLIIDEAHERSLNIDFLLGYLKGLMPRRPDLKLIITSATLDPDRIAA 235

Query: 1174 YFN 1176
            +F 
Sbjct: 236  HFG 238


>gi|424590877|ref|ZP_18030312.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1037(10)]
 gi|408033844|gb|EKG70362.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1037(10)]
          Length = 1309

 Score =  265 bits (676), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 159/450 (35%), Positives = 257/450 (57%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+V  D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLVGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALLKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQASDEKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|167380809|ref|XP_001735460.1| ATP-dependent RNA helicase [Entamoeba dispar SAW760]
 gi|165902547|gb|EDR28344.1| ATP-dependent RNA helicase, putative [Entamoeba dispar SAW760]
          Length = 947

 Score =  264 bits (675), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 153/433 (35%), Positives = 248/433 (57%), Gaps = 20/433 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L  Y VL+LDE HER +  D L G++K  +    E K+I+ SAT++   F  Y
Sbjct: 391 EYLIDKDLPQYKVLILDEAHERTVGIDILFGLLKETIKHRPEFKLIITSATLDANKFSIY 450

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           FN+ A II +PGR +P++  Y    E+D  +S           +  I K +     GD+L
Sbjct: 451 FNK-APIIYIPGRTFPVEKLYLEEPEMDYIQSG----------IETIMKIHLTQPPGDIL 499

Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
            F++G  EI      I    ++ +++    I LP++++LS E+Q ++F  AP   RKCI+
Sbjct: 500 FFLTGQEEIDFTCLLINEKIKKLDKRYPKLIALPIYASLSTEQQKKIFEPAPPFTRKCII 559

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETSITIDGI FVVDSG VK+  ++    M  L    IS+A A+QR GRAGRTGPG
Sbjct: 560 ATNIAETSITIDGIYFVVDSGFVKQKIHNPKLGMDQLLITPISQACADQRAGRAGRTGPG 619

Query: 546 VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            CYRLY+++ Y + +   + PEI+R ++  ++L L  +G+ +V  F +++ P    + S+
Sbjct: 620 KCYRLYTQKAYLNEMPIVTIPEIQRANLADIVLILKAIGINNVIDFDYMDPPMYNTLISA 679

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           +  L    A+D   ++T LGR +++ P++ PL KML+    F   + ++++ A LSV + 
Sbjct: 680 LHHLYAISALDDNGKLTQLGRKMAEFPLEPPLSKMLIVSEQFGCSEEIVTIVATLSVGNL 739

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F     ++ + +  +++L ++ GD LT+LN Y +W+  +K    S  WCK   I  +  Y
Sbjct: 740 FIRPKEKEEEADRRKRQLSNSAGDHLTMLNIYNDWIKNQK----SPSWCKENYINFRSLY 795

Query: 725 EVTKLRSQFKQVL 737
           +   +R+Q  +++
Sbjct: 796 KSEDIRNQLIKIM 808



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 76/110 (69%), Gaps = 3/110 (2%)

Query: 33  ETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPR 89
           E +  LP+   K ++++++ K +++I+ G+TGCGK+TQ+ QYL + G+ +   I CTQPR
Sbjct: 282 EKRKELPIYLMKNKLMESIKKNQIIILIGETGCGKTTQLTQYLDEEGYSKKGKIGCTQPR 341

Query: 90  RIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           R+A IS+S+RVA E   +    VGY IRFE    EKT+I ++T G+LLR+
Sbjct: 342 RVAAISVSQRVAEEMGVKLGEEVGYSIRFEDKTTEKTRIKYMTNGMLLRE 391



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+++ Y + +   + PEI+R ++  ++L L  +G+ +V  F +++ P   
Sbjct: 615 RTGPGKCYRLYTQKAYLNEMPIVTIPEIQRANLADIVLILKAIGINNVIDFDYMDPPMYN 674

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            + S++  L    A+D   ++T LGR +++ P++ PL KML+    F   + ++ +   L
Sbjct: 675 TLISALHHLYAISALDDNGKLTQLGRKMAEFPLEPPLSKMLIVSEQFGCSEEIVTIVATL 734

Query: 928 NFGAI 932
           + G +
Sbjct: 735 SVGNL 739



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  L  Y VL+LDE HER +  D L G++K  +    E K+I+ SAT++   F  YFN+ 
Sbjct: 395  DKDLPQYKVLILDEAHERTVGIDILFGLLKETIKHRPEFKLIITSATLDANKFSIYFNKA 454

Query: 1179 AKDLLSGST 1187
                + G T
Sbjct: 455  PIIYIPGRT 463


>gi|399217160|emb|CCF73847.1| unnamed protein product [Babesia microti strain RI]
          Length = 696

 Score =  264 bits (675), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 157/448 (35%), Positives = 248/448 (55%), Gaps = 27/448 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E  +DN LS Y ++VLDE HER +  D L G++K ++    ++K+++MSAT++   F +Y
Sbjct: 159 EAQSDNLLSKYGLIVLDEAHERTISTDILFGIVKGVIEKRTDLKVVVMSATLDAGKFRSY 218

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A+++ +PG++YP+++ Y    E D  KS        +  +  I +  P    GD+L
Sbjct: 219 FKH-AEVLMIPGKMYPVEIIYSNKPEKDYLKSA-------VAKVVEIHRNEPH---GDIL 267

Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F++G  EI +    I +A  EY++      V PL+S+L   +Q +VF       RKCI+
Sbjct: 268 VFLTGEEEIENGKLLIEKALLEYDDIDTQLFVFPLYSSLPSAQQSKVFETV--NGRKCIL 325

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           STNIAETS+TIDGI +V+D+G  K+  Y+   +M +L    ISKASA QR GRAGRT PG
Sbjct: 326 STNIAETSLTIDGIVYVIDTGFSKQKVYNPRTRMESLLVSQISKASANQRTGRAGRTRPG 385

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
            C+RLY+E  YS L E + PEI R +I S++LSL  +G+ D+  F F++ P  E +  ++
Sbjct: 386 KCFRLYTEFSYSTLVESTFPEILRSNISSVILSLKKLGIDDLVHFDFMDPPAPETMMRAL 445

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
             L   GA+D +  +TS G  ++D P++  L + L+    +    +VLS+ A+LSV   F
Sbjct: 446 EELNFLGALDDEGELTSKGSIMADFPIEPQLARTLIDSGHYKCTSSVLSIIAMLSVPYCF 505

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKK--------DRVRSKKWCKRRG 717
                R    +  + +     GD +T+LN + ++  VKK        D    K +C    
Sbjct: 506 IRPRDRANQADEMKSQFSHEGGDHMTLLNVFNDF--VKKCDVTPDYFDVDTCKSYCNTNF 563

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITD 745
           +  + F     +R Q  ++L    L+ D
Sbjct: 564 LNFRSFSNAINVRKQLDKLLHKHNLVND 591



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 73/113 (64%), Gaps = 3/113 (2%)

Query: 30  KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---GFQRIACT 86
           KI E + +LP    ++  ++ + +   +I+ G+TG GK+TQIPQ+ + A   G + IA T
Sbjct: 47  KILEVRKTLPAWMERERFLELLARNNTLILIGETGSGKTTQIPQFALSASWLGNKSIAVT 106

Query: 87  QPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           QPRR+A IS++ RV+ E   +  + VGY IRFE+     T++ F+T+G+LLR+
Sbjct: 107 QPRRVAAISVAARVSEELDVELGSFVGYSIRFEEKSCPSTRLKFLTDGMLLRE 159



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 62/101 (61%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT PG C+RLY+E  YS L E + PEI R +I S++LSL  +G+ D+  F F++ P  E 
Sbjct: 381 RTRPGKCFRLYTEFSYSTLVESTFPEILRSNISSVILSLKKLGIDDLVHFDFMDPPAPET 440

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
           +  ++  L   GA+D +  +T+ G  ++D P++  L + L+
Sbjct: 441 MMRALEELNFLGALDDEGELTSKGSIMADFPIEPQLARTLI 481



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 41/61 (67%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            +  +DN LS Y ++VLDE HER +  D L G++K ++    ++K+++MSAT++   F +Y
Sbjct: 159  EAQSDNLLSKYGLIVLDEAHERTISTDILFGIVKGVIEKRTDLKVVVMSATLDAGKFRSY 218

Query: 1175 F 1175
            F
Sbjct: 219  F 219


>gi|307245193|ref|ZP_07527284.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254140|ref|ZP_07535985.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258604|ref|ZP_07540339.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853837|gb|EFM86051.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862840|gb|EFM94789.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867261|gb|EFM99114.1| ATP-dependent RNA helicase hrpA [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 1313

 Score =  264 bits (675), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 154/449 (34%), Positives = 247/449 (55%), Gaps = 28/449 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR +P+++ Y PIVE D       D      IL+ +D+      RGD+
Sbjct: 249 HFNN-APIIEVSGRTFPVEVRYRPIVEED-------DQDQLQGILNAVDELQAEG-RGDI 299

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFMSG  EI     A Q+  ++ +   +LPL++ LS  EQ R+F   P GL + I++TN
Sbjct: 300 LIFMSGEREIRDTAEALQK--QELRFTEILPLYARLSTAEQQRIFQ--PSGLNRVILATN 355

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C 
Sbjct: 356 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTSEGICI 415

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++    ++ PEI R ++ S++L +  +GL D+  FPF++ P    ++  +R L
Sbjct: 416 RLYSEEDFNARPAFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQVQDGMRLL 475

Query: 609 TQHGAID-------------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
            + GAI              S  ++T +GR L+ LP+D  LG+M++  +    +  V+ +
Sbjct: 476 EELGAIGRGTLRVSSDVHSASLHKLTPIGRQLAQLPIDPRLGRMVIAAAQNGSLHEVMMI 535

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWC 713
            + LS+Q P      R    +   +       D L  +N +      +K+  ++  +K C
Sbjct: 536 VSALSIQDPRERPQERQQAADEKHRRFADKDSDFLAFVNLWHYIQTQQKELTKNQFRKQC 595

Query: 714 KRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
           ++  +   R  E   +  Q +  + + GL
Sbjct: 596 QKDFLNYLRVREWQDIYHQLRLAVREMGL 624



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 78/142 (54%), Gaps = 15/142 (10%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  G+C RLYSEE ++    ++ PEI R ++ S++L +  +GL D+  FPF++ P    
Sbjct: 408 RTSEGICIRLYSEEDFNARPAFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQ 467

Query: 869 IESSVRSLTQHGAID-------------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFH 915
           ++  +R L + GAI              S  ++T +GR L+ LP+D  LG+M++  +   
Sbjct: 468 VQDGMRLLEELGAIGRGTLRVSSDVHSASLHKLTPIGRQLAQLPIDPRLGRMVIAAAQNG 527

Query: 916 QIDTMLLLDLALNFGAIDSKER 937
            +  ++++  AL+    D +ER
Sbjct: 528 SLHEVMMIVSALSIQ--DPRER 547



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 11/122 (9%)

Query: 27  TLMKIRETQNS--------LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA 78
           T  + R+ Q+S        LPV+  ++EI+  + + +VV+IAG+TG GK+TQ+P+  ++ 
Sbjct: 67  TTFQARKAQHSSLAITYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLEL 126

Query: 79  GFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
           G      I  TQPRR+A  S++ R+A E  SQ    VGY++RF     E T +  +T+G+
Sbjct: 127 GRGVKGLIGHTQPRRLAARSVANRIAEELKSQMGETVGYKVRFNDQVGENTLVKLMTDGI 186

Query: 136 LL 137
           LL
Sbjct: 187 LL 188



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 189  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 248

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 249  HFNNAPIIEVSGRT 262



 Score = 45.1 bits (105), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++  D +L+ YD LI+DE HER L  DF+LG +   LH
Sbjct: 189 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILH 227


>gi|339233402|ref|XP_003381818.1| conserved hypothetical protein [Trichinella spiralis]
 gi|316979321|gb|EFV62128.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 1492

 Score =  264 bits (675), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 253/441 (57%), Gaps = 24/441 (5%)

Query: 317  LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
            L  Y V+++DE HER L+ D L G++K +L    ++K+I+ SAT++   F  +F  +  +
Sbjct: 607  LDHYSVVIMDEAHERSLNTDVLFGLLKEVLARRRDLKLIVTSATMDAAKFADFFGNVP-V 665

Query: 377  IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI-IDKKYPRTERGDVLIFMSGI 435
              +PGR +P+Q+ +  +V  D  ++         + +S+ +    P    GD+LIFM G 
Sbjct: 666  FNIPGRTFPVQVSHSKLVVDDHVQA------AVKQAVSVHLGAPLP----GDILIFMPGQ 715

Query: 436  SEI-SSIVRAAQEYNE--KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
             E+ ++    AQ  ++   +    VLP++S L  + Q R+FH A +  RKC+V+TNIAET
Sbjct: 716  EEVEATCALIAQRLDQLDDAPPLSVLPIYSQLPADLQARIFHRAVDNSRKCVVATNIAET 775

Query: 493  SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
            S+T+DGI FV+D G  K   ++    M  LQ F IS+ASA QR GRAGRTGPG CYRLY+
Sbjct: 776  SLTLDGILFVIDPGYCKLKVFNPRIGMDALQVFPISQASANQRSGRAGRTGPGQCYRLYT 835

Query: 553  EEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQH 611
            E QY   L   + PEI+R ++ +++L L  +G+ D+ KF F++APP +N+ +S+  L   
Sbjct: 836  ERQYEEELLPNTVPEIQRTNLSNVVLLLKSLGVDDLLKFHFMDAPPQDNLLNSMYQLWTL 895

Query: 612  GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFR 671
            GA+D+  ++T LGR + +LP+D  L KML+        + VL++ ++LSV S F     R
Sbjct: 896  GALDNTGQLTKLGRRMIELPLDPTLSKMLIVACEMGCSEEVLTVVSMLSVPSVFYRPKGR 955

Query: 672  DPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR--SKKWCKRRGIEEQRFYEVTKL 729
            + D +  R++ +    D LT+LN Y++W      RV   S  WC    +  +   +V ++
Sbjct: 956  EEDGDAKREKFQVPESDHLTLLNVYQQW------RVHRYSASWCADHFVHVKAMRKVREI 1009

Query: 730  RSQFKQVLGDSGLITDIPGPD 750
            R+Q K ++    +     G D
Sbjct: 1010 RAQLKDIMDQQKMPIQSCGTD 1030



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 74/120 (61%), Gaps = 4/120 (3%)

Query: 24  KFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR- 82
           +F+    ++E +  LPV   +Q +++ + +  VV++ G+TG GK+TQ+ QYL + G+   
Sbjct: 481 EFTQKKSLKEQREFLPVFAVRQRLLNVIRENSVVVVVGETGSGKTTQLSQYLFEDGYADR 540

Query: 83  ---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
              I CTQPRR+A +S+++RVA E        VGY IRFE      T + ++T+G+LLR+
Sbjct: 541 GLMIGCTQPRRVAAMSVARRVADEMGVALGEQVGYAIRFEDATSPATVLKYMTDGILLRE 600



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 70/103 (67%), Gaps = 1/103 (0%)

Query: 808 SRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG CYRLY+E QY   L   + PEI+R ++ +++L L  +G+ D+ KF F++APP 
Sbjct: 823 GRTGPGQCYRLYTERQYEEELLPNTVPEIQRTNLSNVVLLLKSLGVDDLLKFHFMDAPPQ 882

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
           +N+ +S+  L   GA+D+  ++T LGR + +LP+D  L KML+
Sbjct: 883 DNLLNSMYQLWTLGALDNTGQLTKLGRRMIELPLDPTLSKMLI 925



 Score = 48.1 bits (113), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L  Y V+++DE HER L+ D L G++K +L    ++K+I+ SAT++   F  +F  +   
Sbjct: 607  LDHYSVVIMDEAHERSLNTDVLFGLLKEVLARRRDLKLIVTSATMDAAKFADFFGNVPVF 666

Query: 1182 LLSGST 1187
             + G T
Sbjct: 667  NIPGRT 672


>gi|417839109|ref|ZP_12485314.1| putative rNA helicase, ATP-dependent DEAH box, HrpA type
           [Haemophilus haemolyticus M19107]
 gi|341954938|gb|EGT81405.1| putative rNA helicase, ATP-dependent DEAH box, HrpA type
           [Haemophilus haemolyticus M19107]
          Length = 870

 Score =  264 bits (675), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 170/493 (34%), Positives = 265/493 (53%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA +        K ++T+ GR L+ LPVD  L  ML+       +  V+ + A LS+
Sbjct: 473 EELGAFEIVRTKAGEKRQLTAAGRQLAQLPVDPRLAIMLLSAVSQGALHEVMIIVAALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  LN +      +K+  ++  ++ C++  + 
Sbjct: 533 QDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWHYLQEQQKELSKNQFRRQCQKDFLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE  
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE-- 645

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 646 --KQQYLGARNAH 656



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKAEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  +++  LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETEFGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA +        K ++T  GR L+ LPVD  L  ML+       +  ++
Sbjct: 465 IQDGIKLLEELGAFEIVRTKAGEKRQLTAAGRQLAQLPVDPRLAIMLLSAVSQGALHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVAALSIQ--DPRER 538



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 41.2 bits (95), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|407792027|ref|ZP_11139101.1| ATP-dependent RNA helicase HrpA [Gallaecimonas xiamenensis 3-C-1]
 gi|407198386|gb|EKE68422.1| ATP-dependent RNA helicase HrpA [Gallaecimonas xiamenensis 3-C-1]
          Length = 1285

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 157/443 (35%), Positives = 247/443 (55%), Gaps = 28/443 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DFLLG ++ +L    ++K+I+ SATI+ E F  
Sbjct: 174 AEIQKDKLLRRYDTLIIDEAHERSLNIDFLLGYLRTILPKRPDLKVIITSATIDPERFSR 233

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A +++V GR YP+++ Y PI + ++ K +         I   +D+ +    RGD+
Sbjct: 234 HFND-APMLEVSGRTYPVEVRYRPITDEEKEKDQ------LQAIFDAVDELFREGPRGDI 286

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A ++   K +   +LPL S LS  EQ+R+F  A  G R+ +++TN
Sbjct: 287 LIFMNGEREIRDTADALEK--RKLRHTEILPLFSRLSAAEQNRIF--ASHGGRRIVLATN 342

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT PG+C 
Sbjct: 343 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEAISQASANQRKGRCGRTEPGICI 402

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ +++L ++ +GLGD+  FPF+EAP +  ++  +  L
Sbjct: 403 RLYSEEDFTGRPEFTEPEILRTNLGAVILQMLSLGLGDIEAFPFVEAPDSRFVKDGLNLL 462

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GAID +E +T +GR L+ LPVD  L + LV G+    +  +L ++A L++Q P    
Sbjct: 463 DELGAIDGRE-LTDIGRQLAKLPVDTRLARCLVEGAKRGALKELLIISAALAIQDPRE-- 519

Query: 669 AFRDPDCETARKELESNHGDP------LTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
             R  D +    E       P         L AY E    ++  + S +W   C++  + 
Sbjct: 520 --RPLDAQQKADEQHRRFAHPESDFYAFVNLWAYSE---AQQQALSSSQWRRLCQKEFLN 574

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   L  Q ++   + G 
Sbjct: 575 YVRMREWQDLTEQLREFCDELGF 597



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 82/130 (63%), Gaps = 3/130 (2%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT PG+C RLYSEE ++   E++ PEI R ++ +++L ++ +GLGD+  FPF+EAP + 
Sbjct: 394 GRTEPGICIRLYSEEDFTGRPEFTEPEILRTNLGAVILQMLSLGLGDIEAFPFVEAPDSR 453

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            ++  +  L + GAID +E +T +GR L+ LPVD  L + LV G+    +  +L++  AL
Sbjct: 454 FVKDGLNLLDELGAIDGRE-LTDIGRQLAKLPVDTRLARCLVEGAKRGALKELLIISAAL 512

Query: 928 NFGAIDSKER 937
                D +ER
Sbjct: 513 AIQ--DPRER 520



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIAC 93
            LPV   +++I   + + +VVIIAG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 70  QLPVVAAREDIKKAISENQVVIIAGETGSGKTTQLPKICLELGRGVDGLIGHTQPRRLAA 129

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+   LVGYQ+RF  H R +T +  +T+G+LL
Sbjct: 130 RAVATRLAEELQSELGGLVGYQVRFTDHTRAQTCVKLMTDGILL 173



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DFLLG ++ +L    ++K+I+ SATI+ E F  
Sbjct: 174  AEIQKDKLLRRYDTLIIDEAHERSLNIDFLLGYLRTILPKRPDLKVIITSATIDPERFSR 233

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 234  HFNDAPMLEVSGRT 247


>gi|344290370|ref|XP_003416911.1| PREDICTED: putative ATP-dependent RNA helicase DHX33 [Loxodonta
           africana]
          Length = 704

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 255/443 (57%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 175 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQRRRKELGKLPLKVIVMSATMDVD 234

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 235 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQSD---YLHAALVSVFQIHQEA 282

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 283 PPSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 340

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++V+D+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 341 PKGYRKVIISTNIAETSITISGIKYVIDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 400

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + DV  F F+  P
Sbjct: 401 GRAGREDSGICYRLYTEEEFDKFDKMTVPEIQRCNLASVMLQLLAMKVPDVLTFDFMSKP 460

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             +++++++  L   GA+D K+    +T +GR ++  P+D    K ++    FH  + +L
Sbjct: 461 SPDHVQAAIAQLDLLGALDHKDDQLTLTPIGRKMAAFPLDPKFAKTILLSPKFHCTEEIL 520

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  +  +    K WC
Sbjct: 521 TIVSLLSVDSVLYNPPARRDEVQGVRKKFISSEGDHITLLNIYRSFKNIGGN----KDWC 576

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    V ++R+Q + +
Sbjct: 577 KENFVNSKNMLLVAEVRAQLRDI 599



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 68  RRSLPIFQARGQLLAQLRNLDSAVLIGETGSGKTTQIPQYLYEGGIGRQGVIAVTQPRRV 127

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RF+    E T+I F+T+G+LLR+
Sbjct: 128 AAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLRE 175



 Score = 77.0 bits (188), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + DV  F F+  P  ++
Sbjct: 405 REDSGICYRLYTEEEFDKFDKMTVPEIQRCNLASVMLQLLAMKVPDVLTFDFMSKPSPDH 464

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           +++++  L   GA+D K+    +T +GR ++  P+D    K ++    FH  + +L +
Sbjct: 465 VQAAIAQLDLLGALDHKDDQLTLTPIGRKMAAFPLDPKFAKTILLSPKFHCTEEILTI 522



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 178  SDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQRRRKELGKLPLKVIVMSATMDVDLFS 237

Query: 1173 TYFN 1176
             YFN
Sbjct: 238  QYFN 241


>gi|183179379|ref|ZP_02957590.1| ATP-dependent helicase HrpA [Vibrio cholerae MZO-3]
 gi|183012790|gb|EDT88090.1| ATP-dependent helicase HrpA [Vibrio cholerae MZO-3]
          Length = 1309

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 256/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQASDEKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|123455454|ref|XP_001315471.1| helicase [Trichomonas vaginalis G3]
 gi|121898149|gb|EAY03248.1| helicase, putative [Trichomonas vaginalis G3]
          Length = 1006

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 246/435 (56%), Gaps = 23/435 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  LS+Y V++LDE HER +H D L G++K LL     +K+I+ SAT+  E F ++
Sbjct: 451 ECLGDRQLSNYGVIMLDEAHERTIHTDVLFGLMKELLSKDDRLKVIVTSATLQKEKFSSF 510

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F     +++VPGR +P+   +      D  ++          + +++       + GD+L
Sbjct: 511 FFN-CPVLEVPGRTFPVTTSFAVTAFTDYLQAS---------VNTVLKLHQTEEKPGDIL 560

Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F++G  +I +    I + ++   E     IVLP++S+L  E+Q  +F   P G RK +V
Sbjct: 561 LFLTGQDDIDTACEQIYQRSKPMEENFGKLIVLPIYSSLPTEQQTMIFQPTPPGQRKVVV 620

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETSITIDGIR+VVD G VKEM YD    M TL+   ISKA+A QRKGRAGRT  G
Sbjct: 621 ATNIAETSITIDGIRYVVDPGLVKEMRYDPRTGMDTLEVVPISKAAANQRKGRAGRTAAG 680

Query: 546 VCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            C RLY+E+ Y+  + E + PEI+R ++  + L +  +G+ D+  F F++ PP + I  +
Sbjct: 681 KCIRLYTEDSYNNEMKETTIPEIQRSNMAMVALDMKVIGIDDLIGFDFMDKPPTKIIIDA 740

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           +  L   GA+D +  +T LGR +S   ++  L KML+  SM    + VL L A+LSVQ  
Sbjct: 741 LDQLYTLGALDEEGNLTPLGRDMSKFSLNPQLAKMLIMSSMLGCSEEVLVLVAILSVQGI 800

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           +     +  + +  +  L  + GD +T+L+ ++EW   +K+  R + WCK   +  +   
Sbjct: 801 WYRPRKKQAEADAMKARLNRDEGDHMTLLHVFREW---QKNGER-EAWCKENYVHYRSLK 856

Query: 725 E----VTKLRSQFKQ 735
                +T+LR Q +Q
Sbjct: 857 RAKDVMTQLRQQMEQ 871



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 80/111 (72%), Gaps = 3/111 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRI 91
           +  LP++ Y+ +IID + K RV I+ G+TGCGK+TQIPQ+L+++G      I  TQPRR+
Sbjct: 344 KKKLPISDYESQIIDMLSKNRVFILVGETGCGKTTQIPQFLLRSGIAGDLMIGVTQPRRV 403

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
           A IS++KRVA ET S   +L+GYQ+RFE+     TK+ F+T+G+LL++  G
Sbjct: 404 AAISVAKRVADETNSIIGDLIGYQVRFEEKTSRNTKVKFMTDGMLLKECLG 454



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 1/130 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RT  G C RLY+E+ Y+  + E + PEI+R ++  + L +  +G+ D+  F F++ PP +
Sbjct: 676 RTAAGKCIRLYTEDSYNNEMKETTIPEIQRSNMAMVALDMKVIGIDDLIGFDFMDKPPTK 735

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I  ++  L   GA+D +  +T LGR +S   ++  L KML+  SM    + +L+L   L
Sbjct: 736 IIIDALDQLYTLGALDEEGNLTPLGRDMSKFSLNPQLAKMLIMSSMLGCSEEVLVLVAIL 795

Query: 928 NFGAIDSKER 937
           +   I  + R
Sbjct: 796 SVQGIWYRPR 805



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
             D  LS+Y V++LDE HER +H D L G++K LL     +K+I+ SAT+  E F ++F
Sbjct: 454  GDRQLSNYGVIMLDEAHERTIHTDVLFGLMKELLSKDDRLKVIVTSATLQKEKFSSFF 511


>gi|229521492|ref|ZP_04410911.1| ATP-dependent helicase HrpA [Vibrio cholerae TM 11079-80]
 gi|229341590|gb|EEO06593.1| ATP-dependent helicase HrpA [Vibrio cholerae TM 11079-80]
          Length = 1309

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 256/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQASDEKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAKAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|421354149|ref|ZP_15804481.1| ATP-dependent helicase HrpA [Vibrio cholerae HE-45]
 gi|395953274|gb|EJH63887.1| ATP-dependent helicase HrpA [Vibrio cholerae HE-45]
          Length = 1309

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 256/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQASDEKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|354723457|ref|ZP_09037672.1| ATP-dependent RNA helicase HrpA [Enterobacter mori LMG 25706]
          Length = 1281

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 248/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+       GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGNESAGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     +LPL++ LS  EQ+RVF   P G R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALSKRDLRHTE--ILPLYARLSNSEQNRVFQ--PHGGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+VT+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQVTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKERVTT-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E+VT      LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQVTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|397644617|gb|EJK76470.1| hypothetical protein THAOC_01766 [Thalassiosira oceanica]
          Length = 1282

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 155/433 (35%), Positives = 239/433 (55%), Gaps = 20/433 (4%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E  ADN L  Y  L+LDE HER +H D L G++K L+    E+K+I+ SAT++ E F TY
Sbjct: 733  EYLADNDLRRYSALMLDEAHERTIHTDVLFGLLKDLMRRRPEMKLIVTSATLDAEKFSTY 792

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F     I  +PGR +P+ + Y    E     S+ LD    I I+ I    +     GD+L
Sbjct: 793  FFE-CPIFTIPGRTFPVDIMYTKEPE-----SDYLDAA-LITIMQI----HLSEPAGDIL 841

Query: 430  IFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
            +F++G  EI +         +   + +   I+LP++S+L  E Q R+F  AP G RKC+V
Sbjct: 842  LFLTGQEEIDTACETLFSRMKALGDLAPELIILPVYSSLPSEMQSRIFEPAPPGSRKCVV 901

Query: 486  STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
            +TNIAE S+TIDGI +VVD G  K+ +++    M +L    IS+ASA QR GRAGRTGPG
Sbjct: 902  ATNIAEASLTIDGIYYVVDPGFSKQKAFNAKLGMDSLVVTPISQASARQRAGRAGRTGPG 961

Query: 546  VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
             CYRLY+E  Y + +   + PEI+R ++ +++L L  MG+ D+  F F++APP   +  +
Sbjct: 962  KCYRLYTEMAYKNEMLSTNIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDAPPVATMVGA 1021

Query: 605  VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            +  L   GA+D +  +T LGR +++ P++  L KML+        D +L++ ++LSV++P
Sbjct: 1022 MEGLHALGALDDEGLLTRLGRKMAEFPLEPNLSKMLLLSVDLGCSDEILTITSLLSVENP 1081

Query: 665  FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
            F     +    +  + +     GD LT+L  YK W   K     S  WC    ++ +   
Sbjct: 1082 FYRPRDKQGQADMKKAKFHQAEGDHLTLLAVYKGWEASK----FSNPWCFENFVQARSMR 1137

Query: 725  EVTKLRSQFKQVL 737
                +R Q   ++
Sbjct: 1138 RAQDVRKQLVTIM 1150



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 83/132 (62%), Gaps = 10/132 (7%)

Query: 18  DFKQKEKFSTL-------MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQ 70
           ++KQK +  TL         I+E + SLPV + K E++  + + +V+++ G+TG GK+TQ
Sbjct: 602 EWKQKAESKTLSYGIISNKSIKEQRESLPVFRLKSELMRAMSENQVLVVIGETGSGKTTQ 661

Query: 71  IPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           + QYL + G  R   I CTQPRR+A +S++KRV+ E        VGY IRFE    + TK
Sbjct: 662 MTQYLHEQGITRNGMIGCTQPRRVAAVSVAKRVSEEFGCTLGEEVGYTIRFEDCTSQSTK 721

Query: 128 IVFITEGLLLRQ 139
           I ++T+G+L+R+
Sbjct: 722 IKYMTDGMLMRE 733



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y + +   + PEI+R ++ +++L L  MG+ D+  F F++APP  
Sbjct: 957  RTGPGKCYRLYTEMAYKNEMLSTNIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDAPPVA 1016

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVF 910
             +  ++  L   GA+D +  +T LGR +++ P++  L KML+ 
Sbjct: 1017 TMVGAMEGLHALGALDDEGLLTRLGRKMAEFPLEPNLSKMLLL 1059



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            ADN L  Y  L+LDE HER +H D L G++K L+    E+K+I+ SAT++ E F TYF
Sbjct: 736  ADNDLRRYSALMLDEAHERTIHTDVLFGLLKDLMRRRPEMKLIVTSATLDAEKFSTYF 793


>gi|416106657|ref|ZP_11589957.1| LOW QUALITY PROTEIN: ATP-dependent helicase [Aggregatibacter
           actinomycetemcomitans serotype c str. SCC2302]
 gi|348006137|gb|EGY46599.1| LOW QUALITY PROTEIN: ATP-dependent helicase [Aggregatibacter
           actinomycetemcomitans serotype c str. SCC2302]
          Length = 513

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 145/362 (40%), Positives = 219/362 (60%), Gaps = 20/362 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  +
Sbjct: 137 EIQTDRFLNQYACLIIDEAHERSLNNDFILGYLKQLLPRRPDLKLIITSATIDVERFSKH 196

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F+  A II+V GR YP+++ Y PI E D       D      IL+ +D+      RGD+L
Sbjct: 197 FDN-APIIEVSGRTYPVEVRYRPIAEED-------DQDQLQGILNAVDELQAEG-RGDIL 247

Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
           IFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN+
Sbjct: 248 IFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATNV 303

Query: 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYR 549
           AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C R
Sbjct: 304 AETSLTVPGIKYVIDPGTARISRYSYRIKVQRLPIEPISQASANQRKGRCGRVSEGICIR 363

Query: 550 LYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLT 609
           LYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L 
Sbjct: 364 LYSEEDFNNRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLLE 423

Query: 610 QHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           + GA ++       K ++T +GR L+ LPVD  L KML+    F  +  V+ + + LS+Q
Sbjct: 424 ELGAFETVKTKFGEKRQLTQIGRQLAQLPVDPRLAKMLLSAVNFGSVYEVMIIVSALSIQ 483

Query: 663 SP 664
            P
Sbjct: 484 DP 485



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 90/162 (55%), Gaps = 9/162 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   
Sbjct: 354 GRVSEGICIRLYSEEDFNNRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKR 413

Query: 868 NIESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTM 920
           +I+  V+ L + GA ++       K ++T +GR L+ LPVD  L KML+    F  +  +
Sbjct: 414 HIQDGVKLLEELGAFETVKTKFGEKRQLTQIGRQLAQLPVDPRLAKMLLSAVNFGSVYEV 473

Query: 921 LLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGS 962
           +++  AL+    D +ER T   +   +  V +P+   + + S
Sbjct: 474 MIIVSALSIQ--DPRERPTEKQQAADEKIVVLPIKNRISWRS 513



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ G   F  I  TQPRRIA 
Sbjct: 32  SLPVSQRKAEIEKLLSEHQVIVVAGETGSGKTTQLPKICLELGLGNFGMIGHTQPRRIAA 91

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  +LVGY++RF     + T+I  +T+G+LL
Sbjct: 92  RSVAVRIAEELQTELGDLVGYKVRFNDQISDNTQIKLMTDGILL 135



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  +
Sbjct: 137  EIQTDRFLNQYACLIIDEAHERSLNNDFILGYLKQLLPRRPDLKLIITSATIDVERFSKH 196

Query: 1175 FNRIAKDLLSGST 1187
            F+      +SG T
Sbjct: 197  FDNAPIIEVSGRT 209



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLG 257
           ++ TD FL+ Y  LI+DE HER L  DF+LG
Sbjct: 137 EIQTDRFLNQYACLIIDEAHERSLNNDFILG 167


>gi|417824445|ref|ZP_12471036.1| ATP-dependent helicase HrpA [Vibrio cholerae HE48]
 gi|340048130|gb|EGR09053.1| ATP-dependent helicase HrpA [Vibrio cholerae HE48]
          Length = 1309

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 256/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQASDEKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|407715351|ref|YP_006836631.1| ATP-dependent helicase HrpA [Cycloclasticus sp. P1]
 gi|407255687|gb|AFT66128.1| ATP-dependent helicase HrpA [Cycloclasticus sp. P1]
          Length = 1298

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 153/427 (35%), Positives = 245/427 (57%), Gaps = 12/427 (2%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+ +D FLS YD L+LDE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 185 AEIKSDPFLSQYDTLILDEAHERSLNIDFLLGYMKWLLPKRPDLKLIVTSATIDPERFSR 244

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A II V GR YP+++ Y P+    +   E +  G    I++  D+ + R   GD+
Sbjct: 245 HFDG-APIINVSGRTYPVEMRYRPVGVDSQQGDEDIVQG----IVNAADELH-RERAGDM 298

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG  EI     A ++++    G+ +LPL+S LS +EQ  +F   P    + +++TN
Sbjct: 299 LVFLSGEREIREAAEALRKHH--PAGYDILPLYSRLSSKEQAAIFK--PHKKPRIVLATN 354

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GIR V+D+G  +   +   +K+  L    IS+ASA QR GR GR   G+C 
Sbjct: 355 VAETSLTVPGIRCVIDTGLARISRFSQRSKIQQLPIEAISQASANQRSGRCGREAAGICI 414

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RL+SE+ ++   E++ PEI R ++ S++L +  + L D+ +FPFLE P  + I S VRSL
Sbjct: 415 RLFSEDDFNQRPEFTEPEILRTNLASVILQMKSLRLADINQFPFLEPPADKMIRSGVRSL 474

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GA+D  E++T +GR L+  P+D   G+ML+    F  +D VL++ + LS+Q P    
Sbjct: 475 HELGALDKNEKLTQIGRRLTHFPLDPQFGRMLLAAEQFQCLDEVLTIVSALSIQDPRERP 534

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKK--DRVRSKKWCKRRGIEEQRFYEV 726
             +    +   K  ++   D L+ L  ++E    KK     + +K+C+   +   R  + 
Sbjct: 535 GDKAKYADEKHKAYQNESSDFLSFLVLWREIQRQKKTLSNNQFRKYCRENFLAYMRIKDW 594

Query: 727 TKLRSQF 733
             +R Q 
Sbjct: 595 EDIRRQL 601



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RL+SE+ ++   E++ PEI R ++ S++L +  + L D+ +FPFLE P  + 
Sbjct: 407 REAAGICIRLFSEDDFNQRPEFTEPEILRTNLASVILQMKSLRLADINQFPFLEPPADKM 466

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           I S VRSL + GA+D  E++T +GR L+  P+D   G+ML+    F  +D +L +  AL+
Sbjct: 467 IRSGVRSLHELGALDKNEKLTQIGRRLTHFPLDPQFGRMLLAAEQFQCLDEVLTIVSALS 526

Query: 929 FGAIDSKER 937
               D +ER
Sbjct: 527 IQ--DPRER 533



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 72/103 (69%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ--AGFQ-RIACTQPRRIACI 94
           LP+++ ++EI   + K +V+I+ G+TG GK+TQ+P+  ++   GF+ +I  TQPRR+A I
Sbjct: 82  LPISERREEISKLIDKHQVIILCGETGSGKTTQLPKICLELGRGFKGQIGHTQPRRLAAI 141

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S+++R+A E  S+    VGY+IRF+    ++T +  +T+G+LL
Sbjct: 142 SVAQRIADELKSELGQAVGYKIRFQGKENQQTLVKLMTDGILL 184



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++ +D FLS YD L+LDE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 185  AEIKSDPFLSQYDTLILDEAHERSLNIDFLLGYMKWLLPKRPDLKLIVTSATIDPERFSR 244

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 245  HFDGAPIINVSGRT 258



 Score = 44.7 bits (104), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++ +D FLS YD LILDE HER L  DFLLG +
Sbjct: 185 AEIKSDPFLSQYDTLILDEAHERSLNIDFLLGYM 218



 Score = 42.0 bits (97), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 979  FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKER 1037
             GA+D  E++T +GR L+  P+D   G+ML+    F  +D +L +  AL+    D +ER
Sbjct: 477  LGALDKNEKLTQIGRRLTHFPLDPQFGRMLLAAEQFQCLDEVLTIVSALSIQ--DPRER 533



 Score = 41.2 bits (95), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 14/95 (14%)

Query: 1029 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEE 1088
             GA+D  E++T +GR L+  P+D   G+ML+    F  +D +L +  AL+      ++  
Sbjct: 477  LGALDKNEKLTQIGRRLTHFPLDPQFGRMLLAAEQFQCLDEVLTIVSALSI-----QDPR 531

Query: 1089 EEAGERLESMDANEVEFRLKHDPKQVQVAADNFLS 1123
            E  G++ +  D        KH  K  Q  + +FLS
Sbjct: 532  ERPGDKAKYADE-------KH--KAYQNESSDFLS 557


>gi|53804450|ref|YP_113939.1| ATP-dependent helicase HrpA [Methylococcus capsulatus str. Bath]
 gi|53758211|gb|AAU92502.1| ATP-dependent helicase HrpA [Methylococcus capsulatus str. Bath]
          Length = 1294

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 252/437 (57%), Gaps = 10/437 (2%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D FL  YD L++DE HER L+ DFLLG +K LL    ++K+++ SATI+ E F  
Sbjct: 177 AETQTDRFLDQYDTLIVDEAHERSLNIDFLLGYLKWLLPRRHDLKLVITSATIDPERFSR 236

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A I++VPGR YP+++ Y P    +  +S++ + G    IL  +D+ + R   GD+
Sbjct: 237 HFDN-APIVRVPGRTYPVEIRYRPPDSAE-EESDETERGEQQAILDAVDELH-RENTGDI 293

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIF+SG  EI     + ++++       VLPL+S L++ EQ+++F   P G R+ +++TN
Sbjct: 294 LIFLSGEREIRDTAESLRKHHPAD--CEVLPLYSRLTVSEQEKIFK--PHGRRRIVLATN 349

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GIR V+D+G  +   Y   +K+  L    IS+ASA QR GR GR GPGVC 
Sbjct: 350 VAETSLTVPGIRGVIDAGYARISRYSHRSKLQRLPIEKISRASANQRAGRCGRVGPGVCI 409

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ +    E++ PEI R ++ +++L +  + LGD+R FPF+E P    +   +R+L
Sbjct: 410 RLYSEQDFLNRPEFTDPEILRTNLAAVILQMKALNLGDIRVFPFVEPPDERLVRDGLRTL 469

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            +  A+D++ R+T LGR L+ LPVD  LG++L+ G+  + +  V  + A LSV  P    
Sbjct: 470 QEINALDAQGRLTELGRRLARLPVDPRLGRILLAGAEENCLSEVCIIVAALSVPDPRERP 529

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRFYEV 726
           A +    +           D + +L  + ++   ++    SK  ++C+   +   R  E 
Sbjct: 530 ADKAQAADQKHARFRHPDSDFMAILALWNDYEEQRQHLSGSKLRQYCRDNFLSALRMREW 589

Query: 727 TKLRSQFKQVL-GDSGL 742
             +  Q  +V+ G+ GL
Sbjct: 590 RDIHQQILEVVKGELGL 606



 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 82/130 (63%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R GPGVC RLYSE+ +    E++ PEI R ++ +++L +  + LGD+R FPF+E P   
Sbjct: 401 GRVGPGVCIRLYSEQDFLNRPEFTDPEILRTNLAAVILQMKALNLGDIRVFPFVEPPDER 460

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +   +R+L +  A+D++ R+T LGR L+ LPVD  LG++L+ G+  + +  + ++  AL
Sbjct: 461 LVRDGLRTLQEINALDAQGRLTELGRRLARLPVDPRLGRILLAGAEENCLSEVCIIVAAL 520

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 521 SVP--DPRER 528



 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 3/108 (2%)

Query: 33  ETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPR 89
           E    LPV++ + EI + + + +VVI+ G+TG GK+TQ+P+  ++AG      I  TQPR
Sbjct: 69  EYPEELPVSERRGEIAEAIRQNQVVIVCGETGSGKTTQLPKICLEAGRGIQGYIGHTQPR 128

Query: 90  RIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           RIA  S++ R+A E        VGY++RF    R  + I  +T+G+LL
Sbjct: 129 RIAARSVAARIADELKRPLGETVGYKVRFHDQTRPDSLIKLMTDGILL 176



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 41/63 (65%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D FL  YD L++DE HER L+ DFLLG +K LL    ++K+++ SATI+ E F  
Sbjct: 177  AETQTDRFLDQYDTLIVDEAHERSLNIDFLLGYLKWLLPRRHDLKLVITSATIDPERFSR 236

Query: 1174 YFN 1176
            +F+
Sbjct: 237  HFD 239



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            +  TD FL  YD LI+DE HER L  DFLLG +
Sbjct: 177 AETQTDRFLDQYDTLIVDEAHERSLNIDFLLGYL 210



 Score = 40.0 bits (92), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 26/131 (19%)

Query: 1029 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEE 1088
              A+D++ R+T LGR L+ LPVD  LG++L+ G+  + +  + ++  AL     S  +  
Sbjct: 472  INALDAQGRLTELGRRLARLPVDPRLGRILLAGAEENCLSEVCIIVAAL-----SVPDPR 526

Query: 1089 EEAGERLESMDANEVEFR-----------LKHD----------PKQVQVAADNFLSSYDV 1127
            E   ++ ++ D     FR           L +D           K  Q   DNFLS+  +
Sbjct: 527  ERPADKAQAADQKHARFRHPDSDFMAILALWNDYEEQRQHLSGSKLRQYCRDNFLSALRM 586

Query: 1128 LVLDEIHERHL 1138
                +IH++ L
Sbjct: 587  REWRDIHQQIL 597


>gi|350531094|ref|ZP_08910035.1| ATP-dependent RNA helicase HrpA [Vibrio rotiferianus DAT722]
          Length = 1278

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 231/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 221 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 273

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 274 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 329

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 330 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 389

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 390 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 449

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D+K+R+TS+GR L+ LP+D  L +M++       +  V+ +AA LS+Q 
Sbjct: 450 EELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMIIAAALSIQD 509

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   K       D LT +N +
Sbjct: 510 PRERPSDKQQSSDDKHKRFFHEDSDFLTFVNLW 542



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 381 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 440

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D+K+R+T++GR L+ LP+D  L +M++       +  +++
Sbjct: 441 NIQDGVRLLEELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMI 500

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 501 IAAALSIQ--DPRER 513



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 58  LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 160



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234



 Score = 40.0 bits (92), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 194


>gi|294667045|ref|ZP_06732272.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603202|gb|EFF46626.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 1366

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 160/446 (35%), Positives = 248/446 (55%), Gaps = 38/446 (8%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LSSYD +++DE HER L+ DFLLG +K LLH   ++K+I+ SATI+ E F  
Sbjct: 175 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRPDLKLIVTSATIDTERFAR 234

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR---------ILSIIDKK 419
           +F+  A +I V GR +P+++ Y P+       +   D G + R         I++ ID+ 
Sbjct: 235 HFDN-APVISVEGRTFPVEVRYRPL----EGDTGDTDEGEHGRDGERSVNDAIVAAIDEI 289

Query: 420 YPRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAP 477
                RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QDRVF+  P
Sbjct: 290 TRIDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDRVFNPGP 345

Query: 478 EGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKG 537
              R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR G
Sbjct: 346 R--RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMG 403

Query: 538 RAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 597
           R GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP 
Sbjct: 404 RCGRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPD 463

Query: 598 AENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAA 657
              +    + L + GAID++ R+T+ GR ++ LPVD+ L +MLV       +  ++ +AA
Sbjct: 464 ERAVADGWQQLLELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAA 523

Query: 658 VLSVQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDRVRSK 710
            L +Q P      R P+   A     +   D        L + +AY++   V +D  +SK
Sbjct: 524 FLGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDLTQSK 576

Query: 711 --KWCKRRGIEEQRFYEVTKLRSQFK 734
              WC R  +   R  E  +L  Q +
Sbjct: 577 LRDWCNRHFLGFLRMREWRELHRQLR 602



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 406 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 465

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 466 AVADGWQQLLELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 523

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 524 FLGIQDPRER 533



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 8/105 (7%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           N LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  NQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
                 RVA E  +     VG+Q+RF     ++++I F+T+G+LL
Sbjct: 135 A-----RVADELKTPLGTTVGFQVRFTDRVSDQSRIKFMTDGILL 174



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 47/63 (74%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LSSYD +++DE HER L+ DFLLG +K LLH   ++K+I+ SATI+ E F  
Sbjct: 175  AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRPDLKLIVTSATIDTERFAR 234

Query: 1174 YFN 1176
            +F+
Sbjct: 235  HFD 237



 Score = 47.8 bits (112), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 28/39 (71%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++A+D +LSSYD +I+DE HER L  DFLLG +   LH
Sbjct: 175 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLH 213



 Score = 44.3 bits (103), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 475  LELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAAFLGIQDPRE 532

Query: 1037 R 1037
            R
Sbjct: 533  R 533



 Score = 41.6 bits (96), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M+++
Sbjct: 475  LELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 521


>gi|425063454|ref|ZP_18466579.1| HrpA-like helicase [Pasteurella multocida subsp. gallicida X73]
 gi|404383017|gb|EJZ79474.1| HrpA-like helicase [Pasteurella multocida subsp. gallicida X73]
          Length = 1304

 Score =  264 bits (674), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 169/496 (34%), Positives = 270/496 (54%), Gaps = 37/496 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE    + ++L       IL  +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVE--NEEQDQLQA-----ILDAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ + K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQDLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   NI+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRNIQDGIKLL 472

Query: 609 TQHGA-------IDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +  A          K ++T  G+ L+ LPVD  L KML+     + +  V+ + + LS+
Sbjct: 473 EELEAFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKLNCLHEVMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYK----EWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN ++    +   + K++ R  + C++  
Sbjct: 533 QDPRERPQEKQQSADDKHRRFADKKSDFLAFLNLWQFIQTQQKALSKNQFR--RLCQKDY 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL-ITDIPGPDASLSSRERALRHGEIKLLQAIKRKKA 776
           +   R  E   +  Q +  + + GL I   P   A + +   AL  G   LL  I  K++
Sbjct: 591 LNYLRIREWQDIYHQIRLTVREMGLPINSQPAEYAQIHT---ALLSG---LLSHIGMKES 644

Query: 777 EEAPKRRKMLKADNAY 792
           E++    + L A NA+
Sbjct: 645 EKS----QYLGARNAH 656



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 3/112 (2%)

Query: 29  MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IAC 85
           +K  E   +LPV+Q K EI   + + +VV+IAG+TG GK+TQ+P+  ++ G      I  
Sbjct: 74  VKTIEFPENLPVSQRKAEIQKLISQHQVVVIAGETGSGKTTQLPKMCLELGRGTKGLIGH 133

Query: 86  TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           TQPRRIA  S++ R+A E  ++  +LVGY++RF     + T +  +T+G+LL
Sbjct: 134 TQPRRIAARSVASRIAEELKTELGDLVGYKVRFNDQISDNTMVKLMTDGILL 185



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   N
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRN 464

Query: 869 IESSVRSLTQHGA-------IDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L +  A          K ++T  G+ L+ LPVD  L KML+     + +  ++
Sbjct: 465 IQDGIKLLEELEAFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKLNCLHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 43.5 bits (101), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYL 219


>gi|419829944|ref|ZP_14353430.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-1A2]
 gi|419832917|ref|ZP_14356379.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-61A2]
 gi|422917131|ref|ZP_16951459.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-02A1]
 gi|423819805|ref|ZP_17716063.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-55C2]
 gi|423853137|ref|ZP_17719855.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-59A1]
 gi|423880561|ref|ZP_17723457.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-60A1]
 gi|423997548|ref|ZP_17740807.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-02C1]
 gi|424016255|ref|ZP_17756096.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-55B2]
 gi|424019196|ref|ZP_17758992.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-59B1]
 gi|424624737|ref|ZP_18063209.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-50A1]
 gi|424629240|ref|ZP_18067537.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-51A1]
 gi|424633271|ref|ZP_18071381.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-52A1]
 gi|424636362|ref|ZP_18074377.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-55A1]
 gi|424640299|ref|ZP_18078189.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-56A1]
 gi|424648333|ref|ZP_18086003.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-57A1]
 gi|443527157|ref|ZP_21093222.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-78A1]
 gi|341638524|gb|EGS63171.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-02A1]
 gi|408014094|gb|EKG51770.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-50A1]
 gi|408019662|gb|EKG57054.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-52A1]
 gi|408024798|gb|EKG61886.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-56A1]
 gi|408025326|gb|EKG62385.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-55A1]
 gi|408034707|gb|EKG71194.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-57A1]
 gi|408057072|gb|EKG91938.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-51A1]
 gi|408621529|gb|EKK94532.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-1A2]
 gi|408635738|gb|EKL07924.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-55C2]
 gi|408642898|gb|EKL14642.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-60A1]
 gi|408643106|gb|EKL14845.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-59A1]
 gi|408651561|gb|EKL22817.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-61A2]
 gi|408853480|gb|EKL93273.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-02C1]
 gi|408861135|gb|EKM00734.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-55B2]
 gi|408868691|gb|EKM08011.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-59B1]
 gi|443454563|gb|ELT18365.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-78A1]
          Length = 1309

 Score =  263 bits (673), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++SE+    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESERDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEAFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEAFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 41.2 bits (95), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|319786296|ref|YP_004145771.1| ATP-dependent helicase HrpA [Pseudoxanthomonas suwonensis 11-1]
 gi|317464808|gb|ADV26540.1| ATP-dependent helicase HrpA [Pseudoxanthomonas suwonensis 11-1]
          Length = 1406

 Score =  263 bits (673), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 156/460 (33%), Positives = 248/460 (53%), Gaps = 26/460 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+   F  
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTARFAR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPG---------------PYIRIL 413
           +F+  A +++V GR YP+++ Y P             PG               P   I 
Sbjct: 240 HFD-DAPVVEVAGRTYPVEVRYRPPEAPGEESQAPPQPGRGSAARRPRPEREADPLSAIT 298

Query: 414 SIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF 473
           + +D+      RGDVL+F+ G  EI  + RA ++   +S    VLPL++ LS ++QDRVF
Sbjct: 299 AAVDEITAGDPRGDVLVFLPGEREIRDLHRALEKRQYRST--EVLPLYARLSAKDQDRVF 356

Query: 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAE 533
           +  P+  R+ +++TN+AETS+T+  IR+V+D G  +   Y   +K+  L    +S+ASA 
Sbjct: 357 NPGPQ--RRIVLATNVAETSLTVPRIRYVIDPGDARIKRYSPRSKIDRLHVEPVSQASAN 414

Query: 534 QRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFL 593
           QRKGR GR   GVCYRLYSE  +    E++ PEIRR S+  ++L ++ +GLG +  FPFL
Sbjct: 415 QRKGRCGRVSEGVCYRLYSEADFLSRPEFTDPEIRRSSLAGVILRMLHLGLGRIEDFPFL 474

Query: 594 EAPPAENIESSVRSLTQHGAID----SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQI 649
           E P    I    + L + GA++     + R+T++GR ++ LPVD+ L +MLV       +
Sbjct: 475 EPPDERAIADGWQQLLELGAVEDSGSGQRRLTAIGRQMARLPVDVKLSRMLVAAQAHGCL 534

Query: 650 DTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS 709
             +L +AA L VQ P           + A  +      + + +L  ++ +     +  +S
Sbjct: 535 RAMLPIAAFLGVQDPRERPPEAREAADNAHAQFADQRSEFVGILRLWQAYDDAHGELTQS 594

Query: 710 K--KWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIP 747
           K   WC +R +   R  E  +L  Q K +  + G   + P
Sbjct: 595 KLRDWCGKRFLGFLRMREWRELHRQLKLLCNELGWREEEP 634



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVCYRLYSE  +    E++ PEIRR S+  ++L ++ +GLG +  FPFLE P   
Sbjct: 421 GRVSEGVCYRLYSEADFLSRPEFTDPEIRRSSLAGVILRMLHLGLGRIEDFPFLEPPDER 480

Query: 868 NIESSVRSLTQHGAID----SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            I    + L + GA++     + R+T +GR ++ LPVD+ L +MLV       +  M  L
Sbjct: 481 AIADGWQQLLELGAVEDSGSGQRRLTAIGRQMARLPVDVKLSRMLVAAQAHGCLRAM--L 538

Query: 924 DLALNFGAIDSKER 937
            +A   G  D +ER
Sbjct: 539 PIAAFLGVQDPRER 552



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
           +LP+    + I++ V   +VV++AG+TG GK+TQ+P+  + AG      I CTQPRRIA 
Sbjct: 76  ALPITAEAERIVELVRTHQVVVVAGETGSGKTTQLPKLCLAAGRGVAGSIGCTQPRRIAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ RVA E  +    LVGYQ+RF  +    T+I F+T+G+LL
Sbjct: 136 RAVAARVAEELKTPLGGLVGYQVRFTDNVGADTRIKFMTDGILL 179



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+   F  
Sbjct: 180  AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTARFAR 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 45.1 bits (105), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LS+YD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYL 213


>gi|269963681|ref|ZP_06178003.1| ATP-dependent helicase HrpA [Vibrio harveyi 1DA3]
 gi|269831593|gb|EEZ85730.1| ATP-dependent helicase HrpA [Vibrio harveyi 1DA3]
          Length = 1338

 Score =  263 bits (673), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 231/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 221 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 280

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 281 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 333

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 334 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 389

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 390 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 449

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 450 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 509

Query: 609 TQHGAID-----SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI+     SK+R+TS+GR L+ LP+D  L +M++       +  V+ +AA LS+Q 
Sbjct: 510 EELGAINSDAKESKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMIIAAALSIQD 569

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   K       D LT +N +
Sbjct: 570 PRERPSDKQQSSDDKHKRFFHEDSDFLTFVNLW 602



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 83/134 (61%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   N
Sbjct: 442 RVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRN 501

Query: 869 IESSVRSLTQHGAID-----SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI+     SK+R+T++GR L+ LP+D  L +M++       +  ++++
Sbjct: 502 IQDGVRLLEELGAINSDAKESKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMII 561

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 562 AAALSIQ--DPRER 573



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 118 LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 177

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 178 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 220



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 221  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 280

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 281  HFNNAPIIEVSGRT 294



 Score = 40.4 bits (93), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 221 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 254


>gi|262403994|ref|ZP_06080549.1| ATP-dependent helicase HrpA [Vibrio sp. RC586]
 gi|262349026|gb|EEY98164.1| ATP-dependent helicase HrpA [Vibrio sp. RC586]
          Length = 1309

 Score =  263 bits (673), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 256/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALAKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N++  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNVQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQSADEKHRRFNHEDSDFLTLVNLW-HYIGEQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           N++  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 472 NVQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAKAIAQHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|320041384|gb|EFW23317.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
           [Coccidioides posadasii str. Silveira]
          Length = 669

 Score =  263 bits (673), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 166/471 (35%), Positives = 258/471 (54%), Gaps = 38/471 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  LS Y V+++DE HER L  D LLG++K ++    E++II+ SAT+  E F  +
Sbjct: 127 EALVDPLLSRYSVIMVDEAHERSLSTDILLGILKKIMKKRPELRIIVSSATLQAEEFLRF 186

Query: 370 F--------------NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI 415
           F               ++ +I+ + GR+YP+   +     L+    + ++      I ++
Sbjct: 187 FAEDQFNAENGSEMGGKVGRILSLEGRMYPVDCLF-----LESPAEDYVERA----IKTV 237

Query: 416 IDKKYPRTERGDVLIFMSGISEI----SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471
            D    +T  GD+L+F++G  EI      I   A     KSQ  + LPL++ L+ E+Q  
Sbjct: 238 FDIHAGKTN-GDILLFLTGREEIDLAIQKISERAASLPPKSQELLPLPLYAGLTTEQQLY 296

Query: 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKAS 531
           VF  APE  RK IV+TNIAE S+TIDGI FV+D G  K  +YD    + TL    ISKAS
Sbjct: 297 VFDPAPENTRKVIVATNIAEASVTIDGIVFVIDCGYAKLRAYDPNTGIDTLTAVPISKAS 356

Query: 532 AEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFP 591
           A QR GRAGRT PG C+RLY+EE Y+ L + S PEI+R ++  ++L L  +G+ ++ +F 
Sbjct: 357 ASQRAGRAGRTRPGKCFRLYTEESYACLPDASVPEIQRSNLAPVILQLKALGIDNIVRFD 416

Query: 592 FLEAPPAENIESSVRSLTQHGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQID 650
           F  +PPAE +  ++  L   GA+D   ++T  LG  +++L V+  + K+L+  S F  + 
Sbjct: 417 FFSSPPAELVVRALELLYSLGAVDEYAKLTKPLGIHMAELSVEPMMAKVLLNASTFGCLS 476

Query: 651 TVLSLAAVLSVQ-SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS 709
            +LS+AA+ SVQ S +  +       E+AR++     GD LT LN Y+ ++   K   + 
Sbjct: 477 EILSIAAMTSVQGSVWFQQEGDKKGMESARRKFAVEEGDHLTYLNVYQAFVTKGK---KD 533

Query: 710 KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERAL 760
            KWC+   +  +   +   +R+Q K+ L   G+       D +LSSR+  L
Sbjct: 534 SKWCRENSLNYKSMQKAVSIRAQLKRYLDRFGIQI-----DETLSSRKSQL 579



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 70/114 (61%), Gaps = 1/114 (0%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT PG C+RLY+EE Y+ L + S PEI+R ++  ++L L  +G+ ++ +F F  +PPAE 
Sbjct: 366 RTRPGKCFRLYTEESYACLPDASVPEIQRSNLAPVILQLKALGIDNIVRFDFFSSPPAEL 425

Query: 869 IESSVRSLTQHGAIDSKERVTT-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           +  ++  L   GA+D   ++T  LG  +++L V+  + K+L+  S F  +  +L
Sbjct: 426 VVRALELLYSLGAVDEYAKLTKPLGIHMAELSVEPMMAKVLLNASTFGCLSEIL 479



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACTQPRRIAC 93
           LP+AQ++  ++  V    V I+ G TG GK+TQ+PQ+L +AG+    ++IA TQPRR+A 
Sbjct: 22  LPIAQHRNSLLYVVENYPVTIVVGQTGSGKTTQLPQFLDKAGWCADGKQIAVTQPRRVAA 81

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            +++ RVA E        VGY IRFE      T+I F+T+GLLLR+
Sbjct: 82  TTVAARVAEEMRCSVGQEVGYSIRFEDVTSSATRIKFLTDGLLLRE 127



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  LS Y V+++DE HER L  D LLG++K ++    E++II+ SAT+  E F  +F
Sbjct: 131  DPLLSRYSVIMVDEAHERSLSTDILLGILKKIMKKRPELRIIVSSATLQAEEFLRFF 187


>gi|444428160|ref|ZP_21223510.1| ATP-dependent RNA helicase HrpA, partial [Vibrio campbellii CAIM
           519 = NBRC 15631]
 gi|444238622|gb|ELU50219.1| ATP-dependent RNA helicase HrpA, partial [Vibrio campbellii CAIM
           519 = NBRC 15631]
          Length = 1226

 Score =  263 bits (673), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 231/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 109 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 168

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 169 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 221

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 222 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHTGRRIVLATN 277

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 278 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 337

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 338 RLYSEEDFESRTEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 397

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D+K+R+TS+GR L+ LP+D  L +M++       +  V+ +AA LS+Q 
Sbjct: 398 EELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMIIAAALSIQD 457

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   K       D LT +N +
Sbjct: 458 PRERPSDKQQSSDDKHKRFFHEDSDFLTFVNLW 490



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 329 GRVEEGICIRLYSEEDFESRTEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 388

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D+K+R+T++GR L+ LP+D  L +M++       +  +++
Sbjct: 389 NIQDGVRLLEELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMI 448

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 449 IAAALSIQ--DPRER 461



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 6   LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 65

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 66  SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 108



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 109  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 168

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 169  HFNNAPIIEVSGRT 182


>gi|425065631|ref|ZP_18468751.1| HrpA-like helicase [Pasteurella multocida subsp. gallicida P1059]
 gi|404384007|gb|EJZ80452.1| HrpA-like helicase [Pasteurella multocida subsp. gallicida P1059]
          Length = 1304

 Score =  263 bits (673), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 169/496 (34%), Positives = 270/496 (54%), Gaps = 37/496 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE    + ++L       IL  +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVE--NEEQDQLQA-----ILDAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ + K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQDLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   NI+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRNIQDGIKLL 472

Query: 609 TQHGA-------IDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +  A          K ++T  G+ L+ LPVD  L KML+     + +  V+ + + LS+
Sbjct: 473 EELEAFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKLNCLHEVMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYK----EWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN ++    +   + K++ R  + C++  
Sbjct: 533 QDPRERPQEKQQSADDKHRRFADKKSDFLAFLNLWQFIQTQQKALSKNQFR--RLCQKDY 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL-ITDIPGPDASLSSRERALRHGEIKLLQAIKRKKA 776
           +   R  E   +  Q +  + + GL I   P   A + +   AL  G   LL  I  K++
Sbjct: 591 LNYLRIREWQDIYHQIRLTVREMGLPINSQPAEYAQIHT---ALLSG---LLSHIGMKES 644

Query: 777 EEAPKRRKMLKADNAY 792
           E++    + L A NA+
Sbjct: 645 EKS----QYLGARNAH 656



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 3/112 (2%)

Query: 29  MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IAC 85
           +K  E   +LPV+Q K EI   + + +VV+IAG+TG GK+TQ+P+  ++ G      I  
Sbjct: 74  VKTIEFPENLPVSQRKAEIQKLISQHQVVVIAGETGSGKTTQLPKMCLELGCGTKGLIGH 133

Query: 86  TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           TQPRRIA  S++ R+A E  ++  +LVGY++RF     + T +  +T+G+LL
Sbjct: 134 TQPRRIAARSVASRIAEELKTELGDLVGYKVRFNDQISDNTMVKLMTDGILL 185



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   N
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRN 464

Query: 869 IESSVRSLTQHGA-------IDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L +  A          K ++T  G+ L+ LPVD  L KML+     + +  ++
Sbjct: 465 IQDGIKLLEELEAFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKLNCLHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 43.5 bits (101), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYL 219


>gi|153831958|ref|ZP_01984625.1| ATP-dependent helicase HrpA [Vibrio harveyi HY01]
 gi|148871956|gb|EDL70779.1| ATP-dependent helicase HrpA [Vibrio harveyi HY01]
          Length = 1338

 Score =  263 bits (673), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 231/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 221 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 280

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 281 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 333

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 334 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHTGRRIVLATN 389

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 390 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 449

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 450 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 509

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D+K+R+TS+GR L+ LP+D  L +M++       +  V+ +AA LS+Q 
Sbjct: 510 EELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMIIAAALSIQD 569

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   K       D LT +N +
Sbjct: 570 PRERPSDKQQSSDDKHKRFFHEDSDFLTFVNLW 602



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 83/134 (61%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   N
Sbjct: 442 RVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRN 501

Query: 869 IESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI     D+K+R+T++GR L+ LP+D  L +M++       +  ++++
Sbjct: 502 IQDGVRLLEELGAINAEAKDAKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMII 561

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 562 AAALSIQ--DPRER 573



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 118 LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 177

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 178 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 220



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 221  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 280

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 281  HFNNAPIIEVSGRT 294



 Score = 40.4 bits (93), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 221 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 254


>gi|448747757|ref|ZP_21729412.1| RNA helicase, ATP-dependent DEAH box, HrpA type [Halomonas
           titanicae BH1]
 gi|445564700|gb|ELY20817.1| RNA helicase, ATP-dependent DEAH box, HrpA type [Halomonas
           titanicae BH1]
          Length = 1348

 Score =  263 bits (673), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 163/473 (34%), Positives = 261/473 (55%), Gaps = 39/473 (8%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI++E F  
Sbjct: 197 AETQHDPLLLRYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIITSATIDVERFAK 256

Query: 369 YFNRI---AKIIKVPGRLYPIQLEYHPIV-----ELDRTKSEKLDPGPYIRILSIIDKKY 420
           +F      A +++V GR YP+++ Y P+V     E DRT  E +       + ++ + + 
Sbjct: 257 HFGTAKTPAPVVEVTGRTYPVEVHYRPLVRDEDDEEDRTLQEGI-------LHAVEEIEA 309

Query: 421 PRTERG------DVLIFMSG---ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471
              E+G      DVL+F+ G   I E +  +R A+      +G  +LPL++ LS EEQ+R
Sbjct: 310 VEREKGWLHGPRDVLVFLPGEREIRETADTLRRAE-----LKGTEILPLYARLSNEEQNR 364

Query: 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKAS 531
           VF  AP   R+ +++TN+AETS+T+ GIR+V+D G V+   Y   +K+  L    +S+AS
Sbjct: 365 VF--APHRGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRSKIQRLPVEAVSQAS 422

Query: 532 AEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFP 591
           A QRKGR GR   GVC RLYSEE +     ++ PEI+R ++ S++LS++ + LGD+  FP
Sbjct: 423 ANQRKGRCGRIAEGVCIRLYSEEDFLSRPGFTDPEIQRTNLASVILSMLGLKLGDIEAFP 482

Query: 592 FLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDT 651
           F++ P +  ++   R L + GA+D K+R++ LGR L+ LP+D  L +M++ G+ F  +  
Sbjct: 483 FVDPPDSRFVKDGFRLLFELGAVDDKQRLSPLGRKLARLPIDPRLARMVLAGAEFGSLRD 542

Query: 652 VLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDR----- 706
           VL + + L++Q P      +    + A +       D + +LN    W G++  R     
Sbjct: 543 VLIVVSALAIQDPRDRPTDKRQAADQAHQRWHDPDSDFVALLNL---WHGIENAREALSG 599

Query: 707 VRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERA 759
            + ++WC+   I   R  E      Q +Q+L D  +    P P     S E+A
Sbjct: 600 NQLRRWCREHYINYLRMREWHDTFRQLRQLLRDMDIDVPAPPPRNEDESEEQA 652



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 82/132 (62%), Gaps = 2/132 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLYSEE +     ++ PEI+R ++ S++LS++ + LGD+  FPF++ P + 
Sbjct: 431 GRIAEGVCIRLYSEEDFLSRPGFTDPEIQRTNLASVILSMLGLKLGDIEAFPFVDPPDSR 490

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            ++   R L + GA+D K+R++ LGR L+ LP+D  L +M++ G+ F  +  +L++  AL
Sbjct: 491 FVKDGFRLLFELGAVDDKQRLSPLGRKLARLPIDPRLARMVLAGAEFGSLRDVLIVVSAL 550

Query: 928 NFGAIDSKERVT 939
                D ++R T
Sbjct: 551 AIQ--DPRDRPT 560



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LPV + +++I++ +   +VV++AG+TG GK+TQ+P+  ++ G  R   I  TQPRR+A  
Sbjct: 94  LPVVERREDIVNAIRDHQVVVVAGETGSGKTTQLPKMCLELGRGRRGLIGHTQPRRLAAR 153

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E        VGYQ+RF       T +  +T+G+LL
Sbjct: 154 SVASRLAEELEVSLGEQVGYQVRFTDQSSPTTLVKLMTDGILL 196



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI++E F  +F 
Sbjct: 202  DPLLLRYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIITSATIDVERFAKHFG 259



 Score = 43.1 bits (100), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 975  LALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDS 1034
            L    GA+D K+R++ LGR L+ LP+D  L +M++ G+ F  +  +L++  AL     D 
Sbjct: 498  LLFELGAVDDKQRLSPLGRKLARLPIDPRLARMVLAGAEFGSLRDVLIVVSALAIQ--DP 555

Query: 1035 KERVT 1039
            ++R T
Sbjct: 556  RDRPT 560



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 34/53 (64%)

Query: 1025 LALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 1077
            L    GA+D K+R++ LGR L+ LP+D  L +M++ G+ F  +  +L++  AL
Sbjct: 498  LLFELGAVDDKQRLSPLGRKLARLPIDPRLARMVLAGAEFGSLRDVLIVVSAL 550


>gi|378774476|ref|YP_005176719.1| ATP-dependent RNA helicase HrpA [Pasteurella multocida 36950]
 gi|356597024|gb|AET15750.1| ATP-dependent RNA helicase HrpA [Pasteurella multocida 36950]
          Length = 1279

 Score =  263 bits (673), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 169/496 (34%), Positives = 269/496 (54%), Gaps = 37/496 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 161 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE    + ++L       IL  +D+      RGD+
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPVVE--NEEQDQLQA-----ILDAVDELQAEG-RGDI 271

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ + K     +LPL + LS +EQ++ FH  P GL + +++TN
Sbjct: 272 LIFMNGEREIRDTAEALQKQDLKHTE--ILPLFARLSAQEQNKNFH--PSGLNRIVLATN 327

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 328 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 387

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   NI+  ++ L
Sbjct: 388 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRNIQDGIKLL 447

Query: 609 TQ-------HGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +             K ++T  G+ L+ LPVD  L KML+    F+ +  V+ + + LS+
Sbjct: 448 EELEVFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKFNCLHEVMIIVSALSI 507

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYK----EWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN ++    +   + K++ R  + C++  
Sbjct: 508 QDPRERPQEKQQSADDKHRRFADKKSDFLAFLNLWQFIQTQQKALSKNQFR--RLCQKDY 565

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL-ITDIPGPDASLSSRERALRHGEIKLLQAIKRKKA 776
           +   R  E   +  Q +  + + GL I   P   A + +   AL  G   LL  I  K++
Sbjct: 566 LNYLRIREWQDIYHQIRLTVREMGLPINSQPAEYAQIHT---ALLSG---LLSHIGMKES 619

Query: 777 EEAPKRRKMLKADNAY 792
           E++    + L A NA+
Sbjct: 620 EKS----QYLGARNAH 631



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 72/114 (63%), Gaps = 3/114 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---I 83
           + +K  E   +LPV+Q K EI   + + +VV+IAG+TG GK+TQ+P+  ++ G      I
Sbjct: 47  SAVKTIEFPENLPVSQRKAEIQKLISQHQVVVIAGETGSGKTTQLPKMCLELGRGTKGLI 106

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             TQPRRIA  S++ R+A E  S+  +LVGY++RF     + T +  +T+G+LL
Sbjct: 107 GHTQPRRIAARSVASRIAEELKSELGDLVGYKVRFNDQISDNTMVKLMTDGILL 160



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   N
Sbjct: 380 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRN 439

Query: 869 IESSVRSLTQ-------HGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L +             K ++T  G+ L+ LPVD  L KML+    F+ +  ++
Sbjct: 440 IQDGIKLLEELEVFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKFNCLHEVM 499

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 500 IIVSALSIQ--DPRER 513



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 161  AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234



 Score = 43.5 bits (101), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD LI+DE HER L  DF+LG +
Sbjct: 161 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYL 194


>gi|294626840|ref|ZP_06705432.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598854|gb|EFF42999.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 1371

 Score =  263 bits (673), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 249/443 (56%), Gaps = 32/443 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A D +LSSYD +++DE HER L+ DFLLG +K LLH   ++K+I+ SATI+ E F  
Sbjct: 180 AEIAGDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRPDLKLIVTSATIDTERFAR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGP------YIRILSIIDKKYPR 422
           +F+  A +I V GR +P+++ Y P+ E D   +++ + G          I++ ID+    
Sbjct: 240 HFDN-APVISVEGRTFPVEVRYRPL-EGDTGDTDEGEHGSDGERSVNDAIVAAIDEITRI 297

Query: 423 TERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL 480
             RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QDRVF+  P   
Sbjct: 298 DPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDRVFNPGPR-- 351

Query: 481 RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540
           R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR GR G
Sbjct: 352 RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMGRCG 411

Query: 541 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 600
           R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP    
Sbjct: 412 RIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDERA 471

Query: 601 IESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           +    + L + GAID++ R+T+ GR ++ LPVD+ L +MLV       +  ++ +AA L 
Sbjct: 472 VADGWQQLLELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAFLG 531

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDRVRSK--K 711
           +Q P      R P+   A     +   D        L + +AY++   V +D  +SK   
Sbjct: 532 IQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDLTQSKLRD 584

Query: 712 WCKRRGIEEQRFYEVTKLRSQFK 734
           WC R  +   R  E  +L  Q +
Sbjct: 585 WCNRHFLGFLRMREWRELHRQLR 607



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 411 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 470

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 471 AVADGWQQLLELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 528

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 529 FLGIQDPRER 538



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 71/110 (64%), Gaps = 3/110 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           N LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  NQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
             +++ RVA E  +     VG+Q+RF     ++++I F+T+G+LL + +G
Sbjct: 135 TRAVAARVADELKTPLGTTVGFQVRFTDRVSDQSRIKFMTDGILLAEIAG 184



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 46/63 (73%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A D +LSSYD +++DE HER L+ DFLLG +K LLH   ++K+I+ SATI+ E F  
Sbjct: 180  AEIAGDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRPDLKLIVTSATIDTERFAR 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 47.0 bits (110), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 27/39 (69%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++A D +LSSYD +I+DE HER L  DFLLG +   LH
Sbjct: 180 AEIAGDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLH 218



 Score = 44.3 bits (103), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 480  LELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAAFLGIQDPRE 537

Query: 1037 R 1037
            R
Sbjct: 538  R 538



 Score = 42.0 bits (97), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M+++
Sbjct: 480  LELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 526


>gi|384420232|ref|YP_005629592.1| ATP-dependent helicase [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|353463145|gb|AEQ97424.1| ATP-dependent helicase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 1373

 Score =  263 bits (673), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 246/441 (55%), Gaps = 26/441 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR-----------ILSIID 417
           +F+  A +I V GR +P+++ Y P+ E D   S   D G +             I++ ID
Sbjct: 240 HFDN-APVINVEGRTFPVEVRYRPL-EGDTGDS---DDGQHSSGRDGERSVNDAIVAAID 294

Query: 418 KKYPRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHY 475
           +      RGDVL+F+ G  EI    +A   ++Y E      V+PL++ LS  +QDRVF+ 
Sbjct: 295 EITRIDPRGDVLMFLPGEREIRDAHQALERRKYRETE----VVPLYARLSAADQDRVFNP 350

Query: 476 APEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQR 535
            P   R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR
Sbjct: 351 GPR--RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQR 408

Query: 536 KGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEA 595
            GR GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEA
Sbjct: 409 MGRCGRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEA 468

Query: 596 PPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           P    +    + L + GAID++ R+T+ GR ++ LPVD+ L +MLV       +  ++ +
Sbjct: 469 PDERAVADGWQQLLELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 528

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWC 713
           AA L +Q P    A      + A         + + +L  +  +  V +D  +SK   WC
Sbjct: 529 AAFLGIQDPRERPAEAREAADNAHALFADARSEFVGILRLWDAYRQVHEDLTQSKLRDWC 588

Query: 714 KRRGIEEQRFYEVTKLRSQFK 734
            R  +   R  E  +L  Q +
Sbjct: 589 NRHFLGFLRMREWRELHRQLR 609



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 413 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 472

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 473 AVADGWQQLLELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 530

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 531 FLGIQDPRER 540



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           N LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  NQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +    +VG+Q+RF     E+++I F+T+G+LL
Sbjct: 135 ARAVAARVAEELKTPLGTIVGFQVRFTDRVSEQSRIKFMTDGILL 179



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 48/63 (76%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 46.6 bits (109), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++A+D +LS+YD +I+DE HER L  DFLLG +   LH
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLH 218



 Score = 44.3 bits (103), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 482  LELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAAFLGIQDPRE 539

Query: 1037 R 1037
            R
Sbjct: 540  R 540



 Score = 41.6 bits (96), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M+++
Sbjct: 482  LELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 528


>gi|294884855|gb|ADF47438.1| DEAH box polypeptide 8-like protein A, partial [Dugesia japonica]
          Length = 664

 Score =  263 bits (672), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 147/440 (33%), Positives = 253/440 (57%), Gaps = 25/440 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E+  D  L +Y V+++DE HER +  D L G++KCL    +++K+I+ SAT+  + F  Y
Sbjct: 151 ELQTDPLLKAYSVIIIDEAHERTIQTDALFGILKCLTKKRSDLKLIISSATLQADDFSKY 210

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A+I K+PGRLY +++++       ++++E +D      +++ + K + +   GD+L
Sbjct: 211 FYN-AEIFKIPGRLYEVKIKFSK-----KSENEYID-----EVVNKVLKIHKKNRHGDIL 259

Query: 430 IFMSGISEI---SSIVRAAQEYNEKS-QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F+ G  EI    +++R    Y++KS    ++LP +S L   E  ++F   P+  RK +V
Sbjct: 260 VFLPGQEEIEACCNMIRKRNRYSDKSLPNLLILPAYSALVKRELSKIFIPTPKNYRKVVV 319

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETS+TI+GI +V+D G VK+  Y+    +  L    ISKA A+QR GRAGR G G
Sbjct: 320 ATNIAETSLTIEGIVYVIDPGLVKQKVYNHMLSIDQLITSDISKAQADQRAGRAGRVGRG 379

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           VCYRL+SE++Y  + EYS PEI+R ++ + +L L  +G+ D+  F  ++ P  E ++ ++
Sbjct: 380 VCYRLFSEKKYRKMLEYSIPEIQRANLANTVLQLKSIGIRDIENFDLIDHPGRERLQEAI 439

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
           + L    A+D    +T LG++++  P+D  L K+L+  S  +  + +L++ A+L VQ+ F
Sbjct: 440 KELIDIAALDKTGDLTDLGKYMAAFPLDPILSKILIMSSYKNCSEELLTIVAMLCVQNLF 499

Query: 666 ---TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
              TN+ F   +    ++EL    GD +T+L  Y  W    +D   S  WC+   I    
Sbjct: 500 EKPTNQMF---EANRKKQELNRPQGDHITLLYIYIMW----RDSDYSNHWCEDNFIRYST 552

Query: 723 FYEVTKLRSQFKQVLGDSGL 742
             +   +R+Q  +++    L
Sbjct: 553 LKQAQNIRNQLIEIMNRCRL 572



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 74/110 (67%), Gaps = 3/110 (2%)

Query: 33  ETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPR 89
           E Q +LPV + K+E++  +   ++VI+ GDTGCGKSTQIPQYL++AG+     IACTQPR
Sbjct: 42  EIQRNLPVYKCKKELLKAIDNNQIVIVTGDTGCGKSTQIPQYLLKAGYTANGNIACTQPR 101

Query: 90  RIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           R+  ISL+ RV  E        VGY IRFE      TK+ ++T+G+L+R+
Sbjct: 102 RVGAISLANRVCEELDCYLGGEVGYSIRFENVTSSITKLHYLTDGVLIRE 151



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 65/104 (62%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R G GVCYRL+SE++Y  + EYS PEI+R ++ + +L L  +G+ D+  F  ++ P  E 
Sbjct: 375 RVGRGVCYRLFSEKKYRKMLEYSIPEIQRANLANTVLQLKSIGIRDIENFDLIDHPGRER 434

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGS 912
           ++ +++ L    A+D    +T LG++++  P+D  L K+L+  S
Sbjct: 435 LQEAIKELIDIAALDKTGDLTDLGKYMAAFPLDPILSKILIMSS 478



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            ++  D  L +Y V+++DE HER +  D L G++KCL    +++K+I+ SAT+  + F  Y
Sbjct: 151  ELQTDPLLKAYSVIIIDEAHERTIQTDALFGILKCLTKKRSDLKLIISSATLQADDFSKY 210

Query: 1175 F 1175
            F
Sbjct: 211  F 211


>gi|334143659|ref|YP_004536815.1| ATP-dependent helicase HrpA [Thioalkalimicrobium cyclicum ALM1]
 gi|333964570|gb|AEG31336.1| ATP-dependent helicase HrpA [Thioalkalimicrobium cyclicum ALM1]
          Length = 1317

 Score =  263 bits (672), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 164/481 (34%), Positives = 263/481 (54%), Gaps = 27/481 (5%)

Query: 276 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHG 335
           L  Y V   D++HE  L      G++        E+  D FLS YD +++DE HER ++ 
Sbjct: 152 LVGYQVRFHDQVHETSLIKVMTDGIL------LAEIQNDRFLSQYDTIIIDEAHERSVNI 205

Query: 336 DFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAK---------IIKVPGRLYPI 386
           DFLLG++K LL    ++K+I+ SATI+ + F  +F +  +         I++V GR YP+
Sbjct: 206 DFLLGILKQLLPKRPDLKVIITSATIDTQRFAEHFKQPGQPGQPSLAVPIVEVSGRTYPV 265

Query: 387 QLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQ 446
           ++ Y P+ ++       ++      I+  +D+       GDVL+F  G  +I     A +
Sbjct: 266 EVRYRPLGQVAMDDGTVIEQDLTNGIIEALDELAAHDPFGDVLVFQIGERDIKETAEALR 325

Query: 447 EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSG 506
           + N K+    V+PL++ LS+ EQ++VF  +P+  R+ I+STN+AETS+T+ GIR+V+D G
Sbjct: 326 KQNLKNTD--VIPLYARLSMAEQNKVFQTSPK--RRIILSTNVAETSLTVPGIRYVIDPG 381

Query: 507 KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPE 566
            V+   Y V +K+  L    IS+ASA QRKGR GR   G+C RLYSE+ ++  + ++ PE
Sbjct: 382 LVRISRYSVRSKVQRLPIERISQASANQRKGRCGRVADGICIRLYSEDDFNARSAFTDPE 441

Query: 567 IRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRF 626
           I R S+ S+LL++  + LG V+ FPF+E P  + +    R L + GA+D K+ +T  GR 
Sbjct: 442 IHRTSLSSVLLNMTQLKLGKVQTFPFIEPPEEKAVNDGYRQLIEIGALDDKKHLTPAGRD 501

Query: 627 LSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETAR---KELE 683
           L+ LP++  + KM++     + +  VL +AA +S+Q P   R   +   + AR   K+ E
Sbjct: 502 LARLPLEPRIAKMVLEAEKNNVLAEVLIIAAAISIQDP---RDINEQTMQAARAKHKQWE 558

Query: 684 SNHGDPLTVLNAYK--EWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSG 741
               D L  LN ++  E+      + + +K CK   +   R  E   L  Q K  L   G
Sbjct: 559 DPCSDFLFFLNLWRFYEYQARHLSQSKLRKLCKTNYLSYLRLREWHDLFHQLKVSLKSIG 618

Query: 742 L 742
           L
Sbjct: 619 L 619



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 79/132 (59%), Gaps = 5/132 (3%)

Query: 9   WKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKS 68
           W   L+  LD  Q  K   L+   +  ++LPV   + E++  +   +VV+IAG+TG GK+
Sbjct: 49  WCERLQRSLDKVQARK--ALVPTIDYDSALPVVGRRDELLQLIKNHQVVVIAGETGSGKT 106

Query: 69  TQIPQYLVQAG---FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREK 125
           TQIP+  ++AG     RI CTQPRR+A  S+++R+A E  S    LVGYQ+RF     E 
Sbjct: 107 TQIPKLCLEAGRGVMGRIGCTQPRRLAARSVAERLAEELGSSLGELVGYQVRFHDQVHET 166

Query: 126 TKIVFITEGLLL 137
           + I  +T+G+LL
Sbjct: 167 SLIKVMTDGILL 178



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 73/122 (59%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ ++  + ++ PEI R S+ S+LL++  + LG V+ FPF+E P  +
Sbjct: 415 GRVADGICIRLYSEDDFNARSAFTDPEIHRTSLSSVLLNMTQLKLGKVQTFPFIEPPEEK 474

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    R L + GA+D K+ +T  GR L+ LP++  + KM++     + +  +L++  A+
Sbjct: 475 AVNDGYRQLIEIGALDDKKHLTPAGRDLARLPLEPRIAKMVLEAEKNNVLAEVLIIAAAI 534

Query: 928 NF 929
           + 
Sbjct: 535 SI 536



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 29/201 (14%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FLS YD +++DE HER ++ DFLLG++K LL    ++K+I+ SATI+ + F  
Sbjct: 179  AEIQNDRFLSQYDTIIIDEAHERSVNIDFLLGILKQLLPKRPDLKVIITSATIDTQRFAE 238

Query: 1174 YFNRIAKDLLSGSTARSHKDVTILKVILASGLYP---------QVAIGDEFNTSETVKEA 1224
            +F +       G   +    V I++V  +   YP         QVA+ D     + +   
Sbjct: 239  HFKQ------PGQPGQPSLAVPIVEV--SGRTYPVEVRYRPLGQVAMDDGTVIEQDLTNG 290

Query: 1225 LFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLK---LPGRNVISSKHQLLVYM 1281
            +    D+   +  PF        V +I E DI +    L+   L   +VI     L   +
Sbjct: 291  IIEALDE-LAAHDPFGDVL----VFQIGERDIKETAEALRKQNLKNTDVIP----LYARL 341

Query: 1282 SLLETSKPFLVNCLRMPALQT 1302
            S+ E +K F  +  R   L T
Sbjct: 342  SMAEQNKVFQTSPKRRIILST 362



 Score = 43.1 bits (100), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 11/79 (13%)

Query: 192 AYEIEEEEEEEEGERLESMDANEVEFRLK-HDPKQVQVATDN----------FLSSYDIL 240
           A  + E   EE G  L  +   +V F  + H+   ++V TD           FLS YD +
Sbjct: 134 ARSVAERLAEELGSSLGELVGYQVRFHDQVHETSLIKVMTDGILLAEIQNDRFLSQYDTI 193

Query: 241 ILDEVHERHLYGDFLLGVI 259
           I+DE HER +  DFLLG++
Sbjct: 194 IIDEAHERSVNIDFLLGIL 212


>gi|424032726|ref|ZP_17772142.1| ATP-dependent helicase HrpA [Vibrio cholerae HENC-01]
 gi|408875336|gb|EKM14483.1| ATP-dependent helicase HrpA [Vibrio cholerae HENC-01]
          Length = 1278

 Score =  263 bits (672), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 231/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 221 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 273

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 274 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 329

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 330 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 389

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 390 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 449

Query: 609 TQHGAID-----SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI+     SK+R+TS+GR L+ LP+D  L +M++       +  V+ +AA LS+Q 
Sbjct: 450 EELGAINSDAKESKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMIIAAALSIQD 509

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   K       D LT +N +
Sbjct: 510 PRERPSDKQQSSDDKHKRFFHEDSDFLTFVNLW 542



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 381 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 440

Query: 868 NIESSVRSLTQHGAID-----SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI+     SK+R+T++GR L+ LP+D  L +M++       +  +++
Sbjct: 441 NIQDGVRLLEELGAINSDAKESKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMI 500

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 501 IAAALSIQ--DPRER 513



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 58  LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 160



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234



 Score = 40.0 bits (92), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 194


>gi|424042213|ref|ZP_17779981.1| ATP-dependent helicase HrpA [Vibrio cholerae HENC-02]
 gi|408889852|gb|EKM28147.1| ATP-dependent helicase HrpA [Vibrio cholerae HENC-02]
          Length = 1278

 Score =  263 bits (672), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 231/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 221 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 273

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 274 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 329

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 330 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 389

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 390 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 449

Query: 609 TQHGAID-----SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI+     SK+R+TS+GR L+ LP+D  L +M++       +  V+ +AA LS+Q 
Sbjct: 450 EELGAINSDAKESKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMIIAAALSIQD 509

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   K       D LT +N +
Sbjct: 510 PRERPSDKQQSSDDKHKRFFHEDSDFLTFVNLW 542



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 381 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 440

Query: 868 NIESSVRSLTQHGAID-----SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI+     SK+R+T++GR L+ LP+D  L +M++       +  +++
Sbjct: 441 NIQDGVRLLEELGAINSDAKESKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMI 500

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 501 IAAALSIQ--DPRER 513



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 58  LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 160



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234



 Score = 40.0 bits (92), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 194


>gi|416758848|ref|ZP_11863863.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323260234|gb|EGA43856.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
          Length = 676

 Score =  263 bits (672), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 461

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 462 IQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 521

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 522 TSALSIQ--DPRER 533



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|424043334|ref|ZP_17780972.1| ATP-dependent helicase HrpA [Vibrio cholerae HENC-03]
 gi|408889284|gb|EKM27709.1| ATP-dependent helicase HrpA [Vibrio cholerae HENC-03]
          Length = 1278

 Score =  263 bits (672), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 231/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 221 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 273

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 274 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 329

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 330 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 389

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 390 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 449

Query: 609 TQHGAID-----SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI+     SK+R+TS+GR L+ LP+D  L +M++       +  V+ +AA LS+Q 
Sbjct: 450 EELGAINSDAKESKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMIIAAALSIQD 509

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   K       D LT +N +
Sbjct: 510 PRERPSDKQQSSDDKHKRFFHEDSDFLTFVNLW 542



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 381 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 440

Query: 868 NIESSVRSLTQHGAID-----SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI+     SK+R+T++GR L+ LP+D  L +M++       +  +++
Sbjct: 441 NIQDGVRLLEELGAINSDAKESKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMI 500

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 501 IAAALSIQ--DPRER 513



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G  +   I  TQPRR+A  
Sbjct: 58  LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKSGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 160



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234



 Score = 40.0 bits (92), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 194


>gi|238911973|ref|ZP_04655810.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 1300

 Score =  263 bits (672), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 78/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P
Sbjct: 52  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLP 111

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    T + 
Sbjct: 112 KICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVK 171

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 172 LMTDGILL 179



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|383310448|ref|YP_005363258.1| ATP-dependent RNA helicase HrpA [Pasteurella multocida subsp.
           multocida str. HN06]
 gi|380871720|gb|AFF24087.1| ATP-dependent RNA helicase HrpA [Pasteurella multocida subsp.
           multocida str. HN06]
          Length = 1279

 Score =  263 bits (672), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 248/445 (55%), Gaps = 26/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 161 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE  + + ++L       IL  +D+      RGD+
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPVVE--KEEQDQLQA-----ILDAVDELQAEG-RGDI 271

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ + K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 272 LIFMNGEREIRDTAEALQKQDLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 327

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 328 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 387

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   NI+  ++ L
Sbjct: 388 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRNIQDGIKLL 447

Query: 609 TQHGA-------IDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +  A          K ++T  G+ L+ LPVD  L KML+     + +  V+ + + LS+
Sbjct: 448 EELEAFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKLNCLHEVMIIVSALSI 507

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYK----EWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN ++    +   + K++ R  + C++  
Sbjct: 508 QDPRERPQEKQQSADDKHRRFADKKSDFLAFLNLWQFIQTQQKALSKNQFR--RLCQKDY 565

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   +  Q +  + + GL
Sbjct: 566 LNYLRIREWQDIYHQIRLTVREMGL 590



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 3/114 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---I 83
           + +K  E   +LPV+Q K EI   + + +VV+IAG+TG GK+TQ+P+  ++ G      I
Sbjct: 47  SAVKTIEFPENLPVSQRKAEIQKLISQHQVVVIAGETGSGKTTQLPKMCLELGRGTKGLI 106

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             TQPRRIA  S++ R+A E  ++  +LVGY++RF     + T +  +T+G+LL
Sbjct: 107 GHTQPRRIAARSVASRIAEELKTELGDLVGYKVRFNDQISDNTMVKLMTDGILL 160



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   N
Sbjct: 380 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRN 439

Query: 869 IESSVRSLTQHGA-------IDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L +  A          K ++T  G+ L+ LPVD  L KML+     + +  ++
Sbjct: 440 IQDGIKLLEELEAFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKLNCLHEVM 499

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 500 IIVSALSIQ--DPRER 513



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 161  AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234



 Score = 43.5 bits (101), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD LI+DE HER L  DF+LG +
Sbjct: 161 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYL 194


>gi|197264950|ref|ZP_03165024.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197243205|gb|EDY25825.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 1294

 Score =  263 bits (672), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 174 AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 233

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 234 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 286

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 287 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 342

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 343 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 402

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 403 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 462

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 463 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 522

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 523 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 581

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 582 YLRVREWQDIYTQLRQVVKELGI 604



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 395 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 454

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 455 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 514

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 515 ITSALSIQ--DPRER 527



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 69  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 128

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 129 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 173



 Score = 63.2 bits (152), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 174  AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 233

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 234  HFNNAPIIEVSGRT 247


>gi|348561099|ref|XP_003466350.1| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase
           DHX33-like [Cavia porcellus]
          Length = 712

 Score =  263 bits (672), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 257/443 (58%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y+ ++LDE HER +H D L GV+K       E+     K+++MSAT++++
Sbjct: 183 EAISDSLLRKYNCIILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVVVMSATMDVD 242

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 243 LFSQYFNG-APVLYLEGRQHPIQIFY--------TKQPQHD---YLHAALVSVFQIHQEA 290

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 291 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQAA 348

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 349 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 408

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   GVCYRLY+EE++    + + PEI+R ++  ++L L+ M + DV  F F+  P
Sbjct: 409 GRAGREDSGVCYRLYTEEEFEKFDKMTVPEIQRCNLAGVMLQLLAMKVPDVLTFDFMSKP 468

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 469 SPDHIQAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPKFAKTILLSPKFHCTEEIL 528

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +    ++   +K WC
Sbjct: 529 TIVSLLSVDSVLYNPPARREEVQNVRKKFISSEGDHITLLNIYRTF----RNTGGNKDWC 584

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    V ++R+Q +++
Sbjct: 585 KENFVNSKNMMLVAEVRAQLREI 607



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL +AG  R   I  TQPRR+
Sbjct: 76  RRSLPIFQARGQLLAQLRNLDSAVLIGETGSGKTTQIPQYLYEAGIGRQGIIGVTQPRRV 135

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RFE    E T+I F+T+G+LLR+
Sbjct: 136 AAISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLRE 183



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 68/118 (57%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   GVCYRLY+EE++    + + PEI+R ++  ++L L+ M + DV  F F+  P  ++
Sbjct: 413 REDSGVCYRLYTEEEFEKFDKMTVPEIQRCNLAGVMLQLLAMKVPDVLTFDFMSKPSPDH 472

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 473 IQAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPKFAKTILLSPKFHCTEEILTI 530



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 12/113 (10%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      +E+  E G+      R E + + +   +   D   ++ A +D+ L  Y+ +
Sbjct: 137  AISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLREAISDSLLRKYNCI 196

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHTYFN 1176
            +LDE HER +H D L GV+K       E     +K+++MSAT++++LF  YFN
Sbjct: 197  ILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVVVMSATMDVDLFSQYFN 249


>gi|161613894|ref|YP_001587859.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363258|gb|ABX67026.1| hypothetical protein SPAB_01631 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1295

 Score =  263 bits (672), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 175 AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 234

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 235 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 287

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 288 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 343

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 344 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 403

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 404 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 463

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 464 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVRETMIITSALSIQ 523

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 524 DPRERPVDKQQASDEKHRRFHDKESDFLVFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 582

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 583 YLRVREWQDIYTQLRQVVKELGI 605



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 396 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 455

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 456 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVRETMI 515

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 516 ITSALSIQ--DPRER 528



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 70  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 129

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 130 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 174



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 175  AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 234

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 235  HFNNAPIIEVSGRT 248


>gi|303320573|ref|XP_003070286.1| Helicase associated domain (HA2) containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240109972|gb|EER28141.1| Helicase associated domain (HA2) containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 669

 Score =  263 bits (672), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 164/471 (34%), Positives = 256/471 (54%), Gaps = 38/471 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  LS Y V+++DE HER L  D LLG++K ++    E++II+ SAT+  E F  +
Sbjct: 127 EALVDPLLSRYSVIMVDEAHERSLSTDILLGILKKIMKKRPELRIIVSSATLQAEEFLRF 186

Query: 370 F--------------NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI 415
           F               ++ +I+ + GR+YP+   +     L+    + ++     R +  
Sbjct: 187 FAEDQFNAENGSEMGGKVGRILSLEGRMYPVDCLF-----LESPAEDYVE-----RAIKT 236

Query: 416 IDKKYPRTERGDVLIFMSGISEI----SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471
           +   +     GD+L+F++G  EI      I   A     KSQ  + LPL++ L+ E+Q  
Sbjct: 237 VFDIHAGETNGDILLFLTGREEIDLAIQKISERAASLPPKSQELLPLPLYAGLTTEQQLY 296

Query: 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKAS 531
           VF  APE  RK IV+TNIAE S+TIDGI FV+D G  K  +YD    + TL    ISKAS
Sbjct: 297 VFDPAPENTRKVIVATNIAEASVTIDGIVFVIDCGYAKLRAYDPNTGIDTLTAVPISKAS 356

Query: 532 AEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFP 591
           A QR GRAGRT PG C+RLY+EE Y+ L + S PEI+R ++  ++L L  +G+ ++ +F 
Sbjct: 357 ASQRAGRAGRTRPGKCFRLYTEESYACLPDASVPEIQRSNLAPVILQLKALGIDNIVRFD 416

Query: 592 FLEAPPAENIESSVRSLTQHGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQID 650
           F  +PPAE +  ++  L   GA+D   ++T  LG  +++L V+  + K+L+  S F  + 
Sbjct: 417 FFSSPPAELVVRALELLYSLGAVDEYAKLTKPLGIHMAELSVEPMMAKVLLNASTFGCLS 476

Query: 651 TVLSLAAVLSVQ-SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS 709
            +LS+AA+ SVQ S +  +       E+AR++     GD LT LN Y+ ++   K   + 
Sbjct: 477 EILSIAAMTSVQGSVWFQQEGDKKGMESARRKFAVEEGDHLTYLNVYQAFVTKGK---KD 533

Query: 710 KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERAL 760
            KWC+   +  +   +   +R+Q K+ L   G+       D +LSSR+  L
Sbjct: 534 SKWCRENSLNYKSMQKAVSIRAQLKRYLDRFGIQI-----DETLSSRKSQL 579



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 70/114 (61%), Gaps = 1/114 (0%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT PG C+RLY+EE Y+ L + S PEI+R ++  ++L L  +G+ ++ +F F  +PPAE 
Sbjct: 366 RTRPGKCFRLYTEESYACLPDASVPEIQRSNLAPVILQLKALGIDNIVRFDFFSSPPAEL 425

Query: 869 IESSVRSLTQHGAIDSKERVTT-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           +  ++  L   GA+D   ++T  LG  +++L V+  + K+L+  S F  +  +L
Sbjct: 426 VVRALELLYSLGAVDEYAKLTKPLGIHMAELSVEPMMAKVLLNASTFGCLSEIL 479



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACTQPRRIAC 93
           LP+AQ++  ++  V    V I+ G TG GK+TQ+PQ+L +AG+    ++IA TQPRR+A 
Sbjct: 22  LPIAQHRNSLLYVVENYPVTIVVGQTGSGKTTQLPQFLDKAGWCADGKQIAVTQPRRVAA 81

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            +++ RVA E        VGY IRFE      T+I F+T+GLLLR+
Sbjct: 82  TTVAARVAEEMRCSVGQEVGYSIRFEDVTSSATRIKFLTDGLLLRE 127



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  LS Y V+++DE HER L  D LLG++K ++    E++II+ SAT+  E F  +F
Sbjct: 131  DPLLSRYSVIMVDEAHERSLSTDILLGILKKIMKKRPELRIIVSSATLQAEEFLRFF 187


>gi|260914340|ref|ZP_05920809.1| ATP-dependent helicase HrpA [Pasteurella dagmatis ATCC 43325]
 gi|260631441|gb|EEX49623.1| ATP-dependent helicase HrpA [Pasteurella dagmatis ATCC 43325]
          Length = 1303

 Score =  263 bits (672), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 171/526 (32%), Positives = 281/526 (53%), Gaps = 37/526 (7%)

Query: 276 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHG 335
           L  Y V   D+I E  +      G++        E+ +D FL+ YD L++DE HER L+ 
Sbjct: 158 LVGYKVRFTDQISENTMVKLMTDGIL------LAEIQSDRFLNQYDTLIIDEAHERSLNN 211

Query: 336 DFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVE 395
           DF+LG +K LL    ++K+I+ SATI++E F  +FN  A II+V GR YP+++ Y P+VE
Sbjct: 212 DFILGYLKQLLPKRPDLKVIITSATIDVERFSKHFNN-APIIEVSGRTYPVEVRYRPVVE 270

Query: 396 LDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGW 455
            +  + ++L       IL  +D+      RGD+LIF++G  EI     A Q+ + K    
Sbjct: 271 TE--EQDQLQA-----ILDAVDELQAEG-RGDILIFLNGEREIRDTAEALQKQDLKQTE- 321

Query: 456 IVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDV 515
            +LPL + LS +EQ+++F+  P GL + +++TN+AETS+T+ GI++V+D G  +   Y  
Sbjct: 322 -ILPLFARLSAQEQNKIFN--PSGLNRIVLATNVAETSLTVPGIKYVIDPGTARISRYSY 378

Query: 516 TAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSL 575
             K+  L    IS+ASA QRKGR GR   G+C RLYSE+ ++   E++ PEI R ++ S+
Sbjct: 379 RTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFNNRPEFTDPEILRTNLASV 438

Query: 576 LLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQ-------HGAIDSKERVTSLGRFLS 628
           +L +  +GL D+  FPF++AP   NI+  ++ L +             + ++T +GR L+
Sbjct: 439 ILQMTALGLDDIDAFPFVDAPDKRNIQDGIKLLEELEAFHFVKAKFGERRQLTQVGRQLA 498

Query: 629 DLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGD 688
            LPVD  L KML+     + +  V+ + + LS+Q P      +    +   +       D
Sbjct: 499 QLPVDPRLAKMLLTAVKLNCLHEVMIIVSALSIQDPRERPQEKQQSADDKHRRFADKKSD 558

Query: 689 PLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDI 746
            L  LN ++     +K+  ++  ++ C++  +   R  E   +  Q +  + + GL   I
Sbjct: 559 FLAFLNLWQFIQTQQKELSKNQFRRLCQKDYLNYLRIREWQDIYHQIRLTVREMGL--PI 616

Query: 747 PGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAY 792
               A  S    AL  G   LL  I  K++E    +++ L A NA+
Sbjct: 617 NSQPAEYSQIHTALLSG---LLSHIGMKESE----KQQYLGARNAH 655



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 6/122 (4%)

Query: 22  KEKFS---TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA 78
           +E+F+   + +K  E   +LPV+Q K+EI   + + +VV+IAG+TG GK+TQ+P+  ++ 
Sbjct: 63  QERFNQRKSAVKNIEFPENLPVSQRKEEIQKLIAQHQVVVIAGETGSGKTTQLPKMCLEL 122

Query: 79  GFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
           G      I  TQPRRIA  S++ R+A E  ++  +LVGY++RF     E T +  +T+G+
Sbjct: 123 GLGTKGLIGHTQPRRIAARSVATRIAEELNTELGDLVGYKVRFTDQISENTMVKLMTDGI 182

Query: 136 LL 137
           LL
Sbjct: 183 LL 184



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 76/136 (55%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   N
Sbjct: 404 RVSEGICIRLYSEDDFNNRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRN 463

Query: 869 IESSVRSLTQ-------HGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L +             + ++T +GR L+ LPVD  L KML+     + +  ++
Sbjct: 464 IQDGIKLLEELEAFHFVKAKFGERRQLTQVGRQLAQLPVDPRLAKMLLTAVKLNCLHEVM 523

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 524 IIVSALSIQ--DPRER 537



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 49/74 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++ +D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 185  AEIQSDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 244

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 245  HFNNAPIIEVSGRT 258



 Score = 43.9 bits (102), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++ +D FL+ YD LI+DE HER L  DF+LG +
Sbjct: 185 AEIQSDRFLNQYDTLIIDEAHERSLNNDFILGYL 218


>gi|258621523|ref|ZP_05716556.1| ATP-dependent helicase HrpA [Vibrio mimicus VM573]
 gi|258586141|gb|EEW10857.1| ATP-dependent helicase HrpA [Vibrio mimicus VM573]
          Length = 1325

 Score =  263 bits (672), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 258/451 (57%), Gaps = 23/451 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 206 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 265

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSE--KLDPGPYIRILSIIDKKYPRTERG 426
           +F+  A II+V GR YP+++ Y P+   D ++S+  +L+ G +  +  + D+       G
Sbjct: 266 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDHDQLE-GIFQAVDELCDEGL-----G 318

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++
Sbjct: 319 DILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLA 374

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GRT  G+
Sbjct: 375 TNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIESVSQASANQRKGRCGRTEEGI 434

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR
Sbjct: 435 CIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVR 494

Query: 607 SLTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+
Sbjct: 495 LLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSI 554

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGI 718
           Q P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   +
Sbjct: 555 QDPRERPSDKQQASDEKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYL 613

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
              R  E   + +Q  Q   + G  + D PG
Sbjct: 614 NYLRVREWQDVYTQLHQSTREMGFKLNDEPG 644



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 428 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 487

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 488 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 547

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 548 IASALSIQ--DPRER 560



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 103 LPVSQKRDDIAKAIAQHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 162

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 163 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 205



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 206  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 265

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 266  HFSNAPIIEVSGRT 279



 Score = 40.8 bits (94), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 206 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 239


>gi|205356954|ref|ZP_02343633.2| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205324995|gb|EDZ12834.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 1295

 Score =  263 bits (671), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 175 AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 234

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 235 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 287

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 288 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 343

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 344 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 403

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 404 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 463

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 464 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 523

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 524 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 582

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 583 YLRVREWQDIYTQLRQVVKELGI 605



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 396 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 455

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 456 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 515

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 516 ITSALSIQ--DPRER 528



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 70  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 129

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 130 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 174



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 175  AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 234

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 235  HFNNAPIIEVSGRT 248


>gi|205357873|ref|ZP_02573915.2| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205329054|gb|EDZ15818.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
          Length = 1294

 Score =  263 bits (671), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 174 AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 233

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 234 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 286

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 287 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 342

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 343 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 402

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 403 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 462

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 463 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 522

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 523 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 581

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 582 YLRVREWQDIYTQLRQVVKELGI 604



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 395 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 454

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 455 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 514

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 515 ITSALSIQ--DPRER 527



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 69  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGSGIKGLIGHTQPRRLA 128

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 129 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 173



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 174  AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 233

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 234  HFNNAPIIEVSGRT 247


>gi|378450193|ref|YP_005237552.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|422025809|ref|ZP_16372233.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm1]
 gi|422030841|ref|ZP_16377031.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm2]
 gi|427549690|ref|ZP_18927541.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm8]
 gi|427565373|ref|ZP_18932262.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm9]
 gi|427585384|ref|ZP_18937046.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm3]
 gi|427608329|ref|ZP_18941908.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm4]
 gi|427632836|ref|ZP_18946806.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm6]
 gi|427655863|ref|ZP_18951573.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm10]
 gi|427661001|ref|ZP_18956479.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm11]
 gi|427667474|ref|ZP_18961279.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm12]
 gi|427762089|ref|ZP_18966415.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm5]
 gi|267993571|gb|ACY88456.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|414019570|gb|EKT03176.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm1]
 gi|414019879|gb|EKT03475.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm8]
 gi|414021694|gb|EKT05224.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm2]
 gi|414033726|gb|EKT16674.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm9]
 gi|414035475|gb|EKT18349.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm3]
 gi|414038470|gb|EKT21180.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm4]
 gi|414048310|gb|EKT30562.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm10]
 gi|414049934|gb|EKT32124.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm6]
 gi|414054170|gb|EKT36125.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm11]
 gi|414060120|gb|EKT41645.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm12]
 gi|414065624|gb|EKT46337.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. STm5]
          Length = 1281

 Score =  263 bits (671), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 510 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGSGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 160



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|157786634|ref|NP_001099272.1| DEAH (Asp-Glu-Ala-His) box polypeptide 33 [Rattus norvegicus]
 gi|149053252|gb|EDM05069.1| DEAH (Asp-Glu-Ala-His) box polypeptide 33 (predicted) [Rattus
           norvegicus]
          Length = 698

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 257/443 (58%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 169 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVD 228

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 229 LFSQYFNG-APVLYLEGRQHPIQIFY--------TKQPQQD---YLHAALVSVFQIHQEA 276

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 277 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPSMLVLPLYASLPYSQQLRVFQGA 334

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 335 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 394

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 395 GRAGREDSGICYRLYTEDEFDKFEKMAAPEIQRCNLASVMLQLLAMKVPNVLTFDFMSRP 454

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++IE+++  L   GA++ K+    +T +GR ++  P++    K ++  S FH  + +L
Sbjct: 455 SPDHIEAAIAQLDLLGALEHKDDQLALTPIGRKMAAFPLEPKFAKTILLSSKFHCTEEIL 514

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + ++ RK+  S+ GD +T+LN Y+ +  +  +    K WC
Sbjct: 515 TIVSLLSVDSVLYNPPARRDEVQSVRKKFISSEGDHITLLNIYRTFKNIGGN----KDWC 570

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    V ++R+Q + +
Sbjct: 571 KENFVNSKNMLLVAEVRAQLRDI 593



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ + + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 62  RRSLPIFRARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 121

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RFE    E T+I F+T+G+LLR+
Sbjct: 122 AAISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLRE 169



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 70/118 (59%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 399 REDSGICYRLYTEDEFDKFEKMAAPEIQRCNLASVMLQLLAMKVPNVLTFDFMSRPSPDH 458

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           IE+++  L   GA++ K+    +T +GR ++  P++    K ++  S FH  + +L +
Sbjct: 459 IEAAIAQLDLLGALEHKDDQLALTPIGRKMAAFPLEPKFAKTILLSSKFHCTEEILTI 516



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 12/113 (10%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      +E+  E G+      R E + + +   +   D   ++ A +D+ L  Y  +
Sbjct: 123  AISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLREAISDSLLRKYSCV 182

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHTYFN 1176
            +LDE HER +H D L GV+K       E     +K+I+MSAT++++LF  YFN
Sbjct: 183  ILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVDLFSQYFN 235


>gi|422922693|ref|ZP_16955872.1| ATP-dependent helicase HrpA [Vibrio cholerae BJG-01]
 gi|341645181|gb|EGS69331.1| ATP-dependent helicase HrpA [Vibrio cholerae BJG-01]
          Length = 1309

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDQKKRLTESGKQLARLPIDPRLARMVLEASKIGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDQKKRLTESGKQLARLPIDPRLARMVLEASKIGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|301117172|ref|XP_002906314.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262107663|gb|EEY65715.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 910

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 152/440 (34%), Positives = 251/440 (57%), Gaps = 17/440 (3%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIA-K 375
           L  Y V+VLDE HER L  D L G++K  +    ++K+++MSAT+++ LF  +F      
Sbjct: 382 LERYSVVVLDEAHERTLQTDILFGIVKRAMRKRKDLKVVVMSATLDVALFKRFFQDFKPA 441

Query: 376 IIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI-IDKKYPRTERGDVLIFMSG 434
           +I++PGR++ + + Y       +T+ + LD    + +L I +++K   T  G +L+F++G
Sbjct: 442 VIQIPGRMFQVDVFYTA-----KTQPDYLDSA-LVAVLQIHLEEK---TSNGSILVFLTG 492

Query: 435 ISEISSIVRAAQEYNEK----SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490
             +I ++    +EY       +   +V P+ + +  E+Q +VF  AP G+RK I++TNIA
Sbjct: 493 QEDIETLETLLEEYARSLPADALKLMVCPIFAAMPREQQMKVFEPAPAGVRKVILATNIA 552

Query: 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRL 550
           ETSITI+G+R+VVD+G VK+ S+  ++ M  LQ   +SKA A QR GRAGR  PG+CYRL
Sbjct: 553 ETSITINGVRYVVDTGLVKQRSFVASSGMEMLQTESVSKAQAWQRTGRAGREAPGICYRL 612

Query: 551 YSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQ 610
           + EE +  L E + P+I+RVS++ ++L L  MG+ D   F F+E P   ++  ++  L  
Sbjct: 613 FPEETFEQLPERAIPDIQRVSLEVVVLQLKIMGIDDALAFDFIEKPLKTSLVKALEKLYA 672

Query: 611 HGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAF 670
            GA+D+K ++T+LGR ++ LPV+     ML+  +     +  LS+ A+LSV+S F +   
Sbjct: 673 LGALDNKGKLTTLGRQMAGLPVEPMYAVMLLKATELGCAEEALSVVAMLSVESIFYSPRD 732

Query: 671 RDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLR 730
           +  +   +R    +  GD +T+LN +  ++       +  KWC+   I  +    V  +R
Sbjct: 733 KKAEAAQSRARFVAYEGDQITLLNVFNGYIQCGSK--QRNKWCRDHYINHRAMTRVESVR 790

Query: 731 SQFKQVLGDSGLITDIPGPD 750
            Q K  L    L  D   PD
Sbjct: 791 LQLKGYLEKLELPIDTSFPD 810



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 76/113 (67%), Gaps = 3/113 (2%)

Query: 30  KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQ 87
           +++ T+  LP+  ++ +II+ V   +VVI+ G+TG GK+TQIPQY+ ++     R+A TQ
Sbjct: 263 ELQRTRQRLPIYAHRSKIIEAVNDNQVVILVGETGSGKTTQIPQYIWESDRAHARVAITQ 322

Query: 88  PRRIACISLSKRVAYE-TLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           PRR+A I++++RV  E       + VGY +RF+    + T++ F+T+G+L+R+
Sbjct: 323 PRRVAAITVAQRVCEEANRGPLGDSVGYCVRFDDTTSKNTRLKFMTDGMLVRE 375



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 64/101 (63%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R  PG+CYRL+ EE +  L E + P+I+RVS++ ++L L  MG+ D   F F+E P   +
Sbjct: 603 REAPGICYRLFPEETFEQLPERAIPDIQRVSLEVVVLQLKIMGIDDALAFDFIEKPLKTS 662

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
           +  ++  L   GA+D+K ++TTLGR ++ LPV+     ML+
Sbjct: 663 LVKALEKLYALGALDNKGKLTTLGRQMAGLPVEPMYAVMLL 703



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            L  Y V+VLDE HER L  D L G++K  +    ++K+++MSAT+++ LF  +F 
Sbjct: 382  LERYSVVVLDEAHERTLQTDILFGIVKRAMRKRKDLKVVVMSATLDVALFKRFFQ 436


>gi|296202340|ref|XP_002748349.1| PREDICTED: putative ATP-dependent RNA helicase DHX33 isoform 1
           [Callithrix jacchus]
          Length = 707

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 255/443 (57%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 178 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGRLPLKVIVMSATMDVD 237

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 238 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 285

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 286 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDSCPAMLVLPLYASLPYAQQLRVFQGA 343

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 344 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 403

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 404 GRAGREDSGICYRLYTEEEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 463

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 464 SPDHIQAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPKFAKTILLSPKFHCTEEIL 523

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + +  RK+  S+ GD  T+LN Y+ +  +  +    K WC
Sbjct: 524 TIVSLLSVDSILHNPPSRRDEVQGVRKKFTSSEGDHFTLLNIYRTFKNIGGN----KDWC 579

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    VT++R+Q + +
Sbjct: 580 KENFVNSKNMMLVTEVRAQLRDI 602



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 71  RRSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 130

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RF+    E T+I F+T+G+LLR+
Sbjct: 131 AAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLRE 178



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 73/127 (57%), Gaps = 3/127 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 408 REDSGICYRLYTEEEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 467

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +  
Sbjct: 468 IQAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPKFAKTILLSPKFHCTEEILTIVS 527

Query: 926 ALNFGAI 932
            L+  +I
Sbjct: 528 LLSVDSI 534



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 181  SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGRLPLKVIVMSATMDVDLFS 240

Query: 1173 TYFN 1176
             YFN
Sbjct: 241  QYFN 244


>gi|424810195|ref|ZP_18235558.1| ATP-dependent helicase HrpA [Vibrio mimicus SX-4]
 gi|342322566|gb|EGU18355.1| ATP-dependent helicase HrpA [Vibrio mimicus SX-4]
          Length = 1309

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 258/451 (57%), Gaps = 23/451 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSE--KLDPGPYIRILSIIDKKYPRTERG 426
           +F+  A II+V GR YP+++ Y P+   D ++S+  +L+ G +  +  + D+       G
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDHDQLE-GIFQAVDELCDEGL-----G 302

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++
Sbjct: 303 DILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLA 358

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GRT  G+
Sbjct: 359 TNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIESVSQASANQRKGRCGRTEEGI 418

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR
Sbjct: 419 CIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVR 478

Query: 607 SLTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+
Sbjct: 479 LLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSI 538

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGI 718
           Q P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   +
Sbjct: 539 QDPRERPSDKQQASDEKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYL 597

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
              R  E   + +Q  Q   + G  + D PG
Sbjct: 598 NYLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAKAIAQHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|161582005|ref|NP_231026.2| ATP-dependent RNA helicase HrpA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|417813399|ref|ZP_12460056.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-49A2]
 gi|417816263|ref|ZP_12462895.1| ATP-dependent helicase HrpA [Vibrio cholerae HCUF01]
 gi|418332410|ref|ZP_12943344.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-06A1]
 gi|418337154|ref|ZP_12946052.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-23A1]
 gi|418343669|ref|ZP_12950453.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-28A1]
 gi|418348822|ref|ZP_12953556.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-43A1]
 gi|418355238|ref|ZP_12957959.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-61A1]
 gi|419825865|ref|ZP_14349369.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1033(6)]
 gi|421316454|ref|ZP_15767025.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1032(5)]
 gi|421320988|ref|ZP_15771545.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1038(11)]
 gi|421324984|ref|ZP_15775510.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1041(14)]
 gi|421328643|ref|ZP_15779157.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1042(15)]
 gi|421331667|ref|ZP_15782147.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1046(19)]
 gi|421335238|ref|ZP_15785705.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1048(21)]
 gi|421339132|ref|ZP_15789567.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-20A2]
 gi|421347129|ref|ZP_15797511.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-46A1]
 gi|422891488|ref|ZP_16933866.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-40A1]
 gi|422902700|ref|ZP_16937696.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-48A1]
 gi|422906577|ref|ZP_16941407.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-70A1]
 gi|422913161|ref|ZP_16947680.1| ATP-dependent helicase HrpA [Vibrio cholerae HFU-02]
 gi|422925641|ref|ZP_16958666.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-38A1]
 gi|423144963|ref|ZP_17132572.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-19A1]
 gi|423149642|ref|ZP_17136970.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-21A1]
 gi|423153455|ref|ZP_17140649.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-22A1]
 gi|423156269|ref|ZP_17143373.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-32A1]
 gi|423160094|ref|ZP_17147062.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-33A2]
 gi|423164816|ref|ZP_17151571.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-48B2]
 gi|423730947|ref|ZP_17704261.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-17A1]
 gi|423755851|ref|ZP_17712272.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-50A2]
 gi|423892635|ref|ZP_17726318.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-62A1]
 gi|423927412|ref|ZP_17730934.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-77A1]
 gi|424001961|ref|ZP_17745047.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-17A2]
 gi|424006119|ref|ZP_17749099.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-37A1]
 gi|424024137|ref|ZP_17763797.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-62B1]
 gi|424026986|ref|ZP_17766599.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-69A1]
 gi|424586260|ref|ZP_18025849.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1030(3)]
 gi|424594961|ref|ZP_18034294.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1040(13)]
 gi|424598827|ref|ZP_18038020.1| ATP-dependent helicase HrpA [Vibrio Cholerae CP1044(17)]
 gi|424601564|ref|ZP_18040716.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1047(20)]
 gi|424606557|ref|ZP_18045517.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1050(23)]
 gi|424610387|ref|ZP_18049241.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-39A1]
 gi|424613192|ref|ZP_18051995.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-41A1]
 gi|424617008|ref|ZP_18055695.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-42A1]
 gi|424621959|ref|ZP_18060482.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-47A1]
 gi|424644933|ref|ZP_18082681.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-56A2]
 gi|424652612|ref|ZP_18090088.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-57A2]
 gi|424656516|ref|ZP_18093814.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-81A2]
 gi|443503469|ref|ZP_21070448.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-64A1]
 gi|443507370|ref|ZP_21074154.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-65A1]
 gi|443511497|ref|ZP_21078152.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-67A1]
 gi|443515052|ref|ZP_21081579.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-68A1]
 gi|443518850|ref|ZP_21085260.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-71A1]
 gi|443523740|ref|ZP_21089967.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-72A2]
 gi|443531351|ref|ZP_21097366.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-7A1]
 gi|443535126|ref|ZP_21101019.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-80A1]
 gi|443538694|ref|ZP_21104549.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-81A1]
 gi|340041989|gb|EGR02955.1| ATP-dependent helicase HrpA [Vibrio cholerae HCUF01]
 gi|340042703|gb|EGR03668.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-49A2]
 gi|341623313|gb|EGS48855.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-48A1]
 gi|341623475|gb|EGS49008.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-70A1]
 gi|341624536|gb|EGS50028.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-40A1]
 gi|341639598|gb|EGS64215.1| ATP-dependent helicase HrpA [Vibrio cholerae HFU-02]
 gi|341647223|gb|EGS71309.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-38A1]
 gi|356419221|gb|EHH72779.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-06A1]
 gi|356419658|gb|EHH73203.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-21A1]
 gi|356424706|gb|EHH78105.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-19A1]
 gi|356431671|gb|EHH84875.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-22A1]
 gi|356432732|gb|EHH85929.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-23A1]
 gi|356436083|gb|EHH89210.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-28A1]
 gi|356441943|gb|EHH94819.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-32A1]
 gi|356447561|gb|EHI00352.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-43A1]
 gi|356448550|gb|EHI01314.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-33A2]
 gi|356453640|gb|EHI06303.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-61A1]
 gi|356454341|gb|EHI06989.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-48B2]
 gi|395920654|gb|EJH31476.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1041(14)]
 gi|395921411|gb|EJH32231.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1032(5)]
 gi|395923970|gb|EJH34781.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1038(11)]
 gi|395930149|gb|EJH40898.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1042(15)]
 gi|395932931|gb|EJH43674.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1046(19)]
 gi|395937099|gb|EJH47822.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1048(21)]
 gi|395944080|gb|EJH54754.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-20A2]
 gi|395946189|gb|EJH56853.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-46A1]
 gi|395960305|gb|EJH70680.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-56A2]
 gi|395961543|gb|EJH71866.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-57A2]
 gi|395964719|gb|EJH74918.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-42A1]
 gi|395972143|gb|EJH81754.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-47A1]
 gi|395975654|gb|EJH85138.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1030(3)]
 gi|395977340|gb|EJH86751.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1047(20)]
 gi|408008254|gb|EKG46258.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-39A1]
 gi|408014568|gb|EKG52202.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-41A1]
 gi|408034211|gb|EKG70717.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1040(13)]
 gi|408043430|gb|EKG79426.1| ATP-dependent helicase HrpA [Vibrio Cholerae CP1044(17)]
 gi|408044760|gb|EKG80652.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1050(23)]
 gi|408055404|gb|EKG90336.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-81A2]
 gi|408609946|gb|EKK83322.1| ATP-dependent helicase HrpA [Vibrio cholerae CP1033(6)]
 gi|408625335|gb|EKK98248.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-17A1]
 gi|408638182|gb|EKL10130.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-50A2]
 gi|408656271|gb|EKL27368.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-77A1]
 gi|408657547|gb|EKL28626.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-62A1]
 gi|408846868|gb|EKL86947.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-37A1]
 gi|408848044|gb|EKL88099.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-17A2]
 gi|408871551|gb|EKM10788.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-62B1]
 gi|408879877|gb|EKM18820.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-69A1]
 gi|443432201|gb|ELS74732.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-64A1]
 gi|443436403|gb|ELS82526.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-65A1]
 gi|443439672|gb|ELS89370.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-67A1]
 gi|443443694|gb|ELS96980.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-68A1]
 gi|443447899|gb|ELT04541.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-71A1]
 gi|443450291|gb|ELT10568.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-72A2]
 gi|443458434|gb|ELT25830.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-7A1]
 gi|443461741|gb|ELT32799.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-80A1]
 gi|443466283|gb|ELT40942.1| ATP-dependent helicase HrpA [Vibrio cholerae HC-81A1]
          Length = 1280

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 221 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 274

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 275 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 330

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 331 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 390

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 391 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 450

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 451 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 510

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S   ++ CK   + 
Sbjct: 511 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 569

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 570 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 599



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 383 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 442

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 443 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 502

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 503 IASALSIQ--DPRER 515



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 58  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 221  HFSNAPIIEVSGRT 234



 Score = 40.8 bits (94), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 161 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 194


>gi|94501060|ref|ZP_01307584.1| ATP-dependent helicase HrpA [Oceanobacter sp. RED65]
 gi|94426807|gb|EAT11791.1| ATP-dependent helicase HrpA [Oceanobacter sp. RED65]
          Length = 1298

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 151/433 (34%), Positives = 246/433 (56%), Gaps = 14/433 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D FL+ Y V+++DE HER L+ DFLLG +K LL    ++K+++ SATI+++ F  
Sbjct: 176 AETQNDRFLNQYQVIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVVITSATIDLQRFSE 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDK----KYPRTE 424
           +F+  A +I+V GR YP+++ Y PIV++D    ++ D   Y  I+  +D+       R +
Sbjct: 236 HFDN-APVIEVSGRTYPVEVRYRPIVDVDTDDEQEGDM--YQGIIDAVDELEREDAKRGQ 292

Query: 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            GDVL+F+SG  EI     A ++ N K     +LPL++ L+  EQ R+F     G R+ +
Sbjct: 293 IGDVLVFLSGEREIREASLALKKANLKQTE--ILPLYARLNSSEQQRIFK-PTGGKRRIV 349

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           +STN+AETS+T+ GIR+VVD+G  +   Y   +K+  L    IS+ASA QRKGR GR   
Sbjct: 350 LSTNVAETSLTVPGIRYVVDTGVARVSRYSYRSKVQRLPIEPISQASANQRKGRCGRVSE 409

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G+C RLYSEE +    E+S PEI+R ++ +++L ++ + LGDV  FPF++AP    I+  
Sbjct: 410 GICIRLYSEEDFLSRPEFSDPEIQRTNLAAVILQMLSLRLGDVNAFPFVDAPDNRFIKDG 469

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
              L +  A+D K  +T +GR LS  PVD  + ++L+  +  H +   L +A+ LS+Q P
Sbjct: 470 YNLLKELSAVDKKNNITRIGRQLSRFPVDPRIARVLIEANAKHALAEALIIASALSIQDP 529

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIEEQ 721
                 +    +    E   +  D +T++N +  W   ++  + +   ++ CK+  +   
Sbjct: 530 RERPVEKQQQADQKHAEFRDDESDFITLINIWN-WYEEQRQALSNNQLRQICKKHFLNYM 588

Query: 722 RFYEVTKLRSQFK 734
           R  E   +  Q +
Sbjct: 589 RMREWRDVHYQLR 601



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 2/129 (1%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE +    E+S PEI+R ++ +++L ++ + LGDV  FPF++AP    
Sbjct: 406 RVSEGICIRLYSEEDFLSRPEFSDPEIQRTNLAAVILQMLSLRLGDVNAFPFVDAPDNRF 465

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           I+     L +  A+D K  +T +GR LS  PVD  + ++L+  +  H +   L++  AL+
Sbjct: 466 IKDGYNLLKELSAVDKKNNITRIGRQLSRFPVDPRIARVLIEANAKHALAEALIIASALS 525

Query: 929 FGAIDSKER 937
               D +ER
Sbjct: 526 IQ--DPRER 532



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 3/108 (2%)

Query: 33  ETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPR 89
           E  + LP+ Q KQEI +T+   +VV+IAG+TG GK+TQ+P+  ++ G   + +IA TQPR
Sbjct: 68  EFDDQLPINQKKQEIAETIANNQVVVIAGETGSGKTTQLPKICMELGLAKYGKIAHTQPR 127

Query: 90  RIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           R+A  S++ R+A E        VGYQ+RF    ++ + +  +T+G+LL
Sbjct: 128 RLAARSVADRIAQECNVPLGEQVGYQVRFTDQSKDSSLLKLMTDGILL 175



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 46/69 (66%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D FL+ Y V+++DE HER L+ DFLLG +K LL    ++K+++ SATI+++ F  +F+  
Sbjct: 181  DRFLNQYQVIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVVITSATIDLQRFSEHFDNA 240

Query: 1179 AKDLLSGST 1187
                +SG T
Sbjct: 241  PVIEVSGRT 249


>gi|374980644|ref|ZP_09721974.1| ATP-dependent helicase hrpA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|378984202|ref|YP_005247357.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|409994417|ref|NP_460600.3| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|418866823|ref|ZP_13421284.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 4176]
 gi|16420167|gb|AAL20559.1| ATP-dependent helicase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|312912630|dbj|BAJ36604.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224264|gb|EFX49327.1| ATP-dependent helicase hrpA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|392839935|gb|EJA95473.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 4176]
          Length = 1300

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|448532241|ref|XP_003870385.1| Prp22 RNA-dependent ATPase [Candida orthopsilosis Co 90-125]
 gi|380354740|emb|CCG24255.1| Prp22 RNA-dependent ATPase [Candida orthopsilosis]
          Length = 978

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 158/446 (35%), Positives = 240/446 (53%), Gaps = 20/446 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  +S Y V++LDE HER +  D L  ++K    +   +KII+ SAT++ + F  +
Sbjct: 428 EALTDPEMSKYAVIMLDEAHERTIATDVLFALLKKAALTNPNLKIIVTSATLDSDKFSVF 487

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           FN    I+ +PGR YP+++ Y    E+D   S  LD    I I             GD+L
Sbjct: 488 FNECP-ILNIPGRTYPVEVLYTKEPEMDYL-SAALDTVMQIHI---------SEPSGDIL 536

Query: 430 IFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F++G  EI +      E      + +   I+LP++S L  E Q ++F   P G RK I+
Sbjct: 537 VFLTGQEEIDTSCEVLAERVKVLGDVASELIILPVYSALPAEMQTKIFEPTPPGSRKVIL 596

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETSITIDGI +VVD G VK  +YD  + M TL+   ISKA A QR GRAGRTGPG
Sbjct: 597 ATNIAETSITIDGIYYVVDPGYVKLNAYDSKSGMDTLKISPISKAQANQRSGRAGRTGPG 656

Query: 546 VCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            CYRLY+E+ Y+  +   + PEI+R ++   +L L  +G+ DV +F F++ P   ++ +S
Sbjct: 657 KCYRLYTEQSYTNEMLPNTIPEIQRQNLSHTILMLKAIGIKDVIQFEFMDPPSKNSMMTS 716

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           +  L    A+D    +T LGR ++D P++  L K L+     +  + +L++ A+LSVQ+ 
Sbjct: 717 LEDLYMLEALDDDGELTPLGRKMADFPMEPALAKTLIKSVDLNCTEEILTIVAMLSVQTI 776

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F     R    +  +    S  GD LT+LN Y  W   K +    K WC+   I+E+   
Sbjct: 777 FHRPKDRQNLADQRKARFHSTKGDHLTLLNVYNRWCASKYN----KDWCRDNFIQERSMR 832

Query: 725 EVTKLRSQFKQVLGDSGLITDIPGPD 750
              ++R Q + ++       +  GPD
Sbjct: 833 HAKEVRKQLQTIMTKHKYSVNSCGPD 858



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 7/120 (5%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF------ 80
           T   I E + SLPV   + ++I ++   + ++I G+TG GK+TQI QY+ + G       
Sbjct: 309 TKRSIEEQKKSLPVYDMRGDLIQSIRDNQFIVIVGETGSGKTTQIVQYIYEEGLNVINGE 368

Query: 81  -QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            + I CTQPRR+A  S++KRV+ E      + VGY +RF+     KTKI ++T+G+L R+
Sbjct: 369 SKIIGCTQPRRVAATSVAKRVSEEVGCDLGDEVGYNVRFDDKTTLKTKIKYMTDGMLERE 428



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 62/102 (60%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E+ Y+  +   + PEI+R ++   +L L  +G+ DV +F F++ P   
Sbjct: 652 RTGPGKCYRLYTEQSYTNEMLPNTIPEIQRQNLSHTILMLKAIGIKDVIQFEFMDPPSKN 711

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
           ++ +S+  L    A+D    +T LGR ++D P++  L K L+
Sbjct: 712 SMMTSLEDLYMLEALDDDGELTPLGRKMADFPMEPALAKTLI 753



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
             D  +S Y V++LDE HER +  D L  ++K    +   +KII+ SAT++ + F  +FN
Sbjct: 431  TDPEMSKYAVIMLDEAHERTIATDVLFALLKKAALTNPNLKIIVTSATLDSDKFSVFFN 489


>gi|153212717|ref|ZP_01948374.1| ATP-dependent helicase HrpA [Vibrio cholerae 1587]
 gi|124116367|gb|EAY35187.1| ATP-dependent helicase HrpA [Vibrio cholerae 1587]
          Length = 1309

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++  + VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGDFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 184 RKMLKADNAYEIEEEEEEEEGE------RLESMDANEVEFRLKHDPKQV-QVATDNFLSS 236
           R++     A  I EE E E G+      R     +++ + +L  D   + ++  D FL+ 
Sbjct: 141 RRLAARSVANRIAEEMETELGDFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQ 200

Query: 237 YDILILDEVHERHLYGDFLLGVI 259
           YD +I+DE HER L  DF+LG +
Sbjct: 201 YDTIIIDEAHERSLNIDFILGYL 223


>gi|262165619|ref|ZP_06033356.1| ATP-dependent helicase HrpA [Vibrio mimicus VM223]
 gi|262025335|gb|EEY44003.1| ATP-dependent helicase HrpA [Vibrio mimicus VM223]
          Length = 1242

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 256/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 123 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 182

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 183 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 236

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 237 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 292

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GRT  G+C
Sbjct: 293 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRTEEGIC 352

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N++  VR 
Sbjct: 353 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNVQDGVRL 412

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+Q
Sbjct: 413 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSIQ 472

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 473 DPRERPSDKQQASDEKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 531

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 532 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 561



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 345 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 404

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           N++  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 405 NVQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 464

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 465 IASALSIQ--DPRER 477



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 20  LPVSQKRDDIAKAIAQHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 79

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 80  SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 122



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 123  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 182

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 183  HFSNAPIIEVSGRT 196



 Score = 40.8 bits (94), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 123 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 156


>gi|378445054|ref|YP_005232686.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|378699521|ref|YP_005181478.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|378988981|ref|YP_005252145.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
 gi|379700811|ref|YP_005242539.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. ST4/74]
 gi|383496339|ref|YP_005397028.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 798]
 gi|261246833|emb|CBG24648.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301158169|emb|CBW17666.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323129910|gb|ADX17340.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. ST4/74]
 gi|332988528|gb|AEF07511.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
 gi|380463160|gb|AFD58563.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 798]
          Length = 1300

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGSGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|145634228|ref|ZP_01789939.1| hypothetical protein CGSHiAA_09290 [Haemophilus influenzae PittAA]
 gi|145268672|gb|EDK08665.1| hypothetical protein CGSHiAA_09290 [Haemophilus influenzae PittAA]
          Length = 1304

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 169/495 (34%), Positives = 267/495 (53%), Gaps = 35/495 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE +       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEEN-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFAQLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLL 472

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K  +T +G  L+ LPVD  L KM++    F  +  ++ + + LS+
Sbjct: 473 EELGAFETVQTKSGEKRLLTRVGLQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYK----EWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN ++    +   + K++ R +  C++  
Sbjct: 533 QDPRERPQEKQQASDEKHRRFTDKKSDFLAFLNLWRYLQEQQKALSKNQFRRQ--CQKDF 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE
Sbjct: 591 LNYLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE 645

Query: 778 EAPKRRKMLKADNAY 792
               +++ L A NA+
Sbjct: 646 ----KQQYLGARNAH 656



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFSDQISDDTQIKLMTDGILL 185



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  V+ L + GA ++       K  +T +G  L+ LPVD  L KM++    F  +  M+
Sbjct: 465 IQDGVKLLEELGAFETVQTKSGEKRLLTRVGLQLAQLPVDPRLAKMILSAVNFGCVYEMM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|147674840|ref|YP_001216943.1| ATP-dependent RNA helicase HrpA [Vibrio cholerae O395]
 gi|227117847|ref|YP_002819743.1| ATP-dependent helicase HrpA [Vibrio cholerae O395]
 gi|146316723|gb|ABQ21262.1| ATP-dependent helicase HrpA [Vibrio cholerae O395]
 gi|227013297|gb|ACP09507.1| ATP-dependent helicase HrpA [Vibrio cholerae O395]
          Length = 1309

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLTGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S   ++ CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|297578966|ref|ZP_06940894.1| ATP-dependent helicase HrpA [Vibrio cholerae RC385]
 gi|297536560|gb|EFH75393.1| ATP-dependent helicase HrpA [Vibrio cholerae RC385]
          Length = 1309

 Score =  263 bits (671), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDQKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S   ++ CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGEQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDQKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|390989271|ref|ZP_10259570.1| ATP-dependent helicase HrpA [Xanthomonas axonopodis pv. punicae
           str. LMG 859]
 gi|372556029|emb|CCF66545.1| ATP-dependent helicase HrpA [Xanthomonas axonopodis pv. punicae
           str. LMG 859]
          Length = 1373

 Score =  263 bits (671), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 250/445 (56%), Gaps = 34/445 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LSSYD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGP--------YIRILSIIDKKY 420
           +F+  A +I V GR +P+++ Y P+ E D    ++ + G            I++ ID+  
Sbjct: 240 HFDN-APVISVEGRTFPVEVRYRPL-EGDTGDGDEGEHGSGRDGERSVNDAIVAAIDEIT 297

Query: 421 PRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QDRVF+  P 
Sbjct: 298 RIDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDRVFNPGPR 353

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
             R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR GR
Sbjct: 354 --RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMGR 411

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
            GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP  
Sbjct: 412 CGRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDE 471

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
             +    + L + GAID++ R+T+ GR ++ LPVD+ L +MLV       +  ++ +AA 
Sbjct: 472 RAVADGWQQLLELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAF 531

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDRVRSK- 710
           L +Q P      R P+   A     +   D        L + +AY++   V +D  +SK 
Sbjct: 532 LGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDLTQSKL 584

Query: 711 -KWCKRRGIEEQRFYEVTKLRSQFK 734
             WC R  +   R  E  +L  Q +
Sbjct: 585 RDWCNRHFLGFLRMREWRELHRQLR 609



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 413 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 472

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 473 AVADGWQQLLELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 530

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 531 FLGIQDPRER 540



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 48/63 (76%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LSSYD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 67/105 (63%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           + LP+A+  + II  +   +VV+IAG+TG GK+ Q+P+  + AG      I CTQPRRIA
Sbjct: 75  DQLPIAREAERIIALIRDHQVVVIAGETGSGKTNQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +     VG+Q+RF     ++++I F+T+G+LL
Sbjct: 135 ARAVAARVADELKTPLGTTVGFQVRFTDRVSDQSRIKFMTDGILL 179



 Score = 47.8 bits (112), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 28/39 (71%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++A+D +LSSYD +I+DE HER L  DFLLG +   LH
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLH 218



 Score = 43.9 bits (102), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 482  LELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAAFLGIQDPRE 539

Query: 1037 R 1037
            R
Sbjct: 540  R 540



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M+++
Sbjct: 482  LELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 528


>gi|153817752|ref|ZP_01970419.1| ATP-dependent helicase HrpA [Vibrio cholerae NCTC 8457]
 gi|153821323|ref|ZP_01973990.1| ATP-dependent helicase HrpA [Vibrio cholerae B33]
 gi|227081553|ref|YP_002810104.1| ATP-dependent RNA helicase HrpA [Vibrio cholerae M66-2]
 gi|229505039|ref|ZP_04394549.1| ATP-dependent helicase HrpA [Vibrio cholerae BX 330286]
 gi|229511291|ref|ZP_04400770.1| ATP-dependent helicase HrpA [Vibrio cholerae B33]
 gi|229518409|ref|ZP_04407853.1| ATP-dependent helicase HrpA [Vibrio cholerae RC9]
 gi|229608043|ref|YP_002878691.1| ATP-dependent RNA helicase HrpA [Vibrio cholerae MJ-1236]
 gi|254848503|ref|ZP_05237853.1| ATP-dependent helicase HrpA [Vibrio cholerae MO10]
 gi|255745767|ref|ZP_05419715.1| ATP-dependent helicase HrpA [Vibrio cholera CIRS 101]
 gi|262158954|ref|ZP_06030066.1| ATP-dependent helicase HrpA [Vibrio cholerae INDRE 91/1]
 gi|360035277|ref|YP_004937040.1| ATP-dependent RNA helicase HrpA [Vibrio cholerae O1 str.
           2010EL-1786]
 gi|440709638|ref|ZP_20890295.1| ATP-dependent helicase HrpA [Vibrio cholerae 4260B]
 gi|449056132|ref|ZP_21734800.1| ATP-dependent helicase HrpA [Vibrio cholerae O1 str. Inaba G4222]
 gi|9655877|gb|AAF94540.1| ATP-dependent helicase HrpA [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126511690|gb|EAZ74284.1| ATP-dependent helicase HrpA [Vibrio cholerae NCTC 8457]
 gi|126521141|gb|EAZ78364.1| ATP-dependent helicase HrpA [Vibrio cholerae B33]
 gi|227009441|gb|ACP05653.1| ATP-dependent helicase HrpA [Vibrio cholerae M66-2]
 gi|229345124|gb|EEO10098.1| ATP-dependent helicase HrpA [Vibrio cholerae RC9]
 gi|229351256|gb|EEO16197.1| ATP-dependent helicase HrpA [Vibrio cholerae B33]
 gi|229357262|gb|EEO22179.1| ATP-dependent helicase HrpA [Vibrio cholerae BX 330286]
 gi|229370698|gb|ACQ61121.1| ATP-dependent helicase HrpA [Vibrio cholerae MJ-1236]
 gi|254844208|gb|EET22622.1| ATP-dependent helicase HrpA [Vibrio cholerae MO10]
 gi|255736842|gb|EET92239.1| ATP-dependent helicase HrpA [Vibrio cholera CIRS 101]
 gi|262029139|gb|EEY47791.1| ATP-dependent helicase HrpA [Vibrio cholerae INDRE 91/1]
 gi|356646431|gb|AET26486.1| ATP-dependent RNA helicase HrpA [Vibrio cholerae O1 str.
           2010EL-1786]
 gi|439975227|gb|ELP51363.1| ATP-dependent helicase HrpA [Vibrio cholerae 4260B]
 gi|448263955|gb|EMB01194.1| ATP-dependent helicase HrpA [Vibrio cholerae O1 str. Inaba G4222]
          Length = 1309

 Score =  263 bits (671), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S   ++ CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|229529544|ref|ZP_04418934.1| ATP-dependent helicase HrpA [Vibrio cholerae 12129(1)]
 gi|417820801|ref|ZP_12467415.1| ATP-dependent helicase HrpA [Vibrio cholerae HE39]
 gi|423952567|ref|ZP_17734281.1| ATP-dependent helicase HrpA [Vibrio cholerae HE-40]
 gi|423982218|ref|ZP_17738063.1| ATP-dependent helicase HrpA [Vibrio cholerae HE-46]
 gi|229333318|gb|EEN98804.1| ATP-dependent helicase HrpA [Vibrio cholerae 12129(1)]
 gi|340038432|gb|EGQ99406.1| ATP-dependent helicase HrpA [Vibrio cholerae HE39]
 gi|408659989|gb|EKL31020.1| ATP-dependent helicase HrpA [Vibrio cholerae HE-40]
 gi|408665218|gb|EKL36037.1| ATP-dependent helicase HrpA [Vibrio cholerae HE-46]
          Length = 1309

 Score =  263 bits (671), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S   ++ CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|421913207|ref|ZP_16342902.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae ST258-K26BO]
 gi|421918385|ref|ZP_16347915.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae ST258-K28BO]
 gi|428152403|ref|ZP_19000074.1| ATP-dependent helicase hrpA [Klebsiella pneumoniae subsp.
           pneumoniae ST512-K30BO]
 gi|410112933|emb|CCM85527.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae ST258-K26BO]
 gi|410119377|emb|CCM90540.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae ST258-K28BO]
 gi|427537653|emb|CCM96212.1| ATP-dependent helicase hrpA [Klebsiella pneumoniae subsp.
           pneumoniae ST512-K30BO]
          Length = 1300

 Score =  263 bits (671), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|58581348|ref|YP_200364.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
           10331]
 gi|84623281|ref|YP_450653.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58425942|gb|AAW74979.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
           10331]
 gi|84367221|dbj|BAE68379.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 1373

 Score =  262 bits (670), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 246/441 (55%), Gaps = 26/441 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR-----------ILSIID 417
           +F+  A +I V GR +P+++ Y P+ E D   S   D G +             I++ ID
Sbjct: 240 HFDN-APVINVEGRTFPVEVRYRPL-EGDTGDS---DDGEHSSGRDGERSVNDAIVAAID 294

Query: 418 KKYPRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHY 475
           +      RGDVL+F+ G  EI    +A   ++Y E      V+PL++ LS  +QDRVF+ 
Sbjct: 295 EITRIDPRGDVLMFLPGEREIRDAHQALERRKYRETE----VVPLYARLSAADQDRVFNP 350

Query: 476 APEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQR 535
            P   R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR
Sbjct: 351 GPR--RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQR 408

Query: 536 KGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEA 595
            GR GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEA
Sbjct: 409 MGRCGRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEA 468

Query: 596 PPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           P    +    + L + GAID++ R+T+ GR ++ LPVD+ L +MLV       +  ++ +
Sbjct: 469 PDERAVADGWQQLLELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 528

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWC 713
           AA L +Q P    A      + A         + + +L  +  +  V +D  +SK   WC
Sbjct: 529 AAFLGIQDPRERPAEAREAADNAHALFADVRSEFVGILRLWDAYRQVHEDLTQSKLRDWC 588

Query: 714 KRRGIEEQRFYEVTKLRSQFK 734
            R  +   R  E  +L  Q +
Sbjct: 589 NRHFLGFLRMREWRELHRQLR 609



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 413 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 472

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 473 AVADGWQQLLELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 530

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 531 FLGIQDPRER 540



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           N LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  NQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +    +VG+Q+RF     E+++I F+T+G+LL
Sbjct: 135 ARAVAARVAEELKTPLGTIVGFQVRFTDRVSEQSRIKFMTDGILL 179



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 48/63 (76%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 46.6 bits (109), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++A+D +LS+YD +I+DE HER L  DFLLG +   LH
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLH 218



 Score = 44.3 bits (103), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 482  LELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAAFLGIQDPRE 539

Query: 1037 R 1037
            R
Sbjct: 540  R 540



 Score = 41.6 bits (96), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M+++
Sbjct: 482  LELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 528


>gi|431893943|gb|ELK03749.1| Putative ATP-dependent RNA helicase DHX33 [Pteropus alecto]
          Length = 683

 Score =  262 bits (670), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 255/443 (57%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E   D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 176 EAILDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 235

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 236 LFSQYFNG-APVLYLEGRQHPIQIFY--------TKQPQHD---YLHAALVSVFQIHQEA 283

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   + S   +VLPL+++L   +Q RVF  A
Sbjct: 284 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGSPSMLVLPLYASLPYAQQLRVFQGA 341

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 342 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPVSGLEVLAVQRVSKTQAWQRT 401

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 402 GRAGREDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVMLHLLAMKVPNVLTFDFMSKP 461

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             +++E+++  L   GA++ K+    +T LGR ++  P++    K ++    FH  + +L
Sbjct: 462 SPDHVEAAIAQLDLLGALEHKDDQLPLTPLGRKMAAFPLEPKFAKTILLSPKFHCTEEIL 521

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  +  +    K WC
Sbjct: 522 TIVSLLSVDSVLYNPPSRRDEVQGVRKKFTSSEGDHITLLNIYRTFKNIGGN----KDWC 577

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    V ++R+Q + +
Sbjct: 578 KENFVNSKNMMLVAEVRAQLRDI 600



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 73/115 (63%), Gaps = 3/115 (2%)

Query: 28  LMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IA 84
           L  +   + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA
Sbjct: 62  LEAVERQRRSLPIFQARAQLLTQLRNLDSAVLIGETGSGKTTQIPQYLYEVGISRQGIIA 121

Query: 85  CTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            TQPRR+A ISL+ RV+ E  ++   LVGY +RF+    E T+I F+T+G+LLR+
Sbjct: 122 VTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLRE 176



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 406 REDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVMLHLLAMKVPNVLTFDFMSKPSPDH 465

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           +E+++  L   GA++ K+    +T LGR ++  P++    K ++    FH  + +L +
Sbjct: 466 VEAAIAQLDLLGALEHKDDQLPLTPLGRKMAAFPLEPKFAKTILLSPKFHCTEEILTI 523



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 5/63 (7%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHT 1173
            D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF  
Sbjct: 180  DSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFSQ 239

Query: 1174 YFN 1176
            YFN
Sbjct: 240  YFN 242


>gi|229515752|ref|ZP_04405211.1| ATP-dependent helicase HrpA [Vibrio cholerae TMA 21]
 gi|229347521|gb|EEO12481.1| ATP-dependent helicase HrpA [Vibrio cholerae TMA 21]
          Length = 1309

 Score =  262 bits (670), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S   ++ CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAKAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|153828765|ref|ZP_01981432.1| ATP-dependent helicase HrpA [Vibrio cholerae 623-39]
 gi|148875718|gb|EDL73853.1| ATP-dependent helicase HrpA [Vibrio cholerae 623-39]
          Length = 1309

 Score =  262 bits (670), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S   ++ CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++  + VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGSFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 41.2 bits (95), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 184 RKMLKADNAYEIEEEEEEEEGE------RLESMDANEVEFRLKHDPKQV-QVATDNFLSS 236
           R++     A  I EE E E G       R     +++ + +L  D   + ++  D FL+ 
Sbjct: 141 RRLAARSVANRIAEEMETELGSFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQ 200

Query: 237 YDILILDEVHERHLYGDFLLGVI 259
           YD +I+DE HER L  DF+LG +
Sbjct: 201 YDTIIIDEAHERSLNIDFILGYL 223


>gi|390463396|ref|XP_003733027.1| PREDICTED: putative ATP-dependent RNA helicase DHX33 isoform 2
           [Callithrix jacchus]
          Length = 534

 Score =  262 bits (670), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 255/443 (57%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 5   EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGRLPLKVIVMSATMDVD 64

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 65  LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 112

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 113 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDSCPAMLVLPLYASLPYAQQLRVFQGA 170

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 171 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 230

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 231 GRAGREDSGICYRLYTEEEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 290

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 291 SPDHIQAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPKFAKTILLSPKFHCTEEIL 350

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + +  RK+  S+ GD  T+LN Y+ +  +  +    K WC
Sbjct: 351 TIVSLLSVDSILHNPPSRRDEVQGVRKKFTSSEGDHFTLLNIYRTFKNIGGN----KDWC 406

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    VT++R+Q + +
Sbjct: 407 KENFVNSKNMMLVTEVRAQLRDI 429



 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 73/127 (57%), Gaps = 3/127 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 235 REDSGICYRLYTEEEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 294

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +  
Sbjct: 295 IQAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPKFAKTILLSPKFHCTEEILTIVS 354

Query: 926 ALNFGAI 932
            L+  +I
Sbjct: 355 LLSVDSI 361



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 8    SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGRLPLKVIVMSATMDVDLFS 67

Query: 1173 TYFN 1176
             YFN
Sbjct: 68   QYFN 71


>gi|419729674|ref|ZP_14256631.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41579]
 gi|419732387|ref|ZP_14259293.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41563]
 gi|419740220|ref|ZP_14266954.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41573]
 gi|419744581|ref|ZP_14271235.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41566]
 gi|419747909|ref|ZP_14274410.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41565]
 gi|421572319|ref|ZP_16017969.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00322]
 gi|421574011|ref|ZP_16019639.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00325]
 gi|421581600|ref|ZP_16027143.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00326]
 gi|421586807|ref|ZP_16032288.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00328]
 gi|381296267|gb|EIC37374.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41573]
 gi|381296632|gb|EIC37736.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41579]
 gi|381303236|gb|EIC44265.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41563]
 gi|381308274|gb|EIC49118.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41566]
 gi|381315760|gb|EIC56516.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. 41565]
 gi|402517227|gb|EJW24631.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00326]
 gi|402517434|gb|EJW24834.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00322]
 gi|402526254|gb|EJW33531.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00325]
 gi|402528206|gb|EJW35464.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. CFSAN00328]
          Length = 1281

 Score =  262 bits (670), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTAEALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 510 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|302781811|ref|XP_002972679.1| hypothetical protein SELMODRAFT_98495 [Selaginella moellendorffii]
 gi|300159280|gb|EFJ25900.1| hypothetical protein SELMODRAFT_98495 [Selaginella moellendorffii]
          Length = 850

 Score =  262 bits (670), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 248/453 (54%), Gaps = 24/453 (5%)

Query: 314 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
           D  L     +++DEIHER ++ DFLL V++ LL    ++++ILMSATIN ++F  YF   
Sbjct: 228 DPLLEGVSHVIVDEIHERGMNEDFLLVVLRDLLPKRPKLRLILMSATINADMFSKYFGNA 287

Query: 374 AKIIKVPGRLYPIQ-------LEYHPIVELDRTKSEKLDPGPYIR-----------ILSI 415
            K+  +PG  +P++       +E       +   S +   G  I            + + 
Sbjct: 288 PKL-HIPGFTFPVREFFLEDVVESTGFQSQNNQASSRFSGGRRIEKQKDSLTELFEVEAA 346

Query: 416 IDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHY 475
           I       + G +L+F++G  +IS ++   +  N   +  ++LPLH ++    Q ++F  
Sbjct: 347 IQHICEEKDDGAILVFLTGWDDISKLLDKLK-LNPSVRNELLLPLHGSMPTINQRQIFQR 405

Query: 476 APEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQR 535
            P G+RK +++TNIAETSITID + +V+D GK KE SYD   K++ L   WIS+A+A QR
Sbjct: 406 PPPGVRKIVLATNIAETSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISRAAAHQR 465

Query: 536 KGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFL 593
           +GRAGR  PG+C+ LY +  Y  +A+Y  PEI R  ++SL L +  + +G + KF    L
Sbjct: 466 RGRAGRVQPGICFHLYPKLMYDAMAQYQLPEILRTPLESLCLQIKSLQVGSIAKFLSKAL 525

Query: 594 EAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
           E P    +++++ SL   GA+D +E +TSLGR L+ LP+D  +GKML+ G++F  +D  L
Sbjct: 526 EPPELRAVDNAIESLKTIGALDDREELTSLGRHLTTLPLDPKVGKMLLMGAIFQCLDPAL 585

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESN-HGDPLTVLNAYKEWLGVKKDRVRSKKW 712
           ++AA L+ + PF     +    + A++ L  N   D L ++ AY+ ++ V K   R + +
Sbjct: 586 TIAAALAHRDPFVIPIDKRDAADEAKRRLAGNARSDHLALMRAYEGYI-VAKRHGRERNY 644

Query: 713 CKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITD 745
           C    +  Q    +   R QF   L   G + +
Sbjct: 645 CWENFLSAQTLQWMDGAREQFYDHLSKIGFVDN 677



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 13/129 (10%)

Query: 24  KFSTLM------KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL-- 75
           KFS+L        +   +  LP  + K EI+  V + +V++++G+TGCGK+TQ+PQ++  
Sbjct: 96  KFSSLQAGPAAKSMTSFRKKLPAFKMKDEILQAVSQNQVLVVSGETGCGKTTQLPQFILE 155

Query: 76  --VQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVF 130
             + AG      I CTQPRRI+ IS++ RVA E   +    VGYQIR E  R ++T+++F
Sbjct: 156 EEINAGRGAACDIICTQPRRISAISVATRVADERGDELGESVGYQIRLEARRSQETRLLF 215

Query: 131 ITEGLLLRQ 139
            T G+LLR+
Sbjct: 216 CTTGVLLRR 224



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 74/121 (61%), Gaps = 2/121 (1%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPA 866
           R  PG+C+ LY +  Y  +A+Y  PEI R  ++SL L +  + +G + KF    LE P  
Sbjct: 471 RVQPGICFHLYPKLMYDAMAQYQLPEILRTPLESLCLQIKSLQVGSIAKFLSKALEPPEL 530

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
             +++++ SL   GA+D +E +T+LGR L+ LP+D  +GKML+ G++F  +D  L +  A
Sbjct: 531 RAVDNAIESLKTIGALDDREELTSLGRHLTTLPLDPKVGKMLLMGAIFQCLDPALTIAAA 590

Query: 927 L 927
           L
Sbjct: 591 L 591



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 94/231 (40%), Gaps = 53/231 (22%)

Query: 1028 NFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN-----FVHH 1082
              GA+D +E +TSLGR L+ LP+D  +GKML+ G++F  +D  L +  AL       +  
Sbjct: 542  TIGALDDREELTSLGRHLTTLPLDPKVGKMLLMGAIFQCLDPALTIAAALAHRDPFVIPI 601

Query: 1083 SEEEEEEEAGERLES---------MDANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEI 1133
             + +  +EA  RL           M A E     K   ++     +NFLS+  +  +D  
Sbjct: 602  DKRDAADEAKRRLAGNARSDHLALMRAYEGYIVAKRHGRERNYCWENFLSAQTLQWMDGA 661

Query: 1134 HER---HLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARS 1190
             E+   HL                   KI  +  + N   +  Y N+ + DL        
Sbjct: 662  REQFYDHLS------------------KIGFVDNSSNSANYAAY-NKHSDDL-------- 694

Query: 1191 HKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSV 1241
                 +++ +L +GLYP V            +   F  KD G V  HP SV
Sbjct: 695  ----EMVRAVLCAGLYPNVV-----QCKARGRRTAFFTKDDGKVEPHPASV 736



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  L     +++DEIHER ++ DFLL V++ LL    ++++ILMSATIN ++F  YF   
Sbjct: 228  DPLLEGVSHVIVDEIHERGMNEDFLLVVLRDLLPKRPKLRLILMSATINADMFSKYFGNA 287

Query: 1179 AKDLLSGST 1187
             K  + G T
Sbjct: 288  PKLHIPGFT 296


>gi|194450723|ref|YP_002045681.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205359007|ref|ZP_02666130.2| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|386591484|ref|YP_006087884.1| ATP-dependent helicase hrpA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. B182]
 gi|194409027|gb|ACF69246.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205339553|gb|EDZ26317.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|383798528|gb|AFH45610.1| ATP-dependent helicase hrpA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. B182]
          Length = 1306

 Score =  262 bits (670), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTAEALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 466

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 467 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 ITSALSIQ--DPRER 539



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 81  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 141 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|401763611|ref|YP_006578618.1| ATP-dependent RNA helicase HrpA [Enterobacter cloacae subsp.
           cloacae ENHKU01]
 gi|400175145|gb|AFP69994.1| ATP-dependent RNA helicase HrpA [Enterobacter cloacae subsp.
           cloacae ENHKU01]
          Length = 1281

 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+       GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGNESAGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     +LPL++ LS  EQ+RVF   P G R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALSKRDLRHTE--ILPLYARLSNSEQNRVFQ--PHGGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQATVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQATVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|238894496|ref|YP_002919230.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|402781004|ref|YP_006636550.1| ATP-dependent helicase hrpA [Klebsiella pneumoniae subsp.
           pneumoniae 1084]
 gi|238546812|dbj|BAH63163.1| ATP-dependent helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|402541901|gb|AFQ66050.1| ATP-dependent helicase hrpA [Klebsiella pneumoniae subsp.
           pneumoniae 1084]
          Length = 1300

 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|153825287|ref|ZP_01977954.1| ATP-dependent helicase HrpA [Vibrio cholerae MZO-2]
 gi|149741115|gb|EDM55174.1| ATP-dependent helicase HrpA [Vibrio cholerae MZO-2]
          Length = 1309

 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 65/103 (63%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q   +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKSDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|420020334|ref|ZP_14534522.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH10]
 gi|420059889|ref|ZP_14572893.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH19]
 gi|397387985|gb|EJJ79984.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH10]
 gi|397434918|gb|EJK25547.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH19]
          Length = 1211

 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 91  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 150

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 151 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 203

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 204 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 259

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 260 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 319

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 320 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 379

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 380 LEELGAITTDEQATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 439

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 440 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 498

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 499 YLRVREWQDIYTQLRQVVKELGL 521



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 312 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 371

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 372 NIQDGVRLLEELGAITTDEQATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 431

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 432 ITSALSIQ--DPRER 444



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 3/86 (3%)

Query: 55  RVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNL 111
           +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A  +++ R+A E  S+    
Sbjct: 5   QVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAARTVANRIAEELQSEPGGC 64

Query: 112 VGYQIRFEKHRREKTKIVFITEGLLL 137
           +GY++RF  H  E T +  +T+G+LL
Sbjct: 65  IGYKVRFSDHVSENTMVKLMTDGILL 90



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 91   AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 150

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 151  HFNNAPIIEVSGRT 164


>gi|437453553|ref|ZP_20759808.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. 543463 40-18]
 gi|435207995|gb|ELN91421.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. 543463 40-18]
          Length = 716

 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 461

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 462 IQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 521

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 522 TSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|418845273|ref|ZP_13400059.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19443]
 gi|392814082|gb|EJA70046.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19443]
          Length = 1281

 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LKELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 510 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLKELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 78/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P
Sbjct: 33  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLP 92

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    T + 
Sbjct: 93  KICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVK 152

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 153 LMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|416424316|ref|ZP_11691572.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|416432043|ref|ZP_11695984.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|416440643|ref|ZP_11701070.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|416445704|ref|ZP_11704532.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|416449807|ref|ZP_11707019.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|416456935|ref|ZP_11711820.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|416479321|ref|ZP_11722186.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|416485750|ref|ZP_11724793.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|416499951|ref|ZP_11731094.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|416541065|ref|ZP_11750751.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|416575834|ref|ZP_11768521.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|416585591|ref|ZP_11774957.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|416593383|ref|ZP_11779852.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|416598584|ref|ZP_11782935.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|416608339|ref|ZP_11789333.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|416614221|ref|ZP_11792554.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|416621076|ref|ZP_11796139.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|416638323|ref|ZP_11803807.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|416661729|ref|ZP_11815647.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|416666635|ref|ZP_11817668.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|416674644|ref|ZP_11821242.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|416690551|ref|ZP_11825940.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|416704193|ref|ZP_11830105.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|416712709|ref|ZP_11836395.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|416719903|ref|ZP_11841708.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|416724559|ref|ZP_11844979.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|416737130|ref|ZP_11852426.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|416762389|ref|ZP_11866365.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|416768611|ref|ZP_11870649.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|418485488|ref|ZP_13054470.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 80959-06]
 gi|418506350|ref|ZP_13072683.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035327]
 gi|322614892|gb|EFY11817.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619332|gb|EFY16212.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623144|gb|EFY19986.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628434|gb|EFY25222.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634841|gb|EFY31572.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638594|gb|EFY35289.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322645400|gb|EFY41928.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651715|gb|EFY48087.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654385|gb|EFY50707.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661225|gb|EFY57451.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664999|gb|EFY61187.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667743|gb|EFY63903.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671845|gb|EFY67966.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677109|gb|EFY73173.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680228|gb|EFY76267.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685343|gb|EFY81339.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194294|gb|EFZ79490.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323204380|gb|EFZ89388.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323210305|gb|EFZ95199.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217173|gb|EGA01894.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222856|gb|EGA07214.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227249|gb|EGA11419.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232033|gb|EGA16140.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234560|gb|EGA18647.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238013|gb|EGA22072.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243386|gb|EGA27405.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323253694|gb|EGA37521.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323266507|gb|EGA49994.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271231|gb|EGA54658.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|366055378|gb|EHN19713.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 80959-06]
 gi|366083348|gb|EHN47272.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035327]
          Length = 1300

 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|194446497|ref|YP_002040889.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|418809176|ref|ZP_13364728.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21550]
 gi|418813331|ref|ZP_13368852.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 22513]
 gi|418830416|ref|ZP_13385378.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM N18486]
 gi|418837585|ref|ZP_13392457.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM N1543]
 gi|418840277|ref|ZP_13395106.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21554]
 gi|418851103|ref|ZP_13405817.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 37978]
 gi|418854298|ref|ZP_13408977.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19593]
 gi|194405160|gb|ACF65382.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|392773261|gb|EJA29957.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21550]
 gi|392774557|gb|EJA31252.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 22513]
 gi|392798320|gb|EJA54597.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM N1543]
 gi|392801754|gb|EJA57976.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM N18486]
 gi|392810767|gb|EJA66779.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21554]
 gi|392818036|gb|EJA73932.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 37978]
 gi|392825091|gb|EJA80849.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19593]
          Length = 1300

 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|121727542|ref|ZP_01680654.1| ATP-dependent helicase HrpA [Vibrio cholerae V52]
 gi|121630126|gb|EAX62529.1| ATP-dependent helicase HrpA [Vibrio cholerae V52]
          Length = 1146

 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 27  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 86

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 87  HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 140

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 141 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 196

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 197 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 256

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 257 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 316

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 317 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 376

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 377 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 435

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 436 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 465



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 249 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 308

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 309 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 368

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 369 IASALSIQ--DPRER 381



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 27   AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 86

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 87   HFSNAPIIEVSGRT 100



 Score = 40.8 bits (94), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 27  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 60


>gi|425091293|ref|ZP_18494378.1| ATP-dependent RNA helicase hrpA [Klebsiella pneumoniae subsp.
           pneumoniae WGLW5]
 gi|405613450|gb|EKB86198.1| ATP-dependent RNA helicase hrpA [Klebsiella pneumoniae subsp.
           pneumoniae WGLW5]
          Length = 1300

 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +  + T+     LGR LS LPVD  L +M++       +   + +A+ LS+Q
Sbjct: 469 LEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIIASALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 IASALSIQ--DPRER 533



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|418788268|ref|ZP_13344063.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19447]
 gi|418792375|ref|ZP_13348120.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19449]
 gi|418798006|ref|ZP_13353686.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19567]
 gi|392763176|gb|EJA19984.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19447]
 gi|392767575|gb|EJA24339.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19567]
 gi|392768169|gb|EJA24926.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19449]
          Length = 1300

 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|378978543|ref|YP_005226684.1| ATP-dependent helicase [Klebsiella pneumoniae subsp. pneumoniae
           HS11286]
 gi|419974260|ref|ZP_14489680.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH1]
 gi|419979775|ref|ZP_14495064.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH2]
 gi|419984324|ref|ZP_14499471.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH4]
 gi|419990868|ref|ZP_14505837.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH5]
 gi|419996267|ref|ZP_14511070.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH6]
 gi|420002137|ref|ZP_14516790.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH7]
 gi|420008854|ref|ZP_14523341.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH8]
 gi|420014111|ref|ZP_14528419.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH9]
 gi|420025861|ref|ZP_14539867.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH11]
 gi|420032391|ref|ZP_14546206.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH12]
 gi|420036811|ref|ZP_14550469.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH14]
 gi|420043210|ref|ZP_14556699.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH16]
 gi|420049105|ref|ZP_14562415.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH17]
 gi|420054671|ref|ZP_14567843.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH18]
 gi|420066453|ref|ZP_14579253.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH20]
 gi|420071096|ref|ZP_14583744.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH21]
 gi|420077139|ref|ZP_14589606.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH22]
 gi|420084415|ref|ZP_14596674.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH23]
 gi|428939027|ref|ZP_19012144.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae VA360]
 gi|364517954|gb|AEW61082.1| ATP-dependent helicase [Klebsiella pneumoniae subsp. pneumoniae
           HS11286]
 gi|397346302|gb|EJJ39418.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH1]
 gi|397347879|gb|EJJ40983.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH2]
 gi|397354384|gb|EJJ47436.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH4]
 gi|397365393|gb|EJJ58017.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH5]
 gi|397365689|gb|EJJ58311.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH6]
 gi|397371417|gb|EJJ63947.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH7]
 gi|397378796|gb|EJJ71002.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH9]
 gi|397382672|gb|EJJ74829.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH8]
 gi|397396354|gb|EJJ88045.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH11]
 gi|397397849|gb|EJJ89519.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH12]
 gi|397406206|gb|EJJ97635.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH14]
 gi|397413998|gb|EJK05203.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH17]
 gi|397414508|gb|EJK05705.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH16]
 gi|397422657|gb|EJK13616.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH18]
 gi|397429738|gb|EJK20447.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH20]
 gi|397440808|gb|EJK31202.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH21]
 gi|397446366|gb|EJK36585.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH22]
 gi|397450228|gb|EJK40339.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KPNIH23]
 gi|426304651|gb|EKV66790.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae VA360]
          Length = 1281

 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGL 591



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 160



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|289667020|ref|ZP_06488095.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB 4381]
          Length = 1373

 Score =  262 bits (670), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 249/445 (55%), Gaps = 34/445 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LSSYD +++DE HER L+ DFLLG +K LLH   ++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRPDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGP--------YIRILSIIDKKY 420
           +F+  A +I V GR +P+++ Y P+ E D   ++  + G            I++ ID+  
Sbjct: 240 HFDN-APVISVEGRTFPVEVRYRPL-EGDVGDTDDGEHGSGQDGERSVNDAIVAAIDEIT 297

Query: 421 PRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QDRVF+  P 
Sbjct: 298 RIDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDRVFNPGPR 353

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
             R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR GR
Sbjct: 354 --RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHTEPISQASANQRMGR 411

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
            GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP  
Sbjct: 412 CGRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDE 471

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
             +    + L + GAID++ R+T+ GR ++ LPVD+ L +MLV       +  ++ +AA 
Sbjct: 472 RAVADGWQQLLELGAIDAERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAF 531

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDRVRSK- 710
           L +Q P      R P+   A     +   D        L + +AY++   V +D  +SK 
Sbjct: 532 LGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDLTQSKL 584

Query: 711 -KWCKRRGIEEQRFYEVTKLRSQFK 734
             WC R  +   R  E  +L  Q +
Sbjct: 585 RDWCNRHFLGFLRMREWRELHRQLR 609



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 413 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 472

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 473 AVADGWQQLLELGAIDAERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 530

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 531 FLGIQDPRER 540



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           N LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  NQLPIAREAERIIALIRGHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E      + VG+Q+RF     E+++I F+T+G+LL
Sbjct: 135 ARAVAARVAEELKRPLGSTVGFQVRFTDRVSEQSQIKFMTDGILL 179



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 47/63 (74%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LSSYD +++DE HER L+ DFLLG +K LLH   ++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRPDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 47.8 bits (112), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 28/39 (71%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++A+D +LSSYD +I+DE HER L  DFLLG +   LH
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLH 218



 Score = 43.9 bits (102), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 482  LELGAIDAERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAAFLGIQDPRE 539

Query: 1037 R 1037
            R
Sbjct: 540  R 540



 Score = 41.6 bits (96), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M+++
Sbjct: 482  LELGAIDAERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 528


>gi|449328210|gb|AGE94511.1| ATP-dependent RNA helicase HrpA [Citrobacter amalonaticus Y19]
          Length = 1300

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDRRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAISTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDRR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAISTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQAILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTESGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|206576016|ref|YP_002238810.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae 342]
 gi|288935741|ref|YP_003439800.1| ATP-dependent helicase HrpA [Klebsiella variicola At-22]
 gi|206565074|gb|ACI06850.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae 342]
 gi|288890450|gb|ADC58768.1| ATP-dependent helicase HrpA [Klebsiella variicola At-22]
          Length = 1300

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNH-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNHAPIIEVSGRT 253


>gi|26330478|dbj|BAC28969.1| unnamed protein product [Mus musculus]
          Length = 698

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 258/443 (58%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 169 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVD 228

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFNR A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 229 LFSQYFNR-APVLYLEGRQHPIQIFY--------TKQPQQD---YLHAALVSVFQIHQEA 276

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 277 PASQ--DILVFLTGQEEIEAMSKTCRDIARHLPDGCPSMLVLPLYASLPYSQQLRVFQGA 334

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 335 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 394

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 395 GRAGREDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVILQLLAMKVPNVLTFDFMSKP 454

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++IE+++  L    A++ K+    +T +GR ++  P++    K ++  S FH  + +L
Sbjct: 455 SPDHIEAAIAQLDLLVALEHKDDQLTLTPIGRKMAAFPLEPRFAKTILLSSKFHCTEEIL 514

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + ++ RK+  S+ GD +T+LN Y+ +  +  +    K WC
Sbjct: 515 TIVSLLSVDSVLYNPPARRDEVQSVRKKFISSEGDHITLLNIYRTFKNIGGN----KDWC 570

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    V ++R+Q +++
Sbjct: 571 KENFVNSKNMLLVAEVRAQLREI 593



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ + + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 62  RRSLPIFRARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 121

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RFE    E T+I F+T+G+LLR+
Sbjct: 122 AAISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLRE 169



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 399 REDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVILQLLAMKVPNVLTFDFMSKPSPDH 458

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           IE+++  L    A++ K+    +T +GR ++  P++    K ++  S FH  + +L +
Sbjct: 459 IEAAIAQLDLLVALEHKDDQLTLTPIGRKMAAFPLEPRFAKTILLSSKFHCTEEILTI 516



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 12/122 (9%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      +E+  E G+      R E + + +   +   D   ++ A +D+ L  Y  +
Sbjct: 123  AISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLREAISDSLLRKYSCV 182

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHTYFNRIAKDLL 1183
            +LDE HER +H D L GV+K       E     +K+I+MSAT++++LF  YFNR     L
Sbjct: 183  ILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVDLFSQYFNRAPVLYL 242

Query: 1184 SG 1185
             G
Sbjct: 243  EG 244


>gi|417326229|ref|ZP_12111967.1| helicase HrpA [Salmonella enterica subsp. enterica serovar Adelaide
           str. A4-669]
 gi|353573774|gb|EHC37029.1| helicase HrpA [Salmonella enterica subsp. enterica serovar Adelaide
           str. A4-669]
          Length = 1006

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 408 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 467

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 468 IQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 527

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 528 TSALSIQ--DPRER 539



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 81  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 141 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 185



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|262275824|ref|ZP_06053633.1| ATP-dependent helicase HrpA [Grimontia hollisae CIP 101886]
 gi|262219632|gb|EEY70948.1| ATP-dependent helicase HrpA [Grimontia hollisae CIP 101886]
          Length = 1300

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/443 (34%), Positives = 247/443 (55%), Gaps = 20/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 181 AEIQHDRYLNQYDCIIIDEAHERSLNIDFILGYLKQLLPKRPDLKLIITSATIDPERFSN 240

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A II+V GR YP+++ Y P+VE     SE  D      I   +D+ +     GD+
Sbjct: 241 HFGG-APIIEVSGRTYPVEVRYRPLVE----DSEDTDRDQLQAIFDAVDELHEEGS-GDI 294

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N +     +LPL++ LS  EQ+RVF   P   R+ +++TN
Sbjct: 295 LIFMNGEREIRDTADALNKRNLRDTE--ILPLYARLSSSEQNRVFQ--PHSGRRIVLATN 350

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 351 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSDGICI 410

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF++ P + NI   VR L
Sbjct: 411 RLYSEEDFLSRPEFTDPEILRTNLASVILQMTAIGLGDIAAFPFVQPPDSRNISDGVRLL 470

Query: 609 TQHGAI------DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
            + GA+      D ++R+T +GR L+ LP+D  L +M++       ++ V+ +A+ LS+Q
Sbjct: 471 EELGALKESKKGDDQKRLTDIGRSLARLPIDPRLARMVLEAGRLGALNEVMVIASALSIQ 530

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   +       D L  +N + E++  ++  +     +K CK+  + 
Sbjct: 531 DPRERPSEKQQAADEKHRRFNDKESDFLAYVNLW-EYIKEQQKALSGNQFRKQCKKDYLN 589

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   +  Q +QV+ + G 
Sbjct: 590 YLRIREWQDVHYQIRQVIHELGF 612



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 80/136 (58%), Gaps = 8/136 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF++ P + 
Sbjct: 402 GRVSDGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTAIGLGDIAAFPFVQPPDSR 461

Query: 868 NIESSVRSLTQHGAI------DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           NI   VR L + GA+      D ++R+T +GR L+ LP+D  L +M++       ++ ++
Sbjct: 462 NISDGVRLLEELGALKESKKGDDQKRLTDIGRSLARLPIDPRLARMVLEAGRLGALNEVM 521

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 522 VIASALSIQ--DPRER 535



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
            LPV+Q K EI   +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 77  QLPVSQKKDEIAQAIANNQVVIVAGETGSGKTTQLPKICMELGLGVSGVIGHTQPRRLAA 136

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++    VGY++RF     E++++  +T+G+LL
Sbjct: 137 RSVATRIAEELETELGKTVGYKVRFNDQVSEESRVKLMTDGILL 180



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 181  AEIQHDRYLNQYDCIIIDEAHERSLNIDFILGYLKQLLPKRPDLKLIITSATIDPERFSN 240

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 241  HFGGAPIIEVSGRT 254


>gi|12721070|gb|AAK02853.1| HrpA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1304

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 247/445 (55%), Gaps = 26/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE    + ++L       IL  +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVE--NEEQDQLQA-----ILDAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ + K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQDLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   NI+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRNIQDGIKLL 472

Query: 609 TQHGA-------IDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +  A          K ++T  G+ L+ LPVD  L KML+     + +  V+ + + LS+
Sbjct: 473 EELEAFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKLNCLHEVMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYK----EWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN ++    +   + K++ R  + C++  
Sbjct: 533 QDPRERPQEKQQSADDKHRRFADKKSDFLAFLNLWQFIQTQQKALSKNQFR--RLCQKDY 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   +  Q +  + + GL
Sbjct: 591 LNYLRIREWQDIYHQIRLTVREMGL 615



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 3/114 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---I 83
           + +K  E   +LPV+Q K EI   + + +VV+IAG+TG GK+TQ+P+  ++ G      I
Sbjct: 72  SAVKTIEFPENLPVSQRKAEIQKLISQHQVVVIAGETGSGKTTQLPKMCLEFGRGTKGLI 131

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             TQPRRIA  S++ R+A E  ++  +LVGY++RF     + T +  +T+G+LL
Sbjct: 132 GHTQPRRIAARSVATRIAEELKTELGDLVGYKVRFNDQISDNTMVKLMTDGILL 185



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   N
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRN 464

Query: 869 IESSVRSLTQHGA-------IDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L +  A          K ++T  G+ L+ LPVD  L KML+     + +  ++
Sbjct: 465 IQDGIKLLEELEAFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKLNCLHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 43.5 bits (101), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYL 219


>gi|421885956|ref|ZP_16317139.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Senftenberg str. SS209]
 gi|379984595|emb|CCF89412.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Senftenberg str. SS209]
          Length = 1295

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 175 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 234

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 235 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 287

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 288 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 343

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 344 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 403

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 404 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIASFPFVEAPDKRNIQDGVRL 463

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 464 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 523

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 524 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 582

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 583 YLRVREWQDIYTQLRQVVKELGI 605



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 396 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIASFPFVEAPDKR 455

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 456 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 515

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 516 ITSALSIQ--DPRER 528



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 70  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 129

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 130 ARTVANRIAEELQTELGGCIGYKVRFSDHVSSNTMVKLMTDGILL 174



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 175  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 234

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 235  HFNNAPIIEVSGRT 248


>gi|290509767|ref|ZP_06549138.1| ATP-dependent helicase HrpA [Klebsiella sp. 1_1_55]
 gi|289779161|gb|EFD87158.1| ATP-dependent helicase HrpA [Klebsiella sp. 1_1_55]
          Length = 1300

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNH-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++  + +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGSCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNHAPIIEVSGRT 253


>gi|161723312|ref|NP_245706.2| ATP-dependent RNA helicase HrpA [Pasteurella multocida subsp.
           multocida str. Pm70]
          Length = 1279

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 247/445 (55%), Gaps = 26/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 161 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE    + ++L       IL  +D+      RGD+
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPVVE--NEEQDQLQA-----ILDAVDELQAEG-RGDI 271

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ + K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 272 LIFMNGEREIRDTAEALQKQDLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 327

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 328 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 387

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   NI+  ++ L
Sbjct: 388 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRNIQDGIKLL 447

Query: 609 TQHGA-------IDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +  A          K ++T  G+ L+ LPVD  L KML+     + +  V+ + + LS+
Sbjct: 448 EELEAFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKLNCLHEVMIIVSALSI 507

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYK----EWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN ++    +   + K++ R  + C++  
Sbjct: 508 QDPRERPQEKQQSADDKHRRFADKKSDFLAFLNLWQFIQTQQKALSKNQFR--RLCQKDY 565

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   +  Q +  + + GL
Sbjct: 566 LNYLRIREWQDIYHQIRLTVREMGL 590



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 3/114 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---I 83
           + +K  E   +LPV+Q K EI   + + +VV+IAG+TG GK+TQ+P+  ++ G      I
Sbjct: 47  SAVKTIEFPENLPVSQRKAEIQKLISQHQVVVIAGETGSGKTTQLPKMCLEFGRGTKGLI 106

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             TQPRRIA  S++ R+A E  ++  +LVGY++RF     + T +  +T+G+LL
Sbjct: 107 GHTQPRRIAARSVATRIAEELKTELGDLVGYKVRFNDQISDNTMVKLMTDGILL 160



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   N
Sbjct: 380 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRN 439

Query: 869 IESSVRSLTQHGA-------IDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L +  A          K ++T  G+ L+ LPVD  L KML+     + +  ++
Sbjct: 440 IQDGIKLLEELEAFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKLNCLHEVM 499

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 500 IIVSALSIQ--DPRER 513



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 161  AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234



 Score = 43.5 bits (101), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD LI+DE HER L  DF+LG +
Sbjct: 161 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYL 194


>gi|197362356|ref|YP_002141993.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127690|gb|AAV77196.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093833|emb|CAR59316.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 1300

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 77/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P
Sbjct: 52  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLP 111

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+  E  ++    +GY++RF  H    T + 
Sbjct: 112 KICMELGRGIKGLIGHTQPRRLAARTVANRIDEELQTEPGGCIGYKVRFSDHVSSNTMVK 171

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 172 LMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|375001240|ref|ZP_09725580.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Infantis str. SARB27]
 gi|353075928|gb|EHB41688.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Infantis str. SARB27]
          Length = 1306

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 466

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 467 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 ITSALSIQ--DPRER 539



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 81  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 141 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|308501647|ref|XP_003113008.1| CRE-MOG-1 protein [Caenorhabditis remanei]
 gi|308265309|gb|EFP09262.1| CRE-MOG-1 protein [Caenorhabditis remanei]
          Length = 1134

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 152/434 (35%), Positives = 248/434 (57%), Gaps = 18/434 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L  Y  +++DE HER L+ D L G+++ ++   A++K+I+ SAT++ + F  +
Sbjct: 548 ECLGDGTLDQYSAIIMDEAHERSLNTDVLFGLLREVVAKRADLKLIVTSATMDADKFADF 607

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F        +PGR +P++L +H      RT  E        + ++I    +     GD+L
Sbjct: 608 FGGNCPTFTIPGRTFPVEL-FHA-----RTPVEDYVDAAVKQAVTI----HLGGMDGDIL 657

Query: 430 IFMSGISEISSIVRAAQEYN---EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           IFM G  +I       +E     +++    VLP++S L  + Q ++F  AP G+RK IV+
Sbjct: 658 IFMPGQEDIECTCEMIKEKLGELDEAPPLAVLPIYSQLPSDLQAKIFQRAPGGMRKAIVA 717

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TNIAETS+T+DGI FV+D G  K   Y+    M  L  F +S+ASA QR GRAGRTGPG 
Sbjct: 718 TNIAETSLTVDGILFVIDPGFCKMKVYNPRIGMDALSIFPVSQASANQRTGRAGRTGPGQ 777

Query: 547 CYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           CYRLY+E Q+   L   + PEI+R ++ +++L L  +G+ D+ KF F++APP +N+ +S+
Sbjct: 778 CYRLYTERQFKDELLRSTVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQDNMLNSM 837

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
             L   GA+D+  ++TS+GR + + P+D  L KML+  S     D VL++ ++LSV + F
Sbjct: 838 YQLWTLGALDNTGQLTSMGRKMVEFPLDPTLSKMLIVSSEMGCSDEVLTIVSMLSVPAIF 897

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYE 725
                R+ + +  +++ +    D LT LN Y +W    ++   S KWC    +  +   +
Sbjct: 898 FRPKGREEEADAKKEKFQVPESDHLTFLNVYLQW----REHKYSAKWCADNYLHVKALKK 953

Query: 726 VTKLRSQFKQVLGD 739
           V ++R+Q K+++ D
Sbjct: 954 VREVRAQLKEIMQD 967



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 85/138 (61%), Gaps = 16/138 (11%)

Query: 18  DFKQKEKFSTLMK-------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTG 64
           ++K+  +F++ MK             I++ +  LPV   +Q++++ + +  VVII G+TG
Sbjct: 411 NYKESHQFASHMKDNEAVSDFAMEKTIKQQREYLPVFACRQKMMNVIRENNVVIIVGETG 470

Query: 65  CGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKH 121
            GK+TQ+ QYL++ GF     I CTQPRR+A +S+++RVA E        VGY IRFE  
Sbjct: 471 SGKTTQLAQYLLEDGFGESGLIGCTQPRRVAAMSVARRVADEMGVDLGQDVGYAIRFEDC 530

Query: 122 RREKTKIVFITEGLLLRQ 139
             EKT I ++T+G+LLR+
Sbjct: 531 TSEKTIIKYMTDGILLRE 548



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 79/125 (63%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E Q+   L   + PEI+R ++ +++L L  +G+ D+ KF F++APP +
Sbjct: 772 RTGPGQCYRLYTERQFKDELLRSTVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQD 831

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           N+ +S+  L   GA+D+  ++T++GR + + P+D  L KML+  S     D +L +   L
Sbjct: 832 NMLNSMYQLWTLGALDNTGQLTSMGRKMVEFPLDPTLSKMLIVSSEMGCSDEVLTIVSML 891

Query: 928 NFGAI 932
           +  AI
Sbjct: 892 SVPAI 896



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 37/58 (63%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
             D  L  Y  +++DE HER L+ D L G+++ ++   A++K+I+ SAT++ + F  +F
Sbjct: 551  GDGTLDQYSAIIMDEAHERSLNTDVLFGLLREVVAKRADLKLIVTSATMDADKFADFF 608


>gi|254225333|ref|ZP_04918945.1| ATP-dependent helicase HrpA [Vibrio cholerae V51]
 gi|125622174|gb|EAZ50496.1| ATP-dependent helicase HrpA [Vibrio cholerae V51]
          Length = 1309

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASASQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S   ++ CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAKAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|416569491|ref|ZP_11765568.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 4441 H]
 gi|418511274|ref|ZP_13077540.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Pomona str. ATCC 10729]
 gi|363576568|gb|EHL60399.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 4441 H]
 gi|366084949|gb|EHN48843.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Pomona str. ATCC 10729]
          Length = 1300

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|207856862|ref|YP_002243513.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|375118986|ref|ZP_09764153.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Dublin str. SD3246]
 gi|206708665|emb|CAR32990.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326623253|gb|EGE29598.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Dublin str. SD3246]
          Length = 1300

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|299753819|ref|XP_001833549.2| pre-mRNA splicing factor [Coprinopsis cinerea okayama7#130]
 gi|298410477|gb|EAU88277.2| pre-mRNA splicing factor [Coprinopsis cinerea okayama7#130]
          Length = 674

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/448 (35%), Positives = 250/448 (55%), Gaps = 44/448 (9%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E+  D  LS Y V+++DE+HER ++ D LLG++K +     E+++I+ SAT++   F  Y
Sbjct: 152 ELLVDPLLSRYSVIMVDEVHERSVYTDLLLGMLKKIRRKRPELRLIVSSATMDAAYFLNY 211

Query: 370 FNRI-----AKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGP-YIRILSIIDKKYPRT 423
           F        A +I + GR+YP+Q+ Y     +D       +P P Y+R  + +       
Sbjct: 212 FTNDTSSDEATVISLEGRMYPVQVAY-----ID-------EPVPDYVRAAAQLAWDINVQ 259

Query: 424 ER-GDVLIFMSGISEISSIVRAAQEYNEK-------SQGWIVLPLHSTLSLEEQDRVFHY 475
            R GD+LIF++G  +I    R   E +E+       +   I++PLH+ L+ +EQ + F  
Sbjct: 260 RRPGDILIFLTGREDID---RCLDELSERIPLLPPNAPRMILIPLHAGLTTDEQLKAFLP 316

Query: 476 APEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQR 535
           A +G RK IVSTNIAE S+TIDGIR+V+DSG VK   Y+ TA MS+L     SKA+A QR
Sbjct: 317 AEKGTRKIIVSTNIAEASVTIDGIRYVIDSGFVKIRVYNPTASMSSLVVVPTSKAAATQR 376

Query: 536 KGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEA 595
            GRAGRT  GVCYRLY++  Y  L   + PEI R  + SL+L L  +G+ D+ KFP++  
Sbjct: 377 AGRAGRTSNGVCYRLYTQAAYDALPAATPPEISRTDLTSLILQLKALGVDDLMKFPWVTP 436

Query: 596 PPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           PPAE++  ++ +L+  G I     +T  G  +++ P++  + KML     F   + +L++
Sbjct: 437 PPAESVLRALEALSASGLITDSGHLTHTGSKIAEYPIEHNIAKMLFASEDFKCGEEILTI 496

Query: 656 AAVLSVQSPFTNRAFRDPD------CETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS 709
           AA++SVQ+      F  PD       E  R++  +  GD LT+LNAY  ++   +    S
Sbjct: 497 AAMISVQN-----VFVIPDGAPGALAELERRKFTAEEGDHLTLLNAYNAFIRYGQ----S 547

Query: 710 KKWCKRRGIEEQRFYEVTKLRSQFKQVL 737
             WCK   +  +       +R+Q K+ +
Sbjct: 548 SSWCKSHALSFRAMSRAVSIRAQLKKYM 575



 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 76/112 (67%), Gaps = 5/112 (4%)

Query: 33  ETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR----IACTQP 88
           + +  LP+ +++ +++ +V K  V II G TGCGK+TQ+PQ+L +A +      IACTQP
Sbjct: 41  DQRTRLPIYKHRDKLLYSVEKYGVTIIVGQTGCGKTTQLPQFLYEAQWASDGRVIACTQP 100

Query: 89  RRIACISLSKRVAYETLSQYSNLVGYQIRFEK-HRREKTKIVFITEGLLLRQ 139
           RR+A  S++ RVA E  +   + VGY IRFE    +E+T+I+++T+G+L R+
Sbjct: 101 RRVAATSVATRVAQEVGTTLGHEVGYTIRFEDVSDKERTRILYLTDGMLFRE 152



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 60/100 (60%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  GVCYRLY++  Y  L   + PEI R  + SL+L L  +G+ D+ KFP++  PPAE+
Sbjct: 382 RTSNGVCYRLYTQAAYDALPAATPPEISRTDLTSLILQLKALGVDDLMKFPWVTPPPAES 441

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKML 908
           +  ++ +L+  G I     +T  G  +++ P++  + KML
Sbjct: 442 VLRALEALSASGLITDSGHLTHTGSKIAEYPIEHNIAKML 481



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 13/97 (13%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  LS Y V+++DE+HER ++ D LLG++K +     E+++I+ SAT++   F  YF   
Sbjct: 156  DPLLSRYSVIMVDEVHERSVYTDLLLGMLKKIRRKRPELRLIVSSATMDAAYFLNYF--- 212

Query: 1179 AKDLLSGSTARSHKDVTILKVILASGLYP-QVAIGDE 1214
                   +   S  + T++   L   +YP QVA  DE
Sbjct: 213  -------TNDTSSDEATVIS--LEGRMYPVQVAYIDE 240


>gi|254508102|ref|ZP_05120228.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus 16]
 gi|219548937|gb|EED25936.1| ATP-dependent helicase HrpA [Vibrio parahaemolyticus 16]
          Length = 1321

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 147/393 (37%), Positives = 229/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 204 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 263

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 264 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 316

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A    N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 317 LIFMNGEREIRDTADALSRRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 372

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 373 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 432

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 433 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 492

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D K+R+TS+GR L+ LP+D  L +M++    +     ++ +A+ LS+Q 
Sbjct: 493 EELGAINADAKDPKKRLTSIGRQLARLPIDPRLARMVLESPKYGATKELMIIASALSIQD 552

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   K       D LT +N +
Sbjct: 553 PRERPSDKQQSSDDKHKRFFHEESDFLTFVNLW 585



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 424 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 483

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T++GR L+ LP+D  L +M++    +     +++
Sbjct: 484 NIQDGVRLLEELGAINADAKDPKKRLTSIGRQLARLPIDPRLARMVLESPKYGATKELMI 543

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 544 IASALSIQ--DPRER 556



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 101 LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 160

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 161 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 203



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 204  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 263

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 264  HFNNAPIIEVSGRT 277



 Score = 40.0 bits (92), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 204 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 237


>gi|437522394|ref|ZP_20779024.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. 648899 3-17]
 gi|435250349|gb|ELO30081.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. 648899 3-17]
          Length = 893

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 461

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 462 IQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 521

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 522 TSALSIQ--DPRER 533



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|229523518|ref|ZP_04412923.1| ATP-dependent helicase HrpA [Vibrio cholerae bv. albensis VL426]
 gi|229337099|gb|EEO02116.1| ATP-dependent helicase HrpA [Vibrio cholerae bv. albensis VL426]
          Length = 1309

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKQRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S   ++ CK   + 
Sbjct: 540 DPRERPSDKQQASDEKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 97.1 bits (240), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKQRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAKAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|213648044|ref|ZP_03378097.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|25513338|pir||AI0664 ATP-dependent helicase HrpA [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502541|emb|CAD01690.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137615|gb|AAO69177.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 1300

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 78/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P
Sbjct: 52  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLP 111

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    T + 
Sbjct: 112 KICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVK 171

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 172 LMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|213161267|ref|ZP_03346977.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 1300

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 78/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P
Sbjct: 52  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLP 111

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    T + 
Sbjct: 112 KICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVK 171

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 172 LMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|437892120|ref|ZP_20849371.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 6.0562-1]
 gi|435325982|gb|ELO97822.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 6.0562-1]
          Length = 866

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 408 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 467

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 468 IQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 527

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 528 TSALSIQ--DPRER 539



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 81  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 141 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|205359700|ref|ZP_02831439.2| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205343843|gb|EDZ30607.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
          Length = 1295

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 175 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 234

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 235 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 287

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 288 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 343

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 344 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 403

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 404 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 463

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 464 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 523

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 524 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 582

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 583 YLRVREWQDIYTQLRQVVKELGI 605



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 396 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 455

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 456 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 515

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 516 ITSALSIQ--DPRER 528



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 78/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P
Sbjct: 47  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLP 106

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    T + 
Sbjct: 107 KICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVK 166

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 167 LMTDGILL 174



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 175  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 234

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 235  HFNNAPIIEVSGRT 248


>gi|161486800|ref|NP_805328.2| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|161501942|ref|NP_455863.2| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
          Length = 1281

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 510 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 78/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P
Sbjct: 33  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLP 92

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    T + 
Sbjct: 93  KICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVK 152

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 153 LMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|452823527|gb|EME30537.1| pre-mRNA-splicing factor ATP-dependent RNA helicase [Galdieria
           sulphuraria]
          Length = 1110

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 252/438 (57%), Gaps = 20/438 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E  +D  L  Y  +++DE HER L+ D L G++K L    +++KII+ SAT+  E F  +
Sbjct: 531 ESLSDPDLEKYSCVIMDEAHERSLNTDVLFGILKQLASRRSDLKIIVTSATLESEKFAEF 590

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI-IDKKYPRTERGDV 428
           F R+  + ++PGR YP+ + +   V  D  +      G   ++L I +    P    GD+
Sbjct: 591 FGRVP-VFRIPGRTYPVDIFHSKSVVEDYVE------GAVRQVLQIHLQATVP----GDI 639

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQG---WIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           L+FM+G  +I           EK +G    ++LP++S L+ + Q ++F  APEG RK +V
Sbjct: 640 LVFMTGQEDIEVTCETIATRLEKLEGAKPLLILPIYSQLASDLQAKIFEPAPEGTRKVVV 699

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETS+T+DG+++VVD+G  K  +Y+    M  L    +S+ASA QR GRAGRTGPG
Sbjct: 700 ATNIAETSLTVDGVKYVVDTGFCKLKTYNPRIGMDALLLCPVSQASASQRAGRAGRTGPG 759

Query: 546 VCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            CYRLY+E  +S  +   + PEI+R ++  ++L L  +G+ D+  FPF++ PP ENI  S
Sbjct: 760 RCYRLYTEYAFSHEMLPANVPEIQRTNLGHVVLLLKSLGVSDLLHFPFMDPPPPENIVKS 819

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           +  L   GA+D   R+T LG+ +S  P+D PL  M++ G  F   D V+++ ++LSV S 
Sbjct: 820 MLGLWFLGALDGGGRLTDLGKRMSSFPLDPPLSAMILAGERFGCSDEVVTIVSMLSVPSI 879

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F     R+ + +  R++      D LT+L+ ++ +   + +  R+ +WC +  +  +   
Sbjct: 880 FIRPPGREEEADAVREKFLVPESDHLTLLHIFQRY---RSNGCRA-EWCNKHFLNSKGMR 935

Query: 725 EVTKLRSQFKQVLGDSGL 742
           +  ++RSQ   ++ + G+
Sbjct: 936 KAAEVRSQLVDLMKEQGM 953



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 78/126 (61%), Gaps = 3/126 (2%)

Query: 17  LDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV 76
           L  K  E+      I + + +LP+   K +I+  V + ++V+I G+TG GK+TQ+ QYL 
Sbjct: 406 LTGKASEREERQHSIAQQRKTLPIYGMKNDILRVVRENQIVVIVGETGSGKTTQLTQYLH 465

Query: 77  QAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITE 133
           + G+ +   I CTQPRR+A +S++ RVA E   +    VGY IRFE    EKT I ++T+
Sbjct: 466 EEGYSKRGIIGCTQPRRVAAVSVANRVAEEMQVELGKEVGYAIRFEDFTCEKTVIKYMTD 525

Query: 134 GLLLRQ 139
           G+LLR+
Sbjct: 526 GILLRE 531



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  +S  +   + PEI+R ++  ++L L  +G+ D+  FPF++ PP E
Sbjct: 755 RTGPGRCYRLYTEYAFSHEMLPANVPEIQRTNLGHVVLLLKSLGVSDLLHFPFMDPPPPE 814

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           NI  S+  L   GA+D   R+T LG+ +S  P+D PL  M++ G  F   D ++ +   L
Sbjct: 815 NIVKSMLGLWFLGALDGGGRLTDLGKRMSSFPLDPPLSAMILAGERFGCSDEVVTIVSML 874

Query: 928 NFGAI 932
           +  +I
Sbjct: 875 SVPSI 879



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR 1177
            +D  L  Y  +++DE HER L+ D L G++K L    +++KII+ SAT+  E F  +F R
Sbjct: 534  SDPDLEKYSCVIMDEAHERSLNTDVLFGILKQLASRRSDLKIIVTSATLESEKFAEFFGR 593

Query: 1178 IAKDLLSGST 1187
            +    + G T
Sbjct: 594  VPVFRIPGRT 603


>gi|418826851|ref|ZP_13382034.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Newport str. CVM 22462]
 gi|392803874|gb|EJA60055.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Newport str. CVM 22462]
          Length = 1028

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|417460242|ref|ZP_12164243.1| ATP-dependent helicase hrpA [Salmonella enterica subsp. enterica
           serovar Montevideo str. S5-403]
 gi|353632424|gb|EHC79483.1| ATP-dependent helicase hrpA [Salmonella enterica subsp. enterica
           serovar Montevideo str. S5-403]
          Length = 966

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 408 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 467

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 468 IQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 527

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 528 TSALSIQ--DPRER 539



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 81  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 141 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|416468582|ref|ZP_11718043.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322641017|gb|EFY37664.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
          Length = 1306

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 466

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 467 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 ITSALSIQ--DPRER 539



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 81  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 141 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|426237376|ref|XP_004012637.1| PREDICTED: putative ATP-dependent RNA helicase DHX33 [Ovis aries]
          Length = 534

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/441 (34%), Positives = 250/441 (56%), Gaps = 30/441 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E   D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 5   EAILDSLLRKYSCIILDEAHERTVHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 64

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSIIDKKYPR 422
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+       
Sbjct: 65  LFSQYFNG-APVLYLEGRQHPIQIFY--------TKQPQHD---YLHAALVSVFQIHQEA 112

Query: 423 TERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  AP+
Sbjct: 113 PSSHDILVFLTGQEEIEAMSKTCRDIAKHLPDGCPSMLVLPLYASLPYAQQLRVFQGAPK 172

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
           G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR GR
Sbjct: 173 GYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRTGR 232

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
           AGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  
Sbjct: 233 AGREDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSP 292

Query: 599 ENIESSVRSLTQHGAI---DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           ++I++++  L   GA+   D +  +T +GR ++  P++    K ++    FH  + +L++
Sbjct: 293 DHIQAAIAQLELLGALEHRDGQLTLTPMGRKMAAFPLEPKFAKTILLSPKFHCTEEILTI 352

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKR 715
            A+LSV S   N   R  + ++ RK+  S+ GD LT+LN Y+ +    K+   +K+WCK 
Sbjct: 353 VALLSVDSILYNPPSRRDEVQSVRKKFVSSEGDHLTLLNVYRTF----KNTGGNKEWCKE 408

Query: 716 RGIEEQRFYEVTKLRSQFKQV 736
             +  +    V ++R+Q + +
Sbjct: 409 NFVNSKNMMLVAEVRAQLRDI 429



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 72/127 (56%), Gaps = 3/127 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 235 REDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 294

Query: 869 IESSVRSLTQHGAI---DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
           I++++  L   GA+   D +  +T +GR ++  P++    K ++    FH  + +L +  
Sbjct: 295 IQAAIAQLELLGALEHRDGQLTLTPMGRKMAAFPLEPKFAKTILLSPKFHCTEEILTIVA 354

Query: 926 ALNFGAI 932
            L+  +I
Sbjct: 355 LLSVDSI 361



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 5/63 (7%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHT 1173
            D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF  
Sbjct: 9    DSLLRKYSCIILDEAHERTVHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFSQ 68

Query: 1174 YFN 1176
            YFN
Sbjct: 69   YFN 71


>gi|437185104|ref|ZP_20708763.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. CVM_76-3618]
 gi|435160179|gb|ELN46479.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. CVM_76-3618]
          Length = 796

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 461

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 462 IQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 521

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 522 TSALSIQ--DPRER 533



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|223993171|ref|XP_002286269.1| ATP dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220977584|gb|EED95910.1| ATP dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 1191

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/433 (35%), Positives = 238/433 (54%), Gaps = 20/433 (4%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E  ADN L  Y  L+LDE HER +H D L G++K L+    ++K+I+ SAT++ E F +Y
Sbjct: 642  EYLADNDLKRYGALMLDEAHERTIHTDVLFGLLKDLMRRRPDMKLIVTSATLDAEKFSSY 701

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F     I  +PGR +P+++ Y    E     S+ LD    I I+ I    +     GD+L
Sbjct: 702  FFECP-IFTIPGRTFPVEILYTKEPE-----SDYLDAA-LITIMQI----HLSEPAGDIL 750

Query: 430  IFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
            +F++G  EI +         +   + +   I+LP++S+L  E Q R+F  AP G RKCIV
Sbjct: 751  LFLTGQEEIDTACETLFSRMKALGDLAPELIILPVYSSLPSEMQSRIFEPAPPGTRKCIV 810

Query: 486  STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
            +TNIAE S+TIDGI +VVD G  K+ +++    M +L    IS+ASA QR GRAGRTGPG
Sbjct: 811  ATNIAEASLTIDGIYYVVDPGFSKQKAFNAKLGMDSLVVTPISQASARQRAGRAGRTGPG 870

Query: 546  VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
             CYRLY+E  Y + +   + PEI+R ++ +++L L  MG+ D+  F F++ PP   +  +
Sbjct: 871  KCYRLYTEMAYRNEMLPTNIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVATLVGA 930

Query: 605  VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            +  L   GA+D +  +T LGR +++ P++  L KML+        D +L++ ++LSV +P
Sbjct: 931  MEGLNALGALDDEGLLTRLGRKMAEFPLEPNLSKMLLLSVDLGCSDEILTITSLLSVDNP 990

Query: 665  FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
            F     +    +  + +     GD LT+L  YK W   K     S  WC    I+ +   
Sbjct: 991  FYRPRDKQGQADMKKAKFHQAEGDHLTLLAVYKAWEASK----FSNPWCFENFIQARSMK 1046

Query: 725  EVTKLRSQFKQVL 737
                +R Q   ++
Sbjct: 1047 RAQDVRKQLVTIM 1059



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 83/132 (62%), Gaps = 10/132 (7%)

Query: 18  DFKQKEKFSTL-------MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQ 70
           ++KQK +  TL         I++ + SLP+ + K E++  + + +V+++ G+TG GK+TQ
Sbjct: 511 EWKQKAESKTLSYGIISNRSIKDQRESLPIYRLKPELMRAMSENQVLVVIGETGSGKTTQ 570

Query: 71  IPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           + QY+ + G  +   I CTQPRR+A +S++KRV+ E        VGY IRF+    ++T 
Sbjct: 571 MTQYMHELGITKNGMIGCTQPRRVAAVSVAKRVSEEFGCTLGEEVGYSIRFDDATSKETI 630

Query: 128 IVFITEGLLLRQ 139
           I ++T+G+L+R+
Sbjct: 631 IKYMTDGMLMRE 642



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 29/178 (16%)

Query: 808  SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
             RTGPG CYRLY+E  Y + +   + PEI+R ++ +++L L  MG+ D+  F F++ PP 
Sbjct: 865  GRTGPGKCYRLYTEMAYRNEMLPTNIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPV 924

Query: 867  ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
              +  ++  L   GA+D +  +T LGR +++ P++  L KML+               L+
Sbjct: 925  ATLVGAMEGLNALGALDDEGLLTRLGRKMAEFPLEPNLSKMLL---------------LS 969

Query: 927  LNFGAIDSKERVTSLGRFLSDLPVDIPL-------GKMLVFGSMFHQIDTMLLLDLAL 977
            ++ G  D    +TSL      L VD P        G+  +  + FHQ +   L  LA+
Sbjct: 970  VDLGCSDEILTITSL------LSVDNPFYRPRDKQGQADMKKAKFHQAEGDHLTLLAV 1021



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            ADN L  Y  L+LDE HER +H D L G++K L+    ++K+I+ SAT++ E F +YF
Sbjct: 645  ADNDLKRYGALMLDEAHERTIHTDVLFGLLKDLMRRRPDMKLIVTSATLDAEKFSSYF 702


>gi|198245776|ref|YP_002215507.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|378955161|ref|YP_005212648.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Gallinarum/pullorum str. RKS5078]
 gi|197940292|gb|ACH77625.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|357205772|gb|AET53818.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Gallinarum/pullorum str. RKS5078]
          Length = 1306

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 466

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 467 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 ITSALSIQ--DPRER 539



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 81  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 141 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|83645427|ref|YP_433862.1| ATP-dependent helicase HrpA [Hahella chejuensis KCTC 2396]
 gi|83633470|gb|ABC29437.1| ATP-dependent helicase HrpA [Hahella chejuensis KCTC 2396]
          Length = 1290

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 153/440 (34%), Positives = 254/440 (57%), Gaps = 27/440 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D FL+ YD +++DE HER L+ DFL+G +K LL    ++K+I+ SATI+++ F  
Sbjct: 170 AETQNDRFLNRYDTIIIDEAHERSLNIDFLIGYLKNLLPKRPDLKVIITSATIDLDRFSE 229

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTER--- 425
           +FN  A +++V GR YP++L Y P+  +D    +++D G    ++ +I ++  R ER   
Sbjct: 230 HFNG-APVVEVSGRTYPVELHYRPLTTMD----DEVDIGLQDGVVHVI-REIERMEREQR 283

Query: 426 ---GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRK 482
              GD+LIFM G  EI     A +   E+ +   +LPL++ LS +EQ+R+F     G R+
Sbjct: 284 KPPGDILIFMVGEREIRET--AQRLRKEEFRNTEILPLYARLSNQEQNRIFQ--SHGGRR 339

Query: 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542
            +VSTN+AETS+T+ GIR+V+D G+V+   Y   +K+  L    IS+ASAEQRKGR GR 
Sbjct: 340 IVVSTNVAETSLTVPGIRYVIDPGQVRISRYSYRSKVQRLPIEAISQASAEQRKGRCGRV 399

Query: 543 GPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
             GVC+RLYSEE ++    ++ PEI R ++ S++L ++ + LGD++KFPF++ P    I 
Sbjct: 400 AEGVCFRLYSEEDFNGRDPFTDPEILRTNLASVILQMLSLRLGDIQKFPFMQKPDKRYIN 459

Query: 603 SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
              + L + GA++++ ++T +GR L+  P+D  L +MLV  +  H +  +L + + L+VQ
Sbjct: 460 DGYKLLEELGAVNAQRQMTPIGRTLARFPIDPRLARMLVAAAEGHCLKEMLIIVSALAVQ 519

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRV-----RSKKWCKRRG 717
            P           +    +      D +++LN    W G +  R      + + +CK+  
Sbjct: 520 DPRERPMEFQQAADEKHAQWADEQSDFVSLLNL---WNGYETQRQELSANQLRNYCKKNF 576

Query: 718 IEEQRFYEVTKLRSQFKQVL 737
           +    F  + + R   +Q+L
Sbjct: 577 LS---FLRMREWRDTHRQLL 593



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 79/130 (60%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC+RLYSEE ++    ++ PEI R ++ S++L ++ + LGD++KFPF++ P   
Sbjct: 397 GRVAEGVCFRLYSEEDFNGRDPFTDPEILRTNLASVILQMLSLRLGDIQKFPFMQKPDKR 456

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I    + L + GA++++ ++T +GR L+  P+D  L +MLV  +  H +  ML++  AL
Sbjct: 457 YINDGYKLLEELGAVNAQRQMTPIGRTLARFPIDPRLARMLVAAAEGHCLKEMLIIVSAL 516

Query: 928 NFGAIDSKER 937
                D +ER
Sbjct: 517 --AVQDPRER 524



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 17/150 (11%)

Query: 5   LYEEWKLLLRTYLDFKQKEKF--STL--MKIRETQ----------NSLPVAQYKQEIIDT 50
           L  +W+ + +  +  K  EKF  +TL  M+IR  +          ++LPVA   +EI   
Sbjct: 20  LQRQWREIAKGSVAEKDVEKFWRATLRSMEIRAARLQAMPQVRYPDNLPVADKLEEIKKA 79

Query: 51  VLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQ 107
           + + +VVIIAG+TG GK+TQ+P+  +  G      I  TQPRR+A  S++ R+A E   +
Sbjct: 80  ISENQVVIIAGETGSGKTTQLPKICLDLGRGVEGLIGHTQPRRLAARSVANRIAEELGCE 139

Query: 108 YSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
               VGYQ+RF  H  + T +  +T+G+LL
Sbjct: 140 VGKQVGYQVRFTDHTDDSTLVKLMTDGILL 169



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D FL+ YD +++DE HER L+ DFL+G +K LL    ++K+I+ SATI+++ F  +FN  
Sbjct: 175  DRFLNRYDTIIIDEAHERSLNIDFLIGYLKNLLPKRPDLKVIITSATIDLDRFSEHFNGA 234

Query: 1179 AKDLLSGST 1187
                +SG T
Sbjct: 235  PVVEVSGRT 243


>gi|418860377|ref|ZP_13414956.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19470]
 gi|418863207|ref|ZP_13417745.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19536]
 gi|392827105|gb|EJA82823.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19470]
 gi|392833075|gb|EJA88690.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 19536]
          Length = 1281

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 510 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 78/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P
Sbjct: 33  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLP 92

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    T + 
Sbjct: 93  KICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVK 152

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 153 LMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|416509594|ref|ZP_11736725.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. SARB31]
 gi|416525673|ref|ZP_11741794.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. LQC 10]
 gi|416538348|ref|ZP_11749323.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. SARB30]
 gi|416551519|ref|ZP_11756558.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 29N]
 gi|416559121|ref|ZP_11760567.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 42N]
 gi|363550581|gb|EHL34908.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. SARB31]
 gi|363558706|gb|EHL42895.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. LQC 10]
 gi|363561873|gb|EHL45986.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. SARB30]
 gi|363566463|gb|EHL50479.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 29N]
 gi|363576328|gb|EHL60165.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 42N]
          Length = 1300

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|437326278|ref|ZP_20740162.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 17927]
 gi|435192549|gb|ELN77073.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 17927]
          Length = 991

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 461

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 462 IQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 521

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 522 TSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|194471101|ref|ZP_03077085.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205358305|ref|ZP_02655121.2| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194457465|gb|EDX46304.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205335467|gb|EDZ22231.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 1295

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 175 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 234

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 235 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 287

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 288 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 343

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 344 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 403

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 404 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 463

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 464 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 523

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 524 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 582

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 583 YLRVREWQDIYTQLRQVVKELGI 605



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 396 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 455

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 456 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 515

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 516 ITSALSIQ--DPRER 528



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 70  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 129

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 130 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 174



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 175  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 234

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 235  HFNNAPIIEVSGRT 248


>gi|417530743|ref|ZP_12185798.1| ATP-dependent helicase hrpA [Salmonella enterica subsp. enterica
           serovar Urbana str. R8-2977]
 gi|353665907|gb|EHD03884.1| ATP-dependent helicase hrpA [Salmonella enterica subsp. enterica
           serovar Urbana str. R8-2977]
          Length = 903

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 85  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 144

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 145 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 197

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 198 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 253

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 254 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 313

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 314 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 373

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 374 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 433

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 434 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 492

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 493 YLRVREWQDIYTQLRQVVKELGI 515



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 306 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 365

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 366 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 425

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 426 ITSALSIQ--DPRER 438



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 57  VIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVG 113
           +I+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A  +++ R+A E  ++    +G
Sbjct: 1   MIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIG 60

Query: 114 YQIRFEKHRREKTKIVFITEGLLL 137
           Y++RF  H    T +  +T+G+LL
Sbjct: 61  YKVRFSDHVSSNTMVKLMTDGILL 84



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 85   AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 144

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 145  HFNNAPIIEVSGRT 158


>gi|200389537|ref|ZP_03216148.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199601982|gb|EDZ00528.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 1295

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 175 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 234

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 235 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 287

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 288 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 343

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 344 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 403

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 404 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 463

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 464 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 523

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 524 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 582

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 583 YLRVREWQDIYTQLRQVVKELGI 605



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 396 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 455

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 456 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 515

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 516 ITSALSIQ--DPRER 528



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 70  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 129

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 130 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 174



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 175  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 234

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 235  HFNNAPIIEVSGRT 248


>gi|213613138|ref|ZP_03370964.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 834

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 461

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 462 IQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 521

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 522 TSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 78/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P
Sbjct: 52  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLP 111

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    T + 
Sbjct: 112 KICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVK 171

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 172 LMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|417278381|ref|ZP_12065696.1| ATP-dependent helicase HrpA-like protein [Escherichia coli 3.2303]
 gi|419158810|ref|ZP_13703323.1| ATP-dependent helicase HrpA [Escherichia coli DEC6D]
 gi|378010267|gb|EHV73213.1| ATP-dependent helicase HrpA [Escherichia coli DEC6D]
 gi|386238634|gb|EII75569.1| ATP-dependent helicase HrpA-like protein [Escherichia coli 3.2303]
          Length = 667

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|194734661|ref|YP_002114667.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197300726|ref|ZP_02660823.2| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|416511764|ref|ZP_11737438.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. ATCC BAA710]
 gi|194710163|gb|ACF89384.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197290959|gb|EDY30312.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|363570627|gb|EHL54557.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. ATCC BAA710]
          Length = 1306

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 466

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 467 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 ITSALSIQ--DPRER 539



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 81  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 141 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|417662009|ref|ZP_12311590.1| ATP-dependent helicase hrpA [Escherichia coli AA86]
 gi|330911227|gb|EGH39737.1| ATP-dependent helicase hrpA [Escherichia coli AA86]
          Length = 1300

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQQSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQAADEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQQSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|283833017|ref|ZP_06352758.1| ATP-dependent helicase HrpA [Citrobacter youngae ATCC 29220]
 gi|291071632|gb|EFE09741.1| ATP-dependent helicase HrpA [Citrobacter youngae ATCC 29220]
          Length = 1300

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R  +GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESQGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ CK   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCKVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  +  G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMDLGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|452120180|ref|YP_007470428.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Javiana str. CFSAN001992]
 gi|451909184|gb|AGF80990.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Javiana str. CFSAN001992]
          Length = 1281

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 510 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|409250038|ref|YP_006885850.1| ATP-dependent RNA helicase hrpA homolog [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|320085866|emb|CBY95641.1| ATP-dependent RNA helicase hrpA homolog [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 1306

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 466

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 467 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 ITSALSIQ--DPRER 539



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 78/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P
Sbjct: 58  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLP 117

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    T + 
Sbjct: 118 KICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVK 177

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 178 LMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|437962919|ref|ZP_20852493.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. 50-5646]
 gi|435340088|gb|ELP08704.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. 50-5646]
          Length = 977

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|437821039|ref|ZP_20843295.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SARB17]
 gi|435306971|gb|ELO82190.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SARB17]
          Length = 1281

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 510 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 78/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P
Sbjct: 33  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLP 92

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    T + 
Sbjct: 93  KICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVK 152

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 153 LMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|395234934|ref|ZP_10413155.1| ATP-dependent RNA helicase HrpA [Enterobacter sp. Ag1]
 gi|394730635|gb|EJF30484.1| ATP-dependent RNA helicase HrpA [Enterobacter sp. Ag1]
          Length = 1281

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 253/456 (55%), Gaps = 20/456 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE     ++ +D      I   +D+       GD+
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPMVE----DNDDVDRDQLQAIFDAVDE-LGHESSGDI 274

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFMSG  EI     A  + N       +LPL++ LS  EQ+RVF  A  G R+ +++TN
Sbjct: 275 LIFMSGEREIRDTADALTKLNLPHTE--ILPLYARLSNSEQNRVFQ-AHVG-RRIVLATN 330

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 331 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICI 390

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 391 RLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 450

Query: 609 TQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI S E     ++T+ GR LS LPVD  L KM++    F  +  V+ + + LS+Q 
Sbjct: 451 EELGAITSDEDHSVYKLTASGRQLSQLPVDPRLAKMVLEAQKFGCVREVMIITSALSIQD 510

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIEE 720
           P      +    +   +       D L  +N +  +LG ++  + S   ++ CK   +  
Sbjct: 511 PRERPMDKQQASDEKHRRFHDKESDFLAYVNLWN-YLGEQQKALSSNQFRRQCKLDFLNY 569

Query: 721 QRFYEVTKLRSQFKQVLGDSGL-ITDIPGPDASLSS 755
            R  E   + +Q +QV+ + GL +   PG   S+ S
Sbjct: 570 LRVREWQDIYTQLRQVVKELGLPVNSEPGDFRSVHS 605



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI S E     ++T  GR LS LPVD  L KM++    F  +  +++
Sbjct: 442 NIQDGVRLLEELGAITSDEDHSVYKLTASGRQLSQLPVDPRLAKMVLEAQKFGCVREVMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    VGY++RF  H  + T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQTEPGGCVGYKVRFSDHVGDNTMVKLMTDGILL 160



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|418817434|ref|ZP_13372921.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21538]
 gi|418821894|ref|ZP_13377309.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 22425]
 gi|392788423|gb|EJA44952.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21538]
 gi|392788661|gb|EJA45189.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 22425]
          Length = 1281

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 510 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|416651205|ref|ZP_11810970.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|418496175|ref|ZP_13062610.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035318]
 gi|418499458|ref|ZP_13065865.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035320]
 gi|418502708|ref|ZP_13069077.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035321]
 gi|418527466|ref|ZP_13093423.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008286]
 gi|366057422|gb|EHN21724.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035318]
 gi|366070950|gb|EHN35051.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035320]
 gi|366074432|gb|EHN38494.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CT_02035321]
 gi|366828087|gb|EHN54985.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|372204935|gb|EHP18462.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008286]
          Length = 1281

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 510 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|308802111|ref|XP_003078369.1| mRNA splicing factor ATP-dependent RNA helicase (ISS) [Ostreococcus
            tauri]
 gi|116056821|emb|CAL53110.1| mRNA splicing factor ATP-dependent RNA helicase (ISS) [Ostreococcus
            tauri]
          Length = 1262

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 178/497 (35%), Positives = 260/497 (52%), Gaps = 66/497 (13%)

Query: 314  DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
            D  LS    +++DE+HER L  DFLL +++ +L     +K++LMSAT+N   F  YF   
Sbjct: 560  DPLLSDVSHVIVDEVHERSLDSDFLLVLLRDILPHRPTLKVVLMSATLNALAFEDYFKGN 619

Query: 374  AKIIKVPGRLYPIQLEY------------HPIVE-LDRTKSEKLDPGPYIRILSIIDKKY 420
              + ++PG  YP+   Y            +P  E   +    K +  P  R +S  D   
Sbjct: 620  CAVSQIPGFTYPVSEHYLEDILQVTEYQPNPGTEYFKKAPRRKENFDPSTRPVSSKDGNI 679

Query: 421  PRTER--------------------------------------------GDVLIFMSGIS 436
            P  E                                             G +L+FM G++
Sbjct: 680  PDEESFHVALRSKGYGENVVRALRNLEQGLINYELMTKLISHICESMGPGAILVFMPGLA 739

Query: 437  EISSIVRAAQEYNEKSQ----GWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
            EI+ +  A  +    S     G  ++ LHSTLS  EQ  VF +APEG+RK +++TNIAET
Sbjct: 740  EITKLYEACGDNAAVSAATAGGKYLIALHSTLSTAEQGIVFDHAPEGVRKIVIATNIAET 799

Query: 493  SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
            SITID + +VVDSGK KE  YD   +M  L E W+S+ASA QR+GRAGR   G C+R+YS
Sbjct: 800  SITIDDVVYVVDSGKCKENGYDPNTRMQLLLEQWVSRASARQRRGRAGRVQAGRCFRMYS 859

Query: 553  EEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGL-GDVRKF--PFLEAPPAENIESSVRSL 608
               +  + AE++ PEIRRV ++ L L +    + G +  F    LE P  E++E++V +L
Sbjct: 860  RHVHDKVFAEHTLPEIRRVPLEGLCLQIQLQRMAGGIAGFLSKALEPPKVESVETAVAAL 919

Query: 609  TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
             Q GA+D +E +T LG+ L+ LPVD+ +GKML++GSM   +D VL++AAVLS +SPF   
Sbjct: 920  KQLGALDERENLTPLGQHLATLPVDVRVGKMLLYGSMLGCLDPVLTIAAVLSGRSPFVAP 979

Query: 669  AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYE-VT 727
              +  + + A+K    +  D LT+LNAY  W   K+    S+    R      R  E + 
Sbjct: 980  LDKRDEADLAKKLFAEDQSDHLTILNAYNGWQEAKQAGRSSEFTFTRENFLSWRALEGIA 1039

Query: 728  KLRSQFKQVLGDSGLIT 744
             LR+QF Q+L +SG + 
Sbjct: 1040 DLRTQFTQLLNESGFLA 1056



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 79/126 (62%), Gaps = 10/126 (7%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV-------QAGFQRI 83
           +R+ Q  LP    +QE+ID V + +V+I+AG+TGCGK+TQ+PQ+++       +     +
Sbjct: 442 LRQRQR-LPAWAKQQELIDAVERHQVLIVAGETGCGKTTQLPQFILDNAIWQGRGAVTNM 500

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ--DS 141
            CTQPRRI+  S++ RVA E   Q    VGY+IR E      T+I+F T G+LLR+  + 
Sbjct: 501 ICTQPRRISATSVAARVANERGEQLGKTVGYKIRLEGSMSSSTRILFCTTGVLLRRLTED 560

Query: 142 GLITDI 147
            L++D+
Sbjct: 561 PLLSDV 566



 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 4/120 (3%)

Query: 813 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGL-GDVRKF--PFLEAPPAEN 868
           G C+R+YS   +  + AE++ PEIRRV ++ L L +    + G +  F    LE P  E+
Sbjct: 852 GRCFRMYSRHVHDKVFAEHTLPEIRRVPLEGLCLQIQLQRMAGGIAGFLSKALEPPKVES 911

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +E++V +L Q GA+D +E +T LG+ L+ LPVD+ +GKML++GSM   +D +L +   L+
Sbjct: 912 VETAVAALKQLGALDERENLTPLGQHLATLPVDVRVGKMLLYGSMLGCLDPVLTIAAVLS 971



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 4/79 (5%)

Query: 1028 NFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHS 1083
              GA+D +E +T LG+ L+ LPVD+ +GKML++GSM   +D +L +   L+    FV   
Sbjct: 921  QLGALDERENLTPLGQHLATLPVDVRVGKMLLYGSMLGCLDPVLTIAAVLSGRSPFVAPL 980

Query: 1084 EEEEEEEAGERLESMDANE 1102
            ++ +E +  ++L + D ++
Sbjct: 981  DKRDEADLAKKLFAEDQSD 999



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  LS    +++DE+HER L  DFLL +++ +L     +K++LMSAT+N   F  YF
Sbjct: 560  DPLLSDVSHVIVDEVHERSLDSDFLLVLLRDILPHRPTLKVVLMSATLNALAFEDYF 616



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 35/51 (68%)

Query: 978  NFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
              GA+D +E +T LG+ L+ LPVD+ +GKML++GSM   +D +L +   L+
Sbjct: 921  QLGALDERENLTPLGQHLATLPVDVRVGKMLLYGSMLGCLDPVLTIAAVLS 971


>gi|437210917|ref|ZP_20712799.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. 13183-1]
 gi|435203381|gb|ELN87136.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. 13183-1]
          Length = 1076

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 466

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 467 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 ITSALSIQ--DPRER 539



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 81  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 141 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|417510739|ref|ZP_12175556.1| ATP-dependent helicase hrpA [Salmonella enterica subsp. enterica
           serovar Senftenberg str. A4-543]
 gi|353645378|gb|EHC89086.1| ATP-dependent helicase hrpA [Salmonella enterica subsp. enterica
           serovar Senftenberg str. A4-543]
          Length = 977

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 175 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 234

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 235 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 287

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 288 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 343

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 344 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 403

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 404 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 463

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 464 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 523

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 524 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 582

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 583 YLRVREWQDIYTQLRQVVKELGI 605



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 396 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 455

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 456 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 515

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 516 ITSALSIQ--DPRER 528



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 78/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P
Sbjct: 47  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLP 106

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    T + 
Sbjct: 107 KICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVK 166

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 167 LMTDGILL 174



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 175  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 234

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 235  HFNNAPIIEVSGRT 248


>gi|448236106|ref|YP_150508.3| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
          Length = 1306

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 466

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 467 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 ITSALSIQ--DPRER 539



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 77/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P
Sbjct: 58  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLP 117

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+  E  ++    +GY++RF  H    T + 
Sbjct: 118 KICMELGRGIKGLIGHTQPRRLAARTVANRIDEELQTEPGGCIGYKVRFSDHVSSNTMVK 177

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 178 LMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|440762828|ref|ZP_20941878.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Agona str. SH11G1113]
 gi|440767991|ref|ZP_20946966.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Agona str. SH08SF124]
 gi|440774441|ref|ZP_20953329.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Agona str. SH10GFN094]
 gi|436413959|gb|ELP11892.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Agona str. SH10GFN094]
 gi|436419121|gb|ELP17001.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Agona str. SH08SF124]
 gi|436421824|gb|ELP19665.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Agona str. SH11G1113]
          Length = 1281

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 510 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 78/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P
Sbjct: 33  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLP 92

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    T + 
Sbjct: 93  KICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVK 152

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 153 LMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|421358937|ref|ZP_15809234.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 622731-39]
 gi|421364222|ref|ZP_15814455.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 639016-6]
 gi|421368106|ref|ZP_15818299.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 640631]
 gi|421371564|ref|ZP_15821722.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 77-0424]
 gi|421376773|ref|ZP_15826872.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607307-6]
 gi|421381275|ref|ZP_15831330.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 485549-17]
 gi|421387947|ref|ZP_15837946.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 596866-22]
 gi|421390717|ref|ZP_15840692.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 596866-70]
 gi|421394746|ref|ZP_15844685.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 629164-26]
 gi|421400544|ref|ZP_15850430.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 629164-37]
 gi|421403785|ref|ZP_15853629.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 639672-46]
 gi|421406479|ref|ZP_15856293.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 639672-50]
 gi|421413021|ref|ZP_15862775.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 77-1427]
 gi|421416001|ref|ZP_15865722.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 77-2659]
 gi|421422009|ref|ZP_15871677.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 78-1757]
 gi|421426752|ref|ZP_15876380.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 22510-1]
 gi|421435331|ref|ZP_15884868.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648905 5-18]
 gi|421438055|ref|ZP_15887558.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 6-18]
 gi|421444899|ref|ZP_15894329.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 50-3079]
 gi|436740812|ref|ZP_20519702.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SE30663]
 gi|436798962|ref|ZP_20523563.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CHS44]
 gi|436808758|ref|ZP_20528138.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1882]
 gi|436815484|ref|ZP_20533035.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1884]
 gi|436844907|ref|ZP_20538665.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1594]
 gi|436851074|ref|ZP_20541673.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1566]
 gi|436857838|ref|ZP_20546358.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1580]
 gi|436865014|ref|ZP_20550981.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1543]
 gi|436870479|ref|ZP_20554250.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1441]
 gi|436882136|ref|ZP_20561156.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1810]
 gi|436888076|ref|ZP_20564405.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1558]
 gi|436896136|ref|ZP_20568892.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1018]
 gi|436906113|ref|ZP_20574959.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1010]
 gi|436911939|ref|ZP_20577768.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1729]
 gi|436921872|ref|ZP_20584097.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0895]
 gi|436927388|ref|ZP_20587214.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0899]
 gi|436935891|ref|ZP_20591331.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1457]
 gi|436943081|ref|ZP_20596027.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1747]
 gi|436951428|ref|ZP_20600483.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0968]
 gi|436961243|ref|ZP_20604617.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1444]
 gi|436971160|ref|ZP_20609553.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1445]
 gi|436983236|ref|ZP_20613825.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1559]
 gi|436997534|ref|ZP_20619871.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1565]
 gi|437006817|ref|ZP_20622868.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1808]
 gi|437024275|ref|ZP_20629484.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1811]
 gi|437033216|ref|ZP_20632482.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0956]
 gi|437040976|ref|ZP_20635043.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1455]
 gi|437054233|ref|ZP_20643032.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1575]
 gi|437058411|ref|ZP_20645258.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1725]
 gi|437070765|ref|ZP_20651943.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1745]
 gi|437076102|ref|ZP_20654465.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1791]
 gi|437085392|ref|ZP_20659996.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1795]
 gi|437088075|ref|ZP_20661468.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 576709]
 gi|437111935|ref|ZP_20668519.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 635290-58]
 gi|437123513|ref|ZP_20673009.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607308-16]
 gi|437130705|ref|ZP_20676835.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607308-19]
 gi|437140606|ref|ZP_20682605.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607307-2]
 gi|437147997|ref|ZP_20687188.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607308-9]
 gi|437150473|ref|ZP_20688670.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 629163]
 gi|437157621|ref|ZP_20692787.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SE15-1]
 gi|437167077|ref|ZP_20698395.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_N202]
 gi|437179999|ref|ZP_20705767.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_56-3991]
 gi|437257658|ref|ZP_20716058.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_81-2490]
 gi|437267866|ref|ZP_20721499.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SL909]
 gi|437275979|ref|ZP_20726205.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SL913]
 gi|437296267|ref|ZP_20732356.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_69-4941]
 gi|437308116|ref|ZP_20735157.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 638970-15]
 gi|437345878|ref|ZP_20746757.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CHS4]
 gi|437352595|ref|ZP_20747729.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 22558]
 gi|437427277|ref|ZP_20755541.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 543463 22-17]
 gi|437465716|ref|ZP_20764213.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 561362 1-1]
 gi|437477404|ref|ZP_20767164.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 642044 4-1]
 gi|437491246|ref|ZP_20771385.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 642046 4-7]
 gi|437508235|ref|ZP_20776231.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648898 4-5]
 gi|437565118|ref|ZP_20787136.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648900 1-16]
 gi|437570968|ref|ZP_20788386.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 1-17]
 gi|437589732|ref|ZP_20794231.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 39-2]
 gi|437606391|ref|ZP_20799840.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648902 6-8]
 gi|437620544|ref|ZP_20804127.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648903 1-6]
 gi|437650010|ref|ZP_20809646.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648904 3-6]
 gi|437657456|ref|ZP_20811106.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 653049 13-19]
 gi|437690500|ref|ZP_20820311.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 561362 9-7]
 gi|437711529|ref|ZP_20826782.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 543463 42-20]
 gi|437719337|ref|ZP_20828598.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 16-16]
 gi|438095348|ref|ZP_20861977.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 81-2625]
 gi|438097631|ref|ZP_20862455.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 62-1976]
 gi|438112145|ref|ZP_20868742.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 53-407]
 gi|438129071|ref|ZP_20873251.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Pullorum str. ATCC 9120]
 gi|445141722|ref|ZP_21385621.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Dublin str. SL1438]
 gi|445154753|ref|ZP_21392024.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Dublin str. HWS51]
 gi|445172247|ref|ZP_21396404.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SE8a]
 gi|445181716|ref|ZP_21398430.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 20037]
 gi|445226640|ref|ZP_21403963.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SE10]
 gi|445251696|ref|ZP_21408916.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 436]
 gi|445332132|ref|ZP_21414381.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 18569]
 gi|445350627|ref|ZP_21420232.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 13-1]
 gi|445358665|ref|ZP_21422776.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. PT23]
 gi|395984378|gb|EJH93565.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 639016-6]
 gi|395986626|gb|EJH95790.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 640631]
 gi|395987377|gb|EJH96540.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 622731-39]
 gi|396000395|gb|EJI09409.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607307-6]
 gi|396001238|gb|EJI10250.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 485549-17]
 gi|396002860|gb|EJI11849.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 77-0424]
 gi|396008772|gb|EJI17706.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 596866-22]
 gi|396013483|gb|EJI22370.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 629164-26]
 gi|396014527|gb|EJI23413.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 596866-70]
 gi|396023377|gb|EJI32176.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 629164-37]
 gi|396026865|gb|EJI35629.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 639672-46]
 gi|396033651|gb|EJI42357.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 639672-50]
 gi|396040109|gb|EJI48733.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 77-1427]
 gi|396041324|gb|EJI49947.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 78-1757]
 gi|396046105|gb|EJI54694.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 77-2659]
 gi|396054259|gb|EJI62752.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 22510-1]
 gi|396056600|gb|EJI65074.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648905 5-18]
 gi|396067330|gb|EJI75690.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 50-3079]
 gi|396074313|gb|EJI82602.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 6-18]
 gi|434941940|gb|ELL48310.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Pullorum str. ATCC 9120]
 gi|434960267|gb|ELL53665.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CHS44]
 gi|434966575|gb|ELL59410.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1882]
 gi|434973600|gb|ELL65988.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1884]
 gi|434976449|gb|ELL68684.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SE30663]
 gi|434979493|gb|ELL71485.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1594]
 gi|434986376|gb|ELL78027.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1566]
 gi|434989990|gb|ELL81540.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1580]
 gi|434996049|gb|ELL87365.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1543]
 gi|435002220|gb|ELL93301.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1441]
 gi|435003708|gb|ELL94714.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1810]
 gi|435009786|gb|ELM00572.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1558]
 gi|435014690|gb|ELM05247.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1010]
 gi|435016025|gb|ELM06551.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1018]
 gi|435024190|gb|ELM14396.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0895]
 gi|435026184|gb|ELM16315.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1729]
 gi|435037229|gb|ELM27048.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0899]
 gi|435038729|gb|ELM28510.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1457]
 gi|435043280|gb|ELM32997.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1747]
 gi|435050382|gb|ELM39886.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1444]
 gi|435051895|gb|ELM41397.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0968]
 gi|435057449|gb|ELM46818.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1445]
 gi|435061615|gb|ELM50837.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1565]
 gi|435065674|gb|ELM54779.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1559]
 gi|435069733|gb|ELM58732.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1808]
 gi|435074082|gb|ELM62937.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1811]
 gi|435077815|gb|ELM66560.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_0956]
 gi|435086871|gb|ELM75399.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1455]
 gi|435089247|gb|ELM77702.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1575]
 gi|435090736|gb|ELM79138.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1745]
 gi|435094224|gb|ELM82563.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1725]
 gi|435104666|gb|ELM92705.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1795]
 gi|435105399|gb|ELM93436.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CDC_2010K_1791]
 gi|435117446|gb|ELN05157.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 576709]
 gi|435117773|gb|ELN05474.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 635290-58]
 gi|435121324|gb|ELN08869.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607308-16]
 gi|435124679|gb|ELN12135.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607308-19]
 gi|435130121|gb|ELN17379.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607307-2]
 gi|435133453|gb|ELN20620.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 607308-9]
 gi|435145717|gb|ELN32526.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 629163]
 gi|435149766|gb|ELN36460.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_56-3991]
 gi|435151699|gb|ELN38338.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_N202]
 gi|435153660|gb|ELN40259.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SE15-1]
 gi|435167126|gb|ELN53066.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_81-2490]
 gi|435174178|gb|ELN59635.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SL913]
 gi|435175354|gb|ELN60772.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SL909]
 gi|435179658|gb|ELN64799.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CVM_69-4941]
 gi|435185711|gb|ELN70567.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 638970-15]
 gi|435189475|gb|ELN74106.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. CHS4]
 gi|435199698|gb|ELN83754.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 543463 22-17]
 gi|435212542|gb|ELN95518.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 22558]
 gi|435216140|gb|ELN98616.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 561362 1-1]
 gi|435222143|gb|ELO04268.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 642044 4-1]
 gi|435229440|gb|ELO10803.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 642046 4-7]
 gi|435233395|gb|ELO14427.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648898 4-5]
 gi|435236130|gb|ELO16908.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648900 1-16]
 gi|435249045|gb|ELO28891.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 1-17]
 gi|435255705|gb|ELO35066.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648902 6-8]
 gi|435256073|gb|ELO35419.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 39-2]
 gi|435257340|gb|ELO36631.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648903 1-6]
 gi|435268104|gb|ELO46720.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648904 3-6]
 gi|435271361|gb|ELO49828.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 653049 13-19]
 gi|435281541|gb|ELO59206.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 561362 9-7]
 gi|435288195|gb|ELO65246.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 543463 42-20]
 gi|435295208|gb|ELO71728.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 16-16]
 gi|435314124|gb|ELO87584.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 81-2625]
 gi|435326788|gb|ELO98570.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 62-1976]
 gi|435330223|gb|ELP01489.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 53-407]
 gi|444850402|gb|ELX75503.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Dublin str. SL1438]
 gi|444850455|gb|ELX75555.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Dublin str. HWS51]
 gi|444860630|gb|ELX85541.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SE8a]
 gi|444867498|gb|ELX92179.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. SE10]
 gi|444871521|gb|ELX95937.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 20037]
 gi|444874791|gb|ELX99025.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 13-1]
 gi|444876708|gb|ELY00869.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 18569]
 gi|444885820|gb|ELY09593.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. PT23]
 gi|444889619|gb|ELY13038.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 436]
          Length = 1281

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 510 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|419936745|ref|ZP_14453723.1| ATP-dependent RNA helicase HrpA [Escherichia coli 576-1]
 gi|388400229|gb|EIL60983.1| ATP-dependent RNA helicase HrpA [Escherichia coli 576-1]
          Length = 871

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L    Y   +  + ++ P    GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA--YFDAVDELSQESP----GD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 461

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 462 IQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 521

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 522 TSALSIQ--DPRER 533



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|197250749|ref|YP_002146391.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214452|gb|ACH51849.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 1306

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 466

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 467 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 ITSALSIQ--DPRER 539



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 78/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P
Sbjct: 58  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLP 117

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    T + 
Sbjct: 118 KICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVK 177

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 178 LMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|386745397|ref|YP_006218576.1| ATP-dependent RNA helicase HrpA [Providencia stuartii MRSN 2154]
 gi|384482090|gb|AFH95885.1| ATP-dependent RNA helicase HrpA [Providencia stuartii MRSN 2154]
          Length = 1300

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 158/453 (34%), Positives = 248/453 (54%), Gaps = 24/453 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176 AELQNDRLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSR 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRTERG 426
           +FN+ A II+V GR YP+++ Y PI+  D             +I  IID   +  +   G
Sbjct: 236 HFNQ-APIIEVSGRTYPVEVRYRPIMGDDNDSDRD-------QIDGIIDAVNELGQESSG 287

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFMSG  EI     A  +   +     +LPL + LS  EQ+R+FH  P G R+ I++
Sbjct: 288 DILIFMSGEREIRDTADALSKLQLRHTE--ILPLFARLSNSEQNRIFH--PHGGRRIILA 343

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D+G  +   Y V  K+  L    IS+ASA QRKGR GR   G+
Sbjct: 344 TNVAETSLTVPGIKYVIDTGYARISRYSVRTKVQRLPVEPISQASANQRKGRCGRVSDGI 403

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V+
Sbjct: 404 CIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTSIGLGDISAFPFVEAPDKRNIQDGVK 463

Query: 607 SLTQHGAIDSKER------VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            L + GAI + ++      +T +GR L+ LPVD  L +M++       +   + + A LS
Sbjct: 464 LLEELGAIQAHQQSERGYILTDIGRQLAQLPVDPRLARMVIEARKLGAVRETMVIVAALS 523

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  LN + ++L  ++  + +   +K C++  
Sbjct: 524 IQDPRERPLDKQQAADEKHRRFHDKQSDFLAFLNLW-DYLKEQQTALSNAQFRKMCRQDF 582

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
           +   R  E   L +Q +QV+ + G   +    D
Sbjct: 583 LNYLRIREWQDLYTQLRQVVKEQGFPINSAAAD 615



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 8/136 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 397 GRVSDGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTSIGLGDISAFPFVEAPDKR 456

Query: 868 NIESSVRSLTQHGAIDSKER------VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           NI+  V+ L + GAI + ++      +T +GR L+ LPVD  L +M++       +   +
Sbjct: 457 NIQDGVKLLEELGAIQAHQQSERGYILTDIGRQLAQLPVDPRLARMVIEARKLGAVRETM 516

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 517 VIVAALSIQ--DPRER 530



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ I D + + +VVIIAG+TG GK+TQIP+  ++ G      I  TQPRR+A 
Sbjct: 72  NLPVSQKKQAIYDAIKQHQVVIIAGETGSGKTTQIPKICLELGRGVKGLIGHTQPRRLAA 131

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+   +VGY++RF     + T++  +T+G+LL
Sbjct: 132 RAVATRLAQELESEVGTIVGYKVRFSDQVSDSTQVKLMTDGILL 175



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176  AELQNDRLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSR 235

Query: 1174 YFNRIAKDLLSGST 1187
            +FN+     +SG T
Sbjct: 236  HFNQAPIIEVSGRT 249


>gi|379741181|ref|YP_005333150.1| ATP-dependent RNA helicase HrpA [Vibrio cholerae IEC224]
 gi|378794691|gb|AFC58162.1| ATP-dependent RNA helicase HrpA [Vibrio cholerae IEC224]
          Length = 1280

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 254/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 221 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 274

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+ +F   P   R+ +++T
Sbjct: 275 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNNIFQ--PHAGRRIVLAT 330

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 331 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 390

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 391 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 450

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 451 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 510

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S   ++ CK   + 
Sbjct: 511 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 569

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 570 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 599



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 383 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 442

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 443 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 502

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 503 IASALSIQ--DPRER 515



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 58  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 221  HFSNAPIIEVSGRT 234



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 161 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 194


>gi|254286166|ref|ZP_04961126.1| ATP-dependent helicase HrpA [Vibrio cholerae AM-19226]
 gi|150423835|gb|EDN15776.1| ATP-dependent helicase HrpA [Vibrio cholerae AM-19226]
          Length = 1309

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 254/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT +N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTFVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|205360254|ref|ZP_02682133.2| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205350917|gb|EDZ37548.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 1306

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 466

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 467 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 ITSALSIQ--DPRER 539



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 81  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 141 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|436635850|ref|ZP_20515833.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. 22704]
 gi|434958555|gb|ELL52100.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. 22704]
          Length = 1193

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 73  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 132

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 133 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 185

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 186 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 241

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 242 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 301

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 302 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 361

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 362 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 421

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 422 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 480

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 481 YLRVREWQDIYTQLRQVVKELGI 503



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 294 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 353

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 354 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 413

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 414 ITSALSIQ--DPRER 426



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 73   AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 132

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 133  HFNNAPIIEVSGRT 146



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 69  TQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREK 125
           TQ+P+  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    
Sbjct: 1   TQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSN 60

Query: 126 TKIVFITEGLLL 137
           T +  +T+G+LL
Sbjct: 61  TMVKLMTDGILL 72


>gi|422805509|ref|ZP_16853941.1| ATP-dependent helicase HrpA [Escherichia fergusonii B253]
 gi|324113234|gb|EGC07209.1| ATP-dependent helicase HrpA [Escherichia fergusonii B253]
          Length = 1300

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +  V+ + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +  +++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREVMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|204927704|ref|ZP_03218905.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204323046|gb|EDZ08242.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 1306

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 466

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 467 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 ITSALSIQ--DPRER 539



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 81  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 141 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|424660194|ref|ZP_18097441.1| ATP-dependent helicase HrpA [Vibrio cholerae HE-16]
 gi|408050879|gb|EKG86007.1| ATP-dependent helicase HrpA [Vibrio cholerae HE-16]
          Length = 1280

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 221 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 274

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 275 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 330

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 331 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 390

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 391 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 450

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 451 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 510

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 511 DPRERPSDKQQASDEKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 569

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 570 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 599



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 383 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 442

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 443 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 502

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 503 IASALSIQ--DPRER 515



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 58  LPVSQKRDDIAKAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 221  HFSNAPIIEVSGRT 234



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 161 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 194


>gi|420371888|ref|ZP_14872235.1| ATP-dependent helicase HrpA [Shigella flexneri 1235-66]
 gi|391318707|gb|EIQ75808.1| ATP-dependent helicase HrpA [Shigella flexneri 1235-66]
          Length = 1281

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R  +GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESQGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ CK   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCKVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|188026009|ref|ZP_02960542.2| hypothetical protein PROSTU_02494 [Providencia stuartii ATCC 25827]
 gi|188021265|gb|EDU59305.1| ATP-dependent helicase HrpA [Providencia stuartii ATCC 25827]
          Length = 1296

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 157/445 (35%), Positives = 246/445 (55%), Gaps = 24/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 173 AELQNDRLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSR 232

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRTERG 426
           +FN+ A II+V GR YP+++ Y PI+  D             +I  IID   +  +   G
Sbjct: 233 HFNQ-APIIEVSGRTYPVEVRYRPIMGDDNDSDRD-------QIDGIIDAVNELGQESSG 284

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFMSG  EI     A  +   +     +LPL + LS  EQ+R+FH  P G R+ I++
Sbjct: 285 DILIFMSGEREIRDTADALSKLQLRHTE--ILPLFARLSNSEQNRIFH--PHGGRRIILA 340

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D+G  +   Y V  K+  L    IS+ASA QRKGR GR   G+
Sbjct: 341 TNVAETSLTVPGIKYVIDTGYARISRYSVRTKVQRLPVEPISQASANQRKGRCGRVSDGI 400

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V+
Sbjct: 401 CIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTSIGLGDISAFPFVEAPDKRNIQDGVK 460

Query: 607 SLTQHGAIDSKER------VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            L + GAI + ++      +T +GR L+ LPVD  L +M++       +   + + A LS
Sbjct: 461 LLEELGAIQAHQQSERGYILTDIGRQLAQLPVDPRLARMVIEARKLGAVRETMVIVAALS 520

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  LN + ++L  ++  + +   +K C++  
Sbjct: 521 IQDPRERPLDKQQAADEKHRRFHDKQSDFLAFLNLW-DYLKEQQTALSNAQFRKMCRQDF 579

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   L +Q +QV+ + G 
Sbjct: 580 LNYLRIREWQDLYTQLRQVVKEQGF 604



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 8/136 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 394 GRVSDGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTSIGLGDISAFPFVEAPDKR 453

Query: 868 NIESSVRSLTQHGAIDSKER------VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           NI+  V+ L + GAI + ++      +T +GR L+ LPVD  L +M++       +   +
Sbjct: 454 NIQDGVKLLEELGAIQAHQQSERGYILTDIGRQLAQLPVDPRLARMVIEARKLGAVRETM 513

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 514 VIVAALSIQ--DPRER 527



 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ I D + + +VVIIAG+TG GK+TQIP+  ++ G      I  TQPRR+A 
Sbjct: 69  NLPVSQKKQAIYDAIKQHQVVIIAGETGSGKTTQIPKICLELGRGVKGLIGHTQPRRLAA 128

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+   +VGY++RF     + T++  +T+G+LL
Sbjct: 129 RAVATRLAQELESEVGTIVGYKVRFSDQVSDNTQVKLMTDGILL 172



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  +FN+ 
Sbjct: 178  DRLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSRHFNQA 237

Query: 1179 AKDLLSGST 1187
                +SG T
Sbjct: 238  PIIEVSGRT 246


>gi|26108103|gb|AAN80303.1|AE016760_162 ATP-dependent helicase hrpA [Escherichia coli CFT073]
          Length = 1300

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 162/451 (35%), Positives = 249/451 (55%), Gaps = 21/451 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
             R  E   + +Q +QV+ + G+  +I   D
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGIPVNIEPAD 618



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|145630159|ref|ZP_01785941.1| hypothetical protein CGSHi22421_08908 [Haemophilus influenzae
           R3021]
 gi|144984440|gb|EDJ91863.1| hypothetical protein CGSHi22421_08908 [Haemophilus influenzae
           R3021]
          Length = 1303

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 168/495 (33%), Positives = 267/495 (53%), Gaps = 35/495 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE +       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVVEEN-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + GA ++       K  +T +G  L+ LPVD  L KM++    F  +  ++ + + LS+
Sbjct: 473 EELGAFETVQTKSGEKRLLTRVGLQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYK----EWLGVKKDRVRSKKWCKRRG 717
           Q P      +    +   +       D L  LN ++    +   + K++ R +  C++  
Sbjct: 533 QDPRERPQEKQQASDEKHRRFTDKKSDFLAFLNLWRYLQEQQKALSKNQFRRQ--CQKDF 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   +  Q +  + + GL   I    A       AL  G   LL  I  K+AE
Sbjct: 591 LNYLRIREWQDIYHQIRLTVREMGL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE 645

Query: 778 EAPKRRKMLKADNAY 792
               +++ L A NA+
Sbjct: 646 ----KQQYLGARNAH 656



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMTDGILL 185



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L + GA ++       K  +T +G  L+ LPVD  L KM++    F  +  M+
Sbjct: 465 IQDGIKLLEELGAFETVQTKSGEKRLLTRVGLQLAQLPVDPRLAKMILSAVNFGCVYEMM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVSALSIQ--DPRER 538



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 40.8 bits (94), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|262171589|ref|ZP_06039267.1| ATP-dependent helicase HrpA [Vibrio mimicus MB-451]
 gi|261892665|gb|EEY38651.1| ATP-dependent helicase HrpA [Vibrio mimicus MB-451]
          Length = 1309

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 256/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALAKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHTGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N++  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNVQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQASDEKHRRFNHEDSDFLTLVNLW-HYIGEQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           N++  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 472 NVQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAKAIAQHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|416729997|ref|ZP_11848387.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323248912|gb|EGA32837.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
          Length = 1251

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 131 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 190

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 191 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 243

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 244 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 299

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 300 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 359

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 360 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 419

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 420 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 479

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 480 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 538

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 539 YLRVREWQDIYTQLRQVVKELGI 561



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 352 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 411

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 412 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 471

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 472 ITSALSIQ--DPRER 484



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 26  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 85

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 86  ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 130



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 131  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 190

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 191  HFNNAPIIEVSGRT 204


>gi|395229499|ref|ZP_10407810.1| ATP-dependent RNA helicase hrpA [Citrobacter sp. A1]
 gi|394716714|gb|EJF22444.1| ATP-dependent RNA helicase hrpA [Citrobacter sp. A1]
          Length = 1300

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R  +GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESQGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ CK   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCKVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|331646694|ref|ZP_08347797.1| ATP-dependent helicase HrpA [Escherichia coli M605]
 gi|432894232|ref|ZP_20106120.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE165]
 gi|331045446|gb|EGI17573.1| ATP-dependent helicase HrpA [Escherichia coli M605]
 gi|431423066|gb|ELH05195.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE165]
          Length = 1300

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQQSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQAADEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQQSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|440897082|gb|ELR48854.1| Putative ATP-dependent RNA helicase DHX33, partial [Bos grunniens
           mutus]
          Length = 714

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 151/441 (34%), Positives = 249/441 (56%), Gaps = 30/441 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D  L  Y  ++LDE HER LH D L GV+K       E+     K+I+MSAT++++
Sbjct: 185 EAISDCLLRKYSCIILDEAHERTLHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 244

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSIIDKKYPR 422
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+       
Sbjct: 245 LFSQYFNG-APVLYLEGRQHPIQIFY--------TKQPQHD---YLHAALVSVFQIHQEA 292

Query: 423 TERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  AP+
Sbjct: 293 PSSHDILVFLTGQEEIEAMSKTCRDIAKHLPDGCPSMLVLPLYASLPYAQQLRVFQRAPK 352

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
           G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR GR
Sbjct: 353 GYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRTGR 412

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
           AGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  
Sbjct: 413 AGREDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVMLQLLAMKIPNVLTFDFMSKPSP 472

Query: 599 ENIESSVRSLTQHGAI---DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           ++I+ ++  L   GA+   D +  +T +GR ++  P++    K ++    FH  + +L++
Sbjct: 473 DHIQVAIAQLELLGALEHRDGQLTLTPMGRKMAAFPLEPKFAKTILLSPKFHCTEEILTI 532

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKR 715
            A+LSV S   N   R  + ++ RK+  S+ GD LT+LN Y+ +    K+   +K+WCK 
Sbjct: 533 VALLSVDSILYNPPSRRDEVQSVRKKFVSSEGDHLTLLNVYRTF----KNTGGNKEWCKE 588

Query: 716 RGIEEQRFYEVTKLRSQFKQV 736
             +  +    V ++R+Q + +
Sbjct: 589 NFVNSKNMMLVAEVRAQLRDI 609



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 73/112 (65%), Gaps = 3/112 (2%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQ 87
           + + + +LP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQ
Sbjct: 74  VEQQRRNLPIFQARGQLLAQLRNLDSAVLIGETGSGKTTQIPQYLYEGGIGRQAIIAVTQ 133

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           PRR+A ISL+ RV+ E  ++   LVGY +RF+    + TKI F+T+G+LLR+
Sbjct: 134 PRRVAAISLATRVSDEKRTELGKLVGYTVRFDDVTSDDTKIKFLTDGMLLRE 185



 Score = 70.1 bits (170), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 71/127 (55%), Gaps = 3/127 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 415 REDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVMLQLLAMKIPNVLTFDFMSKPSPDH 474

Query: 869 IESSVRSLTQHGAI---DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
           I+ ++  L   GA+   D +  +T +GR ++  P++    K ++    FH  + +L +  
Sbjct: 475 IQVAIAQLELLGALEHRDGQLTLTPMGRKMAAFPLEPKFAKTILLSPKFHCTEEILTIVA 534

Query: 926 ALNFGAI 932
            L+  +I
Sbjct: 535 LLSVDSI 541



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 12/113 (10%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      +E+  E G+      R + + +++ + +   D   ++ A +D  L  Y  +
Sbjct: 139  AISLATRVSDEKRTELGKLVGYTVRFDDVTSDDTKIKFLTDGMLLREAISDCLLRKYSCI 198

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHTYFN 1176
            +LDE HER LH D L GV+K       E     +K+I+MSAT++++LF  YFN
Sbjct: 199  ILDEAHERTLHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFSQYFN 251


>gi|449146222|ref|ZP_21777013.1| ATP-dependent helicase HrpA [Vibrio mimicus CAIM 602]
 gi|449078160|gb|EMB49103.1| ATP-dependent helicase HrpA [Vibrio mimicus CAIM 602]
          Length = 1309

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 155/450 (34%), Positives = 255/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N++  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNVQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT++N +  ++  ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLW-HYIAQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           N++  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S F  +  +++
Sbjct: 472 NVQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKFGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAKAIAQHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 41.2 bits (95), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|437670253|ref|ZP_20815617.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 642044 8-1]
 gi|435281644|gb|ELO59308.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 642044 8-1]
          Length = 1251

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 131 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 190

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 191 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 243

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 244 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 299

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 300 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 359

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 360 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 419

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 420 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 479

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 480 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 538

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 539 YLRVREWQDIYTQLRQVVKELGI 561



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 352 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 411

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 412 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 471

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 472 ITSALSIQ--DPRER 484



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 26  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 85

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 86  ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 130



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 131  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 190

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 191  HFNNAPIIEVSGRT 204


>gi|421351148|ref|ZP_15801513.1| ATP-dependent helicase HrpA [Vibrio cholerae HE-25]
 gi|395951593|gb|EJH62207.1| ATP-dependent helicase HrpA [Vibrio cholerae HE-25]
          Length = 1309

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 254/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT +N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTFVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|417333662|ref|ZP_12117126.1| helicase HrpA [Salmonella enterica subsp. enterica serovar Alachua
           str. R6-377]
 gi|353577705|gb|EHC39786.1| helicase HrpA [Salmonella enterica subsp. enterica serovar Alachua
           str. R6-377]
          Length = 986

 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 170 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 229

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 230 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 282

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 283 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 338

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 339 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 398

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 399 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 458

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 459 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 518

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 519 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 577

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 578 YLRVREWQDIYTQLRQVVKELGI 600



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 391 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 450

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 451 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 510

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 511 ITSALSIQ--DPRER 523



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 65  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 124

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 125 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 169



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 170  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 229

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 230  HFNNAPIIEVSGRT 243


>gi|156974783|ref|YP_001445690.1| ATP-dependent RNA helicase HrpA [Vibrio harveyi ATCC BAA-1116]
 gi|156526377|gb|ABU71463.1| hypothetical protein VIBHAR_02501 [Vibrio harveyi ATCC BAA-1116]
          Length = 1345

 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 148/393 (37%), Positives = 230/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 228 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 287

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 288 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 340

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 341 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHTGRRIVLATN 396

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 397 VAETSLTVPGIKYVIDPGTARLSRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 456

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+E P   NI+  VR L
Sbjct: 457 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEGPDKRNIQDGVRLL 516

Query: 609 TQHGAID-----SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI+     SK+R+TS+GR L+ LP+D  L +M++       +  V+ +AA LS+Q 
Sbjct: 517 EELGAINSDAKESKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMIIAAALSIQD 576

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   K       D LT +N +
Sbjct: 577 PRERPSDKQQSSDDKHKRFFHEESDFLTFVNLW 609



 Score = 97.1 bits (240), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 82/134 (61%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+E P   N
Sbjct: 449 RVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEGPDKRN 508

Query: 869 IESSVRSLTQHGAID-----SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI+     SK+R+T++GR L+ LP+D  L +M++       +  ++++
Sbjct: 509 IQDGVRLLEELGAINSDAKESKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMII 568

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 569 AAALSIQ--DPRER 580



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 125 LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 184

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 185 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 227



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 228  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 287

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 288  HFNNAPIIEVSGRT 301



 Score = 40.4 bits (93), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 228 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 261


>gi|378959704|ref|YP_005217190.1| ATP-dependent RNA helicase hrpA [Salmonella enterica subsp.
           enterica serovar Typhi str. P-stx-12]
 gi|374353576|gb|AEZ45337.1| ATP-dependent RNA helicase hrpA [Salmonella enterica subsp.
           enterica serovar Typhi str. P-stx-12]
          Length = 1306

 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 466

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 467 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 ITSALSIQ--DPRER 539



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 78/128 (60%), Gaps = 10/128 (7%)

Query: 20  KQKEKFSTLMKIRETQ-------NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           K+ E+ +T + +RE          +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P
Sbjct: 58  KEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLP 117

Query: 73  QYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           +  ++ G      I  TQPRR+A  +++ R+A E  ++    +GY++RF  H    T + 
Sbjct: 118 KICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVK 177

Query: 130 FITEGLLL 137
            +T+G+LL
Sbjct: 178 LMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|161486233|ref|NP_753741.2| ATP-dependent RNA helicase HrpA [Escherichia coli CFT073]
          Length = 1281

 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 162/451 (35%), Positives = 249/451 (55%), Gaps = 21/451 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
             R  E   + +Q +QV+ + G+  +I   D
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGIPVNIEPAD 599



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|424729605|ref|ZP_18158205.1| fmn-dependent nadh-azoreductase [Citrobacter sp. L17]
 gi|422895560|gb|EKU35347.1| fmn-dependent nadh-azoreductase [Citrobacter sp. L17]
          Length = 1281

 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R  +GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESQGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ CK   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCKVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|126667411|ref|ZP_01738383.1| ATP-dependent helicase HrpA [Marinobacter sp. ELB17]
 gi|126628167|gb|EAZ98792.1| ATP-dependent helicase HrpA [Marinobacter sp. ELB17]
          Length = 1331

 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 152/361 (42%), Positives = 220/361 (60%), Gaps = 14/361 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            EV  D FL  YD L++DE HER L+ DFLLG +K LL    ++KII+ SATI +  F  
Sbjct: 208 AEVQHDPFLDRYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIELGRFSE 267

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDK--KYPRTERG 426
           +FN  A +I+V GR +P+++ Y P+V  D  + +    G  ++ L  I++  +      G
Sbjct: 268 FFNN-APVIEVSGRTFPVEVRYRPLVGDDDDRDQGWTDG-VLQALEEIEQHERSASQPPG 325

Query: 427 DVLIFMSGISEI---SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKC 483
           DVL+FM G  EI   S+++R A+  + +     VLPL+S LS +EQ+RVF  +  G R+ 
Sbjct: 326 DVLVFMPGEREIRALSNVLRHAELRHTE-----VLPLYSRLSNQEQNRVFQ-SHRG-RRL 378

Query: 484 IVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543
           ++STN+AETS+T+ GIR+V+D+G  +   Y V +K+  L    IS+ASA QR GR GR  
Sbjct: 379 VLSTNVAETSLTVPGIRYVIDTGVARISRYSVRSKIQRLPIEPISQASANQRAGRCGRVA 438

Query: 544 PGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           PG+C+RLY E  +    EY+ PEI R ++ S++L +   GLGD+R FPFLE+P    I  
Sbjct: 439 PGICFRLYDENDFINRPEYTDPEILRTNLASVILQMATSGLGDIRHFPFLESPDNRQIND 498

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
             + L + GA+  K RVT+ GR +S LP+D  L +MLV  +    +  VL + A LSVQ 
Sbjct: 499 GYKLLEELGAVTDKRRVTAAGRTMSRLPLDPRLARMLVTSAEQGSLSEVLIIIAGLSVQD 558

Query: 664 P 664
           P
Sbjct: 559 P 559



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 62/102 (60%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PG+C+RLY E  +    EY+ PEI R ++ S++L +   GLGD+R FPFLE+P   
Sbjct: 435 GRVAPGICFRLYDENDFINRPEYTDPEILRTNLASVILQMATSGLGDIRHFPFLESPDNR 494

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            I    + L + GA+  K RVT  GR +S LP+D  L +MLV
Sbjct: 495 QINDGYKLLEELGAVTDKRRVTAAGRTMSRLPLDPRLARMLV 536



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIAC 93
            LPV++   +I   +   +VVIIAG+TG GK+TQIP+  + AG      I  TQPRRIA 
Sbjct: 104 GLPVSERVDDIAAAIADNQVVIIAGETGSGKTTQIPKICMNAGLGIRGLIGHTQPRRIAA 163

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E   Q    VGYQIRF     E +++  +T+G+LL
Sbjct: 164 RSVAARIAEELGEQTGRQVGYQIRFTDTTSEDSRLKVMTDGILL 207



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +V  D FL  YD L++DE HER L+ DFLLG +K LL    ++KII+ SATI +  F  
Sbjct: 208  AEVQHDPFLDRYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIELGRFSE 267

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 268  FFNNAPVIEVSGRT 281



 Score = 44.3 bits (103), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 192 AYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLY 251
            Y+I   +   E  RL+ M    +   ++HDP         FL  YD LI+DE HER L 
Sbjct: 183 GYQIRFTDTTSEDSRLKVMTDGILLAEVQHDP---------FLDRYDTLIIDEAHERSLN 233

Query: 252 GDFLLGVI 259
            DFLLG +
Sbjct: 234 IDFLLGYL 241


>gi|209695193|ref|YP_002263122.1| ATP-dependent RNA helicase HrpA [Aliivibrio salmonicida LFI1238]
 gi|208009145|emb|CAQ79385.1| ATP-dependent helicase HrpA [Aliivibrio salmonicida LFI1238]
          Length = 1298

 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 252/438 (57%), Gaps = 21/438 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+ +D +L+ YD +++DE HER L+ DF++G ++ LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQSDRYLNQYDTIIIDEAHERSLNIDFIMGYLRELLPKRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR +P++  Y PIVE  D T  ++L+      I   +D+       GD
Sbjct: 240 HFNN-APIIEVSGRTFPVETRYRPIVEDGDDTDRDQLEG-----IFDAVDELCAEG-LGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +L+FM+G  +I     A ++ N +     ++PL++ LS +EQ+RVF       R+ +++T
Sbjct: 293 ILLFMTGERDIRDTAEALEKRNLRDTE--IVPLYARLSSQEQNRVFQ--SHAGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   GVC
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEAISQASANQRKGRCGRVSEGVC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  V+ 
Sbjct: 409 IRLYSEEDFVARPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDNRNIQDGVKL 468

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T +GR L+ LP+D  L +M++     + +  V+ +AA LS+Q
Sbjct: 469 LEELGAINAEISDPKKRLTKVGRELARLPIDPRLARMVLEAPNQNALQEVMIIAAALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   K       D LT +N + +++  ++  + S   +K C++  + 
Sbjct: 529 DPRERPSDKKQASDEKHKRFNHEDSDFLTFVNIW-QYVKEQQKELSSNSFRKQCRKDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVL 737
             R  E   +  Q  QV+
Sbjct: 588 YLRIREWQDVHYQLTQVM 605



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 401 GRVSEGVCIRLYSEEDFVARPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDNR 460

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  V+ L + GAI     D K+R+T +GR L+ LP+D  L +M++     + +  +++
Sbjct: 461 NIQDGVKLLEELGAINAEISDPKKRLTKVGRELARLPIDPRLARMVLEAPNQNALQEVMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 IAAALSIQ--DPRER 533



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 69/103 (66%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K +I + +   +VVI+AG+TG GK+TQ+P+  ++ G   F  I  TQPRR+A  
Sbjct: 77  LPVSQKKDDIAEAIANNQVVIVAGETGSGKTTQLPKICLELGRGKFGNIGHTQPRRLAAR 136

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++  + VGY++RF     E+T++  +T+G+LL
Sbjct: 137 SVADRIAEEMETELGSHVGYKVRFNDKVSERTQVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++ +D +L+ YD +++DE HER L+ DF++G ++ LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQSDRYLNQYDTIIIDEAHERSLNIDFIMGYLRELLPKRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|152978823|ref|YP_001344452.1| ATP-dependent RNA helicase HrpA [Actinobacillus succinogenes 130Z]
 gi|150840546|gb|ABR74517.1| ATP-dependent helicase HrpA [Actinobacillus succinogenes 130Z]
          Length = 1312

 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 172/503 (34%), Positives = 271/503 (53%), Gaps = 43/503 (8%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQTDRFLNQYDCLIIDEAHERSLNNDFILGYLKQLLPRRPDLKVIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+ E   T+ +    G    IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPVAE---TEEQDQLQG----ILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIF+SG  EI     A ++ N +     +LPL++ LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFLSGEREIRDTAEALEKQNLRHTE--ILPLYARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRISEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEEDFNNRPEFTDPEILRTNLASVILQMTSLGLDDIEAFPFVDAPDKRHIQDGVKLL 472

Query: 609 TQHGAI---------DSKE------RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
            + GA          DS+       R+T+ G+ L+ LPVD  L KML+       +  V+
Sbjct: 473 EELGAFEYVQIKSQRDSQNSSRQVRRLTAQGKQLAQLPVDPRLAKMLLSAVNLGCVLEVM 532

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAY----KEWLGVKKDRVRS 709
            + A LS+Q P      +    +   +       D L  LN +    ++   + K++ R 
Sbjct: 533 IIVAALSIQDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWNYVQQQQKALTKNQFRR 592

Query: 710 KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQ 769
           +  C++  +   R  E   +  Q +  + + GL   I    A       AL  G   LL 
Sbjct: 593 Q--CRKDFLNYLRIREWQDIYHQIRLTVREMGL--PINSEAAQYQQIHTALLSG---LLS 645

Query: 770 AIKRKKAEEAPKRRKMLKADNAY 792
            I  K+AE    +++ L A NA+
Sbjct: 646 HIGMKEAE----KQQYLGARNAH 664



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +VV+IAG+TG GK+TQ+P+  ++ G  +   I  TQPRRIA 
Sbjct: 82  SLPVSQRKAEIQKLITENQVVVIAGETGSGKTTQLPKMCLELGLGQTGLIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   +VGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEEMQTELGGIVGYKVRFNDQIGDDTQIKLMTDGILL 185



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 17/144 (11%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RISEGICIRLYSEEDFNNRPEFTDPEILRTNLASVILQMTSLGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAI---------DSKE------RVTTLGRFLSDLPVDIPLGKMLVFGSM 913
           I+  V+ L + GA          DS+       R+T  G+ L+ LPVD  L KML+    
Sbjct: 465 IQDGVKLLEELGAFEYVQIKSQRDSQNSSRQVRRLTAQGKQLAQLPVDPRLAKMLLSAVN 524

Query: 914 FHQIDTMLLLDLALNFGAIDSKER 937
              +  ++++  AL+    D +ER
Sbjct: 525 LGCVLEVMIIVAALSIQ--DPRER 546



 Score = 70.1 bits (170), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQTDRFLNQYDCLIIDEAHERSLNNDFILGYLKQLLPRRPDLKVIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++ TD FL+ YD LI+DE HER L  DF+LG +
Sbjct: 186 AEIQTDRFLNQYDCLIIDEAHERSLNNDFILGYL 219


>gi|432397267|ref|ZP_19640049.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE25]
 gi|432406287|ref|ZP_19649004.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE28]
 gi|432722891|ref|ZP_19957812.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE17]
 gi|432727478|ref|ZP_19962358.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE18]
 gi|432741165|ref|ZP_19975885.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE23]
 gi|432990478|ref|ZP_20179143.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE217]
 gi|433110687|ref|ZP_20296554.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE150]
 gi|430916352|gb|ELC37418.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE25]
 gi|430931072|gb|ELC51538.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE28]
 gi|431266452|gb|ELF57994.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE17]
 gi|431274192|gb|ELF65255.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE18]
 gi|431284674|gb|ELF75525.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE23]
 gi|431495834|gb|ELH75419.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE217]
 gi|431629337|gb|ELI97702.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE150]
          Length = 1300

 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQQSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQQSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|420325175|ref|ZP_14826945.1| ATP-dependent helicase HrpA, partial [Shigella flexneri CCH060]
 gi|391253772|gb|EIQ12939.1| ATP-dependent helicase HrpA, partial [Shigella flexneri CCH060]
          Length = 673

 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 461

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 462 IQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 521

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 522 TSALSIQ--DPRER 533



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|402842169|ref|ZP_10890593.1| ATP-dependent helicase HrpA [Klebsiella sp. OBRC7]
 gi|402280846|gb|EJU29546.1| ATP-dependent helicase HrpA [Klebsiella sp. OBRC7]
          Length = 1300

 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 248/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF  A  G R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ-AHSG-RRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQQAAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQQAAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|78485294|ref|YP_391219.1| ATP-dependent helicase HrpA [Thiomicrospira crunogena XCL-2]
 gi|78363580|gb|ABB41545.1| ATP-dependent helicase HrpA [Thiomicrospira crunogena XCL-2]
          Length = 1342

 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 154/441 (34%), Positives = 249/441 (56%), Gaps = 13/441 (2%)

Query: 276 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHG 335
           L  Y V   D++H++ L      G++        E+  D +L+ YD +++DE HER ++ 
Sbjct: 174 LVGYQVRFHDQVHQQSLLKVMTDGIL------LAEIQNDPYLNQYDTIIIDEAHERSINI 227

Query: 336 DFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVE 395
           DFLLG++K LL    ++K+I+ SATI+ E F ++F   A II+V GR YP+++ Y+P+V+
Sbjct: 228 DFLLGILKKLLPKRRDLKLIITSATIDTERFASFFEG-APIIEVSGRTYPVEVRYNPLVK 286

Query: 396 LDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGW 455
           ++  +  + +      I+  +++       GDVL+F  G  +I       ++ N K+   
Sbjct: 287 IEDDEGNEFEQDIPTAIVYALEELSEIDPFGDVLVFQVGERDIKETAEVLRKQNLKNTE- 345

Query: 456 IVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDV 515
            ++PL++ LS+ EQ++VF  + +  R+ I+STN+AETS+T+ GI+FV+D G V+   Y V
Sbjct: 346 -IVPLYARLSMAEQNKVFQTSQK--RRVILSTNVAETSLTVPGIKFVIDPGLVRISRYSV 402

Query: 516 TAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSL 575
            +K+  L    IS+ASA QR GR GR   GVC RLY E+ +    E++ PEI R S+ ++
Sbjct: 403 RSKVQRLPIEKISQASANQRAGRCGRVSSGVCIRLYDEDDFKSRPEFTPPEIHRTSLATV 462

Query: 576 LLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIP 635
           +L +  M LG V+ FPF+E P  + I    R L + GA+D K R+T  GR L+ LP+D  
Sbjct: 463 ILQMTQMKLGSVKHFPFIEPPEDKAINDGFRQLHEIGALDEKRRLTESGRHLAKLPLDPR 522

Query: 636 LGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNA 695
           + KM++ G     +  VL +AA +S+Q P             A K  E    D L  LN 
Sbjct: 523 MAKMVLEGQKNGVLAEVLIIAAAISIQDPRDMNESNRQAANQAHKVFEDPRSDFLFFLNL 582

Query: 696 YKEWLGVKKDRVRSK--KWCK 714
           ++ +   ++   ++K  K CK
Sbjct: 583 WRFYEDKRRHLSQNKLRKLCK 603



 Score =  100 bits (249), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 75/107 (70%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRR 90
           T ++LPVA+ + EI++ +   +VV+IAG+TG GK+TQIP+  ++AG   F RI CTQPRR
Sbjct: 94  TYDNLPVAERRDEILELIQNNQVVVIAGETGSGKTTQIPKICLEAGRGVFGRIGCTQPRR 153

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  S+++R+A E  S    LVGYQ+RF     +++ +  +T+G+LL
Sbjct: 154 LAARSVAERIAEELGSSLGQLVGYQVRFHDQVHQQSLLKVMTDGILL 200



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 70/120 (58%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   GVC RLY E+ +    E++ PEI R S+ +++L +  M LG V+ FPF+E P  + 
Sbjct: 428 RVSSGVCIRLYDEDDFKSRPEFTPPEIHRTSLATVILQMTQMKLGSVKHFPFIEPPEDKA 487

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           I    R L + GA+D K R+T  GR L+ LP+D  + KM++ G     +  +L++  A++
Sbjct: 488 INDGFRQLHEIGALDEKRRLTESGRHLAKLPLDPRMAKMVLEGQKNGVLAEVLIIAAAIS 547



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD +++DE HER ++ DFLLG++K LL    ++K+I+ SATI+ E F +
Sbjct: 201  AEIQNDPYLNQYDTIIIDEAHERSINIDFLLGILKKLLPKRRDLKLIITSATIDTERFAS 260

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 261  FFEGAPIIEVSGRT 274



 Score = 40.8 bits (94), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 24/34 (70%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D +L+ YD +I+DE HER +  DFLLG++
Sbjct: 201 AEIQNDPYLNQYDTIIIDEAHERSINIDFLLGIL 234


>gi|254384055|ref|ZP_04999400.1| ATP-dependent helicase [Streptomyces sp. Mg1]
 gi|194342945|gb|EDX23911.1| ATP-dependent helicase [Streptomyces sp. Mg1]
          Length = 1313

 Score =  261 bits (668), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 158/442 (35%), Positives = 243/442 (54%), Gaps = 12/442 (2%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+I+ SATI+ E F  
Sbjct: 177 AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLATLLPKRPDLKVIVTSATIDPERFSR 236

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A I++V GR YP+++ Y P++E D  ++   D      I   +D+       GDV
Sbjct: 237 HFGE-APIVEVSGRTYPVEVRYRPLLEEDAEEAADSDRDQITAICEAVDELQGEGP-GDV 294

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL-RKCIVST 487
           L+F+SG  EI     A  + N +     VLPL++ LS  EQ RVF   P G  R+ +++T
Sbjct: 295 LVFLSGEREIRDTADALNKRNLRFTE--VLPLYARLSHAEQHRVFQRPPAGTTRRIVLAT 352

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 353 NVAETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGIC 412

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++  EI R ++ S++L +   GLG++ KFPF++ P   NI   V+ 
Sbjct: 413 IRLYSEDDFLSRPEFTDAEILRTNLASVILQMTAAGLGEIEKFPFIDPPDHRNIRDGVQL 472

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GA+D  E     R+T +GR LS LPVD  L +M+V     + +  V+ +AA LS+Q
Sbjct: 473 LQELGALDPSEKDAHKRLTPMGRQLSQLPVDPRLARMVVEADKNNCVREVMVIAAALSIQ 532

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEE 720
            P    + +    +      +    D L+ LN ++     +K+R  S  ++ CK+  +  
Sbjct: 533 DPRERPSDKQTQADQNHARFKDETSDFLSFLNMWRYVREQQKERGSSSFRRMCKQEYLNF 592

Query: 721 QRFYEVTKLRSQFKQVLGDSGL 742
            R  E   + SQ + V    G+
Sbjct: 593 LRIREWQDIYSQLRTVAKSMGI 614



 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  G+C RLYSE+ +    E++  EI R ++ S++L +   GLG++ KFPF++ P   N
Sbjct: 406 RTSDGICIRLYSEDDFLSRPEFTDAEILRTNLASVILQMTAAGLGEIEKFPFIDPPDHRN 465

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I   V+ L + GA+D  E     R+T +GR LS LPVD  L +M+V     + +  ++++
Sbjct: 466 IRDGVQLLQELGALDPSEKDAHKRLTPMGRQLSQLPVDPRLARMVVEADKNNCVREVMVI 525

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 526 AAALSIQ--DPRER 537



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 70/105 (66%), Gaps = 4/105 (3%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
           +LPV+Q K EI + +   +VVI+AG+TG GK+TQIP+  ++ G      I  TQPRRIA 
Sbjct: 72  NLPVSQKKDEIAEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGMIGHTQPRRIAA 131

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLL 137
            ++++R+A E  S+    VG+++RF ++  ++ T +  +T+G+LL
Sbjct: 132 RTVAERIAEELKSEIGQTVGWKVRFTDQVDQDATFVKLMTDGILL 176



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+I+ SATI+ E F  
Sbjct: 177  AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLATLLPKRPDLKVIVTSATIDPERFSR 236

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 237  HFGEAPIVEVSGRT 250


>gi|432801646|ref|ZP_20035628.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE84]
 gi|431349759|gb|ELG36588.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE84]
          Length = 1300

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE +D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEVDDTERDQLQA-----IFDAVDE-LSQESSGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|343508463|ref|ZP_08745805.1| ATP-dependent RNA helicase HrpA [Vibrio ichthyoenteri ATCC 700023]
 gi|342793777|gb|EGU29565.1| ATP-dependent RNA helicase HrpA [Vibrio ichthyoenteri ATCC 700023]
          Length = 1278

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 145/393 (36%), Positives = 230/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF++G +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFIMGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+   Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 221 HFNN-APIIEVSGRTYPVDTRYRPLNGDDDVDRDQLE-GIFEAVDELCDEGL-----GDI 273

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 274 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSASEQNKIFQ--PHAGRRIVLATN 329

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 330 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 389

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N++  VR L
Sbjct: 390 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNVQDGVRLL 449

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D+K+R+T+ GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 450 EELGAINGDVKDAKKRLTNTGRQLARLPIDPRLARMVLEAPKYGALKEVMIVAAALSIQD 509

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT +N +
Sbjct: 510 PRERPSDKKQSSDDKHRRFFHEESDFLTFVNLW 542



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 381 GRVEEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 440

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           N++  VR L + GAI     D+K+R+T  GR L+ LP+D  L +M++    +  +  +++
Sbjct: 441 NVQDGVRLLEELGAINGDVKDAKKRLTNTGRQLARLPIDPRLARMVLEAPKYGALKEVMI 500

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 501 VAAALSIQ--DPRER 513



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K++I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 58  LPVSQKKEDIAKAIAENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  +Q    VGY++RF     + T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMQTQLGEFVGYKVRFNDQISDNTQIKLMTDGILL 160



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF++G +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRFLNQYDTIIIDEAHERSLNIDFIMGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|437764834|ref|ZP_20835051.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. 76-2651]
 gi|435308145|gb|ELO83148.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Enteritidis str. 76-2651]
          Length = 738

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 89  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 148

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 149 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 201

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 202 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 257

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 258 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 317

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 318 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 377

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 378 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 437

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 438 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 496

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 497 YLRVREWQDIYTQLRQVVKELGI 519



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 311 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 370

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 371 IQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 430

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 431 TSALSIQ--DPRER 442



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 3/86 (3%)

Query: 55  RVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNL 111
           +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A  +++ R+A E  ++    
Sbjct: 3   QVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGC 62

Query: 112 VGYQIRFEKHRREKTKIVFITEGLLL 137
           +GY++RF  H    T +  +T+G+LL
Sbjct: 63  IGYKVRFSDHVSSNTMVKLMTDGILL 88



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 89   AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 148

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 149  HFNNAPIIEVSGRT 162


>gi|296414015|ref|XP_002836700.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630535|emb|CAZ80891.1| unnamed protein product [Tuber melanosporum]
          Length = 676

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 157/434 (36%), Positives = 241/434 (55%), Gaps = 22/434 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           EV  D  L  Y V++LDE HER +  D L G++K  L   A++K+I+ SAT++ E F  Y
Sbjct: 126 EVLLDPDLRRYSVIILDEAHERTIATDVLFGLLKKTLKRRADLKLIVTSATLDAEKFSNY 185

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           FN+   I  +PGR YP+++ Y         +S+ LD    I ++ I   + P    GD+L
Sbjct: 186 FNQ-CPIFTIPGRTYPVEILY-----TKEPESDYLDAA-LITVMQIHLSEPP----GDIL 234

Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           +F++G  EI +      E   K+ G      I+LP++S L  E Q ++F  AP G RK +
Sbjct: 235 LFLTGQEEIDTSCEILYE-RMKALGPSVPELIILPVYSALPSEMQSKIFEPAPPGCRKVV 293

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TNIAETSITID I +V+D G VK+ ++D    M +L    IS+A A+QR GRAGRTGP
Sbjct: 294 IATNIAETSITIDQIYYVIDPGFVKQNAFDPKLGMDSLVVTPISQAQAKQRAGRAGRTGP 353

Query: 545 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           G CYRLY+E  + S +   S PEI+R ++   +L L  MG+ D+  F F++ PP   + +
Sbjct: 354 GKCYRLYTEAAFQSEMLPTSIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLT 413

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
           ++  L    A+D +  +T LGR ++D P++  L K+L+        D +LS+ A+LSVQ+
Sbjct: 414 ALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVDIGCSDEILSIVAMLSVQT 473

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
            F     +    +  + +    HGD LT+LN Y  W    K+   S  WC    I+ +  
Sbjct: 474 VFYRPKEKQNQADQKKAKFHDPHGDHLTLLNVYNAW----KNSAFSNPWCFDNFIQARSM 529

Query: 724 YEVTKLRSQFKQVL 737
                +R+Q + ++
Sbjct: 530 KRAKDVRAQLEMIM 543



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 74/112 (66%), Gaps = 3/112 (2%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQ 87
           I+E + SLPV + +  +I  V   +++I+ GDTG GK+TQ+ Q+L +AGF     I CTQ
Sbjct: 15  IKEQRESLPVFKLRSSLIKAVQGNQLLIVVGDTGSGKTTQMTQFLAEAGFADNGMIGCTQ 74

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           PRR+A +S++KRVA E   +    VGY IRFE     +TKI ++T+G+L R+
Sbjct: 75  PRRVAAMSVAKRVAEEVGCRVGQEVGYTIRFEDCTGPETKIKYMTDGMLQRE 126



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG CYRLY+E  + S +   S PEI+R ++   +L L  MG+ D+  F F++ PP 
Sbjct: 349 GRTGPGKCYRLYTEAAFQSEMLPTSIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPT 408

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
             + +++  L    A+D +  +T LGR ++D P++  L K+L+
Sbjct: 409 NTMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLI 451



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPK---QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            +E G  +   D    E ++K+      Q +V  D  L  Y V++LDE HER +  D L G
Sbjct: 97   QEVGYTIRFEDCTGPETKIKYMTDGMLQREVLLDPDLRRYSVIILDEAHERTIATDVLFG 156

Query: 1146 VIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGST 1187
            ++K  L   A++K+I+ SAT++ E F  YFN+     + G T
Sbjct: 157  LLKKTLKRRADLKLIVTSATLDAEKFSNYFNQCPIFTIPGRT 198


>gi|449053123|ref|ZP_21732464.1| ATP-dependent RNA helicase HrpA, partial [Klebsiella pneumoniae
           hvKP1]
 gi|448875745|gb|EMB10753.1| ATP-dependent RNA helicase HrpA, partial [Klebsiella pneumoniae
           hvKP1]
          Length = 816

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +  + T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 461

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 462 IQDGVRLLEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 521

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 522 TSALSIQ--DPRER 533



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|421450384|ref|ZP_15899759.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 58-6482]
 gi|396066632|gb|EJI74993.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 58-6482]
          Length = 1281

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITADEQQTAYKLMPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 510 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKERVTT-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E+ T      LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITADEQQTAYKLMPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|300819708|ref|ZP_07099898.1| ATP-dependent helicase HrpA [Escherichia coli MS 107-1]
 gi|415879405|ref|ZP_11544730.1| ATP-dependent helicase HrpA [Escherichia coli MS 79-10]
 gi|432805478|ref|ZP_20039418.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE91]
 gi|432933966|ref|ZP_20133583.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE184]
 gi|433193388|ref|ZP_20377395.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE90]
 gi|300527728|gb|EFK48790.1| ATP-dependent helicase HrpA [Escherichia coli MS 107-1]
 gi|342926827|gb|EGU95549.1| ATP-dependent helicase HrpA [Escherichia coli MS 79-10]
 gi|431355844|gb|ELG42539.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE91]
 gi|431454438|gb|ELH34815.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE184]
 gi|431718861|gb|ELJ82931.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE90]
          Length = 1300

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T+LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTALGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTALGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|455646676|gb|EMF25703.1| ATP-dependent RNA helicase HrpA [Citrobacter freundii GTC 09479]
          Length = 1281

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R  +GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESQGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQAKAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ CK   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCKVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQAKAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|336250564|ref|YP_004594274.1| ATP-dependent RNA helicase HrpA [Enterobacter aerogenes KCTC 2190]
 gi|334736620|gb|AEG98995.1| ATP-dependent RNA helicase HrpA [Enterobacter aerogenes KCTC 2190]
          Length = 1281

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D ++ ++L       I   +D+   R   GD
Sbjct: 221 HFNH-APIIEVSGRTYPVEVRYRPIVEEADDSERDQLQA-----IFDAVDE-LGRESTGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTAEALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGL 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNHAPIIEVSGRT 234


>gi|331677259|ref|ZP_08377941.1| ATP-dependent helicase HrpA [Escherichia coli H591]
 gi|331075110|gb|EGI46423.1| ATP-dependent helicase HrpA [Escherichia coli H591]
          Length = 667

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 461

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 462 IQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 521

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 522 TSALSIQ--DPRER 533



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432485089|ref|ZP_19727006.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE212]
 gi|433173212|ref|ZP_20357756.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE232]
 gi|431016642|gb|ELD30163.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE212]
 gi|431694717|gb|ELJ60067.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE232]
          Length = 1300

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDTVDE-LSQESHGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|397657780|ref|YP_006498482.1| ATP-dependent helicase hrpA [Klebsiella oxytoca E718]
 gi|394346182|gb|AFN32303.1| ATP-dependent helicase hrpA [Klebsiella oxytoca E718]
          Length = 1300

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 248/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF  A  G R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ-AHSG-RRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|118100106|ref|XP_001233396.1| PREDICTED: putative ATP-dependent RNA helicase DHX33 [Gallus
           gallus]
          Length = 657

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 159/474 (33%), Positives = 263/474 (55%), Gaps = 44/474 (9%)

Query: 279 YDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFL 338
           +D L  DE   + L    LL           E   D  L  Y V++LDE HER +H D L
Sbjct: 107 FDDLTSDETRIKFLTDGMLLR----------EAIGDPILRKYSVVILDEAHERTIHTDVL 156

Query: 339 LGVIKCLLHSTAEV-----KIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPI 393
            GV+K       E+     K+I+MSAT++++ F  YFN  A ++ + GR +PIQ+ Y   
Sbjct: 157 FGVVKAAQKKRKELGKLPLKVIVMSATMDVDQFSQYFNG-APVLYLEGRQHPIQVFY--- 212

Query: 394 VELDRTKSEKLDPGPYIR--ILSI--IDKKYPRTERGDVLIFMSGISEISSIVRA----A 445
                TK  + D   Y++  ++S+  I ++ P ++  D+L+F++G  EI ++ +     A
Sbjct: 213 -----TKQPQSD---YLQAALVSVFQIHQEAPSSQ--DILVFLTGQEEIEAMTKTCRDIA 262

Query: 446 QEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDS 505
           +   +      V+PL+++L   +Q RVF  AP+G RK I+STNIAETSITI GI++VVD+
Sbjct: 263 KHLPDGCPQMTVMPLYASLPYSQQLRVFQAAPKGCRKVILSTNIAETSITISGIKYVVDT 322

Query: 506 GKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTP 565
           G VK   Y+    +  L    +SKA A QR GRAGR   G+CYRLY+E+++    + + P
Sbjct: 323 GMVKAKKYNPEIGLEVLAVQRVSKAQAWQRTGRAGREDSGICYRLYTEDEFEKFDKMTVP 382

Query: 566 EIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKER---VTS 622
           EI+R ++ S+LL L+ + + ++  F F+  P  + I++++  L   GA++ KE    +T 
Sbjct: 383 EIQRCNLASVLLQLLALRIPNILTFDFMSKPSPDAIQAAIEQLDLLGAVEQKEDQLVLTP 442

Query: 623 LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKEL 682
           LGR ++  P++    K ++    FH  + +L++ ++LSV S   N   R  + ++ RK+ 
Sbjct: 443 LGRKMAAFPLEPKFSKTILLSPKFHCTEEILTIVSLLSVDSVLYNPPARRDEVQSVRKKF 502

Query: 683 ESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQV 736
            S+ GD LT+LN Y+ +  V  +    K+WCK   +  +    V+ +R+Q + +
Sbjct: 503 ISSEGDHLTLLNVYRAFKNVSGN----KEWCKENFVNGRNMMLVSDVRAQLRDI 552



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LP+ Q +  ++  +      ++ G+TG GK+TQIPQYL +AG  R   IA TQPRR+A I
Sbjct: 24  LPIFQARGPLLSQLRGLECAVLIGETGSGKTTQIPQYLYEAGIGRQGIIAVTQPRRVAAI 83

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
           SL+ RV+ E  ++   LVGY +RF+    ++T+I F+T+G+LLR+  G
Sbjct: 84  SLATRVSDEKRTELGKLVGYTVRFDDLTSDETRIKFLTDGMLLREAIG 131



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S+LL L+ + + ++  F F+  P  + 
Sbjct: 358 REDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVLLQLLALRIPNILTFDFMSKPSPDA 417

Query: 869 IESSVRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ KE    +T LGR ++  P++    K ++    FH  + +L +
Sbjct: 418 IQAAIEQLDLLGAVEQKEDQLVLTPLGRKMAAFPLEPKFSKTILLSPKFHCTEEILTI 475



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 12/113 (10%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      +E+  E G+      R + + ++E   +   D   ++ A  D  L  Y V+
Sbjct: 82   AISLATRVSDEKRTELGKLVGYTVRFDDLTSDETRIKFLTDGMLLREAIGDPILRKYSVV 141

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHTYFN 1176
            +LDE HER +H D L GV+K       E     +K+I+MSAT++++ F  YFN
Sbjct: 142  ILDEAHERTIHTDVLFGVVKAAQKKRKELGKLPLKVIVMSATMDVDQFSQYFN 194


>gi|432480786|ref|ZP_19722745.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE210]
 gi|431008660|gb|ELD23460.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE210]
          Length = 1300

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T+LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTALGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTALGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|445138180|ref|ZP_21383967.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9184]
 gi|444843518|gb|ELX68772.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9184]
          Length = 1281

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-ALIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 510 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 160



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNALIIEVSGRT 234


>gi|297520349|ref|ZP_06938735.1| ATP-dependent RNA helicase HrpA [Escherichia coli OP50]
          Length = 637

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 151 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 210

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 211 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 263

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 264 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQS--HSGRRIVLAT 319

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 320 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 379

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 380 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 439

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 440 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 499

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 500 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 558

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 559 YLRVREWQDIYTQLRQVVKELGI 581



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 372 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 431

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 432 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 491

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 492 ITSALSIQ--DPRER 504



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 46  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 105

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 106 ARTVANRIAEELKTEPGGCIGYKVRFSNHVSDNTMVKLMTDGILL 150



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 151  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 210

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 211  HFNNAPIIEVSGRT 224


>gi|205352675|ref|YP_002226476.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|375123492|ref|ZP_09768656.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. SG9]
 gi|205272456|emb|CAR37345.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627742|gb|EGE34085.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. SG9]
          Length = 1300

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-ALIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNALIIEVSGRT 253


>gi|341877647|gb|EGT33582.1| CBN-MOG-1 protein [Caenorhabditis brenneri]
          Length = 1140

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 152/434 (35%), Positives = 248/434 (57%), Gaps = 18/434 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L  Y  +++DE HER L+ D L G+++ ++   A++K+I+ SAT++ + F  +
Sbjct: 554 ECLGDGTLDQYSAIIMDEAHERSLNTDVLFGLLREVVAKRADLKLIVTSATMDADKFADF 613

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F        +PGR +P++L +H      RT  E        + ++I    +     GD+L
Sbjct: 614 FGGNCPTFTIPGRTFPVEL-FHA-----RTPVEDYVDAAVKQAVTI----HLGGMDGDIL 663

Query: 430 IFMSGISEISSIVRAAQEYN---EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           IFM G  +I       +E     +++    VLP++S L  + Q ++F  AP G+RK IV+
Sbjct: 664 IFMPGQEDIECTCEMIKEKLGELDEAPPLAVLPIYSQLPSDLQAKIFQRAPGGMRKAIVA 723

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TNIAETS+T+DGI FV+D G  K   Y+    M  L  F +S+ASA QR GRAGRTGPG 
Sbjct: 724 TNIAETSLTVDGILFVIDPGFCKMKVYNPRIGMDALSIFPVSQASANQRTGRAGRTGPGQ 783

Query: 547 CYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           CYRLY+E Q+   L   + PEI+R ++ +++L L  +G+ D+ KF F++APP +N+ +S+
Sbjct: 784 CYRLYTERQFKDELLRSTVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQDNMLNSM 843

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
             L   GA+D+  ++TS+GR + + P+D  L KML+  +     D VL++ ++LSV + F
Sbjct: 844 YQLWTLGALDNTGQLTSMGRKMVEFPLDPTLSKMLIVSAEMGCSDEVLTIVSMLSVPAIF 903

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYE 725
                R+ + ++ +++ +    D LT LN Y +W   K     S KWC    +  +   +
Sbjct: 904 FRPKGREEEADSKKEKFQVPESDHLTFLNVYLQWRKHKY----SAKWCADNYLHVKALKK 959

Query: 726 VTKLRSQFKQVLGD 739
           V ++R+Q K+++ D
Sbjct: 960 VREVRAQLKEIMQD 973



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 86/138 (62%), Gaps = 16/138 (11%)

Query: 18  DFKQKEKFSTLMK-------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTG 64
           ++K+  +F++ MK             I++ +  LPV   +Q++++ + +  VVII G+TG
Sbjct: 417 NYKESHQFASHMKDNEAVSDFAMEKTIKQQREYLPVFACRQKMMNVIRENNVVIIVGETG 476

Query: 65  CGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKH 121
            GK+TQ+ QYL++ GF     I CTQPRR+A +S+++RVA E   +    VGY IRFE  
Sbjct: 477 SGKTTQLAQYLLEDGFGESGLIGCTQPRRVAAMSVARRVADEMGVELGQDVGYAIRFEDC 536

Query: 122 RREKTKIVFITEGLLLRQ 139
             EKT I ++T+G+LLR+
Sbjct: 537 TSEKTIIKYMTDGILLRE 554



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 79/125 (63%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E Q+   L   + PEI+R ++ +++L L  +G+ D+ KF F++APP +
Sbjct: 778 RTGPGQCYRLYTERQFKDELLRSTVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQD 837

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           N+ +S+  L   GA+D+  ++T++GR + + P+D  L KML+  +     D +L +   L
Sbjct: 838 NMLNSMYQLWTLGALDNTGQLTSMGRKMVEFPLDPTLSKMLIVSAEMGCSDEVLTIVSML 897

Query: 928 NFGAI 932
           +  AI
Sbjct: 898 SVPAI 902



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 37/58 (63%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
             D  L  Y  +++DE HER L+ D L G+++ ++   A++K+I+ SAT++ + F  +F
Sbjct: 557  GDGTLDQYSAIIMDEAHERSLNTDVLFGLLREVVAKRADLKLIVTSATMDADKFADFF 614


>gi|289661990|ref|ZP_06483571.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB 702]
          Length = 1373

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 249/445 (55%), Gaps = 34/445 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LSSYD +++DE HER L+ DFLLG +K LLH   ++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRPDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGP--------YIRILSIIDKKY 420
           +F+  A +I V GR +P+++ Y P+ E D   ++  + G            I++ ID+  
Sbjct: 240 HFDN-APVISVEGRTFPVEVRYRPL-EGDVGDTDDGEHGSGRDGERSVNDAIVAAIDEIT 297

Query: 421 PRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QDRVF+  P 
Sbjct: 298 RIDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDRVFNPGPR 353

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
             R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR GR
Sbjct: 354 --RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMGR 411

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
            GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP  
Sbjct: 412 CGRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDE 471

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
             +    + L + GAID++ R+T+ GR ++ LPVD+ L +MLV       +  ++ +AA 
Sbjct: 472 RAVADGWQQLLELGAIDAERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAF 531

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDRVRSK- 710
           L +Q P      R P+   A     +   D        L + +AY++   V +D  +SK 
Sbjct: 532 LGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDLTQSKL 584

Query: 711 -KWCKRRGIEEQRFYEVTKLRSQFK 734
             WC R  +   R  E  +L  Q +
Sbjct: 585 RDWCNRHFLGFLRMREWRELHRQLR 609



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 413 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 472

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 473 AVADGWQQLLELGAIDAERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 530

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 531 FLGIQDPRER 540



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           N LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  NQLPIAREAERIIALIRGHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E      + VG+Q+RF     E+++I F+T+G+LL
Sbjct: 135 ARAVAARVAEELKRPLGSTVGFQVRFTDRVSEQSQIKFMTDGILL 179



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 47/63 (74%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LSSYD +++DE HER L+ DFLLG +K LLH   ++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRPDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 47.8 bits (112), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 28/39 (71%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++A+D +LSSYD +I+DE HER L  DFLLG +   LH
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLH 218



 Score = 43.9 bits (102), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 482  LELGAIDAERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAAFLGIQDPRE 539

Query: 1037 R 1037
            R
Sbjct: 540  R 540



 Score = 41.6 bits (96), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M+++
Sbjct: 482  LELGAIDAERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 528


>gi|422014353|ref|ZP_16360966.1| ATP-dependent helicase [Providencia burhodogranariea DSM 19968]
 gi|414101106|gb|EKT62708.1| ATP-dependent helicase [Providencia burhodogranariea DSM 19968]
          Length = 1296

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 157/445 (35%), Positives = 244/445 (54%), Gaps = 24/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 173 AELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLIKRPDLKVIITSATIDPERFSR 232

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRTERG 426
           +FN  A I++V GR YP+++ Y PI+ +D             +I  IID   +     +G
Sbjct: 233 HFNH-APIVEVSGRTYPVEVRYRPIIGVDNDSDRD-------QIDGIIDAVNELGHESQG 284

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFMSG  EI     A  +   +     +LPL + LS  EQ+R+FH  P G R+ I++
Sbjct: 285 DILIFMSGEREIRDTADALSKLQLRHTE--ILPLFARLSNSEQNRIFH--PHGGRRIILA 340

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D+G  +   Y    K+  L    IS+ASA QRKGR GR   G+
Sbjct: 341 TNVAETSLTVPGIKYVIDTGYARISRYSFRTKVQRLPVEAISQASANQRKGRCGRVSDGI 400

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V+
Sbjct: 401 CIRLYSEEDFLGRPEFTDPEILRTNLASVILQMTSIGLGDIGAFPFVEAPDKRNIQDGVK 460

Query: 607 SLTQHGAIDSKER------VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            L + GAI S +       +T +GR L+ LPVD  L +M++       +   + + A LS
Sbjct: 461 LLEELGAIKSHKETERGYILTDVGRQLAQLPVDPRLARMVIEARKQGAVREAMVIVAALS 520

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKD---RVRSKKWCKRRG 717
           +Q P      +    +   +       D L+ LN +  +L  ++D     + +K C++  
Sbjct: 521 IQDPRERPLDKQQASDEKHRRFHDKQSDFLSFLNLWN-YLKEQQDILSNAQFRKMCRQDF 579

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   L +Q +QV+ + G 
Sbjct: 580 LNYLRIREWQDLYTQLRQVVKEQGF 604



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 6/108 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 394 GRVSDGICIRLYSEEDFLGRPEFTDPEILRTNLASVILQMTSIGLGDIGAFPFVEAPDKR 453

Query: 868 NIESSVRSLTQHGAIDSKER------VTTLGRFLSDLPVDIPLGKMLV 909
           NI+  V+ L + GAI S +       +T +GR L+ LPVD  L +M++
Sbjct: 454 NIQDGVKLLEELGAIKSHKETERGYILTDVGRQLAQLPVDPRLARMVI 501



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q +Q I D + + +VVIIAG+TG GK+TQIP+  ++ G      I  TQPRR+A 
Sbjct: 69  NLPVSQKRQVIYDAIKQHQVVIIAGETGSGKTTQIPKICLELGRGVKGLIGHTQPRRLAA 128

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    VGY++RF     + T++  +T+G+LL
Sbjct: 129 RAVATRLAQELESELGTTVGYKVRFSDQVGDNTQVKLMTDGILL 172



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 173  AELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLIKRPDLKVIITSATIDPERFSR 232

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 233  HFNHAPIVEVSGRT 246


>gi|423102815|ref|ZP_17090517.1| ATP-dependent RNA helicase hrpA [Klebsiella oxytoca 10-5242]
 gi|376386849|gb|EHS99559.1| ATP-dependent RNA helicase hrpA [Klebsiella oxytoca 10-5242]
          Length = 1281

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 248/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF  A  G R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ-AHSG-RRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQQAAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGL 591



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQQAAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  QNLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|307309802|ref|ZP_07589452.1| ATP-dependent helicase HrpA [Escherichia coli W]
 gi|332279420|ref|ZP_08391833.1| ATP-dependent helicase HrpA [Shigella sp. D9]
 gi|378713180|ref|YP_005278073.1| ATP-dependent helicase HrpA [Escherichia coli KO11FL]
 gi|386608776|ref|YP_006124262.1| ATP-dependent helicase [Escherichia coli W]
 gi|386701546|ref|YP_006165383.1| ATP-dependent RNA helicase HrpA [Escherichia coli KO11FL]
 gi|386709237|ref|YP_006172958.1| ATP-dependent RNA helicase HrpA [Escherichia coli W]
 gi|417131790|ref|ZP_11976575.1| ATP-dependent helicase HrpA [Escherichia coli 5.0588]
 gi|417150941|ref|ZP_11990680.1| ATP-dependent helicase HrpA [Escherichia coli 1.2264]
 gi|419391209|ref|ZP_13932031.1| ATP-dependent helicase HrpA [Escherichia coli DEC15A]
 gi|419396246|ref|ZP_13937025.1| ATP-dependent helicase HrpA [Escherichia coli DEC15B]
 gi|419401625|ref|ZP_13942352.1| ATP-dependent helicase HrpA [Escherichia coli DEC15C]
 gi|419406812|ref|ZP_13947504.1| ATP-dependent helicase HrpA [Escherichia coli DEC15D]
 gi|419412316|ref|ZP_13952979.1| ATP-dependent helicase HrpA [Escherichia coli DEC15E]
 gi|422350655|ref|ZP_16431535.1| ATP-dependent helicase HrpA [Escherichia coli MS 117-3]
 gi|425422119|ref|ZP_18803310.1| ATP-dependent helicase HrpA [Escherichia coli 0.1288]
 gi|306909520|gb|EFN40014.1| ATP-dependent helicase HrpA [Escherichia coli W]
 gi|315060693|gb|ADT75020.1| ATP-dependent helicase [Escherichia coli W]
 gi|323378741|gb|ADX51009.1| ATP-dependent helicase HrpA [Escherichia coli KO11FL]
 gi|324021261|gb|EGB90480.1| ATP-dependent helicase HrpA [Escherichia coli MS 117-3]
 gi|332101772|gb|EGJ05118.1| ATP-dependent helicase HrpA [Shigella sp. D9]
 gi|378239691|gb|EHX99671.1| ATP-dependent helicase HrpA [Escherichia coli DEC15A]
 gi|378248584|gb|EHY08498.1| ATP-dependent helicase HrpA [Escherichia coli DEC15B]
 gi|378249279|gb|EHY09189.1| ATP-dependent helicase HrpA [Escherichia coli DEC15C]
 gi|378255937|gb|EHY15792.1| ATP-dependent helicase HrpA [Escherichia coli DEC15D]
 gi|378260504|gb|EHY20309.1| ATP-dependent helicase HrpA [Escherichia coli DEC15E]
 gi|383393073|gb|AFH18031.1| ATP-dependent RNA helicase HrpA [Escherichia coli KO11FL]
 gi|383404929|gb|AFH11172.1| ATP-dependent RNA helicase HrpA [Escherichia coli W]
 gi|386149644|gb|EIH00933.1| ATP-dependent helicase HrpA [Escherichia coli 5.0588]
 gi|386160435|gb|EIH22246.1| ATP-dependent helicase HrpA [Escherichia coli 1.2264]
 gi|408345851|gb|EKJ60163.1| ATP-dependent helicase HrpA [Escherichia coli 0.1288]
          Length = 1300

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T+LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTALGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTALGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|82777031|ref|YP_403380.1| ATP-dependent RNA helicase HrpA [Shigella dysenteriae Sd197]
 gi|309788506|ref|ZP_07683110.1| ATP-dependent helicase HrpA [Shigella dysenteriae 1617]
 gi|81241179|gb|ABB61889.1| helicase, ATP-dependent [Shigella dysenteriae Sd197]
 gi|308923888|gb|EFP69391.1| ATP-dependent helicase HrpA [Shigella dysenteriae 1617]
          Length = 1281

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPFLEAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFLEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPFLEAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFLEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|423120009|ref|ZP_17107693.1| ATP-dependent RNA helicase hrpA [Klebsiella oxytoca 10-5246]
 gi|376397371|gb|EHT10005.1| ATP-dependent RNA helicase hrpA [Klebsiella oxytoca 10-5246]
          Length = 1326

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 206 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 265

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 266 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESPGD 318

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 319 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 374

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 375 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 434

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 435 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 494

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 495 LEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 554

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 555 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRTDFLN 613

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 614 YLRVREWQDIYTQLRQVVKELGL 636



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 427 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 486

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 487 NIQDGVRLLEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 546

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 547 ITSALSIQ--DPRER 559



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIAC 93
           +LPV+Q K EI+  V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 102 NLPVSQKKDEILQAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 161

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  + T +  +T+G+LL
Sbjct: 162 RTVANRIAEELQSEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 205



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 206  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 265

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 266  HFNNAPIIEVSGRT 279


>gi|419763018|ref|ZP_14289262.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae DSM 30104]
 gi|397743703|gb|EJK90917.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae DSM 30104]
          Length = 1300

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +  + T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|359473576|ref|XP_002264955.2| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
            PRP16-like [Vitis vinifera]
          Length = 1289

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/451 (35%), Positives = 252/451 (55%), Gaps = 26/451 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D+ L  Y V+V+DE HER L+ D L G++K ++    + K+I+ SAT+N + F  +
Sbjct: 695  ETLKDSELDKYRVVVMDEAHERSLNTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNF 754

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F  +  I  +PGR +P+ + Y       +T  E    G   + +++     P    GD+L
Sbjct: 755  FGSVP-IFHIPGRTFPVNILYS------KTPCEDYVEGAVKQAMTVHITSPP----GDIL 803

Query: 430  IFMSGISEISSIVRAAQEYNEK-----SQG---WIVLPLHSTLSLEEQDRVFHYAPEGLR 481
            IFM+G  EI +   A  E  E+      +G     +LP++S L  + Q ++F  A +G R
Sbjct: 804  IFMTGQDEIEATCYALAERMEQLVSTTKKGVPKLSILPIYSQLPADLQAKIFQKAEDGAR 863

Query: 482  KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
            KCIV+TNIAETS+T+DGI +V+D+G  K   Y+    M  LQ F +S+A+A+QR GRAGR
Sbjct: 864  KCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGR 923

Query: 542  TGPGVCYRLYSEEQY--SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 599
            TGPG CYRLY+E  Y   LLA    PEI+R ++ +++L L  + + ++  F F++ PP +
Sbjct: 924  TGPGTCYRLYTESAYLNELLAS-PVPEIQRTNLGNVVLLLKSLKIENLLDFDFMDPPPQD 982

Query: 600  NIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVL 659
            NI +S+  L   GA+++   +T LG  + + P+D PL KML+ G     I+ VL++ ++L
Sbjct: 983  NILNSMYQLWVLGALNNVGGLTELGWKMVEFPLDPPLAKMLLIGEQLECINEVLTIVSML 1042

Query: 660  SVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIE 719
            SV S F     R  + + AR++      D LT+LN Y++W   K ++ R   WC    + 
Sbjct: 1043 SVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQW---KANQYRG-DWCNDHFLH 1098

Query: 720  EQRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
             +   +  ++RSQ   +L    +     GPD
Sbjct: 1099 VKGLRKAREVRSQLLDILKTLKIPLTSCGPD 1129



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 85/139 (61%), Gaps = 16/139 (11%)

Query: 17  LDFKQKEKFSTLMK-------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDT 63
           +DFK+  KF+  +K             + E +  LP+   ++E++  + + +VV++ G+T
Sbjct: 557 VDFKEDAKFAQHLKKDEAVSEFAKSKTLAEQRQYLPIYSVREELLQVIRENQVVVVVGET 616

Query: 64  GCGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           G GK+TQ+ QYL + G+     + CTQPRR+A +S++KRV+ E  ++  + VGY IRFE 
Sbjct: 617 GSGKTTQLTQYLHEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFED 676

Query: 121 HRREKTKIVFITEGLLLRQ 139
                TKI ++T+G+L+R+
Sbjct: 677 VTGPNTKIKYMTDGVLMRE 695



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 3/117 (2%)

Query: 809  RTGPGVCYRLYSEEQY--SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG CYRLY+E  Y   LLA    PEI+R ++ +++L L  + + ++  F F++ PP 
Sbjct: 923  RTGPGTCYRLYTESAYLNELLAS-PVPEIQRTNLGNVVLLLKSLKIENLLDFDFMDPPPQ 981

Query: 867  ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            +NI +S+  L   GA+++   +T LG  + + P+D PL KML+ G     I+ +L +
Sbjct: 982  DNILNSMYQLWVLGALNNVGGLTELGWKMVEFPLDPPLAKMLLIGEQLECINEVLTI 1038



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D+ L  Y V+V+DE HER L+ D L G++K ++    + K+I+ SAT+N + F  +F  +
Sbjct: 699  DSELDKYRVVVMDEAHERSLNTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSV 758


>gi|209918687|ref|YP_002292771.1| ATP-dependent RNA helicase HrpA [Escherichia coli SE11]
 gi|218553938|ref|YP_002386851.1| ATP-dependent RNA helicase HrpA [Escherichia coli IAI1]
 gi|209911946|dbj|BAG77020.1| ATP-dependent helicase [Escherichia coli SE11]
 gi|218360706|emb|CAQ98267.1| ATP-dependent helicase [Escherichia coli IAI1]
          Length = 1281

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T+LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTALGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTALGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|425304957|ref|ZP_18694710.1| ATP-dependent helicase HrpA [Escherichia coli N1]
 gi|408230426|gb|EKI53825.1| ATP-dependent helicase HrpA [Escherichia coli N1]
          Length = 1300

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERV-----TSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+V     T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQVSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKERV-----TTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E+V     T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQVSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|300113864|ref|YP_003760439.1| ATP-dependent helicase HrpA [Nitrosococcus watsonii C-113]
 gi|299539801|gb|ADJ28118.1| ATP-dependent helicase HrpA [Nitrosococcus watsonii C-113]
          Length = 1301

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 152/430 (35%), Positives = 240/430 (55%), Gaps = 16/430 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D FL  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 177 AETQGDRFLDQYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIDTERFSQ 236

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F++ A II++ GR YP+++ Y P+     T+   L  G    IL  +D+   R   GD+
Sbjct: 237 HFSQ-APIIEISGRTYPVEIRYRPLCGEQATQERNLSEG----ILDAVDQ-LSRLGPGDI 290

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+ G  EI     A ++++       +LPL++ LS  EQ+RVF   P   R+ +++TN
Sbjct: 291 LVFLPGEREIRETAEALRKHHPPHTE--ILPLYARLSSAEQNRVF--KPHSGRRIVLATN 346

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI +VVD G  +   Y V +K+  L    IS++SA QR GR GR   GVC 
Sbjct: 347 VAETSLTVPGIHYVVDPGLARLSRYSVRSKVQRLPIEKISQSSANQRAGRCGRIATGVCI 406

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  + LG V  FPFL+ P  + I   +R L
Sbjct: 407 RLYSEEDFLDRPEFTDPEILRTNLASVILQMKSLQLGAVEDFPFLDPPLPKMINDGLRLL 466

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GAID    +T +G+ L+ LP+D  +G+M++ G  FH +  +L +A+ LS+Q P    
Sbjct: 467 AELGAIDKTHNLTPIGQRLTQLPIDPRIGRMVLAGGEFHCLREILIIASALSIQDPRERP 526

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAY----KEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
                  + A    +    D L+ L  +    ++W  + ++++R+  +C+   +   R  
Sbjct: 527 LDAQQAADEAHSRFQDERSDFLSYLKLWEDLQRQWGRLSQNKLRA--YCREHFLSYLRLR 584

Query: 725 EVTKLRSQFK 734
           E   +  Q K
Sbjct: 585 EWRDIHQQLK 594



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 77/130 (59%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLYSEE +    E++ PEI R ++ S++L +  + LG V  FPFL+ P  +
Sbjct: 398 GRIATGVCIRLYSEEDFLDRPEFTDPEILRTNLASVILQMKSLQLGAVEDFPFLDPPLPK 457

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I   +R L + GAID    +T +G+ L+ LP+D  +G+M++ G  FH +  +L++  AL
Sbjct: 458 MINDGLRLLAELGAIDKTHNLTPIGQRLTQLPIDPRIGRMVLAGGEFHCLREILIIASAL 517

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 518 SIQ--DPRER 525



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 3/111 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRI 91
           + SLPV + ++EI   +   +VVI+ G+TG GK+TQ+P+  ++ G      I  TQPRRI
Sbjct: 71  EQSLPVVERREEIGTAIRNHQVVILCGETGSGKTTQLPKICLELGRGVAGMIGHTQPRRI 130

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
           A  +++ R+A E  S    +VGY++RF       T I  +T+G+LL +  G
Sbjct: 131 AARTVANRIAKELNSDMGQIVGYKVRFHDQVGPSTYIKLMTDGILLAETQG 181



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D FL  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 177  AETQGDRFLDQYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIDTERFSQ 236

Query: 1174 YFNRIAKDLLSGST 1187
            +F++     +SG T
Sbjct: 237  HFSQAPIIEISGRT 250



 Score = 47.4 bits (111), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 15/114 (13%)

Query: 925  LALNFGAIDSKERVTSLGRFLSDLP-VDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAID 983
            L  N  ++  + +   LG  + D P +D PL KM+  G           L L    GAID
Sbjct: 426  LRTNLASVILQMKSLQLG-AVEDFPFLDPPLPKMINDG-----------LRLLAELGAID 473

Query: 984  SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKER 1037
                +T +G+ L+ LP+D  +G+M++ G  FH +  +L++  AL+    D +ER
Sbjct: 474  KTHNLTPIGQRLTQLPIDPRIGRMVLAGGEFHCLREILIIASALSIQ--DPRER 525



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 975  LALNFGAIDSKERVTSLGRFLSDLP-VDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAID 1033
            L  N  ++  + +   LG  + D P +D PL KM+  G           L L    GAID
Sbjct: 426  LRTNLASVILQMKSLQLG-AVEDFPFLDPPLPKMINDG-----------LRLLAELGAID 473

Query: 1034 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNF 1079
                +T +G+ L+ LP+D  +G+M++ G  FH +  +L++  AL+ 
Sbjct: 474  KTHNLTPIGQRLTQLPIDPRIGRMVLAGGEFHCLREILIIASALSI 519


>gi|331641987|ref|ZP_08343122.1| ATP-dependent helicase HrpA [Escherichia coli H736]
 gi|331038785|gb|EGI11005.1| ATP-dependent helicase HrpA [Escherichia coli H736]
          Length = 1300

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|419369700|ref|ZP_13910826.1| ATP-dependent helicase HrpA [Escherichia coli DEC14A]
 gi|378221375|gb|EHX81626.1| ATP-dependent helicase HrpA [Escherichia coli DEC14A]
          Length = 1300

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T+LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTALGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTALGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|424830402|ref|ZP_18255130.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae Ecl8]
 gi|414707827|emb|CCN29531.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae Ecl8]
          Length = 1300

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +  + T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|419881702|ref|ZP_14403011.1| ATP-dependent RNA helicase HrpA, partial [Escherichia coli O111:H11
           str. CVM9545]
 gi|388364531|gb|EIL28377.1| ATP-dependent RNA helicase HrpA, partial [Escherichia coli O111:H11
           str. CVM9545]
          Length = 627

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRIDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 461

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 462 IQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 521

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 522 TSALSIQ--DPRER 533



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|375260690|ref|YP_005019860.1| ATP-dependent RNA helicase HrpA [Klebsiella oxytoca KCTC 1686]
 gi|365910168|gb|AEX05621.1| ATP-dependent RNA helicase HrpA [Klebsiella oxytoca KCTC 1686]
          Length = 1281

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 248/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF  A  G R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ-AHSG-RRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGL 591



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|343499036|ref|ZP_08737038.1| ATP-dependent RNA helicase HrpA [Vibrio tubiashii ATCC 19109]
 gi|418478866|ref|ZP_13047959.1| ATP-dependent RNA helicase HrpA [Vibrio tubiashii NCIMB 1337 = ATCC
           19106]
 gi|342823511|gb|EGU58129.1| ATP-dependent RNA helicase HrpA [Vibrio tubiashii ATCC 19109]
 gi|384573416|gb|EIF03910.1| ATP-dependent RNA helicase HrpA [Vibrio tubiashii NCIMB 1337 = ATCC
           19106]
          Length = 1278

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 145/393 (36%), Positives = 231/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRYLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A II+V GR YP++  Y P+   D    ++LD G +  +  + D+       GD+
Sbjct: 221 HFSN-APIIEVSGRTYPVETRYRPLRGEDDVDRDQLD-GIFEAVDELCDEGL-----GDI 273

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 274 LIFMNGEREIRDTADALAKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 329

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 330 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 389

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ Y+   E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR L
Sbjct: 390 RLYSEDDYNSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLL 449

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D K+R+TS+GR L+ LP+D  L +M++    +  +  ++ +A+ LS+Q 
Sbjct: 450 EELGAINEKAKDPKKRLTSVGRQLAKLPIDPRLARMVLEAPKYGALKELMIIASALSIQD 509

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT +N +
Sbjct: 510 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNLW 542



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ Y+   E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 381 GRVEEGICIRLYSEDDYNSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 440

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T++GR L+ LP+D  L +M++    +  +  +++
Sbjct: 441 NIQDGVRLLEELGAINEKAKDPKKRLTSVGRQLAKLPIDPRLARMVLEAPKYGALKELMI 500

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 501 IASALSIQ--DPRER 513



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 58  LPVSQKKDDIAQAIEQNQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMETKLGEYVGYKVRFNDQISENTQIKLMTDGILL 160



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRYLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 221  HFSNAPIIEVSGRT 234


>gi|145698255|ref|NP_415931.4| predicted ATP-dependent helicase [Escherichia coli str. K-12
           substr. MG1655]
 gi|170081089|ref|YP_001730409.1| ATP-dependent RNA helicase HrpA [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238900641|ref|YP_002926437.1| ATP-dependent RNA helicase HrpA [Escherichia coli BW2952]
 gi|300950296|ref|ZP_07164231.1| ATP-dependent helicase HrpA [Escherichia coli MS 116-1]
 gi|300954073|ref|ZP_07166551.1| ATP-dependent helicase HrpA [Escherichia coli MS 175-1]
 gi|301017667|ref|ZP_07182340.1| ATP-dependent helicase HrpA [Escherichia coli MS 196-1]
 gi|301647118|ref|ZP_07246940.1| ATP-dependent helicase HrpA [Escherichia coli MS 146-1]
 gi|386280495|ref|ZP_10058161.1| ATP-dependent RNA helicase hrpA [Escherichia sp. 4_1_40B]
 gi|386595769|ref|YP_006092169.1| ATP-dependent helicase HrpA [Escherichia coli DH1]
 gi|387621130|ref|YP_006128757.1| ATP-dependent RNA helicase HrpA [Escherichia coli DH1]
 gi|417264781|ref|ZP_12052172.1| ATP-dependent helicase HrpA [Escherichia coli 2.3916]
 gi|417274255|ref|ZP_12061595.1| ATP-dependent helicase HrpA [Escherichia coli 2.4168]
 gi|417289808|ref|ZP_12077091.1| ATP-dependent helicase HrpA [Escherichia coli B41]
 gi|417946266|ref|ZP_12589487.1| ATP-dependent RNA helicase HrpA [Escherichia coli XH140A]
 gi|417977990|ref|ZP_12618766.1| ATP-dependent RNA helicase HrpA [Escherichia coli XH001]
 gi|418958235|ref|ZP_13510155.1| ATP-dependent helicase HrpA [Escherichia coli J53]
 gi|419142031|ref|ZP_13686778.1| ATP-dependent helicase HrpA [Escherichia coli DEC6A]
 gi|419147783|ref|ZP_13692465.1| ATP-dependent helicase HrpA [Escherichia coli DEC6B]
 gi|419153376|ref|ZP_13697956.1| ATP-dependent helicase HrpA [Escherichia coli DEC6C]
 gi|419163893|ref|ZP_13708355.1| ATP-dependent helicase HrpA [Escherichia coli DEC6E]
 gi|419940433|ref|ZP_14457170.1| ATP-dependent RNA helicase HrpA [Escherichia coli 75]
 gi|422770664|ref|ZP_16824355.1| ATP-dependent helicase HrpA [Escherichia coli E482]
 gi|422817152|ref|ZP_16865366.1| ATP-dependent RNA helicase hrpA [Escherichia coli M919]
 gi|423705092|ref|ZP_17679515.1| ATP-dependent RNA helicase hrpA [Escherichia coli H730]
 gi|425114820|ref|ZP_18516635.1| ATP-dependent helicase HrpA [Escherichia coli 8.0566]
 gi|425119531|ref|ZP_18521244.1| ATP-dependent helicase HrpA [Escherichia coli 8.0569]
 gi|425272481|ref|ZP_18663930.1| ATP-dependent helicase HrpA [Escherichia coli TW15901]
 gi|425282973|ref|ZP_18674046.1| ATP-dependent helicase HrpA [Escherichia coli TW00353]
 gi|432563625|ref|ZP_19800221.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE51]
 gi|432580061|ref|ZP_19816490.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE56]
 gi|432626957|ref|ZP_19862938.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE77]
 gi|432636630|ref|ZP_19872509.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE81]
 gi|432660642|ref|ZP_19896290.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE111]
 gi|432685193|ref|ZP_19920499.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE156]
 gi|432691338|ref|ZP_19926571.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE161]
 gi|432704094|ref|ZP_19939207.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE171]
 gi|432736866|ref|ZP_19971633.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE42]
 gi|432954787|ref|ZP_20146803.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE197]
 gi|433047641|ref|ZP_20235031.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE120]
 gi|442594648|ref|ZP_21012531.1| ATP-dependent helicase HrpA [Escherichia coli O10:K5(L):H4 str.
           ATCC 23506]
 gi|13638202|sp|P43329.3|HRPA_ECOLI RecName: Full=ATP-dependent RNA helicase HrpA
 gi|145693127|gb|AAC74495.2| putative ATP-dependent helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|169888924|gb|ACB02631.1| ATP-dependent helicase [Escherichia coli str. K-12 substr. DH10B]
 gi|238860044|gb|ACR62042.1| ATP-dependent helicase [Escherichia coli BW2952]
 gi|260449458|gb|ACX39880.1| ATP-dependent helicase HrpA [Escherichia coli DH1]
 gi|299882705|gb|EFI90916.1| ATP-dependent helicase HrpA [Escherichia coli MS 196-1]
 gi|300318932|gb|EFJ68716.1| ATP-dependent helicase HrpA [Escherichia coli MS 175-1]
 gi|300450354|gb|EFK13974.1| ATP-dependent helicase HrpA [Escherichia coli MS 116-1]
 gi|301074707|gb|EFK89513.1| ATP-dependent helicase HrpA [Escherichia coli MS 146-1]
 gi|315136053|dbj|BAJ43212.1| ATP-dependent RNA helicase HrpA [Escherichia coli DH1]
 gi|323942174|gb|EGB38347.1| ATP-dependent helicase HrpA [Escherichia coli E482]
 gi|342362040|gb|EGU26166.1| ATP-dependent RNA helicase HrpA [Escherichia coli XH140A]
 gi|344192400|gb|EGV46494.1| ATP-dependent RNA helicase HrpA [Escherichia coli XH001]
 gi|377996340|gb|EHV59448.1| ATP-dependent helicase HrpA [Escherichia coli DEC6A]
 gi|377997887|gb|EHV60984.1| ATP-dependent helicase HrpA [Escherichia coli DEC6B]
 gi|378001222|gb|EHV64282.1| ATP-dependent helicase HrpA [Escherichia coli DEC6C]
 gi|378012696|gb|EHV75624.1| ATP-dependent helicase HrpA [Escherichia coli DEC6E]
 gi|384379028|gb|EIE36899.1| ATP-dependent helicase HrpA [Escherichia coli J53]
 gi|385539329|gb|EIF86163.1| ATP-dependent RNA helicase hrpA [Escherichia coli M919]
 gi|385705735|gb|EIG42800.1| ATP-dependent RNA helicase hrpA [Escherichia coli H730]
 gi|386122455|gb|EIG71066.1| ATP-dependent RNA helicase hrpA [Escherichia sp. 4_1_40B]
 gi|386221678|gb|EII44110.1| ATP-dependent helicase HrpA [Escherichia coli 2.3916]
 gi|386232683|gb|EII64668.1| ATP-dependent helicase HrpA [Escherichia coli 2.4168]
 gi|386255846|gb|EIJ05534.1| ATP-dependent helicase HrpA [Escherichia coli B41]
 gi|388403187|gb|EIL63723.1| ATP-dependent RNA helicase HrpA [Escherichia coli 75]
 gi|408194950|gb|EKI20380.1| ATP-dependent helicase HrpA [Escherichia coli TW15901]
 gi|408203840|gb|EKI28846.1| ATP-dependent helicase HrpA [Escherichia coli TW00353]
 gi|408570546|gb|EKK46507.1| ATP-dependent helicase HrpA [Escherichia coli 8.0566]
 gi|408571820|gb|EKK47748.1| ATP-dependent helicase HrpA [Escherichia coli 8.0569]
 gi|431095483|gb|ELE01094.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE51]
 gi|431106917|gb|ELE11106.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE56]
 gi|431164905|gb|ELE65296.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE77]
 gi|431172444|gb|ELE72582.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE81]
 gi|431201286|gb|ELF00004.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE111]
 gi|431223166|gb|ELF20425.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE156]
 gi|431227806|gb|ELF24934.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE161]
 gi|431244635|gb|ELF38941.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE171]
 gi|431284622|gb|ELF75474.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE42]
 gi|431468421|gb|ELH48356.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE197]
 gi|431568690|gb|ELI41657.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE120]
 gi|441605396|emb|CCP97790.1| ATP-dependent helicase HrpA [Escherichia coli O10:K5(L):H4 str.
           ATCC 23506]
          Length = 1300

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|425076964|ref|ZP_18480067.1| ATP-dependent RNA helicase hrpA [Klebsiella pneumoniae subsp.
           pneumoniae WGLW1]
 gi|425087597|ref|ZP_18490690.1| ATP-dependent RNA helicase hrpA [Klebsiella pneumoniae subsp.
           pneumoniae WGLW3]
 gi|405592673|gb|EKB66125.1| ATP-dependent RNA helicase hrpA [Klebsiella pneumoniae subsp.
           pneumoniae WGLW1]
 gi|405604321|gb|EKB77442.1| ATP-dependent RNA helicase hrpA [Klebsiella pneumoniae subsp.
           pneumoniae WGLW3]
          Length = 1300

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +  + T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|389806040|ref|ZP_10203181.1| ATP-dependent RNA helicase [Rhodanobacter thiooxydans LCS2]
 gi|388446308|gb|EIM02349.1| ATP-dependent RNA helicase [Rhodanobacter thiooxydans LCS2]
          Length = 1387

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 169/506 (33%), Positives = 266/506 (52%), Gaps = 47/506 (9%)

Query: 267 GEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLD 326
           GE+V        + V   D++ ER L      G++        E   D +LS+YD L++D
Sbjct: 158 GEVVG-------FQVRFNDQVSERTLIKFMTDGIL------LAETQGDPWLSAYDTLIID 204

Query: 327 EIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPI 386
           E HER L+ DFLLG +K L     E+KII+ SATI+   F  +F+  A +++V GR YP+
Sbjct: 205 EAHERSLNIDFLLGYLKRLATKRPELKIIVTSATIDTARFAEHFDG-APVVEVEGRAYPV 263

Query: 387 QLEYHPI------------VELDRTKSEK-----------LDPGPYIRILSIIDKKYPRT 423
           +L + P+               D  KS +           +  G    I +++D+     
Sbjct: 264 ELRWRPVDIPVGAHPVRDAPGADVAKSHRAQGALLQARRDMQQGSAEHIAAVLDEITRDD 323

Query: 424 ERGDVLIFMSGISEISSI--VRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR 481
            RGDVL+F+ G  EI     + + ++Y E      +LPL++ LS  +QDRVF   P   R
Sbjct: 324 PRGDVLVFLPGEREIRDAHQLLSRRQYRETE----ILPLYARLSAGDQDRVFK--PGVKR 377

Query: 482 KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
           + +++TN+AETS+T+  IR+V+D+G  +   Y   +++  L    IS+A+A+QRKGR GR
Sbjct: 378 RVVLATNVAETSLTVPRIRYVIDTGTARVKRYSQRSQLERLHVEPISQAAADQRKGRCGR 437

Query: 542 TGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENI 601
            GPG+CYRLY E  ++  A ++ PE+ R S+ +++L ++ + LG+V +FPFLEAP    +
Sbjct: 438 VGPGICYRLYDEADFAGRAAFTDPELLRSSLANVILRMLALKLGEVDEFPFLEAPDPRVV 497

Query: 602 ESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
               R LT+  AID   ++T++GR L+ LP+D+ L +MLV G   H +  +L + A LS+
Sbjct: 498 ADGFRRLTEISAIDEARKLTAIGRSLARLPIDVQLARMLVEGEQLHALRELLVIVAFLSI 557

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIE 719
           Q P    A      + A         D   VLN ++ +    ++  +SK   WC R  + 
Sbjct: 558 QDPRERPADARQQADAAHAAFADPKSDFAGVLNLWRTYHDAHEELTQSKLRDWCGRHFLS 617

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITD 745
             R  E  +L  Q   V+ + G   D
Sbjct: 618 FMRMREWRELHRQLLLVVEELGWKLD 643



 Score =  103 bits (257), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 74/116 (63%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R GPG+CYRLY E  ++  A ++ PE+ R S+ +++L ++ + LG+V +FPFLEAP   
Sbjct: 436 GRVGPGICYRLYDEADFAGRAAFTDPELLRSSLANVILRMLALKLGEVDEFPFLEAPDPR 495

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            +    R LT+  AID   ++T +GR L+ LP+D+ L +MLV G   H +  +L++
Sbjct: 496 VVADGFRRLTEISAIDEARKLTAIGRSLARLPIDVQLARMLVEGEQLHALRELLVI 551



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 72/110 (65%), Gaps = 3/110 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIA 92
            SLP++   ++I+  + + +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRR+A
Sbjct: 82  ESLPISARGEDIVKLIREHQVVVIAGETGSGKTTQLPKLCLAAGRGEAGMIGCTQPRRLA 141

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
             S+++RVA E  +    +VG+Q+RF     E+T I F+T+G+LL +  G
Sbjct: 142 ARSVARRVAEELGTPLGEVVGFQVRFNDQVSERTLIKFMTDGILLAETQG 191



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 22/181 (12%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D +LS+YD L++DE HER L+ DFLLG +K L     E+KII+ SATI+   F  
Sbjct: 187  AETQGDPWLSAYDTLIIDEAHERSLNIDFLLGYLKRLATKRPELKIIVTSATIDTARFAE 246

Query: 1174 YFNRIAKDLLSGSTARSHK-DVTILKVILASGLYP-QVAIGDEFNTSETVKEALFHCK-- 1229
            +F+      + G   R++  ++    V +  G +P + A G +   S   + AL   +  
Sbjct: 247  HFDGAPVVEVEG---RAYPVELRWRPVDIPVGAHPVRDAPGADVAKSHRAQGALLQARRD 303

Query: 1230 -DKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPG---LKLPGRNVISSKHQLLVYMSLLE 1285
              +G    H  +V         I+ DD    P G   + LPG   I   HQLL      E
Sbjct: 304  MQQGSAE-HIAAVLDE------ITRDD----PRGDVLVFLPGEREIRDAHQLLSRRQYRE 352

Query: 1286 T 1286
            T
Sbjct: 353  T 353



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 29/43 (67%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1023
            AID   ++T++GR L+ LP+D+ L +MLV G   H +  +L++
Sbjct: 509  AIDEARKLTAIGRSLARLPIDVQLARMLVEGEQLHALRELLVI 551



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 29/43 (67%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
            AID   ++T++GR L+ LP+D+ L +MLV G   H +  +L++
Sbjct: 509  AIDEARKLTAIGRSLARLPIDVQLARMLVEGEQLHALRELLVI 551


>gi|417283963|ref|ZP_12071260.1| ATP-dependent helicase HrpA [Escherichia coli 3003]
 gi|425277647|ref|ZP_18668926.1| ATP-dependent helicase HrpA [Escherichia coli ARS4.2123]
 gi|386243906|gb|EII85639.1| ATP-dependent helicase HrpA [Escherichia coli 3003]
 gi|408203903|gb|EKI28908.1| ATP-dependent helicase HrpA [Escherichia coli ARS4.2123]
          Length = 1300

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D+ L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDHLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D+ L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDHLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|330015028|ref|ZP_08308058.1| ATP-dependent helicase HrpA [Klebsiella sp. MS 92-3]
 gi|328532116|gb|EGF58921.1| ATP-dependent helicase HrpA [Klebsiella sp. MS 92-3]
          Length = 1300

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +  + T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432881309|ref|ZP_20097681.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE154]
 gi|431412259|gb|ELG95344.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE154]
          Length = 1300

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|188495607|ref|ZP_03002877.1| ATP-dependent helicase HrpA [Escherichia coli 53638]
 gi|421778567|ref|ZP_16215136.1| ATP-dependent helicase HrpA [Escherichia coli AD30]
 gi|188490806|gb|EDU65909.1| ATP-dependent helicase HrpA [Escherichia coli 53638]
 gi|408456365|gb|EKJ80187.1| ATP-dependent helicase HrpA [Escherichia coli AD30]
          Length = 1300

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432369475|ref|ZP_19612569.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE10]
 gi|430886632|gb|ELC09482.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE10]
          Length = 1300

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|365141794|ref|ZP_09347294.1| ATP-dependent RNA helicase hrpA [Klebsiella sp. 4_1_44FAA]
 gi|363652720|gb|EHL91748.1| ATP-dependent RNA helicase hrpA [Klebsiella sp. 4_1_44FAA]
          Length = 1300

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +  + T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|418516876|ref|ZP_13083046.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
           str. GSPB1386]
 gi|418521578|ref|ZP_13087621.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
           str. GSPB2388]
 gi|410702423|gb|EKQ60929.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
           str. GSPB2388]
 gi|410706473|gb|EKQ64933.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
           str. GSPB1386]
          Length = 1373

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 158/448 (35%), Positives = 248/448 (55%), Gaps = 40/448 (8%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LSSYD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPI-----------VELDRTKSEKLDPGPYIRILSIID 417
           +F+  A +I V GR +P+++ Y P+               R     ++      I++ ID
Sbjct: 240 HFDN-APVISVEGRTFPVEVRYRPLEGDTGDGDDGEHGSGRDGERSVNDA----IVAAID 294

Query: 418 KKYPRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHY 475
           +      RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QDRVF+ 
Sbjct: 295 EITRIDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDRVFNP 350

Query: 476 APEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQR 535
            P   R+ +++TN+AETS+T+  IR+VVD G  +   Y+   K+  L    IS+ASA QR
Sbjct: 351 GPR--RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYNPRQKLDRLHIEPISQASANQR 408

Query: 536 KGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEA 595
            GR GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEA
Sbjct: 409 MGRCGRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEA 468

Query: 596 PPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           P    +    + L + GAID++ R+T+ GR ++ LPVD+ L +MLV       +  ++ +
Sbjct: 469 PDERAVADGWQQLLELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 528

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDRVR 708
           AA L +Q P      R P+   A     +   D        L + +AY++   V +D  +
Sbjct: 529 AAFLGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDLTQ 581

Query: 709 SK--KWCKRRGIEEQRFYEVTKLRSQFK 734
           SK   WC R  +   R  E  +L  Q +
Sbjct: 582 SKLRDWCNRHFLGFLRMREWRELHRQLR 609



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 413 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 472

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 473 AVADGWQQLLELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 530

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 531 FLGIQDPRER 540



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 48/63 (76%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LSSYD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           + LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  DQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +     VG+Q+RF     ++++I F+T+G+LL
Sbjct: 135 ARAVAARVADELKTPLGTTVGFQVRFTDRVSDQSRIKFMTDGILL 179



 Score = 47.8 bits (112), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 28/39 (71%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++A+D +LSSYD +I+DE HER L  DFLLG +   LH
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLH 218



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 482  LELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAAFLGIQDPRE 539

Query: 1037 R 1037
            R
Sbjct: 540  R 540



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M+++
Sbjct: 482  LELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 528


>gi|424933661|ref|ZP_18352033.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KpQ3]
 gi|407807848|gb|EKF79099.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae KpQ3]
          Length = 1281

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +  + T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGL 591



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 160



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|386034602|ref|YP_005954515.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae KCTC 2242]
 gi|339761730|gb|AEJ97950.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae KCTC 2242]
          Length = 1281

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +  + T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGL 591



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 160



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|416287800|ref|ZP_11648987.1| ATP-dependent helicase hrpA [Shigella boydii ATCC 9905]
 gi|320178239|gb|EFW53215.1| ATP-dependent helicase hrpA [Shigella boydii ATCC 9905]
          Length = 1300

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR+GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRSGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I + +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDIREAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|170020255|ref|YP_001725209.1| ATP-dependent RNA helicase HrpA [Escherichia coli ATCC 8739]
 gi|169755183|gb|ACA77882.1| ATP-dependent helicase HrpA [Escherichia coli ATCC 8739]
          Length = 1300

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432416579|ref|ZP_19659195.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE44]
 gi|430941199|gb|ELC61358.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE44]
          Length = 1300

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|399545196|ref|YP_006558504.1| ATP-dependent RNA helicase hrpA [Marinobacter sp. BSs20148]
 gi|399160528|gb|AFP31091.1| ATP-dependent RNA helicase hrpA [Marinobacter sp. BSs20148]
          Length = 1331

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 151/361 (41%), Positives = 220/361 (60%), Gaps = 14/361 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            EV  D FL  YD L++DE HER L+ DFLLG +K LL    ++KII+ SATI +  F  
Sbjct: 208 AEVQHDPFLDRYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIELGRFSE 267

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDK--KYPRTERG 426
           +FN  A +I+V GR +P+++ Y P+V  D  + +    G  ++ L  I++  +      G
Sbjct: 268 FFNN-APVIEVTGRTFPVEVRYRPLVGDDDDRDQGWTDG-ILQALEEIEQHERSASQPPG 325

Query: 427 DVLIFMSGISEI---SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKC 483
           DVL+FM G  EI   S+++R A+  + +     VLPL+S LS +EQ+RVF  +  G R+ 
Sbjct: 326 DVLVFMPGEREIRSLSNVLRHAELRHTE-----VLPLYSRLSNQEQNRVFQ-SHRG-RRL 378

Query: 484 IVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543
           ++STN+AETS+T+ GIR+V+D+G  +   Y V +K+  L    IS+ASA QR GR GR  
Sbjct: 379 VLSTNVAETSLTVPGIRYVIDTGVARISRYSVRSKIQRLPIEPISQASANQRAGRCGRVA 438

Query: 544 PGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           PG+C+RLY E  +    EY+ PEI R ++ S++L +   GLGD+R FPFLE+P    I  
Sbjct: 439 PGICFRLYDENDFINRPEYTDPEILRTNLASVILQMATSGLGDIRHFPFLESPDNRQIND 498

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
             + L + GA+  K RVT+ GR +S LP+D  L +MLV  +    +  +L + A LSVQ 
Sbjct: 499 GYKLLEELGAVTDKRRVTAAGRTMSRLPLDPRLARMLVISAEQGSLSELLIIIAGLSVQD 558

Query: 664 P 664
           P
Sbjct: 559 P 559



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 70/121 (57%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PG+C+RLY E  +    EY+ PEI R ++ S++L +   GLGD+R FPFLE+P   
Sbjct: 435 GRVAPGICFRLYDENDFINRPEYTDPEILRTNLASVILQMATSGLGDIRHFPFLESPDNR 494

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I    + L + GA+  K RVT  GR +S LP+D  L +MLV  +    +  +L++   L
Sbjct: 495 QINDGYKLLEELGAVTDKRRVTAAGRTMSRLPLDPRLARMLVISAEQGSLSELLIIIAGL 554

Query: 928 N 928
           +
Sbjct: 555 S 555



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIAC 93
            LPV++   +I   +   +VVIIAG+TG GK+TQIP+  + AG      I  TQPRRIA 
Sbjct: 104 GLPVSERVDDIAAAIADNQVVIIAGETGSGKTTQIPKICMNAGLGIRGLIGHTQPRRIAA 163

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E   Q    VGYQIRF     E +++  +T+G+LL
Sbjct: 164 RSVAARIAEELGEQTGRQVGYQIRFTDTTSEDSRLKVMTDGILL 207



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +V  D FL  YD L++DE HER L+ DFLLG +K LL    ++KII+ SATI +  F  
Sbjct: 208  AEVQHDPFLDRYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIELGRFSE 267

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      ++G T
Sbjct: 268  FFNNAPVIEVTGRT 281



 Score = 44.3 bits (103), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 192 AYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLY 251
            Y+I   +   E  RL+ M    +   ++HDP         FL  YD LI+DE HER L 
Sbjct: 183 GYQIRFTDTTSEDSRLKVMTDGILLAEVQHDP---------FLDRYDTLIIDEAHERSLN 233

Query: 252 GDFLLGVI 259
            DFLLG +
Sbjct: 234 IDFLLGYL 241


>gi|422831392|ref|ZP_16879537.1| ATP-dependent RNA helicase hrpA [Escherichia coli B093]
 gi|371602109|gb|EHN90822.1| ATP-dependent RNA helicase hrpA [Escherichia coli B093]
          Length = 1300

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPECFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPECFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|355753664|gb|EHH57629.1| Putative ATP-dependent RNA helicase DHX33, partial [Macaca
           fascicularis]
          Length = 685

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 156 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVD 215

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 216 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 263

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 264 PPSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPALLVLPLYASLPYAQQLRVFQGA 321

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 322 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRA 381

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   GVCYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 382 GRAGREDSGVCYRLYTEEEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 441

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 442 SPDHIQAAIAQLDLLGALEHKDDQLSLTPIGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 501

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 502 TIVSLLSVDSVLHNPPSRREEVQGVRKKFVSSEGDHMTLLNIYRTFKNLGGNKD------ 555

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WCK   +  +    V ++R+Q + +
Sbjct: 556 WCKENFVNSKNMMLVAEVRAQLRDI 580



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 49  RRSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 108

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RF+    E T+I F+T+G+LLR+
Sbjct: 109 AAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLRE 156



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   GVCYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 386 REDSGVCYRLYTEEEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 445

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 446 IQAAIAQLDLLGALEHKDDQLSLTPIGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 503



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 159  SDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVDLFS 218

Query: 1173 TYFN 1176
             YFN
Sbjct: 219  QYFN 222


>gi|152970037|ref|YP_001335146.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954886|gb|ABR76916.1| helicase, ATP-dependent [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 1300

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +  + T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432670383|ref|ZP_19905918.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE119]
 gi|431211755|gb|ELF09715.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE119]
          Length = 1300

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|422018192|ref|ZP_16364749.1| ATP-dependent RNA helicase HrpA [Providencia alcalifaciens Dmel2]
 gi|414104484|gb|EKT66049.1| ATP-dependent RNA helicase HrpA [Providencia alcalifaciens Dmel2]
          Length = 1299

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 155/453 (34%), Positives = 245/453 (54%), Gaps = 24/453 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176 AELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSR 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRTERG 426
           +F   A I++V GR YP+++ Y PI+  D             +I  IID   +  R   G
Sbjct: 236 HFGH-APIVEVSGRTYPVEVRYRPIMGDDNDSDRD-------QIDGIIDAVNELGRESAG 287

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFMSG  EI     A  +   +     +LPL + LS  EQ+R+FH  P G R+ I++
Sbjct: 288 DILIFMSGEREIRDTADALSKLQLRHTE--ILPLFARLSNSEQNRIFH--PHGGRRIILA 343

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D+G  +   Y    K+  L    IS+ASA QRKGR GR   G+
Sbjct: 344 TNVAETSLTVPGIKYVIDTGYARISRYSYRTKVQRLPVEAISQASANQRKGRCGRVSDGI 403

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V+
Sbjct: 404 CIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTSIGLGDIAAFPFVEAPDKRNIQDGVK 463

Query: 607 SLTQ------HGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            L +      H  +D   R+T +GR L+ LPVD  L +M++    +  +   + + + LS
Sbjct: 464 LLEELGGIQPHKEVDKGYRLTDIGRQLAQLPVDPRLARMVIEARKYGAVRETMVIVSALS 523

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  LN + ++L  +++ + +   +K C++  
Sbjct: 524 IQDPRERPLDKQQASDEKHRRFHDKQSDFLAFLNLW-DYLKQQQEELSNAQFRKMCRQDF 582

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
           +   R  E   L +Q +QV+ + G   +    D
Sbjct: 583 LNYLRIREWQDLYTQLRQVVKEQGFAINSAAAD 615



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 77/136 (56%), Gaps = 8/136 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 397 GRVSDGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTSIGLGDIAAFPFVEAPDKR 456

Query: 868 NIESSVRSLTQ------HGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           NI+  V+ L +      H  +D   R+T +GR L+ LPVD  L +M++    +  +   +
Sbjct: 457 NIQDGVKLLEELGGIQPHKEVDKGYRLTDIGRQLAQLPVDPRLARMVIEARKYGAVRETM 516

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 517 VIVSALSIQ--DPRER 530



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 7/106 (6%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ-----AGFQRIACTQPRRI 91
           +LPV+Q KQ I D + + +VVIIAG+TG GK+TQIP+  ++      GF  I  TQPRR+
Sbjct: 72  NLPVSQKKQAIFDAISQHQVVIIAGETGSGKTTQIPKICLELGRGVKGF--IGHTQPRRL 129

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           A  S++ R+A E   +    VGY++RF     + T++  +T+G+LL
Sbjct: 130 AARSVASRLAQELECELGTNVGYKVRFSDQVSDTTQVKLMTDGILL 175



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176  AELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSR 235

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 236  HFGHAPIVEVSGRT 249


>gi|62127839|gb|AAX65542.1| helicase, ATP-dependent [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 1300

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFDN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF    E  R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQSHSE--RRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE  +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEYDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE  +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEYDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 240  HFDNAPIIEVSGRT 253


>gi|415841554|ref|ZP_11522625.1| ATP-dependent helicase HrpA [Escherichia coli RN587/1]
 gi|323187595|gb|EFZ72904.1| ATP-dependent helicase HrpA [Escherichia coli RN587/1]
          Length = 1281

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D+ L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDHLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D+ L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDHLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|417742671|ref|ZP_12391214.1| ATP-dependent helicase HrpA [Shigella flexneri 2930-71]
 gi|332767640|gb|EGJ97833.1| ATP-dependent helicase HrpA [Shigella flexneri 2930-71]
          Length = 1300

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|162139583|ref|YP_216623.2| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|375114532|ref|ZP_09759702.1| helicase, ATP-dependent [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SCSA50]
 gi|322714678|gb|EFZ06249.1| helicase, ATP-dependent [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SCSA50]
          Length = 1281

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFDN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF    E  R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQSHSE--RRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE  +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEYDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 510 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE  +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEYDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 160



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 221  HFDNAPIIEVSGRT 234


>gi|357146579|ref|XP_003574042.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like
           [Brachypodium distachyon]
          Length = 869

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 158/454 (34%), Positives = 247/454 (54%), Gaps = 27/454 (5%)

Query: 323 LVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGR 382
           L++DEIHER ++ DFL+ +++ LL    +++++LMSATIN ELF  YF   A I+ +PG 
Sbjct: 253 LLVDEIHERGMNEDFLIIILRDLLPRRPDLRLVLMSATINAELFSKYFGE-APIMHIPGF 311

Query: 383 LYPI-QLEYHPIVELDRTK------------------SEKLDP-GPYIRILSIIDKKYPR 422
            +PI +L    I+E  R K                  S K DP      +   I+     
Sbjct: 312 TFPIAELFLEDILEKTRYKIKSERDNFQGNSRRKRFASVKNDPISDVFEVEGTIEYICRH 371

Query: 423 TERGDVLIFMSGISEISSIVRAAQEYN--EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL 480
              G +L+F++G  EIS +V   +  N    S  ++VLPLH ++    Q  +F  AP  +
Sbjct: 372 DGEGAILVFLTGWDEISKLVDKIKGNNLLGNSNKFLVLPLHGSMPTVNQREIFDKAPTNM 431

Query: 481 RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540
           RK +++TNIAE+SITID + +V+D GK KE SYD   K++ L   WISKASA QR+GRAG
Sbjct: 432 RKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLMPSWISKASAHQRRGRAG 491

Query: 541 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPA 598
           R  PGVCYRLY +  +  + ++  PEI R  +  L L++  + LG V  F    L+ P  
Sbjct: 492 RVQPGVCYRLYPKVIHDAMPQFQLPEILRTPLQELCLTIKSLQLGAVASFLAKSLQPPDP 551

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
            ++++++  L   GA+D  E +T LG+ L  LP+D  +GKML+ GS+F  +D  L++AA 
Sbjct: 552 LSVKNAIELLKTIGALDDLEELTYLGQHLCTLPLDPNIGKMLLIGSVFQCLDPALTIAAA 611

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNH-GDPLTVLNAYKEWLGVKKDRVRSKKWCKRRG 717
           L+ ++PF     R  + +  ++    +   D + +L A++ W   K    R + +C    
Sbjct: 612 LAYRNPFVLPIDRKEEADAVKRSFAGDSCSDHIALLKAFEAWKDAKHSG-RERSFCWENF 670

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDA 751
           +       +  +R+QF  +L D G ++   G  A
Sbjct: 671 LSPMTLKMMDDMRNQFFDLLSDIGFVSKTRGVKA 704



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 7/109 (6%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR-------IACTQPRR 90
           LP  + ++E +  V   +V++I+G+TGCGK+TQ+PQ++++            I CTQPRR
Sbjct: 134 LPAFKMREEFLKAVASNQVLVISGETGCGKTTQLPQFILEEEIDNLRGADCSIICTQPRR 193

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           I+ IS++ RV  E   +    VGYQIR E  R  +T+++F T G+LLR+
Sbjct: 194 ISAISVAARVGSERGEELGETVGYQIRLESKRSTQTRLLFCTTGVLLRK 242



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 7/142 (4%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPA 866
           R  PGVCYRLY +  +  + ++  PEI R  +  L L++  + LG V  F    L+ P  
Sbjct: 492 RVQPGVCYRLYPKVIHDAMPQFQLPEILRTPLQELCLTIKSLQLGAVASFLAKSLQPPDP 551

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
            ++++++  L   GA+D  E +T LG+ L  LP+D  +GKML+ GS+F  +D  L +  A
Sbjct: 552 LSVKNAIELLKTIGALDDLEELTYLGQHLCTLPLDPNIGKMLLIGSVFQCLDPALTIAAA 611

Query: 927 LNFG-----AIDSKERVTSLGR 943
           L +       ID KE   ++ R
Sbjct: 612 LAYRNPFVLPIDRKEEADAVKR 633



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 50/233 (21%)

Query: 1023 LDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN---- 1078
            ++L    GA+D  E +T LG+ L  LP+D  +GKML+ GS+F  +D  L +  AL     
Sbjct: 558  IELLKTIGALDDLEELTYLGQHLCTLPLDPNIGKMLLIGSVFQCLDPALTIAAALAYRNP 617

Query: 1079 FVHHSEEEEEEEAGER----------LESMDANEVEFRLKHDPKQVQVAADNFLSSYDVL 1128
            FV   + +EE +A +R          +  + A E     KH  ++     +NFLS   + 
Sbjct: 618  FVLPIDRKEEADAVKRSFAGDSCSDHIALLKAFEAWKDAKHSGRERSFCWENFLSPMTLK 677

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTA 1188
            ++D++  R+   D L               I  +S T  ++ ++ Y              
Sbjct: 678  MMDDM--RNQFFDLL-------------SDIGFVSKTRGVKAYNHY-------------- 708

Query: 1189 RSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSV 1241
               KD+ ++  +L +GLYP V         +  K   F+ KD G V +HP SV
Sbjct: 709  --GKDLEMVSAVLCAGLYPNV-----IQCKKRGKRTAFYTKDVGKVDIHPSSV 754



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 37/48 (77%)

Query: 1128 LVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            L++DEIHER ++ DFL+ +++ LL    +++++LMSATIN ELF  YF
Sbjct: 253  LLVDEIHERGMNEDFLIIILRDLLPRRPDLRLVLMSATINAELFSKYF 300


>gi|312971579|ref|ZP_07785754.1| ATP-dependent helicase HrpA [Escherichia coli 1827-70]
 gi|310336176|gb|EFQ01376.1| ATP-dependent helicase HrpA [Escherichia coli 1827-70]
          Length = 1281

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|417712272|ref|ZP_12361264.1| ATP-dependent helicase HrpA [Shigella flexneri K-272]
 gi|417716881|ref|ZP_12365804.1| ATP-dependent helicase HrpA [Shigella flexneri K-227]
 gi|333007232|gb|EGK26718.1| ATP-dependent helicase HrpA [Shigella flexneri K-272]
 gi|333019280|gb|EGK38565.1| ATP-dependent helicase HrpA [Shigella flexneri K-227]
          Length = 1281

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L+ +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLSFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|260776112|ref|ZP_05885007.1| ATP-dependent helicase HrpA [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607335|gb|EEX33600.1| ATP-dependent helicase HrpA [Vibrio coralliilyticus ATCC BAA-450]
          Length = 1317

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 146/393 (37%), Positives = 231/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 192 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 251

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 252 HFSD-APIIEVSGRTYPVETRYRPLRGDDDVDRDQLE-GIFDAVDELCDEGL-----GDI 304

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 305 LIFMNGEREIRDTADALAKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 360

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 361 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 420

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 421 RLYSEDDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 480

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D K+R+TS+GR L+ LP+D  L +M++    +  +  V+ +A+ LS+Q 
Sbjct: 481 EELGAINENAKDPKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMVIASALSIQD 540

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   K       D LT +N +
Sbjct: 541 PRERPSDKQQSSDDKHKRFFHEESDFLTFVNLW 573



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 83/135 (61%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 412 GRVEEGICIRLYSEDDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T++GR L+ LP+D  L +M++    +  +  +++
Sbjct: 472 NIQDGVRLLEELGAINENAKDPKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMV 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 83/138 (60%), Gaps = 7/138 (5%)

Query: 4   ALYEEWKL-LLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGD 62
           A+++E  L + ++ +D +Q+  +   ++  E    LPV+Q + +I   +   +VVI+AG+
Sbjct: 57  AVFDEIALDIAKSMMDVEQRASYKPTIEYPEI---LPVSQKRDDIAKAIENNQVVIVAGE 113

Query: 63  TGCGKSTQIPQYLVQAG---FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE 119
           TG GK+TQ+P+   + G   +  I  TQPRR+A  S++ R+A E  ++    VGY++RF 
Sbjct: 114 TGSGKTTQLPKICAELGRGQYGLIGHTQPRRLAARSVANRIAEEMETKLGEFVGYKVRFN 173

Query: 120 KHRREKTKIVFITEGLLL 137
               + T+I  +T+G+LL
Sbjct: 174 DQISDNTQIKLMTDGILL 191



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 192  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 251

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 252  HFSDAPIIEVSGRT 265



 Score = 40.0 bits (92), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 184 RKMLKADNAYEIEEEEEEEEGE------RLESMDANEVEFRLKHDPKQV-QVATDNFLSS 236
           R++     A  I EE E + GE      R     ++  + +L  D   + ++  D FL+ 
Sbjct: 143 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISDNTQIKLMTDGILLAEIQHDRFLNQ 202

Query: 237 YDILILDEVHERHLYGDFLLGVI 259
           YD +I+DE HER L  DF+LG +
Sbjct: 203 YDTIIIDEAHERSLNIDFILGYL 225


>gi|450188339|ref|ZP_21890164.1| ATP-dependent helicase HrpA [Escherichia coli SEPT362]
 gi|449322798|gb|EMD12778.1| ATP-dependent helicase HrpA [Escherichia coli SEPT362]
          Length = 1281

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESSGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|331682860|ref|ZP_08383479.1| ATP-dependent helicase HrpA [Escherichia coli H299]
 gi|331080491|gb|EGI51670.1| ATP-dependent helicase HrpA [Escherichia coli H299]
          Length = 1300

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESSGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|388477492|ref|YP_489680.1| ATP-dependent helicase [Escherichia coli str. K-12 substr. W3110]
 gi|417612760|ref|ZP_12263223.1| ATP-dependent helicase HrpA [Escherichia coli STEC_EH250]
 gi|417617927|ref|ZP_12268353.1| ATP-dependent helicase HrpA [Escherichia coli G58-1]
 gi|417634310|ref|ZP_12284524.1| ATP-dependent helicase HrpA [Escherichia coli STEC_S1191]
 gi|418302685|ref|ZP_12914479.1| ATP-dependent helicase HrpA [Escherichia coli UMNF18]
 gi|419813042|ref|ZP_14337900.1| ATP-dependent RNA helicase HrpA [Escherichia coli O32:H37 str. P4]
 gi|450243193|ref|ZP_21899955.1| ATP-dependent RNA helicase HrpA [Escherichia coli S17]
 gi|1742304|dbj|BAA15029.1| ATP-dependent helicase [Escherichia coli str. K12 substr. W3110]
 gi|339414783|gb|AEJ56455.1| ATP-dependent helicase HrpA [Escherichia coli UMNF18]
 gi|345363927|gb|EGW96066.1| ATP-dependent helicase HrpA [Escherichia coli STEC_EH250]
 gi|345379390|gb|EGX11304.1| ATP-dependent helicase HrpA [Escherichia coli G58-1]
 gi|345387801|gb|EGX17612.1| ATP-dependent helicase HrpA [Escherichia coli STEC_S1191]
 gi|359331945|dbj|BAL38392.1| ATP-dependent helicase [Escherichia coli str. K-12 substr. MDS42]
 gi|385154139|gb|EIF16157.1| ATP-dependent RNA helicase HrpA [Escherichia coli O32:H37 str. P4]
 gi|449322444|gb|EMD12435.1| ATP-dependent RNA helicase HrpA [Escherichia coli S17]
          Length = 1281

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|419174690|ref|ZP_13718539.1| ATP-dependent helicase HrpA [Escherichia coli DEC7B]
 gi|378035569|gb|EHV98122.1| ATP-dependent helicase HrpA [Escherichia coli DEC7B]
          Length = 1300

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D+ L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDSLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 76/115 (66%), Gaps = 6/115 (5%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL---RQDSGLI 144
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL   +QDS L+
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDSLLM 189



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D+ L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDSLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|386619073|ref|YP_006138653.1| ATP-dependent helicase [Escherichia coli NA114]
 gi|432421691|ref|ZP_19664240.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE178]
 gi|432499841|ref|ZP_19741602.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE216]
 gi|432558565|ref|ZP_19795244.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE49]
 gi|432694232|ref|ZP_19929440.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE162]
 gi|432710394|ref|ZP_19945457.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE6]
 gi|432918846|ref|ZP_20123037.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE173]
 gi|432926635|ref|ZP_20128253.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE175]
 gi|432980886|ref|ZP_20169663.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE211]
 gi|433096300|ref|ZP_20282501.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE139]
 gi|433105615|ref|ZP_20291615.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE148]
 gi|333969574|gb|AEG36379.1| ATP-dependent helicase [Escherichia coli NA114]
 gi|430945325|gb|ELC65397.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE178]
 gi|431029835|gb|ELD42864.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE216]
 gi|431092262|gb|ELD97964.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE49]
 gi|431235084|gb|ELF30341.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE162]
 gi|431249964|gb|ELF44113.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE6]
 gi|431444939|gb|ELH25867.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE173]
 gi|431445829|gb|ELH26751.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE175]
 gi|431492650|gb|ELH72250.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE211]
 gi|431617550|gb|ELI86562.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE139]
 gi|431630413|gb|ELI98748.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE148]
          Length = 1300

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQQSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQAADEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQQSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|331672955|ref|ZP_08373733.1| ATP-dependent helicase HrpA [Escherichia coli TA280]
 gi|331069863|gb|EGI41240.1| ATP-dependent helicase HrpA [Escherichia coli TA280]
          Length = 1300

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I + +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDIFEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|157157344|ref|YP_001462688.1| ATP-dependent RNA helicase HrpA [Escherichia coli E24377A]
 gi|157079374|gb|ABV19082.1| ATP-dependent helicase HrpA [Escherichia coli E24377A]
          Length = 1300

 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDLLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|422836645|ref|ZP_16884686.1| ATP-dependent RNA helicase hrpA [Escherichia coli E101]
 gi|371608173|gb|EHN96733.1| ATP-dependent RNA helicase hrpA [Escherichia coli E101]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|254449173|ref|ZP_05062623.1| ATP-dependent helicase HrpA [gamma proteobacterium HTCC5015]
 gi|198261219|gb|EDY85514.1| ATP-dependent helicase HrpA [gamma proteobacterium HTCC5015]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 153/438 (34%), Positives = 245/438 (55%), Gaps = 25/438 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D FL  YD L++DE HER L+ DFLLG IK +L    ++K+I+ SATI+ E F  
Sbjct: 174 AETQGDRFLERYDTLIIDEAHERSLNIDFLLGYIKRILPRRPDLKVIITSATIDPERFSK 233

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRT--KSEKLDPGPYIRILSIIDKKYPRTERG 426
           +FN  A I+ V GR YP+++EY P+V+LD    +   L  G    +   +D+   +   G
Sbjct: 234 HFND-APILNVSGRTYPVEVEYRPLVDLDSDDERETSLRQG----VADCVDEAM-QNGPG 287

Query: 427 DVLIFMSGISEISSIVRAAQEY--NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           D+L+F+ G  +I    R  +++  + + Q   +LPL+  LS  EQ R+F  +  G R+ +
Sbjct: 288 DILVFLPGERDIRDTQRFLEKHFASRRGQSADILPLYGRLSNAEQQRIFKSS--GPRRIV 345

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           +STN+AETS+T+ GI FV+D+G  +   Y   +K+  L    IS+ASA QRKGR GR  P
Sbjct: 346 LSTNVAETSVTVPGIVFVIDTGLARVSRYSYRSKVQRLPIEAISQASANQRKGRCGRVAP 405

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G+CYRLYSE+ ++   E++ PEI R ++  ++L +  + LG++ +FPF+EAP +  I   
Sbjct: 406 GICYRLYSEDDFNARPEFTDPEILRTNLAEVILQMESLRLGEIEQFPFIEAPDSRLISDG 465

Query: 605 VRSLTQHGAID---SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            + L + GA+     + ++TSLG+ +S LP+D  L +ML+     + ++  L+L A LS+
Sbjct: 466 YKLLFELGAMSRQGKRHKLTSLGQKMSRLPIDPRLARMLMASDRENCLEETLTLVAALSI 525

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS------KKWCKR 715
           Q P           + A ++      D + +LN ++ +     +R R+      +KWC+ 
Sbjct: 526 QDPRERPHDHRQAADEAHQQWRDERSDFIALLNLWRHF----NERSRALSQNQLRKWCRE 581

Query: 716 RGIEEQRFYEVTKLRSQF 733
             +   R  E    R Q 
Sbjct: 582 NFLSWVRMREWRDTRRQL 599



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 79/133 (59%), Gaps = 5/133 (3%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PG+CYRLYSE+ ++   E++ PEI R ++  ++L +  + LG++ +FPF+EAP + 
Sbjct: 401 GRVAPGICYRLYSEDDFNARPEFTDPEILRTNLAEVILQMESLRLGEIEQFPFIEAPDSR 460

Query: 868 NIESSVRSLTQHGAID---SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLD 924
            I    + L + GA+     + ++T+LG+ +S LP+D  L +ML+     + ++  L L 
Sbjct: 461 LISDGYKLLFELGAMSRQGKRHKLTSLGQKMSRLPIDPRLARMLMASDRENCLEETLTLV 520

Query: 925 LALNFGAIDSKER 937
            AL+    D +ER
Sbjct: 521 AALSIQ--DPRER 531



 Score = 73.9 bits (180), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 75/128 (58%), Gaps = 7/128 (5%)

Query: 20  KQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ-- 77
           +++++ +  +   E    LP+   + +I+  + + +VV++ G+TG GK+TQ+P+  ++  
Sbjct: 53  QRRQQRAETLPTPEYDAQLPIVAARADILKAIEEHQVVVLCGETGSGKTTQLPKLCLELG 112

Query: 78  ---AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEG 134
              AG+  I  TQPRR+A  S++ R+A E  ++    VG+++RF     E + I  +T+G
Sbjct: 113 RGVAGY--IGHTQPRRLAARSVAARIAEELKTELGQGVGFKVRFADKVSELSHIKLMTDG 170

Query: 135 LLLRQDSG 142
           +LL +  G
Sbjct: 171 ILLAETQG 178



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D FL  YD L++DE HER L+ DFLLG IK +L    ++K+I+ SATI+ E F  
Sbjct: 174  AETQGDRFLERYDTLIIDEAHERSLNIDFLLGYIKRILPRRPDLKVIITSATIDPERFSK 233

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 234  HFNDAPILNVSGRT 247



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 21/34 (61%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            +   D FL  YD LI+DE HER L  DFLLG I
Sbjct: 174 AETQGDRFLERYDTLIIDEAHERSLNIDFLLGYI 207


>gi|417755396|ref|ZP_12403485.1| ATP-dependent helicase HrpA [Escherichia coli DEC2B]
 gi|418996502|ref|ZP_13544104.1| ATP-dependent helicase HrpA [Escherichia coli DEC1A]
 gi|419001794|ref|ZP_13549335.1| ATP-dependent helicase HrpA [Escherichia coli DEC1B]
 gi|419007274|ref|ZP_13554720.1| ATP-dependent helicase HrpA [Escherichia coli DEC1C]
 gi|419013196|ref|ZP_13560555.1| ATP-dependent helicase HrpA [Escherichia coli DEC1D]
 gi|419023668|ref|ZP_13570904.1| ATP-dependent helicase HrpA [Escherichia coli DEC2A]
 gi|419028571|ref|ZP_13575751.1| ATP-dependent helicase HrpA [Escherichia coli DEC2C]
 gi|419034339|ref|ZP_13581432.1| ATP-dependent helicase HrpA [Escherichia coli DEC2D]
 gi|419039311|ref|ZP_13586358.1| ATP-dependent helicase HrpA [Escherichia coli DEC2E]
 gi|377846076|gb|EHU11090.1| ATP-dependent helicase HrpA [Escherichia coli DEC1A]
 gi|377848309|gb|EHU13303.1| ATP-dependent helicase HrpA [Escherichia coli DEC1C]
 gi|377850635|gb|EHU15591.1| ATP-dependent helicase HrpA [Escherichia coli DEC1B]
 gi|377860056|gb|EHU24883.1| ATP-dependent helicase HrpA [Escherichia coli DEC1D]
 gi|377866467|gb|EHU31239.1| ATP-dependent helicase HrpA [Escherichia coli DEC2A]
 gi|377877349|gb|EHU41946.1| ATP-dependent helicase HrpA [Escherichia coli DEC2B]
 gi|377881981|gb|EHU46535.1| ATP-dependent helicase HrpA [Escherichia coli DEC2C]
 gi|377882144|gb|EHU46695.1| ATP-dependent helicase HrpA [Escherichia coli DEC2D]
 gi|377896045|gb|EHU60451.1| ATP-dependent helicase HrpA [Escherichia coli DEC2E]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|386623973|ref|YP_006143701.1| putative ATP-dependent helicase [Escherichia coli O7:K1 str. CE10]
 gi|349737711|gb|AEQ12417.1| putative ATP-dependent helicase [Escherichia coli O7:K1 str. CE10]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|422781704|ref|ZP_16834489.1| ATP-dependent helicase HrpA [Escherichia coli TW10509]
 gi|323976943|gb|EGB72030.1| ATP-dependent helicase HrpA [Escherichia coli TW10509]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|331657417|ref|ZP_08358379.1| ATP-dependent helicase HrpA [Escherichia coli TA206]
 gi|331055665|gb|EGI27674.1| ATP-dependent helicase HrpA [Escherichia coli TA206]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISHYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432850252|ref|ZP_20081114.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE144]
 gi|431400597|gb|ELG83965.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE144]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|352106213|ref|ZP_08961264.1| ATP-dependent helicase HrpA [Halomonas sp. HAL1]
 gi|350597861|gb|EHA13986.1| ATP-dependent helicase HrpA [Halomonas sp. HAL1]
          Length = 1308

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/463 (34%), Positives = 259/463 (55%), Gaps = 41/463 (8%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+++ F  
Sbjct: 162 AETQHDPLLLRYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKIIITSATIDVDRFAK 221

Query: 369 YFNRI---AKIIKVPGRLYPIQLEYHPIV-----ELDRTKSEKLDPGPYIRILSIIDKKY 420
           +F      A +++V GR YP+++ Y P++     E DRT  E +       + ++ + + 
Sbjct: 222 HFGTATTPAPVVEVTGRTYPVEVHYRPLIRDDEDEEDRTLQEGI-------LHAVGEIEA 274

Query: 421 PRTERG------DVLIFMSG---ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471
              E+G      DVL+F+ G   I E + I+R A       +G  +LPL++ LS EEQ+R
Sbjct: 275 IEREKGWLHGPRDVLVFLPGEREIRETADILRRAD-----LKGTEILPLYARLSNEEQNR 329

Query: 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKAS 531
           VF  AP   R+ +++TN+AETS+T+ GIR+V+D G V+   Y   +K+  L    +S+AS
Sbjct: 330 VF--APHRGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRSKIQRLPVEAVSQAS 387

Query: 532 AEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFP 591
           A QRKGR GR   GVC RLYSEE +     ++ PEI+R ++ S++LS++ + LGD+  FP
Sbjct: 388 ANQRKGRCGRIAEGVCIRLYSEEDFLSRPGFTDPEIQRTNLASVILSMLGLKLGDIEAFP 447

Query: 592 FLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDT 651
           F++ P +  ++   R L + GA+D ++ ++ LGR L+ LP+D  L +M++ G+ F  +  
Sbjct: 448 FVDPPDSRFVKDGFRLLFELGAVDERQHLSPLGRKLARLPIDPRLARMVLAGAEFGSLRD 507

Query: 652 VLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDR----- 706
           VL + + L++Q P    A +    + A +       D + +LN    W G++  R     
Sbjct: 508 VLIVVSALAIQDPRDRPADKRQAADQAHQRWHDPDSDFVALLNL---WHGIENAREALSG 564

Query: 707 VRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGP 749
            + ++WC+   I   R  E      Q +Q+L D  +  D+P P
Sbjct: 565 NQLRRWCRDHYINYLRMREWHDTFRQLRQLLRDMDI--DVPAP 605



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 76/120 (63%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLYSEE +     ++ PEI+R ++ S++LS++ + LGD+  FPF++ P + 
Sbjct: 396 GRIAEGVCIRLYSEEDFLSRPGFTDPEIQRTNLASVILSMLGLKLGDIEAFPFVDPPDSR 455

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            ++   R L + GA+D ++ ++ LGR L+ LP+D  L +M++ G+ F  +  +L++  AL
Sbjct: 456 FVKDGFRLLFELGAVDERQHLSPLGRKLARLPIDPRLARMVLAGAEFGSLRDVLIVVSAL 515



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 12/133 (9%)

Query: 17  LDFKQKE--KFSTLMKIRETQN-------SLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           LD  Q+E  +    + +RETQ         LPV + K++I++ +   +VV++AG+TG GK
Sbjct: 29  LDEVQRELDRSQQQLSLRETQQVALNYPPELPVVERKEDIVNAIRDHQVVVVAGETGSGK 88

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQ+P+  ++ G  R   I  TQPRR+A  S++ R+A E      + VGYQ+RF      
Sbjct: 89  TTQLPKMCLELGRGRRGLIGHTQPRRLAARSVAGRLAEELQVSLGDQVGYQVRFTDQSSP 148

Query: 125 KTKIVFITEGLLL 137
            T +  +T+G+LL
Sbjct: 149 STLVKLMTDGILL 161



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+++ F  +F 
Sbjct: 167  DPLLLRYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKIIITSATIDVDRFAKHFG 224


>gi|432542870|ref|ZP_19779721.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE236]
 gi|432548345|ref|ZP_19785129.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE237]
 gi|432621623|ref|ZP_19857659.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE76]
 gi|432792627|ref|ZP_20026714.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE78]
 gi|432798587|ref|ZP_20032611.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE79]
 gi|431075625|gb|ELD83145.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE236]
 gi|431083114|gb|ELD89425.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE237]
 gi|431160368|gb|ELE60878.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE76]
 gi|431340560|gb|ELG27588.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE78]
 gi|431344738|gb|ELG31676.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE79]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q K++I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKKDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|119184757|ref|XP_001243247.1| hypothetical protein CIMG_07143 [Coccidioides immitis RS]
 gi|392866135|gb|EAS28747.2| ATP dependent RNA helicase [Coccidioides immitis RS]
          Length = 669

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 165/471 (35%), Positives = 254/471 (53%), Gaps = 38/471 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  LS Y V+++DE HER L  D LLG++K ++    E++II+ SAT+  E F  +
Sbjct: 127 EALVDPLLSRYSVIMVDEAHERSLSTDILLGILKKIMKKRPELRIIVSSATLQAEEFLRF 186

Query: 370 F--------------NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI 415
           F               ++ +I+ + GR+YP+   +     L+    + ++      I ++
Sbjct: 187 FAEDQFNAENGSEMGGKVGRILSLEGRMYPVDCLF-----LESPAEDYVERA----IKTV 237

Query: 416 IDKKYPRTERGDVLIFMSGISEI----SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471
            D     T  GD+L+F++G  EI      I   A     KSQ  + LPL++ L+ E+Q  
Sbjct: 238 FDIHVGETN-GDILLFLTGREEIDLAIQKISERAATLPPKSQELLPLPLYAGLTTEQQLY 296

Query: 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKAS 531
           VF  APE  RK IV+TNIAE S+TIDGI FV+D G  K  +YD    + TL    ISKAS
Sbjct: 297 VFDPAPENTRKVIVATNIAEASVTIDGIVFVIDCGYAKLRAYDPNTGIDTLTAVPISKAS 356

Query: 532 AEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFP 591
           A QR GRAGRT PG C+ LY+EE Y+ L + S PEI+R ++  ++L L  +G+ ++ +F 
Sbjct: 357 ASQRAGRAGRTRPGKCFHLYTEESYACLPDASVPEIQRSNLAPVILQLKALGIDNIVRFD 416

Query: 592 FLEAPPAENIESSVRSLTQHGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQID 650
           F   PPAE +  ++  L   GA+D   ++T  LG  +++L VD  + K+L+  S F  + 
Sbjct: 417 FFSTPPAELVVRALELLYSLGAVDEYAKLTKPLGIHMAELSVDPMMAKVLLNASTFGCLS 476

Query: 651 TVLSLAAVLSVQ-SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS 709
            +LS+AA+ SVQ S +  +       E+AR++     GD LT LN Y  ++   K   + 
Sbjct: 477 EILSIAAMTSVQGSVWFQQEGEKKGMESARRKFAVEEGDHLTYLNVYHAFVTKGK---KD 533

Query: 710 KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERAL 760
            KWC+   +  +   +   +R+Q K+ L   G+       D +LSSR+  +
Sbjct: 534 SKWCRENSLNYKSMQKAVSIRAQLKRYLDRFGIQI-----DETLSSRKSQM 579



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 1/114 (0%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT PG C+ LY+EE Y+ L + S PEI+R ++  ++L L  +G+ ++ +F F   PPAE 
Sbjct: 366 RTRPGKCFHLYTEESYACLPDASVPEIQRSNLAPVILQLKALGIDNIVRFDFFSTPPAEL 425

Query: 869 IESSVRSLTQHGAIDSKERVTT-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           +  ++  L   GA+D   ++T  LG  +++L VD  + K+L+  S F  +  +L
Sbjct: 426 VVRALELLYSLGAVDEYAKLTKPLGIHMAELSVDPMMAKVLLNASTFGCLSEIL 479



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACTQPRRIAC 93
           LP+AQ++  ++  V    V I+ G TG GK+TQ+PQ+L +AG+    ++IA TQPRR+A 
Sbjct: 22  LPIAQHRNSLLYVVENYPVTIVVGQTGSGKTTQLPQFLDKAGWCADGKQIAVTQPRRVAA 81

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            +++ RVA E        VGY IRFE      T+I F+T+GLLLR+
Sbjct: 82  TTVAARVAEEMRCSVGQEVGYSIRFEDVTSSATRIKFLTDGLLLRE 127



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  LS Y V+++DE HER L  D LLG++K ++    E++II+ SAT+  E F  +F
Sbjct: 131  DPLLSRYSVIMVDEAHERSLSTDILLGILKKIMKKRPELRIIVSSATLQAEEFLRFF 187


>gi|418255495|ref|ZP_12879873.1| ATP-dependent helicase HrpA [Shigella flexneri 6603-63]
 gi|397898753|gb|EJL15134.1| ATP-dependent helicase HrpA [Shigella flexneri 6603-63]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|425081282|ref|ZP_18484379.1| ATP-dependent RNA helicase hrpA [Klebsiella pneumoniae subsp.
           pneumoniae WGLW2]
 gi|405602712|gb|EKB75835.1| ATP-dependent RNA helicase hrpA [Klebsiella pneumoniae subsp.
           pneumoniae WGLW2]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDALDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +  + T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|417689447|ref|ZP_12338679.1| ATP-dependent helicase HrpA [Shigella boydii 5216-82]
 gi|332091249|gb|EGI96338.1| ATP-dependent helicase HrpA [Shigella boydii 5216-82]
          Length = 1281

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR+GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRSGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I + +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDIREAIRDHQVVIVAGETGSGKTTQLPKICIELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|227886197|ref|ZP_04004002.1| HrpA family ATP-dependent helicase [Escherichia coli 83972]
 gi|386638934|ref|YP_006105732.1| ATP-dependent helicase HrpA [Escherichia coli ABU 83972]
 gi|227836862|gb|EEJ47328.1| HrpA family ATP-dependent helicase [Escherichia coli 83972]
 gi|307553426|gb|ADN46201.1| ATP-dependent helicase HrpA [Escherichia coli ABU 83972]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|124802732|ref|XP_001347578.1| RNA helicase, putative [Plasmodium falciparum 3D7]
 gi|23495160|gb|AAN35491.1|AE014833_62 RNA helicase, putative [Plasmodium falciparum 3D7]
          Length = 1290

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 151/430 (35%), Positives = 245/430 (56%), Gaps = 21/430 (4%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E  +D  L+ Y  ++LDE HER +  D L  ++K ++   A+ K+I+ SAT++ E F TY
Sbjct: 735  ETLSDTLLTKYSFIILDEAHERTISTDILFCLLKDVVRKRADFKLIVTSATLDAEKFSTY 794

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   + I  +PG+++P+++ +    E D  ++        I +L+I   ++P    GD+L
Sbjct: 795  FFN-SPIFTIPGKIFPVEILHSKEPESDYVEAS------LITVLNIHLNEHP----GDIL 843

Query: 430  IFMSGISEISSIVRAAQEYNEKSQGW-----IVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI++      E  +K +       I+LP++S+L  E Q  +F  AP G RKCI
Sbjct: 844  VFLTGQDEINTACEILHERMKKLESMSPPPLIILPIYSSLPSEMQSVIFEPAPPGCRKCI 903

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAE S+TIDGI FV+D G  K   YD    M +L    ISKA+A+QR GRAGRTGP
Sbjct: 904  LATNIAEASLTIDGIFFVIDPGFCKIKKYDSKRDMDSLIVAPISKANAKQRAGRAGRTGP 963

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+EE Y + ++E S PEI+R+++ S++L L  +G+ D   F F+++P  E +  
Sbjct: 964  GKCYRLYTEEAYKNEMSEMSVPEIQRINLGSIVLLLKALGINDFLHFDFMDSPSVETLIH 1023

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            S+ +L   GA+D    +T LG+ +++ P++  L K+L+    F+  D V+++ ++LSVQ+
Sbjct: 1024 SLENLYYLGALDDNGYLTKLGKKMANFPMEPNLSKILLTSLNFNCTDDVVTIVSMLSVQN 1083

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD +T LN Y +W    K+   S  WC    I+ +  
Sbjct: 1084 IFYRPQNKALLADKKKNKFIMPQGDLITYLNIYNKW----KENSFSNYWCHENFIQSRAL 1139

Query: 724  YEVTKLRSQF 733
                 +R Q 
Sbjct: 1140 KRAQDVRKQM 1149



 Score = 97.1 bits (240), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EWK   + Y +          + I E ++ LP+   K +++  + K  V+I+ G+TG GK
Sbjct: 604 EWK---KNYNNNNISVGVKNTLPINEQRSKLPIYNLKNDLMKAIEKNNVLIVIGETGSGK 660

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQIPQYL +A +     + CTQPRR+A +S++KRV+ E        VGY IRF+     
Sbjct: 661 TTQIPQYLHEANYTEKGIVGCTQPRRVAAMSIAKRVSEEFGCILGQEVGYSIRFDDCTSN 720

Query: 125 KTKIVFITEGLLLRQ 139
            T I ++T+G+LLR+
Sbjct: 721 DTIIKYLTDGMLLRE 735



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 74/116 (63%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+EE Y + ++E S PEI+R+++ S++L L  +G+ D   F F+++P  E
Sbjct: 960  RTGPGKCYRLYTEEAYKNEMSEMSVPEIQRINLGSIVLLLKALGINDFLHFDFMDSPSVE 1019

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             +  S+ +L   GA+D    +T LG+ +++ P++  L K+L+    F+  D ++ +
Sbjct: 1020 TLIHSLENLYYLGALDDNGYLTKLGKKMANFPMEPNLSKILLTSLNFNCTDDVVTI 1075



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            +  +D  L+ Y  ++LDE HER +  D L  ++K ++   A+ K+I+ SAT++ E F TY
Sbjct: 735  ETLSDTLLTKYSFIILDEAHERTISTDILFCLLKDVVRKRADFKLIVTSATLDAEKFSTY 794

Query: 1175 F 1175
            F
Sbjct: 795  F 795


>gi|432815059|ref|ZP_20048846.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE115]
 gi|431364891|gb|ELG51411.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE115]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432749833|ref|ZP_19984444.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE29]
 gi|431298385|gb|ELF88018.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE29]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T+LGR LS LPVD  + +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTALGRQLSQLPVDPRMARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  + +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTALGRQLSQLPVDPRMARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432601949|ref|ZP_19838196.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE66]
 gi|431142883|gb|ELE44631.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE66]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  +  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDYVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|384543421|ref|YP_005727484.1| ATP-dependent helicase HrpA [Shigella flexneri 2002017]
 gi|420341425|ref|ZP_14842929.1| ATP-dependent helicase HrpA [Shigella flexneri K-404]
 gi|281601207|gb|ADA74191.1| ATP-dependent helicase HrpA [Shigella flexneri 2002017]
 gi|391270483|gb|EIQ29373.1| ATP-dependent helicase HrpA [Shigella flexneri K-404]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432674385|ref|ZP_19909869.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE142]
 gi|431216364|gb|ELF14003.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE142]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQTSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQTSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|428931734|ref|ZP_19005325.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae JHCK1]
 gi|426307788|gb|EKV69863.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae JHCK1]
          Length = 1281

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDALDE-LGREGPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +  + T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGL 591



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 160



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|419924887|ref|ZP_14442756.1| ATP-dependent RNA helicase HrpA [Escherichia coli 541-15]
 gi|388388620|gb|EIL50186.1| ATP-dependent RNA helicase HrpA [Escherichia coli 541-15]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|348541251|ref|XP_003458100.1| PREDICTED: putative ATP-dependent RNA helicase DHX33-like
           [Oreochromis niloticus]
          Length = 681

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 159/468 (33%), Positives = 259/468 (55%), Gaps = 32/468 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E   D  L  Y V+VLDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 152 EAIGDPLLLRYTVVVLDEAHERTVHTDVLFGVVKTAQRRRKELNKIPLKVIVMSATMDVD 211

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSIIDKKYPR 422
           LF  YFN+ + ++ + GR +PIQ+ Y        TK  + D   Y++  ++SI       
Sbjct: 212 LFSEYFNK-SPVLYLEGRQHPIQIYY--------TKQPQSD---YLQAALVSIFQIHQEA 259

Query: 423 TERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               D+L+FM+G  EI ++ R     A+   +     +V+PL+++L   +Q RVF  AP+
Sbjct: 260 PSSHDILVFMTGQEEIEALARTCRDIAKHLPDGCGPMVVIPLYASLPPTQQLRVFLPAPK 319

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
           G RK I+STNIAETS+TI GI++V+D+G VK   ++  + +  L    +SKA A QR GR
Sbjct: 320 GCRKVILSTNIAETSVTISGIKYVIDTGMVKAKRFNPDSGLEVLAVQRVSKAQAWQRAGR 379

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
           AGR   G CYRLY+E+++  L   + PEI+R ++  ++L L+ +G+ DV  F F+  P  
Sbjct: 380 AGREDSGFCYRLYTEQEFDNLIPMTVPEIQRCNLAGVMLQLMALGIPDVTNFDFMSKPSP 439

Query: 599 ENIESSVRSLTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           E I S+V  L   GA++ K+    +T+LG+ ++  P++    K ++    +   + +LS+
Sbjct: 440 EAIRSAVDHLELLGAVEKKDGQVFLTTLGKKMASFPLEPRYAKTILLSPDYSCSEEILSI 499

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKR 715
            ++LSV +   N   R  D    RK+  S+ GD +T+LN Y+ +  V  +    K+WC+ 
Sbjct: 500 VSLLSVDTVLYNPPARRDDVLAVRKKFMSSEGDHMTLLNIYRAFKKVSGN----KEWCRE 555

Query: 716 RGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHG 763
             +  +    V ++++Q K++     L  +  G D   +S  R L HG
Sbjct: 556 NFVNSRNMGLVKEVQAQLKEICLKLNLKLESCGADT--ASVRRCLAHG 601



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 73/111 (65%), Gaps = 3/111 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           +  LP+ Q K +++  + +    I+ G+TG GK+TQIPQYL +AG  R   IA TQPRR+
Sbjct: 45  RKQLPIYQAKPQLLTQLRQLHGAILIGETGSGKTTQIPQYLYEAGIGRLGMIAVTQPRRV 104

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
           A ISL+ RVA E  +Q   LVGY +RFE     +TK+ F+T+G+LLR+  G
Sbjct: 105 AAISLAGRVAEEKRTQLGKLVGYTVRFEDVTSPETKLKFMTDGMLLREAIG 155



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 3/106 (2%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G CYRLY+E+++  L   + PEI+R ++  ++L L+ +G+ DV  F F+  P  E
Sbjct: 381 GREDSGFCYRLYTEQEFDNLIPMTVPEIQRCNLAGVMLQLMALGIPDVTNFDFMSKPSPE 440

Query: 868 NIESSVRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVF 910
            I S+V  L   GA++ K+    +TTLG+ ++  P++    K ++ 
Sbjct: 441 AIRSAVDHLELLGAVEKKDGQVFLTTLGKKMASFPLEPRYAKTILL 486



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 12/114 (10%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      EE+  + G+      R E + + E + +   D   ++ A  D  L  Y V+
Sbjct: 106  AISLAGRVAEEKRTQLGKLVGYTVRFEDVTSPETKLKFMTDGMLLREAIGDPLLLRYTVV 165

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHTYFNR 1177
            VLDE HER +H D L GV+K       E     +K+I+MSAT++++LF  YFN+
Sbjct: 166  VLDEAHERTVHTDVLFGVVKTAQRRRKELNKIPLKVIVMSATMDVDLFSEYFNK 219


>gi|433197998|ref|ZP_20381914.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE94]
 gi|431723935|gb|ELJ87879.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE94]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|424816354|ref|ZP_18241505.1| ATP-dependent helicase HrpA [Escherichia fergusonii ECD227]
 gi|325497374|gb|EGC95233.1| ATP-dependent helicase HrpA [Escherichia fergusonii ECD227]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +G+++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGFKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|420335770|ref|ZP_14837375.1| ATP-dependent helicase HrpA [Shigella flexneri K-315]
 gi|391264907|gb|EIQ23889.1| ATP-dependent helicase HrpA [Shigella flexneri K-315]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  +QPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHSQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|388601735|ref|ZP_10160131.1| ATP-dependent RNA helicase HrpA [Vibrio campbellii DS40M4]
          Length = 1278

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 229/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+      I   +D+       GD+
Sbjct: 221 HFNN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLEG-----IFEAVDELCAEG-LGDI 273

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 274 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHTGRRIVLATN 329

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 330 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 389

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 390 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPNKRNIQDGVRLL 449

Query: 609 TQHGAID-----SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI+     SK+R+TS+GR L+ LP+D  L +M++       +  V+ +AA LS+Q 
Sbjct: 450 EELGAINSDAKESKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMIIAAALSIQD 509

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   K       D LT +N +
Sbjct: 510 PRERPSDKQQSSDDKHKRFFHEDSDFLTFVNLW 542



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 381 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPNKR 440

Query: 868 NIESSVRSLTQHGAID-----SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI+     SK+R+T++GR L+ LP+D  L +M++       +  +++
Sbjct: 441 NIQDGVRLLEELGAINSDAKESKKRLTSIGRQLARLPIDPRLARMVLESPKQGALKEVMI 500

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 501 IAAALSIQ--DPRER 513



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 58  LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 160



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234



 Score = 40.0 bits (92), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 194


>gi|416816981|ref|ZP_11892575.1| ATP-dependent RNA helicase HrpA [Escherichia coli O55:H7 str.
           3256-97]
 gi|419120104|ref|ZP_13665075.1| ATP-dependent helicase HrpA [Escherichia coli DEC5B]
 gi|320653339|gb|EFX21476.1| ATP-dependent RNA helicase HrpA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|377969629|gb|EHV33005.1| ATP-dependent helicase HrpA [Escherichia coli DEC5B]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|212711878|ref|ZP_03320006.1| hypothetical protein PROVALCAL_02953 [Providencia alcalifaciens DSM
           30120]
 gi|212685400|gb|EEB44928.1| hypothetical protein PROVALCAL_02953 [Providencia alcalifaciens DSM
           30120]
          Length = 1299

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 155/453 (34%), Positives = 245/453 (54%), Gaps = 24/453 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176 AELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSR 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRTERG 426
           +F   A I++V GR YP+++ Y PI+  D             +I  IID   +  R   G
Sbjct: 236 HFGH-APIVEVSGRTYPVEVRYRPIMGDDNDSDRD-------QIDGIIDAVNELGRESAG 287

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFMSG  EI     A  +   +     +LPL + LS  EQ+R+FH  P G R+ I++
Sbjct: 288 DILIFMSGEREIRDTADALSKLQLRHTE--ILPLFARLSNSEQNRIFH--PHGGRRIILA 343

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D+G  +   Y    K+  L    IS+ASA QRKGR GR   G+
Sbjct: 344 TNVAETSLTVPGIKYVIDTGYARISRYSYRTKVQRLPVEAISQASANQRKGRCGRVSDGI 403

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V+
Sbjct: 404 CIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTSIGLGDIAAFPFVEAPDKRNIQDGVK 463

Query: 607 SLTQ------HGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            L +      H  +D   R+T +GR L+ LPVD  L +M++    +  +   + + + LS
Sbjct: 464 LLEELGGIQPHKEVDKGYRLTDIGRQLAQLPVDPRLARMVIEARKYGAVRETMVIVSALS 523

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  LN + ++L  +++ + +   +K C++  
Sbjct: 524 IQDPRERPLDKQQASDEKHRRFHDKQSDFLAFLNLW-DYLKQQQEELSNAQFRKMCRQDF 582

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
           +   R  E   L +Q +QV+ + G   +    D
Sbjct: 583 LNYLRIREWQDLYTQLRQVVKEQGFAINSAAAD 615



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 77/136 (56%), Gaps = 8/136 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 397 GRVSDGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTSIGLGDIAAFPFVEAPDKR 456

Query: 868 NIESSVRSLTQ------HGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           NI+  V+ L +      H  +D   R+T +GR L+ LPVD  L +M++    +  +   +
Sbjct: 457 NIQDGVKLLEELGGIQPHKEVDKGYRLTDIGRQLAQLPVDPRLARMVIEARKYGAVRETM 516

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 517 VIVSALSIQ--DPRER 530



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 7/106 (6%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ-----AGFQRIACTQPRRI 91
           +LPV+Q KQ I D + + +VVIIAG+TG GK+TQIP+  ++      GF  I  TQPRR+
Sbjct: 72  NLPVSQKKQAIFDAISQHQVVIIAGETGSGKTTQIPKICLELGRGVKGF--IGHTQPRRL 129

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           A  S++ R+A E   +    VGY++RF     + T++  +T+G+LL
Sbjct: 130 AARSVASRLAQELECELGTNVGYKVRFSDQVSDTTQVKLMTDGILL 175



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176  AELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSR 235

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 236  HFGHAPIVEVSGRT 249


>gi|420320382|ref|ZP_14822219.1| ATP-dependent helicase HrpA [Shigella flexneri 2850-71]
 gi|391250459|gb|EIQ09680.1| ATP-dependent helicase HrpA [Shigella flexneri 2850-71]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|417253744|ref|ZP_12045500.1| ATP-dependent helicase HrpA [Escherichia coli 4.0967]
 gi|419289298|ref|ZP_13831394.1| ATP-dependent helicase HrpA [Escherichia coli DEC11A]
 gi|419294551|ref|ZP_13836599.1| ATP-dependent helicase HrpA [Escherichia coli DEC11B]
 gi|378131797|gb|EHW93151.1| ATP-dependent helicase HrpA [Escherichia coli DEC11A]
 gi|378143500|gb|EHX04692.1| ATP-dependent helicase HrpA [Escherichia coli DEC11B]
 gi|386215671|gb|EII32163.1| ATP-dependent helicase HrpA [Escherichia coli 4.0967]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|422366632|ref|ZP_16447095.1| ATP-dependent helicase HrpA [Escherichia coli MS 153-1]
 gi|315290676|gb|EFU50048.1| ATP-dependent helicase HrpA [Escherichia coli MS 153-1]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|293409757|ref|ZP_06653333.1| ATP-dependent helicase HrpA [Escherichia coli B354]
 gi|291470225|gb|EFF12709.1| ATP-dependent helicase HrpA [Escherichia coli B354]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIPQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I + +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDIFEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIPQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|293433797|ref|ZP_06662225.1| ATP-dependent helicase HrpA [Escherichia coli B088]
 gi|291324616|gb|EFE64038.1| ATP-dependent helicase HrpA [Escherichia coli B088]
          Length = 1305

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 185 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 244

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 245 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 297

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 298 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 353

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 354 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 413

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 414 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 473

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 474 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 533

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 534 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 593 YLRVREWQDIYTQLRQVVKELGI 615



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 406 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 465

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 466 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 525

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 526 ITSALSIQ--DPRER 538



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 80  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 139

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 140 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 184



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 185  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 244

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 245  HFNNAPIIEVSGRT 258


>gi|432431559|ref|ZP_19673993.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE187]
 gi|432844099|ref|ZP_20077126.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE141]
 gi|433207507|ref|ZP_20391194.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE97]
 gi|430954131|gb|ELC73011.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE187]
 gi|431395524|gb|ELG79034.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE141]
 gi|431731203|gb|ELJ94711.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE97]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|417223086|ref|ZP_12026526.1| ATP-dependent helicase HrpA [Escherichia coli 96.154]
 gi|386202888|gb|EII01879.1| ATP-dependent helicase HrpA [Escherichia coli 96.154]
          Length = 1300

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|326778312|ref|ZP_08237577.1| ATP-dependent helicase HrpA [Streptomyces griseus XylebKG-1]
 gi|326658645|gb|EGE43491.1| ATP-dependent helicase HrpA [Streptomyces griseus XylebKG-1]
          Length = 1310

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 163/455 (35%), Positives = 247/455 (54%), Gaps = 22/455 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 177 AEIQTDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPRRPDLKVVITSATIDPERFAR 236

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDK---KYPRTER 425
           +F   A I++V GR YP+++ Y P++E D   SE  D      I   +D+   + P    
Sbjct: 237 HFGE-APIVEVSGRTYPVEVRYRPLLEED---SEDSDRDQITAICDAVDELGHEAP---- 288

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GDVL+F+SG  EI     A  + N +     VLPL++ LS  EQ RVF       R+ ++
Sbjct: 289 GDVLVFLSGEREIRDTADALNKRNLRHTE--VLPLYARLSHAEQHRVFQR--HTGRRIVL 344

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G
Sbjct: 345 ATNVAETSLTVPGIKYVIDPGNARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDG 404

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +   GLGD+ KFPF++ P   NI   V
Sbjct: 405 ICIRLYSEDDFVTRPEFTDPEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGV 464

Query: 606 RSLTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           + L + GA+     D K+R+T LGR LS LPVD  L +M++          V+ +AA LS
Sbjct: 465 QLLQELGALDPAEKDPKKRLTPLGRKLSQLPVDPRLARMVIEADRNGCAREVMVIAAALS 524

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGI 718
           +Q P    A +    +      +    D L  LN +      +K+R  S  ++ CK+  +
Sbjct: 525 IQDPRERPAEKQTQADQNHARFKDETSDFLAYLNLWAYVREQQKERGSSSFRRMCKQEYL 584

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASL 753
              R  E   + +Q + V    G+  + P  +AS+
Sbjct: 585 NFLRIREWQDIYAQLRTVAKQMGITVEEPKAEASI 619



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSE+ +    E++ PEI R ++ S++L +   GLGD+ KFPF++ P   
Sbjct: 399 GRTSDGICIRLYSEDDFVTRPEFTDPEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHR 458

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI   V+ L + GA+     D K+R+T LGR LS LPVD  L +M++          +++
Sbjct: 459 NIRDGVQLLQELGALDPAEKDPKKRLTPLGRKLSQLPVDPRLARMVIEADRNGCAREVMV 518

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 519 IAAALSIQ--DPRER 531



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 69/106 (65%), Gaps = 4/106 (3%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           + LPV+Q K EI++ +   +VVI+AG+TG GK+TQIP+  ++ G      I  TQPRRIA
Sbjct: 71  DELPVSQKKDEILEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGMIGHTQPRRIA 130

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLL 137
             ++++RVA E  +     VG+++RF ++   E T +  +T+G+LL
Sbjct: 131 ARTVAERVADELKTPLGETVGWKVRFTDQVNPESTYLKLMTDGILL 176



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 177  AEIQTDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPRRPDLKVVITSATIDPERFAR 236

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 237  HFGEAPIVEVSGRT 250


>gi|288941698|ref|YP_003443938.1| ATP-dependent helicase HrpA [Allochromatium vinosum DSM 180]
 gi|288897070|gb|ADC62906.1| ATP-dependent helicase HrpA [Allochromatium vinosum DSM 180]
          Length = 1323

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 156/445 (35%), Positives = 249/445 (55%), Gaps = 24/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 188 AEIQQDRWLNEYDTLIIDEAHERGLNIDFLLGYLKGLLPRRPDLKLIVTSATIDPERFAR 247

Query: 369 YF----NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424
           +F     R A II++ GR YP+++ Y P  E    + ++    P  R +S   ++  R  
Sbjct: 248 HFADSERRPAPIIEISGRTYPVEMRYRPPEEESAAECDE----PMQRAISEAVEELARVG 303

Query: 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           RGDVL+F+SG  EI +     ++++  S    +LPL +    +EQ R+F   P G R+ I
Sbjct: 304 RGDVLVFLSGEREIRTTAETLRKHHPPSTE--ILPLFARQGPQEQARIFQ--PHGTRRVI 359

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TN+AETS+T+ GI +VVD G  +   Y    K+  L    +S+ASA QRKGR GR   
Sbjct: 360 LATNVAETSLTVPGIHYVVDPGFARISRYSHRTKVQRLPVERVSQASANQRKGRCGRVAA 419

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           GVC RLYSE+ ++  A ++ PEI R ++ +++L +  +G G +  FPF++ P +  I   
Sbjct: 420 GVCIRLYSEDNFAARAAFTEPEIARANLAAVILQMKLLGFGAIEHFPFIDKPDSRLINDG 479

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            R+L + GA+D    +T+LGR L+ LPVD  +G+ML+       +  VL +AA LSVQ P
Sbjct: 480 YRTLEELGALDESGELTALGRQLARLPVDPRIGRMLLAAGEHQCLAEVLVIAAALSVQDP 539

Query: 665 FTNRAFRDPDCETARKELESNHGDP----LTVLNAYKEWLGVKKDRVRSKKW---CKRRG 717
                 R  D + A  E+ ++   P    +T LN +  +L  ++ ++   K+   C+R  
Sbjct: 540 RE----RPHDKQQAADEIHASFSHPESDFITFLNLW-HFLDTERHQLSRNKFVKLCQRHF 594

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q ++ + + G 
Sbjct: 595 LSWNRVQEWRDIHAQLREQMLEMGF 619



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 4/164 (2%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLYSE+ ++  A ++ PEI R ++ +++L +  +G G +  FPF++ P + 
Sbjct: 415 GRVAAGVCIRLYSEDNFAARAAFTEPEIARANLAAVILQMKLLGFGAIEHFPFIDKPDSR 474

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I    R+L + GA+D    +T LGR L+ LPVD  +G+ML+       +  +L++  AL
Sbjct: 475 LINDGYRTLEELGALDESGELTALGRQLARLPVDPRIGRMLLAAGEHQCLAEVLVIAAAL 534

Query: 928 NFGAIDSKERVTSLGRFLSDLPVDI--PLGKMLVFGSMFHQIDT 969
           +    D +ER     +   ++      P    + F +++H +DT
Sbjct: 535 SVQ--DPRERPHDKQQAADEIHASFSHPESDFITFLNLWHFLDT 576



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV++ + E+ + + + +V+++ G+TG GKSTQ+P+  +  G   F RI  TQPRRIA  
Sbjct: 85  LPVSERRDEVAELIERHQVIVLCGETGSGKSTQLPKLCLDLGRGRFGRIGHTQPRRIAAR 144

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           SL+ RVA E   +   LVGY++RF    R +T I  +T+G+LL
Sbjct: 145 SLASRVAQELGVENGGLVGYKVRFHDRVRPETAIKLMTDGMLL 187



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 188  AEIQQDRWLNEYDTLIIDEAHERGLNIDFLLGYLKGLLPRRPDLKLIVTSATIDPERFAR 247

Query: 1174 YF 1175
            +F
Sbjct: 248  HF 249



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 12/124 (9%)

Query: 906  KMLVFGSMFH-----QIDTMLLLD---LALNFGAIDSKERVTSLGRFLSDLPVDIPLGKM 957
            K+L FG++ H     + D+ L+ D        GA+D    +T+LGR L+ LPVD  +G+M
Sbjct: 455  KLLGFGAIEHFPFIDKPDSRLINDGYRTLEELGALDESGELTALGRQLARLPVDPRIGRM 514

Query: 958  LVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDI--PLGKMLVFGSMFH 1015
            L+       +  +L++  AL+    D +ER     +   ++      P    + F +++H
Sbjct: 515  LLAAGEHQCLAEVLVIAAALSVQ--DPRERPHDKQQAADEIHASFSHPESDFITFLNLWH 572

Query: 1016 QIDT 1019
             +DT
Sbjct: 573  FLDT 576



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 12/124 (9%)

Query: 956  KMLVFGSMFH-----QIDTMLLLD---LALNFGAIDSKERVTSLGRFLSDLPVDIPLGKM 1007
            K+L FG++ H     + D+ L+ D        GA+D    +T+LGR L+ LPVD  +G+M
Sbjct: 455  KLLGFGAIEHFPFIDKPDSRLINDGYRTLEELGALDESGELTALGRQLARLPVDPRIGRM 514

Query: 1008 LVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDI--PLGKMLVFGSMFH 1065
            L+       +  +L++  AL+    D +ER     +   ++      P    + F +++H
Sbjct: 515  LLAAGEHQCLAEVLVIAAALSVQ--DPRERPHDKQQAADEIHASFSHPESDFITFLNLWH 572

Query: 1066 QIDT 1069
             +DT
Sbjct: 573  FLDT 576


>gi|114320780|ref|YP_742463.1| ATP-dependent helicase HrpA [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227174|gb|ABI56973.1| ATP-dependent helicase HrpA [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1341

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 166/468 (35%), Positives = 267/468 (57%), Gaps = 20/468 (4%)

Query: 278 SYDVLVLDEIHER-HLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGD 336
            Y V   D++ ER HL     L     LL    E+  D  L +YD L++DE HER L+ D
Sbjct: 161 GYKVRFTDQVSERTHLK----LLTDGMLL---AEIQRDRHLDAYDTLIIDEAHERSLNID 213

Query: 337 FLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVEL 396
           F+LG +K LL    ++K+I+ SATI+ E F  +F+  A I++V GR YP+++ Y P+V+ 
Sbjct: 214 FILGYLKRLLPRRPDLKVIITSATIDPERFSKHFDE-APILEVSGRTYPVEVRYRPMVDD 272

Query: 397 DRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWI 456
           +  + E L PG  +  +  + ++     +GDVL+F+SG  EI     A ++ +       
Sbjct: 273 EDERDEDL-PGAVVEAVHELARE---PGQGDVLVFLSGEREIRECTEALRKKHPPHTE-- 326

Query: 457 VLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVT 516
           VLPL++ LS  EQ RVF+    G R+ +++TN+AETS+T+ GIR+VVDSG  +   Y   
Sbjct: 327 VLPLYARLSAAEQQRVFN-PKGGGRRVVLATNVAETSVTVPGIRYVVDSGYARINRYSYR 385

Query: 517 AKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLL 576
            K+S L    IS+ASA QR GR GR  PGV  RLYSEE ++  + ++ PEI+R ++ +++
Sbjct: 386 TKVSRLPIEPISQASANQRAGRCGREAPGVAIRLYSEEDFAGRSAFTDPEIQRTNLAAVI 445

Query: 577 LSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPL 636
           L +  +GLGD+++FPF+E P  + +    + L + GA+     +T+LGR L+ LP+D P+
Sbjct: 446 LQMKALGLGDIQRFPFVEPPEHKFVNDGFKLLHELGAVTEDRELTALGRQLARLPLDPPV 505

Query: 637 GKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           G+ML+       +D VL +AA LSVQ P           + A  +      D L+++  +
Sbjct: 506 GRMLLAAREQGVLDEVLVIAAALSVQDPRERPLDAQQAADQAHAQWRHGKSDFLSLVLLW 565

Query: 697 KEWLGVKK--DRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
           +++   K+     + ++WC+ R +   R  E   +  Q ++++  SGL
Sbjct: 566 QDYHRQKRRLSNRQLRQWCRERFLSPHRMREWLDIHRQIRELV--SGL 611



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 80/130 (61%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PGV  RLYSEE ++  + ++ PEI+R ++ +++L +  +GLGD+++FPF+E P  +
Sbjct: 409 GREAPGVAIRLYSEEDFAGRSAFTDPEIQRTNLAAVILQMKALGLGDIQRFPFVEPPEHK 468

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GA+     +T LGR L+ LP+D P+G+ML+       +D +L++  AL
Sbjct: 469 FVNDGFKLLHELGAVTEDRELTALGRQLARLPLDPPVGRMLLAAREQGVLDEVLVIAAAL 528

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 529 SVQ--DPRER 536



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
           SLPV Q   ++ + +   +VV+I G TG GKSTQIP+  +  G      I  TQPRR+A 
Sbjct: 82  SLPVNQRLDDLREAIRDHQVVVICGATGSGKSTQIPKICMALGRGVHGWIGHTQPRRLAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +L++R++ E  +     VGY++RF     E+T +  +T+G+LL
Sbjct: 142 RTLAQRISDELGTALGEAVGYKVRFTDQVSERTHLKLLTDGMLL 185



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L +YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQRDRHLDAYDTLIIDEAHERSLNIDFILGYLKRLLPRRPDLKVIITSATIDPERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 246  HFDEAPILEVSGRT 259


>gi|444351188|ref|YP_007387332.1| ATP-dependent helicase hrpA [Enterobacter aerogenes EA1509E]
 gi|443902018|emb|CCG29792.1| ATP-dependent helicase hrpA [Enterobacter aerogenes EA1509E]
          Length = 1313

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 193 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 252

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 253 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 305

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 306 ILIFMSGEREIRDTAEALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 361

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 362 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 421

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 422 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 481

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     LGR LS LPVD  L ++++       +   + + + LS+Q
Sbjct: 482 LEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARVVLEAQKHGCVREAMIITSALSIQ 541

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 542 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 600

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 601 YLRVREWQDIYTQLRQVVKELGL 623



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 414 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 473

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L ++++       +   ++
Sbjct: 474 NIQDGVRLLEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARVVLEAQKHGCVREAMI 533

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 534 ITSALSIQ--DPRER 546



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 89  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 148

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 149 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 192



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 193  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 252

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 253  HFNNAPIIEVSGRT 266


>gi|432453957|ref|ZP_19696186.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE193]
 gi|433033036|ref|ZP_20220791.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE112]
 gi|430972022|gb|ELC89021.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE193]
 gi|431556522|gb|ELI30299.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE112]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|419277659|ref|ZP_13819920.1| ATP-dependent helicase HrpA [Escherichia coli DEC10E]
 gi|419380451|ref|ZP_13921416.1| ATP-dependent helicase HrpA [Escherichia coli DEC14C]
 gi|419385838|ref|ZP_13926723.1| ATP-dependent helicase HrpA [Escherichia coli DEC14D]
 gi|378132828|gb|EHW94180.1| ATP-dependent helicase HrpA [Escherichia coli DEC10E]
 gi|378230570|gb|EHX90688.1| ATP-dependent helicase HrpA [Escherichia coli DEC14C]
 gi|378233515|gb|EHX93602.1| ATP-dependent helicase HrpA [Escherichia coli DEC14D]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|448083755|ref|XP_004195435.1| Piso0_004822 [Millerozyma farinosa CBS 7064]
 gi|359376857|emb|CCE85240.1| Piso0_004822 [Millerozyma farinosa CBS 7064]
          Length = 1106

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 153/433 (35%), Positives = 235/433 (54%), Gaps = 20/433 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  +S Y V++LDE HER +  D L  ++K    S  ++K+I+ SAT++ E F  +
Sbjct: 548 EALYDAIMSRYSVIMLDEAHERTIATDVLFALLKKAAKSNPDLKVIVTSATLDAEKFSNF 607

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           FN    I+KVPGR YP+++ Y    ELD   +           L  + + +    RGD+L
Sbjct: 608 FNNCP-ILKVPGRTYPVEILYSKKPELDYLAA----------ALDTVIQIHVSEPRGDIL 656

Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F++G  EI +    +    +   +     I+LP++S+L  E Q R+F   P   RK I 
Sbjct: 657 VFLTGQEEIDNSCEILAERVKHLGDTIDELIILPVYSSLPSEIQSRIFEPTPPNSRKVIF 716

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETSITIDGI +VVD G VK  +YD    M TL    IS++ A QR GRAGRTGPG
Sbjct: 717 ATNIAETSITIDGIYYVVDPGFVKINAYDSKLGMDTLIVSPISQSQANQRSGRAGRTGPG 776

Query: 546 VCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            CYRLY+E  ++  +   + PEI+R ++   +L L  MG+ D+  F F++ P  + +  +
Sbjct: 777 KCYRLYTESAFNNEMLPNTVPEIQRQNLSHTILMLKAMGINDLMGFDFMDPPSTDTMVKA 836

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           ++ L    A+D +  +T LG+ ++D P++  L K L+  S F   D +L++ A+LSVQ+ 
Sbjct: 837 LQDLYTLSALDDEGYLTDLGKKMADFPMEPALAKTLIMSSEFGCSDEILTIVAMLSVQTV 896

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F     +  + +  R     + GD LT+LN YK W         S KWCK   I ++   
Sbjct: 897 FYRPREKQKEADQKRSLFLHSQGDHLTLLNVYKSWAL----NGYSSKWCKENYIHDRSLK 952

Query: 725 EVTKLRSQFKQVL 737
              ++R Q   ++
Sbjct: 953 RALEVRKQLVTIM 965



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 76/120 (63%), Gaps = 7/120 (5%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---- 82
           T + I+E + SLPV   K +I++ V + + V+I G+TG GK+TQI QYL ++G+      
Sbjct: 429 TNLSIQEQRESLPVFDMKNDIVNAVNENQFVVIVGETGSGKTTQIVQYLSESGYNEIKNE 488

Query: 83  ---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
              I CTQPRR+A IS++ RV+ E  S+  + VGY +RF+      T I ++T+G+L ++
Sbjct: 489 HKIIGCTQPRRVAAISVASRVSEEVGSRVGDRVGYTVRFDDKTSPNTDIKYMTDGILEKE 548



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  ++  +   + PEI+R ++   +L L  MG+ D+  F F++ P  +
Sbjct: 772 RTGPGKCYRLYTESAFNNEMLPNTVPEIQRQNLSHTILMLKAMGINDLMGFDFMDPPSTD 831

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            +  +++ L    A+D +  +T LG+ ++D P++  L K L+  S F   D +L +
Sbjct: 832 TMVKALQDLYTLSALDDEGYLTDLGKKMADFPMEPALAKTLIMSSEFGCSDEILTI 887



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 11/99 (11%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPK-----------QVQVAADNFLSSYDVLVLDEIHERH 1137
            EE G R+       V F  K  P            + +   D  +S Y V++LDE HER 
Sbjct: 511  EEVGSRVGDRVGYTVRFDDKTSPNTDIKYMTDGILEKEALYDAIMSRYSVIMLDEAHERT 570

Query: 1138 LHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            +  D L  ++K    S  ++K+I+ SAT++ E F  +FN
Sbjct: 571  IATDVLFALLKKAAKSNPDLKVIVTSATLDAEKFSNFFN 609


>gi|300976331|ref|ZP_07173393.1| ATP-dependent helicase HrpA [Escherichia coli MS 45-1]
 gi|386629140|ref|YP_006148860.1| ATP-dependent RNA helicase HrpA [Escherichia coli str. 'clone D
           i2']
 gi|386634060|ref|YP_006153779.1| ATP-dependent RNA helicase HrpA [Escherichia coli str. 'clone D
           i14']
 gi|422369750|ref|ZP_16450147.1| ATP-dependent helicase HrpA [Escherichia coli MS 16-3]
 gi|432411619|ref|ZP_19654290.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE39]
 gi|432436378|ref|ZP_19678770.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE188]
 gi|432456393|ref|ZP_19698586.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE201]
 gi|432495368|ref|ZP_19737175.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE214]
 gi|432504137|ref|ZP_19745869.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE220]
 gi|432523557|ref|ZP_19760690.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE230]
 gi|432568402|ref|ZP_19804921.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE53]
 gi|432592584|ref|ZP_19828906.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE60]
 gi|432650844|ref|ZP_19886602.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE87]
 gi|432783342|ref|ZP_20017524.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE63]
 gi|432898259|ref|ZP_20109067.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE192]
 gi|432978065|ref|ZP_20166888.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE209]
 gi|432995123|ref|ZP_20183736.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE218]
 gi|432999646|ref|ZP_20188178.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE223]
 gi|433028338|ref|ZP_20216203.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE109]
 gi|433057754|ref|ZP_20244825.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE124]
 gi|433086968|ref|ZP_20273358.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE137]
 gi|433115314|ref|ZP_20301121.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE153]
 gi|433124903|ref|ZP_20310483.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE160]
 gi|433138963|ref|ZP_20324240.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE167]
 gi|433148904|ref|ZP_20333947.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE174]
 gi|433212265|ref|ZP_20395872.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE99]
 gi|442606587|ref|ZP_21021383.1| ATP-dependent helicase HrpA [Escherichia coli Nissle 1917]
 gi|300410117|gb|EFJ93655.1| ATP-dependent helicase HrpA [Escherichia coli MS 45-1]
 gi|315298518|gb|EFU57773.1| ATP-dependent helicase HrpA [Escherichia coli MS 16-3]
 gi|355420039|gb|AER84236.1| ATP-dependent RNA helicase HrpA [Escherichia coli str. 'clone D
           i2']
 gi|355424959|gb|AER89155.1| ATP-dependent RNA helicase HrpA [Escherichia coli str. 'clone D
           i14']
 gi|430935722|gb|ELC56021.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE39]
 gi|430963797|gb|ELC81378.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE188]
 gi|430983365|gb|ELD00028.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE201]
 gi|431025311|gb|ELD38421.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE214]
 gi|431040019|gb|ELD50824.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE220]
 gi|431053277|gb|ELD62905.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE230]
 gi|431101139|gb|ELE06062.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE53]
 gi|431129726|gb|ELE31836.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE60]
 gi|431191548|gb|ELE90923.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE87]
 gi|431330234|gb|ELG17515.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE63]
 gi|431427378|gb|ELH09418.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE192]
 gi|431481576|gb|ELH61290.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE209]
 gi|431508005|gb|ELH86281.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE218]
 gi|431510902|gb|ELH89035.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE223]
 gi|431544139|gb|ELI19093.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE109]
 gi|431572290|gb|ELI45132.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE124]
 gi|431607962|gb|ELI77316.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE137]
 gi|431635594|gb|ELJ03798.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE153]
 gi|431647965|gb|ELJ15368.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE160]
 gi|431662595|gb|ELJ29364.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE167]
 gi|431673412|gb|ELJ39637.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE174]
 gi|431735209|gb|ELJ98569.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE99]
 gi|441712266|emb|CCQ07360.1| ATP-dependent helicase HrpA [Escherichia coli Nissle 1917]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|194426019|ref|ZP_03058575.1| ATP-dependent helicase HrpA [Escherichia coli B171]
 gi|416297178|ref|ZP_11651605.1| ATP-dependent helicase hrpA [Shigella flexneri CDC 796-83]
 gi|417172407|ref|ZP_12002440.1| ATP-dependent helicase HrpA [Escherichia coli 3.2608]
 gi|417181359|ref|ZP_12008494.1| ATP-dependent helicase HrpA [Escherichia coli 93.0624]
 gi|418043624|ref|ZP_12681781.1| ATP-dependent helicase HrpA [Escherichia coli W26]
 gi|419299900|ref|ZP_13841906.1| ATP-dependent helicase HrpA [Escherichia coli DEC11C]
 gi|419306025|ref|ZP_13847933.1| ATP-dependent helicase HrpA [Escherichia coli DEC11D]
 gi|419311113|ref|ZP_13852983.1| ATP-dependent helicase HrpA [Escherichia coli DEC11E]
 gi|419316397|ref|ZP_13858216.1| ATP-dependent helicase HrpA [Escherichia coli DEC12A]
 gi|419322379|ref|ZP_13864102.1| ATP-dependent helicase HrpA [Escherichia coli DEC12B]
 gi|419328498|ref|ZP_13870123.1| ATP-dependent helicase HrpA [Escherichia coli DEC12C]
 gi|419334122|ref|ZP_13875666.1| ATP-dependent helicase HrpA [Escherichia coli DEC12D]
 gi|419339338|ref|ZP_13880819.1| ATP-dependent helicase HrpA [Escherichia coli DEC12E]
 gi|419928160|ref|ZP_14445877.1| ATP-dependent RNA helicase HrpA [Escherichia coli 541-1]
 gi|420391091|ref|ZP_14890351.1| ATP-dependent helicase HrpA [Escherichia coli EPEC C342-62]
 gi|421682169|ref|ZP_16121984.1| ATP-dependent helicase HrpA [Shigella flexneri 1485-80]
 gi|422762517|ref|ZP_16816273.1| ATP-dependent helicase HrpA [Escherichia coli E1167]
 gi|194416074|gb|EDX32340.1| ATP-dependent helicase HrpA [Escherichia coli B171]
 gi|320185742|gb|EFW60497.1| ATP-dependent helicase hrpA [Shigella flexneri CDC 796-83]
 gi|324117608|gb|EGC11513.1| ATP-dependent helicase HrpA [Escherichia coli E1167]
 gi|378151270|gb|EHX12383.1| ATP-dependent helicase HrpA [Escherichia coli DEC11D]
 gi|378153354|gb|EHX14439.1| ATP-dependent helicase HrpA [Escherichia coli DEC11C]
 gi|378159711|gb|EHX20715.1| ATP-dependent helicase HrpA [Escherichia coli DEC11E]
 gi|378171302|gb|EHX32174.1| ATP-dependent helicase HrpA [Escherichia coli DEC12B]
 gi|378172409|gb|EHX33261.1| ATP-dependent helicase HrpA [Escherichia coli DEC12A]
 gi|378174020|gb|EHX34849.1| ATP-dependent helicase HrpA [Escherichia coli DEC12C]
 gi|378186335|gb|EHX46958.1| ATP-dependent helicase HrpA [Escherichia coli DEC12D]
 gi|378192368|gb|EHX52929.1| ATP-dependent helicase HrpA [Escherichia coli DEC12E]
 gi|383473481|gb|EID65503.1| ATP-dependent helicase HrpA [Escherichia coli W26]
 gi|386180105|gb|EIH57579.1| ATP-dependent helicase HrpA [Escherichia coli 3.2608]
 gi|386185181|gb|EIH67914.1| ATP-dependent helicase HrpA [Escherichia coli 93.0624]
 gi|388405931|gb|EIL66343.1| ATP-dependent RNA helicase HrpA [Escherichia coli 541-1]
 gi|391313567|gb|EIQ71150.1| ATP-dependent helicase HrpA [Escherichia coli EPEC C342-62]
 gi|404340852|gb|EJZ67269.1| ATP-dependent helicase HrpA [Shigella flexneri 1485-80]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432679945|ref|ZP_19915330.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE143]
 gi|431222368|gb|ELF19650.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE143]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432440886|ref|ZP_19683228.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE189]
 gi|432445987|ref|ZP_19688288.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE191]
 gi|432465449|ref|ZP_19707541.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE205]
 gi|432583551|ref|ZP_19819953.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE57]
 gi|433013600|ref|ZP_20201966.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE104]
 gi|433023237|ref|ZP_20211242.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE106]
 gi|433072498|ref|ZP_20259177.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE129]
 gi|433119958|ref|ZP_20305649.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE157]
 gi|433182926|ref|ZP_20367207.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE85]
 gi|430967383|gb|ELC84737.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE189]
 gi|430973861|gb|ELC90805.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE191]
 gi|430994432|gb|ELD10760.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE205]
 gi|431117095|gb|ELE20363.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE57]
 gi|431532554|gb|ELI09108.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE104]
 gi|431537932|gb|ELI14038.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE106]
 gi|431590426|gb|ELI61458.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE129]
 gi|431645515|gb|ELJ13064.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE157]
 gi|431709584|gb|ELJ74039.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE85]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|74312238|ref|YP_310657.1| ATP-dependent RNA helicase HrpA [Shigella sonnei Ss046]
 gi|383178564|ref|YP_005456569.1| ATP-dependent RNA helicase HrpA [Shigella sonnei 53G]
 gi|415843403|ref|ZP_11523378.1| ATP-dependent helicase HrpA [Shigella sonnei 53G]
 gi|73855715|gb|AAZ88422.1| helicase, ATP-dependent [Shigella sonnei Ss046]
 gi|323169684|gb|EFZ55351.1| ATP-dependent helicase HrpA [Shigella sonnei 53G]
          Length = 1281

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|420303741|ref|ZP_14805753.1| ATP-dependent helicase HrpA [Escherichia coli TW10119]
 gi|428965141|ref|ZP_19036081.1| ATP-dependent helicase HrpA [Escherichia coli 90.0091]
 gi|444974457|ref|ZP_21291662.1| ATP-dependent helicase HrpA [Escherichia coli 99.1805]
 gi|390817342|gb|EIO83778.1| ATP-dependent helicase HrpA [Escherichia coli TW10119]
 gi|427229243|gb|EKV97585.1| ATP-dependent helicase HrpA [Escherichia coli 90.0091]
 gi|444600591|gb|ELV75424.1| ATP-dependent helicase HrpA [Escherichia coli 99.1805]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|331662886|ref|ZP_08363796.1| ATP-dependent helicase HrpA [Escherichia coli TA143]
 gi|331058685|gb|EGI30662.1| ATP-dependent helicase HrpA [Escherichia coli TA143]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|425300158|ref|ZP_18690130.1| ATP-dependent helicase HrpA [Escherichia coli 07798]
 gi|408217862|gb|EKI42097.1| ATP-dependent helicase HrpA [Escherichia coli 07798]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|416336007|ref|ZP_11672655.1| ATP-dependent helicase hrpA [Escherichia coli WV_060327]
 gi|320195625|gb|EFW70250.1| ATP-dependent helicase hrpA [Escherichia coli WV_060327]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|387606998|ref|YP_006095854.1| ATP-dependent helicase HrpA [Escherichia coli 042]
 gi|284921298|emb|CBG34365.1| ATP-dependent helicase HrpA [Escherichia coli 042]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|387829394|ref|YP_003349331.1| ATP-dependent helicase [Escherichia coli SE15]
 gi|281178551|dbj|BAI54881.1| ATP-dependent helicase [Escherichia coli SE15]
          Length = 1281

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQQSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQAADEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQQSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|110641598|ref|YP_669328.1| ATP-dependent RNA helicase HrpA [Escherichia coli 536]
 gi|191171037|ref|ZP_03032588.1| ATP-dependent helicase HrpA [Escherichia coli F11]
 gi|300972513|ref|ZP_07171990.1| ATP-dependent helicase HrpA [Escherichia coli MS 200-1]
 gi|422373439|ref|ZP_16453749.1| ATP-dependent helicase HrpA [Escherichia coli MS 60-1]
 gi|432470753|ref|ZP_19712802.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE206]
 gi|432713183|ref|ZP_19948225.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE8]
 gi|433077547|ref|ZP_20264102.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE131]
 gi|110343190|gb|ABG69427.1| ATP-dependent helicase HrpA [Escherichia coli 536]
 gi|190908769|gb|EDV68357.1| ATP-dependent helicase HrpA [Escherichia coli F11]
 gi|300309138|gb|EFJ63658.1| ATP-dependent helicase HrpA [Escherichia coli MS 200-1]
 gi|324015190|gb|EGB84409.1| ATP-dependent helicase HrpA [Escherichia coli MS 60-1]
 gi|430998786|gb|ELD14988.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE206]
 gi|431257807|gb|ELF50601.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE8]
 gi|431598560|gb|ELI68350.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE131]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPIDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|300901824|ref|ZP_07119859.1| ATP-dependent helicase HrpA [Escherichia coli MS 84-1]
 gi|301304934|ref|ZP_07211037.1| ATP-dependent helicase HrpA [Escherichia coli MS 124-1]
 gi|415866116|ref|ZP_11538786.1| ATP-dependent helicase HrpA [Escherichia coli MS 85-1]
 gi|417154854|ref|ZP_11992983.1| ATP-dependent helicase HrpA [Escherichia coli 96.0497]
 gi|417240204|ref|ZP_12036640.1| ATP-dependent helicase HrpA [Escherichia coli 9.0111]
 gi|417832637|ref|ZP_12479103.1| ATP-dependent RNA helicase HrpA [Escherichia coli O104:H4 str.
           01-09591]
 gi|417867179|ref|ZP_12512217.1| hypothetical protein C22711_4107 [Escherichia coli O104:H4 str.
           C227-11]
 gi|419804577|ref|ZP_14329732.1| ATP-dependent helicase HrpA [Escherichia coli AI27]
 gi|422987368|ref|ZP_16978144.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           C227-11]
 gi|422994249|ref|ZP_16985013.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           C236-11]
 gi|422999440|ref|ZP_16990196.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           09-7901]
 gi|423003041|ref|ZP_16993787.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           04-8351]
 gi|423009561|ref|ZP_17000299.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-3677]
 gi|423023755|ref|ZP_17014458.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4404]
 gi|423028904|ref|ZP_17019597.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4522]
 gi|423029771|ref|ZP_17020459.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4623]
 gi|423037610|ref|ZP_17028284.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4632 C1]
 gi|423042724|ref|ZP_17033391.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4632 C2]
 gi|423049415|ref|ZP_17040072.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4632 C3]
 gi|423052996|ref|ZP_17041804.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4632 C4]
 gi|423059963|ref|ZP_17048759.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4632 C5]
 gi|429718820|ref|ZP_19253764.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-9450]
 gi|429724158|ref|ZP_19259029.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-9990]
 gi|429775778|ref|ZP_19307769.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-02030]
 gi|429777866|ref|ZP_19309835.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-02033-1]
 gi|429782110|ref|ZP_19314037.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-02092]
 gi|429788613|ref|ZP_19320493.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-02093]
 gi|429794043|ref|ZP_19325884.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-02281]
 gi|429797696|ref|ZP_19329500.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-02318]
 gi|429806116|ref|ZP_19337855.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-02913]
 gi|429810561|ref|ZP_19342262.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-03439]
 gi|429814666|ref|ZP_19346335.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-04080]
 gi|429820029|ref|ZP_19351654.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-03943]
 gi|429912361|ref|ZP_19378317.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-9941]
 gi|429913245|ref|ZP_19379195.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-4984]
 gi|429918289|ref|ZP_19384224.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-5604]
 gi|429924083|ref|ZP_19389999.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-4986]
 gi|429932977|ref|ZP_19398871.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-4987]
 gi|429934581|ref|ZP_19400471.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-4988]
 gi|429940243|ref|ZP_19406117.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-5603]
 gi|429947878|ref|ZP_19413733.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-6006]
 gi|429950517|ref|ZP_19416365.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec12-0465]
 gi|429953816|ref|ZP_19419652.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec12-0466]
 gi|432764784|ref|ZP_19999226.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE48]
 gi|300406036|gb|EFJ89574.1| ATP-dependent helicase HrpA [Escherichia coli MS 84-1]
 gi|300839764|gb|EFK67524.1| ATP-dependent helicase HrpA [Escherichia coli MS 124-1]
 gi|315253564|gb|EFU33532.1| ATP-dependent helicase HrpA [Escherichia coli MS 85-1]
 gi|340734753|gb|EGR63865.1| ATP-dependent RNA helicase HrpA [Escherichia coli O104:H4 str.
           01-09591]
 gi|341920468|gb|EGT70075.1| hypothetical protein C22711_4107 [Escherichia coli O104:H4 str.
           C227-11]
 gi|354865324|gb|EHF25753.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           C236-11]
 gi|354870326|gb|EHF30731.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           C227-11]
 gi|354872117|gb|EHF32514.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           04-8351]
 gi|354875617|gb|EHF35983.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           09-7901]
 gi|354876164|gb|EHF36526.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4404]
 gi|354881640|gb|EHF41969.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4522]
 gi|354882093|gb|EHF42420.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-3677]
 gi|354898052|gb|EHF58208.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4632 C1]
 gi|354900147|gb|EHF60283.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4623]
 gi|354902742|gb|EHF62859.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4632 C2]
 gi|354904224|gb|EHF64318.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4632 C3]
 gi|354914981|gb|EHF74962.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4632 C5]
 gi|354920539|gb|EHF80473.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-4632 C4]
 gi|384472405|gb|EIE56461.1| ATP-dependent helicase HrpA [Escherichia coli AI27]
 gi|386167943|gb|EIH34459.1| ATP-dependent helicase HrpA [Escherichia coli 96.0497]
 gi|386212905|gb|EII23345.1| ATP-dependent helicase HrpA [Escherichia coli 9.0111]
 gi|429349129|gb|EKY85884.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-02030]
 gi|429358201|gb|EKY94871.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-02033-1]
 gi|429359605|gb|EKY96270.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-02092]
 gi|429369349|gb|EKZ05930.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-02093]
 gi|429372059|gb|EKZ08609.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-02281]
 gi|429374009|gb|EKZ10549.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-02318]
 gi|429379734|gb|EKZ16233.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-02913]
 gi|429384114|gb|EKZ20571.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-03439]
 gi|429389403|gb|EKZ25824.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-03943]
 gi|429395390|gb|EKZ31757.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-9990]
 gi|429400635|gb|EKZ36950.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           11-04080]
 gi|429405727|gb|EKZ41992.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-9450]
 gi|429416250|gb|EKZ52407.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-4987]
 gi|429416798|gb|EKZ52950.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-4984]
 gi|429417422|gb|EKZ53572.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-4986]
 gi|429422176|gb|EKZ58297.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-4988]
 gi|429425988|gb|EKZ62077.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-5603]
 gi|429439004|gb|EKZ74996.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-5604]
 gi|429441821|gb|EKZ77789.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-6006]
 gi|429448797|gb|EKZ84706.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec12-0466]
 gi|429450685|gb|EKZ86579.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec12-0465]
 gi|429453388|gb|EKZ89256.1| ATP-dependent RNA helicase hrpA [Escherichia coli O104:H4 str.
           Ec11-9941]
 gi|431311485|gb|ELF99644.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE48]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|301017768|ref|ZP_07182418.1| ATP-dependent helicase HrpA [Escherichia coli MS 69-1]
 gi|419916651|ref|ZP_14434948.1| ATP-dependent RNA helicase HrpA [Escherichia coli KD2]
 gi|300399979|gb|EFJ83517.1| ATP-dependent helicase HrpA [Escherichia coli MS 69-1]
 gi|388395538|gb|EIL56716.1| ATP-dependent RNA helicase HrpA [Escherichia coli KD2]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q K++I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKKDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|215486651|ref|YP_002329082.1| ATP-dependent RNA helicase HrpA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312969283|ref|ZP_07783487.1| ATP-dependent helicase HrpA [Escherichia coli 2362-75]
 gi|215264723|emb|CAS09099.1| ATP-dependent helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|312286067|gb|EFR13983.1| ATP-dependent helicase HrpA [Escherichia coli 2362-75]
          Length = 1281

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|397165610|ref|ZP_10489059.1| ATP-dependent helicase HrpA [Enterobacter radicincitans DSM 16656]
 gi|396092892|gb|EJI90453.1| ATP-dependent helicase HrpA [Enterobacter radicincitans DSM 16656]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESAGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     +LPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALSKRDLRHTE--ILPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPLDKKQASDEKHQRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQVILEAVRDNQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++     GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCSGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|419957150|ref|ZP_14473216.1| ATP-dependent RNA helicase HrpA [Enterobacter cloacae subsp.
           cloacae GS1]
 gi|388607308|gb|EIM36512.1| ATP-dependent RNA helicase HrpA [Enterobacter cloacae subsp.
           cloacae GS1]
          Length = 985

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 174 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 233

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+       GD
Sbjct: 234 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGNESSGD 286

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     +LPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 287 ILIFMSGEREIRDTADALSKRDLRHTE--ILPLYARLSNSEQNRVFQ--PHSGRRIVLAT 342

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 343 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 402

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 403 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 462

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 463 LEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 522

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 523 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKTLSSNQFRRQCRVDFLN 581

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 582 YLRVREWQDIYTQLRQVVKELGI 604



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 395 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 454

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 455 NIQDGVRLLEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 514

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 515 ITSALSIQ--DPRER 527



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 70  NLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 129

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 130 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 173



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 174  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 233

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 234  HFNNAPIIEVSGRT 247


>gi|419202835|ref|ZP_13746041.1| ATP-dependent helicase HrpA [Escherichia coli DEC8B]
 gi|378052931|gb|EHW15232.1| ATP-dependent helicase HrpA [Escherichia coli DEC8B]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   ++VI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQMVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|422335897|ref|ZP_16416870.1| ATP-dependent RNA helicase hrpA [Aggregatibacter aphrophilus F0387]
 gi|353346859|gb|EHB91143.1| ATP-dependent RNA helicase hrpA [Aggregatibacter aphrophilus F0387]
          Length = 1333

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 172/523 (32%), Positives = 266/523 (50%), Gaps = 61/523 (11%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+ G +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQTDRFLNQYSCLIIDEAHERSLNNDFIFGYLKQLLPRRPDLKVIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNH-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQHLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEEDFNNRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLL 472

Query: 609 TQHGAIDSKE-------------------------------------RVTSLGRFLSDLP 631
            + GAI  K+                                      +T +GR L+ LP
Sbjct: 473 EELGAIQPKKYKSRDGARLPTRAPNLTDESTRQETRASESTEKKQGWELTPIGRQLAQLP 532

Query: 632 VDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLT 691
           VD  L KML+    F  +  V+ + + LS+Q P      +    +   +       D L 
Sbjct: 533 VDPRLAKMLLSAVDFGSVYEVMIIVSALSIQDPRERPTDKQQASDEKHRRFADKKSDFLA 592

Query: 692 VLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGP 749
            LN +      +K+  ++  ++ C++  +   R  E   +  Q +  + + GL   I   
Sbjct: 593 FLNLWNYVQAQQKELTKNQFRRQCQKDFLNYLRIREWQDIYQQIRLTVREMGL--PINSE 650

Query: 750 DASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAY 792
            A       AL  G   LL  I  K+AE    +++ L A NA+
Sbjct: 651 KAEYQQIHTALLSG---LLSHIGLKEAE----KQQYLGARNAH 686



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ G      I  TQPRRIA 
Sbjct: 82  SLPVSQRKAEIEKLLSEHQVIVVAGETGSGKTTQLPKMCLELGLGNLGIIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  +LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELQTELGDLVGYKVRFNDQISDNTQIKLMTDGILL 185



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 25/186 (13%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNNRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           I+  V+ L + GAI  K+  +  G   + LP   P    L   S   +            
Sbjct: 465 IQDGVKLLEELGAIQPKKYKSRDG---ARLPTRAP---NLTDESTRQETR---------- 508

Query: 929 FGAIDSKER-----VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAID 983
             A +S E+     +T +GR L+ LPVD  L KML+    F  +  ++++  AL+    D
Sbjct: 509 --ASESTEKKQGWELTPIGRQLAQLPVDPRLAKMLLSAVDFGSVYEVMIIVSALSIQ--D 564

Query: 984 SKERVT 989
            +ER T
Sbjct: 565 PRERPT 570



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+ G +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQTDRFLNQYSCLIIDEAHERSLNNDFIFGYLKQLLPRRPDLKVIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNHAPIIEVSGRT 259



 Score = 41.2 bits (95), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++ TD FL+ Y  LI+DE HER L  DF+ G +
Sbjct: 186 AEIQTDRFLNQYSCLIIDEAHERSLNNDFIFGYL 219


>gi|432489039|ref|ZP_19730921.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE213]
 gi|432839055|ref|ZP_20072543.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE140]
 gi|433202931|ref|ZP_20386717.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE95]
 gi|431022147|gb|ELD35417.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE213]
 gi|431390474|gb|ELG74177.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE140]
 gi|431723472|gb|ELJ87418.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE95]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432391707|ref|ZP_19634554.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE21]
 gi|430920618|gb|ELC41505.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE21]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|417199312|ref|ZP_12016764.1| ATP-dependent helicase HrpA [Escherichia coli 4.0522]
 gi|417204693|ref|ZP_12018875.1| ATP-dependent helicase HrpA [Escherichia coli JB1-95]
 gi|419196707|ref|ZP_13740104.1| ATP-dependent helicase HrpA [Escherichia coli DEC8A]
 gi|419220986|ref|ZP_13763927.1| ATP-dependent helicase HrpA [Escherichia coli DEC8E]
 gi|378049543|gb|EHW11883.1| ATP-dependent helicase HrpA [Escherichia coli DEC8A]
 gi|378068802|gb|EHW30898.1| ATP-dependent helicase HrpA [Escherichia coli DEC8E]
 gi|386188293|gb|EIH77099.1| ATP-dependent helicase HrpA [Escherichia coli 4.0522]
 gi|386198183|gb|EIH92368.1| ATP-dependent helicase HrpA [Escherichia coli JB1-95]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|331652672|ref|ZP_08353683.1| ATP-dependent helicase HrpA [Escherichia coli M718]
 gi|331049778|gb|EGI21844.1| ATP-dependent helicase HrpA [Escherichia coli M718]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|251792338|ref|YP_003007063.1| ATP-dependent RNA helicase HrpA [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533730|gb|ACS96976.1| ATP-dependent helicase HrpA [Aggregatibacter aphrophilus NJ8700]
          Length = 1333

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 172/523 (32%), Positives = 266/523 (50%), Gaps = 61/523 (11%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+ G +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQTDRFLNQYSCLIIDEAHERSLNNDFIFGYLKQLLPRRPDLKVIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNH-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQHLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEEDFNNRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLL 472

Query: 609 TQHGAIDSKE-------------------------------------RVTSLGRFLSDLP 631
            + GAI  K+                                      +T +GR L+ LP
Sbjct: 473 EELGAIQPKKYKSRDGARLPTRAPNLTDESTRQETRASESTEKKQGWELTPIGRQLAQLP 532

Query: 632 VDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLT 691
           VD  L KML+    F  +  V+ + + LS+Q P      +    +   +       D L 
Sbjct: 533 VDPRLAKMLLSAVDFGSVYEVMIIVSALSIQDPRERPTDKQQASDEKHRRFADKKSDFLA 592

Query: 692 VLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGP 749
            LN +      +K+  ++  ++ C++  +   R  E   +  Q +  + + GL   I   
Sbjct: 593 FLNLWNYVQAQQKELTKNQFRRQCQKDFLNYLRIREWQDIYQQIRLTVREMGL--PINSE 650

Query: 750 DASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAY 792
            A       AL  G   LL  I  K+AE    +++ L A NA+
Sbjct: 651 KAEYQQIHTALLSG---LLSHIGLKEAE----KQQYLGARNAH 686



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ G      I  TQPRRIA 
Sbjct: 82  SLPVSQRKAEIEKLLSEHQVIVVAGETGSGKTTQLPKMCLELGLGNLGIIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  +LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELQTELGDLVGYKVRFNDQISDNTQIKLMTDGILL 185



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 25/186 (13%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNNRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           I+  V+ L + GAI  K+  +  G   + LP   P    L   S   +            
Sbjct: 465 IQDGVKLLEELGAIQPKKYKSRDG---ARLPTRAP---NLTDESTRQETR---------- 508

Query: 929 FGAIDSKER-----VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAID 983
             A +S E+     +T +GR L+ LPVD  L KML+    F  +  ++++  AL+    D
Sbjct: 509 --ASESTEKKQGWELTPIGRQLAQLPVDPRLAKMLLSAVDFGSVYEVMIIVSALSIQ--D 564

Query: 984 SKERVT 989
            +ER T
Sbjct: 565 PRERPT 570



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+ G +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQTDRFLNQYSCLIIDEAHERSLNNDFIFGYLKQLLPRRPDLKVIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNHAPIIEVSGRT 259



 Score = 41.6 bits (96), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++ TD FL+ Y  LI+DE HER L  DF+ G +
Sbjct: 186 AEIQTDRFLNQYSCLIIDEAHERSLNNDFIFGYL 219


>gi|417137663|ref|ZP_11981453.1| ATP-dependent helicase HrpA [Escherichia coli 97.0259]
 gi|417307877|ref|ZP_12094737.1| ATP-dependent RNA helicase hrpA [Escherichia coli PCN033]
 gi|338770656|gb|EGP25416.1| ATP-dependent RNA helicase hrpA [Escherichia coli PCN033]
 gi|386159227|gb|EIH15560.1| ATP-dependent helicase HrpA [Escherichia coli 97.0259]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|309797127|ref|ZP_07691525.1| ATP-dependent helicase HrpA [Escherichia coli MS 145-7]
 gi|404374806|ref|ZP_10980005.1| ATP-dependent RNA helicase hrpA [Escherichia sp. 1_1_43]
 gi|417159323|ref|ZP_11996473.1| ATP-dependent helicase HrpA [Escherichia coli 99.0741]
 gi|419951566|ref|ZP_14467755.1| ATP-dependent RNA helicase HrpA [Escherichia coli CUMT8]
 gi|422765990|ref|ZP_16819717.1| ATP-dependent helicase HrpA [Escherichia coli E1520]
 gi|422774737|ref|ZP_16828393.1| ATP-dependent helicase HrpA [Escherichia coli H120]
 gi|432967527|ref|ZP_20156443.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE203]
 gi|433091836|ref|ZP_20278118.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE138]
 gi|308119297|gb|EFO56559.1| ATP-dependent helicase HrpA [Escherichia coli MS 145-7]
 gi|323937564|gb|EGB33833.1| ATP-dependent helicase HrpA [Escherichia coli E1520]
 gi|323947651|gb|EGB43654.1| ATP-dependent helicase HrpA [Escherichia coli H120]
 gi|386175338|gb|EIH47329.1| ATP-dependent helicase HrpA [Escherichia coli 99.0741]
 gi|388414325|gb|EIL74288.1| ATP-dependent RNA helicase HrpA [Escherichia coli CUMT8]
 gi|404291664|gb|EJZ48530.1| ATP-dependent RNA helicase hrpA [Escherichia sp. 1_1_43]
 gi|431473499|gb|ELH53333.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE203]
 gi|431611916|gb|ELI81177.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE138]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|301046778|ref|ZP_07193899.1| ATP-dependent helicase HrpA [Escherichia coli MS 185-1]
 gi|300301287|gb|EFJ57672.1| ATP-dependent helicase HrpA [Escherichia coli MS 185-1]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|253773612|ref|YP_003036443.1| ATP-dependent RNA helicase HrpA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253324656|gb|ACT29258.1| ATP-dependent helicase HrpA [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSNHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|163800761|ref|ZP_02194661.1| ATP-dependent helicase HrpA [Vibrio sp. AND4]
 gi|159175110|gb|EDP59907.1| ATP-dependent helicase HrpA [Vibrio sp. AND4]
          Length = 1283

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 151/398 (37%), Positives = 231/398 (58%), Gaps = 21/398 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+   Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 221 HFNN-APIIEVSGRTYPVDTRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 273

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F  A  G R+ +++TN
Sbjct: 274 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ-AHTG-RRIVLATN 329

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 330 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 389

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 390 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 449

Query: 609 TQHGAI----------DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
            + GAI          DSK+R+TS+GR L+ LP+D  L +M++       +  V+ +AA 
Sbjct: 450 EELGAINAETKGSASQDSKKRLTSVGRQLARLPIDPRLARMVLEAPKQGALKEVMVIAAA 509

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           LS+Q P    + +    +   K       D LT +N +
Sbjct: 510 LSIQDPRERPSDKQQSSDDKHKRFFHEESDFLTFVNLW 547



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 12/140 (8%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 381 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 440

Query: 868 NIESSVRSLTQHGAI----------DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQI 917
           NI+  VR L + GAI          DSK+R+T++GR L+ LP+D  L +M++       +
Sbjct: 441 NIQDGVRLLEELGAINAETKGSASQDSKKRLTSVGRQLARLPIDPRLARMVLEAPKQGAL 500

Query: 918 DTMLLLDLALNFGAIDSKER 937
             ++++  AL+    D +ER
Sbjct: 501 KEVMVIAAALSIQ--DPRER 518



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 58  LPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 160



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234



 Score = 40.0 bits (92), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 194


>gi|193066906|ref|ZP_03047875.1| ATP-dependent helicase HrpA [Escherichia coli E110019]
 gi|192959496|gb|EDV89930.1| ATP-dependent helicase HrpA [Escherichia coli E110019]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
              ++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARMVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|420379574|ref|ZP_14879053.1| ATP-dependent helicase HrpA [Shigella dysenteriae 225-75]
 gi|391304267|gb|EIQ62084.1| ATP-dependent helicase HrpA [Shigella dysenteriae 225-75]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|417232573|ref|ZP_12033779.1| ATP-dependent helicase HrpA [Escherichia coli 5.0959]
 gi|386203944|gb|EII08457.1| ATP-dependent helicase HrpA [Escherichia coli 5.0959]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|293404892|ref|ZP_06648884.1| ATP-dependent RNA helicase HrpA [Escherichia coli FVEC1412]
 gi|298380535|ref|ZP_06990134.1| ATP-dependent RNA helicase HrpA [Escherichia coli FVEC1302]
 gi|300900091|ref|ZP_07118285.1| ATP-dependent helicase HrpA [Escherichia coli MS 198-1]
 gi|432401638|ref|ZP_19644391.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE26]
 gi|432425805|ref|ZP_19668313.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE181]
 gi|432460481|ref|ZP_19702633.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE204]
 gi|432475499|ref|ZP_19717504.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE208]
 gi|432517440|ref|ZP_19754634.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE228]
 gi|432631111|ref|ZP_19867041.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE80]
 gi|432640756|ref|ZP_19876593.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE83]
 gi|432774516|ref|ZP_20008799.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE54]
 gi|432886267|ref|ZP_20100406.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE158]
 gi|432912360|ref|ZP_20118225.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE190]
 gi|433018336|ref|ZP_20206587.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE105]
 gi|433067709|ref|ZP_20254514.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE128]
 gi|433158407|ref|ZP_20343260.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE177]
 gi|433177925|ref|ZP_20362356.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE82]
 gi|291427100|gb|EFF00127.1| ATP-dependent RNA helicase HrpA [Escherichia coli FVEC1412]
 gi|298277977|gb|EFI19491.1| ATP-dependent RNA helicase HrpA [Escherichia coli FVEC1302]
 gi|300356370|gb|EFJ72240.1| ATP-dependent helicase HrpA [Escherichia coli MS 198-1]
 gi|430926468|gb|ELC47055.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE26]
 gi|430957336|gb|ELC75990.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE181]
 gi|430990023|gb|ELD06469.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE204]
 gi|431007499|gb|ELD22311.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE208]
 gi|431052244|gb|ELD61896.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE228]
 gi|431171490|gb|ELE71665.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE80]
 gi|431183021|gb|ELE82837.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE83]
 gi|431318983|gb|ELG06668.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE54]
 gi|431417501|gb|ELG99935.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE158]
 gi|431441307|gb|ELH22416.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE190]
 gi|431534204|gb|ELI10689.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE105]
 gi|431587194|gb|ELI58574.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE128]
 gi|431680061|gb|ELJ45935.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE177]
 gi|431707120|gb|ELJ71676.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE82]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|193062567|ref|ZP_03043661.1| ATP-dependent helicase HrpA [Escherichia coli E22]
 gi|192931689|gb|EDV84289.1| ATP-dependent helicase HrpA [Escherichia coli E22]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+ G GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGEMGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432353290|ref|ZP_19596565.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE2]
 gi|432537539|ref|ZP_19774444.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE235]
 gi|432665743|ref|ZP_19901326.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE116]
 gi|433052778|ref|ZP_20239985.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE122]
 gi|430876488|gb|ELC00002.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE2]
 gi|431070590|gb|ELD78891.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE235]
 gi|431202559|gb|ELF01245.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE116]
 gi|431572612|gb|ELI45440.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE122]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|429032197|ref|ZP_19097860.1| ATP-dependent helicase HrpA [Escherichia coli 96.0939]
 gi|427286935|gb|EKW50758.1| ATP-dependent helicase HrpA [Escherichia coli 96.0939]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|419375245|ref|ZP_13916280.1| ATP-dependent helicase HrpA [Escherichia coli DEC14B]
 gi|378222375|gb|EHX82613.1| ATP-dependent helicase HrpA [Escherichia coli DEC14B]
          Length = 1206

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 86  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 145

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 146 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 198

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 199 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 254

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 255 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 314

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 315 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 374

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 375 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 434

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 435 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 493

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 494 YLRVREWQDIYTQLRQVVKELGI 516



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 307 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 366

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 367 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 426

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 427 ITSALSIQ--DPRER 439



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 56  VVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLV 112
           +VI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A  +++ R+A E  ++    +
Sbjct: 1   MVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCI 60

Query: 113 GYQIRFEKHRREKTKIVFITEGLLL 137
           GY++RF  H  + T +  +T+G+LL
Sbjct: 61  GYKVRFSDHVSDNTMVKLMTDGILL 85



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 86   AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 145

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 146  HFNNAPIIEVSGRT 159


>gi|168748990|ref|ZP_02774012.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4113]
 gi|168756053|ref|ZP_02781060.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4401]
 gi|168763098|ref|ZP_02788105.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4501]
 gi|168769454|ref|ZP_02794461.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4486]
 gi|168777194|ref|ZP_02802201.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4196]
 gi|168782902|ref|ZP_02807909.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4076]
 gi|168788304|ref|ZP_02813311.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC869]
 gi|168799682|ref|ZP_02824689.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC508]
 gi|195938030|ref|ZP_03083412.1| ATP-dependent RNA helicase HrpA [Escherichia coli O157:H7 str.
           EC4024]
 gi|208811135|ref|ZP_03252968.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4206]
 gi|208816120|ref|ZP_03257299.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4045]
 gi|208819095|ref|ZP_03259415.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4042]
 gi|209400718|ref|YP_002270422.1| ATP-dependent RNA helicase HrpA [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329249|ref|ZP_03445329.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. TW14588]
 gi|254792957|ref|YP_003077794.1| ATP-dependent RNA helicase HrpA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224356|ref|ZP_05938637.1| ATP-dependent helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257390|ref|ZP_05949923.1| ATP-dependent helicase [Escherichia coli O157:H7 str. FRIK966]
 gi|416313529|ref|ZP_11658300.1| ATP-dependent helicase hrpA [Escherichia coli O157:H7 str. 1044]
 gi|416320553|ref|ZP_11663017.1| ATP-dependent helicase hrpA [Escherichia coli O157:H7 str. EC1212]
 gi|416329062|ref|ZP_11668565.1| ATP-dependent helicase hrpA [Escherichia coli O157:H7 str. 1125]
 gi|416783391|ref|ZP_11878102.1| ATP-dependent RNA helicase HrpA [Escherichia coli O157:H7 str.
           G5101]
 gi|419044705|ref|ZP_13591667.1| ATP-dependent helicase HrpA [Escherichia coli DEC3A]
 gi|419050826|ref|ZP_13597713.1| ATP-dependent helicase HrpA [Escherichia coli DEC3B]
 gi|419056840|ref|ZP_13603667.1| ATP-dependent helicase HrpA [Escherichia coli DEC3C]
 gi|419062205|ref|ZP_13608957.1| ATP-dependent helicase HrpA [Escherichia coli DEC3D]
 gi|419069176|ref|ZP_13614859.1| ATP-dependent helicase HrpA [Escherichia coli DEC3E]
 gi|419080239|ref|ZP_13625705.1| ATP-dependent helicase HrpA [Escherichia coli DEC4A]
 gi|419086029|ref|ZP_13631406.1| ATP-dependent helicase HrpA [Escherichia coli DEC4B]
 gi|419092246|ref|ZP_13637543.1| ATP-dependent helicase HrpA [Escherichia coli DEC4C]
 gi|419098008|ref|ZP_13643225.1| ATP-dependent helicase HrpA [Escherichia coli DEC4D]
 gi|419103686|ref|ZP_13648833.1| ATP-dependent helicase HrpA [Escherichia coli DEC4E]
 gi|419109155|ref|ZP_13654233.1| ATP-dependent helicase HrpA [Escherichia coli DEC4F]
 gi|420269159|ref|ZP_14771541.1| ATP-dependent helicase HrpA [Escherichia coli PA22]
 gi|420275058|ref|ZP_14777367.1| ATP-dependent helicase HrpA [Escherichia coli PA40]
 gi|420286164|ref|ZP_14788367.1| ATP-dependent helicase HrpA [Escherichia coli TW10246]
 gi|420292113|ref|ZP_14794251.1| ATP-dependent helicase HrpA [Escherichia coli TW11039]
 gi|420309435|ref|ZP_14811385.1| ATP-dependent helicase HrpA [Escherichia coli EC1738]
 gi|420314713|ref|ZP_14816602.1| ATP-dependent helicase HrpA [Escherichia coli EC1734]
 gi|421811988|ref|ZP_16247748.1| ATP-dependent helicase HrpA [Escherichia coli 8.0416]
 gi|421818072|ref|ZP_16253599.1| ATP-dependent helicase HrpA [Escherichia coli 10.0821]
 gi|421823700|ref|ZP_16259105.1| ATP-dependent helicase HrpA [Escherichia coli FRIK920]
 gi|421830522|ref|ZP_16265828.1| ATP-dependent helicase HrpA [Escherichia coli PA7]
 gi|423700382|ref|ZP_17674866.1| ATP-dependent helicase HrpA [Escherichia coli PA31]
 gi|424077081|ref|ZP_17814216.1| ATP-dependent helicase HrpA [Escherichia coli FDA505]
 gi|424083425|ref|ZP_17820067.1| ATP-dependent helicase HrpA [Escherichia coli FDA517]
 gi|424089919|ref|ZP_17825999.1| ATP-dependent helicase HrpA [Escherichia coli FRIK1996]
 gi|424102726|ref|ZP_17837657.1| ATP-dependent helicase HrpA [Escherichia coli FRIK1990]
 gi|424109502|ref|ZP_17843878.1| ATP-dependent helicase HrpA [Escherichia coli 93-001]
 gi|424115193|ref|ZP_17849175.1| ATP-dependent helicase HrpA [Escherichia coli PA3]
 gi|424121515|ref|ZP_17855008.1| ATP-dependent helicase HrpA [Escherichia coli PA5]
 gi|424127674|ref|ZP_17860702.1| ATP-dependent helicase HrpA [Escherichia coli PA9]
 gi|424140463|ref|ZP_17872520.1| ATP-dependent helicase HrpA [Escherichia coli PA14]
 gi|424146914|ref|ZP_17878445.1| ATP-dependent helicase HrpA [Escherichia coli PA15]
 gi|424152886|ref|ZP_17883947.1| ATP-dependent helicase HrpA [Escherichia coli PA24]
 gi|424226698|ref|ZP_17889441.1| ATP-dependent helicase HrpA [Escherichia coli PA25]
 gi|424302938|ref|ZP_17895297.1| ATP-dependent helicase HrpA [Escherichia coli PA28]
 gi|424443077|ref|ZP_17901091.1| ATP-dependent helicase HrpA [Escherichia coli PA32]
 gi|424455412|ref|ZP_17906725.1| ATP-dependent helicase HrpA [Escherichia coli PA33]
 gi|424461725|ref|ZP_17912388.1| ATP-dependent helicase HrpA [Escherichia coli PA39]
 gi|424468162|ref|ZP_17918139.1| ATP-dependent helicase HrpA [Escherichia coli PA41]
 gi|424474744|ref|ZP_17924214.1| ATP-dependent helicase HrpA [Escherichia coli PA42]
 gi|424480549|ref|ZP_17929631.1| ATP-dependent helicase HrpA [Escherichia coli TW07945]
 gi|424486680|ref|ZP_17935360.1| ATP-dependent helicase HrpA [Escherichia coli TW09098]
 gi|424492997|ref|ZP_17941023.1| ATP-dependent helicase HrpA [Escherichia coli TW09195]
 gi|424499934|ref|ZP_17946996.1| ATP-dependent helicase HrpA [Escherichia coli EC4203]
 gi|424506111|ref|ZP_17952671.1| ATP-dependent helicase HrpA [Escherichia coli EC4196]
 gi|424512442|ref|ZP_17958429.1| ATP-dependent helicase HrpA [Escherichia coli TW14313]
 gi|424519874|ref|ZP_17964128.1| ATP-dependent helicase HrpA [Escherichia coli TW14301]
 gi|424525796|ref|ZP_17969631.1| ATP-dependent helicase HrpA [Escherichia coli EC4421]
 gi|424531971|ref|ZP_17975423.1| ATP-dependent helicase HrpA [Escherichia coli EC4422]
 gi|424537967|ref|ZP_17981033.1| ATP-dependent helicase HrpA [Escherichia coli EC4013]
 gi|424543896|ref|ZP_17986487.1| ATP-dependent helicase HrpA [Escherichia coli EC4402]
 gi|424550184|ref|ZP_17992185.1| ATP-dependent helicase HrpA [Escherichia coli EC4439]
 gi|424556423|ref|ZP_17997952.1| ATP-dependent helicase HrpA [Escherichia coli EC4436]
 gi|424562772|ref|ZP_18003880.1| ATP-dependent helicase HrpA [Escherichia coli EC4437]
 gi|424568838|ref|ZP_18009551.1| ATP-dependent helicase HrpA [Escherichia coli EC4448]
 gi|424574975|ref|ZP_18015205.1| ATP-dependent helicase HrpA [Escherichia coli EC1845]
 gi|424580882|ref|ZP_18020649.1| ATP-dependent helicase HrpA [Escherichia coli EC1863]
 gi|425097638|ref|ZP_18500495.1| ATP-dependent helicase HrpA [Escherichia coli 3.4870]
 gi|425103858|ref|ZP_18506280.1| ATP-dependent helicase HrpA [Escherichia coli 5.2239]
 gi|425109679|ref|ZP_18511731.1| ATP-dependent helicase HrpA [Escherichia coli 6.0172]
 gi|425125461|ref|ZP_18526798.1| ATP-dependent helicase HrpA [Escherichia coli 8.0586]
 gi|425131386|ref|ZP_18532325.1| ATP-dependent helicase HrpA [Escherichia coli 8.2524]
 gi|425137744|ref|ZP_18538270.1| ATP-dependent helicase HrpA [Escherichia coli 10.0833]
 gi|425143657|ref|ZP_18543780.1| ATP-dependent helicase HrpA [Escherichia coli 10.0869]
 gi|425149757|ref|ZP_18549481.1| ATP-dependent helicase HrpA [Escherichia coli 88.0221]
 gi|425155574|ref|ZP_18554952.1| ATP-dependent helicase HrpA [Escherichia coli PA34]
 gi|425162060|ref|ZP_18561068.1| ATP-dependent helicase HrpA [Escherichia coli FDA506]
 gi|425167706|ref|ZP_18566326.1| ATP-dependent helicase HrpA [Escherichia coli FDA507]
 gi|425173836|ref|ZP_18572074.1| ATP-dependent helicase HrpA [Escherichia coli FDA504]
 gi|425179755|ref|ZP_18577612.1| ATP-dependent helicase HrpA [Escherichia coli FRIK1999]
 gi|425186040|ref|ZP_18583454.1| ATP-dependent helicase HrpA [Escherichia coli FRIK1997]
 gi|425192844|ref|ZP_18589760.1| ATP-dependent helicase HrpA [Escherichia coli NE1487]
 gi|425199224|ref|ZP_18595617.1| ATP-dependent helicase HrpA [Escherichia coli NE037]
 gi|425205725|ref|ZP_18601667.1| ATP-dependent helicase HrpA [Escherichia coli FRIK2001]
 gi|425211444|ref|ZP_18606993.1| ATP-dependent helicase HrpA [Escherichia coli PA4]
 gi|425217537|ref|ZP_18612661.1| ATP-dependent helicase HrpA [Escherichia coli PA23]
 gi|425224096|ref|ZP_18618739.1| ATP-dependent helicase HrpA [Escherichia coli PA49]
 gi|425230307|ref|ZP_18624511.1| ATP-dependent helicase HrpA [Escherichia coli PA45]
 gi|425236472|ref|ZP_18630294.1| ATP-dependent helicase HrpA [Escherichia coli TT12B]
 gi|425242558|ref|ZP_18635996.1| ATP-dependent helicase HrpA [Escherichia coli MA6]
 gi|425254508|ref|ZP_18647157.1| ATP-dependent helicase HrpA [Escherichia coli CB7326]
 gi|425260722|ref|ZP_18652891.1| ATP-dependent helicase HrpA [Escherichia coli EC96038]
 gi|425294311|ref|ZP_18684660.1| ATP-dependent helicase HrpA [Escherichia coli PA38]
 gi|425310976|ref|ZP_18700265.1| ATP-dependent helicase HrpA [Escherichia coli EC1735]
 gi|425316897|ref|ZP_18705795.1| ATP-dependent helicase HrpA [Escherichia coli EC1736]
 gi|425323007|ref|ZP_18711484.1| ATP-dependent helicase HrpA [Escherichia coli EC1737]
 gi|425329176|ref|ZP_18717198.1| ATP-dependent helicase HrpA [Escherichia coli EC1846]
 gi|425335349|ref|ZP_18722884.1| ATP-dependent helicase HrpA [Escherichia coli EC1847]
 gi|425341756|ref|ZP_18728792.1| ATP-dependent helicase HrpA [Escherichia coli EC1848]
 gi|425347599|ref|ZP_18734221.1| ATP-dependent helicase HrpA [Escherichia coli EC1849]
 gi|425353855|ref|ZP_18740055.1| ATP-dependent helicase HrpA [Escherichia coli EC1850]
 gi|425359830|ref|ZP_18745619.1| ATP-dependent helicase HrpA [Escherichia coli EC1856]
 gi|425365963|ref|ZP_18751309.1| ATP-dependent helicase HrpA [Escherichia coli EC1862]
 gi|425372384|ref|ZP_18757166.1| ATP-dependent helicase HrpA [Escherichia coli EC1864]
 gi|425385219|ref|ZP_18768913.1| ATP-dependent helicase HrpA [Escherichia coli EC1866]
 gi|425391918|ref|ZP_18775179.1| ATP-dependent helicase HrpA [Escherichia coli EC1868]
 gi|425398035|ref|ZP_18780882.1| ATP-dependent helicase HrpA [Escherichia coli EC1869]
 gi|425404043|ref|ZP_18786447.1| ATP-dependent helicase HrpA [Escherichia coli EC1870]
 gi|425410623|ref|ZP_18792545.1| ATP-dependent helicase HrpA [Escherichia coli NE098]
 gi|425416910|ref|ZP_18798331.1| ATP-dependent helicase HrpA [Escherichia coli FRIK523]
 gi|425428149|ref|ZP_18808939.1| ATP-dependent helicase HrpA [Escherichia coli 0.1304]
 gi|428946565|ref|ZP_19019012.1| ATP-dependent helicase HrpA [Escherichia coli 88.1467]
 gi|428952802|ref|ZP_19024728.1| ATP-dependent helicase HrpA [Escherichia coli 88.1042]
 gi|428958639|ref|ZP_19030114.1| ATP-dependent helicase HrpA [Escherichia coli 89.0511]
 gi|428970957|ref|ZP_19041429.1| ATP-dependent helicase HrpA [Escherichia coli 90.0039]
 gi|428977507|ref|ZP_19047470.1| ATP-dependent helicase HrpA [Escherichia coli 90.2281]
 gi|428983307|ref|ZP_19052839.1| ATP-dependent helicase HrpA [Escherichia coli 93.0055]
 gi|428989618|ref|ZP_19058703.1| ATP-dependent helicase HrpA [Escherichia coli 93.0056]
 gi|428995331|ref|ZP_19064068.1| ATP-dependent helicase HrpA [Escherichia coli 94.0618]
 gi|429001516|ref|ZP_19069822.1| ATP-dependent helicase HrpA [Escherichia coli 95.0183]
 gi|429007706|ref|ZP_19075386.1| ATP-dependent helicase HrpA [Escherichia coli 95.1288]
 gi|429014176|ref|ZP_19081214.1| ATP-dependent helicase HrpA [Escherichia coli 95.0943]
 gi|429020176|ref|ZP_19086796.1| ATP-dependent helicase HrpA [Escherichia coli 96.0428]
 gi|429026058|ref|ZP_19092235.1| ATP-dependent helicase HrpA [Escherichia coli 96.0427]
 gi|429038322|ref|ZP_19103576.1| ATP-dependent helicase HrpA [Escherichia coli 96.0932]
 gi|429044343|ref|ZP_19109164.1| ATP-dependent helicase HrpA [Escherichia coli 96.0107]
 gi|429049885|ref|ZP_19114503.1| ATP-dependent helicase HrpA [Escherichia coli 97.0003]
 gi|429055161|ref|ZP_19119581.1| ATP-dependent helicase HrpA [Escherichia coli 97.1742]
 gi|429060855|ref|ZP_19124932.1| ATP-dependent helicase HrpA [Escherichia coli 97.0007]
 gi|429066800|ref|ZP_19130409.1| ATP-dependent helicase HrpA [Escherichia coli 99.0672]
 gi|429072908|ref|ZP_19136213.1| ATP-dependent helicase HrpA [Escherichia coli 99.0678]
 gi|429078270|ref|ZP_19141443.1| ATP-dependent helicase HrpA [Escherichia coli 99.0713]
 gi|429825966|ref|ZP_19357192.1| ATP-dependent helicase HrpA [Escherichia coli 96.0109]
 gi|429832261|ref|ZP_19362828.1| ATP-dependent helicase HrpA [Escherichia coli 97.0010]
 gi|444924467|ref|ZP_21243942.1| ATP-dependent helicase HrpA [Escherichia coli 09BKT078844]
 gi|444930440|ref|ZP_21249540.1| ATP-dependent helicase HrpA [Escherichia coli 99.0814]
 gi|444935707|ref|ZP_21254571.1| ATP-dependent helicase HrpA [Escherichia coli 99.0815]
 gi|444941357|ref|ZP_21259944.1| ATP-dependent helicase HrpA [Escherichia coli 99.0816]
 gi|444946938|ref|ZP_21265306.1| ATP-dependent helicase HrpA [Escherichia coli 99.0839]
 gi|444952534|ref|ZP_21270691.1| ATP-dependent helicase HrpA [Escherichia coli 99.0848]
 gi|444958026|ref|ZP_21275948.1| ATP-dependent helicase HrpA [Escherichia coli 99.1753]
 gi|444963296|ref|ZP_21280975.1| ATP-dependent helicase HrpA [Escherichia coli 99.1775]
 gi|444969068|ref|ZP_21286489.1| ATP-dependent helicase HrpA [Escherichia coli 99.1793]
 gi|444979956|ref|ZP_21296911.1| ATP-dependent helicase HrpA [Escherichia coli ATCC 700728]
 gi|444985291|ref|ZP_21302114.1| ATP-dependent helicase HrpA [Escherichia coli PA11]
 gi|444990553|ref|ZP_21307247.1| ATP-dependent helicase HrpA [Escherichia coli PA19]
 gi|444995794|ref|ZP_21312344.1| ATP-dependent helicase HrpA [Escherichia coli PA13]
 gi|445001421|ref|ZP_21317847.1| ATP-dependent helicase HrpA [Escherichia coli PA2]
 gi|445006847|ref|ZP_21323142.1| ATP-dependent helicase HrpA [Escherichia coli PA47]
 gi|445011982|ref|ZP_21328133.1| ATP-dependent helicase HrpA [Escherichia coli PA48]
 gi|445017739|ref|ZP_21333744.1| ATP-dependent helicase HrpA [Escherichia coli PA8]
 gi|445023330|ref|ZP_21339204.1| ATP-dependent helicase HrpA [Escherichia coli 7.1982]
 gi|445028588|ref|ZP_21344316.1| ATP-dependent helicase HrpA [Escherichia coli 99.1781]
 gi|445034042|ref|ZP_21349616.1| ATP-dependent helicase HrpA [Escherichia coli 99.1762]
 gi|445039710|ref|ZP_21355132.1| ATP-dependent helicase HrpA [Escherichia coli PA35]
 gi|445044926|ref|ZP_21360225.1| ATP-dependent helicase HrpA [Escherichia coli 3.4880]
 gi|445050521|ref|ZP_21365630.1| ATP-dependent helicase HrpA [Escherichia coli 95.0083]
 gi|445056266|ref|ZP_21371168.1| ATP-dependent helicase HrpA [Escherichia coli 99.0670]
 gi|452967880|ref|ZP_21966107.1| ATP-dependent RNA helicase HrpA [Escherichia coli O157:H7 str.
           EC4009]
 gi|187767519|gb|EDU31363.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4196]
 gi|188016557|gb|EDU54679.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4113]
 gi|188999683|gb|EDU68669.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4076]
 gi|189356806|gb|EDU75225.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4401]
 gi|189361560|gb|EDU79979.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4486]
 gi|189366652|gb|EDU85068.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4501]
 gi|189371874|gb|EDU90290.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC869]
 gi|189377901|gb|EDU96317.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC508]
 gi|208724641|gb|EDZ74349.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4206]
 gi|208732768|gb|EDZ81456.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4045]
 gi|208739218|gb|EDZ86900.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4042]
 gi|209162118|gb|ACI39551.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. EC4115]
 gi|217317688|gb|EEC26116.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. TW14588]
 gi|254592357|gb|ACT71718.1| ATP-dependent helicase [Escherichia coli O157:H7 str. TW14359]
 gi|320190133|gb|EFW64784.1| ATP-dependent helicase hrpA [Escherichia coli O157:H7 str. EC1212]
 gi|320637009|gb|EFX06870.1| ATP-dependent RNA helicase HrpA [Escherichia coli O157:H7 str.
           G5101]
 gi|326340717|gb|EGD64514.1| ATP-dependent helicase hrpA [Escherichia coli O157:H7 str. 1044]
 gi|326340968|gb|EGD64761.1| ATP-dependent helicase hrpA [Escherichia coli O157:H7 str. 1125]
 gi|377896907|gb|EHU61297.1| ATP-dependent helicase HrpA [Escherichia coli DEC3B]
 gi|377897785|gb|EHU62157.1| ATP-dependent helicase HrpA [Escherichia coli DEC3A]
 gi|377908563|gb|EHU72777.1| ATP-dependent helicase HrpA [Escherichia coli DEC3C]
 gi|377913637|gb|EHU77770.1| ATP-dependent helicase HrpA [Escherichia coli DEC3D]
 gi|377915628|gb|EHU79736.1| ATP-dependent helicase HrpA [Escherichia coli DEC3E]
 gi|377930057|gb|EHU93944.1| ATP-dependent helicase HrpA [Escherichia coli DEC4A]
 gi|377934808|gb|EHU98634.1| ATP-dependent helicase HrpA [Escherichia coli DEC4B]
 gi|377945329|gb|EHV09026.1| ATP-dependent helicase HrpA [Escherichia coli DEC4C]
 gi|377945632|gb|EHV09323.1| ATP-dependent helicase HrpA [Escherichia coli DEC4D]
 gi|377950932|gb|EHV14552.1| ATP-dependent helicase HrpA [Escherichia coli DEC4E]
 gi|377960448|gb|EHV23930.1| ATP-dependent helicase HrpA [Escherichia coli DEC4F]
 gi|390646707|gb|EIN25716.1| ATP-dependent helicase HrpA [Escherichia coli FRIK1996]
 gi|390647153|gb|EIN26075.1| ATP-dependent helicase HrpA [Escherichia coli FDA517]
 gi|390647574|gb|EIN26430.1| ATP-dependent helicase HrpA [Escherichia coli FDA505]
 gi|390665178|gb|EIN42491.1| ATP-dependent helicase HrpA [Escherichia coli 93-001]
 gi|390667261|gb|EIN44283.1| ATP-dependent helicase HrpA [Escherichia coli FRIK1990]
 gi|390684036|gb|EIN59667.1| ATP-dependent helicase HrpA [Escherichia coli PA3]
 gi|390686285|gb|EIN61644.1| ATP-dependent helicase HrpA [Escherichia coli PA5]
 gi|390687049|gb|EIN62343.1| ATP-dependent helicase HrpA [Escherichia coli PA9]
 gi|390704688|gb|EIN78522.1| ATP-dependent helicase HrpA [Escherichia coli PA15]
 gi|390705386|gb|EIN79117.1| ATP-dependent helicase HrpA [Escherichia coli PA14]
 gi|390716527|gb|EIN89324.1| ATP-dependent helicase HrpA [Escherichia coli PA22]
 gi|390728508|gb|EIO00803.1| ATP-dependent helicase HrpA [Escherichia coli PA25]
 gi|390728884|gb|EIO01137.1| ATP-dependent helicase HrpA [Escherichia coli PA24]
 gi|390730793|gb|EIO02743.1| ATP-dependent helicase HrpA [Escherichia coli PA28]
 gi|390746977|gb|EIO17572.1| ATP-dependent helicase HrpA [Escherichia coli PA31]
 gi|390747642|gb|EIO18192.1| ATP-dependent helicase HrpA [Escherichia coli PA32]
 gi|390749263|gb|EIO19542.1| ATP-dependent helicase HrpA [Escherichia coli PA33]
 gi|390759769|gb|EIO29132.1| ATP-dependent helicase HrpA [Escherichia coli PA40]
 gi|390771087|gb|EIO39796.1| ATP-dependent helicase HrpA [Escherichia coli PA41]
 gi|390772832|gb|EIO41326.1| ATP-dependent helicase HrpA [Escherichia coli PA42]
 gi|390773493|gb|EIO41866.1| ATP-dependent helicase HrpA [Escherichia coli PA39]
 gi|390791810|gb|EIO59173.1| ATP-dependent helicase HrpA [Escherichia coli TW10246]
 gi|390798700|gb|EIO65888.1| ATP-dependent helicase HrpA [Escherichia coli TW07945]
 gi|390799186|gb|EIO66363.1| ATP-dependent helicase HrpA [Escherichia coli TW11039]
 gi|390813029|gb|EIO79678.1| ATP-dependent helicase HrpA [Escherichia coli TW09098]
 gi|390831902|gb|EIO97238.1| ATP-dependent helicase HrpA [Escherichia coli EC4203]
 gi|390834098|gb|EIO99066.1| ATP-dependent helicase HrpA [Escherichia coli TW09195]
 gi|390835308|gb|EIP00075.1| ATP-dependent helicase HrpA [Escherichia coli EC4196]
 gi|390851540|gb|EIP14808.1| ATP-dependent helicase HrpA [Escherichia coli TW14301]
 gi|390852716|gb|EIP15857.1| ATP-dependent helicase HrpA [Escherichia coli TW14313]
 gi|390853584|gb|EIP16576.1| ATP-dependent helicase HrpA [Escherichia coli EC4421]
 gi|390865951|gb|EIP27939.1| ATP-dependent helicase HrpA [Escherichia coli EC4422]
 gi|390869678|gb|EIP31308.1| ATP-dependent helicase HrpA [Escherichia coli EC4013]
 gi|390876959|gb|EIP37917.1| ATP-dependent helicase HrpA [Escherichia coli EC4402]
 gi|390882039|gb|EIP42588.1| ATP-dependent helicase HrpA [Escherichia coli EC4439]
 gi|390886634|gb|EIP46722.1| ATP-dependent helicase HrpA [Escherichia coli EC4436]
 gi|390899473|gb|EIP58714.1| ATP-dependent helicase HrpA [Escherichia coli EC4437]
 gi|390901750|gb|EIP60907.1| ATP-dependent helicase HrpA [Escherichia coli EC1738]
 gi|390903090|gb|EIP62151.1| ATP-dependent helicase HrpA [Escherichia coli EC4448]
 gi|390909996|gb|EIP68760.1| ATP-dependent helicase HrpA [Escherichia coli EC1734]
 gi|390921931|gb|EIP80050.1| ATP-dependent helicase HrpA [Escherichia coli EC1863]
 gi|390923019|gb|EIP80994.1| ATP-dependent helicase HrpA [Escherichia coli EC1845]
 gi|408068412|gb|EKH02835.1| ATP-dependent helicase HrpA [Escherichia coli PA7]
 gi|408072283|gb|EKH06605.1| ATP-dependent helicase HrpA [Escherichia coli FRIK920]
 gi|408079918|gb|EKH14020.1| ATP-dependent helicase HrpA [Escherichia coli PA34]
 gi|408083907|gb|EKH17704.1| ATP-dependent helicase HrpA [Escherichia coli FDA506]
 gi|408086451|gb|EKH19980.1| ATP-dependent helicase HrpA [Escherichia coli FDA507]
 gi|408096730|gb|EKH29660.1| ATP-dependent helicase HrpA [Escherichia coli FDA504]
 gi|408102106|gb|EKH34523.1| ATP-dependent helicase HrpA [Escherichia coli FRIK1999]
 gi|408109206|gb|EKH41135.1| ATP-dependent helicase HrpA [Escherichia coli FRIK1997]
 gi|408113584|gb|EKH45170.1| ATP-dependent helicase HrpA [Escherichia coli NE1487]
 gi|408120994|gb|EKH51959.1| ATP-dependent helicase HrpA [Escherichia coli NE037]
 gi|408126652|gb|EKH57211.1| ATP-dependent helicase HrpA [Escherichia coli FRIK2001]
 gi|408131766|gb|EKH61786.1| ATP-dependent helicase HrpA [Escherichia coli PA4]
 gi|408144194|gb|EKH73439.1| ATP-dependent helicase HrpA [Escherichia coli PA23]
 gi|408145954|gb|EKH75098.1| ATP-dependent helicase HrpA [Escherichia coli PA49]
 gi|408149668|gb|EKH78339.1| ATP-dependent helicase HrpA [Escherichia coli PA45]
 gi|408160421|gb|EKH88440.1| ATP-dependent helicase HrpA [Escherichia coli TT12B]
 gi|408165353|gb|EKH93047.1| ATP-dependent helicase HrpA [Escherichia coli MA6]
 gi|408178775|gb|EKI05471.1| ATP-dependent helicase HrpA [Escherichia coli CB7326]
 gi|408185373|gb|EKI11556.1| ATP-dependent helicase HrpA [Escherichia coli EC96038]
 gi|408222478|gb|EKI46344.1| ATP-dependent helicase HrpA [Escherichia coli PA38]
 gi|408231730|gb|EKI54993.1| ATP-dependent helicase HrpA [Escherichia coli EC1735]
 gi|408243482|gb|EKI65997.1| ATP-dependent helicase HrpA [Escherichia coli EC1736]
 gi|408246836|gb|EKI69073.1| ATP-dependent helicase HrpA [Escherichia coli EC1737]
 gi|408251379|gb|EKI73112.1| ATP-dependent helicase HrpA [Escherichia coli EC1846]
 gi|408261316|gb|EKI82309.1| ATP-dependent helicase HrpA [Escherichia coli EC1847]
 gi|408264571|gb|EKI85369.1| ATP-dependent helicase HrpA [Escherichia coli EC1848]
 gi|408269617|gb|EKI89859.1| ATP-dependent helicase HrpA [Escherichia coli EC1849]
 gi|408279519|gb|EKI99124.1| ATP-dependent helicase HrpA [Escherichia coli EC1850]
 gi|408281361|gb|EKJ00779.1| ATP-dependent helicase HrpA [Escherichia coli EC1856]
 gi|408294408|gb|EKJ12804.1| ATP-dependent helicase HrpA [Escherichia coli EC1862]
 gi|408296113|gb|EKJ14389.1| ATP-dependent helicase HrpA [Escherichia coli EC1864]
 gi|408312289|gb|EKJ29134.1| ATP-dependent helicase HrpA [Escherichia coli EC1868]
 gi|408312598|gb|EKJ29428.1| ATP-dependent helicase HrpA [Escherichia coli EC1866]
 gi|408326535|gb|EKJ42343.1| ATP-dependent helicase HrpA [Escherichia coli EC1869]
 gi|408329841|gb|EKJ45233.1| ATP-dependent helicase HrpA [Escherichia coli NE098]
 gi|408330775|gb|EKJ46037.1| ATP-dependent helicase HrpA [Escherichia coli EC1870]
 gi|408342831|gb|EKJ57246.1| ATP-dependent helicase HrpA [Escherichia coli FRIK523]
 gi|408349987|gb|EKJ63894.1| ATP-dependent helicase HrpA [Escherichia coli 0.1304]
 gi|408553662|gb|EKK30745.1| ATP-dependent helicase HrpA [Escherichia coli 5.2239]
 gi|408554421|gb|EKK31358.1| ATP-dependent helicase HrpA [Escherichia coli 6.0172]
 gi|408554538|gb|EKK31469.1| ATP-dependent helicase HrpA [Escherichia coli 3.4870]
 gi|408576628|gb|EKK52219.1| ATP-dependent helicase HrpA [Escherichia coli 8.0586]
 gi|408584063|gb|EKK59102.1| ATP-dependent helicase HrpA [Escherichia coli 8.2524]
 gi|408584315|gb|EKK59350.1| ATP-dependent helicase HrpA [Escherichia coli 10.0833]
 gi|408596780|gb|EKK70886.1| ATP-dependent helicase HrpA [Escherichia coli 10.0869]
 gi|408600956|gb|EKK74778.1| ATP-dependent helicase HrpA [Escherichia coli 88.0221]
 gi|408602976|gb|EKK76645.1| ATP-dependent helicase HrpA [Escherichia coli 8.0416]
 gi|408614918|gb|EKK88162.1| ATP-dependent helicase HrpA [Escherichia coli 10.0821]
 gi|427210030|gb|EKV79979.1| ATP-dependent helicase HrpA [Escherichia coli 88.1042]
 gi|427211434|gb|EKV81187.1| ATP-dependent helicase HrpA [Escherichia coli 89.0511]
 gi|427212091|gb|EKV81748.1| ATP-dependent helicase HrpA [Escherichia coli 88.1467]
 gi|427228758|gb|EKV97141.1| ATP-dependent helicase HrpA [Escherichia coli 90.2281]
 gi|427230530|gb|EKV98695.1| ATP-dependent helicase HrpA [Escherichia coli 90.0039]
 gi|427246554|gb|EKW13761.1| ATP-dependent helicase HrpA [Escherichia coli 93.0056]
 gi|427247506|gb|EKW14560.1| ATP-dependent helicase HrpA [Escherichia coli 93.0055]
 gi|427248991|gb|EKW15876.1| ATP-dependent helicase HrpA [Escherichia coli 94.0618]
 gi|427265523|gb|EKW31074.1| ATP-dependent helicase HrpA [Escherichia coli 95.0943]
 gi|427265999|gb|EKW31503.1| ATP-dependent helicase HrpA [Escherichia coli 95.0183]
 gi|427267807|gb|EKW33019.1| ATP-dependent helicase HrpA [Escherichia coli 95.1288]
 gi|427280895|gb|EKW45236.1| ATP-dependent helicase HrpA [Escherichia coli 96.0428]
 gi|427284748|gb|EKW48764.1| ATP-dependent helicase HrpA [Escherichia coli 96.0427]
 gi|427297283|gb|EKW60321.1| ATP-dependent helicase HrpA [Escherichia coli 96.0932]
 gi|427302495|gb|EKW65283.1| ATP-dependent helicase HrpA [Escherichia coli 97.0003]
 gi|427303621|gb|EKW66331.1| ATP-dependent helicase HrpA [Escherichia coli 96.0107]
 gi|427317115|gb|EKW79026.1| ATP-dependent helicase HrpA [Escherichia coli 97.1742]
 gi|427318684|gb|EKW80544.1| ATP-dependent helicase HrpA [Escherichia coli 97.0007]
 gi|427324373|gb|EKW85849.1| ATP-dependent helicase HrpA [Escherichia coli 99.0672]
 gi|427331187|gb|EKW92421.1| ATP-dependent helicase HrpA [Escherichia coli 99.0713]
 gi|427331362|gb|EKW92595.1| ATP-dependent helicase HrpA [Escherichia coli 99.0678]
 gi|429256443|gb|EKY40617.1| ATP-dependent helicase HrpA [Escherichia coli 96.0109]
 gi|429258051|gb|EKY41971.1| ATP-dependent helicase HrpA [Escherichia coli 97.0010]
 gi|444540571|gb|ELV20211.1| ATP-dependent helicase HrpA [Escherichia coli 99.0814]
 gi|444544530|gb|ELV23585.1| ATP-dependent helicase HrpA [Escherichia coli 09BKT078844]
 gi|444549627|gb|ELV27861.1| ATP-dependent helicase HrpA [Escherichia coli 99.0815]
 gi|444561026|gb|ELV38159.1| ATP-dependent helicase HrpA [Escherichia coli 99.0839]
 gi|444562676|gb|ELV39720.1| ATP-dependent helicase HrpA [Escherichia coli 99.0816]
 gi|444567090|gb|ELV43862.1| ATP-dependent helicase HrpA [Escherichia coli 99.0848]
 gi|444576828|gb|ELV52975.1| ATP-dependent helicase HrpA [Escherichia coli 99.1753]
 gi|444580736|gb|ELV56632.1| ATP-dependent helicase HrpA [Escherichia coli 99.1775]
 gi|444582745|gb|ELV58520.1| ATP-dependent helicase HrpA [Escherichia coli 99.1793]
 gi|444596537|gb|ELV71594.1| ATP-dependent helicase HrpA [Escherichia coli PA11]
 gi|444596925|gb|ELV71971.1| ATP-dependent helicase HrpA [Escherichia coli ATCC 700728]
 gi|444610505|gb|ELV84914.1| ATP-dependent helicase HrpA [Escherichia coli PA13]
 gi|444610691|gb|ELV85098.1| ATP-dependent helicase HrpA [Escherichia coli PA19]
 gi|444618518|gb|ELV92596.1| ATP-dependent helicase HrpA [Escherichia coli PA2]
 gi|444627846|gb|ELW01596.1| ATP-dependent helicase HrpA [Escherichia coli PA47]
 gi|444627936|gb|ELW01682.1| ATP-dependent helicase HrpA [Escherichia coli PA48]
 gi|444633273|gb|ELW06813.1| ATP-dependent helicase HrpA [Escherichia coli PA8]
 gi|444642884|gb|ELW16056.1| ATP-dependent helicase HrpA [Escherichia coli 7.1982]
 gi|444645650|gb|ELW18711.1| ATP-dependent helicase HrpA [Escherichia coli 99.1781]
 gi|444648702|gb|ELW21619.1| ATP-dependent helicase HrpA [Escherichia coli 99.1762]
 gi|444658055|gb|ELW30518.1| ATP-dependent helicase HrpA [Escherichia coli PA35]
 gi|444663521|gb|ELW35742.1| ATP-dependent helicase HrpA [Escherichia coli 3.4880]
 gi|444669517|gb|ELW41494.1| ATP-dependent helicase HrpA [Escherichia coli 95.0083]
 gi|444671836|gb|ELW43609.1| ATP-dependent helicase HrpA [Escherichia coli 99.0670]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|187730575|ref|YP_001880221.1| ATP-dependent RNA helicase HrpA [Shigella boydii CDC 3083-94]
 gi|187427567|gb|ACD06841.1| ATP-dependent helicase HrpA [Shigella boydii CDC 3083-94]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|420297799|ref|ZP_14799867.1| ATP-dependent helicase HrpA [Escherichia coli TW09109]
 gi|390809011|gb|EIO75820.1| ATP-dependent helicase HrpA [Escherichia coli TW09109]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|416896850|ref|ZP_11926697.1| ATP-dependent helicase HrpA [Escherichia coli STEC_7v]
 gi|327254058|gb|EGE65687.1| ATP-dependent helicase HrpA [Escherichia coli STEC_7v]
          Length = 1281

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|416344669|ref|ZP_11678524.1| ATP-dependent helicase hrpA [Escherichia coli EC4100B]
 gi|419354699|ref|ZP_13895970.1| ATP-dependent helicase HrpA [Escherichia coli DEC13C]
 gi|419364938|ref|ZP_13906108.1| ATP-dependent helicase HrpA [Escherichia coli DEC13E]
 gi|432809037|ref|ZP_20042942.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE101]
 gi|320199420|gb|EFW74011.1| ATP-dependent helicase hrpA [Escherichia coli EC4100B]
 gi|378203961|gb|EHX64378.1| ATP-dependent helicase HrpA [Escherichia coli DEC13C]
 gi|378215719|gb|EHX76013.1| ATP-dependent helicase HrpA [Escherichia coli DEC13E]
 gi|431363928|gb|ELG50474.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE101]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|291282514|ref|YP_003499332.1| HrpA-like helicase [Escherichia coli O55:H7 str. CB9615]
 gi|387506625|ref|YP_006158881.1| ATP-dependent RNA helicase HrpA [Escherichia coli O55:H7 str.
           RM12579]
 gi|416794589|ref|ZP_11883024.1| ATP-dependent RNA helicase HrpA [Escherichia coli O157:H- str.
           493-89]
 gi|416806370|ref|ZP_11887874.1| ATP-dependent RNA helicase HrpA [Escherichia coli O157:H- str. H
           2687]
 gi|416826568|ref|ZP_11897166.1| ATP-dependent RNA helicase HrpA [Escherichia coli O55:H7 str. USDA
           5905]
 gi|419114481|ref|ZP_13659507.1| ATP-dependent helicase HrpA [Escherichia coli DEC5A]
 gi|419125846|ref|ZP_13670737.1| ATP-dependent helicase HrpA [Escherichia coli DEC5C]
 gi|419131286|ref|ZP_13676130.1| ATP-dependent helicase HrpA [Escherichia coli DEC5D]
 gi|420280085|ref|ZP_14782339.1| ATP-dependent helicase HrpA [Escherichia coli TW06591]
 gi|425248582|ref|ZP_18641623.1| ATP-dependent helicase HrpA [Escherichia coli 5905]
 gi|425266840|ref|ZP_18658583.1| ATP-dependent helicase HrpA [Escherichia coli 5412]
 gi|290762387|gb|ADD56348.1| HrpA-like helicase [Escherichia coli O55:H7 str. CB9615]
 gi|320642376|gb|EFX11662.1| ATP-dependent RNA helicase HrpA [Escherichia coli O157:H- str.
           493-89]
 gi|320647732|gb|EFX16477.1| ATP-dependent RNA helicase HrpA [Escherichia coli O157:H- str. H
           2687]
 gi|320659006|gb|EFX26629.1| ATP-dependent RNA helicase HrpA [Escherichia coli O55:H7 str. USDA
           5905]
 gi|374358619|gb|AEZ40326.1| ATP-dependent RNA helicase HrpA [Escherichia coli O55:H7 str.
           RM12579]
 gi|377963062|gb|EHV26510.1| ATP-dependent helicase HrpA [Escherichia coli DEC5A]
 gi|377976807|gb|EHV40109.1| ATP-dependent helicase HrpA [Escherichia coli DEC5C]
 gi|377977652|gb|EHV40936.1| ATP-dependent helicase HrpA [Escherichia coli DEC5D]
 gi|390783434|gb|EIO51036.1| ATP-dependent helicase HrpA [Escherichia coli TW06591]
 gi|408167567|gb|EKH95078.1| ATP-dependent helicase HrpA [Escherichia coli 5905]
 gi|408185773|gb|EKI11901.1| ATP-dependent helicase HrpA [Escherichia coli 5412]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|218700087|ref|YP_002407716.1| ATP-dependent RNA helicase HrpA [Escherichia coli IAI39]
 gi|218370073|emb|CAR17849.1| ATP-dependent helicase [Escherichia coli IAI39]
          Length = 1281

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|432553445|ref|ZP_19790173.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE47]
 gi|431085151|gb|ELD91265.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE47]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|419914861|ref|ZP_14433243.1| ATP-dependent RNA helicase HrpA [Escherichia coli KD1]
 gi|388385368|gb|EIL47056.1| ATP-dependent RNA helicase HrpA [Escherichia coli KD1]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|419075081|ref|ZP_13620624.1| ATP-dependent helicase HrpA [Escherichia coli DEC3F]
 gi|377925891|gb|EHU89827.1| ATP-dependent helicase HrpA [Escherichia coli DEC3F]
          Length = 1206

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 86  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 145

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 146 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 198

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 199 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 254

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 255 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 314

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 315 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 374

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 375 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 434

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 435 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 493

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 494 YLRVREWQDIYTQLRQVVKELGI 516



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 307 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 366

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 367 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 426

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 427 ITSALSIQ--DPRER 439



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 56  VVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLV 112
           +VI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A  +++ R+A E  ++    +
Sbjct: 1   MVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCI 60

Query: 113 GYQIRFEKHRREKTKIVFITEGLLL 137
           GY++RF  H  + T +  +T+G+LL
Sbjct: 61  GYKVRFSDHVSDNTMVKLMTDGILL 85



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 86   AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 145

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 146  HFNNAPIIEVSGRT 159


>gi|300939165|ref|ZP_07153851.1| ATP-dependent helicase HrpA [Escherichia coli MS 21-1]
 gi|300455938|gb|EFK19431.1| ATP-dependent helicase HrpA [Escherichia coli MS 21-1]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|269102582|ref|ZP_06155279.1| putative ATP-dependent helicase HrpA [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162480|gb|EEZ40976.1| putative ATP-dependent helicase HrpA [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 1278

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 159/440 (36%), Positives = 250/440 (56%), Gaps = 25/440 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 160 AEIQHDRYLNQYDTIIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPERFSK 219

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+ + Y PIVE  D T  ++L+      I   +D+     + GD
Sbjct: 220 HFNN-APIIEVSGRTYPVDVRYRPIVEDSDDTDRDQLEA-----IFDAVDELCDEGQ-GD 272

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A ++   K +   ++PL + LS  EQ+RVF   P   R+ ++ST
Sbjct: 273 ILIFMNGEREIRDTADALEK--RKLRDTEIVPLFARLSAGEQNRVFQ--PHTGRRIVLST 328

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 329 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVQEGIC 388

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR 
Sbjct: 389 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTAIGLGDIQAFPFVEAPDNRNIQDGVRL 448

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D ++R+TS+GR L+ LP+D  L +M++     + +  V+ +A+ LS+Q
Sbjct: 449 LEELGAINANAKDPRKRLTSVGRQLARLPIDPRLARMVLEAPKNNALREVMIIASALSIQ 508

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRV-----RSKKWCKRRG 717
            P      +    +   +       D +T +N    W  V++ +      + +K CK+  
Sbjct: 509 DPRERPMEKQQASDEKHRRFYDKESDFMTFVNL---WDYVQEQQKALSGNQFRKQCKKDY 565

Query: 718 IEEQRFYEVTKLRSQFKQVL 737
           +   R  E   +  Q +QV+
Sbjct: 566 LNYLRIREWQDIHFQVRQVV 585



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 83/135 (61%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 381 GRVQEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTAIGLGDIQAFPFVEAPDNR 440

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D ++R+T++GR L+ LP+D  L +M++     + +  +++
Sbjct: 441 NIQDGVRLLEELGAINANAKDPRKRLTSVGRQLARLPIDPRLARMVLEAPKNNALREVMI 500

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 501 IASALSIQ--DPRER 513



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 76/124 (61%), Gaps = 10/124 (8%)

Query: 24  KFSTLMKIRETQNS-------LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV 76
           K  +++++R TQ         LPV+Q K +I + +   +VVI+AG+TG GK+TQ+P+  +
Sbjct: 36  KSMSVVELRRTQRPTVTYPELLPVSQKKDDIAEAIKHNQVVIVAGETGSGKTTQLPKICL 95

Query: 77  QAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITE 133
           + G      I  TQPRR+A  S++ R+A E   +  + VGY++RF     ++++I  +T+
Sbjct: 96  ELGRGVKGMIGHTQPRRLAARSVASRIAEELECEMGSYVGYKVRFNDQVSDRSQIKLMTD 155

Query: 134 GLLL 137
           G+LL
Sbjct: 156 GILL 159



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 160  AEIQHDRYLNQYDTIIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPERFSK 219

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 220  HFNNAPIIEVSGRT 233


>gi|191165099|ref|ZP_03026943.1| ATP-dependent helicase HrpA [Escherichia coli B7A]
 gi|190904871|gb|EDV64576.1| ATP-dependent helicase HrpA [Escherichia coli B7A]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|414576717|ref|ZP_11433899.1| ATP-dependent helicase HrpA [Shigella sonnei 3233-85]
 gi|418265671|ref|ZP_12885489.1| ATP-dependent helicase HrpA [Shigella sonnei str. Moseley]
 gi|420358683|ref|ZP_14859665.1| ATP-dependent helicase HrpA [Shigella sonnei 3226-85]
 gi|420363488|ref|ZP_14864381.1| ATP-dependent helicase HrpA [Shigella sonnei 4822-66]
 gi|391283777|gb|EIQ42389.1| ATP-dependent helicase HrpA [Shigella sonnei 3226-85]
 gi|391284470|gb|EIQ43065.1| ATP-dependent helicase HrpA [Shigella sonnei 3233-85]
 gi|391294642|gb|EIQ52850.1| ATP-dependent helicase HrpA [Shigella sonnei 4822-66]
 gi|397900696|gb|EJL17053.1| ATP-dependent helicase HrpA [Shigella sonnei str. Moseley]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|419945801|ref|ZP_14462233.1| ATP-dependent RNA helicase HrpA, partial [Escherichia coli HM605]
 gi|388414619|gb|EIL74570.1| ATP-dependent RNA helicase HrpA, partial [Escherichia coli HM605]
          Length = 1158

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 38  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 97

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 98  HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 150

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 151 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 206

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 207 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 266

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 267 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 326

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 327 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 386

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 387 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 445

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 446 YLRVREWQDIYTQLRQVVKELGI 468



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 259 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 318

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 319 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 378

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 379 ITSALSIQ--DPRER 391



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 38   AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 97

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 98   HFNNAPIIEVSGRT 111


>gi|422978335|ref|ZP_16977612.1| ATP-dependent RNA helicase hrpA [Escherichia coli TA124]
 gi|371592717|gb|EHN81613.1| ATP-dependent RNA helicase hrpA [Escherichia coli TA124]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|293414748|ref|ZP_06657397.1| ATP-dependent helicase HrpA [Escherichia coli B185]
 gi|291434806|gb|EFF07779.1| ATP-dependent helicase HrpA [Escherichia coli B185]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|194436655|ref|ZP_03068756.1| ATP-dependent helicase HrpA [Escherichia coli 101-1]
 gi|300927676|ref|ZP_07143245.1| ATP-dependent helicase HrpA [Escherichia coli MS 187-1]
 gi|417121258|ref|ZP_11970686.1| ATP-dependent helicase HrpA [Escherichia coli 97.0246]
 gi|422789937|ref|ZP_16842642.1| ATP-dependent helicase HrpA [Escherichia coli TA007]
 gi|442596059|ref|ZP_21013886.1| ATP-dependent helicase HrpA [Escherichia coli O5:K4(L):H4 str. ATCC
           23502]
 gi|194424687|gb|EDX40673.1| ATP-dependent helicase HrpA [Escherichia coli 101-1]
 gi|300464286|gb|EFK27779.1| ATP-dependent helicase HrpA [Escherichia coli MS 187-1]
 gi|323973614|gb|EGB68795.1| ATP-dependent helicase HrpA [Escherichia coli TA007]
 gi|386148110|gb|EIG94547.1| ATP-dependent helicase HrpA [Escherichia coli 97.0246]
 gi|441655590|emb|CCP99799.1| ATP-dependent helicase HrpA [Escherichia coli O5:K4(L):H4 str. ATCC
           23502]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|419169424|ref|ZP_13713817.1| ATP-dependent helicase HrpA [Escherichia coli DEC7A]
 gi|419180450|ref|ZP_13724071.1| ATP-dependent helicase HrpA [Escherichia coli DEC7C]
 gi|419185962|ref|ZP_13729483.1| ATP-dependent helicase HrpA [Escherichia coli DEC7D]
 gi|419191234|ref|ZP_13734700.1| ATP-dependent helicase HrpA [Escherichia coli DEC7E]
 gi|420385304|ref|ZP_14884670.1| ATP-dependent helicase HrpA [Escherichia coli EPECa12]
 gi|433129801|ref|ZP_20315256.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE163]
 gi|433134598|ref|ZP_20319962.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE166]
 gi|378017851|gb|EHV80721.1| ATP-dependent helicase HrpA [Escherichia coli DEC7A]
 gi|378026371|gb|EHV89010.1| ATP-dependent helicase HrpA [Escherichia coli DEC7C]
 gi|378031386|gb|EHV93974.1| ATP-dependent helicase HrpA [Escherichia coli DEC7D]
 gi|378041297|gb|EHW03760.1| ATP-dependent helicase HrpA [Escherichia coli DEC7E]
 gi|391307236|gb|EIQ64974.1| ATP-dependent helicase HrpA [Escherichia coli EPECa12]
 gi|431649031|gb|ELJ16396.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE163]
 gi|431659993|gb|ELJ26882.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE166]
          Length = 1300

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|417623073|ref|ZP_12273381.1| ATP-dependent helicase HrpA [Escherichia coli STEC_H.1.8]
 gi|345380158|gb|EGX12058.1| ATP-dependent helicase HrpA [Escherichia coli STEC_H.1.8]
          Length = 1281

 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|306813612|ref|ZP_07447795.1| ATP-dependent RNA helicase HrpA [Escherichia coli NC101]
 gi|432381124|ref|ZP_19624071.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE15]
 gi|432386880|ref|ZP_19629772.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE16]
 gi|432513683|ref|ZP_19750911.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE224]
 gi|432611166|ref|ZP_19847330.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE72]
 gi|432645929|ref|ZP_19881722.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE86]
 gi|432655529|ref|ZP_19891237.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE93]
 gi|432698806|ref|ZP_19933966.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE169]
 gi|432745425|ref|ZP_19980109.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE43]
 gi|432904561|ref|ZP_20113534.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE194]
 gi|432937527|ref|ZP_20135993.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE183]
 gi|432971601|ref|ZP_20160473.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE207]
 gi|432985134|ref|ZP_20173862.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE215]
 gi|433038379|ref|ZP_20225986.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE113]
 gi|433082322|ref|ZP_20268792.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE133]
 gi|433100914|ref|ZP_20287015.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE145]
 gi|433143975|ref|ZP_20329132.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE168]
 gi|433188149|ref|ZP_20372257.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE88]
 gi|305853059|gb|EFM53503.1| ATP-dependent RNA helicase HrpA [Escherichia coli NC101]
 gi|430907765|gb|ELC29261.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE16]
 gi|430909416|gb|ELC30790.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE15]
 gi|431043207|gb|ELD53551.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE224]
 gi|431149218|gb|ELE50484.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE72]
 gi|431181381|gb|ELE81247.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE86]
 gi|431192722|gb|ELE92067.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE93]
 gi|431244937|gb|ELF39235.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE169]
 gi|431292737|gb|ELF83121.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE43]
 gi|431433591|gb|ELH15248.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE194]
 gi|431464916|gb|ELH45030.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE183]
 gi|431483926|gb|ELH63608.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE207]
 gi|431501849|gb|ELH80824.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE215]
 gi|431552865|gb|ELI26809.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE113]
 gi|431604063|gb|ELI73477.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE133]
 gi|431620861|gb|ELI89684.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE145]
 gi|431663801|gb|ELJ30555.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE168]
 gi|431707223|gb|ELJ71769.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE88]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTIVKLMTDGILL 179



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|162138443|ref|YP_540644.2| ATP-dependent RNA helicase HrpA [Escherichia coli UTI89]
 gi|218558349|ref|YP_002391262.1| ATP-dependent RNA helicase HrpA [Escherichia coli S88]
 gi|218365118|emb|CAR02827.1| ATP-dependent helicase [Escherichia coli S88]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|432616429|ref|ZP_19852551.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE75]
 gi|431155329|gb|ELE56086.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE75]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|254489827|ref|ZP_05103022.1| ATP-dependent helicase HrpA [Methylophaga thiooxidans DMS010]
 gi|224464912|gb|EEF81166.1| ATP-dependent helicase HrpA [Methylophaga thiooxydans DMS010]
          Length = 1297

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 155/436 (35%), Positives = 240/436 (55%), Gaps = 11/436 (2%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D FL+ YD L++DE HER L+ DFLLG IK LL    ++K+I+ SATI+ E F  
Sbjct: 176 AETQNDKFLNQYDTLIIDEAHERSLNIDFLLGYIKQLLPKRPDLKVIITSATIDTERFSK 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A +I+V GR YP+ + Y P+   D    +  D      I++ +D+   R   GDV
Sbjct: 236 HFDN-APVIEVSGRTYPVDVRYRPLQTPD---EDSPDYDMVQGIVAAVDE-LCREGPGDV 290

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIF++G  +I  +  A ++++       +LPL +  S  EQ+RVF     G R+ I++TN
Sbjct: 291 LIFLAGERDIRDVSEALRKHHPPQTE--ILPLFARQSASEQNRVFKTG--GQRRIILATN 346

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GIR+VVD G  +   Y V  K+  L    IS++SA QR GR GR   G+C 
Sbjct: 347 VAETSLTVPGIRYVVDPGNARISRYSVRNKVQRLPIEKISQSSANQRAGRCGRVAAGICI 406

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY EE ++    ++ PEI R ++ S++L +  + LGD  KFPF+  PP + I    R L
Sbjct: 407 RLYDEEDFTARPAFTDPEILRTNLGSVILQMSALKLGDPAKFPFINPPPQKMINDGYRLL 466

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            +  A+D + R+T  GR L+ LP+D  + +ML+ G+  H +  VL +A+ LS+Q P    
Sbjct: 467 DELNAVDRQRRITETGRQLAKLPIDPRIARMLLAGADHHSLTEVLIIASALSIQDPRERP 526

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRFYEV 726
             +    + A  + +    D ++ +  +  +   KK   ++K  K+CK   +   R  E 
Sbjct: 527 MDKQQAADEAHSKYKDERSDFVSFIKLWNLYHEKKKHLSQNKLRKYCKENFLSFLRLREW 586

Query: 727 TKLRSQFKQVLGDSGL 742
             +  Q    LG+ GL
Sbjct: 587 HDIHQQLHIQLGELGL 602



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 2/129 (1%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLY EE ++    ++ PEI R ++ S++L +  + LGD  KFPF+  PP + 
Sbjct: 399 RVAAGICIRLYDEEDFTARPAFTDPEILRTNLGSVILQMSALKLGDPAKFPFINPPPQKM 458

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           I    R L +  A+D + R+T  GR L+ LP+D  + +ML+ G+  H +  +L++  AL+
Sbjct: 459 INDGYRLLDELNAVDRQRRITETGRQLAKLPIDPRIARMLLAGADHHSLTEVLIIASALS 518

Query: 929 FGAIDSKER 937
               D +ER
Sbjct: 519 IQ--DPRER 525



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 64/104 (61%), Gaps = 4/104 (3%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV + ++EI   +   +V+I+ G+TG GK+TQ+P+  ++ G      I  TQPRRIA  
Sbjct: 72  LPVIERREEIAKAIQDNQVIILCGETGSGKTTQLPKICLELGRGVTGLIGHTQPRRIAAR 131

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKH-RREKTKIVFITEGLLL 137
           +++ R+A E  S+    VGY++RF      E++ +  +T+G+LL
Sbjct: 132 TVATRIAEELGSEIGKTVGYKVRFHDQVNAEQSYVKLMTDGILL 175



 Score = 66.6 bits (161), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 45/69 (65%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D FL+ YD L++DE HER L+ DFLLG IK LL    ++K+I+ SATI+ E F  +F+  
Sbjct: 181  DKFLNQYDTLIIDEAHERSLNIDFLLGYIKQLLPKRPDLKVIITSATIDTERFSKHFDNA 240

Query: 1179 AKDLLSGST 1187
                +SG T
Sbjct: 241  PVIEVSGRT 249



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            +   D FL+ YD LI+DE HER L  DFLLG I
Sbjct: 176 AETQNDKFLNQYDTLIIDEAHERSLNIDFLLGYI 209



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 22/144 (15%)

Query: 1018 DTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 1077
            D   LLD      A+D + R+T  GR L+ LP+D  + +ML+ G+  H +  +L++  AL
Sbjct: 461  DGYRLLD---ELNAVDRQRRITETGRQLAKLPIDPRIARMLLAGADHHSLTEVLIIASAL 517

Query: 1078 NFVHHSE-----EEEEEEAGERLESMDANEVEF----RLKHDPKQ-------VQVAADNF 1121
            +     E     ++  +EA  + +   ++ V F     L H+ K+        +   +NF
Sbjct: 518  SIQDPRERPMDKQQAADEAHSKYKDERSDFVSFIKLWNLYHEKKKHLSQNKLRKYCKENF 577

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLG 1145
            LS    L L E H+ H      LG
Sbjct: 578  LS---FLRLREWHDIHQQLHIQLG 598



 Score = 41.2 bits (95), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 968  DTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 1027
            D   LLD      A+D + R+T  GR L+ LP+D  + +ML+ G+  H +  +L++  AL
Sbjct: 461  DGYRLLD---ELNAVDRQRRITETGRQLAKLPIDPRIARMLLAGADHHSLTEVLIIASAL 517

Query: 1028 NFGAIDSKER 1037
            +    D +ER
Sbjct: 518  SIQ--DPRER 525


>gi|218689347|ref|YP_002397559.1| ATP-dependent RNA helicase HrpA [Escherichia coli ED1a]
 gi|218426911|emb|CAR07769.2| ATP-dependent helicase [Escherichia coli ED1a]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|157160891|ref|YP_001458209.1| ATP-dependent RNA helicase HrpA [Escherichia coli HS]
 gi|157066571|gb|ABV05826.1| ATP-dependent helicase HrpA [Escherichia coli HS]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRIDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|417638756|ref|ZP_12288915.1| ATP-dependent helicase HrpA [Escherichia coli TX1999]
 gi|345394554|gb|EGX24314.1| ATP-dependent helicase HrpA [Escherichia coli TX1999]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|386613907|ref|YP_006133573.1| ATP-dependent helicase HrpA [Escherichia coli UMNK88]
 gi|332343076|gb|AEE56410.1| ATP-dependent helicase HrpA [Escherichia coli UMNK88]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|300823262|ref|ZP_07103394.1| ATP-dependent helicase HrpA [Escherichia coli MS 119-7]
 gi|417266312|ref|ZP_12053680.1| ATP-dependent helicase HrpA [Escherichia coli 3.3884]
 gi|423710483|ref|ZP_17684831.1| ATP-dependent RNA helicase hrpA [Escherichia coli B799]
 gi|432376576|ref|ZP_19619575.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE12]
 gi|432834430|ref|ZP_20067971.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE136]
 gi|300524226|gb|EFK45295.1| ATP-dependent helicase HrpA [Escherichia coli MS 119-7]
 gi|385704233|gb|EIG41314.1| ATP-dependent RNA helicase hrpA [Escherichia coli B799]
 gi|386231122|gb|EII58470.1| ATP-dependent helicase HrpA [Escherichia coli 3.3884]
 gi|430899800|gb|ELC21893.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE12]
 gi|431386266|gb|ELG70223.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE136]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|218704882|ref|YP_002412401.1| ATP-dependent RNA helicase HrpA [Escherichia coli UMN026]
 gi|417586288|ref|ZP_12237061.1| ATP-dependent helicase HrpA [Escherichia coli STEC_C165-02]
 gi|218431979|emb|CAR12864.1| ATP-dependent helicase [Escherichia coli UMN026]
 gi|345339444|gb|EGW71870.1| ATP-dependent helicase HrpA [Escherichia coli STEC_C165-02]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|346725924|ref|YP_004852593.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
           F1]
 gi|346650671|gb|AEO43295.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
           F1]
          Length = 1373

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 249/445 (55%), Gaps = 34/445 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LSSYD +++DE HER L+ DFLLG +K LL   +++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRSDLKLIVTSATIDTERFAR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGP--------YIRILSIIDKKY 420
           +F+  A +I V GR +P+++ Y P+ E D   S+  + G            I++ ID+  
Sbjct: 240 HFDD-APVISVEGRTFPVEVRYRPL-EGDTGDSDDGEHGSGRDGERSVNDAIVAAIDEIT 297

Query: 421 PRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QDRVF+  P 
Sbjct: 298 RIDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDRVFNPGPR 353

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
             R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR GR
Sbjct: 354 --RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMGR 411

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
            GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP  
Sbjct: 412 CGRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDE 471

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
             +    + L + GAID++ R+T+ GR ++ LPVD+ L +MLV       +  ++ +AA 
Sbjct: 472 RAVADGWQQLLELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAF 531

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDRVRSK- 710
           L +Q P      R P+   A     +   D        L + +AY++   V +D  +SK 
Sbjct: 532 LGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDLTQSKL 584

Query: 711 -KWCKRRGIEEQRFYEVTKLRSQFK 734
             WC R  +   R  E  +L  Q +
Sbjct: 585 RDWCNRHFLGFLRMREWRELHRQLR 609



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 413 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 472

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 473 AVADGWQQLLELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 530

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 531 FLGIQDPRER 540



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           + LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  DQLPIAREAERIIALIRNHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +     VG+Q+RF     ++++I F+T+G+LL
Sbjct: 135 ARAVAARVADELKTPLGTTVGFQVRFTDRVSDQSRIKFMTDGILL 179



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 47/63 (74%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LSSYD +++DE HER L+ DFLLG +K LL   +++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRSDLKLIVTSATIDTERFAR 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 45.4 bits (106), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LSSYD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYL 213



 Score = 44.3 bits (103), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 482  LELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAAFLGIQDPRE 539

Query: 1037 R 1037
            R
Sbjct: 540  R 540



 Score = 41.6 bits (96), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M+++
Sbjct: 482  LELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 528


>gi|417112751|ref|ZP_11964671.1| ATP-dependent helicase HrpA [Escherichia coli 1.2741]
 gi|422803471|ref|ZP_16851958.1| ATP-dependent helicase HrpA [Escherichia coli M863]
 gi|323963960|gb|EGB59452.1| ATP-dependent helicase HrpA [Escherichia coli M863]
 gi|386142361|gb|EIG83499.1| ATP-dependent helicase HrpA [Escherichia coli 1.2741]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|260843725|ref|YP_003221503.1| ATP-dependent helicase HrpA [Escherichia coli O103:H2 str. 12009]
 gi|415794792|ref|ZP_11496559.1| ATP-dependent helicase HrpA [Escherichia coli E128010]
 gi|419871831|ref|ZP_14393879.1| ATP-dependent RNA helicase HrpA [Escherichia coli O103:H2 str.
           CVM9450]
 gi|257758872|dbj|BAI30369.1| ATP-dependent helicase HrpA [Escherichia coli O103:H2 str. 12009]
 gi|323163562|gb|EFZ49387.1| ATP-dependent helicase HrpA [Escherichia coli E128010]
 gi|388336034|gb|EIL02582.1| ATP-dependent RNA helicase HrpA [Escherichia coli O103:H2 str.
           CVM9450]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|254161470|ref|YP_003044578.1| ATP-dependent RNA helicase HrpA [Escherichia coli B str. REL606]
 gi|254288275|ref|YP_003054023.1| ATP-dependent helicase [Escherichia coli BL21(DE3)]
 gi|387823366|ref|YP_006094217.1| ATP-dependent helicase [Escherichia coli BL21(DE3)]
 gi|253973371|gb|ACT39042.1| ATP-dependent helicase [Escherichia coli B str. REL606]
 gi|253977582|gb|ACT43252.1| ATP-dependent helicase [Escherichia coli BL21(DE3)]
 gi|313848627|emb|CAQ31897.2| ATP-dependent helicase [Escherichia coli BL21(DE3)]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSNHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|417596489|ref|ZP_12247142.1| ATP-dependent helicase HrpA [Escherichia coli 3030-1]
 gi|345357199|gb|EGW89398.1| ATP-dependent helicase HrpA [Escherichia coli 3030-1]
          Length = 815

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 383 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 442

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 443 IQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 502

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 503 TSALSIQ--DPRER 514



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|415811989|ref|ZP_11504265.1| ATP-dependent helicase HrpA [Escherichia coli LT-68]
 gi|323172796|gb|EFZ58428.1| ATP-dependent helicase HrpA [Escherichia coli LT-68]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|429887187|ref|ZP_19368712.1| ATP-dependent helicase HrpA [Vibrio cholerae PS15]
 gi|429225839|gb|EKY32037.1| ATP-dependent helicase HrpA [Vibrio cholerae PS15]
          Length = 1309

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 253/450 (56%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++       +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEAPKLGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D LT +N +  ++G ++  + S ++   CK   + 
Sbjct: 540 DPRERPSDKQQSADDKHRRFNHEDSDFLTFVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
             R  E   + +Q  Q   + G  + D PG
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGFKLNDEPG 628



 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++       +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEAPKLGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAKAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|15801734|ref|NP_287752.1| ATP-dependent RNA helicase HrpA [Escherichia coli O157:H7 str.
           EDL933]
 gi|15831269|ref|NP_310042.1| ATP-dependent RNA helicase HrpA [Escherichia coli O157:H7 str.
           Sakai]
 gi|387882426|ref|YP_006312728.1| ATP-dependent RNA helicase HrpA [Escherichia coli Xuzhou21]
 gi|424096347|ref|ZP_17831853.1| ATP-dependent helicase HrpA [Escherichia coli FRIK1985]
 gi|424133799|ref|ZP_17866409.1| ATP-dependent helicase HrpA [Escherichia coli PA10]
 gi|12515300|gb|AAG56366.1|AE005364_11 helicase, ATP-dependent [Escherichia coli O157:H7 str. EDL933]
 gi|13361481|dbj|BAB35438.1| ATP-dependent helicase HrpA [Escherichia coli O157:H7 str. Sakai]
 gi|209771190|gb|ACI83907.1| ATP-dependent helicase HrpA [Escherichia coli]
 gi|209771192|gb|ACI83908.1| ATP-dependent helicase HrpA [Escherichia coli]
 gi|209771196|gb|ACI83910.1| ATP-dependent helicase HrpA [Escherichia coli]
 gi|386795884|gb|AFJ28918.1| ATP-dependent RNA helicase HrpA [Escherichia coli Xuzhou21]
 gi|390667171|gb|EIN44200.1| ATP-dependent helicase HrpA [Escherichia coli FRIK1985]
 gi|390703630|gb|EIN77626.1| ATP-dependent helicase HrpA [Escherichia coli PA10]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|433325231|ref|ZP_20402403.1| ATP-dependent RNA helicase HrpA [Escherichia coli J96]
 gi|432346424|gb|ELL40907.1| ATP-dependent RNA helicase HrpA [Escherichia coli J96]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|386389473|ref|ZP_10074287.1| ATP-dependent helicase HrpA [Haemophilus paraphrohaemolyticus
           HK411]
 gi|385695243|gb|EIG25805.1| ATP-dependent helicase HrpA [Haemophilus paraphrohaemolyticus
           HK411]
          Length = 1317

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 244/443 (55%), Gaps = 22/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 199 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 258

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR +P+++ Y PIVE D       D      IL+ +D+      RGD+
Sbjct: 259 HFNN-APIIEVSGRTFPVEVRYRPIVEED-------DQDQLQGILNAVDELQAEG-RGDI 309

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N +     +LPL++ LS EEQ R+F   P  L + I++TN
Sbjct: 310 LIFMNGEREIRDTAEALQKQNLRFTE--ILPLYARLSAEEQQRIFR--PSSLNRIILATN 365

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 366 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 425

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF+++P    ++  +R L
Sbjct: 426 RLYSEEDFNSRPEFTDPEILRTNLASVILQMASLGLSDITAFPFVDSPDVRQVQDGIRLL 485

Query: 609 TQHGA-------IDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +  A          K  +T +GR L+ LP+D  LG+M++  +    +  V+ + + LS+
Sbjct: 486 EELQAFHIRKTKFGEKRELTPIGRQLAQLPIDPRLGRMVIEAAKNGSLHEVMMIVSALSI 545

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  +N +      +K+  ++  +K C++  + 
Sbjct: 546 QDPRERPQEKQQASDEKHRRFADKDSDFLAFVNLWHYIQTQQKELSKNQFRKQCQKDYLN 605

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   +  Q +  + + GL
Sbjct: 606 YLRVREWQDIYHQLRLSVREMGL 628



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF+++P    
Sbjct: 418 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMASLGLSDITAFPFVDSPDVRQ 477

Query: 869 IESSVRSLTQHGA-------IDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           ++  +R L +  A          K  +T +GR L+ LP+D  LG+M++  +    +  ++
Sbjct: 478 VQDGIRLLEELQAFHIRKTKFGEKRELTPIGRQLAQLPIDPRLGRMVIEAAKNGSLHEVM 537

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 538 MIVSALSIQ--DPRER 551



 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACI 94
           LP++  ++EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRRIA  
Sbjct: 96  LPISSRREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRIAAR 155

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  S+    VGY++RF     + T +  +T+G+LL
Sbjct: 156 SVANRIAEELQSEIGATVGYKVRFNDQVSDNTLVKLMTDGILL 198



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +LH   ++K+I+ SATI++E F  
Sbjct: 199  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFSR 258

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 259  HFNNAPIIEVSGRT 272



 Score = 45.1 bits (105), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++  D +L+ YD LI+DE HER L  DF+LG +   LH
Sbjct: 199 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILH 237


>gi|170684173|ref|YP_001743813.1| ATP-dependent RNA helicase HrpA [Escherichia coli SMS-3-5]
 gi|170521891|gb|ACB20069.1| ATP-dependent helicase HrpA [Escherichia coli SMS-3-5]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|167855748|ref|ZP_02478503.1| ATP-dependent RNA helicase [Haemophilus parasuis 29755]
 gi|167853145|gb|EDS24404.1| ATP-dependent RNA helicase [Haemophilus parasuis 29755]
          Length = 1312

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 248/449 (55%), Gaps = 28/449 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +L    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILAKRPDLKVIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y PIVE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+   +     +LPL++ LS  EQ R+F+  P  L + I++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQELRHTE--ILPLYARLSAAEQQRIFN--PSNLNRIILATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRISEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   +++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  +R L
Sbjct: 413 RLYSEEDFNARPQFTDPEILRTNLASVILQMTALGLTDIASFPFVDAPDQRHIQDGIRLL 472

Query: 609 TQHGAID-------------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
            + GA+              S +++T++GR L+ LP+D  LG+M++  +    +  V+ +
Sbjct: 473 EELGALGRDALRVSADARSASLQKLTNIGRQLAQLPIDPRLGRMVIEAAKNGSLHEVMMI 532

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWC 713
            + LS+Q P      +    +   +       D L  +N +      +K+  ++  +K C
Sbjct: 533 VSALSIQDPRERPQEKQQSADDKHRRFADKESDFLAFVNLWHFIQEQQKELTKNQFRKLC 592

Query: 714 KRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
           ++  +   R  E   +  Q +  + + GL
Sbjct: 593 QKDYLNYLRVREWQDIYHQLRLAVREMGL 621



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 81/142 (57%), Gaps = 15/142 (10%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   +++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RISEGICIRLYSEEDFNARPQFTDPEILRTNLASVILQMTALGLTDIASFPFVDAPDQRH 464

Query: 869 IESSVRSLTQHGAID-------------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFH 915
           I+  +R L + GA+              S +++T +GR L+ LP+D  LG+M++  +   
Sbjct: 465 IQDGIRLLEELGALGRDALRVSADARSASLQKLTNIGRQLAQLPIDPRLGRMVIEAAKNG 524

Query: 916 QIDTMLLLDLALNFGAIDSKER 937
            +  ++++  AL+    D +ER
Sbjct: 525 SLHEVMMIVSALSIQ--DPRER 544



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACI 94
           LPV+  + EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRRIA  
Sbjct: 83  LPVSARRDEILKLIAEHQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRIAAR 142

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  S+  + +GY+IRF     + T +  +T+G+LL
Sbjct: 143 SVATRIAEELKSELGSTIGYKIRFNDQISDNTLVKLMTDGILL 185



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +L    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILAKRPDLKVIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D +L+ YD LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYL 219


>gi|300922956|ref|ZP_07139028.1| ATP-dependent helicase HrpA [Escherichia coli MS 182-1]
 gi|301326880|ref|ZP_07220176.1| ATP-dependent helicase HrpA [Escherichia coli MS 78-1]
 gi|422958418|ref|ZP_16970349.1| ATP-dependent RNA helicase hrpA [Escherichia coli H494]
 gi|300420741|gb|EFK04052.1| ATP-dependent helicase HrpA [Escherichia coli MS 182-1]
 gi|300846486|gb|EFK74246.1| ATP-dependent helicase HrpA [Escherichia coli MS 78-1]
 gi|371596689|gb|EHN85524.1| ATP-dependent RNA helicase hrpA [Escherichia coli H494]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|117623665|ref|YP_852578.1| ATP-dependent RNA helicase HrpA [Escherichia coli APEC O1]
 gi|237705394|ref|ZP_04535875.1| ATP-dependent helicase HrpA [Escherichia sp. 3_2_53FAA]
 gi|386599266|ref|YP_006100772.1| ATP-dependent helicase HrpA [Escherichia coli IHE3034]
 gi|386604579|ref|YP_006110879.1| ATP-dependent RNA helicase HrpA [Escherichia coli UM146]
 gi|417084274|ref|ZP_11952028.1| ATP-dependent RNA helicase HrpA [Escherichia coli cloneA_i1]
 gi|422356444|ref|ZP_16437132.1| ATP-dependent helicase HrpA [Escherichia coli MS 110-3]
 gi|422748728|ref|ZP_16802641.1| ATP-dependent helicase HrpA [Escherichia coli H252]
 gi|422754796|ref|ZP_16808621.1| ATP-dependent helicase HrpA [Escherichia coli H263]
 gi|422838612|ref|ZP_16886585.1| ATP-dependent RNA helicase hrpA [Escherichia coli H397]
 gi|432357808|ref|ZP_19601037.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE4]
 gi|432362432|ref|ZP_19605603.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE5]
 gi|432573490|ref|ZP_19809973.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE55]
 gi|432587729|ref|ZP_19824085.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE58]
 gi|432597455|ref|ZP_19833731.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE62]
 gi|432754211|ref|ZP_19988763.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE22]
 gi|432778342|ref|ZP_20012586.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE59]
 gi|432787288|ref|ZP_20021421.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE65]
 gi|432820721|ref|ZP_20054414.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE118]
 gi|432826867|ref|ZP_20060520.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE123]
 gi|433004919|ref|ZP_20193350.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE227]
 gi|433007420|ref|ZP_20195838.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE229]
 gi|433153531|ref|ZP_20338490.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE176]
 gi|433163239|ref|ZP_20347989.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE179]
 gi|433168285|ref|ZP_20352934.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE180]
 gi|91072232|gb|ABE07113.1| ATP-dependent helicase HrpA [Escherichia coli UTI89]
 gi|115512789|gb|ABJ00864.1| ATP-dependent helicase HrpA [Escherichia coli APEC O1]
 gi|226900151|gb|EEH86410.1| ATP-dependent helicase HrpA [Escherichia sp. 3_2_53FAA]
 gi|294493751|gb|ADE92507.1| ATP-dependent helicase HrpA [Escherichia coli IHE3034]
 gi|307627063|gb|ADN71367.1| ATP-dependent RNA helicase HrpA [Escherichia coli UM146]
 gi|315289742|gb|EFU49132.1| ATP-dependent helicase HrpA [Escherichia coli MS 110-3]
 gi|323952699|gb|EGB48568.1| ATP-dependent helicase HrpA [Escherichia coli H252]
 gi|323956827|gb|EGB52560.1| ATP-dependent helicase HrpA [Escherichia coli H263]
 gi|355352136|gb|EHG01321.1| ATP-dependent RNA helicase HrpA [Escherichia coli cloneA_i1]
 gi|371613511|gb|EHO02008.1| ATP-dependent RNA helicase hrpA [Escherichia coli H397]
 gi|430877792|gb|ELC01224.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE4]
 gi|430886971|gb|ELC09798.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE5]
 gi|431109066|gb|ELE13033.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE55]
 gi|431120062|gb|ELE23060.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE58]
 gi|431130322|gb|ELE32405.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE62]
 gi|431303814|gb|ELF92352.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE22]
 gi|431327429|gb|ELG14756.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE59]
 gi|431338575|gb|ELG25653.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE65]
 gi|431369220|gb|ELG55445.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE118]
 gi|431373211|gb|ELG58818.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE123]
 gi|431515391|gb|ELH93215.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE227]
 gi|431523953|gb|ELI00900.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE229]
 gi|431675961|gb|ELJ42086.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE176]
 gi|431689746|gb|ELJ55242.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE179]
 gi|431690704|gb|ELJ56179.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE180]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|419866388|ref|ZP_14388748.1| ATP-dependent RNA helicase HrpA [Escherichia coli O103:H25 str.
           CVM9340]
 gi|388334968|gb|EIL01545.1| ATP-dependent RNA helicase HrpA [Escherichia coli O103:H25 str.
           CVM9340]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|417288921|ref|ZP_12076206.1| ATP-dependent helicase HrpA [Escherichia coli TW07793]
 gi|386247713|gb|EII93886.1| ATP-dependent helicase HrpA [Escherichia coli TW07793]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|422378816|ref|ZP_16459020.1| ATP-dependent helicase HrpA [Escherichia coli MS 57-2]
 gi|432732161|ref|ZP_19966995.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE45]
 gi|432759242|ref|ZP_19993739.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE46]
 gi|324009944|gb|EGB79163.1| ATP-dependent helicase HrpA [Escherichia coli MS 57-2]
 gi|431276243|gb|ELF67264.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE45]
 gi|431309426|gb|ELF97623.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE46]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|222156161|ref|YP_002556300.1| ATP-dependent RNA helicase hrpA [Escherichia coli LF82]
 gi|387616738|ref|YP_006119760.1| ATP-dependent RNA helicase HrpA [Escherichia coli O83:H1 str. NRG
           857C]
 gi|222033166|emb|CAP75906.1| ATP-dependent RNA helicase hrpA [Escherichia coli LF82]
 gi|312945999|gb|ADR26826.1| ATP-dependent RNA helicase HrpA [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPIDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432868230|ref|ZP_20089428.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE147]
 gi|431411287|gb|ELG94420.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE147]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 161/444 (36%), Positives = 248/444 (55%), Gaps = 23/444 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH-YAPEGLRKCIVS 486
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF  Y+    R+ +++
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQSYSG---RRIVLA 347

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+
Sbjct: 348 TNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGI 407

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR
Sbjct: 408 CIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVR 467

Query: 607 SLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+
Sbjct: 468 LLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSI 527

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGI 718
           Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   +
Sbjct: 528 QDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYL 586

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL 742
              R  E   + +Q +QV+ + G+
Sbjct: 587 NYLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|450213986|ref|ZP_21895147.1| ATP-dependent RNA helicase HrpA [Escherichia coli O08]
 gi|449320275|gb|EMD10310.1| ATP-dependent RNA helicase HrpA [Escherichia coli O08]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|380797689|gb|AFE70720.1| putative ATP-dependent RNA helicase DHX33 isoform 1, partial
           [Macaca mulatta]
          Length = 656

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 153/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 127 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVD 186

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 187 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 234

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 235 PPSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPALLVLPLYASLPYAQQLRVFQGA 292

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 293 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 352

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 353 GRAGREDSGICYRLYTEEEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 412

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 413 SPDHIQAAIAQLDLLGALEHKDDQLSLTPIGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 472

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 473 TIVSLLSVDSVLHNPPSRREEVQGVRKKFVSSEGDHMTLLNIYRTFKNLGGNKD------ 526

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WCK   +  +    V ++R+Q + +
Sbjct: 527 WCKENFVNSKNMMLVAEVRAQLRDI 551



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 20  RRSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 79

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RF+    E T+I F+T+G+LLR+
Sbjct: 80  AAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLRE 127



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 357 REDSGICYRLYTEEEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 416

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 417 IQAAIAQLDLLGALEHKDDQLSLTPIGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 474



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 130  SDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVDLFS 189

Query: 1173 TYFN 1176
             YFN
Sbjct: 190  QYFN 193


>gi|419700259|ref|ZP_14227866.1| ATP-dependent RNA helicase HrpA [Escherichia coli SCI-07]
 gi|380348450|gb|EIA36731.1| ATP-dependent RNA helicase HrpA [Escherichia coli SCI-07]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|182437677|ref|YP_001825396.1| ATP-dependent helicase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466193|dbj|BAG20713.1| putative ATP-dependent helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 1310

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 163/455 (35%), Positives = 247/455 (54%), Gaps = 22/455 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 177 AEIQTDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPRRPDLKVVITSATIDPERFAR 236

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDK---KYPRTER 425
           +F   A I++V GR YP+++ Y P++E D   SE  D      I   +D+   + P    
Sbjct: 237 HFGE-APIVEVSGRTYPVEVRYRPLLEED---SEDSDRDQITAICDAVDELGHEAP---- 288

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GDVL+F+SG  EI     A  + N +     VLPL++ LS  EQ RVF       R+ ++
Sbjct: 289 GDVLVFLSGEREIRDTADALNKRNLRHTE--VLPLYARLSHAEQHRVFQR--HTGRRIVL 344

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G
Sbjct: 345 ATNVAETSLTVPGIKYVIDPGNARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDG 404

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +   GLGD+ KFPF++ P   NI   V
Sbjct: 405 ICIRLYSEDDFVTRPEFTDPEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGV 464

Query: 606 RSLTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           + L + GA+     D K+R+T LGR LS LPVD  L +M++          V+ +AA LS
Sbjct: 465 QLLQELGALDPAEKDPKKRLTPLGRKLSQLPVDPRLARMVIEADRNGCAREVMVIAAALS 524

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGI 718
           +Q P    A +    +      +    D L  LN +      +K+R  S  ++ CK+  +
Sbjct: 525 IQDPRERPAEKQTQADQNHARFKDETSDFLAYLNLWAYVREQQKERGSSSFRRMCKQEYL 584

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASL 753
              R  E   + +Q + V    G+  + P  +AS+
Sbjct: 585 NFLRIREWQDIYAQLRTVAKQMGITVEEPRAEASI 619



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSE+ +    E++ PEI R ++ S++L +   GLGD+ KFPF++ P   
Sbjct: 399 GRTSDGICIRLYSEDDFVTRPEFTDPEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHR 458

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI   V+ L + GA+     D K+R+T LGR LS LPVD  L +M++          +++
Sbjct: 459 NIRDGVQLLQELGALDPAEKDPKKRLTPLGRKLSQLPVDPRLARMVIEADRNGCAREVMV 518

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 519 IAAALSIQ--DPRER 531



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 69/106 (65%), Gaps = 4/106 (3%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           + LPV+Q K EI++ +   +VVI+AG+TG GK+TQIP+  ++ G      I  TQPRRIA
Sbjct: 71  DELPVSQKKDEILEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGMIGHTQPRRIA 130

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLL 137
             ++++RVA E  +     VG+++RF ++   E T +  +T+G+LL
Sbjct: 131 ARTVAERVADELKTPLGETVGWKVRFTDQVNPESTYLKLMTDGILL 176



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 177  AEIQTDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPRRPDLKVVITSATIDPERFAR 236

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 237  HFGEAPIVEVSGRT 250


>gi|417628436|ref|ZP_12278678.1| ATP-dependent helicase HrpA [Escherichia coli STEC_MHI813]
 gi|345375269|gb|EGX07217.1| ATP-dependent helicase HrpA [Escherichia coli STEC_MHI813]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|432831351|ref|ZP_20064931.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE135]
 gi|431378046|gb|ELG63038.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE135]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432372310|ref|ZP_19615355.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE11]
 gi|430896803|gb|ELC19030.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE11]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTEYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|366157968|ref|ZP_09457830.1| ATP-dependent RNA helicase HrpA [Escherichia sp. TW09308]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTEYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|209771188|gb|ACI83906.1| ATP-dependent helicase HrpA [Escherichia coli]
 gi|209771194|gb|ACI83909.1| ATP-dependent helicase HrpA [Escherichia coli]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|387611945|ref|YP_006115061.1| ATP-dependent helicase HrpA [Escherichia coli ETEC H10407]
 gi|309701681|emb|CBJ00988.1| ATP-dependent helicase HrpA [Escherichia coli ETEC H10407]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|218694954|ref|YP_002402621.1| ATP-dependent RNA helicase HrpA [Escherichia coli 55989]
 gi|260867860|ref|YP_003234262.1| ATP-dependent helicase HrpA [Escherichia coli O111:H- str. 11128]
 gi|407469114|ref|YP_006784444.1| ATP-dependent RNA helicase HrpA [Escherichia coli O104:H4 str.
           2009EL-2071]
 gi|407482223|ref|YP_006779372.1| ATP-dependent RNA helicase HrpA [Escherichia coli O104:H4 str.
           2011C-3493]
 gi|410482775|ref|YP_006770321.1| ATP-dependent RNA helicase HrpA [Escherichia coli O104:H4 str.
           2009EL-2050]
 gi|415821375|ref|ZP_11510342.1| ATP-dependent helicase HrpA [Escherichia coli OK1180]
 gi|415826974|ref|ZP_11513891.1| ATP-dependent helicase HrpA [Escherichia coli OK1357]
 gi|417580723|ref|ZP_12231531.1| ATP-dependent helicase HrpA [Escherichia coli STEC_B2F1]
 gi|417591432|ref|ZP_12242135.1| ATP-dependent helicase HrpA [Escherichia coli 2534-86]
 gi|417607717|ref|ZP_12258227.1| ATP-dependent helicase HrpA [Escherichia coli STEC_DG131-3]
 gi|417666836|ref|ZP_12316386.1| ATP-dependent helicase HrpA [Escherichia coli STEC_O31]
 gi|419896907|ref|ZP_14416536.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H8 str.
           CVM9574]
 gi|420089922|ref|ZP_14601701.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H8 str.
           CVM9602]
 gi|420095800|ref|ZP_14607279.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H8 str.
           CVM9634]
 gi|424770533|ref|ZP_18197728.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H8 str.
           CFSAN001632]
 gi|427804523|ref|ZP_18971590.1| helicase, ATP-dependent [Escherichia coli chi7122]
 gi|427809104|ref|ZP_18976169.1| helicase, ATP-dependent [Escherichia coli]
 gi|443617473|ref|YP_007381329.1| ATP-dependent RNA helicase HrpA [Escherichia coli APEC O78]
 gi|218351686|emb|CAU97401.1| ATP-dependent helicase [Escherichia coli 55989]
 gi|257764216|dbj|BAI35711.1| ATP-dependent helicase HrpA [Escherichia coli O111:H- str. 11128]
 gi|323178107|gb|EFZ63686.1| ATP-dependent helicase HrpA [Escherichia coli OK1180]
 gi|323185452|gb|EFZ70813.1| ATP-dependent helicase HrpA [Escherichia coli OK1357]
 gi|345340847|gb|EGW73264.1| ATP-dependent helicase HrpA [Escherichia coli STEC_B2F1]
 gi|345341577|gb|EGW73980.1| ATP-dependent helicase HrpA [Escherichia coli 2534-86]
 gi|345360812|gb|EGW92979.1| ATP-dependent helicase HrpA [Escherichia coli STEC_DG131-3]
 gi|388356554|gb|EIL21271.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H8 str.
           CVM9574]
 gi|394386853|gb|EJE64327.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H8 str.
           CVM9602]
 gi|394391670|gb|EJE68505.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H8 str.
           CVM9634]
 gi|397785598|gb|EJK96446.1| ATP-dependent helicase HrpA [Escherichia coli STEC_O31]
 gi|406777937|gb|AFS57361.1| ATP-dependent RNA helicase HrpA [Escherichia coli O104:H4 str.
           2009EL-2050]
 gi|407054520|gb|AFS74571.1| ATP-dependent RNA helicase HrpA [Escherichia coli O104:H4 str.
           2011C-3493]
 gi|407065149|gb|AFS86196.1| ATP-dependent RNA helicase HrpA [Escherichia coli O104:H4 str.
           2009EL-2071]
 gi|412962705|emb|CCK46621.1| helicase, ATP-dependent [Escherichia coli chi7122]
 gi|412969283|emb|CCJ43915.1| helicase, ATP-dependent [Escherichia coli]
 gi|421942065|gb|EKT99420.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H8 str.
           CFSAN001632]
 gi|443421981|gb|AGC86885.1| ATP-dependent RNA helicase HrpA [Escherichia coli APEC O78]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|115692161|ref|XP_792543.2| PREDICTED: putative ATP-dependent RNA helicase DHX33
           [Strongylocentrotus purpuratus]
          Length = 664

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 149/452 (32%), Positives = 262/452 (57%), Gaps = 26/452 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE----VKIILMSATINIEL 365
           E   D  LS Y ++VLDE HER +H D L GV+K      A     +KI++MSAT++++ 
Sbjct: 138 EAILDPKLSRYSIVVLDEAHERTVHTDVLFGVVKAAQQHRANGNRPLKIVVMSATMDVDS 197

Query: 366 FHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTER 425
           F  YFN+ A ++ + GR +PI+L Y    + D   S        +  +  I ++ P +E 
Sbjct: 198 FSQYFNK-APVLYLQGRQHPIELMYSSSSQPDYLFST-------LVTIFQIHQEQPVSE- 248

Query: 426 GDVLIFMSGISEISSIVRAAQEYN----EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR 481
            D+L+F++G  EI S+ R+ +E      +   G + +P++++L   +Q RVF  AP G R
Sbjct: 249 -DMLVFLTGQEEIESVARSVREVALDLPQNVPGLVAIPMYASLPPGQQLRVFQPAPSGKR 307

Query: 482 KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
           K I++TNIAETS+TI GI+ V+D+GKVK  SY   + +  L+  W+S+A A QR GR+GR
Sbjct: 308 KIILATNIAETSVTIPGIKHVIDTGKVKAKSYQAGSGLDLLRVQWVSQAQAWQRTGRSGR 367

Query: 542 TGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENI 601
              G C+R+Y+E++++ L   + PEI+R ++ +++L ++ +G+ +V  F F++ PP E++
Sbjct: 368 EDSGTCWRMYTEDEFTKLLANTIPEIQRCNLSNVVLQIMALGIKNVLTFDFMDPPPRESL 427

Query: 602 ESSVRSLTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
           E++++ L   GA+ S+ER   +T +G+ +S  P+D P+ K+++    +  ++ +L++ +V
Sbjct: 428 EAALKHLELLGAV-SRERNLHLTPIGKEMSTYPLDPPMSKVIISAKDYGCLEEILTIVSV 486

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGI 718
           LSV+S   +   +      A K+   + GD +T+L+ Y+ +  VK      K+WC+   I
Sbjct: 487 LSVESILHSPMSKRDKALAAWKKFYCSEGDHVTLLSVYRAFKAVKN----KKEWCRENYI 542

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
             +      ++R Q + +   + L     G D
Sbjct: 543 NHRNLKHAMEVRKQLRDLCVRANLTLQSCGHD 574



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 72/106 (67%), Gaps = 3/106 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLP+   + ++I  + K   V++ G+TG GK+TQIPQYL++AG  +   IA TQPRR+A 
Sbjct: 33  SLPIYPARGKLITEIRKAASVVVLGETGSGKTTQIPQYLLEAGMTKAGMIAVTQPRRVAA 92

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           IS+S RVA E   +    VGY +RF+    E+TKI ++T+G+LLR+
Sbjct: 93  ISISTRVADEMGCELGTQVGYCVRFDDATSEQTKIKYMTDGMLLRE 138



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 81/127 (63%), Gaps = 4/127 (3%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G C+R+Y+E++++ L   + PEI+R ++ +++L ++ +G+ +V  F F++ PP E+
Sbjct: 367 REDSGTCWRMYTEDEFTKLLANTIPEIQRCNLSNVVLQIMALGIKNVLTFDFMDPPPRES 426

Query: 869 IESSVRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
           +E++++ L   GA+ S+ER   +T +G+ +S  P+D P+ K+++    +  ++ +L +  
Sbjct: 427 LEAALKHLELLGAV-SRERNLHLTPIGKEMSTYPLDPPMSKVIISAKDYGCLEEILTIVS 485

Query: 926 ALNFGAI 932
            L+  +I
Sbjct: 486 VLSVESI 492



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE----VKIILMSATINIELFHTY 1174
            D  LS Y ++VLDE HER +H D L GV+K      A     +KI++MSAT++++ F  Y
Sbjct: 142  DPKLSRYSIVVLDEAHERTVHTDVLFGVVKAAQQHRANGNRPLKIVVMSATMDVDSFSQY 201

Query: 1175 FNRIAKDLLSG 1185
            FN+     L G
Sbjct: 202  FNKAPVLYLQG 212


>gi|417601966|ref|ZP_12252539.1| ATP-dependent helicase HrpA [Escherichia coli STEC_94C]
 gi|345351200|gb|EGW83463.1| ATP-dependent helicase HrpA [Escherichia coli STEC_94C]
          Length = 841

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTEHDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 383 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 442

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 443 IQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 502

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 503 TSALSIQ--DPRER 514



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|417723375|ref|ZP_12372188.1| ATP-dependent helicase HrpA [Shigella flexneri K-304]
 gi|417728079|ref|ZP_12376802.1| ATP-dependent helicase HrpA [Shigella flexneri K-671]
 gi|332760064|gb|EGJ90363.1| ATP-dependent helicase HrpA [Shigella flexneri K-671]
 gi|333017610|gb|EGK36922.1| ATP-dependent helicase HrpA [Shigella flexneri K-304]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|77748698|ref|NP_643431.2| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 1373

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 159/445 (35%), Positives = 249/445 (55%), Gaps = 34/445 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LSSYD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGP--------YIRILSIIDKKY 420
           +F+  A +I V GR +P+++ Y P+ E D    ++ + G            I++ ID+  
Sbjct: 240 HFDN-APVISVEGRTFPVEVRYRPL-EGDTGDCDEGEHGSGRDGERSVNDAIVAAIDEIT 297

Query: 421 PRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QD VF+  P 
Sbjct: 298 RIDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDHVFNPGPR 353

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
             R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR GR
Sbjct: 354 --RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMGR 411

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
            GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP  
Sbjct: 412 CGRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDE 471

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
             +    + L + GAID++ R+T+ GR ++ LPVD+ L +MLV       +  ++ +AA 
Sbjct: 472 RAVADGWQQLLELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAF 531

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDRVRSK- 710
           L +Q P      R P+   A     +   D        L + +AY++   V +D  +SK 
Sbjct: 532 LGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDLTQSKL 584

Query: 711 -KWCKRRGIEEQRFYEVTKLRSQFK 734
             WC R  +   R  E  +L  Q +
Sbjct: 585 RDWCNRHFLGFLRMREWRELHRQLR 609



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 413 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 472

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 473 AVADGWQQLLELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 530

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 531 FLGIQDPRER 540



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 48/63 (76%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LSSYD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           + LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  DQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +     VG+Q+RF     ++++I F+T+G+LL
Sbjct: 135 ARAVAARVADELKTPLGTTVGFQVRFTDRVSDQSRIKFMTDGILL 179



 Score = 47.8 bits (112), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 28/39 (71%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++A+D +LSSYD +I+DE HER L  DFLLG +   LH
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLH 218



 Score = 44.3 bits (103), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 482  LELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAAFLGIQDPRE 539

Query: 1037 R 1037
            R
Sbjct: 540  R 540



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M+++
Sbjct: 482  LELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 528


>gi|365107149|ref|ZP_09335562.1| ATP-dependent RNA helicase hrpA [Citrobacter freundii 4_7_47CFAA]
 gi|363642133|gb|EHL81508.1| ATP-dependent RNA helicase hrpA [Citrobacter freundii 4_7_47CFAA]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ CK   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCKVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|415771734|ref|ZP_11485506.1| ATP-dependent helicase HrpA [Escherichia coli 3431]
 gi|315619637|gb|EFV00161.1| ATP-dependent helicase HrpA [Escherichia coli 3431]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|30062885|ref|NP_837056.1| ATP-dependent RNA helicase HrpA [Shigella flexneri 2a str. 2457T]
 gi|56479964|ref|NP_707663.2| ATP-dependent RNA helicase HrpA [Shigella flexneri 2a str. 301]
 gi|415854201|ref|ZP_11530027.1| ATP-dependent helicase HrpA [Shigella flexneri 2a str. 2457T]
 gi|417701903|ref|ZP_12351027.1| ATP-dependent helicase HrpA [Shigella flexneri K-218]
 gi|417738403|ref|ZP_12386995.1| ATP-dependent helicase HrpA [Shigella flexneri 4343-70]
 gi|30041133|gb|AAP16863.1| helicase [Shigella flexneri 2a str. 2457T]
 gi|56383515|gb|AAN43370.2| helicase [Shigella flexneri 2a str. 301]
 gi|313650608|gb|EFS15011.1| ATP-dependent helicase HrpA [Shigella flexneri 2a str. 2457T]
 gi|332757711|gb|EGJ88042.1| ATP-dependent helicase HrpA [Shigella flexneri 4343-70]
 gi|333004810|gb|EGK24332.1| ATP-dependent helicase HrpA [Shigella flexneri K-218]
          Length = 1281

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|422022707|ref|ZP_16369214.1| ATP-dependent RNA helicase HrpA [Providencia sneebia DSM 19967]
 gi|414095877|gb|EKT57537.1| ATP-dependent RNA helicase HrpA [Providencia sneebia DSM 19967]
          Length = 1299

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 159/444 (35%), Positives = 241/444 (54%), Gaps = 22/444 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176 AELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLIKRPDLKVIITSATIDPERFSR 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRTERG 426
           +FN+ A II+V GR YP+++ Y PI+  D             +I  IID   +  +   G
Sbjct: 236 HFNQ-APIIEVSGRTYPVEVRYRPIIGADNDNDRD-------QIDGIIDAVNELGKESAG 287

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFMSG  EI     A  +   +     +LPL + LS  EQ+R+FH  P G R+ I+S
Sbjct: 288 DILIFMSGEREIRDTADALNKLQLRHTE--ILPLFARLSNSEQNRIFH--PHGGRRIILS 343

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D+G  +   Y    K+  L    IS+ASA QRKGR GR   GV
Sbjct: 344 TNVAETSLTVPGIKYVIDTGYARISRYSFRTKVQRLPVEPISQASANQRKGRCGRVSDGV 403

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V+
Sbjct: 404 CIRLYSEEDFLGRPEFTDPEILRTNLASVILQMTSIGLGDISAFPFVEAPDKRNIQDGVK 463

Query: 607 SLTQHGAI---DSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            L + GAI      ER   +T +GR L+ LPVD  L +M++       +   + + + LS
Sbjct: 464 LLEELGAIKPHKENERGYLLTDIGRQLAQLPVDPRLARMVIEAKKQGAVREAMVIVSALS 523

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKK--DRVRSKKWCKRRGI 718
           +Q P      +    +   +       D L  LN +      +K     + +K C++  +
Sbjct: 524 IQDPRERPLDKQQASDEKHRRFHDKQSDFLAFLNLWDYLKDQQKALSNAQFRKMCRQDFL 583

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL 742
              R  E   L +Q +QV+ + G+
Sbjct: 584 NYLRVREWQDLYTQLRQVVKEQGI 607



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 69/106 (65%), Gaps = 7/106 (6%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ-----AGFQRIACTQPRRI 91
           +LPV+Q KQ I D + + +VVIIAG+TG GK+TQIP+  ++      GF  I  TQPRR+
Sbjct: 72  NLPVSQKKQAIYDAIKQHQVVIIAGETGSGKTTQIPKICLELGRGIKGF--IGHTQPRRL 129

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           A  S++ R+A E  S+    VGY++RF     E T++  +T+G+LL
Sbjct: 130 AARSVAARLAQELESEIGTTVGYKVRFSDQVSENTRVKLMTDGILL 175



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 6/108 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 397 GRVSDGVCIRLYSEEDFLGRPEFTDPEILRTNLASVILQMTSIGLGDISAFPFVEAPDKR 456

Query: 868 NIESSVRSLTQHGAI---DSKER---VTTLGRFLSDLPVDIPLGKMLV 909
           NI+  V+ L + GAI      ER   +T +GR L+ LPVD  L +M++
Sbjct: 457 NIQDGVKLLEELGAIKPHKENERGYLLTDIGRQLAQLPVDPRLARMVI 504



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176  AELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLIKRPDLKVIITSATIDPERFSR 235

Query: 1174 YFNRIAKDLLSGST 1187
            +FN+     +SG T
Sbjct: 236  HFNQAPIIEVSGRT 249


>gi|422334447|ref|ZP_16415453.1| ATP-dependent RNA helicase hrpA [Escherichia coli 4_1_47FAA]
 gi|432770340|ref|ZP_20004684.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE50]
 gi|432961339|ref|ZP_20151177.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE202]
 gi|433062662|ref|ZP_20249607.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE125]
 gi|373244571|gb|EHP64053.1| ATP-dependent RNA helicase hrpA [Escherichia coli 4_1_47FAA]
 gi|431315540|gb|ELG03439.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE50]
 gi|431476341|gb|ELH56133.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE202]
 gi|431584564|gb|ELI56541.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE125]
          Length = 1300

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPIDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|326442353|ref|ZP_08217087.1| ATP-dependent helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 1310

 Score =  259 bits (663), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 157/454 (34%), Positives = 250/454 (55%), Gaps = 16/454 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            EV  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 177 AEVQTDRELHAYDTIIIDEAHERSLNIDFLLGYLARLLPKRPDLKVVITSATIDPERFSR 236

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A I++V GR YP+++ Y P++E D       D      I   +++      +GD+
Sbjct: 237 HFGD-APIVEVSGRTYPVEVRYRPLLEEDDPDGPDSDRDQITAICEAVEELQAEG-KGDI 294

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWI-VLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           L+F+SG  EI      A   N+++  +  VLPL++ LS  EQ RVF   P   R+ +++T
Sbjct: 295 LVFLSGEREIRD---TADALNKRAYRFTEVLPLYARLSHAEQHRVFQ--PHTGRRIVLAT 349

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GIR+V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 350 NVAETSLTVPGIRYVIDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGIC 409

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++  EI R ++ S++L +   GLGD+ KFPF++ P   NI   V+ 
Sbjct: 410 IRLYSEDDFEARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQL 469

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GA      D ++++T LGR L+ LPVD  L +M++       +  V+ +AA LS+Q
Sbjct: 470 LQELGAFDPVQKDPRKKLTPLGRKLAQLPVDPRLARMVIEAEKNGCVREVMVIAAALSIQ 529

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEE 720
            P    A +    +      +    D L  LN ++     +++R  +  ++ CK+  +  
Sbjct: 530 DPRERPADKQTQADQQHARFKDETSDFLAFLNLWRYIREQQRERGSASFRRMCKQEYLNY 589

Query: 721 QRFYEVTKLRSQFKQVLGDSGL-ITDIPGPDASL 753
            R  E   + +Q +QV    G+ +T+  GP+A +
Sbjct: 590 LRIREWQDIYAQLRQVAKSLGIQVTEADGPEAGI 623



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSE+ +    E++  EI R ++ S++L +   GLGD+ KFPF++ P   
Sbjct: 402 GRTSDGICIRLYSEDDFEARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHR 461

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI   V+ L + GA      D ++++T LGR L+ LPVD  L +M++       +  +++
Sbjct: 462 NIRDGVQLLQELGAFDPVQKDPRKKLTPLGRKLAQLPVDPRLARMVIEAEKNGCVREVMV 521

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 522 IAAALSIQ--DPRER 534



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 69/105 (65%), Gaps = 4/105 (3%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
            LPV+Q K EI++ +   +VVI+AG+TG GK+TQIP+  ++ G      I  TQPRRIA 
Sbjct: 72  QLPVSQKKDEILEAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVRGMIGHTQPRRIAA 131

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLL 137
            ++++RVA E  +     VG+++RF ++  ++ T I  +T+G+LL
Sbjct: 132 RTVAERVADELDTPLGEAVGWKVRFTDQVNQDSTFIKLMTDGILL 176



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +V  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 177  AEVQTDRELHAYDTIIIDEAHERSLNIDFLLGYLARLLPKRPDLKVVITSATIDPERFSR 236

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 237  HFGDAPIVEVSGRT 250


>gi|237731636|ref|ZP_04562117.1| ATP-dependent helicase HrpA [Citrobacter sp. 30_2]
 gi|226907175|gb|EEH93093.1| ATP-dependent helicase HrpA [Citrobacter sp. 30_2]
          Length = 1300

 Score =  259 bits (663), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ CK   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCKLDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|213403584|ref|XP_002172564.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2
           [Schizosaccharomyces japonicus yFS275]
 gi|212000611|gb|EEB06271.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2
           [Schizosaccharomyces japonicus yFS275]
          Length = 1023

 Score =  259 bits (663), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 153/420 (36%), Positives = 241/420 (57%), Gaps = 28/420 (6%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L SY V+++DE HER LH D L G++K +     ++K+++ SATI+ E F TYF+  A I
Sbjct: 499 LESYSVIIIDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATIDAEKFSTYFDN-API 557

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRI-LSIIDKKYPRTERGDVLIFMSGI 435
             VPGR YP+ + Y P  E +           YI+  ++ + + +   E GD+L+F++G 
Sbjct: 558 YNVPGRRYPVSIYYTPQPEAN-----------YIQAAITTVLQIHTTQESGDILVFLTGQ 606

Query: 436 SEISSIVRAAQEY----NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAE 491
            EI  +    QE      +K +  I+ P+++ L  E Q ++F   P G RK +++TNIAE
Sbjct: 607 DEIELMSENLQELCRVLGKKIKEMIICPIYANLPSELQSKIFEPTPPGARKVVLATNIAE 666

Query: 492 TSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLY 551
           TSITIDG+ FV+D G VKE  Y+    M +L     S+ASA+QR GRAGR GPG C+RLY
Sbjct: 667 TSITIDGVSFVIDPGFVKEDVYNPRTGMQSLVTVPCSRASADQRAGRAGRVGPGKCFRLY 726

Query: 552 SEEQYSLLAEYST-PEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQ 610
           +   Y+   E ST PEI+R ++ S++L L  +G+ ++ +F F++APP E +  S+  L  
Sbjct: 727 TRWTYNNELEASTSPEIQRTNLTSIVLLLKSLGINNLLEFDFMDAPPPETLMRSLELLYA 786

Query: 611 HGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAF 670
            GA++SK  +T LGR +++ P D  L K L+  SM+  ++ VLS+ A+L   S    R  
Sbjct: 787 LGALNSKGELTKLGRQIAEFPADPMLSKSLIAASMYGCVEEVLSVVAMLGESSSLFYRP- 845

Query: 671 RDP--DCETARKELESNHGDPLTVLNAYKEWLGV-------KKDRVRSKKWCKRRGIEEQ 721
           RD   + +  R       GD  T+L+ + EW+         +++ ++ +  C+ R + +Q
Sbjct: 846 RDKVMEADKCRANFTQPLGDHFTLLHIWNEWVDTDFSYSWARENFLQYRSLCRARDVRDQ 905



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 80/113 (70%), Gaps = 4/113 (3%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACT 86
           ++ET+ SLP+ Q++  ++  + + +V+I+  +TG GK+TQ+PQYL +AG+    ++I CT
Sbjct: 380 LQETRKSLPIYQHRDGLLQAIEEYQVLIVVAETGSGKTTQLPQYLHEAGYTNGGKKICCT 439

Query: 87  QPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           QPRR+A +S++ RVA E   +    VGY IRFE +  EKT I ++T+G+LLR+
Sbjct: 440 QPRRVAAMSVAARVAKEMNVRLGQEVGYTIRFENNTSEKTCIKYLTDGMLLRE 492



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 72/114 (63%), Gaps = 1/114 (0%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYST-PEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           R GPG C+RLY+   Y+   E ST PEI+R ++ S++L L  +G+ ++ +F F++APP E
Sbjct: 716 RVGPGKCFRLYTRWTYNNELEASTSPEIQRTNLTSIVLLLKSLGINNLLEFDFMDAPPPE 775

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
            +  S+  L   GA++SK  +T LGR +++ P D  L K L+  SM+  ++ +L
Sbjct: 776 TLMRSLELLYALGALNSKGELTKLGRQIAEFPADPMLSKSLIAASMYGCVEEVL 829



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 38/55 (69%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            L SY V+++DE HER LH D L G++K +     ++K+++ SATI+ E F TYF+
Sbjct: 499  LESYSVIIIDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATIDAEKFSTYFD 553


>gi|343510252|ref|ZP_08747504.1| ATP-dependent RNA helicase HrpA [Vibrio scophthalmi LMG 19158]
 gi|342802965|gb|EGU38351.1| ATP-dependent RNA helicase HrpA [Vibrio scophthalmi LMG 19158]
          Length = 1309

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 145/393 (36%), Positives = 230/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++KII+ SATI+ E F  
Sbjct: 192 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKIIITSATIDPERFSK 251

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A II+V GR YP+   Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 252 HFSN-APIIEVSGRTYPVDTRYRPLSGYDDVDRDQLE-GIFEAVDELCDEGL-----GDI 304

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N K  G  ++PL++ LS  EQ+R+F   P   R+ +++TN
Sbjct: 305 LIFMNGEREIRDTADALSKRNLK--GTEIVPLYARLSASEQNRIFQ--PHAGRRIVLATN 360

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 361 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 420

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N++  VR L
Sbjct: 421 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNVQDGVRLL 480

Query: 609 TQHGAID-----SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GA++     +K+R+T+ GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 481 EELGALNGDVKEAKKRLTNTGRQLARLPIDPRLARMVLEAPKYGALKEVMIVAAALSIQD 540

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT +N +
Sbjct: 541 PRERPSDKKQSSDDKHRRFFHEDSDFLTFVNLW 573



 Score = 97.1 bits (240), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRVEEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAID-----SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           N++  VR L + GA++     +K+R+T  GR L+ LP+D  L +M++    +  +  +++
Sbjct: 472 NVQDGVRLLEELGALNGDVKEAKKRLTNTGRQLARLPIDPRLARMVLEAPKYGALKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 VAAALSIQ--DPRER 544



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 89  LPVSQKKDDIAKAIAEHQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 148

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  +Q    VGY++RF     E T+I  +T+G+LL
Sbjct: 149 SVANRIAEEMQTQLGEFVGYKVRFNDQISENTQIKLMTDGILL 191



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++KII+ SATI+ E F  
Sbjct: 192  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKIIITSATIDPERFSK 251

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 252  HFSNAPIIEVSGRT 265



 Score = 40.0 bits (92), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 192 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 225


>gi|332290247|ref|YP_004421099.1| ATP-dependent RNA helicase HrpA [Gallibacterium anatis UMN179]
 gi|330433143|gb|AEC18202.1| ATP-dependent RNA helicase HrpA [Gallibacterium anatis UMN179]
          Length = 1314

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 167/493 (33%), Positives = 263/493 (53%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+ +D +L+ Y+VL++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 197 AEIQSDRYLNQYEVLIIDEAHERSLNNDFILGYLKQLLPRRPDLKVIITSATIDVERFAK 256

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y PI E +       D      I   +D+      RGD+
Sbjct: 257 HFNN-APIIEVSGRTYPVEVRYRPIAESE-------DQDQLQAIFDAVDELQAEG-RGDI 307

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A ++   +     +LPL++ LS +EQ+R+FH  P  L + I++TN
Sbjct: 308 LIFMNGEREIRDTAEALEKRELRHTE--ILPLYARLSAQEQNRIFH--PGALNRIILATN 363

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 364 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 423

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   +++ PEI R ++ S++L +  +GL D+  FPF++AP    I+  +R L
Sbjct: 424 RLYSEEDFNSRPQFTDPEILRTNLASVILQMTALGLDDIESFPFVDAPDRRQIQDGLRLL 483

Query: 609 -------TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
                  T  G    K  +T  GR L+ LPVD  L KM++  +    +  VL + A LS+
Sbjct: 484 DELQAFKTVKGRYGDKRVLTESGRQLARLPVDPRLAKMVLMAASNGSLREVLVIVAALSI 543

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +     H D L  +N ++     +K   R+  ++ C++  + 
Sbjct: 544 QDPRERPLDKQQSADDKHRRFADKHSDFLAFVNLWRYIQEQQKQLSRNQFRRLCQKDYLN 603

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E  ++  Q +  + + GL  +     A       AL  G   LL  I  K+AE  
Sbjct: 604 YLRIREWQEIYHQLRLSVREMGLAINTEA--AEYMPIHTALLAG---LLSHIGSKEAE-- 656

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 657 --KQQYLGARNAH 667



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 68/103 (66%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LPV+Q  +EI+  +   +VV+IAG+TG GK+TQIP+  +  G  +   I  TQPRRIA  
Sbjct: 94  LPVSQRSEEIMRAIATHQVVVIAGETGSGKTTQIPKMCLALGLGKKGFIGHTQPRRIAAR 153

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++  ++VGY++RF     E T+I  +T+G+LL
Sbjct: 154 SVATRIAEELQTELGDIVGYKVRFNDQVSENTQIKLMTDGILL 196



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   +++ PEI R ++ S++L +  +GL D+  FPF++AP    
Sbjct: 416 RVSEGICIRLYSEEDFNSRPQFTDPEILRTNLASVILQMTALGLDDIESFPFVDAPDRRQ 475

Query: 869 IESSVRSL-------TQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  +R L       T  G    K  +T  GR L+ LPVD  L KM++  +    +  +L
Sbjct: 476 IQDGLRLLDELQAFKTVKGRYGDKRVLTESGRQLARLPVDPRLAKMVLMAASNGSLREVL 535

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 536 VIVAALSIQ--DPRER 549



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 50/74 (67%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++ +D +L+ Y+VL++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 197  AEIQSDRYLNQYEVLIIDEAHERSLNNDFILGYLKQLLPRRPDLKVIITSATIDVERFAK 256

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 257  HFNNAPIIEVSGRT 270



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 25/34 (73%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++ +D +L+ Y++LI+DE HER L  DF+LG +
Sbjct: 197 AEIQSDRYLNQYEVLIIDEAHERSLNNDFILGYL 230


>gi|21232376|ref|NP_638293.1| ATP dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767492|ref|YP_242254.1| ATP dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114152|gb|AAM42217.1| ATP dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572824|gb|AAY48234.1| ATP dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 1371

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 248/446 (55%), Gaps = 38/446 (8%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR---------ILSIIDKK 419
           +F+  A +I V GR +P+ + Y P+      +S   D G   R         I++ ID+ 
Sbjct: 240 HFDD-APVINVEGRTFPVDVRYRPL----EGESGDGDTGDVGRDGERTVNDAIVAAIDEI 294

Query: 420 YPRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAP 477
                RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QDRVF+  P
Sbjct: 295 TRIDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDRVFNPGP 350

Query: 478 EGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKG 537
              R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR G
Sbjct: 351 R--RRLVLATNVAETSLTVPRIRYVVDPGYARVKRYSPRQKLDRLHIEPISQASANQRMG 408

Query: 538 RAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 597
           R GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG + +FPFLEAP 
Sbjct: 409 RCGRIAEGICYRLYAEADFAARPAFTDPEIRRASLSGVILRMLQLGLGRIEEFPFLEAPD 468

Query: 598 AENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAA 657
              +    + L + GAID++ R+T++GR ++ LPVD+ L +MLV       +  ++ +AA
Sbjct: 469 ERAVADGWQQLLELGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAA 528

Query: 658 VLSVQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDRVRSK 710
            L +Q P      R P+   A     +   D        L + +AY++   V +D  +SK
Sbjct: 529 FLGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDLTQSK 581

Query: 711 --KWCKRRGIEEQRFYEVTKLRSQFK 734
              WC R  +   R  E  +L  Q +
Sbjct: 582 LRDWCGRHFLGFLRMREWRELHRQLR 607



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 78/130 (60%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG + +FPFLEAP   
Sbjct: 411 GRIAEGICYRLYAEADFAARPAFTDPEIRRASLSGVILRMLQLGLGRIEEFPFLEAPDER 470

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T +GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 471 AVADGWQQLLELGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 528

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 529 FLGIQDPRER 538



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
             LP+A+    II  +    VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  TQLPIAREADRIIALIRDHPVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +     VG+Q+RF     E ++I F+T+G+LL
Sbjct: 135 ARAVAARVAEELNTPLGTTVGFQVRFTDRVGEDSRIKFMTDGILL 179



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFSR 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 44.7 bits (104), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T++GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 480  LELGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAAFLGIQDPRE 537

Query: 1037 R 1037
            R
Sbjct: 538  R 538



 Score = 44.7 bits (104), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LS+YD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYL 213



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEE- 1085
            L  GAID++ R+T++GR ++ LPVD+ L +MLV       +  M+++   L      E  
Sbjct: 480  LELGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAFLGIQDPRERP 539

Query: 1086 EEEEEAGERLESMDAN 1101
             E  EA +   ++ A+
Sbjct: 540  PEAREAADNAHALFAD 555


>gi|422786014|ref|ZP_16838753.1| ATP-dependent helicase HrpA [Escherichia coli H489]
 gi|323962391|gb|EGB57976.1| ATP-dependent helicase HrpA [Escherichia coli H489]
          Length = 1300

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRYTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|419875383|ref|ZP_14397241.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H11 str.
           CVM9534]
 gi|388349066|gb|EIL14615.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H11 str.
           CVM9534]
          Length = 982

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRIDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 461

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 462 IQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 521

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 522 TSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|21109448|gb|AAM37967.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 1351

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 159/445 (35%), Positives = 249/445 (55%), Gaps = 34/445 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LSSYD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 158 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 217

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGP--------YIRILSIIDKKY 420
           +F+  A +I V GR +P+++ Y P+ E D    ++ + G            I++ ID+  
Sbjct: 218 HFDN-APVISVEGRTFPVEVRYRPL-EGDTGDCDEGEHGSGRDGERSVNDAIVAAIDEIT 275

Query: 421 PRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QD VF+  P 
Sbjct: 276 RIDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDHVFNPGPR 331

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
             R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR GR
Sbjct: 332 --RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMGR 389

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
            GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP  
Sbjct: 390 CGRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDE 449

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
             +    + L + GAID++ R+T+ GR ++ LPVD+ L +MLV       +  ++ +AA 
Sbjct: 450 RAVADGWQQLLELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAF 509

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDRVRSK- 710
           L +Q P      R P+   A     +   D        L + +AY++   V +D  +SK 
Sbjct: 510 LGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDLTQSKL 562

Query: 711 -KWCKRRGIEEQRFYEVTKLRSQFK 734
             WC R  +   R  E  +L  Q +
Sbjct: 563 RDWCNRHFLGFLRMREWRELHRQLR 587



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 391 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 450

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 451 AVADGWQQLLELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 508

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 509 FLGIQDPRER 518



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 48/63 (76%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LSSYD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 158  AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 217

Query: 1174 YFN 1176
            +F+
Sbjct: 218  HFD 220



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           + LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 53  DQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 112

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +     VG+Q+RF     ++++I F+T+G+LL
Sbjct: 113 ARAVAARVADELKTPLGTTVGFQVRFTDRVSDQSRIKFMTDGILL 157



 Score = 47.8 bits (112), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 28/39 (71%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++A+D +LSSYD +I+DE HER L  DFLLG +   LH
Sbjct: 158 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLH 196



 Score = 44.3 bits (103), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 460  LELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAAFLGIQDPRE 517

Query: 1037 R 1037
            R
Sbjct: 518  R 518



 Score = 41.6 bits (96), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M+++
Sbjct: 460  LELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 506


>gi|392978992|ref|YP_006477580.1| ATP-dependent RNA helicase HrpA [Enterobacter cloacae subsp.
           dissolvens SDM]
 gi|392324925|gb|AFM59878.1| ATP-dependent RNA helicase HrpA [Enterobacter cloacae subsp.
           dissolvens SDM]
          Length = 1281

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+       GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGNESAGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     +LPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALSKRDLRHTE--ILPLYARLSNSEQNRVFQ--PHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQEILNAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQTEAGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|419136159|ref|ZP_13680960.1| ATP-dependent helicase HrpA [Escherichia coli DEC5E]
 gi|377985347|gb|EHV48559.1| ATP-dependent helicase HrpA [Escherichia coli DEC5E]
          Length = 1300

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLIQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 75/115 (65%), Gaps = 6/115 (5%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL---RQDSGLI 144
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL   +QD  LI
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLI 189



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLIQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|357405336|ref|YP_004917260.1| ATP-dependent RNA helicase hrpA [Methylomicrobium alcaliphilum 20Z]
 gi|351718001|emb|CCE23666.1| ATP-dependent RNA helicase hrpA [Methylomicrobium alcaliphilum 20Z]
          Length = 1295

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 153/431 (35%), Positives = 244/431 (56%), Gaps = 10/431 (2%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D +L+ YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 178 AETQNDPYLNQYDTIIIDEAHERSLNIDFLLGYMKWLLPKRPDLKLIVTSATIDPERFSK 237

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A II+V GR YP+++ Y PI +++       D    + IL  +D+   R  RGD+
Sbjct: 238 HFAD-APIIEVSGRTYPVEIRYRPIEQIEEGDETTADL--QMAILDAVDE-LARDMRGDI 293

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIF+SG  EI     + ++++    G+ +LPL+S LS+ EQ+RVF   P+G ++ +++TN
Sbjct: 294 LIFLSGEREIRETTESLRKHH--PTGYEILPLYSKLSVAEQERVF--KPKGGQRIVLATN 349

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GIR V+D+G  +   Y   +K+  L    IS+ASA QR GR GR   G+C 
Sbjct: 350 VAETSLTVPGIRCVIDTGHARISRYSHRSKIQRLPIERISQASANQRAGRCGRVAEGICI 409

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYS+E + +   ++ PEI R ++ S++L ++ + LGD+  FPF+E P  + I      L
Sbjct: 410 RLYSKEDFQVRPVFTEPEILRTNLSSVILQMIALNLGDIEDFPFIEPPEDKMIRDGKTML 469

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            +  A+D +  +T +G+ L+ LP D  L +ML+  + +  +  V  + A LS+Q P    
Sbjct: 470 HEVNALDKQGNLTEIGKQLAKLPTDPKLARMLLAAADYQCLHEVSIIVAALSIQDPREKP 529

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRFYEV 726
           A +    +           D LT+LN +  +   KK    +K  K+CK + I   R  E 
Sbjct: 530 ADKMQQADAKHAVFRHEESDFLTLLNLWNHFEEQKKHLSNNKLRKYCKDQFISYVRMKEW 589

Query: 727 TKLRSQFKQVL 737
             + +Q  QV+
Sbjct: 590 FDIHAQIMQVI 600



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 69/121 (57%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYS+E + +   ++ PEI R ++ S++L ++ + LGD+  FPF+E P  +
Sbjct: 401 GRVAEGICIRLYSKEDFQVRPVFTEPEILRTNLSSVILQMIALNLGDIEDFPFIEPPEDK 460

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I      L +  A+D +  +T +G+ L+ LP D  L +ML+  + +  +  + ++  AL
Sbjct: 461 MIRDGKTMLHEVNALDKQGNLTEIGKQLAKLPTDPKLARMLLAAADYQCLHEVSIIVAAL 520

Query: 928 N 928
           +
Sbjct: 521 S 521



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 7/105 (6%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV-----QAGFQRIACTQPRRIA 92
           LPV+  K EI   +   +VVI+ G+TG GK+TQ+P+  +      AG+  I  TQPRRIA
Sbjct: 75  LPVSGKKDEIAQLIQDHQVVIVCGETGSGKTTQLPKICLAIGRGSAGY--IGHTQPRRIA 132

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E        VGY++RF    R+++ +  +T+G+LL
Sbjct: 133 ARTVADRIAEELGEPVGKSVGYKVRFHDQTRKESLVKLMTDGILL 177



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D +L+ YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 178  AETQNDPYLNQYDTIIIDEAHERSLNIDFLLGYMKWLLPKRPDLKLIVTSATIDPERFSK 237

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 238  HFADAPIIEVSGRT 251


>gi|411008026|ref|ZP_11384355.1| ATP-dependent helicase HrpA [Streptomyces globisporus C-1027]
          Length = 1310

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 162/452 (35%), Positives = 245/452 (54%), Gaps = 16/452 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 177 AEIQTDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPRRPDLKVVITSATIDPERFAR 236

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A I++V GR YP+++ Y P++E D   SE  D      I   +D+       GDV
Sbjct: 237 HFGD-APIVEVSGRTYPVEVRYRPLLEED---SEDSDRDQITAICDAVDE-LGHEAPGDV 291

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG  EI     A  + N +     VLPL++ LS  EQ RVF       R+ +++TN
Sbjct: 292 LVFLSGEREIRDTADALNKRNLRHTE--VLPLYARLSHAEQHRVFQR--HTGRRIVLATN 347

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C 
Sbjct: 348 VAETSLTVPGIKYVIDPGNARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGICI 407

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ +    E++ PEI R ++ S++L +   GLGD+ KFPF++ P   NI   V+ L
Sbjct: 408 RLYSEDDFVTRPEFTDPEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLL 467

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GA+     D K+R+T LGR LS LPVD  L +M++          V+ +AA LS+Q 
Sbjct: 468 QELGALDPAEKDPKKRLTPLGRKLSQLPVDPRLARMVIEADKNGCAREVMVIAAALSIQD 527

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQ 721
           P    A +    +      +    D L  LN +      +K+R  S  ++ CK+  +   
Sbjct: 528 PRERPAEKQTQADQNHARFKDETSDFLAFLNLWAYVREQQKERGSSSFRRMCKQEYLNFL 587

Query: 722 RFYEVTKLRSQFKQVLGDSGLITDIPGPDASL 753
           R  E   + +Q + V    G+  + P  +AS+
Sbjct: 588 RIREWQDIYAQLRTVAKQMGITVEEPKAEASI 619



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 67/107 (62%), Gaps = 5/107 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSE+ +    E++ PEI R ++ S++L +   GLGD+ KFPF++ P   
Sbjct: 399 GRTSDGICIRLYSEDDFVTRPEFTDPEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHR 458

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLV 909
           NI   V+ L + GA+     D K+R+T LGR LS LPVD  L +M++
Sbjct: 459 NIRDGVQLLQELGALDPAEKDPKKRLTPLGRKLSQLPVDPRLARMVI 505



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 68/104 (65%), Gaps = 4/104 (3%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K EI++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRRIA  
Sbjct: 73  LPVSQKKDEILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGVRGMIGHTQPRRIAAR 132

Query: 95  SLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLL 137
           ++++RVA E  +     VG+++RF ++   E T +  +T+G+LL
Sbjct: 133 TVAERVADELKTPLGETVGWKVRFTDQVNPESTYLKLMTDGILL 176



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 177  AEIQTDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPRRPDLKVVITSATIDPERFAR 236

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 237  HFGDAPIVEVSGRT 250


>gi|219871768|ref|YP_002476143.1| ATP-dependent RNA helicase HrpA [Haemophilus parasuis SH0165]
 gi|219691972|gb|ACL33195.1| ATP-dependent RNA helicase HrpA [Haemophilus parasuis SH0165]
          Length = 1312

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 248/449 (55%), Gaps = 28/449 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +L    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILAKRPDLKVIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y PIVE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEED-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+   +     +LPL++ LS  EQ R+F+  P  L + I++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQELRHTE--ILPLYARLSAAEQQRIFN--PSNLNRIILATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRISEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   +++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  +R L
Sbjct: 413 RLYSEEDFNARPQFTDPEILRTNLASVILQMAALGLTDIASFPFVDAPDQRHIQDGIRLL 472

Query: 609 TQHGAID-------------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
            + GA+              S +++T++GR L+ LP+D  LG+M++  +    +  V+ +
Sbjct: 473 EELGALGRDTLRMSADARSASLQKLTNIGRQLAQLPIDPRLGRMVIEAAKNGSLHEVMMI 532

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWC 713
            + LS+Q P      +    +   +       D L  +N +      +K+  ++  +K C
Sbjct: 533 VSALSIQDPRERPQEKQQSSDDKHRRFADKESDFLAFVNLWHFIQEQQKELTKNQFRKLC 592

Query: 714 KRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
           ++  +   R  E   +  Q +  + + GL
Sbjct: 593 QKDYLNYLRVREWQDIYHQLRLAVREMGL 621



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 81/142 (57%), Gaps = 15/142 (10%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   +++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RISEGICIRLYSEEDFNARPQFTDPEILRTNLASVILQMAALGLTDIASFPFVDAPDQRH 464

Query: 869 IESSVRSLTQHGAID-------------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFH 915
           I+  +R L + GA+              S +++T +GR L+ LP+D  LG+M++  +   
Sbjct: 465 IQDGIRLLEELGALGRDTLRMSADARSASLQKLTNIGRQLAQLPIDPRLGRMVIEAAKNG 524

Query: 916 QIDTMLLLDLALNFGAIDSKER 937
            +  ++++  AL+    D +ER
Sbjct: 525 SLHEVMMIVSALSIQ--DPRER 544



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACI 94
           LPV+  + EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRRIA  
Sbjct: 83  LPVSARRDEILKLIAEHQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRIAAR 142

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  S+  + +GY++RF     + T +  +T+G+LL
Sbjct: 143 SVATRIAEELKSELGSTIGYKVRFNDQMSDNTLVKLMTDGILL 185



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +L    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILAKRPDLKVIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D +L+ YD LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYL 219


>gi|254389967|ref|ZP_05005189.1| ATP-dependent helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294813941|ref|ZP_06772584.1| Putative ATP-dependent helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|197703676|gb|EDY49488.1| ATP-dependent helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294326540|gb|EFG08183.1| Putative ATP-dependent helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 1325

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 157/454 (34%), Positives = 250/454 (55%), Gaps = 16/454 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            EV  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 192 AEVQTDRELHAYDTIIIDEAHERSLNIDFLLGYLARLLPKRPDLKVVITSATIDPERFSR 251

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A I++V GR YP+++ Y P++E D       D      I   +++      +GD+
Sbjct: 252 HFGD-APIVEVSGRTYPVEVRYRPLLEEDDPDGPDSDRDQITAICEAVEELQAEG-KGDI 309

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWI-VLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           L+F+SG  EI      A   N+++  +  VLPL++ LS  EQ RVF   P   R+ +++T
Sbjct: 310 LVFLSGEREIRD---TADALNKRAYRFTEVLPLYARLSHAEQHRVFQ--PHTGRRIVLAT 364

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GIR+V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 365 NVAETSLTVPGIRYVIDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGIC 424

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++  EI R ++ S++L +   GLGD+ KFPF++ P   NI   V+ 
Sbjct: 425 IRLYSEDDFEARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQL 484

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GA      D ++++T LGR L+ LPVD  L +M++       +  V+ +AA LS+Q
Sbjct: 485 LQELGAFDPVQKDPRKKLTPLGRKLAQLPVDPRLARMVIEAEKNGCVREVMVIAAALSIQ 544

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEE 720
            P    A +    +      +    D L  LN ++     +++R  +  ++ CK+  +  
Sbjct: 545 DPRERPADKQTQADQQHARFKDETSDFLAFLNLWRYIREQQRERGSASFRRMCKQEYLNY 604

Query: 721 QRFYEVTKLRSQFKQVLGDSGL-ITDIPGPDASL 753
            R  E   + +Q +QV    G+ +T+  GP+A +
Sbjct: 605 LRIREWQDIYAQLRQVAKSLGIQVTEADGPEAGI 638



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSE+ +    E++  EI R ++ S++L +   GLGD+ KFPF++ P   
Sbjct: 417 GRTSDGICIRLYSEDDFEARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHR 476

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI   V+ L + GA      D ++++T LGR L+ LPVD  L +M++       +  +++
Sbjct: 477 NIRDGVQLLQELGAFDPVQKDPRKKLTPLGRKLAQLPVDPRLARMVIEAEKNGCVREVMV 536

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 537 IAAALSIQ--DPRER 549



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 69/105 (65%), Gaps = 4/105 (3%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
            LPV+Q K EI++ +   +VVI+AG+TG GK+TQIP+  ++ G      I  TQPRRIA 
Sbjct: 87  QLPVSQKKDEILEAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVRGMIGHTQPRRIAA 146

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLL 137
            ++++RVA E  +     VG+++RF ++  ++ T I  +T+G+LL
Sbjct: 147 RTVAERVADELDTPLGEAVGWKVRFTDQVNQDSTFIKLMTDGILL 191



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +V  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 192  AEVQTDRELHAYDTIIIDEAHERSLNIDFLLGYLARLLPKRPDLKVVITSATIDPERFSR 251

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 252  HFGDAPIVEVSGRT 265


>gi|426383744|ref|XP_004058437.1| PREDICTED: putative ATP-dependent RNA helicase DHX33 isoform 1
           [Gorilla gorilla gorilla]
          Length = 707

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 178 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 237

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 238 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 285

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 286 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 343

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 344 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 403

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 404 GRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 463

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 464 SPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 523

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 524 TIVSLLSVDSVLHNPPSRREEVQGVRKKFISSEGDHMTLLNIYRTFRNLGGNKD------ 577

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WCK   +  +    V ++R+Q + +
Sbjct: 578 WCKENFVNSKNMMLVAEVRAQLRDI 602



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 71  RRSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 130

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RF+    E T+I F+T+G+LLR+
Sbjct: 131 AAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLRE 178



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 408 REDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 467

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 468 IQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 525



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 181  SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFS 240

Query: 1173 TYFN 1176
             YFN
Sbjct: 241  QYFN 244


>gi|451964894|ref|ZP_21918156.1| ATP-dependent RNA helicase HrpA [Edwardsiella tarda NBRC 105688]
 gi|451316471|dbj|GAC63518.1| ATP-dependent RNA helicase HrpA [Edwardsiella tarda NBRC 105688]
          Length = 1307

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 248/445 (55%), Gaps = 28/445 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 189 AEIQQDRMLMQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPQRFSR 248

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN+ A II+V GR YP+++ Y PI + D    E+      I  +  +  + P    GD+
Sbjct: 249 HFNQ-APIIEVSGRTYPVEVRYRPIADGD---GERDQTQAIIDAVDELGHEAP----GDI 300

Query: 429 LIFMSGISEI----SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           LIFMSG  EI     ++ R A  + E      VLPL++ LS  EQ+RVFH      R+ +
Sbjct: 301 LIFMSGEREIRDTADALTRLALPHTE------VLPLYARLSAAEQNRVFH--SHSGRRIV 352

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   
Sbjct: 353 LATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSD 412

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G+C RLY E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  
Sbjct: 413 GICIRLYDEQDFLSRPAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDG 472

Query: 605 VRSLTQHGAIDSKER----VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           VR L + GA+   +R    +T+LGR L+ LP+D  L +M++ G     +  V+ +AA LS
Sbjct: 473 VRLLEELGAVTLNQRGHQQLTALGRQLAQLPIDPRLARMVIEGERNGALREVMVIAAGLS 532

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P    A R    +   +  +    D L ++N + ++L  ++  + S   ++ CK   
Sbjct: 533 IQDPRERPADRPQAADEKHRRFQDKESDFLALVNLW-DYLREQQQALSSNQLRRLCKSEF 591

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+   G 
Sbjct: 592 LNYLRVREWQDIYTQLRQVVKSLGF 616



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLY E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 408 GRVSDGICIRLYDEQDFLSRPAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 467

Query: 868 NIESSVRSLTQHGAIDSKER----VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI+  VR L + GA+   +R    +T LGR L+ LP+D  L +M++ G     +  ++++
Sbjct: 468 NIQDGVRLLEELGAVTLNQRGHQQLTALGRQLAQLPIDPRLARMVIEGERNGALREVMVI 527

Query: 924 DLALNFGAIDSKER 937
              L+    D +ER
Sbjct: 528 AAGLSIQ--DPRER 539



 Score = 76.6 bits (187), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 65/104 (62%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIAC 93
            LPV+Q +  ++  +   +VVI+AG+TG GK+TQ+P+  ++ G      I  +QPRR+A 
Sbjct: 85  GLPVSQKRDALLAAIRDHQVVIVAGETGSGKTTQLPKMCLELGRGVRGMIGHSQPRRLAA 144

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S+++R+A+E  +     VGY++RF     E T +  +T+G+LL
Sbjct: 145 RSVAERIAHELETPLGGCVGYKVRFSDQVGENTLVKLMTDGILL 188



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 189  AEIQQDRMLMQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPQRFSR 248

Query: 1174 YFNRIAKDLLSGST 1187
            +FN+     +SG T
Sbjct: 249  HFNQAPIIEVSGRT 262


>gi|401677783|ref|ZP_10809755.1| ATP-dependent helicase HrpA [Enterobacter sp. SST3]
 gi|400214898|gb|EJO45812.1| ATP-dependent helicase HrpA [Enterobacter sp. SST3]
          Length = 1300

 Score =  259 bits (663), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+       GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGNESAGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     +LPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALSKRDLRHTE--ILPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQATVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQATVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            + + R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTAANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|423108142|ref|ZP_17095837.1| ATP-dependent RNA helicase hrpA [Klebsiella oxytoca 10-5243]
 gi|376386051|gb|EHS98770.1| ATP-dependent RNA helicase hrpA [Klebsiella oxytoca 10-5243]
          Length = 1300

 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 248/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR +P+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTFPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESAGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF  A  G R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ-AHSG-RRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSDGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D +  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFMAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSDGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQAILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|343516496|ref|ZP_08753531.1| ATP-dependent RNA helicase HrpA [Vibrio sp. N418]
 gi|342796081|gb|EGU31776.1| ATP-dependent RNA helicase HrpA [Vibrio sp. N418]
          Length = 1309

 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 145/393 (36%), Positives = 230/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++KII+ SATI+ E F  
Sbjct: 192 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKIIITSATIDPERFSK 251

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A II+V GR YP+   Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 252 HFSN-APIIEVSGRTYPVDTRYRPLSGYDDVDRDQLE-GIFEAVDELCDEGL-----GDI 304

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N K  G  ++PL++ LS  EQ+R+F   P   R+ +++TN
Sbjct: 305 LIFMNGEREIRDTADALSKRNLK--GTEIVPLYARLSASEQNRIFQ--PHAGRRIVLATN 360

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 361 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 420

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N++  VR L
Sbjct: 421 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNVQDGVRLL 480

Query: 609 TQHGAID-----SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GA++     +K+R+T+ GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 481 EELGALNGDVKEAKKRLTNTGRQLARLPIDPRLARMVLEAPKYGALKEVMIVAAALSIQD 540

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT +N +
Sbjct: 541 PRERPSDKKQSSDDKHRRFFHEDSDFLTFVNLW 573



 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRVEEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAID-----SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           N++  VR L + GA++     +K+R+T  GR L+ LP+D  L +M++    +  +  +++
Sbjct: 472 NVQDGVRLLEELGALNGDVKEAKKRLTNTGRQLARLPIDPRLARMVLEAPKYGALKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 VAAALSIQ--DPRER 544



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 89  LPVSQKKDDIAKAIAEHQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 148

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  +Q    VGY++RF     E T+I  +T+G+LL
Sbjct: 149 SVANRIAEEMQTQLGEFVGYKVRFNDQISENTQIKLMTDGILL 191



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++KII+ SATI+ E F  
Sbjct: 192  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKIIITSATIDPERFSK 251

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 252  HFSNAPIIEVSGRT 265



 Score = 40.0 bits (92), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 192 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 225


>gi|428182836|gb|EKX51695.1| hypothetical protein GUITHDRAFT_157138 [Guillardia theta CCMP2712]
          Length = 678

 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 240/441 (54%), Gaps = 33/441 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE----VKIILMSATINIEL 365
           E+  D  L  Y  +VLDE HER L+ + LL ++K L  S  E    +K+++MSAT+  E 
Sbjct: 150 ELMLDGELRRYSTIVLDEAHERSLNTELLLALVKRLQKSRQESSFPLKVVIMSATLEAEA 209

Query: 366 FHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRT 423
           +  +F    KI+KVPGR+YP+++ Y P            +P P     +++   + +   
Sbjct: 210 YSRFFLD-CKIVKVPGRMYPVEVLYTP------------EPQPDFLDAAVVTCLQIHLEE 256

Query: 424 ERGDVLIFMSGISEISSIVRAAQEYNE----KSQGWIVLPLHSTLSLEEQDRVFHYAPEG 479
            RGDVL F+ G  +I    +  QE +          +  PL++ L   EQ   F  APEG
Sbjct: 257 PRGDVLCFLCGQDQIEDAAKVLQERSRALPPSCDKLMPCPLYAALPPSEQMHAFAPAPEG 316

Query: 480 LRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQE------FWISKASAE 533
            RK I++TNIAE+SITID I++VVD+G VK   YD    M +L E        ISKA A+
Sbjct: 317 TRKIILATNIAESSITIDSIKYVVDNGLVKARIYDPKHDMESLHEELQNACIPISKAQAK 376

Query: 534 QRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFL 593
           QR GRAGR   G  YRLY+E Q+  L+  + PEI+R  + S++L L  MG+ ++ +F F+
Sbjct: 377 QRAGRAGRVSSGKAYRLYTEAQFEELSAAAVPEIKRCRLSSMVLQLFVMGIDNLMEFEFM 436

Query: 594 EAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
           + PP   +  ++  L    A+D  + +T LGR ++ LP++ P  K+L+  S F   + +L
Sbjct: 437 DTPPILLLTKALEQLFLLQALDKNKTLTDLGRKMAMLPLEPPYAKLLLSSSKFSCSEEIL 496

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ A+LSV S F N A +  +   AR  + S  GD +T L  Y  WL  KKDR    +WC
Sbjct: 497 TIVAMLSVDSIFFNPAGKREEAARARHLISSADGDHMTYLKVYDGWLKSKKDR----EWC 552

Query: 714 KRRGIEEQRFYEVTKLRSQFK 734
            +  I  +   +V  +R+Q +
Sbjct: 553 HQYFINSRNMKKVEDIRNQLQ 573



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 3/112 (2%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQ 87
           I E +  LPV + + EI+    +   +I+ G+TG GK+TQ+PQ+L  AG+ +   IA TQ
Sbjct: 39  ILEKRKELPVYKARSEILFECRRHATLILVGETGSGKTTQVPQFLFDAGYAKHGMIAVTQ 98

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           PRR+A  S+++RVA E   +    VGY +RFE      TKI F+T+G+LLR+
Sbjct: 99  PRRVAATSVARRVADEFGCRVGEEVGYTVRFEDSTSHSTKIKFMTDGMLLRE 150



 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 70/124 (56%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G  YRLY+E Q+  L+  + PEI+R  + S++L L  MG+ ++ +F F++ PP   
Sbjct: 384 RVSSGKAYRLYTEAQFEELSAAAVPEIKRCRLSSMVLQLFVMGIDNLMEFEFMDTPPILL 443

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +  ++  L    A+D  + +T LGR ++ LP++ P  K+L+  S F   + +L +   L+
Sbjct: 444 LTKALEQLFLLQALDKNKTLTDLGRKMAMLPLEPPYAKLLLSSSKFSCSEEILTIVAMLS 503

Query: 929 FGAI 932
             +I
Sbjct: 504 VDSI 507



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE----VKIILMSATINIELFHTY 1174
            D  L  Y  +VLDE HER L+ + LL ++K L  S  E    +K+++MSAT+  E +  +
Sbjct: 154  DGELRRYSTIVLDEAHERSLNTELLLALVKRLQKSRQESSFPLKVVIMSATLEAEAYSRF 213

Query: 1175 F 1175
            F
Sbjct: 214  F 214


>gi|78048809|ref|YP_364984.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037239|emb|CAJ24984.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1373

 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 249/445 (55%), Gaps = 34/445 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LSSYD +++DE HER L+ DFLLG +K LL   +++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRSDLKLIVTSATIDTERFAR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGP--------YIRILSIIDKKY 420
           +F+  A +I V GR +P+++ Y P+ E D   S+  + G            I++ ID+  
Sbjct: 240 HFDD-APVISVEGRTFPVEVRYRPL-EGDTGDSDDGEHGSGRDGERSVNDAIVAAIDEIT 297

Query: 421 PRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QDRVF+  P 
Sbjct: 298 RIDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDRVFNPGPR 353

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
             R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR GR
Sbjct: 354 --RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMGR 411

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
            GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP  
Sbjct: 412 CGRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDE 471

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
             +    + L + GAID++ R+T+ GR ++ LPVD+ L +MLV       +  ++ +AA 
Sbjct: 472 RALADGWQQLLELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAF 531

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDRVRSK- 710
           L +Q P      R P+   A     +   D        L + +AY++   V +D  +SK 
Sbjct: 532 LGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDLTQSKL 584

Query: 711 -KWCKRRGIEEQRFYEVTKLRSQFK 734
             WC R  +   R  E  +L  Q +
Sbjct: 585 RDWCNRHFLGFLRMREWRELHRQLR 609



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 413 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 472

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 473 ALADGWQQLLELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 530

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 531 FLGIQDPRER 540



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           + LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  DQLPIAREAERIIALIRNHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +     VG+Q+RF     ++++I F+T+G+LL
Sbjct: 135 ARAVAARVADELKTPLGTTVGFQVRFTDRVSDQSRIKFMTDGILL 179



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 47/63 (74%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LSSYD +++DE HER L+ DFLLG +K LL   +++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRSDLKLIVTSATIDTERFAR 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LSSYD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYL 213



 Score = 44.3 bits (103), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 482  LELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAAFLGIQDPRE 539

Query: 1037 R 1037
            R
Sbjct: 540  R 540



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M+++
Sbjct: 482  LELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 528


>gi|432718481|ref|ZP_19953453.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE9]
 gi|431264328|gb|ELF56043.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE9]
          Length = 1300

 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQVSDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|417682170|ref|ZP_12331536.1| ATP-dependent helicase HrpA [Shigella boydii 3594-74]
 gi|332095434|gb|EGJ00456.1| ATP-dependent helicase HrpA [Shigella boydii 3594-74]
          Length = 648

 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ S TI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSGTIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ S TI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSGTIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|218548940|ref|YP_002382731.1| ATP-dependent RNA helicase HrpA [Escherichia fergusonii ATCC 35469]
 gi|218356481|emb|CAQ89104.1| ATP-dependent helicase [Escherichia fergusonii ATCC 35469]
          Length = 1281

 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFND-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNDAPIIEVSGRT 234


>gi|17554326|ref|NP_499212.1| Protein MOG-1 [Caenorhabditis elegans]
 gi|732174|sp|P34498.2|MOG1_CAEEL RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA
           helicase mog-1; AltName: Full=Masculinization of
           germline protein 1; AltName: Full=Sex determination
           protein mog-1
 gi|3878176|emb|CAA82662.1| Protein MOG-1 [Caenorhabditis elegans]
 gi|4249768|gb|AAD13795.1| sex determination protein MOG-1 [Caenorhabditis elegans]
          Length = 1131

 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 151/434 (34%), Positives = 247/434 (56%), Gaps = 18/434 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L  Y  +++DE HER L+ D L G+++ ++   A++K+I+ SAT++ + F  +
Sbjct: 545 ECLGDGSLDQYSAIIMDEAHERSLNTDVLFGLLREVIAKRADLKLIVTSATMDADKFADF 604

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F        +PGR +P++L +H      RT  E        + ++I    +     GD+L
Sbjct: 605 FGGNCPTFTIPGRTFPVEL-FHA-----RTPVEDYVDAAVKQAVTI----HLGGMDGDIL 654

Query: 430 IFMSGISEISSIVRAAQEYN---EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           IFM G  +I       +E     +++    VLP++S L  + Q ++F  AP G+RK IV+
Sbjct: 655 IFMPGQEDIECTCEMIKEKLGELDEAPPLAVLPIYSQLPSDLQAKIFQRAPGGMRKAIVA 714

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TNIAETS+T+DGI FV+D G  K   Y+    M  L  F +S+ASA QR GRAGRTGPG 
Sbjct: 715 TNIAETSLTVDGILFVIDPGFCKMKVYNPRIGMDALSIFPVSQASANQRTGRAGRTGPGQ 774

Query: 547 CYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           CYRLY+E Q+   L + + PEI+R ++ +++L L  +G+ D+ KF F++APP +N+ +S+
Sbjct: 775 CYRLYTERQFKDELLKSTVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQDNMLNSM 834

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
             L   GA+D+  ++T +GR + + P+D  L KML+  +     D VL++ ++LSV + F
Sbjct: 835 YQLWTLGALDNTGQLTPMGRKMVEFPLDPTLSKMLIMSAEMGCSDEVLTIVSMLSVPAIF 894

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYE 725
                R+ + +  +++ +    D LT LN Y +W   K     S KWC    +  +   +
Sbjct: 895 FRPKGREEEADAKKEKFQVPESDHLTFLNVYIQWRTHKY----SAKWCADNYLHVKALKK 950

Query: 726 VTKLRSQFKQVLGD 739
           V ++R+Q K+++ D
Sbjct: 951 VREVRAQLKEIMQD 964



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 85/138 (61%), Gaps = 16/138 (11%)

Query: 18  DFKQKEKFSTLMK-------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTG 64
           ++K+  +F++ MK             I++ +  LPV   +Q++++ + +  VVII G+TG
Sbjct: 408 NYKESHQFASHMKDNEAVSDFAMEKSIKQQREYLPVFACRQKMMNVIRENNVVIIVGETG 467

Query: 65  CGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKH 121
            GK+TQ+ QYL++ GF     I CTQPRR+A +S+++RVA E        VGY IRFE  
Sbjct: 468 SGKTTQLAQYLLEDGFGDSGLIGCTQPRRVAAMSVARRVADEMGVDLGQDVGYAIRFEDC 527

Query: 122 RREKTKIVFITEGLLLRQ 139
             EKT I ++T+G+LLR+
Sbjct: 528 TSEKTIIKYMTDGILLRE 545



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 79/125 (63%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E Q+   L + + PEI+R ++ +++L L  +G+ D+ KF F++APP +
Sbjct: 769 RTGPGQCYRLYTERQFKDELLKSTVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQD 828

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           N+ +S+  L   GA+D+  ++T +GR + + P+D  L KML+  +     D +L +   L
Sbjct: 829 NMLNSMYQLWTLGALDNTGQLTPMGRKMVEFPLDPTLSKMLIMSAEMGCSDEVLTIVSML 888

Query: 928 NFGAI 932
           +  AI
Sbjct: 889 SVPAI 893



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 37/58 (63%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
             D  L  Y  +++DE HER L+ D L G+++ ++   A++K+I+ SAT++ + F  +F
Sbjct: 548  GDGSLDQYSAIIMDEAHERSLNTDVLFGLLREVIAKRADLKLIVTSATMDADKFADFF 605


>gi|294636290|ref|ZP_06714692.1| ATP-dependent helicase HrpA, partial [Edwardsiella tarda ATCC
           23685]
 gi|291090426|gb|EFE22987.1| ATP-dependent helicase HrpA [Edwardsiella tarda ATCC 23685]
          Length = 1266

 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 248/445 (55%), Gaps = 28/445 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 199 AEIQQDRMLMQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPQRFSR 258

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN+ A II+V GR YP+++ Y PI + D    E+      I  +  +  + P    GD+
Sbjct: 259 HFNQ-APIIEVSGRTYPVEVRYRPIADGD---GERDQTQAIIDAVDELGHEAP----GDI 310

Query: 429 LIFMSGISEI----SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           LIFMSG  EI     ++ R A  + E      VLPL++ LS  EQ+RVFH      R+ +
Sbjct: 311 LIFMSGEREIRDTADALTRLALPHTE------VLPLYARLSAAEQNRVFH--SHSGRRIV 362

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   
Sbjct: 363 LATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSD 422

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G+C RLY E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  
Sbjct: 423 GICIRLYDEQDFLSRPAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDG 482

Query: 605 VRSLTQHGAIDSKER----VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           VR L + GA+   +R    +T+LGR L+ LP+D  L +M++ G     +  V+ +AA LS
Sbjct: 483 VRLLEELGAVTLNQRGHQQLTALGRQLAQLPIDPRLARMVIEGERNGALREVMVIAAGLS 542

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P    A R    +   +  +    D L ++N + ++L  ++  + S   ++ CK   
Sbjct: 543 IQDPRERPADRPQAADEKHRRFQDKESDFLALVNLW-DYLREQQQALSSNQLRRLCKSEF 601

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+   G 
Sbjct: 602 LNYLRVREWQDIYTQLRQVVKSLGF 626



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLY E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 418 GRVSDGICIRLYDEQDFLSRPAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 477

Query: 868 NIESSVRSLTQHGAIDSKER----VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI+  VR L + GA+   +R    +T LGR L+ LP+D  L +M++ G     +  ++++
Sbjct: 478 NIQDGVRLLEELGAVTLNQRGHQQLTALGRQLAQLPIDPRLARMVIEGERNGALREVMVI 537

Query: 924 DLALNFGAIDSKER 937
              L+    D +ER
Sbjct: 538 AAGLSIQ--DPRER 549



 Score = 76.6 bits (187), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 65/104 (62%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIAC 93
            LPV+Q +  ++  +   +VVI+AG+TG GK+TQ+P+  ++ G      I  +QPRR+A 
Sbjct: 95  GLPVSQKRDALLAAIRDHQVVIVAGETGSGKTTQLPKMCLELGRGVRGMIGHSQPRRLAA 154

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S+++R+A+E  +     VGY++RF     E T +  +T+G+LL
Sbjct: 155 RSVAERIAHELETPLGGCVGYKVRFSDQVGENTLVKLMTDGILL 198



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 199  AEIQQDRMLMQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPQRFSR 258

Query: 1174 YFNRIAKDLLSGST 1187
            +FN+     +SG T
Sbjct: 259  HFNQAPIIEVSGRT 272


>gi|375265434|ref|YP_005022877.1| ATP-dependent RNA helicase HrpA [Vibrio sp. EJY3]
 gi|369840755|gb|AEX21899.1| ATP-dependent RNA helicase HrpA [Vibrio sp. EJY3]
          Length = 1278

 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 145/393 (36%), Positives = 231/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   +    ++L+ G +  +  + D+       GD+
Sbjct: 221 HFND-APIIEVSGRTYPVETRYRPLSGDEDNDRDQLE-GIFEAVDELCDEGL-----GDI 273

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 274 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 329

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 330 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 389

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 390 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 449

Query: 609 TQHGAIDS-----KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI+S     K+R+T  GR L+ LP+D  L +M++    +  +  ++ +AA LS+Q 
Sbjct: 450 EELGAINSDAKDPKKRLTPTGRQLARLPIDPRLARMVLEAPKYGALKELMVIAAALSIQD 509

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT++N +
Sbjct: 510 PRERPSDKQQSSDDKHRRFFHEESDFLTLVNLW 542



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 381 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 440

Query: 868 NIESSVRSLTQHGAIDS-----KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI+S     K+R+T  GR L+ LP+D  L +M++    +  +  +++
Sbjct: 441 NIQDGVRLLEELGAINSDAKDPKKRLTPTGRQLARLPIDPRLARMVLEAPKYGALKELMV 500

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 501 IAAALSIQ--DPRER 513



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K +I   + + +VVIIAG+TG GK+TQIP+   + G   F  I  TQPRR+A  
Sbjct: 58  LPVSQKKDDIAKAIDENQVVIIAGETGSGKTTQIPKICAELGRGKFGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 160



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNDAPIIEVSGRT 234



 Score = 40.0 bits (92), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 194


>gi|114665936|ref|XP_523842.2| PREDICTED: putative ATP-dependent RNA helicase DHX33 isoform 2 [Pan
           troglodytes]
 gi|397477696|ref|XP_003810205.1| PREDICTED: putative ATP-dependent RNA helicase DHX33 [Pan paniscus]
 gi|410215056|gb|JAA04747.1| DEAH (Asp-Glu-Ala-His) box polypeptide 33 [Pan troglodytes]
 gi|410256738|gb|JAA16336.1| DEAH (Asp-Glu-Ala-His) box polypeptide 33 [Pan troglodytes]
 gi|410303826|gb|JAA30513.1| DEAH (Asp-Glu-Ala-His) box polypeptide 33 [Pan troglodytes]
 gi|410328649|gb|JAA33271.1| DEAH (Asp-Glu-Ala-His) box polypeptide 33 [Pan troglodytes]
          Length = 707

 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 178 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 237

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 238 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 285

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 286 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 343

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 344 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 403

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 404 GRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 463

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 464 SPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 523

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 524 TIVSLLSVDSVLHNPPSRREEVQGVRKKFISSEGDHMTLLNIYRTFKNLGGNKD------ 577

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WCK   +  +    V ++R+Q + +
Sbjct: 578 WCKENFVNSKNMMLVAEVRAQLRDI 602



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 71  RRSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 130

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RF+    E T+I F+T+G+LLR+
Sbjct: 131 AAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLRE 178



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 408 REDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 467

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 468 IQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 525



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 181  SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFS 240

Query: 1173 TYFN 1176
             YFN
Sbjct: 241  QYFN 244


>gi|423114117|ref|ZP_17101808.1| ATP-dependent RNA helicase hrpA [Klebsiella oxytoca 10-5245]
 gi|376386378|gb|EHS99090.1| ATP-dependent RNA helicase hrpA [Klebsiella oxytoca 10-5245]
          Length = 1300

 Score =  259 bits (662), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 248/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR +P+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTFPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESAGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF  A  G R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ-AHSG-RRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSDGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D +  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFMAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSDGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQAILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|440287715|ref|YP_007340480.1| ATP-dependent helicase HrpA [Enterobacteriaceae bacterium strain
           FGI 57]
 gi|440047237|gb|AGB78295.1| ATP-dependent helicase HrpA [Enterobacteriaceae bacterium strain
           FGI 57]
          Length = 1300

 Score =  259 bits (662), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESAGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALSKRDLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRQCRTDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAVRDNQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDSTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|417850693|ref|ZP_12496543.1| ATP-dependent RNA helicase HrpA [Pasteurella multocida subsp.
           gallicida str. Anand1_poultry]
 gi|338220448|gb|EGP05959.1| ATP-dependent RNA helicase HrpA [Pasteurella multocida subsp.
           gallicida str. Anand1_poultry]
          Length = 1303

 Score =  259 bits (662), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 168/495 (33%), Positives = 266/495 (53%), Gaps = 35/495 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 185 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 244

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE    + ++L       IL  +D+      RGD+
Sbjct: 245 HFNN-APIIEVSGRTYPVEVRYRPVVE--NEEQDQLQA-----ILDAVDELQAEG-RGDI 295

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ + K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 296 LIFMNGEREIRDTAEALQKQDLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 351

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+  I++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 352 VAETSLTVPVIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 411

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   NI+  ++ L
Sbjct: 412 RLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRNIQDGIKLL 471

Query: 609 TQHGA-------IDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +  A          K ++T  G+ L+ LPVD  L KML+     + +  V+ + + LS+
Sbjct: 472 EELEAFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKLNCLHEVMIIVSALSI 531

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYK----EWLGVKKDRVRSKKWCKRRG 717
           Q P      +        +       D L  LN ++    +   + K++ R  + C++  
Sbjct: 532 QDPRERPQEKQQSAGDKHRRFADRKSDFLAFLNLWQFIQTQQKALSKNQFR--RLCQKDY 589

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   +  Q +  + + GL   I    A  +    AL  G   LL  I  K++E
Sbjct: 590 LNYLRIREWQDIYHQIRLTVREMGL--PINSQAAEYAQIHTALLSG---LLSHIGMKESE 644

Query: 778 EAPKRRKMLKADNAY 792
           ++    + L A NAY
Sbjct: 645 KS----QYLGARNAY 655



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   N
Sbjct: 404 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIDAFPFVDAPDKRN 463

Query: 869 IESSVRSLTQHGA-------IDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L +  A          K ++T  G+ L+ LPVD  L KML+     + +  ++
Sbjct: 464 IQDGIKLLEELEAFHFVKTKFGEKRQLTQQGKQLAQLPVDPRLAKMLLTAVKLNCLHEVM 523

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 524 IIVSALSIQ--DPRER 537



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 70/112 (62%), Gaps = 3/112 (2%)

Query: 29  MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IAC 85
           +K  E   +LPV+Q K EI   + + +VV+I G+TG GK+TQ+P+  ++ G      I  
Sbjct: 73  VKTIEFPENLPVSQRKAEIQKLISQHQVVVITGETGSGKTTQLPKMCLELGRGTKGLIGH 132

Query: 86  TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           TQPRRIA  S++ R+A E  ++  +LVGY++RF     + + +  +T+G+LL
Sbjct: 133 TQPRRIAARSVATRIAEELKTELGDLVGYKVRFNDQISDNSMVKLMTDGILL 184



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 185  AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSK 244

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 245  HFNNAPIIEVSGRT 258



 Score = 43.5 bits (101), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD LI+DE HER L  DF+LG +
Sbjct: 185 AEIQNDRFLNQYDTLIIDEAHERSLNNDFILGYL 218


>gi|394988108|ref|ZP_10380946.1| hypothetical protein SCD_00510 [Sulfuricella denitrificans skB26]
 gi|393792566|dbj|GAB70585.1| hypothetical protein SCD_00510 [Sulfuricella denitrificans skB26]
          Length = 1308

 Score =  259 bits (662), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 152/441 (34%), Positives = 246/441 (55%), Gaps = 13/441 (2%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D FLS+YD +++DE HER L+ DFLLG +K +L    ++K+I+ SATI+ E F  
Sbjct: 162 AETQNDRFLSAYDTIIIDEAHERSLNIDFLLGYLKQILPKRPDLKVIVTSATIDAERFSN 221

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPI----VELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424
           +F+  A +I+V GRLYP+++ Y P+     E  + + +  +      IL  +D+   RT 
Sbjct: 222 HFDG-APVIEVSGRLYPVEMRYRPLHQRKNEAGKIEDDISEANIEEAILDAVDE-VSRTG 279

Query: 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            GD+LIF+ G  EI     A ++++    G  +LPL + LS  EQ+RVF   P G R+ +
Sbjct: 280 SGDILIFLPGEREIRDTAEALRKHH--PAGSEILPLFARLSAAEQERVFK--PGGARRIV 335

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TN+AETS+T+ GIR+V+D G  + + Y   +K+  LQ   IS+ASA QR GR GR   
Sbjct: 336 LATNVAETSLTVPGIRYVIDPGYARLLRYSYRSKVERLQVEKISQASANQRAGRCGRVMS 395

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           GVC RLY+EE ++    ++ PEIRR ++ +++L +  +GL D+  FPFLE P +  I   
Sbjct: 396 GVCVRLYAEEDFNTRPAFTDPEIRRSNLAAVILRMKALGLADIEDFPFLEPPDSRAIVDG 455

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            + L + GA+D++  +T  GR L+  P+D  + +M++     + +  VL +A+ LSVQ P
Sbjct: 456 FKLLEELGAVDAQRALTETGRQLAKFPIDPRIARMILAAKAENCLTEVLIIASALSVQDP 515

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNA---YKEWLGVKKDRVRSKKWCKRRGIEEQ 721
                 R    +   ++ + ++ D +  +     Y E L  KK   +    C+   +   
Sbjct: 516 RDRPMDRQQAADDKHRQFQDDNSDFVAYIKLWAFYDEALKHKKSNRKLLDLCREHFLSAT 575

Query: 722 RFYEVTKLRSQFKQVLGDSGL 742
           R  E  ++  Q    + + GL
Sbjct: 576 RLREWREIHGQLHAQVVEIGL 596



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 71/121 (58%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLY+EE ++    ++ PEIRR ++ +++L +  +GL D+  FPFLE P + 
Sbjct: 391 GRVMSGVCVRLYAEEDFNTRPAFTDPEIRRSNLAAVILRMKALGLADIEDFPFLEPPDSR 450

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I    + L + GA+D++  +T  GR L+  P+D  + +M++     + +  +L++  AL
Sbjct: 451 AIVDGFKLLEELGAVDAQRALTETGRQLAKFPIDPRIARMILAAKAENCLTEVLIIASAL 510

Query: 928 N 928
           +
Sbjct: 511 S 511



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 7/105 (6%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR-----IACTQPRRIA 92
           LPV+  + +I   +   +VVI+ G+TG GK+TQ+P+  ++   QR     I  TQPRRIA
Sbjct: 59  LPVSGKRADIAAAIAANQVVIVCGETGSGKTTQLPKICLE--LQRGAAGLIGHTQPRRIA 116

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R++ E  S    +VGY++RF  H    + +  +T+G+LL
Sbjct: 117 ARTVASRISQELKSPLGQIVGYKVRFSDHTSADSYVKLMTDGILL 161



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            D FLS+YD +++DE HER L+ DFLLG +K +L    ++K+I+ SATI+ E F  +F+
Sbjct: 167  DRFLSAYDTIIIDEAHERSLNIDFLLGYLKQILPKRPDLKVIVTSATIDAERFSNHFD 224



 Score = 42.7 bits (99), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            +   D FLS+YD +I+DE HER L  DFLLG +
Sbjct: 162 AETQNDRFLSAYDTIIIDEAHERSLNIDFLLGYL 195


>gi|417294744|ref|ZP_12082005.1| ATP-dependent helicase HrpA [Escherichia coli 900105 (10e)]
 gi|419209130|ref|ZP_13752230.1| ATP-dependent helicase HrpA [Escherichia coli DEC8C]
 gi|419215301|ref|ZP_13758316.1| ATP-dependent helicase HrpA [Escherichia coli DEC8D]
 gi|419226381|ref|ZP_13769252.1| ATP-dependent helicase HrpA [Escherichia coli DEC9A]
 gi|419231970|ref|ZP_13774755.1| ATP-dependent helicase HrpA [Escherichia coli DEC9B]
 gi|419237451|ref|ZP_13780183.1| ATP-dependent helicase HrpA [Escherichia coli DEC9C]
 gi|419242963|ref|ZP_13785608.1| ATP-dependent helicase HrpA [Escherichia coli DEC9D]
 gi|419248713|ref|ZP_13791309.1| ATP-dependent helicase HrpA [Escherichia coli DEC9E]
 gi|419254535|ref|ZP_13797063.1| ATP-dependent helicase HrpA [Escherichia coli DEC10A]
 gi|419260787|ref|ZP_13803217.1| ATP-dependent helicase HrpA [Escherichia coli DEC10B]
 gi|419266774|ref|ZP_13809139.1| ATP-dependent helicase HrpA [Escherichia coli DEC10C]
 gi|419272242|ref|ZP_13814548.1| ATP-dependent helicase HrpA [Escherichia coli DEC10D]
 gi|419283694|ref|ZP_13825888.1| ATP-dependent helicase HrpA [Escherichia coli DEC10F]
 gi|425378996|ref|ZP_18763164.1| ATP-dependent helicase HrpA [Escherichia coli EC1865]
 gi|378056939|gb|EHW19177.1| ATP-dependent helicase HrpA [Escherichia coli DEC8C]
 gi|378065259|gb|EHW27408.1| ATP-dependent helicase HrpA [Escherichia coli DEC8D]
 gi|378077913|gb|EHW39906.1| ATP-dependent helicase HrpA [Escherichia coli DEC9A]
 gi|378080187|gb|EHW42152.1| ATP-dependent helicase HrpA [Escherichia coli DEC9B]
 gi|378086123|gb|EHW48003.1| ATP-dependent helicase HrpA [Escherichia coli DEC9C]
 gi|378093170|gb|EHW54988.1| ATP-dependent helicase HrpA [Escherichia coli DEC9D]
 gi|378097849|gb|EHW59596.1| ATP-dependent helicase HrpA [Escherichia coli DEC9E]
 gi|378103192|gb|EHW64863.1| ATP-dependent helicase HrpA [Escherichia coli DEC10A]
 gi|378109552|gb|EHW71158.1| ATP-dependent helicase HrpA [Escherichia coli DEC10B]
 gi|378113563|gb|EHW75127.1| ATP-dependent helicase HrpA [Escherichia coli DEC10C]
 gi|378118855|gb|EHW80356.1| ATP-dependent helicase HrpA [Escherichia coli DEC10D]
 gi|378135863|gb|EHW97165.1| ATP-dependent helicase HrpA [Escherichia coli DEC10F]
 gi|386261824|gb|EIJ17284.1| ATP-dependent helicase HrpA [Escherichia coli 900105 (10e)]
 gi|408299815|gb|EKJ17581.1| ATP-dependent helicase HrpA [Escherichia coli EC1865]
          Length = 1300

 Score =  259 bits (662), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRIDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|10438200|dbj|BAB15193.1| unnamed protein product [Homo sapiens]
          Length = 707

 Score =  259 bits (662), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 178 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 237

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 238 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 285

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 286 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 343

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 344 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 403

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 404 GRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 463

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 464 SPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 523

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 524 TIVSLLSVDSVLHNPPSRREEVQGVRKKFISSEGDHMTLLNIYRTFKNLGGNKD------ 577

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WCK   +  +    V ++R+Q + +
Sbjct: 578 WCKENFVNSKNMTLVAEVRAQLRDI 602



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 70/108 (64%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 71  RRSLPILQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 130

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RF+    E T I F+T+G+LLR+
Sbjct: 131 AAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTGIKFLTDGMLLRE 178



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 408 REDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 467

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 468 IQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 525



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 181  SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFS 240

Query: 1173 TYFN 1176
             YFN
Sbjct: 241  QYFN 244


>gi|410050958|ref|XP_003953004.1| PREDICTED: putative ATP-dependent RNA helicase DHX33 [Pan
           troglodytes]
          Length = 534

 Score =  259 bits (662), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 5   EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 64

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 65  LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 112

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 113 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 170

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 171 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 230

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 231 GRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 290

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 291 SPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 350

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 351 TIVSLLSVDSVLHNPPSRREEVQGVRKKFISSEGDHMTLLNIYRTFKNLGGNKD------ 404

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WCK   +  +    V ++R+Q + +
Sbjct: 405 WCKENFVNSKNMMLVAEVRAQLRDI 429



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 235 REDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 294

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 295 IQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 352



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 8    SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFS 67

Query: 1173 TYFN 1176
             YFN
Sbjct: 68   QYFN 71


>gi|426383746|ref|XP_004058438.1| PREDICTED: putative ATP-dependent RNA helicase DHX33 isoform 2
           [Gorilla gorilla gorilla]
          Length = 534

 Score =  259 bits (662), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 5   EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 64

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 65  LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 112

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 113 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 170

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 171 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 230

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 231 GRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 290

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 291 SPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 350

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 351 TIVSLLSVDSVLHNPPSRREEVQGVRKKFISSEGDHMTLLNIYRTFRNLGGNKD------ 404

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WCK   +  +    V ++R+Q + +
Sbjct: 405 WCKENFVNSKNMMLVAEVRAQLRDI 429



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 235 REDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 294

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 295 IQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 352



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 8    SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFS 67

Query: 1173 TYFN 1176
             YFN
Sbjct: 68   QYFN 71


>gi|416629350|ref|ZP_11800066.1| ATP-dependent RNA helicase HrpA, partial [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323199401|gb|EFZ84495.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
          Length = 603

 Score =  259 bits (662), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 159/436 (36%), Positives = 241/436 (55%), Gaps = 21/436 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQ 735
             R  E   + +Q +Q
Sbjct: 588 YLRVREWQDIYTQLRQ 603



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 461

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   +++
Sbjct: 462 IQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMII 521

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 522 TSALSIQ--DPRER 533



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|260855139|ref|YP_003229030.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           11368]
 gi|415781727|ref|ZP_11491251.1| ATP-dependent helicase HrpA [Escherichia coli EPECa14]
 gi|419899278|ref|ZP_14418795.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           CVM9942]
 gi|419910031|ref|ZP_14428562.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           CVM10026]
 gi|420105256|ref|ZP_14615803.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H11 str.
           CVM9455]
 gi|420109916|ref|ZP_14619993.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H11 str.
           CVM9553]
 gi|420114493|ref|ZP_14624147.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           CVM10021]
 gi|420120992|ref|ZP_14630146.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           CVM10030]
 gi|420127290|ref|ZP_14635937.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           CVM10224]
 gi|420135590|ref|ZP_14643672.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           CVM9952]
 gi|424748948|ref|ZP_18177073.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           CFSAN001629]
 gi|424758885|ref|ZP_18186560.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H11 str.
           CFSAN001630]
 gi|257753788|dbj|BAI25290.1| ATP-dependent helicase HrpA [Escherichia coli O26:H11 str. 11368]
 gi|323157335|gb|EFZ43451.1| ATP-dependent helicase HrpA [Escherichia coli EPECa14]
 gi|388372214|gb|EIL35653.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           CVM10026]
 gi|388380182|gb|EIL42801.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           CVM9942]
 gi|394389249|gb|EJE66402.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           CVM10224]
 gi|394399156|gb|EJE75227.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H11 str.
           CVM9455]
 gi|394405391|gb|EJE80581.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H11 str.
           CVM9553]
 gi|394409236|gb|EJE83789.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           CVM10021]
 gi|394419803|gb|EJE93376.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           CVM9952]
 gi|394427617|gb|EJF00289.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           CVM10030]
 gi|421943340|gb|EKU00631.1| ATP-dependent RNA helicase HrpA [Escherichia coli O26:H11 str.
           CFSAN001629]
 gi|421947910|gb|EKU04966.1| ATP-dependent RNA helicase HrpA [Escherichia coli O111:H11 str.
           CFSAN001630]
          Length = 1281

 Score =  259 bits (662), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRIDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|392545634|ref|ZP_10292771.1| helicase, ATP-dependent [Pseudoalteromonas rubra ATCC 29570]
          Length = 1294

 Score =  259 bits (661), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 162/463 (34%), Positives = 254/463 (54%), Gaps = 18/463 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 174 AEIQQDRYLNQYDTIIIDEAHERSLNIDFILGYLKNLLPKRPDLKVIITSATIDPERFSK 233

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+++    +SE  +      I   +D+       GD+
Sbjct: 234 HFNN-APIIEVSGRTYPVEVRYRPVIDASGDESEA-ENDQLQGIFDAVDELCAEGP-GDI 290

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N K  G  +LPL++ LS  EQ+R+F  A    R+ ++STN
Sbjct: 291 LIFMNGEREIRDTADALSKRNLK--GVEILPLYARLSNAEQNRIF--AAHSHRRIVLSTN 346

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GIR+V+D G  +   Y    K+  L    +S+ASA QR GR GR   GVC 
Sbjct: 347 VAETSLTVPGIRYVIDPGTARISRYSYRTKVQRLPIEAVSQASANQRMGRCGRVAAGVCI 406

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L ++ +GLGD+++FPF++AP   NI   V  L
Sbjct: 407 RLYSEEDFLGRPEFTDPEILRTNLASVILQMLALGLGDIKRFPFVQAPDNRNITDGVSLL 466

Query: 609 TQHGAIDSKER-----VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GA+    R     +T  GR LS LP+D  L +M++  +    +  V+ +AA LS+Q 
Sbjct: 467 EELGAVKPAARREQTSLTQTGRKLSRLPIDPRLARMVLAAAPLGALREVIIIAAALSIQD 526

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKD---RVRSKKWCKRRGIEE 720
           P      +    +      E    D +  LN + ++L  +++   R + +K C++  +  
Sbjct: 527 PRERPQEKRGAADEKHGRFEDADSDFMAFLNLW-QYLEEQQEALSRGQFRKQCQKDFLAY 585

Query: 721 QRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHG 763
            R  E   +  Q   V  + GL     G +AS  +  +AL  G
Sbjct: 586 MRVREWQDIVYQLTTVCTEMGLKAS--GNEASFEAIHQALLSG 626



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLYSEE +    E++ PEI R ++ S++L ++ +GLGD+++FPF++AP   
Sbjct: 398 GRVAAGVCIRLYSEEDFLGRPEFTDPEILRTNLASVILQMLALGLGDIKRFPFVQAPDNR 457

Query: 868 NIESSVRSLTQHGAIDSKER-----VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI   V  L + GA+    R     +T  GR LS LP+D  L +M++  +    +  +++
Sbjct: 458 NITDGVSLLEELGAVKPAARREQTSLTQTGRKLSRLPIDPRLARMVLAAAPLGALREVII 517

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 518 IAAALSIQ--DPRER 530



 Score = 80.1 bits (196), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q K +I   + + +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 70  ALPVSQKKDDIKKAIAENQVVIVAGETGSGKTTQLPKICLELGRGVDGYIGHTQPRRLAA 129

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S+S R+A E   +    VG++IRF     +K+ I  +T+G+LL
Sbjct: 130 RSVSNRIAEELNCELGQEVGFKIRFSDQVSDKSYIKLMTDGILL 173



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 174  AEIQQDRYLNQYDTIIIDEAHERSLNIDFILGYLKNLLPKRPDLKVIITSATIDPERFSK 233

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 234  HFNNAPIIEVSGRT 247


>gi|416891955|ref|ZP_11923480.1| ATP-dependent helicase [Aggregatibacter aphrophilus ATCC 33389]
 gi|347815061|gb|EGY31702.1| ATP-dependent helicase [Aggregatibacter aphrophilus ATCC 33389]
          Length = 1335

 Score =  259 bits (661), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 173/525 (32%), Positives = 267/525 (50%), Gaps = 63/525 (12%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186 AEIQTDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRPDLKVIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD+
Sbjct: 246 HFNH-APIIEVSGRTYPVEVRYRPVVEED-------DRDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ L
Sbjct: 413 RLYSEEDFNNRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLL 472

Query: 609 TQHGAIDSKE---------------------------------------RVTSLGRFLSD 629
            + GAI  K+                                        +T +GR L+ 
Sbjct: 473 EELGAIQPKKIKSYKHDGARFPTRAQNLTDESTRQETRASESTEKKQGWELTPIGRQLAQ 532

Query: 630 LPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDP 689
           LPVD  L KML+    F  +  V+ + + LS+Q P      +    +   +       D 
Sbjct: 533 LPVDPRLAKMLLSAVDFGSVYEVMIIVSALSIQDPRERPTDKQQASDEKHRRFADKKSDF 592

Query: 690 LTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIP 747
           L  LN +      +K+  ++  ++ C++  +   R  E   +  Q +  + + GL   I 
Sbjct: 593 LAFLNLWHYVQEQQKELTKNQFRRQCQKDFLNYLRIREWQDIYQQIRLAVREMGL--PIN 650

Query: 748 GPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAY 792
              A       AL  G   LL  I  K+AE    +++ L A NA+
Sbjct: 651 SEKAEYQQIHTALLSG---LLSHIGLKEAE----KQQYLGARNAH 688



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ G      I  TQPRRIA 
Sbjct: 82  SLPVSQRKAEIEKLLSEHQVIVVAGETGSGKTTQLPKMCLELGLGNLGTIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++  +LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELQTELGDLVGYKVRFNDQISDNTQIKLMTDGILL 185



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 41/170 (24%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSEGICIRLYSEEDFNNRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAIDSKE---------------------------------------RVT 889
           I+  V+ L + GAI  K+                                        +T
Sbjct: 465 IQDGVKLLEELGAIQPKKIKSYKHDGARFPTRAQNLTDESTRQETRASESTEKKQGWELT 524

Query: 890 TLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 939
            +GR L+ LPVD  L KML+    F  +  ++++  AL+    D +ER T
Sbjct: 525 PIGRQLAQLPVDPRLAKMLLSAVDFGSVYEVMIIVSALSIQ--DPRERPT 572



 Score = 67.4 bits (163), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 186  AEIQTDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRPDLKVIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNHAPIIEVSGRT 259



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++ TD FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQTDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|338711137|ref|XP_001918152.2| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase
           DHX33-like [Equus caballus]
          Length = 709

 Score =  259 bits (661), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 256/443 (57%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+++MSAT++++
Sbjct: 180 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQRRRKELGKLPLKVVVMSATMDVD 239

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 240 LFSQYFNG-APVLYLEGRQHPIQIFY--------TKQPQHD---YLHAALVSVFQIHQEA 287

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 288 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPSMLVLPLYASLPYAQQLRVFQGA 345

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 346 PKGYRKVIISTNIAETSITISGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 405

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 406 GRAGREDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 465

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 466 SPDHIQAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPKFAKTILLSPKFHCTEEIL 525

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + ++ RK+  S+ GD +T+LN Y+ +  +  +    K WC
Sbjct: 526 TIVSLLSVDSVLHNPPARRDEVQSVRKKFISSEGDHVTLLNIYRTFKNIGGN----KDWC 581

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    V ++R+Q + +
Sbjct: 582 KENFVNSKNMMLVAEVRAQLRDI 604



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 73/111 (65%), Gaps = 6/111 (5%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVV---IIAGDTGCGKSTQIPQYLVQAGFQR---IACTQP 88
           + SLP+ Q +  ++ ++   R     ++ G+TG GK+TQIPQYL +AG  R   IA TQP
Sbjct: 70  RRSLPIFQARGRLLPSLPGSRAYESEVVLGETGSGKTTQIPQYLYEAGISRQGVIAVTQP 129

Query: 89  RRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           RR+A ISL+ RV+ E  ++   LVGY +RF+    E T+I F+T+G+LLR+
Sbjct: 130 RRVAAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLRE 180



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 410 REDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 469

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 470 IQAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPKFAKTILLSPKFHCTEEILTI 527



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+++MSAT++++LF 
Sbjct: 183  SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQRRRKELGKLPLKVVVMSATMDVDLFS 242

Query: 1173 TYFN 1176
             YFN
Sbjct: 243  QYFN 246


>gi|296102443|ref|YP_003612589.1| hypothetical protein ECL_02090 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056902|gb|ADF61640.1| hypothetical protein ECL_02090 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 1326

 Score =  259 bits (661), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 206 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 265

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVEL-DRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE+ + T+ ++L       I   +D+       GD
Sbjct: 266 HFNN-APIIEVSGRTYPVEVRYRPIVEVAEDTERDQLQA-----IFDAVDE-LGNESAGD 318

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     +LPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 319 ILIFMSGEREIRDTADALSKRDLRHTE--ILPLYARLSNSEQNRVFQ--PHSGRRIVLAT 374

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 375 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 434

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 435 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 494

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 495 LEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 554

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 555 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 613

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 614 YLRVREWQDIYTQLRQVVKELGI 636



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 427 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 486

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 487 NIQDGVRLLEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 546

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 547 ITSALSIQ--DPRER 559



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 102 NLPVSQKKQEILNAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 161

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 162 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 205



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 206  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 265

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 266  HFNNAPIIEVSGRT 279


>gi|113461135|ref|YP_719203.1| ATP-dependent RNA helicase HrpA [Haemophilus somnus 129PT]
 gi|112823178|gb|ABI25267.1| ATP-dependent helicase HrpA [Haemophilus somnus 129PT]
          Length = 1303

 Score =  259 bits (661), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 163/493 (33%), Positives = 269/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+ +D FL+ YD+L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 184 AEIQSDRFLNQYDMLIIDEAHERSLNNDFILGYLKQLLPQRPDLKVIITSATIDVERFSQ 243

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y PIVE +       D      IL+ +D+    +  GD+
Sbjct: 244 HFNH-APIIEVSGRTYPVEVRYRPIVEEE-------DQDQLQGILNAVDELQAESS-GDI 294

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIF++G  EI     A Q+ + K     +LPL + LS +EQ+++FH  P  L++ +++TN
Sbjct: 295 LIFLNGEREIRDTAEALQKLDLKHTE--ILPLFARLSAQEQNKIFH--PSNLKRIVLATN 350

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 351 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 410

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ ++    ++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 411 RLYSEDDFNNRPAFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGMKLL 470

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +  A +        K ++T++G+ L+ LPVD  L KML+    F  +  ++ + A LS+
Sbjct: 471 EELQAFEWKKNKQGEKRQLTAIGKQLAQLPVDPRLAKMLLSAVQFSCLHELMIIVAALSI 530

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKK--DRVRSKKWCKRRGIE 719
           Q P      +    +   +       D L  LN +      +K   + + ++ C++  + 
Sbjct: 531 QDPRERPQEKQQSADDKHRRFADKKSDFLAYLNLWNYIQEQQKILSKNQFRRLCRKEYLN 590

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I   +A  +    AL  G   LL  I  K+ E  
Sbjct: 591 YLRIREWQDIYHQIRLTVREMGL--PINSHEAEYAQIHTALLSG---LLSHIGLKENE-- 643

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 644 --KQQYLGARNAH 654



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 78/122 (63%), Gaps = 4/122 (3%)

Query: 19  FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA 78
           F+  ++ S + KI   QN LPV Q K EI   + + +VV+IAG+TG GK+TQ+P+  ++ 
Sbjct: 63  FRFLQRQSAVQKIEFPQN-LPVNQKKAEIQKLIREHQVVVIAGETGSGKTTQLPKMCLEL 121

Query: 79  GFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
           GF +   I  TQPRRIA  S++ R+A E   +   +VGY++RF     ++T+I  +T+G+
Sbjct: 122 GFGQKGLIGHTQPRRIAARSVAARIAEELNMELGGVVGYKVRFHDQISDETQIKLMTDGI 181

Query: 136 LL 137
           LL
Sbjct: 182 LL 183



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ ++    ++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 403 RVSEGICIRLYSEDDFNNRPAFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 462

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L +  A +        K ++T +G+ L+ LPVD  L KML+    F  +  ++
Sbjct: 463 IQDGMKLLEELQAFEWKKNKQGEKRQLTAIGKQLAQLPVDPRLAKMLLSAVQFSCLHELM 522

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 523 IIVAALSIQ--DPRER 536



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 50/74 (67%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++ +D FL+ YD+L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 184  AEIQSDRFLNQYDMLIIDEAHERSLNNDFILGYLKQLLPQRPDLKVIITSATIDVERFSQ 243

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 244  HFNHAPIIEVSGRT 257



 Score = 44.7 bits (104), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 25/34 (73%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++ +D FL+ YD+LI+DE HER L  DF+LG +
Sbjct: 184 AEIQSDRFLNQYDMLIIDEAHERSLNNDFILGYL 217


>gi|161503275|ref|YP_001570387.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:- str. RSK2980]
 gi|160864622|gb|ABX21245.1| hypothetical protein SARI_01345 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-]
          Length = 1306

 Score =  259 bits (661), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 248/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAI--DSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI  D ++   ++T LGR LS L VD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADGQQTVYKLTPLGRKLSQLSVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    A +    +   +  +    D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 535 DPRERPADKQQASDEKHRRFQDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 466

Query: 868 NIESSVRSLTQHGAI--DSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI  D ++   ++T LGR LS L VD  L +M++       +   ++
Sbjct: 467 NIQDGVRLLEELGAITADGQQTVYKLTPLGRKLSQLSVDPRLARMVLEAQKHGCVREAMI 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 ITSALSIQ--DPRER 539



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 81  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 141 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|448079195|ref|XP_004194335.1| Piso0_004822 [Millerozyma farinosa CBS 7064]
 gi|359375757|emb|CCE86339.1| Piso0_004822 [Millerozyma farinosa CBS 7064]
          Length = 1107

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/433 (35%), Positives = 235/433 (54%), Gaps = 20/433 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  +S Y V++LDE HER +  D L  ++K    S  ++K+I+ SAT++ E F  +
Sbjct: 549 EALYDPIMSRYSVIMLDEAHERTIATDVLFALLKKAAKSNPDLKVIVTSATLDAEKFSNF 608

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           FN    I++VPGR YP+++ Y    ELD   +           L  + + +    RGD+L
Sbjct: 609 FNNCP-ILRVPGRTYPVEVLYTKKPELDYLAA----------ALDTVIQIHVSEPRGDIL 657

Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F++G  EI +    +    +   +     I+LP++S+L  E Q R+F   P   RK I 
Sbjct: 658 VFLTGQEEIDNSCEILAERVKHLGDAIDELIILPVYSSLPSEIQSRIFEPTPPNSRKVIF 717

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETSITIDGI +VVD G VK  +YD    M TL    IS++ A QR GRAGRTGPG
Sbjct: 718 ATNIAETSITIDGIYYVVDPGFVKINAYDSKLGMDTLIVSPISQSQANQRSGRAGRTGPG 777

Query: 546 VCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            CYRLY+E  ++  +   + PEI+R ++   +L L  MG+ D+  F F++ P  + +  +
Sbjct: 778 KCYRLYTENAFNNEMLPNTVPEIQRQNLSHTILMLKAMGINDLMGFDFMDPPSTDTMVKA 837

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           ++ L    A+D +  +T LG+ ++D P++  L K L+  S F   D +L++ A+LSVQ+ 
Sbjct: 838 LQDLYTLSALDDEGYLTDLGKKMADFPMEPALAKTLIMSSEFGCSDEILTIVAMLSVQTV 897

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F     +  + +  R     + GD LT+LN YK W         S KWCK   I ++   
Sbjct: 898 FYRPREKQKEADQKRSLFLHSQGDHLTLLNVYKSWAL----NGYSSKWCKENYIHDRSLK 953

Query: 725 EVTKLRSQFKQVL 737
              ++R Q   ++
Sbjct: 954 RALEVRKQLVTIM 966



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 76/120 (63%), Gaps = 7/120 (5%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---- 82
           T + I+E + SLPV   K +II+ V + + V+I G+TG GK+TQI QYL ++G+      
Sbjct: 430 TNLSIQEQRESLPVFDMKHDIINAVNENQFVVIVGETGSGKTTQIVQYLSESGYNEINNE 489

Query: 83  ---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
              I CTQPRR+A IS++ RV+ E  S+  + VGY +RF+      T I ++T+G+L ++
Sbjct: 490 HKIIGCTQPRRVAAISVAARVSEEVGSRVGDRVGYTVRFDDKTSPNTDIKYMTDGILEKE 549



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  ++  +   + PEI+R ++   +L L  MG+ D+  F F++ P  +
Sbjct: 773 RTGPGKCYRLYTENAFNNEMLPNTVPEIQRQNLSHTILMLKAMGINDLMGFDFMDPPSTD 832

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            +  +++ L    A+D +  +T LG+ ++D P++  L K L+  S F   D +L +
Sbjct: 833 TMVKALQDLYTLSALDDEGYLTDLGKKMADFPMEPALAKTLIMSSEFGCSDEILTI 888



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 11/99 (11%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPK-----------QVQVAADNFLSSYDVLVLDEIHERH 1137
            EE G R+       V F  K  P            + +   D  +S Y V++LDE HER 
Sbjct: 512  EEVGSRVGDRVGYTVRFDDKTSPNTDIKYMTDGILEKEALYDPIMSRYSVIMLDEAHERT 571

Query: 1138 LHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            +  D L  ++K    S  ++K+I+ SAT++ E F  +FN
Sbjct: 572  IATDVLFALLKKAAKSNPDLKVIVTSATLDAEKFSNFFN 610


>gi|3183525|sp|P45018.2|HRPA_HAEIN RecName: Full=ATP-dependent RNA helicase HrpA homolog
 gi|1574628|gb|AAC22728.1| ATP-dependent helicase (hrpa) [Haemophilus influenzae Rd KW20]
          Length = 1304

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 168/494 (34%), Positives = 266/494 (53%), Gaps = 32/494 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL-HSTAEVKIILMSATINIELFH 367
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL     ++K+I+ SATI++E F 
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFS 245

Query: 368 TYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
            +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD
Sbjct: 246 KHFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGD 296

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++T
Sbjct: 297 ILIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLAT 352

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+  I++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 353 NVAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 412

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ 
Sbjct: 413 IRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERHIQDGVKL 472

Query: 608 LTQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           L + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  ++ + + LS
Sbjct: 473 LEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALS 532

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGI 718
           +Q P      +    +   +       D L  LN ++     +K+  ++  ++ C++  +
Sbjct: 533 IQDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFL 592

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE 778
              R  E   +  Q +  + +  L   I    A       AL  G   LL  I  K+AE 
Sbjct: 593 NYLRIREWQDIYHQIRLTVREMSL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE- 646

Query: 779 APKRRKMLKADNAY 792
              +++ L A NA+
Sbjct: 647 ---KQQYLGARNAH 657



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 406 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERH 465

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  V+ L + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 466 IQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 525

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 526 IIVSALSIQ--DPRER 539



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL-HSTAEVKIILMSATINIELFH 1172
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL     ++K+I+ SATI++E F 
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFS 245

Query: 1173 TYFNRIAKDLLSGST 1187
             +FN      +SG T
Sbjct: 246  KHFNNAPIIEVSGRT 260



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|335042619|ref|ZP_08535646.1| ATP-dependent helicase HrpA [Methylophaga aminisulfidivorans MP]
 gi|333789233|gb|EGL55115.1| ATP-dependent helicase HrpA [Methylophaga aminisulfidivorans MP]
          Length = 1280

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 158/459 (34%), Positives = 249/459 (54%), Gaps = 17/459 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D FL+ YD L++DE HER L+ DFLLG IK LL    ++K+I+ SATI+ E F  
Sbjct: 159 AETQNDRFLNQYDTLIIDEAHERSLNIDFLLGYIKQLLPKRPDLKVIITSATIDTERFSK 218

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRTERG 426
           +F+  A +I+V GR YP+++ Y P++  D       D   Y  +  I+    +  R   G
Sbjct: 219 HFDN-APVIEVSGRTYPVEVRYRPLLTTDE------DSPDYDMVSGIVAGVDELCREGPG 271

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIF++G  +I  +  A ++++       +LPL +  S  EQ+RVF     G R+ I+S
Sbjct: 272 DILIFLAGERDIRDVSEALRKHHPPQTE--ILPLFARQSAAEQNRVFKTG--GQRRIILS 327

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GIR+VVD G  +   Y V  K+  L    IS++SA QR GR GR   G+
Sbjct: 328 TNVAETSLTVPGIRYVVDPGNARISRYSVRNKVQRLPIEKISQSSANQRSGRCGRVAAGI 387

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLY E+ ++    ++ PE+ R ++ S++L +  + LG+  KFPF+  PP + I    R
Sbjct: 388 CIRLYDEDDFNNRPAFTDPEVLRTNLASVILQMSALKLGNPAKFPFINPPPQKMINDGYR 447

Query: 607 SLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFT 666
            L + GA+D +  +T +GR LS LP+D  + +ML+ G+  + +  VL +A+ LS+Q P  
Sbjct: 448 LLDELGAVDKQRNITEVGRQLSKLPIDPKIARMLLAGAEQNSLTEVLIIASALSIQDPRE 507

Query: 667 NRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRFY 724
               +    + A  + +    D +  +  +  +   KK   ++K  K+CK + +   R  
Sbjct: 508 RPMDKQQAADEAHSKYKDERSDFIAFIKLWNHYHDKKKHLSQNKLRKYCKEQFLSFLRLR 567

Query: 725 EVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHG 763
           E   +  Q    L + GL  +    +AS  S  RAL  G
Sbjct: 568 EWHDIHQQLHVQLAELGLKFN--QQEASYDSIHRALLAG 604



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 76/129 (58%), Gaps = 2/129 (1%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLY E+ ++    ++ PE+ R ++ S++L +  + LG+  KFPF+  PP + 
Sbjct: 382 RVAAGICIRLYDEDDFNNRPAFTDPEVLRTNLASVILQMSALKLGNPAKFPFINPPPQKM 441

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           I    R L + GA+D +  +T +GR LS LP+D  + +ML+ G+  + +  +L++  AL+
Sbjct: 442 INDGYRLLDELGAVDKQRNITEVGRQLSKLPIDPKIARMLLAGAEQNSLTEVLIIASALS 501

Query: 929 FGAIDSKER 937
               D +ER
Sbjct: 502 IQ--DPRER 508



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 64/104 (61%), Gaps = 4/104 (3%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV + + E+   +   +V+I+ G+TG GK+TQ+P+  ++ G      I  TQPRRIA  
Sbjct: 55  LPVIERRHEVAKAIQDNQVIILCGETGSGKTTQLPKICLELGRGVTGLIGHTQPRRIAAR 114

Query: 95  SLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLL 137
           +++ R+A E  S+    VGY++RF ++   E + I  +T+G+LL
Sbjct: 115 TVATRIAEELGSEIGQTVGYKVRFHDQVNTESSYIKLMTDGILL 158



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 45/69 (65%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D FL+ YD L++DE HER L+ DFLLG IK LL    ++K+I+ SATI+ E F  +F+  
Sbjct: 164  DRFLNQYDTLIIDEAHERSLNIDFLLGYIKQLLPKRPDLKVIITSATIDTERFSKHFDNA 223

Query: 1179 AKDLLSGST 1187
                +SG T
Sbjct: 224  PVIEVSGRT 232



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            +   D FL+ YD LI+DE HER L  DFLLG I
Sbjct: 159 AETQNDRFLNQYDTLIIDEAHERSLNIDFLLGYI 192



 Score = 40.8 bits (94), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 968  DTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 1027
            D   LLD     GA+D +  +T +GR LS LP+D  + +ML+ G+  + +  +L++  AL
Sbjct: 444  DGYRLLD---ELGAVDKQRNITEVGRQLSKLPIDPKIARMLLAGAEQNSLTEVLIIASAL 500

Query: 1028 NFGAIDSKER 1037
            +    D +ER
Sbjct: 501  SIQ--DPRER 508


>gi|300916253|ref|ZP_07133002.1| ATP-dependent helicase HrpA [Escherichia coli MS 115-1]
 gi|425288246|ref|ZP_18679127.1| ATP-dependent helicase HrpA [Escherichia coli 3006]
 gi|432533629|ref|ZP_19770614.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE234]
 gi|300416435|gb|EFJ99745.1| ATP-dependent helicase HrpA [Escherichia coli MS 115-1]
 gi|408215852|gb|EKI40212.1| ATP-dependent helicase HrpA [Escherichia coli 3006]
 gi|431062008|gb|ELD71295.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE234]
          Length = 1300

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           ++N  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HYNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            ++N      +SG T
Sbjct: 240  HYNNAPIIEVSGRT 253


>gi|420330926|ref|ZP_14832604.1| ATP-dependent helicase HrpA [Shigella flexneri K-1770]
 gi|391255030|gb|EIQ14184.1| ATP-dependent helicase HrpA [Shigella flexneri K-1770]
          Length = 1300

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 163/444 (36%), Positives = 248/444 (55%), Gaps = 23/444 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV-S 486
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF  +  G  +CIV +
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ-SHSG--RCIVLA 347

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+
Sbjct: 348 TNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGI 407

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR
Sbjct: 408 CIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVR 467

Query: 607 SLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+
Sbjct: 468 LLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSI 527

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGI 718
           Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   +
Sbjct: 528 QDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYL 586

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL 742
              R  E   + +Q +QV+ + G+
Sbjct: 587 NYLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|315113911|ref|NP_001186628.1| putative ATP-dependent RNA helicase DHX33 isoform 2 [Homo sapiens]
 gi|119610738|gb|EAW90332.1| DEAH (Asp-Glu-Ala-His) box polypeptide 33, isoform CRA_b [Homo
           sapiens]
 gi|194379138|dbj|BAG58120.1| unnamed protein product [Homo sapiens]
          Length = 534

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 5   EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 64

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 65  LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 112

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 113 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 170

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 171 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 230

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 231 GRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 290

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 291 SPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 350

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 351 TIVSLLSVDSVLHNPPSRREEVQGVRKKFISSEGDHMTLLNIYRTFKNLGGNKD------ 404

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WCK   +  +    V ++R+Q + +
Sbjct: 405 WCKENFVNSKNMTLVAEVRAQLRDI 429



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 235 REDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 294

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 295 IQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 352



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 8    SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFS 67

Query: 1173 TYFN 1176
             YFN
Sbjct: 68   QYFN 71


>gi|432530756|ref|ZP_19767789.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE233]
 gi|431055477|gb|ELD65023.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE233]
          Length = 1300

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           ++N  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HYNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            ++N      +SG T
Sbjct: 240  HYNNAPIIEVSGRT 253


>gi|383316136|ref|YP_005376978.1| ATP-dependent helicase HrpA [Frateuria aurantia DSM 6220]
 gi|379043240|gb|AFC85296.1| ATP-dependent helicase HrpA [Frateuria aurantia DSM 6220]
          Length = 1357

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 155/440 (35%), Positives = 243/440 (55%), Gaps = 14/440 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D +LS YD +++DE HER L+ DFLLG +K L     ++KI++ SATI+   F  
Sbjct: 188 AETQNDPWLSRYDTIIIDEAHERSLNIDFLLGYLKQLARRRPDLKIVITSATIDTARFAE 247

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRT----- 423
           +F+  A ++++ GR YP+++ +  I   D     +L  G    + +++D+   R      
Sbjct: 248 HFD-GAPVVEIEGRTYPVEVRWRGID--DMPGERQLAQGSAEHVAAVMDEISKRRGGGED 304

Query: 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKC 483
             GDVL+F+ G  EI  + R   + N +     +LPL++ LS  +QDR+F   P   R+ 
Sbjct: 305 PLGDVLVFLPGEREIRDVHRLLDQRNYRETE--ILPLYARLSAGDQDRIFR--PGSKRRV 360

Query: 484 IVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543
           +++TN+AETS+T+  IR+V+D+G  +   Y   ++M  L    +S+A+A QRKGR GRTG
Sbjct: 361 VLATNVAETSLTVPRIRYVIDTGVARVKRYSQRSQMERLHVEPVSQAAANQRKGRCGRTG 420

Query: 544 PGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           PGVCYRLYSEE ++    +S PE+ R S+ +++L ++ + LG+V  FPF+EAP    +  
Sbjct: 421 PGVCYRLYSEEDFNARQAFSDPELLRSSLANVILRMLALKLGEVDDFPFIEAPDPRVVSD 480

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
             R L +  AID   R+T +GR L+ LP+D+ L +MLV       +  +L++ A LSVQ 
Sbjct: 481 GYRRLAEISAIDESRRLTPIGRTLARLPIDVQLARMLVEAEQRGCLKAMLAIVAFLSVQD 540

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQ 721
           P    A      + A         D L VLN ++ +    +D  +SK   WC R  +   
Sbjct: 541 PRERPADARQQADAAHAVFADPASDFLGVLNLWQAYEQAHEDLSQSKLRDWCSRHFLSYL 600

Query: 722 RFYEVTKLRSQFKQVLGDSG 741
           R  E  +L  Q   V+ + G
Sbjct: 601 RMREWRELHRQLLSVVRELG 620



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 71/116 (61%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPGVCYRLYSEE ++    +S PE+ R S+ +++L ++ + LG+V  FPF+EAP   
Sbjct: 417 GRTGPGVCYRLYSEEDFNARQAFSDPELLRSSLANVILRMLALKLGEVDDFPFIEAPDPR 476

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            +    R L +  AID   R+T +GR L+ LP+D+ L +MLV       +  ML +
Sbjct: 477 VVSDGYRRLAEISAIDESRRLTPIGRTLARLPIDVQLARMLVEAEQRGCLKAMLAI 532



 Score = 90.5 bits (223), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 75/122 (61%), Gaps = 7/122 (5%)

Query: 19  FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA 78
            +++E+   +M        LP+A +  E++  + + ++V++AG+TG GK+TQ+P+  + A
Sbjct: 70  LRRRERVPAVM----VDAGLPIADHADELVRLIREHQIVVVAGETGSGKTTQLPKLCLMA 125

Query: 79  GFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
           G      I CTQPRR+A  S+++RVA E  +    LVG+Q+RF     E + I F+T+G+
Sbjct: 126 GRGEAGLIGCTQPRRLAARSVAQRVAEELATPLGQLVGFQVRFTDQVSEASLIKFMTDGI 185

Query: 136 LL 137
           LL
Sbjct: 186 LL 187



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            D +LS YD +++DE HER L+ DFLLG +K L     ++KI++ SATI+   F  +F+
Sbjct: 193  DPWLSRYDTIIIDEAHERSLNIDFLLGYLKQLARRRPDLKIVITSATIDTARFAEHFD 250


>gi|325914178|ref|ZP_08176531.1| ATP-dependent helicase HrpA [Xanthomonas vesicatoria ATCC 35937]
 gi|325539681|gb|EGD11324.1| ATP-dependent helicase HrpA [Xanthomonas vesicatoria ATCC 35937]
          Length = 1371

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 157/445 (35%), Positives = 246/445 (55%), Gaps = 36/445 (8%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LL   +++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLKKRSDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPI---------VELDRTKSEKLDPGPYIRILSIIDKK 419
           +F+  A +I V GR +P+++ Y P+          E  R     ++      I++ ID+ 
Sbjct: 240 HFDN-APVINVEGRTFPVEVRYRPLEGESGADDAQEAGRDGERSVNDA----IVAAIDEI 294

Query: 420 YPRTERGDVLIFMSGISEIS----SIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHY 475
                RGDVL+F+ G  EI     S+ R  ++Y E      V+PL++ LS  +QDRVF+ 
Sbjct: 295 TRIDPRGDVLMFLPGEREIRDAHHSLER--RKYRETE----VVPLYARLSAADQDRVFNP 348

Query: 476 APEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQR 535
            P   R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR
Sbjct: 349 GPR--RRLVLATNVAETSLTVPRIRYVVDPGFARVKRYSPRQKLDRLHIEPISQASANQR 406

Query: 536 KGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEA 595
            GR GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEA
Sbjct: 407 MGRCGRIAEGICYRLYAEADFAARPAFTDPEIRRASLSGVILRMLQLGLGRIEDFPFLEA 466

Query: 596 PPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           P    +    + L + GAID + R+T+ GR ++ LPVD+ L +MLV       +  ++ +
Sbjct: 467 PDERAVADGWQQLLELGAIDGERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIVI 526

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDP----LTVLNAYKEWLGVKKDRVRSK- 710
           AA L +Q P      R P+   A     +   D     + +L  ++ +  V +D  +SK 
Sbjct: 527 AAFLGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWEAYRQVHEDLTQSKL 582

Query: 711 -KWCKRRGIEEQRFYEVTKLRSQFK 734
             WC R  +   R  E  +L  Q +
Sbjct: 583 RDWCNRHFLGFLRMREWRELHRQLR 607



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 411 GRIAEGICYRLYAEADFAARPAFTDPEIRRASLSGVILRMLQLGLGRIEDFPFLEAPDER 470

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID + R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 471 AVADGWQQLLELGAIDGERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIV--IAA 528

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 529 FLGIQDPRER 538



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 5/139 (3%)

Query: 2   SPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAG 61
           +P L E ++  L T    +Q           +TQ  LP+A+  + II  +   +VV+IAG
Sbjct: 43  NPQLREAFEQALATSQAQRQTRAEQQPAITLDTQ--LPIARDAERIIGLIRDHQVVVIAG 100

Query: 62  DTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRF 118
           +TG GK+TQ+P+  + AG      I CTQPRRIA  +++ RVA E  +    +VG+Q+RF
Sbjct: 101 ETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIAARAVAARVADELKTPLGTMVGFQVRF 160

Query: 119 EKHRREKTKIVFITEGLLL 137
                E+++I F+T+G+LL
Sbjct: 161 TDRVSEQSRIKFMTDGILL 179



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 47/63 (74%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LL   +++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLKKRSDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 44.7 bits (104), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LS+YD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYL 213



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID + R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 480  LELGAIDGERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIV--IAAFLGIQDPRE 537

Query: 1037 R 1037
            R
Sbjct: 538  R 538



 Score = 40.4 bits (93), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
            L  GAID + R+T+ GR ++ LPVD+ L +MLV       +  M+++
Sbjct: 480  LELGAIDGERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIVI 526


>gi|421728957|ref|ZP_16168107.1| ATP-dependent RNA helicase HrpA [Klebsiella oxytoca M5al]
 gi|410370052|gb|EKP24783.1| ATP-dependent RNA helicase HrpA [Klebsiella oxytoca M5al]
          Length = 1281

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 247/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF  A  G R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ-AHSG-RRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGL 591



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI+D V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQEILDAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|297699788|ref|XP_002826949.1| PREDICTED: putative ATP-dependent RNA helicase DHX33 isoform 1
           [Pongo abelii]
          Length = 766

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 153/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 237 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 296

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 297 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 344

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 345 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 402

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 403 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 462

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 463 GRAGREDSGICYRLYTEEEFEKFDKTTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 522

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 523 SPDHIQAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 582

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 583 TIVSLLSVDSVLHNPPSRREEVQGVRKKFISSEGDHMTLLNIYRTFRNLGGNKD------ 636

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WCK   +  +    V ++R+Q + +
Sbjct: 637 WCKENFVNSKNMMLVAEVRAQLRDI 661



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 130 RRSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 189

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RF+    E T+I F+T+G+LLR+
Sbjct: 190 AAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLRE 237



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 69/119 (57%), Gaps = 3/119 (2%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P  +
Sbjct: 466 GREDSGICYRLYTEEEFEKFDKTTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPD 525

Query: 868 NIESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           +I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 526 HIQAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 584



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 240  SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFS 299

Query: 1173 TYFN 1176
             YFN
Sbjct: 300  QYFN 303


>gi|20336302|ref|NP_064547.2| putative ATP-dependent RNA helicase DHX33 isoform 1 [Homo sapiens]
 gi|296434478|sp|Q9H6R0.2|DHX33_HUMAN RecName: Full=Putative ATP-dependent RNA helicase DHX33; AltName:
           Full=DEAH box protein 33
          Length = 707

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 178 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 237

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 238 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 285

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 286 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 343

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 344 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 403

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 404 GRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 463

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 464 SPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 523

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 524 TIVSLLSVDSVLHNPPSRREEVQGVRKKFISSEGDHMTLLNIYRTFKNLGGNKD------ 577

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WCK   +  +    V ++R+Q + +
Sbjct: 578 WCKENFVNSKNMTLVAEVRAQLRDI 602



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 71  RRSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 130

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RF+    E T+I F+T+G+LLR+
Sbjct: 131 AAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLRE 178



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 408 REDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 467

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 468 IQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 525



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 181  SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFS 240

Query: 1173 TYFN 1176
             YFN
Sbjct: 241  QYFN 244


>gi|429093009|ref|ZP_19155615.1| ATP-dependent helicase hrpA [Cronobacter dublinensis 1210]
 gi|426742057|emb|CCJ81728.1| ATP-dependent helicase hrpA [Cronobacter dublinensis 1210]
          Length = 1300

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 244/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI        + N       VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADGLMKLNLPHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +       ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDAQASVYKLTQLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQASVYKLTQLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    VGY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCVGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|402898443|ref|XP_003912231.1| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase
           DHX33 [Papio anubis]
          Length = 766

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 153/445 (34%), Positives = 257/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K    +  E+     K+I+MSAT++++
Sbjct: 237 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKXRTQTRKELGKLPLKVIVMSATMDVD 296

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 297 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 344

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 345 PPSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPALLVLPLYASLPYAQQLRVFQGA 402

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 403 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 462

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 463 GRAGREDSGICYRLYTEEEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 522

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 523 SPDHIQAALAQLDLLGALEHKDDQLSLTPIGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 582

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 583 TIVSLLSVDSVLHNPPSRREEVQGVRKKFVSSEGDHMTLLNIYRTFKNLGGNKD------ 636

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WCK   +  +    V ++R+Q + +
Sbjct: 637 WCKENFVNSKNMMLVAEVRAQLRDI 661



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 130 RRSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 189

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RF+    + T+I F+T+G+LLR+
Sbjct: 190 AAISLATRVSDEKRTELGKLVGYTVRFDDVTSDDTRIKFLTDGMLLRE 237



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 467 REDSGICYRLYTEEEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 526

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 527 IQAALAQLDLLGALEHKDDQLSLTPIGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 584



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 12/113 (10%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      +E+  E G+      R + + +++   +   D   ++ A +D+ L  Y  +
Sbjct: 191  AISLATRVSDEKRTELGKLVGYTVRFDDVTSDDTRIKFLTDGMLLREAISDSLLRKYSCV 250

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHTYFN 1176
            +LDE HER +H D L GV+K    +  E     +K+I+MSAT++++LF  YFN
Sbjct: 251  ILDEAHERTIHTDVLFGVVKXRTQTRKELGKLPLKVIVMSATMDVDLFSQYFN 303


>gi|325929338|ref|ZP_08190468.1| ATP-dependent helicase HrpA [Xanthomonas perforans 91-118]
 gi|325540250|gb|EGD11862.1| ATP-dependent helicase HrpA [Xanthomonas perforans 91-118]
          Length = 1373

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 248/445 (55%), Gaps = 34/445 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LSSYD +++DE HER L+ DFLLG +K LL   +++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRSDLKLIVTSATIDTERFAR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGP--------YIRILSIIDKKY 420
           +F+  A +I V GR +P+++ Y P+ E D   S+  + G            I++ ID+  
Sbjct: 240 HFDD-APVISVEGRTFPVEVRYRPL-EGDTGDSDDGEHGSGRDGERSVNDAIVAAIDEIT 297

Query: 421 PRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QDRVF+  P 
Sbjct: 298 RIDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDRVFNPGPR 353

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
             R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR GR
Sbjct: 354 --RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMGR 411

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
            GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP  
Sbjct: 412 CGRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDE 471

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
             +    + L + GAID + R+T+ GR ++ LPVD+ L +MLV       +  ++ +AA 
Sbjct: 472 RAVADGWQQLLELGAIDVQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAF 531

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDRVRSK- 710
           L +Q P      R P+   A     +   D        L + +AY++   V +D  +SK 
Sbjct: 532 LGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDLTQSKL 584

Query: 711 -KWCKRRGIEEQRFYEVTKLRSQFK 734
             WC R  +   R  E  +L  Q +
Sbjct: 585 RDWCNRHFLGFLRMREWRELHRQLR 609



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 413 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 472

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID + R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 473 AVADGWQQLLELGAIDVQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 530

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 531 FLGIQDPRER 540



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           + LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  DQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +     VG+Q+RF     ++++I F+T+G+LL
Sbjct: 135 ARAVAARVADELKTPLGTTVGFQVRFTDRVSDQSRIKFMTDGILL 179



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 47/63 (74%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LSSYD +++DE HER L+ DFLLG +K LL   +++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRSDLKLIVTSATIDTERFAR 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LSSYD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYL 213



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID + R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 482  LELGAIDVQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAAFLGIQDPRE 539

Query: 1037 R 1037
            R
Sbjct: 540  R 540


>gi|110805742|ref|YP_689262.1| ATP-dependent RNA helicase HrpA [Shigella flexneri 5 str. 8401]
 gi|424838163|ref|ZP_18262800.1| ATP-dependent RNA helicase HrpA [Shigella flexneri 5a str. M90T]
 gi|110615290|gb|ABF03957.1| helicase, ATP-dependent [Shigella flexneri 5 str. 8401]
 gi|383467215|gb|EID62236.1| ATP-dependent RNA helicase HrpA [Shigella flexneri 5a str. M90T]
          Length = 1251

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 131 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 190

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 191 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 243

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL+  LS  EQ+RVF       R+ +++T
Sbjct: 244 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYVRLSNSEQNRVFQ--SHSGRRIVLAT 299

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 300 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 359

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 360 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 419

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 420 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 479

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 480 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 538

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 539 YLRVREWQDIYTQLRQVVKELGI 561



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 352 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 411

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 412 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 471

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 472 ITSALSIQ--DPRER 484



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 26  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 85

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 86  ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 130



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 131  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 190

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 191  HFNNAPIIEVSGRT 204


>gi|326931216|ref|XP_003211729.1| PREDICTED: putative ATP-dependent RNA helicase DHX33-like
           [Meleagris gallopavo]
          Length = 612

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 254/443 (57%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E   D  L  Y V++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 83  EAIGDPILRKYSVVILDEAHERTIHTDVLFGVVKAAQKKRKELGKLPLKVIVMSATMDVD 142

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
            F  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y++  ++S+  I ++ 
Sbjct: 143 QFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQSD---YLQAALVSVFQIHQEA 190

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +      V+PL+++L   +Q RVF  A
Sbjct: 191 PPSQ--DILVFLTGQEEIEAMTKTCRDIAKHLPDGCPQMTVMPLYASLPYSQQLRVFQAA 248

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+    +  L    +SKA A QR 
Sbjct: 249 PKGCRKVILSTNIAETSITISGIKYVVDTGMVKAKKYNPEIGLEVLAVQRVSKAQAWQRT 308

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S+LL L+ + + ++  F F+  P
Sbjct: 309 GRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVLLQLLALRIPNILTFDFMSKP 368

Query: 597 PAENIESSVRSLTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             + I++++  L   GA++ +E    +T LGR ++  P++    K ++    FH  + +L
Sbjct: 369 SPDAIQAAIEQLDLLGAVERREDQLVLTPLGRKMAAFPLEPKFSKTILLSPKFHCTEEIL 428

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + ++ RK+  S+ GD LT+LN Y+ +  V  +    K+WC
Sbjct: 429 TIVSLLSVDSVLYNPPARRDEVQSVRKKFISSEGDHLTLLNVYRAFKNVSGN----KEWC 484

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    V+ +R+Q + +
Sbjct: 485 KENFVNGRNMMLVSDVRAQLRDI 507



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 60/84 (71%), Gaps = 3/84 (3%)

Query: 62  DTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRF 118
           +TG GK+TQIPQYL +AG  R   IA TQPRR+A ISL+ RV+ E  ++   LVGY +RF
Sbjct: 3   ETGSGKTTQIPQYLYEAGIGRQGIIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRF 62

Query: 119 EKHRREKTKIVFITEGLLLRQDSG 142
           +    ++T+I F+T+G+LLR+  G
Sbjct: 63  DDLTSDETRIKFLTDGMLLREAIG 86



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 68/118 (57%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S+LL L+ + + ++  F F+  P  + 
Sbjct: 313 REDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVLLQLLALRIPNILTFDFMSKPSPDA 372

Query: 869 IESSVRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ +E    +T LGR ++  P++    K ++    FH  + +L +
Sbjct: 373 IQAAIEQLDLLGAVERREDQLVLTPLGRKMAAFPLEPKFSKTILLSPKFHCTEEILTI 430



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 12/113 (10%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      +E+  E G+      R + + ++E   +   D   ++ A  D  L  Y V+
Sbjct: 37   AISLATRVSDEKRTELGKLVGYTVRFDDLTSDETRIKFLTDGMLLREAIGDPILRKYSVV 96

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHTYFN 1176
            +LDE HER +H D L GV+K       E     +K+I+MSAT++++ F  YFN
Sbjct: 97   ILDEAHERTIHTDVLFGVVKAAQKKRKELGKLPLKVIVMSATMDVDQFSQYFN 149


>gi|260580155|ref|ZP_05847985.1| ATP-dependent helicase HrpA [Haemophilus influenzae RdAW]
 gi|260093439|gb|EEW77372.1| ATP-dependent helicase HrpA [Haemophilus influenzae RdAW]
          Length = 1304

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 168/494 (34%), Positives = 266/494 (53%), Gaps = 32/494 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL-HSTAEVKIILMSATINIELFH 367
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL     ++K+I+ SATI++E F 
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFS 245

Query: 368 TYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
            +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD
Sbjct: 246 KHFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGD 296

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++T
Sbjct: 297 ILIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLAT 352

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+  I++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 353 NVAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 412

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ 
Sbjct: 413 IRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERHIQDGVKL 472

Query: 608 LTQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           L + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  ++ + + LS
Sbjct: 473 LEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALS 532

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGI 718
           +Q P      +    +   +       D L  LN ++     +K+  ++  ++ C++  +
Sbjct: 533 IQDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFL 592

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE 778
              R  E   +  Q +  + +  L   I    A       AL  G   LL  I  K+AE 
Sbjct: 593 NYLRIREWQDIYHQIRLTVREMSL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE- 646

Query: 779 APKRRKMLKADNAY 792
              +++ L A NA+
Sbjct: 647 ---KQQYLGARNAH 657



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 406 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERH 465

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  V+ L + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 466 IQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 525

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 526 IIVSALSIQ--DPRER 539



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 82  SLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL-HSTAEVKIILMSATINIELFH 1172
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL     ++K+I+ SATI++E F 
Sbjct: 186  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFS 245

Query: 1173 TYFNRIAKDLLSGST 1187
             +FN      +SG T
Sbjct: 246  KHFNNAPIIEVSGRT 260



 Score = 40.8 bits (94), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219


>gi|224583868|ref|YP_002637666.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224468395|gb|ACN46225.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 1300

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFDN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE  +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEYDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE  +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEYDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 240  HFDNAPIIEVSGRT 253


>gi|417707415|ref|ZP_12356462.1| ATP-dependent helicase HrpA [Shigella flexneri VA-6]
 gi|333004474|gb|EGK24004.1| ATP-dependent helicase HrpA [Shigella flexneri VA-6]
          Length = 1281

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 163/444 (36%), Positives = 248/444 (55%), Gaps = 23/444 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV-S 486
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF  +  G  +CIV +
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ-SHSG--RCIVLA 328

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+
Sbjct: 329 TNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGI 388

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR
Sbjct: 389 CIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVR 448

Query: 607 SLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+
Sbjct: 449 LLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSI 508

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGI 718
           Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   +
Sbjct: 509 QDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYL 567

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL 742
              R  E   + +Q +QV+ + G+
Sbjct: 568 NYLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|420352334|ref|ZP_14853482.1| ATP-dependent helicase HrpA [Shigella boydii 4444-74]
 gi|391283613|gb|EIQ42230.1| ATP-dependent helicase HrpA [Shigella boydii 4444-74]
          Length = 1300

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ S TI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSGTIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ S TI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSGTIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|448508496|ref|XP_003865940.1| hypothetical protein CORT_0A01070 [Candida orthopsilosis Co 90-125]
 gi|380350278|emb|CCG20499.1| hypothetical protein CORT_0A01070 [Candida orthopsilosis Co 90-125]
          Length = 1035

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/444 (34%), Positives = 243/444 (54%), Gaps = 23/444 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E+ ADN LS Y  +++DE HER L+ D LLG+ K LL    ++K+++ SAT+N + F  +
Sbjct: 433 EILADNTLSEYSCIIIDEAHERSLNTDILLGLFKGLLAKRRDLKLVVTSATMNADRFTRF 492

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI-----IDKKYPRTE 424
           F   A    +PGR +P+ + ++  V +D  ++         +ILSI      D +     
Sbjct: 493 FG-AAPQFTIPGRTFPVDIYFNKNVTMDYVET------AVKQILSIHLSKGRDTRGEFVN 545

Query: 425 RGDVLIFMSGISEI---SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR 481
            GD+L+FM+G  +I     ++R   E  E      +LP++ST+  E Q R+F+      R
Sbjct: 546 DGDILVFMTGQEDIEITCDLLREKLEMLENPPPLEILPIYSTMPQELQKRIFNKTSTKKR 605

Query: 482 KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
           K +++TNIAETS+T+DGI++V+D G VK   Y+    M TLQ   IS A+AEQR GRAGR
Sbjct: 606 KVVIATNIAETSLTVDGIKYVIDCGLVKVKVYNPKLGMDTLQVVPISFANAEQRSGRAGR 665

Query: 542 TGPGVCYRLYSEEQYSLLAEYST--PEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 599
           T  GV YRLY+E        Y    PEI+R ++ + +L L  + + D+  FPFL++PP +
Sbjct: 666 TSAGVAYRLYTERATDPQNMYQQPIPEIQRTNLSNTMLLLKSLNVHDINSFPFLDSPPKD 725

Query: 600 NIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGS--MFHQIDTVLSLAA 657
            +  S+  L   GA+D+   +T LGR +   P++  L K+++  +   FH  + +L++ A
Sbjct: 726 LLNCSLYDLWAMGALDNFGELTKLGRDMIQFPIEPTLSKLILLSTERYFHCSEDILTIVA 785

Query: 658 VLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLG----VKKDRVRSKKWC 713
           +LSV + F     R  + ++AR+       D LT+LN Y +W         +  R  +WC
Sbjct: 786 MLSVSNIFQRSKERAKEADSARERFVVAESDHLTLLNVYTQWEANMNKFSNNWNRINEWC 845

Query: 714 KRRGIEEQRFYEVTKLRSQFKQVL 737
            R  I+ +  Y   ++R Q   ++
Sbjct: 846 GRNYIQHKSLYRAREIRKQLAYIM 869



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 78/130 (60%), Gaps = 11/130 (8%)

Query: 18  DFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77
           D +Q   ++ + K R+   SLP    K++++  +   +V II G+TG GK+TQ+ Q+L +
Sbjct: 307 DTEQSSDYTIIQKQRQ---SLPAYAVKEDVVSAIRDNQVTIIIGETGSGKTTQLAQFLYE 363

Query: 78  AGFQR-------IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIV 129
            G          I CTQPRR+A +S++KRV+ E   +    VGY +RF +K   EKT I 
Sbjct: 364 QGLATTKGERKIIGCTQPRRVAAMSVAKRVSEEMQVELGEEVGYSVRFDDKTNPEKTVIK 423

Query: 130 FITEGLLLRQ 139
           ++TEG+LLR+
Sbjct: 424 YMTEGILLRE 433



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 6/136 (4%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTP--EIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
           RT  GV YRLY+E        Y  P  EI+R ++ + +L L  + + D+  FPFL++PP 
Sbjct: 665 RTSAGVAYRLYTERATDPQNMYQQPIPEIQRTNLSNTMLLLKSLNVHDINSFPFLDSPPK 724

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGS--MFHQIDTMLLLD 924
           + +  S+  L   GA+D+   +T LGR +   P++  L K+++  +   FH  + +L + 
Sbjct: 725 DLLNCSLYDLWAMGALDNFGELTKLGRDMIQFPIEPTLSKLILLSTERYFHCSEDILTIV 784

Query: 925 LALNFGAI--DSKERV 938
             L+   I   SKER 
Sbjct: 785 AMLSVSNIFQRSKERA 800



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 22/163 (13%)

Query: 1037 RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEEAGERLE 1096
            + T L +FL +  +    G+  + G       T      A++      EE + E GE + 
Sbjct: 353  KTTQLAQFLYEQGLATTKGERKIIGC------TQPRRVAAMSVAKRVSEEMQVELGEEV- 405

Query: 1097 SMDANEVEFRLKHDPKQV------------QVAADNFLSSYDVLVLDEIHERHLHGDFLL 1144
                  V F  K +P++             ++ ADN LS Y  +++DE HER L+ D LL
Sbjct: 406  ---GYSVRFDDKTNPEKTVIKYMTEGILLREILADNTLSEYSCIIIDEAHERSLNTDILL 462

Query: 1145 GVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGST 1187
            G+ K LL    ++K+++ SAT+N + F  +F    +  + G T
Sbjct: 463  GLFKGLLAKRRDLKLVVTSATMNADRFTRFFGAAPQFTIPGRT 505


>gi|188577414|ref|YP_001914343.1| ATP-dependent helicase HrpA [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521866|gb|ACD59811.1| ATP-dependent helicase HrpA [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 1373

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 157/441 (35%), Positives = 245/441 (55%), Gaps = 26/441 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR-----------ILSIID 417
           +F+  A +I V GR +P+++ Y P+ E D   S   D G +             I++ ID
Sbjct: 240 HFDN-APVINVEGRTFPVEVRYRPL-EGDTGDS---DDGEHSSGRDGERSVNDAIVAAID 294

Query: 418 KKYPRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHY 475
           +      RGDVL+F+ G  EI    +A   ++Y E      V+PL++ LS  +QDRVF+ 
Sbjct: 295 EITRIDPRGDVLMFLPGEREIRDAHQALERRKYRETE----VVPLYARLSAADQDRVFNP 350

Query: 476 APEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQR 535
            P   R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR
Sbjct: 351 GPR--RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQR 408

Query: 536 KGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEA 595
            GR GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEA
Sbjct: 409 MGRCGRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEA 468

Query: 596 PPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           P    +    + L + GAID++ R+T+ G  ++ LPVD+ L +MLV       +  ++ +
Sbjct: 469 PDERAVADGWQQLLELGAIDAQRRLTATGCQMARLPVDVKLARMLVAAQQHGCLREMIII 528

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWC 713
           AA L +Q P    A      + A         + + +L  +  +  V +D  +SK   WC
Sbjct: 529 AAFLGIQDPRERPAEAREAADNAHALFADVRSEFVGILRLWDAYRQVHEDLTQSKLRDWC 588

Query: 714 KRRGIEEQRFYEVTKLRSQFK 734
            R  +   R  E  +L  Q +
Sbjct: 589 NRHFLGFLRMREWRELHRQLR 609



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 413 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 472

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T  G  ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 473 AVADGWQQLLELGAIDAQRRLTATGCQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 530

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 531 FLGIQDPRER 540



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           N LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  NQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +    +VG+Q+RF     E+++I F+T+G+LL
Sbjct: 135 ARAVAARVAEELKTPLGTIVGFQVRFTDRVSEQSRIKFMTDGILL 179



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 48/63 (76%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++A+D +LS+YD +I+DE HER L  DFLLG +   LH
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLH 218


>gi|77164805|ref|YP_343330.1| ATP-dependent helicase HrpA [Nitrosococcus oceani ATCC 19707]
 gi|254433386|ref|ZP_05046894.1| ATP-dependent helicase HrpA [Nitrosococcus oceani AFC27]
 gi|76883119|gb|ABA57800.1| ATP-dependent helicase HrpA [Nitrosococcus oceani ATCC 19707]
 gi|207089719|gb|EDZ66990.1| ATP-dependent helicase HrpA [Nitrosococcus oceani AFC27]
          Length = 1281

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 157/440 (35%), Positives = 242/440 (55%), Gaps = 20/440 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D FL  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 157 AETQGDRFLDQYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIDTERFSQ 216

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F + A II+V GR YP+++ Y P+     T+   L  G    IL  +D+   R   GD+
Sbjct: 217 HFGQ-APIIEVSGRTYPVEIRYRPLCGEQETQERNLSEG----ILDAVDE-LSRLGPGDI 270

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+ G  EI     A ++++       +LPL++ LS  EQ+RVF   P   R+ +++TN
Sbjct: 271 LVFLPGEREIRETAEALRKHHPPHTE--ILPLYARLSSTEQNRVF--KPHSGRRIVLATN 326

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI +VVD G  +   Y V +K+  L    IS++SA QR GR GR   GVC 
Sbjct: 327 VAETSLTVPGIHYVVDPGLARLSRYSVRSKVQRLPIEKISQSSANQRAGRCGRVATGVCI 386

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PE+ R ++ S++L +  + LG V  FPFL+ P  + I   +R L
Sbjct: 387 RLYSEEDFLGRPEFTDPEVLRTNLASVILQMKSLQLGAVEDFPFLDPPLPKMINDGLRLL 446

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GA+D  + +T LG+ L+ LP+D  +G+M++ G  FH +  +L +A+ LS+Q P    
Sbjct: 447 AELGAVDKAQNLTPLGQRLARLPIDPRIGRMVLAGDEFHCLSEMLIIASALSIQDPRE-- 504

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAY-KEWLGVKKDRVR-----SKKWCKRRGIEEQR 722
             R  + + A  E  S   D  +   +Y K W  + + R R      + +C+   +   R
Sbjct: 505 --RPLEAQQAADEAHSRFQDERSDFLSYLKLWEDLHRQRARLSQNKLRAYCREHFLSYLR 562

Query: 723 FYEVTKLRSQFKQVLGDSGL 742
             E   +  Q K +  + G 
Sbjct: 563 LREWRDIHQQLKLLATNIGF 582



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 78/130 (60%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLYSEE +    E++ PE+ R ++ S++L +  + LG V  FPFL+ P  +
Sbjct: 378 GRVATGVCIRLYSEEDFLGRPEFTDPEVLRTNLASVILQMKSLQLGAVEDFPFLDPPLPK 437

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I   +R L + GA+D  + +T LG+ L+ LP+D  +G+M++ G  FH +  ML++  AL
Sbjct: 438 MINDGLRLLAELGAVDKAQNLTPLGQRLARLPIDPRIGRMVLAGDEFHCLSEMLIIASAL 497

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 498 SIQ--DPRER 505



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 3/111 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRI 91
           + SLPV + ++EI   +   +VVI+ G+TG GK+TQ+P+  ++ G      I  TQPRRI
Sbjct: 51  EQSLPVIERREEIGAAIRNHQVVILCGETGSGKTTQLPKICLELGRGVAGMIGHTQPRRI 110

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
           A  +++ R+A E  S    +VGY++RF       T I  +T+G+LL +  G
Sbjct: 111 AARTVANRIAKELNSDLGQIVGYKVRFHDQVSPSTYIKLMTDGILLAETQG 161



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D FL  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 157  AETQGDRFLDQYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIDTERFSQ 216

Query: 1174 YFNRIAKDLLSGST 1187
            +F +     +SG T
Sbjct: 217  HFGQAPIIEVSGRT 230



 Score = 49.7 bits (117), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 15/114 (13%)

Query: 925  LALNFGAIDSKERVTSLGRFLSDLP-VDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAID 983
            L  N  ++  + +   LG  + D P +D PL KM+  G           L L    GA+D
Sbjct: 406  LRTNLASVILQMKSLQLG-AVEDFPFLDPPLPKMINDG-----------LRLLAELGAVD 453

Query: 984  SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKER 1037
              + +T LG+ L+ LP+D  +G+M++ G  FH +  ML++  AL+    D +ER
Sbjct: 454  KAQNLTPLGQRLARLPIDPRIGRMVLAGDEFHCLSEMLIIASALSIQ--DPRER 505



 Score = 48.5 bits (114), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 13/106 (12%)

Query: 975  LALNFGAIDSKERVTSLGRFLSDLP-VDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAID 1033
            L  N  ++  + +   LG  + D P +D PL KM+  G           L L    GA+D
Sbjct: 406  LRTNLASVILQMKSLQLG-AVEDFPFLDPPLPKMINDG-----------LRLLAELGAVD 453

Query: 1034 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNF 1079
              + +T LG+ L+ LP+D  +G+M++ G  FH +  ML++  AL+ 
Sbjct: 454  KAQNLTPLGQRLARLPIDPRIGRMVLAGDEFHCLSEMLIIASALSI 499


>gi|355568140|gb|EHH24421.1| hypothetical protein EGK_08077 [Macaca mulatta]
          Length = 659

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 249/443 (56%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 101 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVD 160

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD--PGPYIRILSIIDKKYPR 422
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D      + +  I  +  P 
Sbjct: 161 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQNDYLHAALVSVFQIHQEAPPS 211

Query: 423 TERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  AP+
Sbjct: 212 Q---DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPALLVLPLYASLPYAQQLRVFQGAPK 268

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
           G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR GR
Sbjct: 269 GYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRTGR 328

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
           AGR   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P  
Sbjct: 329 AGREDSGICYRLYTEEEFEKFDKMTMPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSP 388

Query: 599 ENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L++
Sbjct: 389 DHIQAAIAQLDLLGALEHKDDQLSLTPIGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 448

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKKWC 713
            ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      WC
Sbjct: 449 VSLLSVDSVLHNPPSRREEVQGVRKKFVSSEGDHMTLLNIYRTFKNLGGNKD------WC 502

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    V ++R+Q + +
Sbjct: 503 KENFVNSKNMMLVAEVRAQLRDI 525



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 57/81 (70%), Gaps = 3/81 (3%)

Query: 62  DTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRF 118
           +TG GK+TQIPQYL + G  R   IA TQPRR+A ISL+ RV+ E  ++   LVGY +RF
Sbjct: 21  ETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRF 80

Query: 119 EKHRREKTKIVFITEGLLLRQ 139
           +    E T+I F+T+G+LLR+
Sbjct: 81  DDVTSEDTRIKFLTDGMLLRE 101



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 331 REDSGICYRLYTEEEFEKFDKMTMPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 390

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 391 IQAAIAQLDLLGALEHKDDQLSLTPIGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 448



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 104  SDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVDLFS 163

Query: 1173 TYFN 1176
             YFN
Sbjct: 164  QYFN 167


>gi|345001059|ref|YP_004803913.1| ATP-dependent helicase HrpA [Streptomyces sp. SirexAA-E]
 gi|344316685|gb|AEN11373.1| ATP-dependent helicase HrpA [Streptomyces sp. SirexAA-E]
          Length = 1306

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 158/455 (34%), Positives = 250/455 (54%), Gaps = 17/455 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 177 AEIQTDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPERPDLKVVVTSATIDPERFAK 236

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A I++V GR YP+++ Y P++E D + +++         +  +  + P    GDV
Sbjct: 237 HFGE-APIVEVSGRTYPVEVRYRPLLEEDSSDADRDQITAICDAVDELGHEAP----GDV 291

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG  EI     A  + N ++    VLPL++ LS  EQ RVF       R+ +++TN
Sbjct: 292 LVFLSGEREIRDTADALNKRNLRNTE--VLPLYARLSHAEQHRVFQR--HTGRRIVLATN 347

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GRT  G+C 
Sbjct: 348 VAETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICI 407

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ +    E++ PEI R ++ S++L +   GLGD+ KFPF++ P   NI   V+ L
Sbjct: 408 RLYSEDDFLTRPEFTDPEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLL 467

Query: 609 TQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GA+D +E     R+T LGR LS LPVD  L +M+V       +  V+ +AA LS+Q 
Sbjct: 468 QELGALDPQEKDPRKRLTPLGRKLSQLPVDPRLARMVVEADRNGCVREVMVIAAALSIQD 527

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQ 721
           P    A +    +      +    D L  LN ++     +K+R  S  ++ CK+  +   
Sbjct: 528 PRERPAEKQTQADQHHARFKDETSDFLAYLNLWRYVREQQKERGSSSFRRMCKQEYLNFL 587

Query: 722 RFYEVTKLRSQFKQVLGDSGL-ITDIPGPDASLSS 755
           R  E   + +Q + V    G+ + D   P+ S+ +
Sbjct: 588 RIREWQDIYAQLRSVARQMGIQLNDEDAPEQSVHT 622



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 79/135 (58%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSE+ +    E++ PEI R ++ S++L +   GLGD+ KFPF++ P   
Sbjct: 399 GRTSDGICIRLYSEDDFLTRPEFTDPEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHR 458

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI   V+ L + GA+D +E     R+T LGR LS LPVD  L +M+V       +  +++
Sbjct: 459 NIRDGVQLLQELGALDPQEKDPRKRLTPLGRKLSQLPVDPRLARMVVEADRNGCVREVMV 518

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 519 IAAALSIQ--DPRER 531



 Score = 77.4 bits (189), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 68/104 (65%), Gaps = 4/104 (3%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K EI++ +   +VVI+AG+TG GK+TQIP+  ++ G      I  TQPRRIA  
Sbjct: 73  LPVSQKKDEILEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGMIGHTQPRRIAAR 132

Query: 95  SLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLL 137
           ++++RVA E  +     VG+++RF ++   + T +  +T+G+LL
Sbjct: 133 TVAERVADELKTPLGEAVGWKVRFTDQVNPDATFVKLMTDGILL 176



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 177  AEIQTDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPERPDLKVVVTSATIDPERFAK 236

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 237  HFGEAPIVEVSGRT 250


>gi|444377444|ref|ZP_21176675.1| ATP-dependent helicase HrpA [Enterovibrio sp. AK16]
 gi|443678525|gb|ELT85194.1| ATP-dependent helicase HrpA [Enterovibrio sp. AK16]
          Length = 1313

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 154/443 (34%), Positives = 245/443 (55%), Gaps = 20/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 194 AEIQHDRFLNQYDCIIIDEAHERSLNIDFILGYLKQLLPKRPDLKLIITSATIDPERFSN 253

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F R A II+V GR YP+++ Y P+VE     SE  D      I   +D+ +     GD+
Sbjct: 254 HF-RGAPIIEVSGRTYPVEVRYRPLVE----DSEDTDRDQLQAIFDAVDELHDEGP-GDI 307

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++TN
Sbjct: 308 LIFMNGEREIRDTADALNKRNLRDCE--ILPLYARLSSAEQNRVFQ--SHSGRRIVLATN 363

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 364 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSDGICI 423

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF++ P + NI   VR L
Sbjct: 424 RLYSEEDFLSRPEFTDPEILRTNLASVILQMTAIGLGDISAFPFVQPPDSRNISDGVRLL 483

Query: 609 TQHGAI------DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
            + GA+      D  +R+T  GR L+ LP+D  L +M++  +    +  V+ +A+ LS+Q
Sbjct: 484 EELGALKEGKKGDDHKRLTETGRNLARLPIDPRLARMVLESARLGSLHEVMVIASALSIQ 543

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   +       D L  +N + E++  ++  +     +K CK+  + 
Sbjct: 544 DPRERPSDKQQQSDEKHRRFNDKESDFLAYVNLW-EYIKEQQKELSGNQFRKQCKKDYLN 602

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   +  Q +QV+ + G 
Sbjct: 603 YLRVREWQDVHYQIRQVVNELGF 625



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 8/136 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF++ P + 
Sbjct: 415 GRVSDGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTAIGLGDISAFPFVQPPDSR 474

Query: 868 NIESSVRSLTQHGAI------DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           NI   VR L + GA+      D  +R+T  GR L+ LP+D  L +M++  +    +  ++
Sbjct: 475 NISDGVRLLEELGALKEGKKGDDHKRLTETGRNLARLPIDPRLARMVLESARLGSLHEVM 534

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 535 VIASALSIQ--DPRER 548



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
            LPV+Q K +I + +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 90  QLPVSQKKDDIAEAIANNQVVIVAGETGSGKTTQLPKICMELGLGVSGVIGHTQPRRLAA 149

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++    VGY++RF     E++++  +T+G+LL
Sbjct: 150 RSVATRIAEELETELGKTVGYKVRFNDQVSEESRVKLMTDGILL 193



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 194  AEIQHDRFLNQYDCIIIDEAHERSLNIDFILGYLKQLLPKRPDLKLIITSATIDPERFSN 253

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 254  HFRGAPIIEVSGRT 267



 Score = 40.0 bits (92), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 194 AEIQHDRFLNQYDCIIIDEAHERSLNIDFILGYL 227


>gi|416837724|ref|ZP_11902416.1| ATP-dependent RNA helicase HrpA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|320663839|gb|EFX31067.1| ATP-dependent RNA helicase HrpA [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 1300

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM G  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMGGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|432946889|ref|ZP_20142411.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE196]
 gi|433042970|ref|ZP_20230483.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE117]
 gi|431459776|gb|ELH40067.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE196]
 gi|431557944|gb|ELI31627.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE117]
          Length = 1300

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  +Q+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSDQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVGEWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|381169795|ref|ZP_09878958.1| ATP-dependent helicase HrpA [Xanthomonas citri pv.
           mangiferaeindicae LMG 941]
 gi|380689813|emb|CCG35445.1| ATP-dependent helicase HrpA [Xanthomonas citri pv.
           mangiferaeindicae LMG 941]
          Length = 1373

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 157/448 (35%), Positives = 246/448 (54%), Gaps = 40/448 (8%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LSSYD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPI-----------VELDRTKSEKLDPGPYIRILSIID 417
           +F+  A +I V GR +P+++ Y P+               R     ++      I++ ID
Sbjct: 240 HFDN-APVISVEGRTFPVEVRYRPLEGDTGDGDDGEHGSGRDGERSVNDA----IVAAID 294

Query: 418 KKYPRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHY 475
           +      RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QDRVF+ 
Sbjct: 295 EITRIDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDRVFNP 350

Query: 476 APEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQR 535
            P   R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR
Sbjct: 351 GPR--RRLVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQR 408

Query: 536 KGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEA 595
            GR GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEA
Sbjct: 409 MGRCGRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEA 468

Query: 596 PPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           P    +    + L + GAID++ R+T+ GR ++ LPVD+ L +MLV       +  ++ +
Sbjct: 469 PDERAVADGWQQLLELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIII 528

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDRVR 708
           A  L +Q P      R P+   A     +   D        L + +AY++   V +D  +
Sbjct: 529 AVFLGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDLTQ 581

Query: 709 SK--KWCKRRGIEEQRFYEVTKLRSQFK 734
           SK   WC R  +   R  E  +L  Q +
Sbjct: 582 SKLRDWCNRHFLGFLRMREWRELHRQLR 609



 Score =  100 bits (248), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 77/130 (59%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 413 GRIAEGICYRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDER 472

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T  GR ++ LPVD+ L +MLV       +  M++  +A+
Sbjct: 473 AVADGWQQLLELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAV 530

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 531 FLGIQDPRER 540



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 48/63 (76%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LSSYD +++DE HER L+ DFLLG +K LLH  +++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           + LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  DQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +     VG+Q+RF     ++++I F+T+G+LL
Sbjct: 135 ARAVAARVADELKTPLGTTVGFQVRFTDRVSDQSRIKFMTDGILL 179



 Score = 47.8 bits (112), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 28/39 (71%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++A+D +LSSYD +I+DE HER L  DFLLG +   LH
Sbjct: 180 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLH 218



 Score = 45.1 bits (105), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M++  +A+  G  D +E
Sbjct: 482  LELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAVFLGIQDPRE 539

Query: 1037 R 1037
            R
Sbjct: 540  R 540



 Score = 42.4 bits (98), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEE- 1085
            L  GAID++ R+T+ GR ++ LPVD+ L +MLV       +  M+++ + L      E  
Sbjct: 482  LELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAVFLGIQDPRERP 541

Query: 1086 EEEEEAGERLESMDAN 1101
             E  EA +   ++ A+
Sbjct: 542  PEAREAADNAHALFAD 557


>gi|170768297|ref|ZP_02902750.1| ATP-dependent helicase HrpA [Escherichia albertii TW07627]
 gi|170123063|gb|EDS91994.1| ATP-dependent helicase HrpA [Escherichia albertii TW07627]
          Length = 1281

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/445 (35%), Positives = 247/445 (55%), Gaps = 25/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIID--KKYPRTER 425
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L         +I D  ++  +   
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ--------AIFDAVEELSQESP 271

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GD+LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ ++
Sbjct: 272 GDILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVL 327

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G
Sbjct: 328 ATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEG 387

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 388 ICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGV 447

Query: 606 RSLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           R L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS
Sbjct: 448 RLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALS 507

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   
Sbjct: 508 IQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDY 566

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + G+
Sbjct: 567 LNYLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I+D V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILDAVRDNQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  E T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 160



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|261343810|ref|ZP_05971455.1| ATP-dependent helicase HrpA [Providencia rustigianii DSM 4541]
 gi|282568194|gb|EFB73729.1| ATP-dependent helicase HrpA [Providencia rustigianii DSM 4541]
          Length = 1299

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 167/481 (34%), Positives = 261/481 (54%), Gaps = 29/481 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176 AELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSR 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRTERG 426
           +F   A I++V GR YP+++ Y PI+  D   SE+       +I  IID   +  R   G
Sbjct: 236 HFGH-APIVEVSGRTYPVEVRYRPIMG-DDNDSER------DQIDGIIDAVNELGRESPG 287

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFMSG  EI     A  +   +     +LPL + LS  EQ+R+FH  P G R+ I++
Sbjct: 288 DILIFMSGEREIRDTADALTKLQLRHTE--ILPLFARLSNSEQNRIFH--PHGGRRIILA 343

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D+G  +   Y    K+  L    IS+ASA QRKGR GR   G+
Sbjct: 344 TNVAETSLTVPGIKYVIDTGYARISRYSYRTKVQRLPVEAISQASANQRKGRCGRVSDGI 403

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V+
Sbjct: 404 CIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTSIGLGDIAAFPFVEAPDKRNIQDGVK 463

Query: 607 SLTQHGAI------DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            L + G I      D   R+T +GR L+ LPVD  L +M++    +  +   + + + LS
Sbjct: 464 LLEELGGIQPHKEADKGYRLTDVGRQLAQLPVDPRLARMVIEARKYGAVRETMVIVSALS 523

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D +  LN + ++L  ++  + +   +K C++  
Sbjct: 524 IQDPRERPLDKQQAADEKHRRFHDKQSDFMAFLNLW-DYLKEQQKALSNAQFRKMCRQDF 582

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   L +Q +QV+ + G+   I   +A   S   +L  G   LL  I +K AE
Sbjct: 583 LNYLRIREWQDLYTQLRQVVKEQGIA--INSVEADFRSIHVSLLAG---LLSHIGQKDAE 637

Query: 778 E 778
           +
Sbjct: 638 K 638



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 8/136 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 397 GRVSDGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTSIGLGDIAAFPFVEAPDKR 456

Query: 868 NIESSVRSLTQHGAI------DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           NI+  V+ L + G I      D   R+T +GR L+ LPVD  L +M++    +  +   +
Sbjct: 457 NIQDGVKLLEELGGIQPHKEADKGYRLTDVGRQLAQLPVDPRLARMVIEARKYGAVRETM 516

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 517 VIVSALSIQ--DPRER 530



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 7/107 (6%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ-----AGFQRIACTQPRR 90
           ++LPV+Q KQ I++ +   +VVIIAG+TG GK+TQIP+  ++      GF  I  TQPRR
Sbjct: 71  DNLPVSQKKQVILEAIQHHQVVIIAGETGSGKTTQIPKICLELGRGIKGF--IGHTQPRR 128

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  S++ R+A E   +    VGY++RF     E T++  +T+G+LL
Sbjct: 129 LAARSVASRLAQELECELGTNVGYKVRFSDQVGETTQVKLMTDGILL 175



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176  AELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSR 235

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 236  HFGHAPIVEVSGRT 249


>gi|254566235|ref|XP_002490228.1| DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase
           [Komagataella pastoris GS115]
 gi|238030024|emb|CAY67947.1| DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase
           [Komagataella pastoris GS115]
 gi|328350623|emb|CCA37023.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
           [Komagataella pastoris CBS 7435]
          Length = 1005

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 161/442 (36%), Positives = 243/442 (54%), Gaps = 30/442 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  LS Y V++LDE HER +  D L  ++K       ++KII+ SAT++   F TY
Sbjct: 456 EAMVDKMLSKYSVIMLDEAHERTIATDVLFVLLKTAAMKRDDLKIIVTSATLDSGKFSTY 515

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F     II++PGR +P+++ Y    ELD  ++           L  +   +    RGD+L
Sbjct: 516 FENCP-IIQIPGRTFPVEIFYTKEPELDYLQA----------TLECVLSIHKNESRGDIL 564

Query: 430 IFMSGISEISSIVRAAQEYN---EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           +F++G  EI +      E      +    I+LP++S+L  E Q ++F   P G RK I++
Sbjct: 565 VFLTGQEEIDTCCEVLYEKLIDLHQENELIILPIYSSLPSEMQSKIFEPTPVGKRKVIIA 624

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TNIAETSITIDGI +V+D G VK  +YD    M +L    IS+A A+QR GRAGRTGPG 
Sbjct: 625 TNIAETSITIDGIYYVIDPGFVKVNAYDPKLGMDSLMVTPISQAQAKQRAGRAGRTGPGK 684

Query: 547 CYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           C+RLY+E  Y+  +   S PEI+R ++   +L L  MG+ D+  F F++ PP + + S++
Sbjct: 685 CFRLYTETGYNKEMLPNSIPEIQRQNLAHTILMLKAMGVQDLIGFEFMDPPPLKTMLSAL 744

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
             L    A+     +T LGR ++D P+D  L K+L+    F   + +LS+ ++LSVQS F
Sbjct: 745 EELYNLEALTEDGDLTELGRRMADFPMDPGLAKVLIKSIEFGCSEEMLSIVSMLSVQSIF 804

Query: 666 TNRAFRDPDCETARKELESN------HGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIE 719
               +R P  E  +K  E        HGD +T+LN Y++W+        SK+WCK   I 
Sbjct: 805 ----YR-PTGELRKKADEKRVRFNHPHGDHMTMLNVYEKWV----RNGSSKEWCKDNFIH 855

Query: 720 EQRFYEVTKLRSQFKQVLGDSG 741
            +    V  +R+Q K+++   G
Sbjct: 856 YRSLLRVRDVRTQLKKIMNKYG 877



 Score =  107 bits (268), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 86/138 (62%), Gaps = 13/138 (9%)

Query: 8   EWKLLLRTYLDFKQKEKF--STLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGC 65
           EWK       D  +K+ +  +T   ++E + SLPV   KQ +++TV   + V+I G+TG 
Sbjct: 326 EWK-------DSIKKDSYGKTTTKNLQEQRESLPVFSMKQMLLETVKNNKFVVIVGETGS 378

Query: 66  GKSTQIPQYLVQAGFQR----IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKH 121
           GK+TQI QYL + GF +    I CTQPRR+A +S++KRV+ E   +    VGY IRFE +
Sbjct: 379 GKTTQITQYLAEEGFNKGNMIIGCTQPRRVAAVSVAKRVSEEVGCRLGQEVGYTIRFEDN 438

Query: 122 RREKTKIVFITEGLLLRQ 139
             + TKI ++T+G+L R+
Sbjct: 439 TSDVTKIKYMTDGMLQRE 456



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG C+RLY+E  Y+  +   S PEI+R ++   +L L  MG+ D+  F F++ PP +
Sbjct: 679 RTGPGKCFRLYTETGYNKEMLPNSIPEIQRQNLAHTILMLKAMGVQDLIGFEFMDPPPLK 738

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            + S++  L    A+     +T LGR ++D P+D  L K+L+    F   + ML +   L
Sbjct: 739 TMLSALEELYNLEALTEDGDLTELGRRMADFPMDPGLAKVLIKSIEFGCSEEMLSIVSML 798

Query: 928 NFGAI 932
           +  +I
Sbjct: 799 SVQSI 803



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q +   D  LS Y V++LDE HER +  D L  ++K       ++KII+ SAT++   F 
Sbjct: 454  QREAMVDKMLSKYSVIMLDEAHERTIATDVLFVLLKTAAMKRDDLKIIVTSATLDSGKFS 513

Query: 1173 TYF 1175
            TYF
Sbjct: 514  TYF 516


>gi|432607279|ref|ZP_19843469.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE67]
 gi|431138961|gb|ELE40765.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE67]
          Length = 1300

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI        + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADVLNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|161350021|ref|NP_439228.2| ATP-dependent RNA helicase HrpA [Haemophilus influenzae Rd KW20]
          Length = 1280

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 168/494 (34%), Positives = 266/494 (53%), Gaps = 32/494 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL-HSTAEVKIILMSATINIELFH 367
            E+  D FL+ Y  L++DE HER L+ DF+LG +K LL     ++K+I+ SATI++E F 
Sbjct: 162 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFS 221

Query: 368 TYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
            +FN  A II+V GR YP+++ Y P+VE D       D      IL+ +D+      RGD
Sbjct: 222 KHFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGD 272

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A Q+ N K     +LPL + LS +EQ+++FH  P GL + +++T
Sbjct: 273 ILIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLAT 328

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+  I++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 329 NVAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 388

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  V+ 
Sbjct: 389 IRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERHIQDGVKL 448

Query: 608 LTQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           L + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  ++ + + LS
Sbjct: 449 LEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALS 508

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGI 718
           +Q P      +    +   +       D L  LN ++     +K+  ++  ++ C++  +
Sbjct: 509 IQDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFL 568

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE 778
              R  E   +  Q +  + +  L   I    A       AL  G   LL  I  K+AE 
Sbjct: 569 NYLRIREWQDIYHQIRLTVREMSL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE- 622

Query: 779 APKRRKMLKADNAY 792
              +++ L A NA+
Sbjct: 623 ---KQQYLGARNAH 633



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 382 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERH 441

Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  V+ L + GA ++       K  +T +GR L+ LPVD  L KM++    F  +  M+
Sbjct: 442 IQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 501

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 502 IIVSALSIQ--DPRER 515



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
           SLPV+Q K EI   + + +V+++AG+TG GK+TQ+P+  ++ GF     I  TQPRRIA 
Sbjct: 58  SLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 117

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  ++   LVGY++RF     + T+I  +T+G+LL
Sbjct: 118 RSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILL 161



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL-HSTAEVKIILMSATINIELFH 1172
             ++  D FL+ Y  L++DE HER L+ DF+LG +K LL     ++K+I+ SATI++E F 
Sbjct: 162  AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFS 221

Query: 1173 TYFNRIAKDLLSGST 1187
             +FN      +SG T
Sbjct: 222  KHFNNAPIIEVSGRT 236



 Score = 40.8 bits (94), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ Y  LI+DE HER L  DF+LG +
Sbjct: 162 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 195


>gi|432861360|ref|ZP_20086319.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE146]
 gi|431406154|gb|ELG89383.1| ATP-dependent RNA helicase hrpA [Escherichia coli KTE146]
          Length = 1300

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIF+SG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFLSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHTGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|82544160|ref|YP_408107.1| ATP-dependent RNA helicase HrpA [Shigella boydii Sb227]
 gi|81245571|gb|ABB66279.1| helicase, ATP-dependent [Shigella boydii Sb227]
          Length = 1281

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ S TI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSGTIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ S TI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSGTIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|333984914|ref|YP_004514124.1| ATP-dependent helicase HrpA [Methylomonas methanica MC09]
 gi|333808955|gb|AEG01625.1| ATP-dependent helicase HrpA [Methylomonas methanica MC09]
          Length = 1296

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 160/442 (36%), Positives = 248/442 (56%), Gaps = 15/442 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D +L+ YD +++DE HER L+ DFL+G ++ LL   +++K+++ SATI+ E F  
Sbjct: 178 AESQNDPYLNQYDTIIIDEAHERSLNIDFLMGYLRWLLPKRSDLKVVITSATIDPERFAK 237

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPI--VELDRTKSEKLDPGPYIRILSIIDKKYPRTERG 426
           +FN  A I+ V GR YP+ + Y PI  +E D   S  L       IL  +D+ Y R  RG
Sbjct: 238 HFNN-APIVNVSGRTYPVDVRYRPIELIEEDDETSADLQQA----ILDAVDELY-RDLRG 291

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR-KCIV 485
           D+LIF+SG  EI     + ++ +   + + VLPL+S LS+ EQ+RVF   P G + + ++
Sbjct: 292 DILIFLSGEHEIRETTESLRKSHNNGR-YEVLPLYSKLSVAEQERVF--KPAGNKPRIVL 348

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GIR V+DSG  +   Y V +K+  L    IS+ASA QR GR GR   G
Sbjct: 349 ATNVAETSLTVPGIRCVIDSGHARISRYSVRSKIQRLPIERISQASANQRAGRCGRVAEG 408

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYS+E Y    E++ PEI R ++ S++L +  + LGD+  FPF+E P  + I    
Sbjct: 409 ICIRLYSKEDYLARPEFTDPEILRTNLSSVILQMAALKLGDIEDFPFVEPPEDKMIRDGK 468

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
            +L +  A+D + ++T  GR L+ +P D  L +ML+  +    +  V  + + LS+Q P 
Sbjct: 469 NALFEVDALDKQGQLTDTGRQLAKIPTDPKLARMLLAAAELGSLHEVAIIVSALSIQDPR 528

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRF 723
              A +    E    + ++   D LT+LN +  +   KK    +K  K+C+   +   R 
Sbjct: 529 DKPADKLHLAEAKHAQFKAEDSDFLTLLNLWNAFEEQKKHLTNNKLRKYCQDNFLSYIRM 588

Query: 724 YEVTKLRSQFKQVL-GDSGLIT 744
            E   + +Q  QV  GD  L T
Sbjct: 589 REWHDIHTQIMQVARGDLRLKT 610



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 61/105 (58%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYS+E Y    E++ PEI R ++ S++L +  + LGD+  FPF+E P  +
Sbjct: 403 GRVAEGICIRLYSKEDYLARPEFTDPEILRTNLSSVILQMAALKLGDIEDFPFVEPPEDK 462

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGS 912
            I     +L +  A+D + ++T  GR L+ +P D  L +ML+  +
Sbjct: 463 MIRDGKNALFEVDALDKQGQLTDTGRQLAKIPTDPKLARMLLAAA 507



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACI 94
           LPV+  K EI + +   +V I+ G+TG GK+TQ+P+  ++ G      I  TQPRRIA  
Sbjct: 75  LPVSGKKDEIAELIKHNQVSIVCGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRIAAR 134

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ R+A E        VGY++RF       + +  +T+G+LL
Sbjct: 135 TVADRIAEELGQPIGQAVGYKVRFHDQTHPNSLVKLMTDGILL 177



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 46/69 (66%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D +L+ YD +++DE HER L+ DFL+G ++ LL   +++K+++ SATI+ E F  +FN  
Sbjct: 183  DPYLNQYDTIIIDEAHERSLNIDFLMGYLRWLLPKRSDLKVVITSATIDPERFAKHFNNA 242

Query: 1179 AKDLLSGST 1187
                +SG T
Sbjct: 243  PIVNVSGRT 251


>gi|119610740|gb|EAW90334.1| DEAH (Asp-Glu-Ala-His) box polypeptide 33, isoform CRA_d [Homo
           sapiens]
          Length = 766

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 237 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 296

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 297 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 344

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 345 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 402

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 403 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 462

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 463 GRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 522

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 523 SPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 582

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 583 TIVSLLSVDSVLHNPPSRREEVQGVRKKFISSEGDHMTLLNIYRTFKNLGGNKD------ 636

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WCK   +  +    V ++R+Q + +
Sbjct: 637 WCKENFVNSKNMTLVAEVRAQLRDI 661



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 130 RRSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 189

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RF+    E T+I F+T+G+LLR+
Sbjct: 190 AAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLRE 237



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 69/119 (57%), Gaps = 3/119 (2%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  +
Sbjct: 466 GREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPD 525

Query: 868 NIESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           +I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 526 HIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 584



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 240  SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFS 299

Query: 1173 TYFN 1176
             YFN
Sbjct: 300  QYFN 303


>gi|365970397|ref|YP_004951958.1| ATP-dependent RNA helicase hrpA [Enterobacter cloacae EcWSU1]
 gi|365749310|gb|AEW73537.1| ATP-dependent RNA helicase hrpA [Enterobacter cloacae EcWSU1]
          Length = 1300

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+       GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGNESAGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIF+SG  EI     A  + + +     +LPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFLSGEREIRDTADALSKRDLRHTE--ILPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I+D V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILDAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  +Q    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTQPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|194381268|dbj|BAG58588.1| unnamed protein product [Homo sapiens]
          Length = 766

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 237 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 296

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 297 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 344

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 345 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 402

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 403 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 462

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 463 GRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 522

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 523 SPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILISPKFHCTEEIL 582

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 583 TIVSLLSVDSVLHNPPSRREEVQGVRKKFISSEGDHMTLLNIYRTFKNLGGNKD------ 636

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WCK   +  +    V ++R+Q + +
Sbjct: 637 WCKENFVNSKNMTLVAEVRAQLRDI 661



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 130 RRSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 189

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RF+    E T+I F+T+G+LLR+
Sbjct: 190 AAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLRE 237



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 69/119 (57%), Gaps = 3/119 (2%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  +
Sbjct: 466 GREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPD 525

Query: 868 NIESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           +I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 526 HIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILISPKFHCTEEILTI 584



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 240  SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFS 299

Query: 1173 TYFN 1176
             YFN
Sbjct: 300  QYFN 303


>gi|7630057|emb|CAB88265.1| pre-mRNA splicing factor ATP-dependent RNA helicase-like protein
            [Arabidopsis thaliana]
          Length = 1226

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 154/450 (34%), Positives = 248/450 (55%), Gaps = 24/450 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D+ L  Y V+V+DE HER L+ D L G++K ++    + K+I+ SAT+N + F  +
Sbjct: 633  ETLKDSDLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSNF 692

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F  +  I  +PGR +P+ + Y       +T  E        + ++I     P    GD+L
Sbjct: 693  FGSVP-IFNIPGRTFPVNILYS------KTPCEDYVEAAVKQAMTIHITSPP----GDIL 741

Query: 430  IFMSGISEISSIVRAAQEYNEK--------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLR 481
            IFM+G  EI +   + +E  E+            ++LP++S L  + Q ++F    +G R
Sbjct: 742  IFMTGQDEIEAACFSLKERMEQLVSSSSREITNLLILPIYSQLPADLQAKIFQKPEDGAR 801

Query: 482  KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
            KCIV+TNIAETS+T+DGI +V+D+G  K   ++    M  LQ F IS+A+++QR GRAGR
Sbjct: 802  KCIVATNIAETSLTVDGIYYVIDTGYGKMKVFNPRMGMDALQVFPISRAASDQRAGRAGR 861

Query: 542  TGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 600
            TGPG CYRLY+E  Y + +     PEI+R ++ +++L L  + + ++  F F++ PP EN
Sbjct: 862  TGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQEN 921

Query: 601  IESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            I +S+  L   GA+++   +T LG  + + P+D PL KML+ G     ID VL++ ++LS
Sbjct: 922  ILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGERLDCIDEVLTIVSMLS 981

Query: 661  VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEE 720
            V S F     R  + + AR++      D LT+LN Y++W    K+      WC    ++ 
Sbjct: 982  VPSVFFRPKERAEESDAAREKFFVPESDHLTLLNVYQQW----KEHDYRGDWCNDHYLQV 1037

Query: 721  QRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
            +   +  ++RSQ   +L    +     GPD
Sbjct: 1038 KGLRKAREVRSQLLDILKQLKIELRSCGPD 1067



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 18/138 (13%)

Query: 17  LDFKQKEKFSTLMK-------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDT 63
           +DFK + KF+  MK             + E +  LP+   + E++  + + +V+++ G+T
Sbjct: 499 VDFKGEAKFAQHMKKGEAVSEFAMSKTMAEQRQYLPIFSVRDELLQVIRENQVIVVVGET 558

Query: 64  GCGKSTQIPQ--YLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKH 121
           G GK+TQ+ Q  Y +      + CTQPRR+A +S++KRV+ E  ++  + +GY IRFE  
Sbjct: 559 GSGKTTQLTQDGYTING---IVGCTQPRRVAAMSVAKRVSEEMETELGDKIGYAIRFEDV 615

Query: 122 RREKTKIVFITEGLLLRQ 139
               T I ++T+G+LLR+
Sbjct: 616 TGPNTVIKYMTDGVLLRE 633



 Score = 83.2 bits (204), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y + +     PEI+R ++ +++L L  + + ++  F F++ PP E
Sbjct: 861 RTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQE 920

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI +S+  L   GA+++   +T LG  + + P+D PL KML+ G     ID +L +
Sbjct: 921 NILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGERLDCIDEVLTI 976



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D+ L  Y V+V+DE HER L+ D L G++K ++    + K+I+ SAT+N + F  +F  +
Sbjct: 637  DSDLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSNFFGSV 696


>gi|340503783|gb|EGR30308.1| pre-mRNA splicing factor ATP-dependent rna helicase prp16, putative
           [Ichthyophthirius multifiliis]
          Length = 1029

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 150/437 (34%), Positives = 249/437 (56%), Gaps = 21/437 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L  Y  LV+DE HER L+ D L G++K +     ++KII+ SAT+N + F ++
Sbjct: 443 ESLNDADLEIYSCLVMDEAHERSLNTDVLFGILKKVAQRRRDIKIIITSATMNADKFSSF 502

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A I  +PGR +P+ + +      ++   E        + L +  ++ P    GD+L
Sbjct: 503 FGE-APIFNIPGRTFPVSIRF------EKNAVEDYVDKAVKKALQVHIQEPP----GDIL 551

Query: 430 IFMSGISEISSIVRAAQEYNEKSQ---GWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           IFM+G  +I +      E  EK +      +LP++S L  ++Q ++F+ + +  RKCI++
Sbjct: 552 IFMTGQEDIETSCLLLAERIEKMETIPSLDILPIYSQLRTDDQAKIFYKSEK--RKCIIA 609

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TNIAETS+T+DG+++V+D+G  K   Y+    M  LQ   IS+A+A QR GRAGRTGPG+
Sbjct: 610 TNIAETSLTLDGVKYVIDTGYCKLKVYNPKVGMDALQITPISQANANQRSGRAGRTGPGI 669

Query: 547 CYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           CYRLYS+  + S + E S PEI+R ++ +++L L  + + ++ +F F++ PP E I +S+
Sbjct: 670 CYRLYSDSNFRSDMLENSVPEIQRTNLSNVVLLLKSLNIDNLLEFDFMDPPPQETILNSM 729

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
             L   G +D   ++T+LGR ++  P+D PL KM++       ++ +L++ ++LSV S F
Sbjct: 730 YQLWLLGCLDELGQITALGRKMAQFPLDPPLTKMIISADELGCMEEILTIVSMLSVPSIF 789

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYE 725
                R+ + + AR +L     D LT LN +++W    K    S +WC    I+ +   +
Sbjct: 790 YRPKGREEESDAARDKLLIPESDHLTYLNVFEQW----KKNEYSAQWCNEHFIQVKTLRK 845

Query: 726 VTKLRSQFKQVLGDSGL 742
           V ++RSQ K +     L
Sbjct: 846 VREVRSQLKDIAKQQNL 862



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 81/119 (68%), Gaps = 3/119 (2%)

Query: 24  KFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR- 82
           +FS    I++ +  LPV   ++E++  + + RV+II G+TG GK+TQ+ QYL +AG+ + 
Sbjct: 325 EFSRTKTIKQQREFLPVYSVREELLKIIQENRVIIIVGETGSGKTTQLTQYLYEAGYSKY 384

Query: 83  --IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
             I CTQPRR+A +S++ RVA+E   Q    VGY IRFE +  ++T I ++T+G+LLR+
Sbjct: 385 GIIGCTQPRRVAAVSVANRVAHEFGCQLGKQVGYSIRFEDNTSKQTIIKYMTDGVLLRE 443



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG+CYRLYS+  + S + E S PEI+R ++ +++L L  + + ++ +F F++ PP E
Sbjct: 664 RTGPGICYRLYSDSNFRSDMLENSVPEIQRTNLSNVVLLLKSLNIDNLLEFDFMDPPPQE 723

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            I +S+  L   G +D   ++T LGR ++  P+D PL KM++
Sbjct: 724 TILNSMYQLWLLGCLDELGQITALGRKMAQFPLDPPLTKMII 765



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L  Y  LV+DE HER L+ D L G++K +     ++KII+ SAT+N + F ++F
Sbjct: 447  DADLEIYSCLVMDEAHERSLNTDVLFGILKKVAQRRRDIKIIITSATMNADKFSSFF 503


>gi|149189384|ref|ZP_01867669.1| ATP-dependent RNA helicase HrpA [Vibrio shilonii AK1]
 gi|148836742|gb|EDL53694.1| ATP-dependent RNA helicase HrpA [Vibrio shilonii AK1]
          Length = 1278

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 145/393 (36%), Positives = 227/393 (57%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG ++ LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLRELLPKRPDLKIIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 221 HFND-APIIEVSGRTYPVETRYRPLSGDDDGDRDQLE-GIFEAVDELCDEGL-----GDI 273

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 274 LIFMNGEREIRDTADALAKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 329

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 330 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 389

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR L
Sbjct: 390 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLL 449

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D K+R+T +GR L+ LP+D  L +M++       +  V+ +A+ LS+Q 
Sbjct: 450 EELGAINDKAKDPKKRLTPIGRKLARLPIDPRLARMVIEAPRLGCLKEVMVIASALSIQD 509

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   K       D LT +N +
Sbjct: 510 PRERPSDKQQSSDDKHKRFFDKESDFLTFVNLW 542



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 381 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 440

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T +GR L+ LP+D  L +M++       +  +++
Sbjct: 441 NIQDGVRLLEELGAINDKAKDPKKRLTPIGRKLARLPIDPRLARMVIEAPRLGCLKEVMV 500

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 501 IASALSIQ--DPRER 513



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
            LPV+Q K EI + +   +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A 
Sbjct: 57  QLPVSQKKDEIAEAIENNQVVIVAGETGSGKTTQLPKICSELGRGQFGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E  +     VGY++RF     E T++  +T+G+LL
Sbjct: 117 RSVANRIAEEMETSLGEFVGYKVRFNDQISENTQVKLMTDGILL 160



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG ++ LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLRELLPKRPDLKIIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNDAPIIEVSGRT 234



 Score = 40.0 bits (92), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYL 194


>gi|378823570|ref|ZP_09846191.1| ATP-dependent helicase HrpA [Sutterella parvirubra YIT 11816]
 gi|378597618|gb|EHY30885.1| ATP-dependent helicase HrpA [Sutterella parvirubra YIT 11816]
          Length = 1477

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 171/481 (35%), Positives = 261/481 (54%), Gaps = 32/481 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D  L +YD +++DE HER ++ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 342 AETQTDPLLLAYDTVIIDEAHERSVNIDFLLGYLKRLLAKRRDLKVIVTSATIDAERFAE 401

Query: 369 YF---NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE- 424
           +F    + A I+ + GR YP+++ Y P+ + D T    L        L+ I++     E 
Sbjct: 402 HFAENGKPAPILTISGRTYPVEIRYRPLEDADETDDHTL--------LAAIERAVSELET 453

Query: 425 --RGDVLIFMSGISEISSIVRAAQEYNEKSQ-GWI-VLPLHSTLSLEEQDRVFHYAPEGL 480
             RGD+L+F+ G  EI    R A +Y  K + G   +LPL + LS  EQ+RVF   P  +
Sbjct: 454 AGRGDILVFLPGEREI----REAADYLRKDRVGRAEILPLFARLSASEQERVFKPGP--M 507

Query: 481 RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540
           R+ +++TN+AETSIT+ GIRFVVD G  +   Y   +K+  L    +S+ASA QR GR G
Sbjct: 508 RRIVLATNVAETSITVPGIRFVVDVGTARIKRYSYRSKVEQLLIEPVSQASANQRAGRCG 567

Query: 541 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 600
           R   G+C RLY EE ++    ++ PEI R ++ +++L  + + LGDVR+FPF++APP   
Sbjct: 568 RVADGICIRLYDEEDFARRPAFTDPEIVRSNLAAVILRSMSLKLGDVREFPFVQAPPPRA 627

Query: 601 IESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           I      L +  AID    +T++GR L+ LPVD  LG+ML+ G+ F  +  +L + + L+
Sbjct: 628 IADGYSILQEINAIDDAGNLTAVGRALAKLPVDPKLGRMLLAGADFGSLRELLIITSGLT 687

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLT---VLNAYKEWLGVKKDRVRSKKWCKRRG 717
           VQ P      +    + A ++L     D L+   + N Y+E    K+   + +   KRR 
Sbjct: 688 VQDPRERPLDQQQAADQAHRQLADEKSDFLSFVKLWNWYEEAKAGKESNRKFEAEMKRRF 747

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL-ITDIPGPDASLSSRERALRHGEIKLLQAIKRKKA 776
           +  +R  E + +  Q K ++ + G  I   P   A+     RAL  G   LL  I  K A
Sbjct: 748 LSPRRMREWSDVMKQLKSLVEEMGWRINTAP---ATFEEVHRALLTG---LLGNIGSKAA 801

Query: 777 E 777
           E
Sbjct: 802 E 802



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLY EE ++    ++ PEI R ++ +++L  + + LGDVR+FPF++APP  
Sbjct: 567 GRVADGICIRLYDEEDFARRPAFTDPEIVRSNLAAVILRSMSLKLGDVREFPFVQAPPPR 626

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I      L +  AID    +T +GR L+ LPVD  LG+ML+ G+ F  +  +L++   L
Sbjct: 627 AIADGYSILQEINAIDDAGNLTAVGRALAKLPVDPKLGRMLLAGADFGSLRELLIITSGL 686

Query: 928 NFGAIDSKER 937
                D +ER
Sbjct: 687 TVQ--DPRER 694



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 3/108 (2%)

Query: 33  ETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPR 89
           E   +LPV+    E+   + + RVVI+ G+TG GK+TQ+P+  + AG     RIA TQPR
Sbjct: 234 ELAPNLPVSMRADEVKRAIEENRVVIVCGETGSGKTTQLPKIALMAGRGVTGRIAHTQPR 293

Query: 90  RIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           RIA  S++KR+A E  +   ++VG+++RF         I  +T+G+LL
Sbjct: 294 RIAASSIAKRIAEELKTPLGDVVGFKVRFTDTTSPGATIKLMTDGILL 341



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 40/62 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D  L +YD +++DE HER ++ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 342  AETQTDPLLLAYDTVIIDEAHERSVNIDFLLGYLKRLLAKRRDLKVIVTSATIDAERFAE 401

Query: 1174 YF 1175
            +F
Sbjct: 402  HF 403


>gi|423140085|ref|ZP_17127723.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. houtenae
           str. ATCC BAA-1581]
 gi|379052639|gb|EHY70530.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. houtenae
           str. ATCC BAA-1581]
          Length = 1300

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFSN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++           + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCAREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 67/107 (62%), Gaps = 5/107 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLV 909
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVL 507



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLLTDGILL 179



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 240  HFSNAPIIEVSGRT 253


>gi|328872569|gb|EGG20936.1| vacuolar protein sorting-associated protein 13 family protein
           [Dictyostelium fasciculatum]
          Length = 4631

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 160/435 (36%), Positives = 250/435 (57%), Gaps = 21/435 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  LS Y  ++LDE HER L+ D L  ++K +    + +KII+MSAT++ ELF  Y
Sbjct: 182 EAMIDPKLSKYSAIILDEAHERTLNTDILFALLKSIQSQRSSLKIIVMSATLDAELFSNY 241

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI-IDKKYPRTER--G 426
           FN+ A I+ + GR +P+++ Y      + T+ + +D    + +L I +++K    +   G
Sbjct: 242 FNK-APILYIEGRQFPVRVYY-----TEETQKDYVDAA-LVTVLQIHVNEKNDDQDGNGG 294

Query: 427 DVLIFMSGISEISSIVRAAQEYNEK----SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRK 482
           D+L+F++G  EI ++ R   E   +    S+  IV P++S L  E+Q +VF   P G RK
Sbjct: 295 DILVFLTGREEIEALERLMVERIPRLPPDSRQLIVCPIYSALPQEQQMKVFERTPAGSRK 354

Query: 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542
            +++TNIAETS+TI+GIR+VVD+G  K   Y+    + TL    IS+ASA+QR GRAGR 
Sbjct: 355 VVIATNIAETSLTINGIRYVVDTGVAKTRIYNSKIGLDTLTVRPISQASAKQRSGRAGRE 414

Query: 543 GPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
             G CYRLY+E+ Y  L   S  EIRR SI  L+L L  +G+ DV  F FLE PP E ++
Sbjct: 415 FAGKCYRLYTEDLYEQLDMSSIAEIRRSSIAMLILQLKTIGIDDVLSFDFLERPPLETVQ 474

Query: 603 SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
            S+  L    A+DS   ++ LG+ +S  P++    K L+    F  ++ VL + ++LSV+
Sbjct: 475 QSLELLYCLDALDSDGNLSPLGKKMSSFPLEPMYSKTLIMSEKFECMEEVLIIISMLSVE 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
           S F +   +  + E  ++   S  GD LT+LN ++E+  V  ++    +WC    I  + 
Sbjct: 535 SIFFSPKEKQKELEIVKRLFFSPEGDHLTLLNVFREYQKVNGNQ----QWCYDHFINAK- 589

Query: 723 FYEVTKLRSQFKQVL 737
              + K+ S F+Q+L
Sbjct: 590 --SMVKVVSVFEQLL 602



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 74/113 (65%), Gaps = 3/113 (2%)

Query: 30  KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACT 86
           +I E +  LPV   ++ +I+ +     VII  +TG GK+TQIPQYL ++GF +   +A T
Sbjct: 70  EILEQKIHLPVYSAREALIENIKNHPSVIIISETGTGKTTQIPQYLRESGFTKDGIVAIT 129

Query: 87  QPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           QPRR+A IS++KRV+ E   +    VGY +RF+     +T++ ++T+G+L+R+
Sbjct: 130 QPRRVAAISIAKRVSEEIGCELGTEVGYCVRFDDKTSPETRLKYMTDGMLVRE 182



 Score = 77.4 bits (189), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 64/115 (55%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G CYRLY+E+ Y  L   S  EIRR SI  L+L L  +G+ DV  F FLE PP E 
Sbjct: 413 REFAGKCYRLYTEDLYEQLDMSSIAEIRRSSIAMLILQLKTIGIDDVLSFDFLERPPLET 472

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           ++ S+  L    A+DS   ++ LG+ +S  P++    K L+    F  ++ +L++
Sbjct: 473 VQQSLELLYCLDALDSDGNLSPLGKKMSSFPLEPMYSKTLIMSEKFECMEEVLII 527



 Score = 60.1 bits (144), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 3/91 (3%)

Query: 1090 EAGERLESMDANEVEFRLKH--DPKQVQVAA-DNFLSSYDVLVLDEIHERHLHGDFLLGV 1146
            E G  +   D    E RLK+  D   V+ A  D  LS Y  ++LDE HER L+ D L  +
Sbjct: 154  EVGYCVRFDDKTSPETRLKYMTDGMLVREAMIDPKLSKYSAIILDEAHERTLNTDILFAL 213

Query: 1147 IKCLLHSTAEVKIILMSATINIELFHTYFNR 1177
            +K +    + +KII+MSAT++ ELF  YFN+
Sbjct: 214  LKSIQSQRSSLKIIVMSATLDAELFSNYFNK 244


>gi|89074916|ref|ZP_01161366.1| putative ATP-dependent helicase HrpA [Photobacterium sp. SKA34]
 gi|89049313|gb|EAR54876.1| putative ATP-dependent helicase HrpA [Photobacterium sp. SKA34]
          Length = 1279

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 257/456 (56%), Gaps = 23/456 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FLS YD +++DE HER L+ DF++G ++ LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRFLSQYDTIIIDEAHERSLNIDFIMGYLRELLPKRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y P+VE  D T  ++LD      I   +D+     E GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPVVEDGDDTDRDQLDA-----IFDAVDELCDEGE-GD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIF++G  EI     A ++   K +   +LPL++ LS  EQ+RVF       R+ ++ST
Sbjct: 274 ILIFLNGEREIRDTADALEK--RKLRHTEILPLYARLSAGEQNRVFQ--SHSGRRIVLST 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QR GR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEAISQASANQRMGRCGRVQEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  +R 
Sbjct: 390 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTAIGLGDIQAFPFVEAPDNRNIQDGIRL 449

Query: 608 LTQHGAIDSK-----ERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI+SK     +R++ +GR L+ LP+D  L +M++       +  V+ +A+ LS+Q
Sbjct: 450 LEELGAINSKATDPRKRLSPMGRQLARLPIDPRLARMVLEAPKLGALREVMIIASALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D +  +N +  ++  ++  + S ++   CK+  + 
Sbjct: 510 DPRERPSDKQQQSDEKHRRFNDKDSDFVAFVNLWN-YVQEQQKELSSNQFRRLCKKEYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSS 755
             R  E   +  Q  QV+ +  L   + G +AS  S
Sbjct: 569 YLRIREWQDIYFQVNQVIKE--LELKMNGNEASYDS 602



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 382 GRVQEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTAIGLGDIQAFPFVEAPDNR 441

Query: 868 NIESSVRSLTQHGAIDSK-----ERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  +R L + GAI+SK     +R++ +GR L+ LP+D  L +M++       +  +++
Sbjct: 442 NIQDGIRLLEELGAINSKATDPRKRLSPMGRQLARLPIDPRLARMVLEAPKLGALREVMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 IASALSIQ--DPRER 514



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
            LPV+Q K +I + +L  +VVI+AG+TG GK+TQ+P+  ++ G   +  I  TQPRR+A 
Sbjct: 57  QLPVSQKKDDIAEAILNNQVVIVAGETGSGKTTQLPKICLEIGRGTYGMIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E   +  + VGY++RF     E + +  +T+G+LL
Sbjct: 117 RSVASRIAEEMECEMGSHVGYKVRFNDQVSEHSHVKLMTDGILL 160



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FLS YD +++DE HER L+ DF++G ++ LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRFLSQYDTIIIDEAHERSLNIDFIMGYLRELLPKRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|449265919|gb|EMC77046.1| Putative ATP-dependent RNA helicase DHX33, partial [Columba livia]
          Length = 612

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 253/443 (57%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E   D  L  Y V++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 83  EAIGDPMLRKYSVVILDEAHERTIHTDVLFGVVKAAQKKRKELGKLPLKVIVMSATMDVD 142

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
            F  YFNR A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 143 QFSQYFNR-APVLYLEGRQHPIQIFY--------TKQPQSD---YLHAALVSVFQIHQEA 190

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +V+PL++ L   +Q RVF  A
Sbjct: 191 PASQ--DILVFLTGQEEIEAMTKTCRDIAKHLPDGCPPMVVMPLYAALPYSQQLRVFQAA 248

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++V+D+G VK   Y     +  L    +SKA A QR 
Sbjct: 249 PKGCRKVILSTNIAETSITIPGIKYVIDTGMVKAKKYSPETGLEVLAVQRVSKAQAWQRT 308

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + +TPEI+R ++ S++L L+ + + +V  F F+  P
Sbjct: 309 GRAGREDSGLCYRLYTEDEFEKFDKMTTPEIQRCNLASVMLQLLALKVPNVLNFDFMSKP 368

Query: 597 PAENIESSVRSLTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             + I++++  L   GA++ K     +T LG+ ++  P++    K ++  S FH  + +L
Sbjct: 369 SPDAIQAAIDQLDLLGAVERKGDQLVLTPLGKKMAAFPLEPKFSKTILMSSKFHCTEEIL 428

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + ++ RK+  S+ GD LT+L+ Y+ +  V  +    K WC
Sbjct: 429 TMVSLLSVDSVLHNPPARREEVQSVRKKFISSEGDHLTLLSIYRAFRNVGGN----KGWC 484

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    V+ +R+Q + +
Sbjct: 485 KENFVNSRNMMLVSDVRAQLRDI 507



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 61/85 (71%), Gaps = 3/85 (3%)

Query: 61  GDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQ+PQYL +AG  R   IA TQPRR+A ISL+ RV+ E  ++   LVGY +R
Sbjct: 2   GETGSGKTTQLPQYLYEAGIGRQGIIAVTQPRRVAAISLATRVSDEKKTELGKLVGYTVR 61

Query: 118 FEKHRREKTKIVFITEGLLLRQDSG 142
           F+    ++T+I F+T+G+LLR+  G
Sbjct: 62  FDDLTSDETRIKFLTDGMLLREAIG 86



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + +TPEI+R ++ S++L L+ + + +V  F F+  P  + 
Sbjct: 313 REDSGLCYRLYTEDEFEKFDKMTTPEIQRCNLASVMLQLLALKVPNVLNFDFMSKPSPDA 372

Query: 869 IESSVRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K     +T LG+ ++  P++    K ++  S FH  + +L +
Sbjct: 373 IQAAIDQLDLLGAVERKGDQLVLTPLGKKMAAFPLEPKFSKTILMSSKFHCTEEILTM 430



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 12/122 (9%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      +E++ E G+      R + + ++E   +   D   ++ A  D  L  Y V+
Sbjct: 37   AISLATRVSDEKKTELGKLVGYTVRFDDLTSDETRIKFLTDGMLLREAIGDPMLRKYSVV 96

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHTYFNRIAKDLL 1183
            +LDE HER +H D L GV+K       E     +K+I+MSAT++++ F  YFNR     L
Sbjct: 97   ILDEAHERTIHTDVLFGVVKAAQKKRKELGKLPLKVIVMSATMDVDQFSQYFNRAPVLYL 156

Query: 1184 SG 1185
             G
Sbjct: 157  EG 158


>gi|90579769|ref|ZP_01235578.1| putative ATP-dependent helicase HrpA [Photobacterium angustum S14]
 gi|90439343|gb|EAS64525.1| putative ATP-dependent helicase HrpA [Photobacterium angustum S14]
          Length = 1279

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 159/456 (34%), Positives = 257/456 (56%), Gaps = 23/456 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FLS YD +++DE HER L+ DF++G ++ LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRFLSQYDTIIIDEAHERSLNIDFIMGYLRELLPKRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y P+VE  D T  ++LD      I   +D+     E GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPVVEDGDDTDRDQLDA-----IFDAVDELCDEGE-GD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIF++G  EI     A ++   K +   +LPL++ LS  EQ+RVF       R+ ++ST
Sbjct: 274 ILIFLNGEREIRDTADALEK--RKLRHTEILPLYARLSAGEQNRVFQ--SHSGRRIVLST 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QR GR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEAISQASANQRMGRCGRVQEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  +R 
Sbjct: 390 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTAIGLGDIQAFPFVEAPDNRNIQDGIRL 449

Query: 608 LTQHGAIDSK-----ERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI+SK     +R++ +GR L+ LP+D  L +M++       +  V+ +A+ LS+Q
Sbjct: 450 LEELGAINSKATDPRKRLSPMGRQLARLPIDPRLARMVLEAPKLGALREVMIIASALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P    + +    +   +       D +  +N +  ++  ++  + S ++   CK+  + 
Sbjct: 510 DPRERPSDKQQQSDEKHRRFNDKDSDFVAFVNLWN-YVQEQQKELSSNQFRRLCKKEYLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSS 755
             R  E   +  Q  QV+ +  L   + G +AS  S
Sbjct: 569 YLRIREWQDIYFQVNQVIKE--LELKMNGNEASYDS 602



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 382 GRVQEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTAIGLGDIQAFPFVEAPDNR 441

Query: 868 NIESSVRSLTQHGAIDSK-----ERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  +R L + GAI+SK     +R++ +GR L+ LP+D  L +M++       +  +++
Sbjct: 442 NIQDGIRLLEELGAINSKATDPRKRLSPMGRQLARLPIDPRLARMVLEAPKLGALREVMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 IASALSIQ--DPRER 514



 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
            LPV+Q K +I + +L  +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  QLPVSQKKDDIAEAILNNQVVIVAGETGSGKTTQLPKICLEIGRGTHGMIGHTQPRRMAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E   +  + VGY++RF     E + +  +T+G+LL
Sbjct: 117 RSVASRIAEEMECEMGSHVGYKVRFNDQVSEHSHVKLMTDGILL 160



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FLS YD +++DE HER L+ DF++G ++ LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRFLSQYDTIIIDEAHERSLNIDFIMGYLRELLPKRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234



 Score = 40.4 bits (93), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FLS YD +I+DE HER L  DF++G +
Sbjct: 161 AEIQHDRFLSQYDTIIIDEAHERSLNIDFIMGYL 194


>gi|188533813|ref|YP_001907610.1| ATP-dependent RNA helicase HrpA [Erwinia tasmaniensis Et1/99]
 gi|188028855|emb|CAO96717.1| ATP-dependent helicase [Erwinia tasmaniensis Et1/99]
          Length = 1299

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 155/443 (34%), Positives = 244/443 (55%), Gaps = 22/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDK--KYPRTERG 426
           +FN  A +I+V GR YP+++ Y P+VE       + D G   ++ +I D   +  R  RG
Sbjct: 240 HFNN-APVIEVSGRTYPVEVRYRPVVE-------EADDGDRDQLQAIFDAVDELGRESRG 291

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFMSG  EI     A  + +       +LPL++ LS  EQ+RVF       R+ +++
Sbjct: 292 DILIFMSGEREIRDTADALSKRDLPHTE--ILPLYARLSNAEQNRVFQ--SHAGRRIVLA 347

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+
Sbjct: 348 TNVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEAISQASANQRKGRCGRVSEGI 407

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLY+E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR
Sbjct: 408 CIRLYAEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDISAFPFVEAPDRRNIQDGVR 467

Query: 607 SLTQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
            L + GAI    +   R+T  GR L+ LPVD  L KM++    +  +  V+ + A LS+Q
Sbjct: 468 LLEELGAITLADNQHYRLTPSGRALAQLPVDPRLAKMVLEAQKYGCVREVMIITAALSIQ 527

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    A +    +   +       D +  +N +  WL  ++  + S   ++ CK   + 
Sbjct: 528 DPRERPADKKQASDEKHQRFADKDSDFIAFVNLWN-WLQEQQKALSSSQFRRQCKTDYLN 586

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 587 YLRVREWQDIYTQLRQVVRELGL 609



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLY+E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYAEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDISAFPFVEAPDRR 460

Query: 868 NIESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI+  VR L + GAI    +   R+T  GR L+ LPVD  L KM++    +  +  ++++
Sbjct: 461 NIQDGVRLLEELGAITLADNQHYRLTPSGRALAQLPVDPRLAKMVLEAQKYGCVREVMII 520

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 521 TAALSIQ--DPRER 532



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 4/110 (3%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQ 87
           IR  +N LPV+Q KQEI D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQ
Sbjct: 71  IRYPEN-LPVSQKKQEIADAISANQVVIVAGETGSGKTTQLPKICLELGRGIRGLIGHTQ 129

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           PRR+A  ++++R+A E        VGY++RF     + T++  +T+G+LL
Sbjct: 130 PRRLAARTVAERIAAELEISLGGSVGYKVRFNDRVGDTTQVKLMTDGILL 179



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPVIEVSGRT 253


>gi|384428937|ref|YP_005638297.1| ATP-dependent helicase HrpA [Xanthomonas campestris pv. raphani
           756C]
 gi|341938040|gb|AEL08179.1| ATP-dependent helicase HrpA [Xanthomonas campestris pv. raphani
           756C]
          Length = 1349

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 250/450 (55%), Gaps = 46/450 (10%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 158 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFSR 217

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPI-------------VELDRTKSEKLDPGPYIRILSI 415
           +F+  A +I V GR +P+++ Y P+              + +RT ++         I++ 
Sbjct: 218 HFDD-APVINVEGRTFPVEVRYRPLEGESGDGDTGDGGRDGERTVNDA--------IVAA 268

Query: 416 IDKKYPRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVF 473
           ID+      RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QDRVF
Sbjct: 269 IDEITRIDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDRVF 324

Query: 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAE 533
           +  P   R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA 
Sbjct: 325 NPGPR--RRLVLATNVAETSLTVPRIRYVVDPGYARVKRYSPRQKLDRLHIEPISQASAN 382

Query: 534 QRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFL 593
           QR GR GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG + +FPFL
Sbjct: 383 QRMGRCGRIAEGICYRLYAEADFAARPAFTDPEIRRASLSGVILRMLQLGLGRIEEFPFL 442

Query: 594 EAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
           EAP    +    + L + GAID++ R+T++GR ++ LPVD+ L +MLV       +  ++
Sbjct: 443 EAPDERAVADGWQQLLELGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMI 502

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDR 706
            +AA L +Q P      R P+   A     +   D        L + +AY++   V +D 
Sbjct: 503 IVAAFLGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDL 555

Query: 707 VRSK--KWCKRRGIEEQRFYEVTKLRSQFK 734
            +SK   WC R  +   R  E  +L  Q +
Sbjct: 556 TQSKLRDWCGRHFLGFLRMREWRELHRQLR 585



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 78/130 (60%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG + +FPFLEAP   
Sbjct: 389 GRIAEGICYRLYAEADFAARPAFTDPEIRRASLSGVILRMLQLGLGRIEEFPFLEAPDER 448

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T +GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 449 AVADGWQQLLELGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMII--VAA 506

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 507 FLGIQDPRER 516



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
             LP+A+    II  +    VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 53  TQLPIAREADRIIALIRDHPVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 112

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +     VG+Q+RF     E ++I F+T+G+LL
Sbjct: 113 ARAVAARVAEELNTPLGTTVGFQVRFTDRVGEDSRIKFMTDGILL 157



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 158  AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFSR 217

Query: 1174 YFN 1176
            +F+
Sbjct: 218  HFD 220



 Score = 44.7 bits (104), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T++GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 458  LELGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMII--VAAFLGIQDPRE 515

Query: 1037 R 1037
            R
Sbjct: 516  R 516



 Score = 44.7 bits (104), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LS+YD +I+DE HER L  DFLLG +
Sbjct: 158 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYL 191



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEE- 1085
            L  GAID++ R+T++GR ++ LPVD+ L +MLV       +  M+++   L      E  
Sbjct: 458  LELGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMIIVAAFLGIQDPRERP 517

Query: 1086 EEEEEAGERLESMDAN 1101
             E  EA +   ++ A+
Sbjct: 518  PEAREAADNAHALFAD 533


>gi|212528124|ref|XP_002144219.1| ATP dependent RNA helicase, putative [Talaromyces marneffei ATCC
           18224]
 gi|210073617|gb|EEA27704.1| ATP dependent RNA helicase, putative [Talaromyces marneffei ATCC
           18224]
          Length = 670

 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 157/467 (33%), Positives = 256/467 (54%), Gaps = 34/467 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  LS Y V+++DE HER +  D LLG++K ++    E++II+ SAT+  E F  +
Sbjct: 127 EALVDPLLSRYSVIMVDEAHERSISTDILLGILKKIMKKRPELRIIISSATLQAEQFLQF 186

Query: 370 F---------------NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILS 414
           F                 + +II + GR+YP+ + Y     L+    + ++     R + 
Sbjct: 187 FCGDKTTVEGKGDELGGDVGRIISLEGRMYPVDVLY-----LENPAEDYVE-----RAIK 236

Query: 415 IIDKKYPRTERGDVLIFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQD 470
            +   + + + GD+L+F++G  EI   V+   E     + K++  + LPL + L+ E+Q 
Sbjct: 237 TVFDIHSQEDEGDILLFLTGREEIEQAVQLISERAAILHPKAKSLLPLPLFAGLTTEQQM 296

Query: 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKA 530
            VF   PE  RK +VSTNIAE S+TIDGI FV+D G VK  +Y+    + TL    +SKA
Sbjct: 297 YVFEPTPENTRKVVVSTNIAEASVTIDGIVFVIDCGFVKIRAYNPKTGIETLTATPVSKA 356

Query: 531 SAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF 590
           SA QR GRAGRT PG C+RLY+++ Y  L +  TPEI+R ++  +++ L  +G+ +V +F
Sbjct: 357 SATQRAGRAGRTKPGKCFRLYTQQSYEALPDMGTPEIQRSNLAPVVMQLKALGIDNVVRF 416

Query: 591 PFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRF-LSDLPVDIPLGKMLVFGSMFHQI 649
            FL  PPAE +  ++  L   GA+D   ++T    F +++L V+  L K+L+   +F+ +
Sbjct: 417 DFLSPPPAELMTRALELLYSLGAVDDYAKLTKPAGFRMAELGVEPMLAKVLLSAPIFNCL 476

Query: 650 DTVLSLAAVLSVQ-SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR 708
             VL++AA+LS+Q S +        + E+AR++     GD +T LN Y+ ++   K   +
Sbjct: 477 SEVLTIAAMLSLQGSLWVQHDGGKDEAESARRKFAVEEGDHMTYLNVYQAFITKGK---K 533

Query: 709 SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSS 755
             KWC+   +  +       +R+Q K+ L   GL  D   P +S S+
Sbjct: 534 DSKWCRDNLLNYKSLIRAVSVRAQLKRYLERFGLEVDSNPPISSAST 580



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 70/106 (66%), Gaps = 4/106 (3%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACTQPRRIAC 93
           LP+A+Y+++++  +    V I+ G TG GK+TQ+PQ+L QAG+    + I  TQPRR+A 
Sbjct: 22  LPIARYREKLLYLIETFPVTIVVGQTGSGKTTQLPQFLDQAGWTADGKVIGVTQPRRVAA 81

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            ++++RVA E   +    VGY IRFE      T+I F+T+GLLLR+
Sbjct: 82  TTVARRVAEEMRCKLGEEVGYSIRFEDVTSAATRIKFLTDGLLLRE 127



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 72/122 (59%), Gaps = 1/122 (0%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT PG C+RLY+++ Y  L +  TPEI+R ++  +++ L  +G+ +V +F FL  PPAE 
Sbjct: 367 RTKPGKCFRLYTQQSYEALPDMGTPEIQRSNLAPVVMQLKALGIDNVVRFDFLSPPPAEL 426

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRF-LSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           +  ++  L   GA+D   ++T    F +++L V+  L K+L+   +F+ +  +L +   L
Sbjct: 427 MTRALELLYSLGAVDDYAKLTKPAGFRMAELGVEPMLAKVLLSAPIFNCLSEVLTIAAML 486

Query: 928 NF 929
           + 
Sbjct: 487 SL 488



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPKQV---QVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            EE G  +   D      R+K     +   +   D  LS Y V+++DE HER +  D LLG
Sbjct: 98   EEVGYSIRFEDVTSAATRIKFLTDGLLLREALVDPLLSRYSVIMVDEAHERSISTDILLG 157

Query: 1146 VIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            ++K ++    E++II+ SAT+  E F  +F
Sbjct: 158  ILKKIMKKRPELRIIISSATLQAEQFLQFF 187


>gi|281343317|gb|EFB18901.1| hypothetical protein PANDA_019171 [Ailuropoda melanoleuca]
          Length = 614

 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  +VLDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 86  EAISDSLLRKYSCVVLDEAHERTVHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 145

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ +        TK  + D   Y+   ++S+  I ++ 
Sbjct: 146 LFSRYFNG-APVLYLEGRQHPIQVFF--------TKEPQQD---YLHAALVSVFQIHQEA 193

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     ++LPL+++L   +Q RVF  A
Sbjct: 194 PASQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPSMLILPLYASLPYAQQLRVFQGA 251

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 252 PKGCRKVIISTNIAETSITIAGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 311

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   GVCYRLY+E+++    + + PEI+R ++ S+LL L+ M + DV  F F+  P
Sbjct: 312 GRAGREDSGVCYRLYTEDEFEKFEKMTVPEIQRCNLASVLLQLLAMRVPDVLTFDFMSKP 371

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I ++V  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 372 SPDHIRAAVAQLDLLGALEHKDDQLSLTPVGRKMAAFPLEPRFAKTILLSPKFHCTEEIL 431

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N + R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 432 TIVSLLSVDSVLYNPSSRRDEVQAVRKKFVSSEGDHITLLNIYRTFRSLGGNKD------ 485

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WC+   +  +    V ++R+Q + +
Sbjct: 486 WCRDNFVNSKNMTLVAEVRAQLRDI 510



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 7/86 (8%)

Query: 61  GDTGCGKSTQIPQYLVQAGFQR-------IACTQPRRIACISLSKRVAYETLSQYSNLVG 113
           G+TG GK+TQ+PQYL + G  R       IA TQPRR+A ISL+ RV+ E  ++   LVG
Sbjct: 1   GETGSGKTTQLPQYLYEGGIGRQGVIQGVIAVTQPRRVAAISLAARVSDEKRTELGKLVG 60

Query: 114 YQIRFEKHRREKTKIVFITEGLLLRQ 139
           Y +RF+    E T+I F+T+G+LLR+
Sbjct: 61  YTVRFDDVTSEDTRIKFLTDGMLLRE 86



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 68/118 (57%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   GVCYRLY+E+++    + + PEI+R ++ S+LL L+ M + DV  F F+  P  ++
Sbjct: 316 REDSGVCYRLYTEDEFEKFEKMTVPEIQRCNLASVLLQLLAMRVPDVLTFDFMSKPSPDH 375

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I ++V  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 376 IRAAVAQLDLLGALEHKDDQLSLTPVGRKMAAFPLEPRFAKTILLSPKFHCTEEILTI 433



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 12/113 (10%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      +E+  E G+      R + + + +   +   D   ++ A +D+ L  Y  +
Sbjct: 40   AISLAARVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLREAISDSLLRKYSCV 99

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHTYFN 1176
            VLDE HER +H D L GV+K       E     +K+I+MSAT++++LF  YFN
Sbjct: 100  VLDEAHERTVHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFSRYFN 152


>gi|320165541|gb|EFW42440.1| RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 1303

 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 160/435 (36%), Positives = 241/435 (55%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L SY V++LDE HER +H D + G++K       ++K+I+ SAT++ E F +Y
Sbjct: 752  ECLIDGDLKSYSVIMLDEAHERTIHTDVMFGLLKSCAQRRPDLKLIVTSATLDAEKFSSY 811

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F     I  +PGR +P+++ Y    E D      LD    + ++ I   + P    GD+L
Sbjct: 812  FFG-CPIFTIPGRTFPVEVLYSREPENDY-----LD-ASLMTVMQIHLTEPP----GDIL 860

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S+L  E Q ++F  AP G RK I
Sbjct: 861  VFLTGQEEIDTSCEILYE-RMKSLGPDVPELIILPVYSSLPSEMQTKIFDPAPPGGRKVI 919

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    M  L    IS+A A QR GRAGRTGP
Sbjct: 920  IATNIAETSLTIDGIYYVVDPGFVKQNVYNPKTGMDALVVTPISQAQARQRAGRAGRTGP 979

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   + + + PEI+R ++ S +LSL  MG+ D+  F F++ PP + + S
Sbjct: 980  GKCYRLYTERAYRDEMLQTNVPEIQRTNMASTVLSLKAMGINDLITFDFMDPPPPQTLIS 1039

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++ +L   GA+D +  +T LGR +++ P++ PL KML+    F   D +L++ A+LSVQ+
Sbjct: 1040 AMENLFSLGALDDEGLLTRLGRKMAEFPLEPPLAKMLIQSVEFGCSDELLTVVAMLSVQN 1099

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     R    +  + +     GD  T+L  Y  W   K     S+ WC    ++ +  
Sbjct: 1100 VFFRPKDRQAIADQKKAKFHQAEGDHCTLLAVYNGWKANK----FSQPWCFENFLQARTL 1155

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1156 RRAADVR---KQMLG 1167



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 79/116 (68%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RI 83
           T + I E + +LP+ + + +++  V + +++I+ G+TG GK+TQI QYL +AG     RI
Sbjct: 637 TSLSIVEQRKTLPIYKLRSQLLQAVEENQILIVIGETGSGKTTQITQYLAEAGLTARGRI 696

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A +S++KRV+ E   +    VGY IRFE    ++T+I ++T+G+LLR+
Sbjct: 697 GCTQPRRVAAMSVAKRVSEEFGCRLGAEVGYTIRFEDCTSQETQIKYMTDGMLLRE 752



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 73/116 (62%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   + + + PEI+R ++ S +LSL  MG+ D+  F F++ PP +
Sbjct: 976  RTGPGKCYRLYTERAYRDEMLQTNVPEIQRTNMASTVLSLKAMGINDLITFDFMDPPPPQ 1035

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + S++ +L   GA+D +  +T LGR +++ P++ PL KML+    F   D +L +
Sbjct: 1036 TLISAMENLFSLGALDDEGLLTRLGRKMAEFPLEPPLAKMLIQSVEFGCSDELLTV 1091



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L SY V++LDE HER +H D + G++K       ++K+I+ SAT++ E F +YF
Sbjct: 756  DGDLKSYSVIMLDEAHERTIHTDVMFGLLKSCAQRRPDLKLIVTSATLDAEKFSSYF 812


>gi|261210892|ref|ZP_05925182.1| ATP-dependent helicase HrpA [Vibrio sp. RC341]
 gi|260839867|gb|EEX66467.1| ATP-dependent helicase HrpA [Vibrio sp. RC341]
          Length = 1309

 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 154/443 (34%), Positives = 251/443 (56%), Gaps = 20/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLD-PGPYIRILSIIDKKYPRTERGD 427
           +F+  A II+V GR YP+++ Y P+   D ++S++    G +  +  + D+       GD
Sbjct: 250 HFSN-APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL-----GD 303

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++T
Sbjct: 304 ILIFMNGEREIRDTADALSKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLAT 359

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 360 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGIC 419

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 420 IRLYSEEDFLSRPEFTDPEILRTNLASVILLMTALGLGDIEAFPFVEAPDKRNIQDGVRL 479

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  V+ +A+ LS+Q
Sbjct: 480 LEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKIGCLKEVMIIASALSIQ 539

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P    + +    +   +       D LT++N +  ++G ++  + S   ++ CK   + 
Sbjct: 540 DPRERPSDKQQASDEKHRRFNHEDSDFLTLVNLW-HYIGQQQKALTSNQFRRQCKLDYLN 598

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q  Q   + G 
Sbjct: 599 YLRVREWQDVYTQLHQSTREMGF 621



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILLMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  G+ L+ LP+D  L +M++  S    +  +++
Sbjct: 472 NIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKIGCLKEVMI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IASALSIQ--DPRER 544



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 68/103 (66%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I D + K +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIADAIAKHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILL 189



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263



 Score = 40.8 bits (94), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DF+LG +
Sbjct: 190 AEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYL 223


>gi|303227984|ref|NP_001093527.3| putative ATP-dependent RNA helicase DHX33-like [Danio rerio]
          Length = 680

 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 261/468 (55%), Gaps = 32/468 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKC-----LLHSTAEVKIILMSATINIE 364
           E   D  L  Y V++LDE HER +H D L GV+K      L  +   +K+++MSAT++++
Sbjct: 151 EAIGDPLLLRYTVVILDEAHERTVHTDVLFGVVKAAQRRRLEQNKIPLKVVVMSATMDVD 210

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSIIDKKYPR 422
           LF  YFN+ + ++ + GR +PIQ+ Y        TK  + D   Y++  ++SI       
Sbjct: 211 LFSQYFNK-SPVLYLEGRQHPIQIYY--------TKQPQSD---YLQAALVSIFQIHQEA 258

Query: 423 TERGDVLIFMSGISEISSIVRAAQEYN----EKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               D+L+F++G  EI ++ R  ++ +    + S    V+PL+++L   +Q RVF  AP+
Sbjct: 259 PSSHDILVFLTGQEEIEALARTCRDISKHLPDTSGSMTVVPLYASLPPAQQMRVFLPAPK 318

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
           G RK I+STNIAETSITI GI++V+D+G VK   ++  + +  L    +SKA A QR GR
Sbjct: 319 GSRKVILSTNIAETSITISGIKYVIDTGMVKAKRFNPDSGLEVLAVQRVSKAQAWQRAGR 378

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
           AGR   G CYRLY+E+++  LA  + PEI+R ++ S++L L+ +G+ DV  F F+  P  
Sbjct: 379 AGREDAGSCYRLYTEDEFENLANMTVPEIQRCNLASVVLQLLALGVPDVLNFDFVSKPSP 438

Query: 599 ENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           E++ ++V  L   GA+D K+    +T LG+ ++  P++    K L+    F   + +L++
Sbjct: 439 ESMRTAVEQLCILGAVDRKDDHVSLTPLGKKMACFPLEPRFSKTLLISPDFSCTEEILTI 498

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKR 715
            ++LSV S   N   R  +  + RK+  S+ GD +T+LN Y+ +  V  +    K WC+ 
Sbjct: 499 ISLLSVDSVLYNPPARRDEVISVRKKFISSEGDHITLLNIYRAFKKVSGN----KDWCRE 554

Query: 716 RGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHG 763
             +  +    V ++R+Q + +     L   +      L++  R L HG
Sbjct: 555 NFVNSRNMGLVGEVRAQLRDICIKMNL--KLESSVCDLANVRRCLAHG 600



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 70/108 (64%), Gaps = 3/108 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LP+ Q + ++I  + +    +  G+TG GK+TQIPQYL +AG  R   IA TQPRR+A I
Sbjct: 47  LPIYQSRTQVISQLRQLHSAVFIGETGSGKTTQIPQYLYEAGIGRQGIIAITQPRRVAAI 106

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
           SL+ RVA E   Q   LVGY +RFE     +TK+ F+T+G+LLR+  G
Sbjct: 107 SLAGRVAEEKKVQLGKLVGYTVRFEDVTSPETKLKFMTDGMLLREAIG 154



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G CYRLY+E+++  LA  + PEI+R ++ S++L L+ +G+ DV  F F+  P  E+
Sbjct: 381 REDAGSCYRLYTEDEFENLANMTVPEIQRCNLASVVLQLLALGVPDVLNFDFVSKPSPES 440

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           + ++V  L   GA+D K+    +T LG+ ++  P++    K L+    F   + +L +
Sbjct: 441 MRTAVEQLCILGAVDRKDDHVSLTPLGKKMACFPLEPRFSKTLLISPDFSCTEEILTI 498



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 12/114 (10%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      EE++ + G+      R E + + E + +   D   ++ A  D  L  Y V+
Sbjct: 105  AISLAGRVAEEKKVQLGKLVGYTVRFEDVTSPETKLKFMTDGMLLREAIGDPLLLRYTVV 164

Query: 1129 VLDEIHERHLHGDFLLGVIKC-----LLHSTAEVKIILMSATINIELFHTYFNR 1177
            +LDE HER +H D L GV+K      L  +   +K+++MSAT++++LF  YFN+
Sbjct: 165  ILDEAHERTVHTDVLFGVVKAAQRRRLEQNKIPLKVVVMSATMDVDLFSQYFNK 218


>gi|297807315|ref|XP_002871541.1| EMB3011 [Arabidopsis lyrata subsp. lyrata]
 gi|297317378|gb|EFH47800.1| EMB3011 [Arabidopsis lyrata subsp. lyrata]
          Length = 1223

 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 153/450 (34%), Positives = 248/450 (55%), Gaps = 24/450 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D+ L  Y V+V+DE HER L+ D L G++K ++    + K+I+ SAT+N + F  +
Sbjct: 630  ETLKDSDLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSNF 689

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F  +  I  +PGR +P+ + Y       +T  E        + ++I     P    GD+L
Sbjct: 690  FGSVP-IFNIPGRTFPVNILYS------KTPCEDYVEAAVKQAMTIHITSPP----GDIL 738

Query: 430  IFMSGISEISSIVRAAQEYNEK--------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLR 481
            IFM+G  EI +   + +E  E+            ++LP++S L  + Q ++F    +G R
Sbjct: 739  IFMTGQDEIEAACFSLKERMEQLVSSSSREITNLLILPIYSQLPADLQAKIFQKPEDGAR 798

Query: 482  KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
            KCIV+TNIAETS+T+DGI +V+D+G  K   ++    M  LQ F IS+A+++QR GRAGR
Sbjct: 799  KCIVATNIAETSLTVDGIYYVIDTGYGKMKVFNPRMGMDALQVFPISRAASDQRAGRAGR 858

Query: 542  TGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 600
            TGPG CYRLY+E  Y + +     PEI+R ++ +++L L  + + ++  F F++ PP EN
Sbjct: 859  TGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQEN 918

Query: 601  IESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            I +S+  L   GA+++   +T LG  + + P+D PL KML+ G     I+ VL++ ++LS
Sbjct: 919  ILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGERLDCINEVLTIVSMLS 978

Query: 661  VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEE 720
            V S F     R  + + AR++      D LT+LN Y++W    K+      WC    ++ 
Sbjct: 979  VPSVFFRPKERAEESDAAREKFFVPESDHLTLLNVYQQW----KEHDYRGDWCNDHYLQV 1034

Query: 721  QRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
            +   +  ++RSQ   +L    +     GPD
Sbjct: 1035 KGLRKAREVRSQLLDILKQLKIPLKSCGPD 1064



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 18/138 (13%)

Query: 17  LDFKQKEKFSTLMK-------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDT 63
           +DFK + KF+  MK             + E +  LP+   + E++  + + +V+++ G+T
Sbjct: 496 VDFKGEAKFAQHMKKGEAVSEFAMSKTMAEQRQYLPIFSVRDELLQVIRENQVIVVVGET 555

Query: 64  GCGKSTQIPQ--YLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKH 121
           G GK+TQ+ Q  Y +      + CTQPRR+A +S++KRV+ E  ++  + +GY IRFE  
Sbjct: 556 GSGKTTQLTQDGYTING---IVGCTQPRRVAAMSVAKRVSEEMETELGDKIGYAIRFEDV 612

Query: 122 RREKTKIVFITEGLLLRQ 139
               T I ++T+G+LLR+
Sbjct: 613 TGPNTVIKYMTDGVLLRE 630



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y + +     PEI+R ++ +++L L  + + ++  F F++ PP E
Sbjct: 858 RTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQE 917

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI +S+  L   GA+++   +T LG  + + P+D PL KML+ G     I+ +L +
Sbjct: 918 NILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGERLDCINEVLTI 973



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D+ L  Y V+V+DE HER L+ D L G++K ++    + K+I+ SAT+N + F  +F  +
Sbjct: 634  DSDLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSNFFGSV 693


>gi|88706540|ref|ZP_01104244.1| ATP-dependent helicase HrpA [Congregibacter litoralis KT71]
 gi|88699252|gb|EAQ96367.1| ATP-dependent helicase HrpA [Congregibacter litoralis KT71]
          Length = 1230

 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 156/439 (35%), Positives = 250/439 (56%), Gaps = 20/439 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E+  D  L  YD L++DE HER L+ DF+LG +K LL    ++K+++ SATI++  F  +
Sbjct: 103 EMQRDRDLRQYDTLIIDEAHERSLNIDFILGYLKRLLPRRPDLKVLVTSATIDVARFSEH 162

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP---RTERG 426
           FN  A +I+V GR YP+   Y P    D + +E L     +R ++ + K+       E G
Sbjct: 163 FND-APVIEVSGRSYPVTTHYLP---RDSSDAEDL-----LRQVASVVKEVQAGRHGEPG 213

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF-HYAPEGLRKCIV 485
           D+L+F+SG  +I  + R  +     + G  VLPL++ LS  EQ RVF   +  GLR  ++
Sbjct: 214 DMLVFLSGERDIRDVARQLR----GAPGLDVLPLYARLSQGEQARVFGRGSARGLR-VVL 268

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           STN+AETS+T+ GIRFV+D G+ +   Y    ++  L    IS+ASA+QR+GR GR GPG
Sbjct: 269 STNVAETSVTVPGIRFVIDPGEARISRYSYRTRVQRLPIEPISRASADQRRGRCGRVGPG 328

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           VC RLY+EE Y    E++ PEI+R ++ +++L ++ +GLG++ +FPFLE P +  I    
Sbjct: 329 VCLRLYTEEDYLNRPEFTDPEIKRSNLAAVVLQMLQLGLGNIARFPFLEPPDSRLIRDGY 388

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
           R L + GA++SKE++T LGR ++  P+D  L +M++    F  +  +L +A+ LS+Q P 
Sbjct: 389 RLLDELGAVNSKEQLTRLGRRMAAFPIDPALSRMVLAAQEFSVLPEMLVIASALSIQDPR 448

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRF 723
              A R    + A         D ++++N ++ +   +++   +K  K CK+  +   R 
Sbjct: 449 ERPADRQSQADQAHARFADPRSDFMSLVNLWRYYEEQRQELSENKLRKLCKKEYLSWLRM 508

Query: 724 YEVTKLRSQFKQVLGDSGL 742
            E   +  Q        GL
Sbjct: 509 REWRDVHRQISIACRSQGL 527



 Score =  104 bits (259), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 83/130 (63%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R GPGVC RLY+EE Y    E++ PEI+R ++ +++L ++ +GLG++ +FPFLE P + 
Sbjct: 323 GRVGPGVCLRLYTEEDYLNRPEFTDPEIKRSNLAAVVLQMLQLGLGNIARFPFLEPPDSR 382

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I    R L + GA++SKE++T LGR ++  P+D  L +M++    F  +  ML++  AL
Sbjct: 383 LIRDGYRLLDELGAVNSKEQLTRLGRRMAAFPIDPALSRMVLAAQEFSVLPEMLVIASAL 442

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 443 SIQ--DPRER 450



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 71/101 (70%), Gaps = 3/101 (2%)

Query: 40  VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACISL 96
           +A++++EI D +   +VVI+AG+TG GK+TQ+P+  ++ G    +RI  TQPRR+A  ++
Sbjct: 1   MAEHRREIADALRDHQVVIVAGETGSGKTTQLPKICLELGRGRVERIGHTQPRRLAARTV 60

Query: 97  SKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           ++R+A E      +LVGYQ+RF++   E+T +  +T+G+LL
Sbjct: 61  AQRIAEEVGLPLGDLVGYQVRFQEQLGERTAVKLMTDGILL 101



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            D  L  YD L++DE HER L+ DF+LG +K LL    ++K+++ SATI++  F  +FN
Sbjct: 107  DRDLRQYDTLIIDEAHERSLNIDFILGYLKRLLPRRPDLKVLVTSATIDVARFSEHFN 164



 Score = 42.4 bits (98), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 11/109 (10%)

Query: 1018 DTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 1077
            D   LLD     GA++SKE++T LGR ++  P+D  L +M++    F  +  ML++  AL
Sbjct: 386  DGYRLLD---ELGAVNSKEQLTRLGRRMAAFPIDPALSRMVLAAQEFSVLPEMLVIASAL 442

Query: 1078 NFVHHSEEEEEEEAGERLESMDANEVEFRLKHDPKQVQVAADNFLSSYD 1126
            +      ++  E   +R    D     F    DP+   ++  N    Y+
Sbjct: 443  SI-----QDPRERPADRQSQADQAHARF---ADPRSDFMSLVNLWRYYE 483


>gi|157145691|ref|YP_001453010.1| ATP-dependent RNA helicase HrpA [Citrobacter koseri ATCC BAA-895]
 gi|157082896|gb|ABV12574.1| hypothetical protein CKO_01440 [Citrobacter koseri ATCC BAA-895]
          Length = 1300

 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 244/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI   E     ++T  GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITIDEQQTAYKLTPSGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI   E     ++T  GR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITIDEQQTAYKLTPSGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQAILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|334124010|ref|ZP_08498019.1| ATP-dependent helicase HrpA [Enterobacter hormaechei ATCC 49162]
 gi|333389009|gb|EGK60175.1| ATP-dependent helicase HrpA [Enterobacter hormaechei ATCC 49162]
          Length = 1300

 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+       GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGNESAGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     +LPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALSKRDLRHTE--ILPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +  + T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIADELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|195873262|ref|ZP_02696837.2| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195634502|gb|EDX52854.1| ATP-dependent helicase HrpA [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 1306

 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR Y +++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 246 HFNN-APIIEVSGRTYLVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 298

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 299 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 354

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 355 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 414

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 415 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 474

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 475 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 534

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 535 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 594 YLRVREWQDIYTQLRQVVKELGI 616



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 466

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 467 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 ITSALSIQ--DPRER 539



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 81  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 141 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 185



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 186  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259


>gi|379761852|ref|YP_005348249.1| ATP-dependent helicase HrpA [Mycobacterium intracellulare MOTT-64]
 gi|378809794|gb|AFC53928.1| ATP-dependent helicase HrpA [Mycobacterium intracellulare MOTT-64]
          Length = 1305

 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 168/499 (33%), Positives = 253/499 (50%), Gaps = 22/499 (4%)

Query: 278 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337
            Y V   D + +R L      G++        E+  D  L  YD L+LDE HER L+ DF
Sbjct: 146 GYSVRFTDRVGDRTLIKLMTDGIL------LAEIQRDRRLLRYDTLILDEAHERSLNIDF 199

Query: 338 LLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHP--IVE 395
           LLG ++ LL    ++++I+ SATI  + F  +F   A II+V GR YP+++ Y P  +  
Sbjct: 200 LLGYLRELLPRRPDLRVIVTSATIEPQRFAAHFEN-APIIEVSGRTYPVEVRYRPLEVAV 258

Query: 396 LDRTKSEKLDPGPYI-------RILSIID--KKYPRTERGDVLIFMSGISEISSIVRAAQ 446
              +  +  DP   I        I +I+D  ++      GDVL+F+SG  EI     A  
Sbjct: 259 PSASTDDPDDPDHEIVRTETRDEIEAIVDAIRELEAEPPGDVLVFLSGEREIRDTADALT 318

Query: 447 EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSG 506
                     VLPL++ L   EQ +VF  AP   R+ +++TN+AETS+T+ GIR+V+D G
Sbjct: 319 FLTNGPGHTEVLPLYARLPTAEQQKVF--APHTGRRVVLATNVAETSLTVPGIRYVIDPG 376

Query: 507 KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPE 566
             +   Y    K+  L    IS+ASA QR GR GR  PGVC RLYSE+ ++    Y+ PE
Sbjct: 377 NARISRYSRRLKVQRLPIEPISQASAAQRAGRCGRVAPGVCIRLYSEQDFAARPRYTEPE 436

Query: 567 IRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRF 626
           I R ++ ++LL +  + +GD+ KFPFL+ P   ++   V+ L + GA D +  +T LGR 
Sbjct: 437 ILRTNLAAVLLQMAALQIGDIEKFPFLDPPDRRSVRDGVQLLVELGAFDGRGAITELGRR 496

Query: 627 LSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNH 686
           L+ LPVD  LG+M++       +  +L LAA LS+  P    + R+             H
Sbjct: 497 LARLPVDPRLGRMILQAETEGCVREMLVLAAALSIPDPRERPSDREEAAREKHARFADEH 556

Query: 687 GDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLIT 744
            D ++ LN +    G +K    S  ++ C+   +   R  E   L  Q + + GD G++ 
Sbjct: 557 SDFMSYLNLWHYLRGQRKSLSGSAFRRMCRSEFLHYLRIREWQDLVGQLRSIAGDLGIVE 616

Query: 745 DIPGPDASLSSRERALRHG 763
           D  G  A  +    AL  G
Sbjct: 617 DTAGEPADPARVHAALVAG 635



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PGVC RLYSE+ ++    Y+ PEI R ++ ++LL +  + +GD+ KFPFL+ P   
Sbjct: 410 GRVAPGVCIRLYSEQDFAARPRYTEPEILRTNLAAVLLQMAALQIGDIEKFPFLDPPDRR 469

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           ++   V+ L + GA D +  +T LGR L+ LPVD  LG+M++       +  ML+L  AL
Sbjct: 470 SVRDGVQLLVELGAFDGRGAITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAAL 529

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 530 SIP--DPRER 537



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRR 90
           T   LPV+  +QEI D +   +VV+IAG+TG GK+TQ+P+  ++AG      I  TQPRR
Sbjct: 64  TYPDLPVSARRQEIADAIRGNQVVVIAGETGSGKTTQLPKICLEAGRGIRGTIGHTQPRR 123

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  ++++R+A E  S     VGY +RF     ++T I  +T+G+LL
Sbjct: 124 LAARTVAQRIADELASPLGETVGYSVRFTDRVGDRTLIKLMTDGILL 170



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L+LDE HER L+ DFLLG ++ LL    ++++I+ SATI  + F  
Sbjct: 171  AEIQRDRRLLRYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLRVIVTSATIEPQRFAA 230

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 231  HFENAPIIEVSGRT 244



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query: 1023 LDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHH 1082
            + L +  GA D +  +T LGR L+ LPVD  LG+M++       +  ML+L  AL+    
Sbjct: 475  VQLLVELGAFDGRGAITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAALSIPDP 534

Query: 1083 SEEEEEEEAGER 1094
             E   + E   R
Sbjct: 535  RERPSDREEAAR 546


>gi|386385082|ref|ZP_10070403.1| ATP-dependent helicase [Streptomyces tsukubaensis NRRL18488]
 gi|385667477|gb|EIF90899.1| ATP-dependent helicase [Streptomyces tsukubaensis NRRL18488]
          Length = 1314

 Score =  258 bits (658), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 159/457 (34%), Positives = 247/457 (54%), Gaps = 18/457 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 177 AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVVITSATIDPERFSR 236

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A II+V GR YP+++ Y P++E D   + + D      I    ++      +GD+
Sbjct: 237 HFGE-APIIEVSGRTYPVEVRYRPLLEEDADDAAESDRDQITAICEAAEELMAEG-KGDI 294

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG  EI     A  + N +     VLPL++ LS  EQ RVF   P   R+ +++TN
Sbjct: 295 LVFLSGEREIRDTADALNKRNYRFTE--VLPLYARLSHAEQHRVFQ--PHTGRRIVLATN 350

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C 
Sbjct: 351 VAETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGICI 410

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ +    E++  EI R ++ S++L +   GLGD+ KFPF++ P   NI   V+ L
Sbjct: 411 RLYSEDDFDARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLL 470

Query: 609 TQHGAIDSK---------ERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVL 659
            + GA D           +++T LGR LS LPVD  L +M+V       +  V+ +AA L
Sbjct: 471 QELGAFDPAQKAPRGKEGQKLTPLGRKLSQLPVDPRLARMVVEAEKNGCVREVMVIAAAL 530

Query: 660 SVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRG 717
           S+Q P    A +    +      +    D L  LN ++     +K+R  S  ++ CK+  
Sbjct: 531 SIQDPRERPADKQTQADQQHARFKDETSDFLAFLNLWRYVREQQKERGSSSFRRMCKQEY 590

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL-ITDIPGPDASL 753
           +   R  E   + SQ +QV    G+ + +  GP++ +
Sbjct: 591 LNFLRIREWQDIYSQVRQVAKSMGIHVNEEDGPESGV 627



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 11/139 (7%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSE+ +    E++  EI R ++ S++L +   GLGD+ KFPF++ P   
Sbjct: 402 GRTSDGICIRLYSEDDFDARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHR 461

Query: 868 NIESSVRSLTQHGAIDSK---------ERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQID 918
           NI   V+ L + GA D           +++T LGR LS LPVD  L +M+V       + 
Sbjct: 462 NIRDGVQLLQELGAFDPAQKAPRGKEGQKLTPLGRKLSQLPVDPRLARMVVEAEKNGCVR 521

Query: 919 TMLLLDLALNFGAIDSKER 937
            ++++  AL+    D +ER
Sbjct: 522 EVMVIAAALSIQ--DPRER 538



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 69/104 (66%), Gaps = 4/104 (3%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV++ + EI++ +   +VVI+AG+TG GK+TQIP+  ++ G      I  TQPRRIA  
Sbjct: 73  LPVSRKRDEILEAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVRGMIGHTQPRRIAAR 132

Query: 95  SLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLL 137
           ++++RVA E  +     VG+++RF ++  ++ T +  +T+G+LL
Sbjct: 133 TVAERVAEELRTPLGEAVGWKVRFTDQVNQDATFVKLMTDGILL 176



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 177  AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVVITSATIDPERFSR 236

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 237  HFGEAPIIEVSGRT 250


>gi|417827525|ref|ZP_12474094.1| ATP-dependent helicase HrpA [Shigella flexneri J1713]
 gi|335576339|gb|EGM62597.1| ATP-dependent helicase HrpA [Shigella flexneri J1713]
          Length = 1300

 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ P I R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPGILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ P I R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPGILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|323456999|gb|EGB12865.1| hypothetical protein AURANDRAFT_19250 [Aureococcus anophagefferens]
          Length = 1074

 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 151/433 (34%), Positives = 231/433 (53%), Gaps = 20/433 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E  ADN L  Y  L+LDE HER +H D L G++K LL    ++K+++ SAT++ E F  Y
Sbjct: 525 EYLADNDLGRYAALILDEAHERTIHTDVLFGLLKDLLGRRPDLKLVVTSATLDAEKFSAY 584

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F     I  +PGRL+P+++ Y    E D   +        I ++ I    +     GDVL
Sbjct: 585 FFDC-PIFTIPGRLFPVEVLYTKEPEADYLDAA------LITVMQI----HLSEPAGDVL 633

Query: 430 IFMSGISEISSIVRAAQEYNEKSQGW----IVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F++G  EI S         E   G     ++LP++  L  E Q R+F   P G RKC+V
Sbjct: 634 VFLTGQEEIDSCCEILHARMEALGGLAPELLILPVYGALPAEMQSRIFEPPPPGARKCVV 693

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAE S+TIDGI +VVD G  K+ +Y+    M +L    IS+ASA QR GRAGRTGPG
Sbjct: 694 ATNIAEASLTIDGIYYVVDPGFCKQKAYNPKLGMDSLVVTPISQASARQRSGRAGRTGPG 753

Query: 546 VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            CYRLY+E    + +   S PEI+R ++ +++L L  MG+ D+  F F++ PP   +  +
Sbjct: 754 KCYRLYTEAALRTEMLPCSVPEIQRTNLGNVVLQLKAMGIHDLLAFDFMDPPPLATLVGA 813

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           +++L   GA+D +  +T  GR +++ P++  L KML+  +     + VLS+ A+LSV+ P
Sbjct: 814 MQALYALGALDDEGLLTRFGRKMAEFPLEPQLSKMLIAAADLGCAEEVLSVVAMLSVEQP 873

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F     +    +  + +     GD L +L  Y  W    K    S  WC    ++ +   
Sbjct: 874 FYRPKEKQAQADAKKAKFFQPEGDHLMLLAVYDAW----KRANFSNPWCYENFLQARAMR 929

Query: 725 EVTKLRSQFKQVL 737
               +R Q   ++
Sbjct: 930 RAADVRKQIVSIM 942



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 78/127 (61%), Gaps = 7/127 (5%)

Query: 20  KQKEKFS----TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL 75
           +QK++ S    +   +RE + +LP+A  + E+   V   +V+++ G+TG GK+TQ+ QY+
Sbjct: 399 QQKQQLSFGHVSNKSLREQRAALPIAALRTELEAAVAAHQVLVVIGETGSGKTTQMTQYM 458

Query: 76  VQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFIT 132
            + G      + CTQPRR+A +S++KRVA E   +    VGY IRFE      T + ++T
Sbjct: 459 AEMGLTARGAVGCTQPRRVAAMSVAKRVAEEFGCELGAEVGYSIRFEDCTSPATVLKYMT 518

Query: 133 EGLLLRQ 139
           +G+L+R+
Sbjct: 519 DGMLMRE 525



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG CYRLY+E    + +   S PEI+R ++ +++L L  MG+ D+  F F++ PP 
Sbjct: 748 GRTGPGKCYRLYTEAALRTEMLPCSVPEIQRTNLGNVVLQLKAMGIHDLLAFDFMDPPPL 807

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
             +  ++++L   GA+D +  +T  GR +++ P++  L KML+
Sbjct: 808 ATLVGAMQALYALGALDDEGLLTRFGRKMAEFPLEPQLSKMLI 850



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            ADN L  Y  L+LDE HER +H D L G++K LL    ++K+++ SAT++ E F  YF
Sbjct: 528  ADNDLGRYAALILDEAHERTIHTDVLFGLLKDLLGRRPDLKLVVTSATLDAEKFSAYF 585


>gi|323497585|ref|ZP_08102602.1| ATP-dependent RNA helicase HrpA [Vibrio sinaloensis DSM 21326]
 gi|323317334|gb|EGA70328.1| ATP-dependent RNA helicase HrpA [Vibrio sinaloensis DSM 21326]
          Length = 1309

 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 144/393 (36%), Positives = 230/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 192 AEIQHDRYLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 251

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 252 HFSD-APIIEVSGRTYPVETRYRPLRGEDDGDRDQLE-GIFEAVDELCDEGL-----GDI 304

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 305 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 360

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 361 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 420

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N++  VR L
Sbjct: 421 RLYSEDDFESRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNVQDGVRLL 480

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D K+R+TS+GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 481 EELGAINPNAKDPKKRLTSVGRQLARLPIDPRLARMVLESPKYGALKEVMVIAAALSIQD 540

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT +N +
Sbjct: 541 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNLW 573



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 412 GRVEEGICIRLYSEDDFESRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 471

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           N++  VR L + GAI     D K+R+T++GR L+ LP+D  L +M++    +  +  +++
Sbjct: 472 NVQDGVRLLEELGAINPNAKDPKKRLTSVGRQLARLPIDPRLARMVLESPKYGALKEVMV 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IAAALSIQ--DPRER 544



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K +I + +   +VVIIAG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 89  LPVSQKKDDIAEAIENNQVVIIAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 148

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     + T+I  +T+G+LL
Sbjct: 149 SVANRIAEEMETKLGEFVGYKVRFNDQISDNTQIKLMTDGILL 191



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 192  AEIQHDRYLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 251

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 252  HFSDAPIIEVSGRT 265


>gi|328712508|ref|XP_003244828.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
            PRP16-like [Acyrthosiphon pisum]
          Length = 1190

 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 241/428 (56%), Gaps = 19/428 (4%)

Query: 314  DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
            D  L +Y  +++DE HER L+ D L G+++ ++    ++K+I+ SAT++   F  +F  +
Sbjct: 606  DPDLDNYSCVIMDEAHERSLNTDVLFGLLREVVTRRTDLKLIVTSATMDASKFSLFFGNV 665

Query: 374  AKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMS 433
                 + GR +P++      V   +   E        + L I    + +   GD+LIFM 
Sbjct: 666  P-TFNIAGRTFPVE------VMFSKNPCEDYVEAAVKQALQI----HLQPHDGDILIFMP 714

Query: 434  GISEISSIVRA-AQEYNEKSQG--WIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490
            G  +I       A+  NE +     +VLP++S L  + Q ++F  + +GLRKC+V+TNIA
Sbjct: 715  GQEDIEVTCETLAERLNEIADAPQLLVLPIYSQLPSDLQAKIFQKSSDGLRKCVVATNIA 774

Query: 491  ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRL 550
            ETS+T+DGI+FVVD+G  K   Y+    M  LQ + IS+A+A QR GRAGRTGPG C+RL
Sbjct: 775  ETSLTVDGIKFVVDTGYCKMKVYNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRL 834

Query: 551  YSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLT 609
            Y+E QY   L   + PEI+R ++ + +L L  +G+ D+ +F F++ PP +NI +S+  L 
Sbjct: 835  YTERQYKDDLLMGTVPEIQRTNLANTVLLLKSLGVQDLLQFHFMDPPPQDNILNSLYQLW 894

Query: 610  QHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRA 669
              GA+D+   +TSLGR +++ P+D P  KML+  S  +    VL + ++LSV S F    
Sbjct: 895  VLGALDNTGELTSLGRQMAEFPLDPPQCKMLIVSSAMNCTADVLIIVSMLSVPSIFYRPK 954

Query: 670  FRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKL 729
             R+ D +  R++ +    D LT+LN Y +W    K    S  WC    I  +   +V ++
Sbjct: 955  GREEDSDNVREKFQVPESDHLTMLNVYNQW----KQNSYSASWCNEHFIHIKAMRKVREV 1010

Query: 730  RSQFKQVL 737
            R Q K ++
Sbjct: 1011 RQQLKDIM 1018



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 83/125 (66%), Gaps = 9/125 (7%)

Query: 18  DFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77
           DF +K+ ++      + +  LPV   +QE+++ + +  +VI+ G+TG GK+TQ+ QYL +
Sbjct: 484 DFARKKTYA------QQRQYLPVFAARQELLNIIRENNIVIVIGETGSGKTTQLTQYLHE 537

Query: 78  AGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEG 134
            G+ +   I CTQPRR+A +S++KRV+ E  ++  + VGY IRFE    EKT I ++T+G
Sbjct: 538 EGYSKFGMIGCTQPRRVAAMSVAKRVSDEMNTKLGDEVGYAIRFEDCTSEKTVIKYMTDG 597

Query: 135 LLLRQ 139
           +LLR+
Sbjct: 598 ILLRE 602



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 78/125 (62%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG C+RLY+E QY   L   + PEI+R ++ + +L L  +G+ D+ +F F++ PP +
Sbjct: 825 RTGPGQCFRLYTERQYKDDLLMGTVPEIQRTNLANTVLLLKSLGVQDLLQFHFMDPPPQD 884

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           NI +S+  L   GA+D+   +T+LGR +++ P+D P  KML+  S  +    +L++   L
Sbjct: 885 NILNSLYQLWVLGALDNTGELTSLGRQMAEFPLDPPQCKMLIVSSAMNCTADVLIIVSML 944

Query: 928 NFGAI 932
           +  +I
Sbjct: 945 SVPSI 949



 Score = 47.8 bits (112), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 41/69 (59%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  L +Y  +++DE HER L+ D L G+++ ++    ++K+I+ SAT++   F  +F  +
Sbjct: 606  DPDLDNYSCVIMDEAHERSLNTDVLFGLLREVVTRRTDLKLIVTSATMDASKFSLFFGNV 665

Query: 1179 AKDLLSGST 1187
                ++G T
Sbjct: 666  PTFNIAGRT 674


>gi|188990602|ref|YP_001902612.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167732362|emb|CAP50554.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 1371

 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 249/450 (55%), Gaps = 46/450 (10%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPI-------------VELDRTKSEKLDPGPYIRILSI 415
           +F+  A +I V GR +P+++ Y P+              + +RT ++         I++ 
Sbjct: 240 HFDD-APVINVEGRTFPVEVRYRPLEGESGDGDTGDGGRDGERTVNDA--------IVAA 290

Query: 416 IDKKYPRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVF 473
           ID+      RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS  +QDRVF
Sbjct: 291 IDEITRIDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAADQDRVF 346

Query: 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAE 533
           +  P   R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA 
Sbjct: 347 NPGPR--RRLVLATNVAETSLTVPRIRYVVDPGYARVKRYSPRQKLDRLHIEPISQASAN 404

Query: 534 QRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFL 593
           QR GR GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++  GLG + +FPFL
Sbjct: 405 QRMGRCGRIAEGICYRLYAEADFAARPAFTDPEIRRASLSGVILRMLQFGLGRIEEFPFL 464

Query: 594 EAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
           EAP    +    + L + GAID++ R+T++GR ++ LPVD+ L +MLV       +  ++
Sbjct: 465 EAPDERAVADGWQQLLELGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMI 524

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDP-------LTVLNAYKEWLGVKKDR 706
            +AA L +Q P      R P+   A     +   D        L + +AY++   V +D 
Sbjct: 525 IIAASLGIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWDAYRQ---VHEDL 577

Query: 707 VRSK--KWCKRRGIEEQRFYEVTKLRSQFK 734
            +SK   WC R  +   R  E  +L  Q +
Sbjct: 578 TQSKLRDWCGRHFLGFLRMREWRELHRQLR 607



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 78/130 (60%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++  GLG + +FPFLEAP   
Sbjct: 411 GRIAEGICYRLYAEADFAARPAFTDPEIRRASLSGVILRMLQFGLGRIEEFPFLEAPDER 470

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID++ R+T +GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 471 AVADGWQQLLELGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAA 528

Query: 928 NFGAIDSKER 937
           + G  D +ER
Sbjct: 529 SLGIQDPRER 538



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
             LP+A+    II  +    VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  TQLPIAREADRIIALIRDHPVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +     VG+Q+RF     E ++I F+T+G+LL
Sbjct: 135 ARAVAARVAEELNTPLGTTVGFQVRFTDRVGEDSRIKFMTDGILL 179



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFSR 239

Query: 1174 YFN 1176
            +F+
Sbjct: 240  HFD 242



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID++ R+T++GR ++ LPVD+ L +MLV       +  M++  +A + G  D +E
Sbjct: 480  LELGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMII--IAASLGIQDPRE 537

Query: 1037 R 1037
            R
Sbjct: 538  R 538



 Score = 44.7 bits (104), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LS+YD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYL 213



 Score = 43.9 bits (102), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEE- 1085
            L  GAID++ R+T++GR ++ LPVD+ L +MLV       +  M+++  +L      E  
Sbjct: 480  LELGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAASLGIQDPRERP 539

Query: 1086 EEEEEAGERLESMDAN 1101
             E  EA +   ++ A+
Sbjct: 540  PEAREAADNAHALFAD 555


>gi|262042892|ref|ZP_06016037.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039732|gb|EEW40858.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 1300

 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E    
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERSSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI +  + T+     LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGL 610



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S+    +GY++RF  H  E T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQSEPGGCIGYKVRFSDHVSENTMVKLMTDGILL 179



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E    
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERSSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|418764201|ref|ZP_13320304.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35185]
 gi|418767087|ref|ZP_13323156.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35199]
 gi|418772751|ref|ZP_13328754.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21539]
 gi|418776876|ref|ZP_13332813.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 33953]
 gi|418780723|ref|ZP_13336612.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35188]
 gi|418786934|ref|ZP_13342746.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21559]
 gi|418801704|ref|ZP_13357337.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35202]
 gi|419787272|ref|ZP_14312985.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. Levine 1]
 gi|419791809|ref|ZP_14317454.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. Levine 15]
 gi|392619776|gb|EIX02154.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. Levine 15]
 gi|392620112|gb|EIX02482.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. Levine 1]
 gi|392730549|gb|EIZ87790.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35185]
 gi|392731878|gb|EIZ89101.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21539]
 gi|392735723|gb|EIZ92894.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35199]
 gi|392745215|gb|EJA02250.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 33953]
 gi|392747119|gb|EJA04121.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 21559]
 gi|392749773|gb|EJA06750.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35188]
 gi|392779908|gb|EJA36571.1| ATP-dependent RNA helicase HrpA [Salmonella enterica subsp.
           enterica serovar Newport str. CVM 35202]
          Length = 1300

 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR Y +++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYLVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|387774169|ref|ZP_10129441.1| ATP-dependent helicase HrpA [Haemophilus parahaemolyticus HK385]
 gi|386902313|gb|EIJ67154.1| ATP-dependent helicase HrpA [Haemophilus parahaemolyticus HK385]
          Length = 1312

 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 156/473 (32%), Positives = 253/473 (53%), Gaps = 28/473 (5%)

Query: 279 YDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFL 338
           Y V   D++ E  L      G++        E+  D +L+ YD L++DE HER L+ DF+
Sbjct: 170 YKVRFNDQVSENTLVKLMTDGIL------LAEIQNDRYLNQYDTLIIDEAHERSLNNDFI 223

Query: 339 LGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDR 398
           LG +K +L+   ++K+I+ SATI++E F  +FN  A II+V GR +P+++ Y PIVE D 
Sbjct: 224 LGYLKQILYKRPDLKVIITSATIDVERFSRHFNN-APIIEVSGRTFPVEVRYRPIVEED- 281

Query: 399 TKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVL 458
                 D      IL+ +D+      RGD+LIFM+G  EI     A Q+ N +     +L
Sbjct: 282 ------DQDQLQAILNAVDELQAEG-RGDILIFMNGEREIRDTAEALQKQNLRFTE--IL 332

Query: 459 PLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAK 518
           PL++ LS EEQ R+F   P  L + I++TN+AETS+TI  I++V+D+G  +   Y    K
Sbjct: 333 PLYARLSAEEQQRIFR--PSSLNRIILATNVAETSLTIPNIKYVIDTGTARISRYSYRTK 390

Query: 519 MSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLS 578
           +  L    IS+ASA QRKGR GR   G+C RLYSEE +    E++ PEI R ++ S++L 
Sbjct: 391 VQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFKSRPEFTDPEILRTNLASVILQ 450

Query: 579 LVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGA-------IDSKERVTSLGRFLSDLP 631
           +  +GL D+  FPF+++P    ++  +R L +  A          K  +T +GR L+ LP
Sbjct: 451 MASLGLSDITAFPFVDSPDVRQVQDGIRLLEELQAFHIRKTKFGEKRELTPIGRQLAQLP 510

Query: 632 VDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLT 691
           +D  LG+M++  +    +  V+ + + LS+Q P      +    +   +       D L 
Sbjct: 511 IDPRLGRMVIEAAKNGSLHEVMMIVSALSIQDPRERPQEKQQASDEKHRRFADKDSDFLA 570

Query: 692 VLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
            +N +      +K+  ++  +K C++  +   R  E   +  Q +  + + GL
Sbjct: 571 FVNLWHYIQTQQKELSKNQFRKQCQKDYLNYLRVREWQDIYHQLRLSVREMGL 623



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACI 94
           LPV+  ++EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRRIA  
Sbjct: 91  LPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRIAAR 150

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  S+    +GY++RF     E T +  +T+G+LL
Sbjct: 151 SVANRIAEELQSEIGATIGYKVRFNDQVSENTLVKLMTDGILL 193



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GL D+  FPF+++P    
Sbjct: 413 RVSEGICIRLYSEEDFKSRPEFTDPEILRTNLASVILQMASLGLSDITAFPFVDSPDVRQ 472

Query: 869 IESSVRSLTQHGA-------IDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           ++  +R L +  A          K  +T +GR L+ LP+D  LG+M++  +    +  ++
Sbjct: 473 VQDGIRLLEELQAFHIRKTKFGEKRELTPIGRQLAQLPIDPRLGRMVIEAAKNGSLHEVM 532

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 533 MIVSALSIQ--DPRER 546



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +L+   ++K+I+ SATI++E F  
Sbjct: 194  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILYKRPDLKVIITSATIDVERFSR 253

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 254  HFNNAPIIEVSGRT 267



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
            ++  D +L+ YD LI+DE HER L  DF+LG +   L+
Sbjct: 194 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILY 232


>gi|12044832|gb|AAG33228.2|AF305070_1 DEAH-box RNA helicase [Chlamydomonas reinhardtii]
          Length = 1432

 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 156/446 (34%), Positives = 253/446 (56%), Gaps = 31/446 (6%)

Query: 317  LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
            + +Y V+V+DE HER L+ D L G++K ++    + K+I+ SAT++ + F  +F  +   
Sbjct: 841  VDNYSVVVMDEAHERSLNTDVLFGILKRVVARRRDFKLIVTSATLDAQKFSDFFGSVPIF 900

Query: 377  IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
            I +PGR +P+ + +   V+ D  ++        ++    I  + P    GD+LIFM+G  
Sbjct: 901  I-IPGRTFPVDVLWSRTVQEDYVEAA-------VKQAVTIHLRDPP---GDILIFMTGQE 949

Query: 437  EISSIVRAAQEYNE--KSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
            EI +   +  E  E  +S G      ++LP++S L  + Q ++F  A EG+RK IVSTNI
Sbjct: 950  EIEATCFSLAERLEHMRSGGSEIPELLILPIYSQLPSDLQAKIFDKAEEGVRKVIVSTNI 1009

Query: 490  AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYR 549
            AETS+T+DGI +V+D+G VK   Y+    M  LQ F IS+A+A QR GRAGRTGPG CYR
Sbjct: 1010 AETSLTVDGILYVIDTGYVKMKVYNPKMGMDALQVFPISQAAAGQRSGRAGRTGPGTCYR 1069

Query: 550  LYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
            LY+E  +   +   + PEI+R ++ +++L L  + + D+ +F F++ PP +NI +S+ +L
Sbjct: 1070 LYTESAFRHEMLTMNVPEIQRTNLANVVLLLKSLKVNDLLEFGFMDPPPRDNIVNSMYNL 1129

Query: 609  TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
               GA+D+   +T LGR + + P+D PL KML+ G+     + VL++ ++LSV   F   
Sbjct: 1130 WTLGALDNTGGLTHLGRQMVEFPLDPPLAKMLLMGAQLGCSNEVLTVVSMLSVPPVF--- 1186

Query: 669  AFRDPD----CETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
             FR PD     + AR++      D LT+L+ Y +W    K+      WC R  ++ +   
Sbjct: 1187 -FRPPDRAEESDAAREKFFVPESDHLTLLHVYNQW----KNNGYRGDWCDRHYLQSKGLR 1241

Query: 725  EVTKLRSQFKQVLGDSGLITDIPGPD 750
            +  ++R Q   ++   GL     G D
Sbjct: 1242 KAKEVRQQLADIMQQCGLQLTSAGSD 1267



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 82/137 (59%), Gaps = 16/137 (11%)

Query: 19  FKQKEKFSTLMKIRETQN-------------SLPVAQYKQEIIDTVLKERVVIIAGDTGC 65
           +KQ  +F   MK  E  +             SLPV   + E++  + + +VV++ G+TG 
Sbjct: 698 YKQANQFKNHMKKNEANSDFSRNKTLEQQRRSLPVYGVRDELLQVIRENQVVVVVGETGS 757

Query: 66  GKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR 122
           GK+TQ+ QYL + G+ +   I CTQPRR+A +S++KRV+ E   +  + VGY IRFE   
Sbjct: 758 GKTTQMTQYLHEDGYTKYGTIGCTQPRRVAAMSVAKRVSEEMGVELGDQVGYSIRFEDCT 817

Query: 123 REKTKIVFITEGLLLRQ 139
            +KT I ++T+G+LLR+
Sbjct: 818 SDKTIIKYMTDGVLLRE 834



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 69/108 (63%), Gaps = 1/108 (0%)

Query: 808  SRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
             RTGPG CYRLY+E  +   +   + PEI+R ++ +++L L  + + D+ +F F++ PP 
Sbjct: 1060 GRTGPGTCYRLYTESAFRHEMLTMNVPEIQRTNLANVVLLLKSLKVNDLLEFGFMDPPPR 1119

Query: 867  ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMF 914
            +NI +S+ +L   GA+D+   +T LGR + + P+D PL KML+ G+  
Sbjct: 1120 DNIVNSMYNLWTLGALDNTGGLTHLGRQMVEFPLDPPLAKMLLMGAQL 1167



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 41/66 (62%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            + +Y V+V+DE HER L+ D L G++K ++    + K+I+ SAT++ + F  +F  +   
Sbjct: 841  VDNYSVVVMDEAHERSLNTDVLFGILKRVVARRRDFKLIVTSATLDAQKFSDFFGSVPIF 900

Query: 1182 LLSGST 1187
            ++ G T
Sbjct: 901  IIPGRT 906


>gi|10440614|gb|AAG16852.1|AC069145_1 putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
          Length = 869

 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 245/451 (54%), Gaps = 27/451 (5%)

Query: 323 LVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGR 382
           L++DEIHER ++ DFL+ +++ LL    +++++LMSATIN ELF  YF   A I+ +PG 
Sbjct: 253 LLVDEIHERGMNEDFLIIILRDLLPRRPDLRLVLMSATINAELFSKYFGE-APIMHIPGF 311

Query: 383 LYPI-QLEYHPIVELDRTK------------------SEKLDP-GPYIRILSIIDKKYPR 422
            +P+ +L    I+E  R K                  S K DP      +   I+     
Sbjct: 312 TFPVTELFLEDILEKTRYKINSERDNFQGNSRRKRLASVKSDPISDAFEVEGTIEYICRH 371

Query: 423 TERGDVLIFMSGISEISSIVRAAQEYN--EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL 480
              G +L+F++G  EIS ++   +  N    S  ++V+PLH ++    Q  +F   P  +
Sbjct: 372 EGEGAILVFLTGWDEISKLLDKIKGNNLLGNSNRFLVIPLHGSMPTVNQREIFDRPPANM 431

Query: 481 RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540
           RK +++TNIAE+SITID + +V+D GK KE SYD   K++ L   WISKASA QR+GRAG
Sbjct: 432 RKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAG 491

Query: 541 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPA 598
           R  PG CYRLY +  Y  + ++  PEI R  +  L L++  + LG V  F    L+ P  
Sbjct: 492 RVQPGACYRLYPKVIYDAMPQFQLPEILRTPLQELCLTIKSLQLGAVASFLAKALQPPDP 551

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
            ++ +++  L   GA+D  E +TSLGR L  LP+D  +GKML+ GS+F  +D  L++AA 
Sbjct: 552 LSVNNAIELLKTVGALDDVEELTSLGRHLCTLPLDPNIGKMLLIGSVFQCLDPALTIAAA 611

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNH-GDPLTVLNAYKEWLGVKKDRVRSKKWCKRRG 717
           L+ ++PF     R  + +  ++    +   D + ++ A++ W   ++   R + +C    
Sbjct: 612 LAYRNPFVLPIDRKEEADAVKRSFAGDSCSDHIALVKAFEAWKEARRSG-RERSFCWENF 670

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPG 748
           +       +  +R+QF  +L D G ++   G
Sbjct: 671 LSPMTLQMMDDMRNQFFDLLSDIGFVSKTRG 701



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 73/112 (65%), Gaps = 7/112 (6%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR-------IACTQ 87
           ++ LP  + ++E +  V   +V++I+G+TGCGK+TQ+PQ++++            I CTQ
Sbjct: 131 RDKLPAFKMREEFLKAVAANQVLVISGETGCGKTTQLPQFILEEEIDNLRGADCSIICTQ 190

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           PRRI+ IS++ R+A E   +  + VGYQIR E  R  +T+++F T G+LLR+
Sbjct: 191 PRRISAISVAARIASERGEELGDTVGYQIRLESKRSAQTRLLFCTTGVLLRR 242



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 7/142 (4%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPA 866
           R  PG CYRLY +  Y  + ++  PEI R  +  L L++  + LG V  F    L+ P  
Sbjct: 492 RVQPGACYRLYPKVIYDAMPQFQLPEILRTPLQELCLTIKSLQLGAVASFLAKALQPPDP 551

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
            ++ +++  L   GA+D  E +T+LGR L  LP+D  +GKML+ GS+F  +D  L +  A
Sbjct: 552 LSVNNAIELLKTVGALDDVEELTSLGRHLCTLPLDPNIGKMLLIGSVFQCLDPALTIAAA 611

Query: 927 LNFG-----AIDSKERVTSLGR 943
           L +       ID KE   ++ R
Sbjct: 612 LAYRNPFVLPIDRKEEADAVKR 633



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 101/233 (43%), Gaps = 50/233 (21%)

Query: 1023 LDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN---- 1078
            ++L    GA+D  E +TSLGR L  LP+D  +GKML+ GS+F  +D  L +  AL     
Sbjct: 558  IELLKTVGALDDVEELTSLGRHLCTLPLDPNIGKMLLIGSVFQCLDPALTIAAALAYRNP 617

Query: 1079 FVHHSEEEEEEEAGERLESMD----------ANEVEFRLKHDPKQVQVAADNFLSSYDVL 1128
            FV   + +EE +A +R  + D          A E     +   ++     +NFLS   + 
Sbjct: 618  FVLPIDRKEEADAVKRSFAGDSCSDHIALVKAFEAWKEARRSGRERSFCWENFLSPMTLQ 677

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTA 1188
            ++D++  R+   D L               I  +S T  ++ ++ Y              
Sbjct: 678  MMDDM--RNQFFDLL-------------SDIGFVSKTRGLKAYNYY-------------- 708

Query: 1189 RSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSV 1241
               KD+ ++  +L +GLYP V            K   F+ KD G V +HP SV
Sbjct: 709  --GKDLEMVCAVLCAGLYPNVV-----QCKRRGKRTAFYTKDVGKVDIHPSSV 754



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 37/48 (77%)

Query: 1128 LVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            L++DEIHER ++ DFL+ +++ LL    +++++LMSATIN ELF  YF
Sbjct: 253  LLVDEIHERGMNEDFLIIILRDLLPRRPDLRLVLMSATINAELFSKYF 300


>gi|254822851|ref|ZP_05227852.1| ATP-dependent helicase HrpA [Mycobacterium intracellulare ATCC
           13950]
 gi|379747264|ref|YP_005338085.1| ATP-dependent helicase HrpA [Mycobacterium intracellulare ATCC
           13950]
 gi|378799628|gb|AFC43764.1| ATP-dependent helicase HrpA [Mycobacterium intracellulare ATCC
           13950]
          Length = 1305

 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 168/499 (33%), Positives = 253/499 (50%), Gaps = 22/499 (4%)

Query: 278 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337
            Y V   D + +R L      G++        E+  D  L  YD L+LDE HER L+ DF
Sbjct: 146 GYSVRFTDRVGDRTLIKLMTDGIL------LAEIQRDRRLLRYDTLILDEAHERSLNIDF 199

Query: 338 LLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHP--IVE 395
           LLG ++ LL    ++++I+ SATI  + F  +F   A II+V GR YP+++ Y P  +  
Sbjct: 200 LLGYLRELLPRRPDLRVIVTSATIEPQRFAAHFEN-APIIEVSGRTYPVEVRYRPLEVAV 258

Query: 396 LDRTKSEKLDPGPYI-------RILSIID--KKYPRTERGDVLIFMSGISEISSIVRAAQ 446
              +  +  DP   I        I +I+D  ++      GDVL+F+SG  EI     A  
Sbjct: 259 PSASTDDPDDPDHEIVRTETRDEIEAIVDAIRELEAEPPGDVLVFLSGEREIRDTADALT 318

Query: 447 EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSG 506
                     VLPL++ L   EQ +VF  AP   R+ +++TN+AETS+T+ GIR+V+D G
Sbjct: 319 FLTNGPGHTEVLPLYARLPTAEQQKVF--APHTGRRVVLATNVAETSLTVPGIRYVIDPG 376

Query: 507 KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPE 566
             +   Y    K+  L    IS+ASA QR GR GR  PGVC RLYSE+ ++    Y+ PE
Sbjct: 377 NARISRYSRRLKVQRLPIEPISQASAAQRAGRCGRVAPGVCIRLYSEQDFAARPRYTEPE 436

Query: 567 IRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRF 626
           I R ++ ++LL +  + +GD+ KFPFL+ P   ++   V+ L + GA D +  +T LGR 
Sbjct: 437 ILRTNLAAVLLQMAALQIGDIEKFPFLDPPDRRSVRDGVQLLVELGAFDGRGAITELGRR 496

Query: 627 LSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNH 686
           L+ LPVD  LG+M++       +  +L LAA LS+  P    + R+             H
Sbjct: 497 LARLPVDPRLGRMILQAETEGCVREMLVLAAALSIPDPRERPSDREEAAREKHARFADEH 556

Query: 687 GDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLIT 744
            D ++ LN +    G +K    S  ++ C+   +   R  E   L  Q + + GD G++ 
Sbjct: 557 SDFMSYLNLWHYLRGQRKSLSGSAFRRMCRSEFLHYLRIREWQDLVGQLRSIAGDLGIVE 616

Query: 745 DIPGPDASLSSRERALRHG 763
           D  G  A  +    AL  G
Sbjct: 617 DTAGEPADPARVHAALVAG 635



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PGVC RLYSE+ ++    Y+ PEI R ++ ++LL +  + +GD+ KFPFL+ P   
Sbjct: 410 GRVAPGVCIRLYSEQDFAARPRYTEPEILRTNLAAVLLQMAALQIGDIEKFPFLDPPDRR 469

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           ++   V+ L + GA D +  +T LGR L+ LPVD  LG+M++       +  ML+L  AL
Sbjct: 470 SVRDGVQLLVELGAFDGRGAITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAAL 529

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 530 SIP--DPRER 537



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRR 90
           T   LPV+  +QEI D +   +VV+IAG+TG GK+TQ+P+  ++AG      I  TQPRR
Sbjct: 64  TYPDLPVSARRQEIADAIRGNQVVVIAGETGSGKTTQLPKICLEAGRGIRGTIGHTQPRR 123

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  ++++R+A E  S     VGY +RF     ++T I  +T+G+LL
Sbjct: 124 LAARTVAQRIADELASPLGEAVGYSVRFTDRVGDRTLIKLMTDGILL 170



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L+LDE HER L+ DFLLG ++ LL    ++++I+ SATI  + F  
Sbjct: 171  AEIQRDRRLLRYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLRVIVTSATIEPQRFAA 230

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 231  HFENAPIIEVSGRT 244



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query: 1023 LDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHH 1082
            + L +  GA D +  +T LGR L+ LPVD  LG+M++       +  ML+L  AL+    
Sbjct: 475  VQLLVELGAFDGRGAITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAALSIPDP 534

Query: 1083 SEEEEEEEAGER 1094
             E   + E   R
Sbjct: 535  RERPSDREEAAR 546


>gi|430813496|emb|CCJ29153.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 693

 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 153/438 (34%), Positives = 249/438 (56%), Gaps = 24/438 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  LS Y V++LDE HER ++ D LLG++K +     E+KII+ SAT+N E F +Y
Sbjct: 160 ETLIDPLLSQYSVIMLDEAHERSIYTDILLGILKKIQRKRKELKIIISSATLNAEEFLSY 219

Query: 370 FNR----IAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTER 425
           FN+     AKII + GR+YP+ + Y     L    S  ++     + +  + +   + + 
Sbjct: 220 FNKDNNDAAKIISIEGRMYPVDILY-----LSEPTSNYVE-----KSIETVFEINSKEKD 269

Query: 426 GDVLIFMSGISEISSIV-----RAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL 480
           GD+L+F++G  EI + V     R+ Q  +   +  + LPL+S LS E Q  +F  +P+G+
Sbjct: 270 GDILVFLTGKEEIDACVSGIIERSTQLLSSNDRKILALPLYSGLSTERQLEIFASSPQGV 329

Query: 481 RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540
           RK +VSTNI+ETS+TIDGI +V+DSG VK   ++      +L    ISKASA QR GRAG
Sbjct: 330 RKVVVSTNISETSVTIDGIVYVIDSGFVKLRVFNTHTNFESLIVTPISKASALQRAGRAG 389

Query: 541 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 600
           RT  G C+RLY+   ++ L E S PEI+R  +  L+L L  +G+ ++ +F ++  PP+E 
Sbjct: 390 RTQAGKCFRLYNSANFNNLRETSIPEIQRSDLTGLILQLKALGIDNIARFDYITNPPSEM 449

Query: 601 IESSVRSLTQHGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVL 659
           +  S+  L    ++D   R+T+ LG  +++ PVD  + K L+  S F   + +LS+AA++
Sbjct: 450 VIHSLELLFSLNSLDEYGRLTNPLGMRMAEFPVDPKMAKTLLTSSEFGCTEQILSIAAMV 509

Query: 660 SVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIE 719
           SVQ+ F  +  R    E  R++     GD +T++N +  ++   +   +S KWC    + 
Sbjct: 510 SVQNVFLPQEDRK-SFEAVRRKFSVEEGDHITLMNIFHAFITKGE---KSSKWCHENFLN 565

Query: 720 EQRFYEVTKLRSQFKQVL 737
            +       +++Q ++ L
Sbjct: 566 FKALSRALSIKTQLRRYL 583



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 20/133 (15%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKST---------------QI 71
           T + I+  +  LP+  YK  ++  + K  V I+ G+TG GK+T               ++
Sbjct: 28  TALSIKRQRELLPIYHYKNALLYLIEKNPVTIVVGETGSGKTTRSIYNSNFIFNNLFSEL 87

Query: 72  PQYLVQAGFQR----IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE-KT 126
           PQYL + G+      IACTQPRRIA  +++ RVA E      + VGY IRFE      KT
Sbjct: 88  PQYLKEIGWANNGNIIACTQPRRIAAATVAIRVAEEIGCPLGDEVGYSIRFEDVTSPGKT 147

Query: 127 KIVFITEGLLLRQ 139
           KI ++T+G+L+R+
Sbjct: 148 KIKYMTDGMLIRE 160



 Score = 70.5 bits (171), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 1/114 (0%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  G C+RLY+   ++ L E S PEI+R  +  L+L L  +G+ ++ +F ++  PP+E 
Sbjct: 390 RTQAGKCFRLYNSANFNNLRETSIPEIQRSDLTGLILQLKALGIDNIARFDYITNPPSEM 449

Query: 869 IESSVRSLTQHGAIDSKERVTT-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           +  S+  L    ++D   R+T  LG  +++ PVD  + K L+  S F   + +L
Sbjct: 450 VIHSLELLFSLNSLDEYGRLTNPLGMRMAEFPVDPKMAKTLLTSSEFGCTEQIL 503



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 42/63 (66%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  LS Y V++LDE HER ++ D LLG++K +     E+KII+ SAT+N E F +YFN+ 
Sbjct: 164  DPLLSQYSVIMLDEAHERSIYTDILLGILKKIQRKRKELKIIISSATLNAEEFLSYFNKD 223

Query: 1179 AKD 1181
              D
Sbjct: 224  NND 226


>gi|377579052|ref|ZP_09808025.1| ATP-dependent RNA helicase HrpA [Escherichia hermannii NBRC 105704]
 gi|377539701|dbj|GAB53190.1| ATP-dependent RNA helicase HrpA [Escherichia hermannii NBRC 105704]
          Length = 1300

 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 244/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 179 AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 238

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+       GD
Sbjct: 239 HFNH-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LSHEAPGD 291

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI        + N       VLPL++ LS  EQ+R+F       R+ +++T
Sbjct: 292 ILIFMSGEREIRDTADGLNKLNLPHTE--VLPLYARLSNSEQNRIFQ--SHTGRRIVLAT 347

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G+ +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 348 NVAETSLTVPGIKYVIDPGQARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 407

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 408 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 467

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 468 LEELGAITTDEQASVYKLTPLGRQLSQLPVDPRLARMVLEAQRLGCVREAMIITSALSIQ 527

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 528 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRADYLN 586

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 587 YLRVREWQDIYTQLRQVVKELGI 609



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 400 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 459

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 460 NIQDGVRLLEELGAITTDEQASVYKLTPLGRQLSQLPVDPRLARMVLEAQRLGCVREAMI 519

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 520 ITSALSIQ--DPRER 532



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           ++LPV+Q K +I+  V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 74  DTLPVSQKKDDILAAVRDNQVVIVAGETGSGKTTQLPKICMELGRGITGLIGHTQPRRLA 133

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    VGY++RF  H  + T++  +T+G+LL
Sbjct: 134 ARTVANRIAEELNTEPGGAVGYKVRFSDHVSDATQVKLMTDGILL 178



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 179  AEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 238

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 239  HFNHAPIIEVSGRT 252


>gi|283785338|ref|YP_003365203.1| ATP-dependent helicase HrpA [Citrobacter rodentium ICC168]
 gi|282948792|emb|CBG88388.1| ATP-dependent helicase HrpA [Citrobacter rodentium ICC168]
          Length = 1281

 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 159/445 (35%), Positives = 247/445 (55%), Gaps = 25/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ + F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPQRFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIID--KKYPRTER 425
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L         +I D  ++  +   
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ--------AIFDAVEELGQESP 271

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GD+LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ ++
Sbjct: 272 GDILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVL 327

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G
Sbjct: 328 ATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEG 387

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 388 ICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGV 447

Query: 606 RSLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           R L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS
Sbjct: 448 RLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIVTSALS 507

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   
Sbjct: 508 IQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDY 566

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + G+
Sbjct: 567 LNYLRVREWQDIYTQLRQVVKELGI 591



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 VTSALSIQ--DPRER 514



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQAILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF     + T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQTEPGGCIGYKVRFSDRVSDNTMVKLMTDGILL 160



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ + F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPQRFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|379754572|ref|YP_005343244.1| ATP-dependent helicase HrpA [Mycobacterium intracellulare MOTT-02]
 gi|378804788|gb|AFC48923.1| ATP-dependent helicase HrpA [Mycobacterium intracellulare MOTT-02]
          Length = 1297

 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 168/499 (33%), Positives = 253/499 (50%), Gaps = 22/499 (4%)

Query: 278 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337
            Y V   D + +R L      G++        E+  D  L  YD L+LDE HER L+ DF
Sbjct: 138 GYSVRFTDRVGDRTLIKLMTDGIL------LAEIQRDRRLLRYDTLILDEAHERSLNIDF 191

Query: 338 LLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHP--IVE 395
           LLG ++ LL    ++++I+ SATI  + F  +F   A II+V GR YP+++ Y P  +  
Sbjct: 192 LLGYLRELLPRRPDLRVIVTSATIEPQRFAAHFEN-APIIEVSGRTYPVEVRYRPLEVAV 250

Query: 396 LDRTKSEKLDPGPYI-------RILSIID--KKYPRTERGDVLIFMSGISEISSIVRAAQ 446
              +  +  DP   I        I +I+D  ++      GDVL+F+SG  EI     A  
Sbjct: 251 PSASTDDPDDPDHEIVRTETRDEIEAIVDAIRELEAEPPGDVLVFLSGEREIRDTADALT 310

Query: 447 EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSG 506
                     VLPL++ L   EQ +VF  AP   R+ +++TN+AETS+T+ GIR+V+D G
Sbjct: 311 FLTNGPGHTEVLPLYARLPTAEQQKVF--APHTGRRVVLATNVAETSLTVPGIRYVIDPG 368

Query: 507 KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPE 566
             +   Y    K+  L    IS+ASA QR GR GR  PGVC RLYSE+ ++    Y+ PE
Sbjct: 369 NARISRYSRRLKVQRLPIEPISQASAAQRAGRCGRVAPGVCIRLYSEQDFAARPRYTEPE 428

Query: 567 IRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRF 626
           I R ++ ++LL +  + +GD+ KFPFL+ P   ++   V+ L + GA D +  +T LGR 
Sbjct: 429 ILRTNLAAVLLQMAALQIGDIEKFPFLDPPDRRSVRDGVQLLVELGAFDGRGAITELGRR 488

Query: 627 LSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNH 686
           L+ LPVD  LG+M++       +  +L LAA LS+  P    + R+             H
Sbjct: 489 LARLPVDPRLGRMILQAETEGCVREMLVLAAALSIPDPRERPSDREEAAREKHARFADEH 548

Query: 687 GDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLIT 744
            D ++ LN +    G +K    S  ++ C+   +   R  E   L  Q + + GD G++ 
Sbjct: 549 SDFMSYLNLWHYLRGQRKSLSGSAFRRMCRSEFLHYLRIREWQDLVGQLRSIAGDLGIVE 608

Query: 745 DIPGPDASLSSRERALRHG 763
           D  G  A  +    AL  G
Sbjct: 609 DTAGEPADPARVHAALVAG 627



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PGVC RLYSE+ ++    Y+ PEI R ++ ++LL +  + +GD+ KFPFL+ P   
Sbjct: 402 GRVAPGVCIRLYSEQDFAARPRYTEPEILRTNLAAVLLQMAALQIGDIEKFPFLDPPDRR 461

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           ++   V+ L + GA D +  +T LGR L+ LPVD  LG+M++       +  ML+L  AL
Sbjct: 462 SVRDGVQLLVELGAFDGRGAITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAAL 521

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 522 SIP--DPRER 529



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRR 90
           T   LPV+  +QEI D +   +VV+IAG+TG GK+TQ+P+  ++AG      I  TQPRR
Sbjct: 56  TYPDLPVSARRQEIADAIRGNQVVVIAGETGSGKTTQLPKICLEAGRGIRGTIGHTQPRR 115

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  ++++R+A E  S     VGY +RF     ++T I  +T+G+LL
Sbjct: 116 LAARTVAQRIADELASPLGEAVGYSVRFTDRVGDRTLIKLMTDGILL 162



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L+LDE HER L+ DFLLG ++ LL    ++++I+ SATI  + F  
Sbjct: 163  AEIQRDRRLLRYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLRVIVTSATIEPQRFAA 222

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 223  HFENAPIIEVSGRT 236



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query: 1023 LDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHH 1082
            + L +  GA D +  +T LGR L+ LPVD  LG+M++       +  ML+L  AL+    
Sbjct: 467  VQLLVELGAFDGRGAITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAALSIPDP 526

Query: 1083 SEEEEEEEAGER 1094
             E   + E   R
Sbjct: 527  RERPSDREEAAR 538


>gi|351710621|gb|EHB13540.1| Putative ATP-dependent RNA helicase DHX33 [Heterocephalus glaber]
          Length = 748

 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 255/443 (57%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+++MSAT++++
Sbjct: 219 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKVAQKRRKELGKLPLKVVVMSATMDVD 278

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 279 LFSQYFNG-APVLYLEGRQHPIQIFY--------TKQPQHD---YLHAALVSVFQIHQEA 326

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 327 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPRMLVLPLYASLPYAQQLRVFQGA 384

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI  I++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 385 PKGYRKVIISTNIAETSITITRIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 444

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   GVCYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 445 GRAGREDSGVCYRLYTEEEFEKFDKMTVPEIQRCNLSSVMLQLLAMKVPNVLTFDFMSKP 504

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I+++V  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 505 SPDHIQAAVAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPKFAKTILLSPKFHCTEEIL 564

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  +  +    K WC
Sbjct: 565 TIVSLLSVDSVLYNPPARRDEVQGVRKKFISSEGDHITLLNIYRTFKNIGGN----KDWC 620

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    V ++R+Q +++
Sbjct: 621 KENFVNSKNMMLVAEVRAQLREI 643



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQ+PQYL +    R   IA TQPRR+
Sbjct: 112 RRSLPIFQARGQLLAQLRNLDSAVLIGETGSGKTTQLPQYLYEGSVGRQGIIAVTQPRRV 171

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RFE    E T+I F+T+G+LLR+
Sbjct: 172 AAISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLRE 219



 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   GVCYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 449 REDSGVCYRLYTEEEFEKFDKMTVPEIQRCNLSSVMLQLLAMKVPNVLTFDFMSKPSPDH 508

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+++V  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 509 IQAAVAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPKFAKTILLSPKFHCTEEILTI 566



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 12/113 (10%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      +E+  E G+      R E + + +   +   D   ++ A +D+ L  Y  +
Sbjct: 173  AISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLREAISDSLLRKYSCV 232

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHTYFN 1176
            +LDE HER +H D L GV+K       E     +K+++MSAT++++LF  YFN
Sbjct: 233  ILDEAHERTIHTDVLFGVVKVAQKRRKELGKLPLKVVVMSATMDVDLFSQYFN 285


>gi|332025135|gb|EGI65315.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
           [Acromyrmex echinatior]
          Length = 1132

 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 152/427 (35%), Positives = 243/427 (56%), Gaps = 23/427 (5%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F  +F   A  
Sbjct: 549 LDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDCSKFSAFFGNAA-T 607

Query: 377 IKVPGRLYPIQLEY--HPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
            ++PGR +P+++ +  +P+        E        ++L I    + + + GDVL+FM G
Sbjct: 608 FQIPGRTFPVEVLHAKNPV--------EDYVDAAVKQVLQI----HLQPKSGDVLVFMPG 655

Query: 435 ISEISSIVRAAQEY---NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAE 491
             +I     A +E     E +    +LP++S L  + Q ++F  +  GLRKC+V+TNIAE
Sbjct: 656 QEDIEVTCEALKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRSEGGLRKCVVATNIAE 715

Query: 492 TSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLY 551
           TS+T+DGI FVVDSG  K   Y+    M  LQ + +S+A+A+QR+GRAGRTGPG CYRLY
Sbjct: 716 TSLTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRQGRAGRTGPGQCYRLY 775

Query: 552 SEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQ 610
           +  QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +NI +S+  L  
Sbjct: 776 TRRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQLWI 835

Query: 611 HGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAF 670
            GA+D   R+T LGR +++ P+D P  +ML+  S       +L + ++LSV S F     
Sbjct: 836 LGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSIFYRPKG 895

Query: 671 RDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLR 730
           R+ D ++AR++ +    D LT LN Y +W    K    S  WC    I  +   +V ++R
Sbjct: 896 REEDSDSAREKFQVPESDHLTYLNVYNQW----KANGYSSSWCNDHFIHAKAMRKVREVR 951

Query: 731 SQFKQVL 737
           SQ +++L
Sbjct: 952 SQLEEIL 958



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 83/137 (60%), Gaps = 15/137 (10%)

Query: 18  DFKQKEKFS------------TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGC 65
           DFK  +K++                I+  + SLPV   +QE+++ + +  VVII G+TG 
Sbjct: 406 DFKAGQKYARHIGSGEITGEAKYKSIQHQRRSLPVFAVRQELLNVIRENSVVIIVGETGS 465

Query: 66  GKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR 122
           GK+TQ+ QYL + G+ R   I CTQPRR+A +S++KRV+ E  +   + VGY IRFE   
Sbjct: 466 GKTTQLTQYLHEDGYSRYGIIGCTQPRRVAAMSVAKRVSDEMATALGDKVGYAIRFEDCT 525

Query: 123 REKTKIVFITEGLLLRQ 139
            + T I ++T+G+LLR+
Sbjct: 526 SKDTVIKYMTDGILLRE 542



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+  QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +
Sbjct: 765 RTGPGQCYRLYTRRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQD 824

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           NI +S+  L   GA+D   R+T LGR +++ P+D P  +ML+  S       +L++   L
Sbjct: 825 NILNSLYQLWILGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSML 884

Query: 928 NFGAI 932
           +  +I
Sbjct: 885 SVPSI 889



 Score = 48.1 bits (113), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F  +F   A  
Sbjct: 549  LDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDCSKFSAFFGNAATF 608

Query: 1182 LLSGST 1187
             + G T
Sbjct: 609  QIPGRT 614


>gi|268573280|ref|XP_002641617.1| C. briggsae CBR-MOG-1 protein [Caenorhabditis briggsae]
          Length = 965

 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 148/434 (34%), Positives = 246/434 (56%), Gaps = 18/434 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L  Y  +++DE HER L+ D L G+++ ++   +++K+I+ SAT++ + F  +
Sbjct: 379 ECLGDGTLDQYSAIIMDEAHERSLNTDVLFGLLREVVAKRSDLKLIVTSATMDADKFADF 438

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F        +PGR +P++L +H      RT  E        + ++I    +     GD+L
Sbjct: 439 FGGNCPTFTIPGRTFPVEL-FHA-----RTPVEDYVDAAVKQAVTI----HLGAMDGDIL 488

Query: 430 IFMSGISEISSIVRAAQEYN---EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           IFM G  +I       +E     +++    VLP++S L  + Q ++F  AP G+RK IV+
Sbjct: 489 IFMPGQEDIECTCEMIKEKLGELDEAPPLAVLPIYSQLPSDLQAKIFQRAPGGMRKAIVA 548

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TNIAETS+T+DGI FV+D G  K   Y+    M  L  F +S+ASA QR GRAGRTGPG 
Sbjct: 549 TNIAETSLTVDGILFVIDPGFCKMKVYNPRIGMDALSIFPVSQASANQRTGRAGRTGPGQ 608

Query: 547 CYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           CYRLY+E Q+   L   + PEI+R ++ +++L L  + + D+ KF F++APP +N+ +S+
Sbjct: 609 CYRLYTERQFKDELLRSTVPEIQRTNLANVVLLLKSLNVDDLLKFHFMDAPPQDNMLNSM 668

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
             L   GA+D+  ++T +GR + + P+D  L KML+  +     D VL++ ++LSV + F
Sbjct: 669 YQLWTLGALDNTGQLTPMGRKMVEFPLDPTLSKMLIVSAEMGCSDEVLTIVSMLSVPAIF 728

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYE 725
                R+ + +  +++ +    D LT LN Y +W    ++   S KWC    +  +   +
Sbjct: 729 FRPKGREEEADAKKEKFQVPESDHLTFLNVYLQW----REHKYSAKWCADNYLHVKALKK 784

Query: 726 VTKLRSQFKQVLGD 739
           V ++R+Q K+++ D
Sbjct: 785 VREVRAQLKEIMQD 798



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 86/138 (62%), Gaps = 16/138 (11%)

Query: 18  DFKQKEKFSTLMK-------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTG 64
           ++K+  +F++ MK             I++ +  LPV   +Q++++ + +  VVII G+TG
Sbjct: 242 NYKESHQFASHMKDNEAVSDFAMEKTIKQQREYLPVFACRQKMMNVIRENNVVIIVGETG 301

Query: 65  CGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKH 121
            GK+TQ+ QYL++ GF     I CTQPRR+A +S+++RVA E   +    VGY IRFE  
Sbjct: 302 SGKTTQLAQYLLEDGFGEAGLIGCTQPRRVAAMSVARRVADEMGVELGQDVGYAIRFEDC 361

Query: 122 RREKTKIVFITEGLLLRQ 139
             EKT I ++T+G+LLR+
Sbjct: 362 TSEKTIIKYMTDGILLRE 379



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 77/126 (61%), Gaps = 1/126 (0%)

Query: 808 SRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG CYRLY+E Q+   L   + PEI+R ++ +++L L  + + D+ KF F++APP 
Sbjct: 602 GRTGPGQCYRLYTERQFKDELLRSTVPEIQRTNLANVVLLLKSLNVDDLLKFHFMDAPPQ 661

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
           +N+ +S+  L   GA+D+  ++T +GR + + P+D  L KML+  +     D +L +   
Sbjct: 662 DNMLNSMYQLWTLGALDNTGQLTPMGRKMVEFPLDPTLSKMLIVSAEMGCSDEVLTIVSM 721

Query: 927 LNFGAI 932
           L+  AI
Sbjct: 722 LSVPAI 727



 Score = 48.5 bits (114), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
             D  L  Y  +++DE HER L+ D L G+++ ++   +++K+I+ SAT++ + F  +F 
Sbjct: 382  GDGTLDQYSAIIMDEAHERSLNTDVLFGLLREVVAKRSDLKLIVTSATMDADKFADFFG 440


>gi|409201903|ref|ZP_11230106.1| helicase, ATP-dependent [Pseudoalteromonas flavipulchra JG1]
          Length = 1297

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 156/452 (34%), Positives = 248/452 (54%), Gaps = 15/452 (3%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  +
Sbjct: 175 EIQQDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSKH 234

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F+  A II+V GR YP+++ Y P+ ++D    E  +      I   +D+       GD+L
Sbjct: 235 FSD-APIIEVSGRTYPVEVRYRPVEDVDSQNGEA-ENDQLQGIFDAVDELCAEGP-GDIL 291

Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
           +FM+G  EI     A  + N K  G  +LPL++ LS  EQ+R+F  AP   R+ ++STN+
Sbjct: 292 VFMNGEREIRDTADALAKRNLK--GVEILPLYARLSNAEQNRIF--APHSQRRIVLSTNV 347

Query: 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYR 549
           AETS+T+ GIR+V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C R
Sbjct: 348 AETSLTVPGIRYVIDPGTARISRYSYRTKVQRLPIEAVSQASANQRKGRCGRVASGICIR 407

Query: 550 LYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLT 609
           LYSE+ +    E++ PEI R ++ S++L ++ +GLGD+ +FPF++AP + NI+  +  L 
Sbjct: 408 LYSEDDFLGRPEFTDPEILRTNLASVILQMLALGLGDISQFPFVQAPDSRNIKDGMSLLE 467

Query: 610 QHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           +  AI       K ++T  GR LS LP+D  L KM++ G+  + +   + + A LS+Q P
Sbjct: 468 ELEAIVPAQRREKAKLTESGRKLSRLPIDPRLAKMVMSGAQNNALWEAIVITAALSIQDP 527

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQR 722
                 +    +      E  H D +  LN +      ++   R+  +K C++  +   R
Sbjct: 528 RERPQDKRAAADEKHNRFECEHSDFVAYLNLWNYIEAQQQALTRNQFRKQCQKDFLAYMR 587

Query: 723 FYEVTKLRSQFKQVLGDSGL-ITDIPGPDASL 753
             E   +  Q   V  + G  I   P  D ++
Sbjct: 588 VREWQDIVYQLTTVCEELGFKINSSPASDEAV 619



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 80/134 (59%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L ++ +GLGD+ +FPF++AP + N
Sbjct: 399 RVASGICIRLYSEDDFLGRPEFTDPEILRTNLASVILQMLALGLGDISQFPFVQAPDSRN 458

Query: 869 IESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  +  L +  AI       K ++T  GR LS LP+D  L KM++ G+  + +   +++
Sbjct: 459 IKDGMSLLEELEAIVPAQRREKAKLTESGRKLSRLPIDPRLAKMVMSGAQNNALWEAIVI 518

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 519 TAALSIQ--DPRER 530



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 3/108 (2%)

Query: 33  ETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPR 89
           E    LPV+Q K +I   +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPR
Sbjct: 66  EYPEQLPVSQKKDDIKAAIANNQVVIVAGETGSGKTTQLPKICLELGRGVDGYIGHTQPR 125

Query: 90  RIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           R+A  S+S R+A E   +    VG++IRF     + T +  +T+G+LL
Sbjct: 126 RLAARSVSTRIAEEIGCEMGQEVGFKIRFSDQVSDNTYVKLMTDGILL 173



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  +
Sbjct: 175  EIQQDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSKH 234

Query: 1175 FNRIAKDLLSGST 1187
            F+      +SG T
Sbjct: 235  FSDAPIIEVSGRT 247


>gi|345800514|ref|XP_848932.2| PREDICTED: putative ATP-dependent RNA helicase DHX33 [Canis lupus
           familiaris]
          Length = 634

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 253/443 (57%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 105 EAISDSLLRKYSCIILDEAHERTVHTDVLFGVVKAAQRRRKELRKLPLKVIVMSATMDVD 164

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 165 LFSQYFNG-ASVLYLEGRQHPIQVFY--------TKQPQQD---YLHAALVSVFQIHQEA 212

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 213 PSSQ--DILVFLTGQEEIEAVSKTCRDIAKHLPDGCPSMLVLPLYASLPYAQQLRVFQGA 270

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I++TNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 271 PKGCRKVIIATNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRA 330

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E ++    + + PEI+R ++ S+LL L+ M + +V  F F+  P
Sbjct: 331 GRAGREDSGICYRLYTENEFEKFEKMTVPEIQRCNLASVLLQLLAMKVPNVLTFDFMSKP 390

Query: 597 PAENIESSVRSLTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++++++V  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 391 SPDHMQAAVAQLDLLGALERKDNQLTLTPIGRKMAAFPLEPKFAKTILLSPKFHCTEEIL 450

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  +  D    K WC
Sbjct: 451 TIVSLLSVDSVLYNPPSRRDEVQAMRKKFLSSEGDHITLLNIYRTFKSLGGD----KDWC 506

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           +   +  +      ++R+Q + +
Sbjct: 507 RENFVNSRNMMLAAEVRAQLRDI 529



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 57/81 (70%), Gaps = 3/81 (3%)

Query: 62  DTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRF 118
           +TG GK+TQ+PQYL + G  R   IA TQPRR+A ISL+ RV+ E  ++   LVGY +RF
Sbjct: 25  ETGSGKTTQLPQYLYEGGIGRQGVIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRF 84

Query: 119 EKHRREKTKIVFITEGLLLRQ 139
           +    E T+I F+T+G+LLR+
Sbjct: 85  DDVSSEDTRIKFLTDGMLLRE 105



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E ++    + + PEI+R ++ S+LL L+ M + +V  F F+  P  ++
Sbjct: 335 REDSGICYRLYTENEFEKFEKMTVPEIQRCNLASVLLQLLAMKVPNVLTFDFMSKPSPDH 394

Query: 869 IESSVRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           ++++V  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 395 MQAAVAQLDLLGALERKDNQLTLTPIGRKMAAFPLEPKFAKTILLSPKFHCTEEILTI 452



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 108  SDSLLRKYSCIILDEAHERTVHTDVLFGVVKAAQRRRKELRKLPLKVIVMSATMDVDLFS 167

Query: 1173 TYFN 1176
             YFN
Sbjct: 168  QYFN 171


>gi|421847050|ref|ZP_16280193.1| ATP-dependent RNA helicase HrpA [Citrobacter freundii ATCC 8090 =
           MTCC 1658]
 gi|411771713|gb|EKS55385.1| ATP-dependent RNA helicase HrpA [Citrobacter freundii ATCC 8090 =
           MTCC 1658]
          Length = 1281

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+      +GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGHESQGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLDLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+     LGR LS LPVD  L ++++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARIVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ CK   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCKVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGI 591



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L ++++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARIVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I+D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|365849363|ref|ZP_09389834.1| ATP-dependent helicase HrpA [Yokenella regensburgei ATCC 43003]
 gi|364570007|gb|EHM47629.1| ATP-dependent helicase HrpA [Yokenella regensburgei ATCC 43003]
          Length = 1333

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 157/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    E+KII+ SATI+ E F  
Sbjct: 214 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPELKIIITSATIDPERFSR 273

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR +P+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 274 HFNN-APIIEVSGRTFPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESAGD 326

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 327 ILIFMSGEREIRDTADALSKRDLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 382

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 383 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 442

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 443 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 502

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T+ GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 503 LEELGAITTDEQQTAYKLTAQGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 562

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S ++   C+   + 
Sbjct: 563 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTEYLN 621

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 622 YLRVREWQDIYTQLRQVVKELGI 644



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 435 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 494

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T  GR LS LPVD  L +M++       +   ++
Sbjct: 495 NIQDGVRLLEELGAITTDEQQTAYKLTAQGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 554

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 555 ITSALSIQ--DPRER 567



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 110 NLPVSQKKQDILNAIRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 169

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    VGY++RF  H  + T +  +T+G+LL
Sbjct: 170 RTVANRIAEELQTEPGGCVGYKVRFSDHVSDNTMVKLMTDGILL 213



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    E+KII+ SATI+ E F  
Sbjct: 214  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPELKIIITSATIDPERFSR 273

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 274  HFNNAPIIEVSGRT 287


>gi|72162716|ref|YP_290373.1| ATP-dependent helicase HrpA [Thermobifida fusca YX]
 gi|71916448|gb|AAZ56350.1| ATP-dependent helicase HrpA [Thermobifida fusca YX]
          Length = 1324

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 162/461 (35%), Positives = 249/461 (54%), Gaps = 23/461 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L +YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 181 AEIQQDRMLRAYDTLIIDEAHERSLNIDFILGYLKRLLPRRPDLKVIITSATIDPERFSR 240

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHP-----IVELDRTKSEKLDPGPYIRILSIIDKKYPRT 423
           +F+  A I++V GR YP+++ Y P     +V+ + T +   D      I   +D+     
Sbjct: 241 HFDN-APIVEVSGRTYPVEVRYRPLTAEQVVDDEDTVAATDDRDQIQGICDAVDELCAEG 299

Query: 424 ERGDVLIFMSGISEISSIVRA-----AQEYNEKS-QGWIVLPLHSTLSLEEQDRVFHYAP 477
             GD+L+F+SG  EI     A     A+ Y E S Q   +LPL++ LS  EQ RVF   P
Sbjct: 300 P-GDILVFLSGEREIRDTAEALGKHLARRYPEGSPQAVEILPLYARLSAAEQQRVFQ--P 356

Query: 478 EGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKG 537
            G R+ +++TN+AETS+T+ GIR+VVD G  +   Y    K+  L    IS+ASA QRKG
Sbjct: 357 RGKRRIVLATNVAETSLTVPGIRYVVDPGTARISRYSHRTKVQRLPIERISQASANQRKG 416

Query: 538 RAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 597
           R GR   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGDV +FPF++ P 
Sbjct: 417 RCGRVAEGICIRLYSEEDFLSRPEFTEPEILRTNLASVILQMAALGLGDVEEFPFVDGPD 476

Query: 598 AENIESSVRSLTQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
              ++  V  LT+ GA+    D + R+T+LGR L+ LP+D  LG+M+V       +  V+
Sbjct: 477 RRQVKDGVALLTELGALQPAKDGRHRLTALGRTLAQLPIDPRLGRMVVEADRNGCLHEVM 536

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---K 710
            +AA LS+Q P      +                D L  LN +  +L  ++  +     +
Sbjct: 537 VIAAALSIQDPRERPVEQQQAAAQKHARFAVPDSDFLAYLNLWN-YLNERQQELSGNQFR 595

Query: 711 KWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDA 751
           K C+   +   R  E   + +Q +Q++   G+  +    DA
Sbjct: 596 KMCREEFLNYLRVREWQDIYAQLRQIVQSLGMKVNTAPADA 636



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 79/134 (58%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGDV +FPF++ P   
Sbjct: 419 GRVAEGICIRLYSEEDFLSRPEFTEPEILRTNLASVILQMAALGLGDVEEFPFVDGPDRR 478

Query: 868 NIESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            ++  V  LT+ GA+    D + R+T LGR L+ LP+D  LG+M+V       +  ++++
Sbjct: 479 QVKDGVALLTELGALQPAKDGRHRLTALGRTLAQLPIDPRLGRMVVEADRNGCLHEVMVI 538

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 539 AAALSIQ--DPRER 550



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 65/103 (63%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K EI+  +   +VVI+AG+TG GK+TQ+P+  ++ G     +I  TQPRR+A  
Sbjct: 78  LPVSQKKDEILAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVLGQIGHTQPRRLAAR 137

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ R+A E  +     VGY++RF     + T +  +T+G+LL
Sbjct: 138 TVAARIAEELGTTLGEWVGYKVRFTDVSSDDTLVKLMTDGILL 180



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L +YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 181  AEIQQDRMLRAYDTLIIDEAHERSLNIDFILGYLKRLLPRRPDLKVIITSATIDPERFSR 240

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 241  HFDNAPIVEVSGRT 254


>gi|50546573|ref|XP_500756.1| YALI0B11352p [Yarrowia lipolytica]
 gi|49646622|emb|CAG83003.1| YALI0B11352p [Yarrowia lipolytica CLIB122]
          Length = 1111

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 242/434 (55%), Gaps = 20/434 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  +  Y VL+LDE HER +  D L  ++K       ++++++ SAT+N E F +Y
Sbjct: 551 EALVDPDMDQYSVLMLDEAHERTIATDILFALLKKAAKRRPDLRLVITSATLNAEKFSSY 610

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F+  A II +PGR +P++  +    E D  ++          I +++D    + + GD+L
Sbjct: 611 FDG-APIITIPGRTFPVEEHFAKEPEADYLEAA---------IDTVMDIHVTQ-DPGDIL 659

Query: 430 IFMSGISEISSIVRAAQEYNEKSQG----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F++G  EI S      E ++K +      I+LP++S+L  E Q R+F  AP G RK ++
Sbjct: 660 VFLTGQEEIDSACEILYERSKKIESVAGPLIILPVYSSLPSEMQSRIFDPAPPGSRKVVL 719

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETSITIDG+ +VVD G VK  +YD    M +LQ   IS+A A QR GRAGRTGPG
Sbjct: 720 ATNIAETSITIDGVYYVVDPGFVKINAYDSKLGMDSLQIAPISQAQATQRAGRAGRTGPG 779

Query: 546 VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            CYRLY+E  + + +   + PEI+R ++   +L L  MG+ D+  F F++ PP   + S+
Sbjct: 780 KCYRLYTENSFHNEMLTNTVPEIQRQNLSHTILMLKAMGINDLLNFDFMDPPPHNTLLSA 839

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           +  L    AID +  +T LGR ++D P++  + K+L+     +  + +L++ A+LSVQS 
Sbjct: 840 LNDLHHLSAIDGEGLLTKLGRNMADFPMEPAMAKVLLNSVDHNCAEEILTIVAMLSVQSV 899

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F          +  RK+     GD LT+LN Y  W   K++   SK W     I+++   
Sbjct: 900 FFRPKNMAEKADAKRKKFMDPTGDHLTMLNVYNAW---KRNNC-SKMWTNENFIQDRSMR 955

Query: 725 EVTKLRSQFKQVLG 738
               +R+Q   ++G
Sbjct: 956 RAQDVRNQLVSIMG 969



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 80/114 (70%), Gaps = 3/114 (2%)

Query: 29  MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIAC 85
           M I E + SLPV +++Q++I+ +   +++I+ G+TG GK+TQI QYL +AGF   +RI C
Sbjct: 438 MSIAEVRRSLPVYEFRQDLINAIRDNQIIIVVGETGSGKTTQITQYLYEAGFAKNKRIGC 497

Query: 86  TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           TQPRR+A +S++KRVA E   +    VGY IRFE     +TKI ++T+G+L R+
Sbjct: 498 TQPRRVAAVSVAKRVAEEVGCKVGKEVGYLIRFEDWTCPQTKIKYMTDGMLQRE 551



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 70/120 (58%), Gaps = 2/120 (1%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  + + +   + PEI+R ++   +L L  MG+ D+  F F++ PP  
Sbjct: 775 RTGPGKCYRLYTENSFHNEMLTNTVPEIQRQNLSHTILMLKAMGINDLLNFDFMDPPPHN 834

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            + S++  L    AID +  +T LGR ++D P++  + K+L+  S+ H     +L  +A+
Sbjct: 835 TLLSALNDLHHLSAIDGEGLLTKLGRNMADFPMEPAMAKVLL-NSVDHNCAEEILTIVAM 893



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q +   D  +  Y VL+LDE HER +  D L  ++K       ++++++ SAT+N E F 
Sbjct: 549  QREALVDPDMDQYSVLMLDEAHERTIATDILFALLKKAAKRRPDLRLVITSATLNAEKFS 608

Query: 1173 TYFN 1176
            +YF+
Sbjct: 609  SYFD 612


>gi|292491390|ref|YP_003526829.1| ATP-dependent helicase HrpA [Nitrosococcus halophilus Nc4]
 gi|291579985|gb|ADE14442.1| ATP-dependent helicase HrpA [Nitrosococcus halophilus Nc4]
          Length = 1309

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 153/440 (34%), Positives = 247/440 (56%), Gaps = 20/440 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D FL  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 187 AETQGDRFLEQYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIDTERFSR 246

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN+ A II+V GR YP+++ Y P+   ++ + E+  P     IL  +D+   R   GD+
Sbjct: 247 HFNQ-APIIEVSGRTYPVEVRYRPLCG-EQAQQERDLPQA---ILDAVDE-LSRLGAGDI 300

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+ G  EI     A ++++       +LPL++ LS  EQ+RVF   P   R+ +++TN
Sbjct: 301 LVFLPGEREIRETAEALRKHHPPHTE--ILPLYARLSAAEQNRVF--KPHAGRRIVLATN 356

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI +VVD G  +   Y V +K+  L    IS++SA QR GR GR   GVC 
Sbjct: 357 VAETSLTVPGIHYVVDPGLARLSRYSVRSKVQRLPIEKISQSSANQRAGRCGRIAEGVCI 416

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY E+ +    +++ PEI R ++ S++L +  + LG V  FPF++ PPA+ I   +R L
Sbjct: 417 RLYDEDDFLNRPQFTDPEILRTNLASVILQMKALKLGAVENFPFIDPPPAKMINDGLRLL 476

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GA+D  + +T++GR L+ LP+D  + +M++  + FH ++ +L +A+ LS+Q P    
Sbjct: 477 EELGALDDAQNLTAIGRQLAQLPIDPRISRMVLASNEFHCLNEILIIASALSIQDPRE-- 534

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAY-KEWLGVKKDRV-----RSKKWCKRRGIEEQR 722
             R  D + A  E  + + D  +   +Y K W      R      + + +C+   +   R
Sbjct: 535 --RPLDAQQAADEAHTRYQDERSDFLSYLKLWEDFHHQRAHLSQNKLRAYCREHFLSYLR 592

Query: 723 FYEVTKLRSQFKQVLGDSGL 742
             E   +  Q K ++ + G 
Sbjct: 593 LREWHDIHQQLKLLVTNIGF 612



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 79/130 (60%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLY E+ +    +++ PEI R ++ S++L +  + LG V  FPF++ PPA+
Sbjct: 408 GRIAEGVCIRLYDEDDFLNRPQFTDPEILRTNLASVILQMKALKLGAVENFPFIDPPPAK 467

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I   +R L + GA+D  + +T +GR L+ LP+D  + +M++  + FH ++ +L++  AL
Sbjct: 468 MINDGLRLLEELGALDDAQNLTAIGRQLAQLPIDPRISRMVLASNEFHCLNEILIIASAL 527

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 528 SIQ--DPRER 535



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 3/110 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
            SLPV + ++EI   +   +VVI++G+TG GK+TQ+P+  ++ G      I  TQPRRIA
Sbjct: 82  QSLPVIERREEIGAAIRDHQVVILSGETGSGKTTQLPKICLELGRGVAGMIGHTQPRRIA 141

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
             S++ R+A E  S    LVGY++RF       T I  +T+G+LL +  G
Sbjct: 142 ARSVANRIAEELNSDLGQLVGYKVRFHDRVSPNTYIKLMTDGILLAETQG 191



 Score = 67.4 bits (163), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D FL  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 187  AETQGDRFLEQYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIDTERFSR 246

Query: 1174 YFNRIAKDLLSGST 1187
            +FN+     +SG T
Sbjct: 247  HFNQAPIIEVSGRT 260



 Score = 43.5 bits (101), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 15/114 (13%)

Query: 925  LALNFGAIDSKERVTSLGRFLSDLP-VDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAID 983
            L  N  ++  + +   LG  + + P +D P  KM+  G           L L    GA+D
Sbjct: 436  LRTNLASVILQMKALKLG-AVENFPFIDPPPAKMINDG-----------LRLLEELGALD 483

Query: 984  SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKER 1037
              + +T++GR L+ LP+D  + +M++  + FH ++ +L++  AL+    D +ER
Sbjct: 484  DAQNLTAIGRQLAQLPIDPRISRMVLASNEFHCLNEILIIASALSIQ--DPRER 535



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 13/106 (12%)

Query: 975  LALNFGAIDSKERVTSLGRFLSDLP-VDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAID 1033
            L  N  ++  + +   LG  + + P +D P  KM+  G           L L    GA+D
Sbjct: 436  LRTNLASVILQMKALKLG-AVENFPFIDPPPAKMINDG-----------LRLLEELGALD 483

Query: 1034 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNF 1079
              + +T++GR L+ LP+D  + +M++  + FH ++ +L++  AL+ 
Sbjct: 484  DAQNLTAIGRQLAQLPIDPRISRMVLASNEFHCLNEILIIASALSI 529


>gi|343496794|ref|ZP_08734882.1| ATP-dependent RNA helicase HrpA [Vibrio nigripulchritudo ATCC
           27043]
 gi|342820694|gb|EGU55511.1| ATP-dependent RNA helicase HrpA [Vibrio nigripulchritudo ATCC
           27043]
          Length = 1278

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 155/451 (34%), Positives = 250/451 (55%), Gaps = 25/451 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 221 HFSN-APIIEVSGRTYPVETRYRPLSGDDDNDRDQLE-GIFEAVDELCDEGL-----GDI 273

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N +     ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 274 LIFMNGEREIRDTADALNKRNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 329

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 330 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 389

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  VR L
Sbjct: 390 RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL 449

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D K+R+T  GR L+ LP+D  L +M++    +  +  ++ +A+ LS+Q 
Sbjct: 450 EELGAINDKAKDPKKRLTPAGRQLARLPIDPRLARMVLEAPKYGCLKEIMIIASALSIQD 509

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRV-----RSKKWCKRRGI 718
           P    + +    +   +       D LT +N    W  V+K +      + +K CK+  +
Sbjct: 510 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNL---WEYVQKQQKALSGNQFRKQCKQDYL 566

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL-ITDIPG 748
              R  E   +  Q  Q + +    + D PG
Sbjct: 567 NYLRVREWQDVYFQIHQAMREMDFKLNDEPG 597



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 381 GRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKR 440

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  GR L+ LP+D  L +M++    +  +  +++
Sbjct: 441 NIQDGVRLLEELGAINDKAKDPKKRLTPAGRQLARLPIDPRLARMVLEAPKYGCLKEIMI 500

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 501 IASALSIQ--DPRER 513



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K +I   + + +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 58  LPVSQKKDDIAAAIAEHQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 117

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     + T+I  +T+G+LL
Sbjct: 118 SVANRIAEEMETKLGEFVGYKVRFNDQISDNTQIKLMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 221  HFSNAPIIEVSGRT 234



 Score = 40.0 bits (92), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 184 RKMLKADNAYEIEEEEEEEEGE------RLESMDANEVEFRLKHDPKQV-QVATDNFLSS 236
           R++     A  I EE E + GE      R     ++  + +L  D   + ++  D FL+ 
Sbjct: 112 RRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISDNTQIKLMTDGILLAEIQHDRFLNQ 171

Query: 237 YDILILDEVHERHLYGDFLLGVI 259
           YD +I+DE HER L  DF+LG +
Sbjct: 172 YDTIIIDEAHERSLNIDFILGYL 194


>gi|429110409|ref|ZP_19172179.1| ATP-dependent helicase hrpA [Cronobacter malonaticus 507]
 gi|426311566|emb|CCJ98292.1| ATP-dependent helicase hrpA [Cronobacter malonaticus 507]
          Length = 1133

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 245/445 (55%), Gaps = 25/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 12  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPERFSR 71

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIID--KKYPRTER 425
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L         +I D  ++  R   
Sbjct: 72  HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ--------AIFDAVEELGREGP 122

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GD+LIFMSG  EI        + N       VLPL++ LS  EQ+RVF   P   R+ ++
Sbjct: 123 GDILIFMSGEREIRDTADGLMKLNLPHTE--VLPLYARLSNSEQNRVFQ--PHAGRRIVL 178

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G
Sbjct: 179 ATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEG 238

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 239 ICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGV 298

Query: 606 RSLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           R L + GAI +       ++T LGR LS LPVD  L +M++       +   + + + LS
Sbjct: 299 RLLEELGAITTDAQASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALS 358

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   
Sbjct: 359 IQDPRERPLDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDY 417

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + G+
Sbjct: 418 LNYLRVREWQDIYTQLRQVVKELGI 442



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 233 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 292

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 293 NIQDGVRLLEELGAITTDAQASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 352

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 353 ITSALSIQ--DPRER 365



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 12   AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPERFSR 71

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 72   HFNNAPIIEVSGRT 85


>gi|260941418|ref|XP_002614875.1| hypothetical protein CLUG_04890 [Clavispora lusitaniae ATCC 42720]
 gi|238851298|gb|EEQ40762.1| hypothetical protein CLUG_04890 [Clavispora lusitaniae ATCC 42720]
          Length = 1131

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 154/449 (34%), Positives = 247/449 (55%), Gaps = 24/449 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  +S Y V++LDE HER +  D L  ++K    +  +++++  SAT++ + F  Y
Sbjct: 571  EALLDPQMSKYAVVMLDEAHERTVATDVLFALLKKAARANPDLRVLATSATLDADKFSRY 630

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F     ++ VPGR +P+++ Y          S + +P      L  + + +   + GD+L
Sbjct: 631  FGGCP-VLHVPGRTFPVEIMY----------SREPEPDYVAAALDCVMQIHVAEDSGDIL 679

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +   A  E   K+ G      +VLP +S L  ++Q R+F  AP G RK +
Sbjct: 680  VFLTGQDEIDTCCEAL-EARIKTLGRAVPELLVLPAYSALPPDQQARIFEPAPPGARKVV 738

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETSITIDGIR+VVD G VK  +YD    M +L    IS+A A QR GRAGRT P
Sbjct: 739  LATNIAETSITIDGIRYVVDPGFVKLNAYDPRLGMDSLVVSPISQAQANQRSGRAGRTAP 798

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G C+RLY+EE + + +   + PEI+R +++  +L L  MG+ DV +F F++ PPA     
Sbjct: 799  GKCFRLYTEEAFRTEMRPNTVPEIQRQNLEHTILMLKAMGIDDVLRFEFMDPPPAPTTVQ 858

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            +++ L    A+D    +TS+GR ++D P++  L K ++          VLS+ A+LSVQ+
Sbjct: 859  ALKELYVLDALDENGHLTSMGRRMADFPMEPALAKTVLASVDLSCASDVLSVVAMLSVQN 918

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  ++   S HGD LT+LN ++ W    +   RS+ WC    ++E+  
Sbjct: 919  VFYRPKDKQAAADQRKQRFHSVHGDHLTLLNVFRGW----EQSGRSRSWCAENFVQERAM 974

Query: 724  YEVTKLRSQFKQVLGDSGLITDIPGPDAS 752
            +   ++R Q   ++    L  D+ G DAS
Sbjct: 975  WRAFEVRKQLAAIMVRFRL--DVHGSDAS 1001



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 4/125 (3%)

Query: 19  FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA 78
           + +  K  +   + +++  LPV   +++++  V   + VI+ G+TG GK+TQI QYL + 
Sbjct: 447 YSKSRKNVSKSDLAQSRKRLPVYAMREQLLSAVRDNQFVIVVGETGSGKTTQIVQYLYEE 506

Query: 79  GFQR----IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEG 134
            F R    IACTQPRR+A  S++KRVA E        VGY IRF+      T+I ++T+G
Sbjct: 507 NFHRGDKIIACTQPRRVAAESVAKRVAQEVGCPLGQEVGYTIRFDDRTSPATRIKYMTDG 566

Query: 135 LLLRQ 139
           +L R+
Sbjct: 567 MLQRE 571



 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 63/102 (61%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RT PG C+RLY+EE + + +   + PEI+R +++  +L L  MG+ DV +F F++ PPA 
Sbjct: 795 RTAPGKCFRLYTEEAFRTEMRPNTVPEIQRQNLEHTILMLKAMGIDDVLRFEFMDPPPAP 854

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
               +++ L    A+D    +T++GR ++D P++  L K ++
Sbjct: 855 TTVQALKELYVLDALDENGHLTSMGRRMADFPMEPALAKTVL 896



 Score = 44.3 bits (103), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            D  +S Y V++LDE HER +  D L  ++K    +  +++++  SAT++ + F  YF 
Sbjct: 575  DPQMSKYAVVMLDEAHERTVATDVLFALLKKAARANPDLRVLATSATLDADKFSRYFG 632


>gi|419018010|ref|ZP_13565327.1| ATP-dependent helicase HrpA [Escherichia coli DEC1E]
 gi|377864399|gb|EHU29196.1| ATP-dependent helicase HrpA [Escherichia coli DEC1E]
          Length = 1300

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 245/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI   ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILCTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI   ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILCTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|383860116|ref|XP_003705537.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16-like [Megachile rotundata]
          Length = 1139

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 153/425 (36%), Positives = 240/425 (56%), Gaps = 19/425 (4%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F T+F   A  
Sbjct: 556 LDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDSSKFSTFFGNAA-T 614

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
            ++PGR +P+++ +       +   E        ++L I     PR+  GDVL+FM G  
Sbjct: 615 FQIPGRTFPVEVLHA------KNPVEDYVDAAVKQVLQI--HLQPRS--GDVLVFMPGQE 664

Query: 437 EISSIVRAAQEY---NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETS 493
           +I     A +E     E +    +LP++S L  + Q ++F  +  GLRKC+V+TNIAETS
Sbjct: 665 DIEVTCEALKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRSEGGLRKCVVATNIAETS 724

Query: 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553
           +T+DGI FVVDSG  K   Y+    M  LQ + +S+A+A+QR GRAGRTGPG CYRLY+ 
Sbjct: 725 LTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRAGRAGRTGPGTCYRLYTR 784

Query: 554 EQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHG 612
            QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +NI +S+  L   G
Sbjct: 785 RQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQLWILG 844

Query: 613 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRD 672
           A+D   R+T LGR +++ P+D P  +ML+  S       +L + ++LSV S F     R+
Sbjct: 845 ALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSIFYRPKGRE 904

Query: 673 PDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQ 732
            D ++AR++ +    D LT LN Y +W    K    S  WC    I  +   +V ++R Q
Sbjct: 905 EDSDSAREKFQVPESDHLTYLNVYSQW----KANGYSSSWCNDHFIHAKAMRKVREVRQQ 960

Query: 733 FKQVL 737
            +++L
Sbjct: 961 LEEIL 965



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 85/137 (62%), Gaps = 15/137 (10%)

Query: 18  DFKQKEKFSTLMK------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGC 65
           DFK  +K++  +K            I+  + SLPV   +QE+++ + +  VV+I G+TG 
Sbjct: 413 DFKAGQKYARHIKGDEVTGEAKYRSIQHQRRSLPVFAVRQELLNVIRENSVVVIVGETGS 472

Query: 66  GKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR 122
           GK+TQ+ QYL + G+ R   I CTQPRR+A +S++KRV+ E  +   + VGY IRFE   
Sbjct: 473 GKTTQLTQYLHEDGYSRYGIIGCTQPRRVAAMSVAKRVSDEMATTLGDKVGYAIRFEDCT 532

Query: 123 REKTKIVFITEGLLLRQ 139
            + T I ++T+G+LLR+
Sbjct: 533 SKDTVIKYMTDGILLRE 549



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+  QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +
Sbjct: 772 RTGPGTCYRLYTRRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQD 831

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           NI +S+  L   GA+D   R+T LGR +++ P+D P  +ML+  S       +L++   L
Sbjct: 832 NILNSLYQLWILGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSML 891

Query: 928 NFGAI 932
           +  +I
Sbjct: 892 SVPSI 896



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F T+F   A  
Sbjct: 556  LDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDSSKFSTFFGNAATF 615

Query: 1182 LLSGST 1187
             + G T
Sbjct: 616  QIPGRT 621


>gi|359299973|ref|ZP_09185812.1| ATP-dependent RNA helicase HrpA [Haemophilus [parainfluenzae] CCUG
           13788]
 gi|402305319|ref|ZP_10824378.1| ATP-dependent helicase HrpA [Haemophilus sputorum HK 2154]
 gi|400376432|gb|EJP29319.1| ATP-dependent helicase HrpA [Haemophilus sputorum HK 2154]
          Length = 1304

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 158/475 (33%), Positives = 254/475 (53%), Gaps = 32/475 (6%)

Query: 279 YDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFL 338
           Y V   D++ E  L      G++        E+  D +L+ YD L++DE HER L+ DF+
Sbjct: 162 YKVRFNDQVSENTLVKLMTDGIL------LAEIQTDRYLNQYDTLIIDEAHERSLNNDFI 215

Query: 339 LGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDR 398
           LG +K +L    ++K+I+ SATI++E F  +FN  A II+V GR +P+++ Y PIVE + 
Sbjct: 216 LGYLKQILAKRPDLKVIITSATIDVERFSRHFNN-APIIEVSGRTFPVEVRYRPIVEEE- 273

Query: 399 TKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVL 458
                 D      IL+ +D+      RGD+LIFM+G  EI     A Q+   +     +L
Sbjct: 274 ------DQDQLQGILNAVDELQAEG-RGDILIFMNGEREIRDTAEALQKQELRFTE--IL 324

Query: 459 PLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAK 518
           PL++ LS EEQ R+F   P GL + I++TN+AETS+TI  I++V+D+G  +   Y    K
Sbjct: 325 PLYARLSAEEQQRIFR--PSGLNRVILATNVAETSLTIPNIKYVIDTGTARISRYSYRTK 382

Query: 519 MSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLS 578
           +  L    IS+ASA QRKGR GRT  G+C RLYSEE ++   E++ PEI R ++ S++L 
Sbjct: 383 VQRLPIEPISQASANQRKGRCGRTSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQ 442

Query: 579 LVCMGLGDVRKFPFLEAPPAENIESSVRSL-------TQHGAIDSKERVTSLGRFLSDLP 631
           +  +GL D+  FPF+++P    I+  +R L       T+      K  +T +GR L+ LP
Sbjct: 443 MNSLGLSDITAFPFVDSPDIRQIQDGIRLLEELQAFKTRKTKFGEKRELTQIGRQLAQLP 502

Query: 632 VDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLT 691
           +D  LG+M++  +    +  V+ + + LS+Q P      +    +   +       D L 
Sbjct: 503 IDPRLGRMVIEAAKNGSLHEVMMIVSALSIQDPRERPQEKQQASDEKHRRFADKDSDFLA 562

Query: 692 VLNAY----KEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
            +N +     +   + K++ R  K C++  +   R  E   +  Q +  + + GL
Sbjct: 563 FVNLWHYIQTQQKALSKNQFR--KQCQKDFLNYLRVREWQDIYHQLRLSVREMGL 615



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF+++P    
Sbjct: 405 RTSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMNSLGLSDITAFPFVDSPDIRQ 464

Query: 869 IESSVRSL-------TQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  +R L       T+      K  +T +GR L+ LP+D  LG+M++  +    +  ++
Sbjct: 465 IQDGIRLLEELQAFKTRKTKFGEKRELTQIGRQLAQLPIDPRLGRMVIEAAKNGSLHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 MIVSALSIQ--DPRER 538



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+  ++EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRRIA  
Sbjct: 83  LPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELGRGVNGLIGHTQPRRIAAR 142

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  S+  + VGY++RF     E T +  +T+G+LL
Sbjct: 143 SVANRIAEELGSEMGSTVGYKVRFNDQVSENTLVKLMTDGILL 185



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +L    ++K+I+ SATI++E F  
Sbjct: 186  AEIQTDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILAKRPDLKVIITSATIDVERFSR 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 44.3 bits (103), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++ TD +L+ YD LI+DE HER L  DF+LG +
Sbjct: 186 AEIQTDRYLNQYDTLIIDEAHERSLNNDFILGYL 219


>gi|424799747|ref|ZP_18225289.1| ATP-dependent helicase hrpA [Cronobacter sakazakii 696]
 gi|423235468|emb|CCK07159.1| ATP-dependent helicase hrpA [Cronobacter sakazakii 696]
          Length = 1301

 Score =  256 bits (655), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 245/445 (55%), Gaps = 25/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIID--KKYPRTER 425
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L         +I D  ++  R   
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ--------AIFDAVEELGREGP 290

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GD+LIFMSG  EI        + N       VLPL++ LS  EQ+RVF   P   R+ ++
Sbjct: 291 GDILIFMSGEREIRDTADGLMKLNLPHTE--VLPLYARLSNSEQNRVFQ--PHAGRRIVL 346

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G
Sbjct: 347 ATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEG 406

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 407 ICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGV 466

Query: 606 RSLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           R L + GAI +       ++T LGR LS LPVD  L +M++       +   + + + LS
Sbjct: 467 RLLEELGAITTDAQASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALS 526

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   
Sbjct: 527 IQDPRERPLDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDY 585

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + G+
Sbjct: 586 LNYLRVREWQDIYTQLRQVVKELGI 610



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    VGY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCVGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|307188795|gb|EFN73387.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
           [Camponotus floridanus]
          Length = 1136

 Score =  256 bits (655), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 150/427 (35%), Positives = 244/427 (57%), Gaps = 23/427 (5%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F  +F   A  
Sbjct: 553 LDRYSVVIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDCSKFSAFFGNAA-T 611

Query: 377 IKVPGRLYPIQLEY--HPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
            ++PGR +P+++ +  +P+        E        +++ I    + + + GDVL+FM G
Sbjct: 612 FQIPGRTFPVEVLHAKNPV--------EDYVDAAVKQVMQI----HLQPKSGDVLVFMPG 659

Query: 435 ISEISSIVRAAQEY---NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAE 491
             +I       +E     E +    +LP++S L  + Q ++F  +  GLRKC+V+TNIAE
Sbjct: 660 QEDIEVTCEVLKERLAEIESAPSLSILPIYSQLPSDLQAKIFQRSEGGLRKCVVATNIAE 719

Query: 492 TSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLY 551
           TS+T+DGI FVVDSG  K   Y+    M  LQ + +S+A+A+QR+GRAGRTGPG CYRLY
Sbjct: 720 TSLTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRQGRAGRTGPGQCYRLY 779

Query: 552 SEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQ 610
           +  QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +NI +S+  L  
Sbjct: 780 TRRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQLWI 839

Query: 611 HGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAF 670
            GA+D   R+T+LGR +++ P+D P  +ML+  S  +    +L + ++LSV S F     
Sbjct: 840 LGALDHTGRLTALGRQMAEFPLDPPQCQMLIVASQLNCTADILIIVSMLSVPSIFYRPKG 899

Query: 671 RDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLR 730
           R+ D ++AR++ +    D LT LN Y +W    K    S  WC    I  +   +V ++R
Sbjct: 900 REEDSDSAREKFQVPESDHLTYLNVYNQW----KANGYSSSWCNDHFIHAKAMRKVREVR 955

Query: 731 SQFKQVL 737
           SQ +++L
Sbjct: 956 SQLEEIL 962



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 84/137 (61%), Gaps = 15/137 (10%)

Query: 18  DFKQKEKFSTLM------------KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGC 65
           DFK  +K++  +             I+  + SLPV   +QE+++ + +  VVII G+TG 
Sbjct: 410 DFKAGQKYARHIGAGEVTGEARHRSIQHQRRSLPVFAVRQELLNVIRENSVVIIVGETGS 469

Query: 66  GKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR 122
           GK+TQ+ QYL + G+ R   I CTQPRR+A +S++KRV+ E  +   + VGY IRFE   
Sbjct: 470 GKTTQLTQYLHEDGYSRYGIIGCTQPRRVAAMSVAKRVSDEMATALGDKVGYAIRFEDCT 529

Query: 123 REKTKIVFITEGLLLRQ 139
            + T I ++T+G+LLR+
Sbjct: 530 SKDTIIKYMTDGILLRE 546



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 74/125 (59%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+  QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +
Sbjct: 769 RTGPGQCYRLYTRRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQD 828

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           NI +S+  L   GA+D   R+T LGR +++ P+D P  +ML+  S  +    +L++   L
Sbjct: 829 NILNSLYQLWILGALDHTGRLTALGRQMAEFPLDPPQCQMLIVASQLNCTADILIIVSML 888

Query: 928 NFGAI 932
           +  +I
Sbjct: 889 SVPSI 893



 Score = 47.8 bits (112), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F  +F   A  
Sbjct: 553  LDRYSVVIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDCSKFSAFFGNAATF 612

Query: 1182 LLSGST 1187
             + G T
Sbjct: 613  QIPGRT 618


>gi|427791153|gb|JAA61028.1| Putative mrna splicing factor atp-dependent rna helicase, partial
           [Rhipicephalus pulchellus]
          Length = 658

 Score =  256 bits (655), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 160/455 (35%), Positives = 253/455 (55%), Gaps = 28/455 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH-----STAEVKIILMSATINIE 364
           E   D  L  Y V+VLDE HER ++ D L GV+K         +   +KI++MSAT++++
Sbjct: 174 EALLDPLLRRYAVVVLDEAHERTVNTDILFGVVKSAQKERQRLNMTPLKIVVMSATMDVD 233

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424
            F  YFN  A +  + GR + I++ Y    + D   S        + +  I   + P   
Sbjct: 234 HFSHYFNN-APVYTLEGRQHHIEMMYAVKPQEDYVFS------ALVTVFQIHRNQGP--- 283

Query: 425 RGDVLIFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL 480
            GD+L+F +G  EI S+V+AA+E     +   Q  +VLPL++ L    Q RVF  A +  
Sbjct: 284 -GDILVFCTGQEEIESVVQAAKETVLQLDTAEQNLLVLPLYAALPSSMQLRVFEPAKKNW 342

Query: 481 RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540
           RK I STNIAETSITI GI++VVD+G VK+ +Y     +  L+   ISKA A QR GRAG
Sbjct: 343 RKVIFSTNIAETSITIPGIKYVVDTGVVKQRTYQPGTGLEVLKVRKISKAQAWQRAGRAG 402

Query: 541 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 600
           R   G+CYRLY++ QY  + E+S PEI+R S+  ++L ++ +G+ DV  F F++ P  ++
Sbjct: 403 RECSGICYRLYTKVQYEAMREHSIPEIQRCSLSGVVLQMLALGIEDVFAFDFMDKPSEKH 462

Query: 601 IESSVRSLTQHGAIDSKERV--TSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
           +  ++  L Q GA++ KE V  T+LG+ ++  P++    K+++        D +L++ ++
Sbjct: 463 LTEALDKLHQLGAVEKKEEVKLTALGQKMAAFPLEPRFAKIILCSKELGCTDEILTIISI 522

Query: 659 LSVQSP-FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRG 717
           LS  S  + N   R+   E  RK  +SN GD + +LN YK +  VK +    K WCK   
Sbjct: 523 LSGDSVLYFNEKHRERAAEVWRK-FQSNEGDHVMLLNVYKAYKSVKGN----KAWCKENF 577

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDAS 752
           + ++   +V ++RSQ   +   +G+     G D++
Sbjct: 578 VSKKNMMKVIEIRSQLADLCVKAGVPLRSCGQDSA 612



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY++ QY  + E+S PEI+R S+  ++L ++ +G+ DV  F F++ P  ++
Sbjct: 403 RECSGICYRLYTKVQYEAMREHSIPEIQRCSLSGVVLQMLALGIEDVFAFDFMDKPSEKH 462

Query: 869 IESSVRSLTQHGAIDSKERV--TTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           +  ++  L Q GA++ KE V  T LG+ ++  P++    K+++        D +L +
Sbjct: 463 LTEALDKLHQLGAVEKKEEVKLTALGQKMAAFPLEPRFAKIILCSKELGCTDEILTI 519



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 15  TYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQY 74
           T  D ++ E+    M++ + + +LP+   ++E++  V +   VI+ G+T CGK+TQ+PQY
Sbjct: 77  TVEDGEEVERRRIKMQLLKQRRALPIYPVRRELVRVVRQRDCVILIGETACGKTTQLPQY 136

Query: 75  LVQAGFQR---IACTQPRRIACISLSKR 99
           L  AG  +   I  TQPRR+A I+++ R
Sbjct: 137 LHAAGLTKQGIIGITQPRRMAAITVADR 164



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH-----STAEVKIILMSATINIELFHT 1173
            D  L  Y V+VLDE HER ++ D L GV+K         +   +KI++MSAT++++ F  
Sbjct: 178  DPLLRRYAVVVLDEAHERTVNTDILFGVVKSAQKERQRLNMTPLKIVVMSATMDVDHFSH 237

Query: 1174 YFNRIAKDLLSG 1185
            YFN      L G
Sbjct: 238  YFNNAPVYTLEG 249


>gi|260768509|ref|ZP_05877443.1| ATP-dependent helicase HrpA [Vibrio furnissii CIP 102972]
 gi|260616539|gb|EEX41724.1| ATP-dependent helicase HrpA [Vibrio furnissii CIP 102972]
          Length = 1307

 Score =  256 bits (655), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 145/393 (36%), Positives = 230/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD +++DE HER L+ DF+LG +K LL    ++KII+ SATI+ E F  
Sbjct: 190 AEIQHDRYLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKIIITSATIDPERFSN 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D +  ++L+ G +  +  + D+       GD+
Sbjct: 250 HFNG-APIIEVSGRTYPVETRYRPLAGEDESDHDQLE-GIFEAVDELCDEGL-----GDI 302

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  +   K +   ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 303 LIFMNGEREIRDTADALAK--RKLRDTEIVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 358

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 359 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVEEGICI 418

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR L
Sbjct: 419 RLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLL 478

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D K+R+T +GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 479 EELGAINADASDPKKRLTEVGRKLARLPIDPRLARMVLEAPRYGCLKEVMVIAAGLSIQD 538

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT++N +
Sbjct: 539 PRERPSDKQQSSDDKHRRFFDEESDFLTLVNVW 571



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 80/135 (59%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 410 GRVEEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 469

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T +GR L+ LP+D  L +M++    +  +  +++
Sbjct: 470 NIQDGVRLLEELGAINADASDPKKRLTEVGRKLARLPIDPRLARMVLEAPRYGCLKEVMV 529

Query: 923 LDLALNFGAIDSKER 937
           +   L+    D +ER
Sbjct: 530 IAAGLSIQ--DPRER 542



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIARAIQAHQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     ++T+I  +T+G+LL
Sbjct: 147 SVANRIADEMETELGGFVGYKVRFNDQISDQTQIKLMTDGILL 189



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD +++DE HER L+ DF+LG +K LL    ++KII+ SATI+ E F  
Sbjct: 190  AEIQHDRYLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKIIITSATIDPERFSN 249

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 250  HFNGAPIIEVSGRT 263


>gi|334187649|ref|NP_196805.2| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
            [Arabidopsis thaliana]
 gi|332004458|gb|AED91841.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
            [Arabidopsis thaliana]
          Length = 1255

 Score =  256 bits (655), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 154/450 (34%), Positives = 248/450 (55%), Gaps = 24/450 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D+ L  Y V+V+DE HER L+ D L G++K ++    + K+I+ SAT+N + F  +
Sbjct: 662  ETLKDSDLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSNF 721

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F  +  I  +PGR +P+ + Y       +T  E        + ++I     P    GD+L
Sbjct: 722  FGSVP-IFNIPGRTFPVNILYS------KTPCEDYVEAAVKQAMTIHITSPP----GDIL 770

Query: 430  IFMSGISEISSIVRAAQEYNEK--------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLR 481
            IFM+G  EI +   + +E  E+            ++LP++S L  + Q ++F    +G R
Sbjct: 771  IFMTGQDEIEAACFSLKERMEQLVSSSSREITNLLILPIYSQLPADLQAKIFQKPEDGAR 830

Query: 482  KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
            KCIV+TNIAETS+T+DGI +V+D+G  K   ++    M  LQ F IS+A+++QR GRAGR
Sbjct: 831  KCIVATNIAETSLTVDGIYYVIDTGYGKMKVFNPRMGMDALQVFPISRAASDQRAGRAGR 890

Query: 542  TGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 600
            TGPG CYRLY+E  Y + +     PEI+R ++ +++L L  + + ++  F F++ PP EN
Sbjct: 891  TGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQEN 950

Query: 601  IESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            I +S+  L   GA+++   +T LG  + + P+D PL KML+ G     ID VL++ ++LS
Sbjct: 951  ILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGERLDCIDEVLTIVSMLS 1010

Query: 661  VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEE 720
            V S F     R  + + AR++      D LT+LN Y++W    K+      WC    ++ 
Sbjct: 1011 VPSVFFRPKERAEESDAAREKFFVPESDHLTLLNVYQQW----KEHDYRGDWCNDHYLQV 1066

Query: 721  QRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
            +   +  ++RSQ   +L    +     GPD
Sbjct: 1067 KGLRKAREVRSQLLDILKQLKIELRSCGPD 1096



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 83/139 (59%), Gaps = 16/139 (11%)

Query: 17  LDFKQKEKFSTLMK-------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDT 63
           +DFK + KF+  MK             + E +  LP+   + E++  + + +V+++ G+T
Sbjct: 524 VDFKGEAKFAQHMKKGEAVSEFAMSKTMAEQRQYLPIFSVRDELLQVIRENQVIVVVGET 583

Query: 64  GCGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           G GK+TQ+ QYL + G+     + CTQPRR+A +S++KRV+ E  ++  + +GY IRFE 
Sbjct: 584 GSGKTTQLTQYLHEDGYTINGIVGCTQPRRVAAMSVAKRVSEEMETELGDKIGYAIRFED 643

Query: 121 HRREKTKIVFITEGLLLRQ 139
                T I ++T+G+LLR+
Sbjct: 644 VTGPNTVIKYMTDGVLLRE 662



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y + +     PEI+R ++ +++L L  + + ++  F F++ PP E
Sbjct: 890  RTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQE 949

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            NI +S+  L   GA+++   +T LG  + + P+D PL KML+ G     ID +L +
Sbjct: 950  NILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGERLDCIDEVLTI 1005



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D+ L  Y V+V+DE HER L+ D L G++K ++    + K+I+ SAT+N + F  +F  +
Sbjct: 666  DSDLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSNFFGSV 725


>gi|384499238|gb|EIE89729.1| hypothetical protein RO3G_14440 [Rhizopus delemar RA 99-880]
          Length = 1030

 Score =  256 bits (655), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 152/433 (35%), Positives = 247/433 (57%), Gaps = 33/433 (7%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L+SY  +++DE HER L  D L G+IK +     ++K+++ SAT+N + F  YF+  A I
Sbjct: 502 LASYSCMIIDEAHERTLSTDILFGLIKDIARFRPDLKLLISSATMNAQKFSEYFDD-API 560

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
             +PGR YP+++ Y    E +  ++         ++L+I    +    RGD+L+F++G  
Sbjct: 561 FNIPGRPYPVEIYYTKAPEANYLRA------AITQVLTI----HVTQSRGDILVFLTGQD 610

Query: 437 EISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
           EI +    + +A +    K    IV P+++ L  E Q R+F   PEG RK I++TNIAET
Sbjct: 611 EIEAAQEGLTQACKALGSKISELIVCPIYANLPSEMQSRIFEPTPEGARKVILATNIAET 670

Query: 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
           SIT+DG+ +V+D G  K+ S++    M  L     S+AS+ QR GRAGRTGPG C+RL++
Sbjct: 671 SITVDGVSYVIDPGFNKQKSFNPRTGMEALTVVPCSRASSTQRAGRAGRTGPGKCFRLFT 730

Query: 553 EEQ-YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQ- 610
           +   Y+ + E + PEI+RV++ +++L L  +G+ D+  F FL+ PP E+  + +RSL+Q 
Sbjct: 731 QWAFYNEMEENTVPEIQRVNLSNVVLLLKSLGINDLVNFDFLD-PPVED--TMIRSLSQL 787

Query: 611 --HGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
              GA++ +  +T LGR +++ P+D  + K +V    +   D V+S+ A+LS QS     
Sbjct: 788 YALGALNDRAELTKLGRRMAEFPIDPCMSKAIVAAEKYECTDEVVSICAMLSEQSSLL-- 845

Query: 669 AFRDPD----CETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
            +R  D     +TA + L    GD LT+LN + +W+        S +WC    I+ +   
Sbjct: 846 -YRPKDKKILADTAHQNLVKQGGDHLTLLNIWNQWVETD----YSVQWCYENFIQVRTLE 900

Query: 725 EVTKLRSQFKQVL 737
            V  +R Q  Q+L
Sbjct: 901 RVRNVRDQLVQLL 913



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 76/113 (67%), Gaps = 4/113 (3%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR----IACT 86
           I + + SLP+ QY+ E+I  +   +V+II G+TG GK+TQ+PQYL +AG+ +    I CT
Sbjct: 383 IDDVRKSLPIYQYRDELIQAIHDYQVLIIVGETGSGKTTQLPQYLYEAGYTKNGMKIGCT 442

Query: 87  QPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           QPRR+A +S++ RVA E        VGY IRFE    EKT + ++T+G+LLR+
Sbjct: 443 QPRRVAAMSVASRVAEEMGVHLGQEVGYSIRFEDCTSEKTAVKYMTDGMLLRE 495



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 74/117 (63%), Gaps = 7/117 (5%)

Query: 809 RTGPGVCYRLYSEEQ-YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG C+RL+++   Y+ + E + PEI+RV++ +++L L  +G+ D+  F FL+ PP E
Sbjct: 719 RTGPGKCFRLFTQWAFYNEMEENTVPEIQRVNLSNVVLLLKSLGINDLVNFDFLD-PPVE 777

Query: 868 NIESSVRSLTQH---GAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           +  + +RSL+Q    GA++ +  +T LGR +++ P+D  + K +V    +   D ++
Sbjct: 778 D--TMIRSLSQLYALGALNDRAELTKLGRRMAEFPIDPCMSKAIVAAEKYECTDEVV 832



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            L+SY  +++DE HER L  D L G+IK +     ++K+++ SAT+N + F  YF+
Sbjct: 502  LASYSCMIIDEAHERTLSTDILFGLIKDIARFRPDLKLLISSATMNAQKFSEYFD 556


>gi|375131047|ref|YP_004993147.1| ATP-dependent helicase HrpA [Vibrio furnissii NCTC 11218]
 gi|315180221|gb|ADT87135.1| ATP-dependent helicase HrpA [Vibrio furnissii NCTC 11218]
          Length = 1307

 Score =  256 bits (655), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 145/393 (36%), Positives = 230/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD +++DE HER L+ DF+LG +K LL    ++KII+ SATI+ E F  
Sbjct: 190 AEIQHDRYLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKIIITSATIDPERFSN 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP++  Y P+   D +  ++L+ G +  +  + D+       GD+
Sbjct: 250 HFNG-APIIEVSGRTYPVETRYRPLAGEDESDHDQLE-GIFEAVDELCDEGL-----GDI 302

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  +   K +   ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 303 LIFMNGEREIRDTADALAK--RKLRDTEIVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 358

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 359 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVEEGICI 418

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR L
Sbjct: 419 RLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLL 478

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D K+R+T +GR L+ LP+D  L +M++    +  +  V+ +AA LS+Q 
Sbjct: 479 EELGAINADASDPKKRLTEVGRKLARLPIDPRLARMVLEAPRYGCLKEVMVIAAGLSIQD 538

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT++N +
Sbjct: 539 PRERPSDKQQSSDDKHRRFFDEESDFLTLVNVW 571



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 80/135 (59%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 410 GRVEEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 469

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T +GR L+ LP+D  L +M++    +  +  +++
Sbjct: 470 NIQDGVRLLEELGAINADASDPKKRLTEVGRKLARLPIDPRLARMVLEAPRYGCLKEVMV 529

Query: 923 LDLALNFGAIDSKER 937
           +   L+    D +ER
Sbjct: 530 IAAGLSIQ--DPRER 542



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q + +I   +   +VVI+AG+TG GK+TQ+P+   + G   F  I  TQPRR+A  
Sbjct: 87  LPVSQKRDDIAKAIQAHQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E+T+I  +T+G+LL
Sbjct: 147 SVANRIADEMETELGGFVGYKVRFNDQISEQTQIKLMTDGILL 189



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD +++DE HER L+ DF+LG +K LL    ++KII+ SATI+ E F  
Sbjct: 190  AEIQHDRYLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKIIITSATIDPERFSN 249

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 250  HFNGAPIIEVSGRT 263


>gi|345863431|ref|ZP_08815642.1| ATP-dependent RNA helicase HrpA [endosymbiont of Tevnia jerichonana
           (vent Tica)]
 gi|345125509|gb|EGW55378.1| ATP-dependent RNA helicase HrpA [endosymbiont of Tevnia jerichonana
           (vent Tica)]
          Length = 1286

 Score =  256 bits (655), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 159/457 (34%), Positives = 253/457 (55%), Gaps = 13/457 (2%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 162 AEIQQDPYLNQYDTLIIDEAHERSLNIDFLLGYLQQLLPKRPDLKLIITSATIDPDRFAK 221

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F R A +I+V GR +P++L Y P+ E      E+ DP     I+  +D+   R +RGD+
Sbjct: 222 HF-RDAPVIEVSGRTFPVELYYRPLEE--EGAHEREDPMQQA-IVDAVDE-LSRIDRGDI 276

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIF+SG  EI       +++  K     VLPL++ L   +Q R+F   P G R+ +++TN
Sbjct: 277 LIFLSGEREIRETAETLRKH--KLPLTEVLPLYARLGPADQARIF--KPHGARRIVLATN 332

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GIR+V+D+G  +   Y   +K+  L    +S+ASA QR GR GR   GVC 
Sbjct: 333 VAETSLTVPGIRYVIDAGFARISRYSHRSKVQRLPVERVSQASANQRMGRCGRVAKGVCI 392

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +     ++ PEI R ++ S++L +  +G G++  FPF++ P +  I+   R L
Sbjct: 393 RLYSEEDFESRVAFTEPEILRTNLASVILQMKQLGFGEIEAFPFVDPPDSRLIKDGYRVL 452

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GAI   +++T LGR L+ LPVD  +G+ML+  +  H +  V+ +AA LSVQ P    
Sbjct: 453 EEIGAIGGDKQITRLGRQLARLPVDPRIGRMLLGAAHSHCLREVMVIAAALSVQDPRDRP 512

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKK--DRVRSKKWCKRRGIEEQRFYEV 726
             +    + A         D +  L  ++     +K   R + +K+C+   +   R  E 
Sbjct: 513 MDKQQQADQAHALFRHEQSDFIGYLQLWEHLQEQRKHLSRAKFRKYCRSIFLSSTRVQEW 572

Query: 727 TKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHG 763
            ++ +Q +  L D G   +    +AS     RAL  G
Sbjct: 573 QEIHTQLRMQLHDMGFKEN--SEEASYEQIHRALLSG 607



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 73/121 (60%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLYSEE +     ++ PEI R ++ S++L +  +G G++  FPF++ P + 
Sbjct: 384 GRVAKGVCIRLYSEEDFESRVAFTEPEILRTNLASVILQMKQLGFGEIEAFPFVDPPDSR 443

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I+   R L + GAI   +++T LGR L+ LPVD  +G+ML+  +  H +  ++++  AL
Sbjct: 444 LIKDGYRVLEEIGAIGGDKQITRLGRQLARLPVDPRIGRMLLGAAHSHCLREVMVIAAAL 503

Query: 928 N 928
           +
Sbjct: 504 S 504



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 16/122 (13%)

Query: 30  KIRETQNSLPVAQYKQEI-----IDTVLK----ERVVIIAGDTGCGKSTQIPQYLVQ--- 77
           ++ + Q SLP  ++  E+     +D + K     +VV++ G+TG GKSTQ+P+  +    
Sbjct: 42  RLAQRQESLPTPEFPPELPITTRLDDIRKLIAENQVVVLCGETGSGKSTQLPKICLDLGR 101

Query: 78  --AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
             AG+  I  TQPRRIA  SL+ RVA E  S+  + VGY++RF  H    + +  +T+G+
Sbjct: 102 GVAGY--IGHTQPRRIAARSLAARVAAELGSETGHAVGYKVRFHDHVGPNSHVKLMTDGI 159

Query: 136 LL 137
           LL
Sbjct: 160 LL 161



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 162  AEIQQDPYLNQYDTLIIDEAHERSLNIDFLLGYLQQLLPKRPDLKLIITSATIDPDRFAK 221

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 222  HFRDAPVIEVSGRT 235


>gi|298712520|emb|CBJ26788.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 711

 Score =  256 bits (655), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 245/443 (55%), Gaps = 29/443 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D FL+ Y  +VLDE HER L  D L+G+IK +L +  ++++++MSAT++ E F  Y
Sbjct: 158 EAMNDPFLAKYKCIVLDEAHERTLATDVLMGLIKEVLKNRPDMRVVVMSATLDAEKFQKY 217

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F+  A ++KVPGR +P+++ Y P  E D  ++        +R +  I K     + GDVL
Sbjct: 218 FDN-APLLKVPGRTFPVEIFYTPTPERDYVEAA-------VRTVVQIHKC---EDPGDVL 266

Query: 430 IFMSGISEISSIVRAAQEYNEKSQG------WIVLPLHSTLSLEEQDRVFHYAPEGL--- 480
           +F++G  EI    RA +   EKSQ         V PL+S+L    Q ++F  AP      
Sbjct: 267 LFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPG 326

Query: 481 ----RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
               RK +VSTN+AETS+TIDGI +VVD G  K+  Y+   ++ +L    IS+ASA+QR 
Sbjct: 327 GPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRS 386

Query: 537 GRAGRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEA 595
           GRAGRT PG C+RLY+E+ +   L E + PEI R  + + +L+L+ +G+ D+  F F++ 
Sbjct: 387 GRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDP 446

Query: 596 PPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           P  E +  ++  L   GA+D +  +T LG  +S+LP+D  L K+L+    +   + VLS+
Sbjct: 447 PAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSI 506

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKR 715
            A+LSV   F          + A+ E     GD LT+LNAY  +    K    SK WC  
Sbjct: 507 VAMLSVPQVFMRPKEAQKAADEAKAEFAHIDGDHLTLLNAYHAY----KQNGGSKDWCFS 562

Query: 716 RGIEEQRFYEVTKLRSQFKQVLG 738
             I  +       +R Q  +++G
Sbjct: 563 NFINSRSMVSAENVREQLGRLMG 585



 Score =  103 bits (258), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 76/114 (66%), Gaps = 5/114 (4%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRI-----AC 85
           I E +  LPV Q+  +++D V   + V++ G+TG GK+TQIPQ+LV+AG+  I     AC
Sbjct: 45  ILEKRKKLPVHQFLDDLMDKVKNNQTVVVEGETGSGKTTQIPQFLVEAGYGAIGEGCVAC 104

Query: 86  TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           TQPRR+A +S++ RV+ E      ++VGY IRFE     +T + F+T+G+LLR+
Sbjct: 105 TQPRRVAAMSIANRVSDEMDVNLGDIVGYSIRFEIKNGPRTILNFMTDGMLLRE 158



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 63/103 (61%), Gaps = 1/103 (0%)

Query: 808 SRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RT PG C+RLY+E+ +   L E + PEI R  + + +L+L+ +G+ D+  F F++ P  
Sbjct: 390 GRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAP 449

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
           E +  ++  L   GA+D +  +T LG  +S+LP+D  L K+L+
Sbjct: 450 ETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLL 492



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 18/99 (18%)

Query: 1096 ESMDAN-------EVEFRLKHDPKQV-----------QVAADNFLSSYDVLVLDEIHERH 1137
            + MD N        + F +K+ P+ +           +   D FL+ Y  +VLDE HER 
Sbjct: 121  DEMDVNLGDIVGYSIRFEIKNGPRTILNFMTDGMLLREAMNDPFLAKYKCIVLDEAHERT 180

Query: 1138 LHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            L  D L+G+IK +L +  ++++++MSAT++ E F  YF+
Sbjct: 181  LATDVLMGLIKEVLKNRPDMRVVVMSATLDAEKFQKYFD 219


>gi|156933867|ref|YP_001437783.1| ATP-dependent RNA helicase HrpA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532121|gb|ABU76947.1| hypothetical protein ESA_01693 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1301

 Score =  256 bits (655), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 245/445 (55%), Gaps = 25/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIID--KKYPRTER 425
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L         +I D  ++  R   
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ--------AIFDAVEELGREGP 290

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GD+LIFMSG  EI        + N       VLPL++ LS  EQ+RVF   P   R+ ++
Sbjct: 291 GDILIFMSGEREIRDTADGLMKLNLPHTE--VLPLYARLSNSEQNRVFQ--PHAGRRIVL 346

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G
Sbjct: 347 ATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEG 406

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 407 ICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGV 466

Query: 606 RSLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           R L + GAI +       ++T LGR LS LPVD  L +M++       +   + + + LS
Sbjct: 467 RLLEELGAITTDAQASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALS 526

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   
Sbjct: 527 IQDPRERPLDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDY 585

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + G+
Sbjct: 586 LNYLRVREWQDIYTQLRQVVKELGI 610



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    VGY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCVGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|240948613|ref|ZP_04752986.1| ATP-dependent RNA helicase HrpA [Actinobacillus minor NM305]
 gi|240297121|gb|EER47692.1| ATP-dependent RNA helicase HrpA [Actinobacillus minor NM305]
          Length = 1304

 Score =  256 bits (655), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 149/443 (33%), Positives = 245/443 (55%), Gaps = 22/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +L    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILAKRPDLKVIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y PIVE +       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEE-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+   +     +LPL++ LS  EQ R+F+  P  L + I++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQELRHTE--ILPLYARLSAAEQQRIFN--PSNLNRIILATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRISEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   +++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  +R L
Sbjct: 413 RLYSEEDFNARPQFTDPEILRTNLASVILQMTALGLTDIASFPFVDAPDQRHIQDGIRLL 472

Query: 609 TQHGAIDSKE-------RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +  A + K+        +T +GR L+ LP+D  LG+M++  +    +  V+ + + LS+
Sbjct: 473 EELQAFEFKKTKNGEIRELTQIGRQLAQLPIDPRLGRMVIEAAKNGSLHEVMMIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  +N +      +K+  ++  +K C++  + 
Sbjct: 533 QDPRERPQEKQQSADDKHRRFADKESDFLAFVNLWHFIQEQQKELTKNQFRKLCQKDYLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   +  Q +  + + GL
Sbjct: 593 YLRVREWQDIYHQLRLAVREMGL 615



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   +++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RISEGICIRLYSEEDFNARPQFTDPEILRTNLASVILQMTALGLTDIASFPFVDAPDQRH 464

Query: 869 IESSVRSLTQHGAIDSKE-------RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  +R L +  A + K+        +T +GR L+ LP+D  LG+M++  +    +  ++
Sbjct: 465 IQDGIRLLEELQAFEFKKTKNGEIRELTQIGRQLAQLPIDPRLGRMVIEAAKNGSLHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 MIVSALSIQ--DPRER 538



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACI 94
           LPV+  ++EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRRIA  
Sbjct: 83  LPVSARREEILKLIAEHQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRIAAR 142

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  S+  + +GY++RF     + T +  +T+G+LL
Sbjct: 143 SVATRIAEELKSELGSTIGYKVRFNDQISDNTLVKLMTDGILL 185



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +L    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILAKRPDLKVIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D +L+ YD LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYL 219


>gi|410636527|ref|ZP_11347121.1| ATP-dependent helicase HrpA [Glaciecola lipolytica E3]
 gi|410144139|dbj|GAC14326.1| ATP-dependent helicase HrpA [Glaciecola lipolytica E3]
          Length = 1300

 Score =  256 bits (655), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 152/441 (34%), Positives = 248/441 (56%), Gaps = 21/441 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+ AD +L+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 178 AEIQADRYLNQYDTLIIDEAHERSLNIDFILGYLKQLLPKRPDLKLIITSATIDPERFSK 237

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRTERG 426
           +FN  A II+V GR YP+++ Y P+ E D    +         I  IID  K+  R +RG
Sbjct: 238 HFNN-APIIQVSGRSYPVEVRYKPLQESDEDSDQ---------IQGIIDAVKELEREKRG 287

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+L+F+SG  EI     A     +K +G  VLPL++ LS+ EQ+R+F     G R+ +++
Sbjct: 288 DILVFLSGEREIRDTADAL--IKQKFKGTEVLPLYARLSVAEQNRIFQ--SHGSRRIVLA 343

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D G  +   Y   +K+  L    IS+ASA QR GR GR   G+
Sbjct: 344 TNVAETSLTVPGIKYVIDPGFARLSRYSYRSKVQRLPIEAISQASANQRAGRCGRVSEGI 403

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSE+ +    E++ PEI R ++ S++L ++ + LG ++ FPF++ P    I    R
Sbjct: 404 CIRLYSEDDFLSRPEFTDPEILRTNLASVILQMLSLKLGSIQDFPFVQPPDNRFINDGFR 463

Query: 607 SLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            L +  A++ ++    +T  GR ++ LPVD    +M+V G   + +  ++ +AA LS+Q 
Sbjct: 464 LLEELTAVEKQQGKLSLTETGRQIAKLPVDPRYARMVVEGGRNNCVSELIIIAAGLSIQD 523

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQ 721
           P      +    +   +   +   D + +LN ++++   +K    +  +KWC+   I   
Sbjct: 524 PRERPQDKRAAADQQHEIYANKQSDFIALLNLWQDFKQQQKALTANQLRKWCRNHFINYL 583

Query: 722 RFYEVTKLRSQFKQVLGDSGL 742
           R  E   + SQ K+ + + G 
Sbjct: 584 RMREWQDVVSQLKKSIVEIGF 604



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACI 94
           LPV++++Q+I D +   +VVIIAG+TG GK+TQIP+  +Q G      I  TQPRR+A  
Sbjct: 75  LPVSEHRQDIQDAIANNQVVIIAGETGSGKTTQIPKICLQLGRGVDGLIGHTQPRRLAAR 134

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ R+A E  +     VG+++RF     + T +  +T+G+LL
Sbjct: 135 TVAGRIAEELDTTVGQKVGFKVRFSDQVGDDTYVKLMTDGILL 177



 Score = 73.6 bits (179), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L ++ + LG ++ FPF++ P    
Sbjct: 398 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMLSLKLGSIQDFPFVQPPDNRF 457

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
           I    R L +  A++ ++    +T  GR ++ LPVD    +M+V G   + +  ++++  
Sbjct: 458 INDGFRLLEELTAVEKQQGKLSLTETGRQIAKLPVDPRYARMVVEGGRNNCVSELIIIAA 517

Query: 926 ALNFGAIDSKER 937
            L+    D +ER
Sbjct: 518 GLSIQ--DPRER 527



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++ AD +L+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 178  AEIQADRYLNQYDTLIIDEAHERSLNIDFILGYLKQLLPKRPDLKLIITSATIDPERFSK 237

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG +
Sbjct: 238  HFNNAPIIQVSGRS 251


>gi|410927113|ref|XP_003977010.1| PREDICTED: putative ATP-dependent RNA helicase DHX33-like [Takifugu
           rubripes]
          Length = 681

 Score =  256 bits (655), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 256/468 (54%), Gaps = 32/468 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH-----STAEVKIILMSATINIE 364
           E   D  L  Y V+VLDE HER ++ D L  V+K         S   +K+I+MSAT++++
Sbjct: 152 EAMGDPLLLRYTVVVLDEAHERTVNTDVLFSVVKTAQRRRREFSKVPLKVIVMSATMDVD 211

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSIIDKKYPR 422
           LF  YFN+ + ++ + GR +PIQ+ Y        TK  + D   Y+   ++SI       
Sbjct: 212 LFSEYFNK-SPVLYLEGRQHPIQIYY--------TKQPQSD---YLHAALVSIFQIHQEA 259

Query: 423 TERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               D+L+FM+G  EI ++ R     A+   +     +V PL+++L   +Q RVF  AP+
Sbjct: 260 PPSHDILVFMTGQEEIEALARTCRDIAKHLPDSCGPMVVFPLYASLPPVQQLRVFQPAPK 319

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
           G RK I+STNIAETS+TI  I++V+D+G VK   ++  + +  L    +SKA A QR GR
Sbjct: 320 GCRKVILSTNIAETSVTISRIKYVIDTGMVKAKRFNPGSGLEVLAVQRVSKAQAWQRAGR 379

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
           AGR   G CYRLY+EE++  L   + PEI+R ++  ++L L  +G+ DV  F F+  PP 
Sbjct: 380 AGREDSGSCYRLYTEEEFDNLVPMTVPEIQRCNLAGVMLQLTALGIPDVMNFDFMSKPPP 439

Query: 599 ENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           E + S+V  L   GA++ KE    +T+LG+ ++  P++    K ++  + +   + +LS+
Sbjct: 440 EAVHSAVEHLELLGAVEMKEDQVHLTALGKKMARFPLEPKYAKTILLSTNYFCSEEILSI 499

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKR 715
            ++LSV +   N   R  +   ARK+  S+ GD +T+LN Y+ +  V  +    K+WC+ 
Sbjct: 500 VSLLSVDNVLYNPPARREEVLAARKKFISSEGDHMTLLNIYRAFKKVSGN----KEWCRE 555

Query: 716 RGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHG 763
             +  +    V ++++Q K +     L  +  G D   +S  R L HG
Sbjct: 556 NFVNSRSMGLVKEVQAQLKDICLKLNLKLESCGGDT--ASIRRCLAHG 601



 Score =  103 bits (256), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 5/125 (4%)

Query: 21  QKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF 80
           +KE  ++ + I+  Q  LP+ Q K ++++ +      I+ G+TG GK+TQIPQYL +AG 
Sbjct: 33  RKENATSPLDIQRKQ--LPIYQAKLQLLNQLRTLHSAILIGETGSGKTTQIPQYLYEAGI 90

Query: 81  QR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            R   IA TQPRR+A ISL+ RVA E  +Q   LVGY +RFE     +TK+ F+T+G+LL
Sbjct: 91  GRQGIIAITQPRRVAAISLAGRVAEEKRTQLGKLVGYTVRFEDVTSSETKLKFMTDGMLL 150

Query: 138 RQDSG 142
           R+  G
Sbjct: 151 REAMG 155



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 3/109 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G CYRLY+EE++  L   + PEI+R ++  ++L L  +G+ DV  F F+  PP E 
Sbjct: 382 REDSGSCYRLYTEEEFDNLVPMTVPEIQRCNLAGVMLQLTALGIPDVMNFDFMSKPPPEA 441

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMF 914
           + S+V  L   GA++ KE    +T LG+ ++  P++    K ++  + +
Sbjct: 442 VHSAVEHLELLGAVEMKEDQVHLTALGKKMARFPLEPKYAKTILLSTNY 490



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 12/114 (10%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      EE+  + G+      R E + ++E + +   D   ++ A  D  L  Y V+
Sbjct: 106  AISLAGRVAEEKRTQLGKLVGYTVRFEDVTSSETKLKFMTDGMLLREAMGDPLLLRYTVV 165

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLH-----STAEVKIILMSATINIELFHTYFNR 1177
            VLDE HER ++ D L  V+K         S   +K+I+MSAT++++LF  YFN+
Sbjct: 166  VLDEAHERTVNTDVLFSVVKTAQRRRREFSKVPLKVIVMSATMDVDLFSEYFNK 219


>gi|395836679|ref|XP_003791280.1| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase
           DHX33 [Otolemur garnettii]
          Length = 764

 Score =  256 bits (655), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 153/443 (34%), Positives = 258/443 (58%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 235 EAISDSMLRKYSCVILDEAHERTIHTDVLFGVVKTAQKKRKELGKLPLKVIVMSATMDVD 294

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 295 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQHD---YLHAALVSVFQIHQEA 342

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 343 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPSMVVLPLYASLPYAQQLRVFQGA 400

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 401 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 460

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 461 GRAGREDSGICYRLYTEEEFEKFEKMTMPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 520

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ KE    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 521 SPDHIQAAIAQLDLLGALEHKEDQLTLTPIGRKMAAFPLEPKFAKTILLSPKFHCTEEIL 580

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +    K+   +K+WC
Sbjct: 581 TIVSLLSVDSVLHNPPSRREEVQGVRKKFISSEGDHITLLNIYRTF----KNTGGNKEWC 636

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    VT++R+Q + +
Sbjct: 637 KENFVNSKNMTLVTEVRAQLRDI 659



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL +AG  R   IA TQPRR+
Sbjct: 128 RRSLPIFQARGQLLAQLRNLDCAVLIGETGSGKTTQIPQYLYEAGISRQGIIAVTQPRRV 187

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  +    LVGY +RF+    E TKI F+T+G+LLR+
Sbjct: 188 AAISLATRVSDEKRTVLGKLVGYTVRFDDVTSEDTKIKFLTDGMLLRE 235



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 465 REDSGICYRLYTEEEFEKFEKMTMPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 524

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ KE    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 525 IQAAIAQLDLLGALEHKEDQLTLTPIGRKMAAFPLEPKFAKTILLSPKFHCTEEILTI 582



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 238  SDSMLRKYSCVILDEAHERTIHTDVLFGVVKTAQKKRKELGKLPLKVIVMSATMDVDLFS 297

Query: 1173 TYFN 1176
             YFN
Sbjct: 298  QYFN 301


>gi|449308176|ref|YP_007440532.1| ATP-dependent RNA helicase HrpA [Cronobacter sakazakii SP291]
 gi|449098209|gb|AGE86243.1| ATP-dependent RNA helicase HrpA [Cronobacter sakazakii SP291]
          Length = 1282

 Score =  256 bits (655), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 245/445 (55%), Gaps = 25/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIID--KKYPRTER 425
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L         +I D  ++  R   
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ--------AIFDAVEELGREGP 271

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GD+LIFMSG  EI        + N       VLPL++ LS  EQ+RVF   P   R+ ++
Sbjct: 272 GDILIFMSGEREIRDTADGLMKLNLPHTE--VLPLYARLSNSEQNRVFQ--PHAGRRIVL 327

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G
Sbjct: 328 ATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEG 387

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 388 ICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGV 447

Query: 606 RSLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           R L + GAI +       ++T LGR LS LPVD  L +M++       +   + + + LS
Sbjct: 448 RLLEELGAITTDAQASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALS 507

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRG 717
           +Q P      +    +   +       D L  +N +  +LG ++  + S ++   C+   
Sbjct: 508 IQDPRERPLDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDY 566

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + G+
Sbjct: 567 LNYLRVREWQDIYTQLRQVVKELGI 591



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDAQASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    VGY++RF  H  + T +  +T+G+LL
Sbjct: 117 RTVANRIAEELQTEPGGCVGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|325923897|ref|ZP_08185497.1| ATP-dependent helicase HrpA [Xanthomonas gardneri ATCC 19865]
 gi|325545633|gb|EGD16887.1| ATP-dependent helicase HrpA [Xanthomonas gardneri ATCC 19865]
          Length = 1373

 Score =  256 bits (655), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 154/441 (34%), Positives = 246/441 (55%), Gaps = 26/441 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLVKRPDLKLIVTSATIDTERFAQ 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPI-----VELDRTKSEKLDPGPYIR--ILSIIDKKYP 421
           +FN  A +I V GR +P+++ Y P+      + D  +    D    +   I++ ID+   
Sbjct: 240 HFND-APVISVEGRTFPVEVRYRPLEGDAGTDSDGEQGNGRDGERTVNDAIVAAIDEITR 298

Query: 422 RTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG 479
              RGDVL+F+ G  EI    ++   ++Y E      V+PL++ LS ++QDRVF+  P  
Sbjct: 299 IDPRGDVLMFLPGEREIRDAHQSLERRKYRETE----VVPLYARLSAQDQDRVFNPGPR- 353

Query: 480 LRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRA 539
            R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA QR GR 
Sbjct: 354 -RRLVLATNVAETSLTVPRIRYVVDPGFARIKRYSPRQKLDRLHIEPISQASANQRMGRC 412

Query: 540 GRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 599
           GR   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 413 GRIAEGICYRLYAEADFAARPAFTDPEIRRASLSGVILRMLQLGLGRIEDFPFLEAPDER 472

Query: 600 NIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVL 659
            +    + L + GAID + R+T+ GR ++ LPVD+ L +MLV       +  ++ +A+ L
Sbjct: 473 AVADGWQQLLELGAIDGERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIVIASFL 532

Query: 660 SVQSPFTNRAFRDPDCETARKELESNHGDP----LTVLNAYKEWLGVKKDRVRSK--KWC 713
            +Q P      R P+   A     +   D     + +L  ++ +  V ++  +SK   WC
Sbjct: 533 GIQDPRE----RPPEAREAADNAHALFADARSEFVGILRLWEAYRQVHEELTQSKLRDWC 588

Query: 714 KRRGIEEQRFYEVTKLRSQFK 734
            R  +   R  E  +L  Q +
Sbjct: 589 NRHFLGFLRMREWRELHRQLR 609



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  ++    ++ PEIRR S+  ++L ++ +GLG +  FPFLEAP   
Sbjct: 413 GRIAEGICYRLYAEADFAARPAFTDPEIRRASLSGVILRMLQLGLGRIEDFPFLEAPDER 472

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    + L + GAID + R+T  GR ++ LPVD+ L +MLV       +  M++  +A 
Sbjct: 473 AVADGWQQLLELGAIDGERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIV--IAS 530

Query: 928 NFGAIDSKER 937
             G  D +ER
Sbjct: 531 FLGIQDPRER 540



 Score = 70.5 bits (171), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
             LP+A+  + II  +   +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA
Sbjct: 75  TQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ RVA E  +     VG+Q+RF     E ++I F+T+G+LL
Sbjct: 135 ARAVAARVAEELKTPLGTTVGFQVRFTDRVGEDSRIKFMTDGILL 179



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 46/63 (73%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LS+YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLVKRPDLKLIVTSATIDTERFAQ 239

Query: 1174 YFN 1176
            +FN
Sbjct: 240  HFN 242



 Score = 44.7 bits (104), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LS+YD +I+DE HER L  DFLLG +
Sbjct: 180 AEIASDRWLSAYDTIIVDEAHERSLNIDFLLGYL 213



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 977  LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
            L  GAID + R+T+ GR ++ LPVD+ L +MLV       +  M++  +A   G  D +E
Sbjct: 482  LELGAIDGERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIV--IASFLGIQDPRE 539

Query: 1037 R 1037
            R
Sbjct: 540  R 540


>gi|429121040|ref|ZP_19181691.1| ATP-dependent helicase hrpA [Cronobacter sakazakii 680]
 gi|426324484|emb|CCK12428.1| ATP-dependent helicase hrpA [Cronobacter sakazakii 680]
          Length = 1301

 Score =  256 bits (654), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 245/445 (55%), Gaps = 25/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIID--KKYPRTER 425
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L         +I D  ++  R   
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ--------AIFDAVEELGREGP 290

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GD+LIFMSG  EI        + N       VLPL++ LS  EQ+RVF   P   R+ ++
Sbjct: 291 GDILIFMSGEREIRDTADGLMKLNLPHTE--VLPLYARLSNSEQNRVFQ--PHAGRRIVL 346

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G
Sbjct: 347 ATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEG 406

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 407 ICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGV 466

Query: 606 RSLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           R L + GAI +       ++T LGR LS LPVD  L +M++       +   + + + LS
Sbjct: 467 RLLEELGAITTDAQASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALS 526

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   
Sbjct: 527 IQDPRERPLDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDY 585

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + G+
Sbjct: 586 LNYLRVREWQDIYTQLRQVVKELGI 610



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    VGY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCVGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|389840876|ref|YP_006342960.1| ATP-dependent RNA helicase HrpA [Cronobacter sakazakii ES15]
 gi|387851352|gb|AFJ99449.1| ATP-dependent RNA helicase HrpA [Cronobacter sakazakii ES15]
          Length = 1301

 Score =  256 bits (654), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 245/445 (55%), Gaps = 25/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIID--KKYPRTER 425
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L         +I D  ++  R   
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ--------AIFDAVEELGREGP 290

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GD+LIFMSG  EI        + N       VLPL++ LS  EQ+RVF   P   R+ ++
Sbjct: 291 GDILIFMSGEREIRDTADGLMKLNLPHTE--VLPLYARLSNSEQNRVFQ--PHAGRRIVL 346

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G
Sbjct: 347 ATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEG 406

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 407 ICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGV 466

Query: 606 RSLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           R L + GAI +       ++T LGR LS LPVD  L +M++       +   + + + LS
Sbjct: 467 RLLEELGAITTDAQASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALS 526

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   
Sbjct: 527 IQDPRERPLDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDY 585

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + G+
Sbjct: 586 LNYLRVREWQDIYTQLRQVVKELGI 610



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    VGY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCVGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|406030640|ref|YP_006729531.1| ATP-dependent RNA helicase hrpA [Mycobacterium indicus pranii MTCC
           9506]
 gi|405129187|gb|AFS14442.1| ATP-dependent RNA helicase hrpA [Mycobacterium indicus pranii MTCC
           9506]
          Length = 1305

 Score =  256 bits (654), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 168/506 (33%), Positives = 254/506 (50%), Gaps = 36/506 (7%)

Query: 278 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337
            Y V   D + +R L      G++        E+  D  L  YD L+LDE HER L+ DF
Sbjct: 146 GYSVRFTDRVSDRTLIKLMTDGIL------LAEIQRDRRLLRYDTLILDEAHERSLNIDF 199

Query: 338 LLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPI---- 393
           LLG ++ LL    ++++I+ SATI  + F  +F+  A II+V GR YP+++ Y P+    
Sbjct: 200 LLGYLRELLPRRPDLRVIVTSATIEPQRFAAHFDN-APIIEVSGRTYPVEVRYRPLEVVV 258

Query: 394 ------------VELDRTKSEKLDPGPYIRILSIID--KKYPRTERGDVLIFMSGISEIS 439
                        E+ RT++          I +I+D  ++      GDVL+F+SG  EI 
Sbjct: 259 PSASTDDPDDPDDEIVRTETRD-------EIEAIVDAIRELEAEPPGDVLVFLSGEREIR 311

Query: 440 SIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGI 499
               A            VLPL++ L   EQ +VF  AP   R+ +++TN+AETS+T+ GI
Sbjct: 312 DTAEALTFLTNGPGHTEVLPLYARLPTAEQQKVF--APHTGRRVVLATNVAETSLTVPGI 369

Query: 500 RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLL 559
           R+V+D G  +   Y    K+  L    IS+ASA QR GR GR  PGVC RLYSE+ ++  
Sbjct: 370 RYVIDPGNARISRYSRRLKVQRLPIEPISQASAAQRAGRCGRVAPGVCIRLYSEQDFAAR 429

Query: 560 AEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKER 619
             Y+ PEI R ++ ++LL +  + +GD+ KFPFL+ P   ++   V+ L + GA D +  
Sbjct: 430 PRYTEPEILRTNLAAVLLQMAALQIGDIEKFPFLDPPDRRSVRDGVQLLVELGAFDGQGA 489

Query: 620 VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETAR 679
           +T LGR L+ LPVD  LG+M++       +  +L LAA LS+  P    + R+       
Sbjct: 490 ITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAALSIPDPRERPSDREEAAREKH 549

Query: 680 KELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEVTKLRSQFKQVL 737
                 H D ++ LN +    G +K    S  ++ C+   +   R  E   L  Q   + 
Sbjct: 550 ARFADEHSDFMSYLNLWHYLRGQRKSLSGSAFRRMCRSEFLHYLRIREWQDLVGQLGSIA 609

Query: 738 GDSGLITDIPGPDASLSSRERALRHG 763
           GD G++ D  G  A  +    AL  G
Sbjct: 610 GDLGIVEDTAGEPADPARVHAALVAG 635



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PGVC RLYSE+ ++    Y+ PEI R ++ ++LL +  + +GD+ KFPFL+ P   
Sbjct: 410 GRVAPGVCIRLYSEQDFAARPRYTEPEILRTNLAAVLLQMAALQIGDIEKFPFLDPPDRR 469

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           ++   V+ L + GA D +  +T LGR L+ LPVD  LG+M++       +  ML+L  AL
Sbjct: 470 SVRDGVQLLVELGAFDGQGAITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAAL 529

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 530 SIP--DPRER 537



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRR 90
           T   LPV+  +QEI D +   +VV+IAG+TG GK+TQ+P+  ++AG      I  TQPRR
Sbjct: 64  TYPDLPVSARRQEIADAIRGNQVVVIAGETGSGKTTQLPKICLEAGSGIRGTIGHTQPRR 123

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  ++++R+A E  S     VGY +RF     ++T I  +T+G+LL
Sbjct: 124 LAARTVAQRIADELASPLGEAVGYSVRFTDRVSDRTLIKLMTDGILL 170



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L+LDE HER L+ DFLLG ++ LL    ++++I+ SATI  + F  
Sbjct: 171  AEIQRDRRLLRYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLRVIVTSATIEPQRFAA 230

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 231  HFDNAPIIEVSGRT 244



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query: 1023 LDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHH 1082
            + L +  GA D +  +T LGR L+ LPVD  LG+M++       +  ML+L  AL+    
Sbjct: 475  VQLLVELGAFDGQGAITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAALSIPDP 534

Query: 1083 SEEEEEEEAGER 1094
             E   + E   R
Sbjct: 535  RERPSDREEAAR 546


>gi|354543259|emb|CCE39977.1| hypothetical protein CPAR2_100150 [Candida parapsilosis]
          Length = 977

 Score =  256 bits (654), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 155/433 (35%), Positives = 234/433 (54%), Gaps = 20/433 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  +S Y +++LDE HER +  D L  ++K    +   +KII+ SAT++ E F  +
Sbjct: 427 EALTDPEMSKYAIIMLDEAHERTIATDVLFALLKKAALANPNLKIIVTSATLDSEKFSKF 486

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           FN    I+ +PGR YP+++      E+D   S  LD    I I             GD+L
Sbjct: 487 FNNCP-ILTIPGRTYPVEVLCTKEPEMDYL-SAALDTVIQIHI---------SEPNGDIL 535

Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F++G  EI +    +   A+   + +   I+LP++S L  E Q R+F   P G RK I+
Sbjct: 536 VFLTGQEEIDTSCEVLAERAKVLGDSAPELIILPVYSALPAEMQARIFEPTPPGSRKVIL 595

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETSITIDGI +VVD G VK   YD  + M TL+   ISKA A QR GRAGRTGPG
Sbjct: 596 ATNIAETSITIDGIYYVVDPGYVKLNGYDPKSGMDTLKITPISKAQANQRSGRAGRTGPG 655

Query: 546 VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            CYRLY+E+ Y   +   + PEI+R ++   +L L  +G+ DV  F F++ P   ++ +S
Sbjct: 656 KCYRLYTEQSYIKEMLPNTVPEIQRQNLSHTILMLKAIGIDDVLHFEFMDPPSKNSMMTS 715

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           +  L    A+D    +T LGR ++D P++  L K L+     +  + +L++ A+LSVQ+ 
Sbjct: 716 LEDLYMLEALDDDGELTLLGRKMADFPMEPALAKTLIQSVDLNCTEEILTIVAMLSVQTV 775

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F     +    +  +    S  GD LT+LN Y  W   K     SK WC+   I+E+   
Sbjct: 776 FHRPKEKQNLADQRKARFHSTKGDHLTLLNVYNRWCASK----YSKDWCRDNFIQERSMR 831

Query: 725 EVTKLRSQFKQVL 737
              ++R Q + ++
Sbjct: 832 HAKEVRRQLQTIM 844



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 12/134 (8%)

Query: 18  DFKQKEKFSTLMK-----IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           ++K+  K ++  K     I E + SLPV   +  +I  +   + V+I G+TG GK+TQI 
Sbjct: 294 EWKKSHKLTSFQKPTKLTIEEQKKSLPVYDMRANLIQMIRDNQFVVIVGETGSGKTTQIV 353

Query: 73  QYLVQAGFQR-------IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREK 125
           QY+ + G          I CTQPRR+A  S++KRV+ E      + VGY +RF+     K
Sbjct: 354 QYIYEEGLNVVQGESRIIGCTQPRRVAATSVAKRVSEEVGCTLGDEVGYNVRFDDKTTSK 413

Query: 126 TKIVFITEGLLLRQ 139
           T I ++T+G+L R+
Sbjct: 414 TMIKYMTDGMLERE 427



 Score = 73.6 bits (179), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E+ Y   +   + PEI+R ++   +L L  +G+ DV  F F++ P   
Sbjct: 651 RTGPGKCYRLYTEQSYIKEMLPNTVPEIQRQNLSHTILMLKAIGIDDVLHFEFMDPPSKN 710

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
           ++ +S+  L    A+D    +T LGR ++D P++  L K L+
Sbjct: 711 SMMTSLEDLYMLEALDDDGELTLLGRKMADFPMEPALAKTLI 752



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 38/70 (54%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR 1177
             D  +S Y +++LDE HER +  D L  ++K    +   +KII+ SAT++ E F  +FN 
Sbjct: 430  TDPEMSKYAIIMLDEAHERTIATDVLFALLKKAALANPNLKIIVTSATLDSEKFSKFFNN 489

Query: 1178 IAKDLLSGST 1187
                 + G T
Sbjct: 490  CPILTIPGRT 499


>gi|425072610|ref|ZP_18475716.1| ATP-dependent RNA helicase hrpA [Proteus mirabilis WGLW4]
 gi|404597280|gb|EKA97786.1| ATP-dependent RNA helicase hrpA [Proteus mirabilis WGLW4]
          Length = 1298

 Score =  256 bits (654), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 156/446 (34%), Positives = 252/446 (56%), Gaps = 26/446 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 176 AELQQDKLLLQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSK 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPI----VELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424
           +FN+ A II+V GR YP+++ Y PI    ++ D+  +E         I+  ID+   R  
Sbjct: 236 HFNQ-APIIEVSGRTYPVEVRYRPIGGDALDSDKDMTEG--------IIDAIDE-LSRES 285

Query: 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            GD+LIFMSG  EI     A  +   +     VLPL + LS  EQ+R+F   P   R+ I
Sbjct: 286 AGDILIFMSGEREIRDTAEALNKLQLRHTE--VLPLFARLSNSEQNRIFQ--PHTGRRII 341

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TN+AETS+T+ GI++V+D+G  +   Y    K+  L    IS+ASA+QRKGR GR   
Sbjct: 342 LATNVAETSLTVPGIKYVIDTGYARISRYSYRTKVQRLPIEPISQASADQRKGRCGRVSD 401

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G+C RLYSE+ +   A+++ PEI R ++ S++L +  +GLGD+  FPF++AP   NI+  
Sbjct: 402 GICIRLYSEDDFISRAQFTDPEILRTNLASVILQMTSIGLGDISGFPFVQAPDKRNIQDG 461

Query: 605 VRSLTQHGAI----DSKE--RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
           VR L + GA+    D+K   R+T +G+ L+ LP+D  L +M++    +  +  ++ + +V
Sbjct: 462 VRLLEELGALQEGTDNKGAYRLTPMGKQLAQLPIDPRLARMVLEARKYGAVRELMVITSV 521

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRR 716
           LS+Q P      +    +   +  +    D L++LN +      +K+   S  +K C++ 
Sbjct: 522 LSIQDPRERPMDKQQASDEKHRRFQDKDSDFLSLLNLWDYLKTQQKELSHSQFRKHCRQE 581

Query: 717 GIEEQRFYEVTKLRSQFKQVLGDSGL 742
            +   R  E   + +Q +QV+ + G 
Sbjct: 582 FLNFMRVREWQDVYTQLRQVVKELGF 607



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 81/135 (60%), Gaps = 8/135 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +   A+++ PEI R ++ S++L +  +GLGD+  FPF++AP   N
Sbjct: 398 RVSDGICIRLYSEDDFISRAQFTDPEILRTNLASVILQMTSIGLGDISGFPFVQAPDKRN 457

Query: 869 IESSVRSLTQHGAI----DSKE--RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           I+  VR L + GA+    D+K   R+T +G+ L+ LP+D  L +M++    +  +  +++
Sbjct: 458 IQDGVRLLEELGALQEGTDNKGAYRLTPMGKQLAQLPIDPRLARMVLEARKYGAVRELMV 517

Query: 923 LDLALNFGAIDSKER 937
           +   L+    D +ER
Sbjct: 518 ITSVLSIQ--DPRER 530



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIAC 93
           +LPV+Q K+ I + +   +VVIIAG+TG GK+TQIP+  ++ G      I  TQPRR+A 
Sbjct: 72  NLPVSQKKEAIYNAIKDNQVVIIAGETGSGKTTQIPKICLELGRGVKGYIGHTQPRRLAA 131

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S+++R+A+E  +     VGY++RF  H  + T +  +T+G+LL
Sbjct: 132 RSVAERIAHELNTTLGESVGYKVRFSDHVGDNTLVKLMTDGILL 175



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 176  AELQQDKLLLQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSK 235

Query: 1174 YFNRIAKDLLSGST 1187
            +FN+     +SG T
Sbjct: 236  HFNQAPIIEVSGRT 249


>gi|170717719|ref|YP_001784790.1| ATP-dependent RNA helicase HrpA [Haemophilus somnus 2336]
 gi|168825848|gb|ACA31219.1| ATP-dependent helicase HrpA [Haemophilus somnus 2336]
          Length = 1303

 Score =  256 bits (654), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 162/493 (32%), Positives = 269/493 (54%), Gaps = 31/493 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+ +D FL+ YD+L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 184 AEIQSDRFLNQYDMLIIDEAHERSLNNDFILGYLKQLLPQRPDLKVIITSATIDVERFSQ 243

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y PIVE +       D      IL+ +++     + GD+
Sbjct: 244 HFNH-APIIEVSGRTYPVEVRYRPIVEEE-------DQDQLQGILNAVEE-LQAEKVGDI 294

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIF++G  EI     A Q+ + K     +LPL + LS +EQ+++FH  P  L++ +++TN
Sbjct: 295 LIFLNGEREIRDTAEALQKLDLKHTE--ILPLFARLSAQEQNKIFH--PSNLKRIVLATN 350

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 351 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 410

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ ++    ++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 411 RLYSEDDFNNRPAFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGMKLL 470

Query: 609 TQHGAID-------SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +  A +        K ++T++G+ L+ LPVD  L KML+    F  +  ++ + A LS+
Sbjct: 471 EELQAFEWKKNKQGEKRQLTAIGKQLAQLPVDPRLAKMLLSAVQFSCLHELMIIVAALSI 530

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKK--DRVRSKKWCKRRGIE 719
           Q P      +    +   +       D L  LN +      +K   + + ++ C++  + 
Sbjct: 531 QDPRERPQEKQQSADDKHRRFADKKSDFLAYLNLWNYIQEQQKILSKNQFRRLCRKEYLN 590

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
             R  E   +  Q +  + + GL   I   +A  +    AL  G   LL  I  K+ E  
Sbjct: 591 YLRIREWQDIYHQIRLTVREMGL--PINSHEAEYAQIHTALLSG---LLSHIGFKENE-- 643

Query: 780 PKRRKMLKADNAY 792
             +++ L A NA+
Sbjct: 644 --KQQYLGARNAH 654



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 78/122 (63%), Gaps = 4/122 (3%)

Query: 19  FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA 78
           F+  ++ S + KI   QN LPV Q K EI   + + +VV+IAG+TG GK+TQ+P+  ++ 
Sbjct: 63  FRFLQRQSAVQKIEFPQN-LPVNQKKAEIQKLIREHQVVVIAGETGSGKTTQLPKMCLEL 121

Query: 79  GFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
           GF +   I  TQPRRIA  S++ R+A E   +   +VGY++RF     ++T+I  +T+G+
Sbjct: 122 GFGQKGVIGHTQPRRIAARSVAARIAEELNMELGGVVGYKVRFSDQISDETQIKLMTDGI 181

Query: 136 LL 137
           LL
Sbjct: 182 LL 183



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ ++    ++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 403 RVSEGICIRLYSEDDFNNRPAFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRH 462

Query: 869 IESSVRSLTQHGAID-------SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L +  A +        K ++T +G+ L+ LPVD  L KML+    F  +  ++
Sbjct: 463 IQDGMKLLEELQAFEWKKNKQGEKRQLTAIGKQLAQLPVDPRLAKMLLSAVQFSCLHELM 522

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 523 IIVAALSIQ--DPRER 536



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 50/74 (67%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++ +D FL+ YD+L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 184  AEIQSDRFLNQYDMLIIDEAHERSLNNDFILGYLKQLLPQRPDLKVIITSATIDVERFSQ 243

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 244  HFNHAPIIEVSGRT 257



 Score = 44.7 bits (104), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 25/34 (73%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++ +D FL+ YD+LI+DE HER L  DF+LG +
Sbjct: 184 AEIQSDRFLNQYDMLIIDEAHERSLNNDFILGYL 217


>gi|254514706|ref|ZP_05126767.1| ATP-dependent helicase HrpA [gamma proteobacterium NOR5-3]
 gi|219676949|gb|EED33314.1| ATP-dependent helicase HrpA [gamma proteobacterium NOR5-3]
          Length = 1254

 Score =  256 bits (654), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 159/461 (34%), Positives = 255/461 (55%), Gaps = 21/461 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E+  D  L  YD L++DE HER L+ DF+LG +K LL    ++K+++ SATI++  F  +
Sbjct: 128 EMQRDRDLRQYDTLIIDEAHERSLNIDFILGYLKRLLPRRPDLKVLVTSATIDVGRFSEH 187

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP---RTERG 426
           FN  A +I+V GR YP+   Y P    D + SE L     +R ++ + K+         G
Sbjct: 188 FNG-APVIEVSGRSYPVTTHYLP---RDSSNSEDL-----LRQVASVVKEVQAGIHGTPG 238

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF-HYAPEGLRKCIV 485
           D+L+F+SG  +I  + R  +     + G  VLPL++ LS  EQ RVF   +  GLR  ++
Sbjct: 239 DMLVFLSGERDIRDVARQLR----GAAGLDVLPLYARLSQGEQARVFGRGSARGLR-VVL 293

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           STN+AETS+T+ GIRFV+D G+ +   Y    ++  L    +S+ASA+QR+GR GR GPG
Sbjct: 294 STNVAETSVTVPGIRFVIDPGEARISRYSYRTRVQRLPIEPVSRASADQRRGRCGRVGPG 353

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLY+EE Y    +++ PEI+R ++ +++L ++ +GLGD+ KFPFLE P +  I    
Sbjct: 354 ICLRLYTEEDYLNRPQFTDPEIKRSNLAAVVLQMLQLGLGDITKFPFLEPPDSRLIRDGY 413

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
           R L + GA++ +E++T LGR ++  P+D  L +M++    F  +  +L +A+ LS+Q P 
Sbjct: 414 RLLDELGAVNQREQLTRLGRRMAAFPIDPSLSRMVLAAQEFSVLPEMLVIASALSIQDPR 473

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIEEQRF 723
              A R    + +         D +++LN ++ +   ++    +K  K CKR  +   R 
Sbjct: 474 ERPADRQAQADQSHARFADPRSDFMSLLNLWRYYEEQRQTLSENKLRKLCKREYLSWLRM 533

Query: 724 YEVTKLRSQFKQVLGDSGLITDIP-GPDASLSSRERALRHG 763
            E   +  Q        GL   +   P+   +   RAL  G
Sbjct: 534 REWRDVHRQISIACRSQGLKPALELAPETDYAGVHRALLSG 574



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 82/130 (63%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R GPG+C RLY+EE Y    +++ PEI+R ++ +++L ++ +GLGD+ KFPFLE P + 
Sbjct: 348 GRVGPGICLRLYTEEDYLNRPQFTDPEIKRSNLAAVVLQMLQLGLGDITKFPFLEPPDSR 407

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I    R L + GA++ +E++T LGR ++  P+D  L +M++    F  +  ML++  AL
Sbjct: 408 LIRDGYRLLDELGAVNQREQLTRLGRRMAAFPIDPSLSRMVLAAQEFSVLPEMLVIASAL 467

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 468 SIQ--DPRER 475



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 74/105 (70%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           + LPVA+++QEI D + + +VVI+AG+TG GK+TQ+P+  ++ G    QRI  TQPRR+A
Sbjct: 22  SDLPVAEHRQEIADALREHQVVIVAGETGSGKTTQLPKICLELGRGRLQRIGHTQPRRLA 81

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             ++++R+A E       LVGYQ+RF++   ++T +  +T+G+LL
Sbjct: 82  ARTVAQRIAEEVGQPLGELVGYQVRFQEILGDRTAVKLMTDGILL 126



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 11/99 (11%)

Query: 1089 EEAGERLESMDANEVEFR-LKHDPKQVQVAADNFLSS----------YDVLVLDEIHERH 1137
            EE G+ L  +   +V F+ +  D   V++  D  L S          YD L++DE HER 
Sbjct: 91   EEVGQPLGELVGYQVRFQEILGDRTAVKLMTDGILLSEMQRDRDLRQYDTLIIDEAHERS 150

Query: 1138 LHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            L+ DF+LG +K LL    ++K+++ SATI++  F  +FN
Sbjct: 151  LNIDFILGYLKRLLPRRPDLKVLVTSATIDVGRFSEHFN 189


>gi|281206085|gb|EFA80274.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
          Length = 990

 Score =  256 bits (654), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 163/452 (36%), Positives = 257/452 (56%), Gaps = 26/452 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E  AD  L  Y V++LDE HER L  D L G+IK +L    ++K+++MSAT++   F  Y
Sbjct: 196 ESMADPLLKKYSVIILDEAHERTLSTDILFGLIKGVLQKRKDLKLVVMSATLDAGKFQKY 255

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR-ILSIIDKKYPRTERGDV 428
           FN  A ++KVPGRL+P+++ Y    E D      LD    +R +LSI    +   + GD+
Sbjct: 256 FND-APLMKVPGRLHPVEIYYTQEPERDY-----LDAA--VRTVLSI----HQDEDAGDI 303

Query: 429 LIFMSGISEIS-SIVRAAQEYNEKSQGWIV-LPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           L+F++G  EI  +  R A+E  +     I  LPL+STL + +Q ++F   P   RKCI S
Sbjct: 304 LVFLTGEDEIEETCTRVAREAKQMQLPPITCLPLYSTLPMSQQSKIFDNYPH--RKCIFS 361

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TNIAETS+TIDGI +VVD G  K+ +Y+  +++ +L    IS+ASA+QR GRAGRT PG 
Sbjct: 362 TNIAETSLTIDGIVYVVDPGFSKQKTYNPRSRIESLLVSPISQASAKQRAGRAGRTRPGK 421

Query: 547 CYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           C+RLY+E+ +   L   + PEI R ++ +++L L  +G+ D+  F F++ P  E +  ++
Sbjct: 422 CFRLYTEKSFKKNLPVQTYPEILRANLSTVILQLKKLGVDDLVHFDFMDPPIPETLMRAL 481

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
             L   GA+D +  +T  G  +++ P+D  L K+LV  + ++  + VL++AA+LSV + F
Sbjct: 482 EVLHYLGALDDEGELTKDGEIMAEFPLDPQLSKILVSSARYNCSNEVLTIAAMLSVPNVF 541

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYE 725
                   D +  +K  +   GD LT+LN Y  +    K    +  WC    +  +   +
Sbjct: 542 HRPKDNRRDADQTKKLFDHIDGDHLTLLNVYHSF----KQSGENTTWCYDNYLNYRAIKQ 597

Query: 726 VTKLRSQFKQVLGDSGLITDIPGPDASLSSRE 757
            T +RSQ  ++L   G    +P     ++SR+
Sbjct: 598 ATNVRSQLARILSRFG----VPLVSGDINSRD 625



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 74/113 (65%), Gaps = 4/113 (3%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACT 86
           I E +  LPV + + E I+ +   +V+++ G+TG GK+TQIPQ++ +AGF      +  T
Sbjct: 84  ILEKRKLLPVWEQRSEFINKLKSSQVLVLVGETGSGKTTQIPQFVFEAGFVEKGTMVGVT 143

Query: 87  QPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           QPRR+A +S++KRV+ E        VGY IRFE+   EKT + ++T+G+LLR+
Sbjct: 144 QPRRVAALSVAKRVSEEMDVVLGEEVGYSIRFEELTSEKTFMKYMTDGMLLRE 196



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 17/211 (8%)

Query: 809  RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT PG C+RLY+E+ +   L   + PEI R ++ +++L L  +G+ D+  F F++ P  E
Sbjct: 416  RTRPGKCFRLYTEKSFKKNLPVQTYPEILRANLSTVILQLKKLGVDDLVHFDFMDPPIPE 475

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
             +  ++  L   GA+D +  +T  G  +++ P+D  L K+LV  + ++  + +L +   L
Sbjct: 476  TLMRALEVLHYLGALDDEGELTKDGEIMAEFPLDPQLSKILVSSARYNCSNEVLTIAAML 535

Query: 928  NFGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQI-----DTMLLLDLAL 977
            +   +     D++       +    +      G  L   +++H       +T    D  L
Sbjct: 536  SVPNVFHRPKDNRRDADQTKKLFDHID-----GDHLTLLNVYHSFKQSGENTTWCYDNYL 590

Query: 978  NFGAIDSKERVTS-LGRFLSDLPVDIPLGKM 1007
            N+ AI     V S L R LS   V +  G +
Sbjct: 591  NYRAIKQATNVRSQLARILSRFGVPLVSGDI 621



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            AD  L  Y V++LDE HER L  D L G+IK +L    ++K+++MSAT++   F  YFN
Sbjct: 199  ADPLLKKYSVIILDEAHERTLSTDILFGLIKGVLQKRKDLKLVVMSATLDAGKFQKYFN 257


>gi|427783801|gb|JAA57352.1| Putative mrna splicing factor atp-dependent rna helicase
           [Rhipicephalus pulchellus]
          Length = 802

 Score =  256 bits (654), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 160/455 (35%), Positives = 253/455 (55%), Gaps = 28/455 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH-----STAEVKIILMSATINIE 364
           E   D  L  Y V+VLDE HER ++ D L GV+K         +   +KI++MSAT++++
Sbjct: 273 EALLDPLLRRYAVVVLDEAHERTVNTDILFGVVKSAQKERQRLNMTPLKIVVMSATMDVD 332

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424
            F  YFN  A +  + GR + I++ Y    + D   S        + +  I   + P   
Sbjct: 333 HFSHYFNN-APVYTLEGRQHHIEMMYAVKPQEDYVFS------ALVTVFQIHRNQGP--- 382

Query: 425 RGDVLIFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL 480
            GD+L+F +G  EI S+V+AA+E     +   Q  +VLPL++ L    Q RVF  A +  
Sbjct: 383 -GDILVFCTGQEEIESVVQAAKETVLQLDTAEQNLLVLPLYAALPSSMQLRVFEPAKKNW 441

Query: 481 RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540
           RK I STNIAETSITI GI++VVD+G VK+ +Y     +  L+   ISKA A QR GRAG
Sbjct: 442 RKVIFSTNIAETSITIPGIKYVVDTGVVKQRTYQPGTGLEVLKVRKISKAQAWQRAGRAG 501

Query: 541 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 600
           R   G+CYRLY++ QY  + E+S PEI+R S+  ++L ++ +G+ DV  F F++ P  ++
Sbjct: 502 RECSGICYRLYTKVQYEAMREHSIPEIQRCSLSGVVLQMLALGIEDVFAFDFMDKPSEKH 561

Query: 601 IESSVRSLTQHGAIDSKERV--TSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
           +  ++  L Q GA++ KE V  T+LG+ ++  P++    K+++        D +L++ ++
Sbjct: 562 LTEALDKLHQLGAVEKKEEVKLTALGQKMAAFPLEPRFAKIILCSKELGCTDEILTIISI 621

Query: 659 LSVQSP-FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRG 717
           LS  S  + N   R+   E  RK  +SN GD + +LN YK +  VK +    K WCK   
Sbjct: 622 LSGDSVLYFNEKHRERAAEVWRK-FQSNEGDHVMLLNVYKAYKSVKGN----KAWCKENF 676

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDAS 752
           + ++   +V ++RSQ   +   +G+     G D++
Sbjct: 677 VSKKNMMKVIEIRSQLADLCVKAGVPLRSCGQDSA 711



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 80/128 (62%), Gaps = 3/128 (2%)

Query: 15  TYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQY 74
           T  D ++ E+    M++ + + +LP+   ++E++  V +   VI+ G+T CGK+TQ+PQY
Sbjct: 146 TVEDGEEVERRRIKMQLLKQRRALPIYPVRRELVRVVRQRDCVILIGETACGKTTQLPQY 205

Query: 75  LVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFI 131
           L  AG  +   I  TQPRR+A I+++ RVA E   +   LVGY +RF+      T+I ++
Sbjct: 206 LHAAGLTKQGIIGITQPRRMAAITVADRVALEMGVEIGGLVGYSVRFDDTTSHATRIKYL 265

Query: 132 TEGLLLRQ 139
           T+G+LLR+
Sbjct: 266 TDGMLLRE 273



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY++ QY  + E+S PEI+R S+  ++L ++ +G+ DV  F F++ P  ++
Sbjct: 502 RECSGICYRLYTKVQYEAMREHSIPEIQRCSLSGVVLQMLALGIEDVFAFDFMDKPSEKH 561

Query: 869 IESSVRSLTQHGAIDSKERV--TTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           +  ++  L Q GA++ KE V  T LG+ ++  P++    K+++        D +L +
Sbjct: 562 LTEALDKLHQLGAVEKKEEVKLTALGQKMAAFPLEPRFAKIILCSKELGCTDEILTI 618



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH-----STAEVKIILMSATINIELFHT 1173
            D  L  Y V+VLDE HER ++ D L GV+K         +   +KI++MSAT++++ F  
Sbjct: 277  DPLLRRYAVVVLDEAHERTVNTDILFGVVKSAQKERQRLNMTPLKIVVMSATMDVDHFSH 336

Query: 1174 YFNRIAKDLLSG 1185
            YFN      L G
Sbjct: 337  YFNNAPVYTLEG 348


>gi|398793793|ref|ZP_10554037.1| ATP-dependent helicase HrpA [Pantoea sp. YR343]
 gi|398209864|gb|EJM96526.1| ATP-dependent helicase HrpA [Pantoea sp. YR343]
          Length = 1298

 Score =  256 bits (654), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 248/450 (55%), Gaps = 21/450 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 180 AEIQQDRLLLQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIDPQRFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +F+  A +I+V GR YP+++ Y P+VE  D T  ++L       I   +D+   +  RGD
Sbjct: 240 HFHN-APVIEVSGRTYPVEVRYRPMVEDADDTDRDQLQA-----IFDAVDE-LGQESRGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + +       +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALMKRDIAHTE--ILPLYARLSNAEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
           L + GAI    D   ++T  GR L+ LPVD  + +M++    F  +   + + A LS+Q 
Sbjct: 469 LEELGAITLSEDETYKLTPSGRQLAQLPVDPRMARMVLEAQKFGCVREAMIITAALSIQD 528

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIEE 720
           P    A +    +   +  E    D L  +N +  +L  ++  + S   ++ CK   +  
Sbjct: 529 PRERPADKKQASDEKHRRFEDKESDFLAFVNLWN-YLQEQQKALSSNHFRRLCKTEFLNY 587

Query: 721 QRFYEVTKLRSQFKQVLGDSGL-ITDIPGP 749
            R  E   + +Q +QV+ + G+ +   P P
Sbjct: 588 LRVREWQDIYTQLRQVVREQGMPVNSEPAP 617



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI+  VR L + GAI    D   ++T  GR L+ LPVD  + +M++    F  +   +++
Sbjct: 461 NIQDGVRLLEELGAITLSEDETYKLTPSGRQLAQLPVDPRMARMVLEAQKFGCVREAMII 520

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 521 TAALSIQ--DPRER 532



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q +Q+I D + + +VVI+AG+TG GK+TQ+P+  +  G      I  TQPRR+A
Sbjct: 75  DNLPVSQKQQDIADAISQHQVVIVAGETGSGKTTQLPKICLALGRGVKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  +     +GY++RF     E T++  +T+G+LL
Sbjct: 135 ARTVANRIADELETSLGGTIGYKVRFNDQVSETTQVKLMTDGILL 179



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 180  AEIQQDRLLLQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIDPQRFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 240  HFHNAPVIEVSGRT 253


>gi|307211051|gb|EFN87303.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
           [Harpegnathos saltator]
          Length = 1130

 Score =  256 bits (654), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 153/425 (36%), Positives = 243/425 (57%), Gaps = 19/425 (4%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F  +F   A  
Sbjct: 547 LDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDCSKFSAFFGNAA-T 605

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
            ++PGR +P+++  H    +D    + +D     ++L I    + + + GDVL+FM G  
Sbjct: 606 FQIPGRTFPVEV-LHAKNPVD----DYVDAA-VKQVLQI----HLQPKSGDVLVFMPGQE 655

Query: 437 EISSIVRAAQEY---NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETS 493
           +I     A +E     E +    +LP++S L  + Q ++F  +  GLRKC+V+TNIAETS
Sbjct: 656 DIEVTCEALKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRSEGGLRKCVVATNIAETS 715

Query: 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553
           +T+DGI FVVDSG  K   Y+    M  LQ + +S+A+A+QR GRAGRTGPG CYRLY+ 
Sbjct: 716 LTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRSGRAGRTGPGQCYRLYTR 775

Query: 554 EQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHG 612
            QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +NI +S+  L   G
Sbjct: 776 RQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQLWILG 835

Query: 613 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRD 672
           A+D   R+T LGR +++ P+D P  +ML+  S       +L + ++LSV S F     R+
Sbjct: 836 ALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSIFYRPKGRE 895

Query: 673 PDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQ 732
            D ++AR++ +    D LT LN Y +W    K    S  WC    I  +   +V ++RSQ
Sbjct: 896 EDSDSAREKFQVPESDHLTYLNVYNQW----KANGYSSSWCNDHFIHAKAMRKVREVRSQ 951

Query: 733 FKQVL 737
            +++L
Sbjct: 952 LEEIL 956



 Score =  100 bits (249), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 15/137 (10%)

Query: 18  DFKQKEKFSTLM------------KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGC 65
           DFK  +K++  +             I+  + SLPV   +QE+++ + +  VV+I G+TG 
Sbjct: 404 DFKAGQKYARHIGAGEVTGEAKHRSIQHQRRSLPVFAVRQELLNVIRENSVVVIVGETGS 463

Query: 66  GKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR 122
           GK+TQ+ QYL + G+ R   I CTQPRR+A +S++KRV+ E  +   + VGY IRFE   
Sbjct: 464 GKTTQLTQYLHEDGYSRNGIIGCTQPRRVAAMSVAKRVSDEMATALGDKVGYAIRFEDCT 523

Query: 123 REKTKIVFITEGLLLRQ 139
            + T I ++T+G+LLR+
Sbjct: 524 SKDTVIKYMTDGILLRE 540



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 73/126 (57%), Gaps = 1/126 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG CYRLY+  QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP 
Sbjct: 762 GRTGPGQCYRLYTRRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQ 821

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
           +NI +S+  L   GA+D   R+T LGR +++ P+D P  +ML+  S       +L++   
Sbjct: 822 DNILNSLYQLWILGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSM 881

Query: 927 LNFGAI 932
           L+  +I
Sbjct: 882 LSVPSI 887



 Score = 48.1 bits (113), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F  +F   A  
Sbjct: 547  LDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDCSKFSAFFGNAATF 606

Query: 1182 LLSGST 1187
             + G T
Sbjct: 607  QIPGRT 612


>gi|403362621|gb|EJY81039.1| ATP-dependent helicase DHX8, RNA helicase HRH1 [Oxytricha trifallax]
          Length = 1352

 Score =  256 bits (654), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 147/433 (33%), Positives = 242/433 (55%), Gaps = 20/433 (4%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L SY V++LDE HER +H D L G++K  +    ++K+I+ SAT++ E F  Y
Sbjct: 799  ECLIDPKLRSYSVIMLDEAHERTIHTDVLFGLLKQAMDQRDDLKLIVTSATLDAEKFSAY 858

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            FN    I ++PGR++P+++ +    E D  ++           L  + + + +  RGD+L
Sbjct: 859  FNDCP-IFRIPGRIFPVEILFSKDPEADYLEA----------ALITVQQIHLQEPRGDIL 907

Query: 430  IFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
            +F++G  EI +  +   E      + +   I+LP++S L  + Q ++F  AP+G RKC++
Sbjct: 908  MFLTGQEEIDTSCQILHERMKALGDDAPELIILPVYSALPSDMQSKIFDPAPQGSRKCVI 967

Query: 486  STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
            +TNIAE S+TIDGI +VVD G  K   Y+    M TL    IS+ASA QR GRAGRTGPG
Sbjct: 968  ATNIAEASLTIDGIFYVVDPGFAKLKVYNPKLGMDTLIVSPISQASARQRAGRAGRTGPG 1027

Query: 546  VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
             C+RLY+EE Y + +   S PEI+R ++ + +L L  MG+ D+  F F++ PP +++ ++
Sbjct: 1028 KCFRLYTEEAYKNEMLPTSIPEIQRTNLANTVLLLKAMGINDLINFDFMDPPPIQSLIAA 1087

Query: 605  VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            + SL   GA+D +  +T +GR +++ P++  L KM +        D ++++ A+LSVQ+ 
Sbjct: 1088 MESLYTLGALDDEGLLTKIGRLMAEFPLEPQLSKMTLTSVDLGCSDEIITIVAMLSVQNV 1147

Query: 665  FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
            F     +    +  R +     GD LT+L  Y+ W    K +     WC    I+ +   
Sbjct: 1148 FYRPREKQTVADQKRAKFYHPDGDHLTLLTVYEAW----KAQGMQNAWCFENFIQARALK 1203

Query: 725  EVTKLRSQFKQVL 737
              + +R Q   ++
Sbjct: 1204 RASDVRKQLITIM 1216



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 78/115 (67%), Gaps = 4/115 (3%)

Query: 29  MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIA 84
           + IRE + SLP+   + E+I  +   R++++ G+TG GK+TQ+PQYLV+ G     +++ 
Sbjct: 685 LTIREQRESLPIFTLRTELIKAIFDNRILVVIGETGSGKTTQMPQYLVEMGLCTKGKKVG 744

Query: 85  CTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           CTQPRR+A +S++KRVA E   +    VGY IRFE +   KT + ++T+G+LLR+
Sbjct: 745 CTQPRRVAAMSVAKRVAEEMNVRLGQEVGYSIRFEDYTSPKTVVKYMTDGMLLRE 799



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG C+RLY+EE Y + +   S PEI+R ++ + +L L  MG+ D+  F F++ PP +
Sbjct: 1023 RTGPGKCFRLYTEEAYKNEMLPTSIPEIQRTNLANTVLLLKAMGINDLINFDFMDPPPIQ 1082

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKM 907
            ++ +++ SL   GA+D +  +T +GR +++ P++  L KM
Sbjct: 1083 SLIAAMESLYTLGALDDEGLLTKIGRLMAEFPLEPQLSKM 1122



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            D  L SY V++LDE HER +H D L G++K  +    ++K+I+ SAT++ E F  YFN
Sbjct: 803  DPKLRSYSVIMLDEAHERTIHTDVLFGLLKQAMDQRDDLKLIVTSATLDAEKFSAYFN 860


>gi|354544825|emb|CCE41550.1| hypothetical protein CPAR2_801020 [Candida parapsilosis]
          Length = 1047

 Score =  256 bits (654), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 154/446 (34%), Positives = 244/446 (54%), Gaps = 27/446 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E+ ADN LS Y  +++DE HER L+ D LLG+ K LL    ++K+I+ SAT+N + F  +
Sbjct: 445 EILADNTLSEYSCIIIDEAHERSLNTDILLGLFKGLLAKRRDLKLIVTSATMNADRFTRF 504

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI-----IDKKYPRTE 424
           F   A    +PGR +P+ + ++  V +D  ++         +ILSI      D K     
Sbjct: 505 FG-AAPQFTIPGRTFPVDIYFNKNVTMDYVET------AVKQILSIHLSKGSDTKGEFVN 557

Query: 425 RGDVLIFMSGISEI---SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR 481
            GD+L+FM+G  +I     ++R      E      +LP++S++  E Q R+F+ +    R
Sbjct: 558 DGDILVFMTGQEDIEITCDLLREKLNMLENPPPLEILPIYSSMPQELQKRIFNKSSTTKR 617

Query: 482 KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
           K +V+TNIAETS+T+DGI++V+D G VK   Y+    M TLQ   IS A+AEQR GRAGR
Sbjct: 618 KVVVATNIAETSLTVDGIKYVIDCGLVKVKVYNPKLGMDTLQVVPISFANAEQRSGRAGR 677

Query: 542 TGPGVCYRLYSEEQYSLLAEYST--PEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 599
           TG GV YRLY+E        Y    PEI+R ++ + +L L  + + D+  FPFL++PP +
Sbjct: 678 TGAGVAYRLYTEHATDPQNMYQQPIPEIQRTNLSNTMLLLKSLNVRDINNFPFLDSPPKD 737

Query: 600 NIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGS--MFHQIDTVLSLAA 657
            +  S+  L   GA+D+   +T LGR +   P++  L K+++  +   F   + +L++ A
Sbjct: 738 LLNCSLYDLWAMGALDNIGELTKLGRDMIQFPIEPTLSKLILLSTEQYFRCSEDILTIVA 797

Query: 658 VLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW------LGVKKDRVRSKK 711
           +LSV S F     R  + ++AR+       D LT+LN Y +W       G   +R+   +
Sbjct: 798 MLSVSSIFQRSKERAKEADSARERFVVAESDHLTLLNVYTQWETNMNKFGSNWNRI--NE 855

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQVL 737
           WC R  I+ +      ++R Q   ++
Sbjct: 856 WCDRNFIQHKSLLRAKEIRKQLALIM 881



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 78/130 (60%), Gaps = 11/130 (8%)

Query: 18  DFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77
           D +Q   + T+ K R+   SLP    + +++ T+   +V II G+TG GK+TQ+ Q+L +
Sbjct: 319 DTEQNIDYDTIQKQRK---SLPAYAVRDDVVSTIRDNQVTIIIGETGSGKTTQLAQFLYE 375

Query: 78  AGFQR-------IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIV 129
            G          I CTQPRR+A +S++KRV+ E   +    VGY +RF +K   EKT I 
Sbjct: 376 QGLATTTDERRIIGCTQPRRVAAMSVAKRVSEEMHVKLGEEVGYSVRFDDKTNPEKTVIK 435

Query: 130 FITEGLLLRQ 139
           ++TEG+LLR+
Sbjct: 436 YMTEGILLRE 445



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 6/136 (4%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTP--EIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
           RTG GV YRLY+E        Y  P  EI+R ++ + +L L  + + D+  FPFL++PP 
Sbjct: 677 RTGAGVAYRLYTEHATDPQNMYQQPIPEIQRTNLSNTMLLLKSLNVRDINNFPFLDSPPK 736

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGS--MFHQIDTMLLLD 924
           + +  S+  L   GA+D+   +T LGR +   P++  L K+++  +   F   + +L + 
Sbjct: 737 DLLNCSLYDLWAMGALDNIGELTKLGRDMIQFPIEPTLSKLILLSTEQYFRCSEDILTIV 796

Query: 925 LALNFGAI--DSKERV 938
             L+  +I   SKER 
Sbjct: 797 AMLSVSSIFQRSKERA 812



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            ++ ADN LS Y  +++DE HER L+ D LLG+ K LL    ++K+I+ SAT+N + F  +
Sbjct: 445  EILADNTLSEYSCIIIDEAHERSLNTDILLGLFKGLLAKRRDLKLIVTSATMNADRFTRF 504

Query: 1175 FNRIAKDLLSGST 1187
            F    +  + G T
Sbjct: 505  FGAAPQFTIPGRT 517


>gi|238753569|ref|ZP_04614931.1| ATP-dependent helicase HrpA [Yersinia ruckeri ATCC 29473]
 gi|238708121|gb|EEQ00477.1| ATP-dependent helicase HrpA [Yersinia ruckeri ATCC 29473]
          Length = 1295

 Score =  256 bits (654), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 159/444 (35%), Positives = 248/444 (55%), Gaps = 24/444 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 176 AEIQQDRLLLQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSH 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIV+  D  + ++L       I   +D+   R   GD
Sbjct: 236 HFNH-APIIEVSGRTYPVEVRYRPIVDDADDVERDQLQA-----IFDAVDE-LGRESPGD 288

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF--HYAPEGLRKCIV 485
           +LIFMSG  EI     A  + N       VLPL++ LS  EQ+RVF  H+     R+ ++
Sbjct: 289 ILIFMSGEREIRDTADALNKLNLPHTE--VLPLYARLSNSEQNRVFQSHHG----RRIVL 342

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G
Sbjct: 343 ATNVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVSDG 402

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 403 ICIRLYSEQDFLSRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGV 462

Query: 606 RSLTQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
           R L + GAI    +  +++T+LGR L+ LPVD  L +M++       +  V+ + A LS+
Sbjct: 463 RLLEELGAIQTAPNGHQQLTALGRQLAQLPVDPRLARMVLQAQKHGCVREVMVITAALSI 522

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGI 718
           Q P      +    +   +       D L  +N + ++L  ++  + S   +K C+   +
Sbjct: 523 QDPRERPMDKQQASDEKHRRFADKESDFLAFVNLW-DYLKEQQKELSSAQFRKLCRSDYL 581

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL 742
              R  E   + +Q +QV+ + GL
Sbjct: 582 NYLRVREWQDIYTQLRQVVRELGL 605



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 79/134 (58%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 397 GRVSDGICIRLYSEQDFLSRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKR 456

Query: 868 NIESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI+  VR L + GAI    +  +++T LGR L+ LPVD  L +M++       +  ++++
Sbjct: 457 NIQDGVRLLEELGAIQTAPNGHQQLTALGRQLAQLPVDPRLARMVLQAQKHGCVREVMVI 516

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 517 TAALSIQ--DPRER 528



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 64/104 (61%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q K +I   +   +VVI+AG+TG GK+TQIP+  ++ G      I  TQPRR+A 
Sbjct: 72  NLPVSQKKADIYQAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVKGVIGHTQPRRLAA 131

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  +     VGY++RF     E + +  +T+G+LL
Sbjct: 132 RTVANRIADELDTTLGGCVGYKVRFNDQVGENSLVKLMTDGILL 175



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 176  AEIQQDRLLLQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSH 235

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 236  HFNHAPIIEVSGRT 249


>gi|71052017|gb|AAH30017.1| DHX33 protein, partial [Homo sapiens]
          Length = 616

 Score =  256 bits (654), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 87  EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 146

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 147 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 194

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 195 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 252

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 253 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKVKKYNPDSGLEVLAVQRVSKTQAWQRT 312

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 313 GRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 372

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 373 SPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 432

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 433 TIVSLLSVDSVLHNPPSRREEVQGVRKKFISSEGDHMTLLNIYRTFKNLGGNKD------ 486

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WCK   +  +    V ++R+Q + +
Sbjct: 487 WCKENFVNSKNMTLVAEVRAQLRDI 511



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+E+++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 317 REDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 376

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 377 IQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 434



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 90   SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFS 149

Query: 1173 TYFN 1176
             YFN
Sbjct: 150  QYFN 153


>gi|403279742|ref|XP_003931404.1| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase
           DHX33 [Saimiri boliviensis boliviensis]
          Length = 698

 Score =  256 bits (654), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 149/443 (33%), Positives = 254/443 (57%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 169 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 228

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 229 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 276

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 277 PFSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 334

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 335 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 394

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P
Sbjct: 395 GRAGREDSGICYRLYTEEEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 454

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K+    +T +GR ++  P++    K ++    F   + +L
Sbjct: 455 SPDHIQAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPKFAKTILMSPKFRCTEEIL 514

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + +  RK+  S+ GD +T+LN Y+ +  +  +    K WC
Sbjct: 515 TIVSLLSVDSILHNPPSRRDEVQGVRKKFTSSEGDHITLLNIYRTFKSIGGN----KDWC 570

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +    V ++R+Q + +
Sbjct: 571 KENFVNSKNMMLVAEVRAQLRDI 593



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)

Query: 35  QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
           + SLP+ Q + +++  +      ++ G+TG GK+TQIPQYL + G  R   IA TQPRR+
Sbjct: 62  RRSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 121

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           A ISL+ RV+ E  ++   LVGY +RF+    E T+I F+T+G+LLR+
Sbjct: 122 AAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLRE 169



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 72/127 (56%), Gaps = 3/127 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY+EE++    + + PEI+R ++ S++L L+ M + +V  F F+  P  ++
Sbjct: 399 REDSGICYRLYTEEEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 458

Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
           I++++  L   GA++ K+    +T +GR ++  P++    K ++    F   + +L +  
Sbjct: 459 IQAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPKFAKTILMSPKFRCTEEILTIVS 518

Query: 926 ALNFGAI 932
            L+  +I
Sbjct: 519 LLSVDSI 525



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 172  SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFS 231

Query: 1173 TYFN 1176
             YFN
Sbjct: 232  QYFN 235


>gi|311279712|ref|YP_003941943.1| ATP-dependent helicase HrpA [Enterobacter cloacae SCF1]
 gi|308748907|gb|ADO48659.1| ATP-dependent helicase HrpA [Enterobacter cloacae SCF1]
          Length = 1300

 Score =  256 bits (654), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 156/438 (35%), Positives = 243/438 (55%), Gaps = 21/438 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ + F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPQRFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A +I+V GR YP+++ Y PIVE  D T+ ++L       I   +D+       GD
Sbjct: 240 HFNN-APVIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LNHEGPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     +LPL++ LS  EQ+RVF   P   R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKRDMRHTE--ILPLYARLSNSEQNRVFQ--PHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GIR+V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIRYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T+ GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQATAYKLTAQGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPLDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDYLN 587

Query: 720 EQRFYEVTKLRSQFKQVL 737
             R  E   + +Q +QV+
Sbjct: 588 YLRVREWQDIYTQLRQVV 605



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T  GR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQATAYKLTAQGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQAILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDSTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ + F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPQRFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPVIEVSGRT 253


>gi|443920379|gb|ELU40311.1| ATP-dependent RNA helicase DHX8 [Rhizoctonia solani AG-1 IA]
          Length = 1185

 Score =  256 bits (653), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 158/442 (35%), Positives = 244/442 (55%), Gaps = 26/442 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA----EVKIILMSATINIEL 365
            E   D  +++Y VL+LDE HER +  D L G++K     +A    ++KII+ SAT+N E 
Sbjct: 630  ECLIDPDMTAYSVLILDEAHERTIATDVLFGLLKSEFLESAKRRPDLKIIVTSATLNAEK 689

Query: 366  FHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTER 425
            F  YF +   I  +PGR YP+++ Y         +S+ LD    I I+ I   + P    
Sbjct: 690  FSEYFFKCP-IFTIPGRTYPVEILY-----TKEPESDYLD-ASLITIMQIHLSEPP---- 738

Query: 426  GDVLIFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGL 480
            GD+L+F++G  EI +  +   E   K+ G      I+LP++S L  E Q ++F  AP G 
Sbjct: 739  GDILLFLTGQEEIDTACQILYE-RMKALGPQVPELIILPVYSALPSEMQSKIFEPAPPGA 797

Query: 481  RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540
            RK +++TNIAETSITIDGI +V+D G VK+ +YD    M +L    IS+A A QR GRAG
Sbjct: 798  RKVVIATNIAETSITIDGIYYVIDPGFVKQNAYDPRLGMDSLVVTPISQAQANQRAGRAG 857

Query: 541  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 599
            RTGPG CYRLY+E  + + +     P+I+R ++   +L L  MG+ D+  F F++ PPA+
Sbjct: 858  RTGPGKCYRLYTEVAFRNEMLPSPIPDIQRQNLSHTILMLKAMGINDLINFGFMDPPPAQ 917

Query: 600  NIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVL 659
             + +++  L    A+D +  +T LGR ++D P++ PL KML+        + +LS+ A+L
Sbjct: 918  TLLTALEQLYALSALDDEGLLTRLGRKMADFPMEPPLAKMLITSVDLGCSEEILSIVAML 977

Query: 660  SVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIE 719
            SVQ+ F     +    ++ + +     GD LT+L  Y  W   K     S  WC    I+
Sbjct: 978  SVQNVFYRPKEKQAQADSKKAKFHQPEGDHLTLLTVYNGWKASK----FSNPWCYENFIQ 1033

Query: 720  EQRFYEVTKLRSQFKQVLGDSG 741
             +       +R+++K  +  SG
Sbjct: 1034 ARSMRRAQDVRNRYKHDIISSG 1055



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 77/116 (66%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RI 83
           T + I E + SLP+ + +++++  V   +++I+ GDTG GK+TQ+ QYL + GF    +I
Sbjct: 515 TSLSIAEQRQSLPIYKLREKLVQAVRDHQILIVVGDTGSGKTTQMTQYLAEEGFAEHGKI 574

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A +S++KRVA E   +    VGY IRFE     +T+I ++T+G+L R+
Sbjct: 575 GCTQPRRVAAMSVAKRVAEEVGCRLGQEVGYTIRFEDCTSPETRIKYMTDGMLQRE 630



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 64/102 (62%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  + + +     P+I+R ++   +L L  MG+ D+  F F++ PPA+
Sbjct: 858 RTGPGKCYRLYTEVAFRNEMLPSPIPDIQRQNLSHTILMLKAMGINDLINFGFMDPPPAQ 917

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            + +++  L    A+D +  +T LGR ++D P++ PL KML+
Sbjct: 918 TLLTALEQLYALSALDDEGLLTRLGRKMADFPMEPPLAKMLI 959



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPK---QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            +E G  +   D    E R+K+      Q +   D  +++Y VL+LDE HER +  D L G
Sbjct: 601  QEVGYTIRFEDCTSPETRIKYMTDGMLQRECLIDPDMTAYSVLILDEAHERTIATDVLFG 660

Query: 1146 VIKCLLHSTA----EVKIILMSATINIELFHTYFNRIAKDLLSGST 1187
            ++K     +A    ++KII+ SAT+N E F  YF +     + G T
Sbjct: 661  LLKSEFLESAKRRPDLKIIVTSATLNAEKFSEYFFKCPIFTIPGRT 706


>gi|156548001|ref|XP_001605450.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16-like [Nasonia vitripennis]
          Length = 1145

 Score =  256 bits (653), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 148/425 (34%), Positives = 242/425 (56%), Gaps = 19/425 (4%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F ++F   A  
Sbjct: 563 LDRYSVVIMDEAHERSLSTDVLFGLLRDVVARRHDLKLIVTSATMDSSKFASFFGNAA-T 621

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
            ++PGR +P+++ +       +   E        ++++I    + +   GD+L+FM G  
Sbjct: 622 FQIPGRTFPVEIIF------SKNHVEDYVEAAVKQVMNI----HLQHRHGDILVFMPGQE 671

Query: 437 EISSIVRAAQEYNEKSQGWI---VLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETS 493
           +I       +E   + +G     +LP++S L  + Q ++F  A EGLRKC+V+TNIAETS
Sbjct: 672 DIEVTCEVLKERLGEIEGAAPLSILPIYSQLPSDLQAKIFQQAKEGLRKCVVATNIAETS 731

Query: 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553
           +T+DGI FVVDSG  K   Y+    M  LQ + +S+A++ QR GRAGRTGPG C+RLY+E
Sbjct: 732 LTVDGIVFVVDSGFCKLKVYNPRIGMDALQIYPVSQANSNQRSGRAGRTGPGQCFRLYTE 791

Query: 554 EQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHG 612
            QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +NI +S+  L   G
Sbjct: 792 RQYLDELLITGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQLWILG 851

Query: 613 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRD 672
           A+D+  R+T LGR +++ P+D P  +ML+  S       +L + ++LSV S F     R+
Sbjct: 852 ALDNTGRLTGLGRQMAEFPLDPPQCQMLIIASKLGCTAEILIIVSMLSVPSIFYRPKGRE 911

Query: 673 PDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQ 732
            D ++AR++ +    D LT LN Y +W    K    S  WC    I  +   +V ++R Q
Sbjct: 912 EDSDSAREKFQVPESDHLTFLNVYNQW----KTNGYSSSWCNDHFIHAKAMRKVREVRQQ 967

Query: 733 FKQVL 737
            +++L
Sbjct: 968 LEEIL 972



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 86/136 (63%), Gaps = 14/136 (10%)

Query: 18  DFKQKEKFSTLM-----------KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCG 66
           D+K  +K+++ +           KI+E +  LPV   +QE+++ + +  VVII G+TG G
Sbjct: 421 DYKAGQKYASHINDEVVVEGKHKKIQEQRRRLPVFAVRQELLNVIRENSVVIIVGETGSG 480

Query: 67  KSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRR 123
           K+TQ+ QYL + G+     I CTQPRR+A +S++KRV+ E  S   + VGY IRFE    
Sbjct: 481 KTTQLTQYLHEDGYSTNGMIGCTQPRRVAAMSVAKRVSDEMDSNLGDKVGYAIRFEDCTS 540

Query: 124 EKTKIVFITEGLLLRQ 139
           ++T I ++T+G+LLR+
Sbjct: 541 KETIIKYMTDGILLRE 556



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 88/162 (54%), Gaps = 1/162 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG C+RLY+E QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +
Sbjct: 779 RTGPGQCFRLYTERQYLDELLITGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQD 838

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           NI +S+  L   GA+D+  R+T LGR +++ P+D P  +ML+  S       +L++   L
Sbjct: 839 NILNSLYQLWILGALDNTGRLTGLGRQMAEFPLDPPQCQMLIIASKLGCTAEILIIVSML 898

Query: 928 NFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDT 969
           +  +I  + +        +     +P    L F ++++Q  T
Sbjct: 899 SVPSIFYRPKGREEDSDSAREKFQVPESDHLTFLNVYNQWKT 940



 Score = 47.8 bits (112), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F ++F   A  
Sbjct: 563  LDRYSVVIMDEAHERSLSTDVLFGLLRDVVARRHDLKLIVTSATMDSSKFASFFGNAATF 622

Query: 1182 LLSGST 1187
             + G T
Sbjct: 623  QIPGRT 628


>gi|358401307|gb|EHK50613.1| hypothetical protein TRIATDRAFT_53057 [Trichoderma atroviride IMI
            206040]
          Length = 1350

 Score =  256 bits (653), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 250/456 (54%), Gaps = 43/456 (9%)

Query: 323  LVLDEIHERHLHGDFLLGVIK-CLLHSTAEVKIILMSATINIELFHTYFNR---IAKIIK 378
            +++DE+HER L  DFLL +++  ++     +K+ILMSAT++   F TYF         ++
Sbjct: 714  IIIDEVHERSLDTDFLLNLLREVMIKKKDMLKLILMSATLDAATFKTYFETEGLSVGSVE 773

Query: 379  VPGRLYPIQLEYH--PIVELDRTKSEKLDPGPYI------RILSIIDKK----------- 419
            + GR +P++ EYH   +V +     +  D G +I      R++  +  +           
Sbjct: 774  ISGRTFPVE-EYHLDDVVRMTGFGVDGPDDGSFIGDETMGRVIQKLGHRINYNLIAEAVK 832

Query: 420  -------YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRV 472
                   Y +   G +LIF+ G+ EI+    + +  N       VLPLH++L   EQ RV
Sbjct: 833  AIDYELSYDKNS-GGILIFLPGVGEINQACNSLRAINSLH----VLPLHASLETREQKRV 887

Query: 473  FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASA 532
            F  AP G RK +V+TN+AETSITID I  V+DSGKVKE S+D    M  L+E W S+A+ 
Sbjct: 888  FSSAPPGKRKVVVATNVAETSITIDDIVAVIDSGKVKETSFDPQNNMRKLEETWASRAAC 947

Query: 533  EQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPF 592
            +QR+GRAGR   G CY+LY++     +A    PEIRRV ++ L LS+  MG+ DV +F  
Sbjct: 948  KQRQGRAGRVQAGKCYKLYTQNLEQNMAPRPEPEIRRVPLEQLCLSVRAMGMKDVVRFLG 1007

Query: 593  LEAPPAEN--IESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQID 650
                P E   IE ++  L + GA+D  E +T++G+ L+ LP D+  GK++VFG++F  +D
Sbjct: 1008 RSPTPPETPAIEGAMTLLRRMGALDGDE-LTAMGQQLAMLPADLRCGKLMVFGAIFGCLD 1066

Query: 651  TVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK 710
              +++AA+LS +SPF +   +      AR       GD LT L A+ +W  + +DR   +
Sbjct: 1067 DCVTIAAILSTRSPFISPKEKRDQAREARIRFYRGDGDLLTDLEAFNQWDEMMRDRGTPQ 1126

Query: 711  K----WCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
            +    +C+   +  Q   +++  R+Q+   L + G 
Sbjct: 1127 RQIRGFCEDNFLSFQTLSDISNTRTQYYDALREIGF 1162



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 78/145 (53%), Gaps = 19/145 (13%)

Query: 7   EEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCG 66
           EEW         F+++E  S    + + Q +LP  Q +  II TV +  V II+G+TG G
Sbjct: 564 EEW---------FRRQENPSQKKMVTKRQ-ALPAWQMQDAIIRTVNQNHVTIISGETGSG 613

Query: 67  KSTQIPQYLVQ-------AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE 119
           KSTQ  Q+L+         G   +  TQPRRI+ + L+ RVA E  S+    VGY IR E
Sbjct: 614 KSTQSVQFLLDDLYEKGLGGCANMIVTQPRRISALGLADRVAEERCSRVGGEVGYAIRGE 673

Query: 120 KHRREKTKIVFITEGLLLR--QDSG 142
             +   T+I F+T G+LLR  Q SG
Sbjct: 674 SRQSRDTRITFVTTGVLLRRLQTSG 698



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 3/113 (2%)

Query: 808  SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
             R   G CY+LY++     +A    PEIRRV ++ L LS+  MG+ DV +F      P E
Sbjct: 955  GRVQAGKCYKLYTQNLEQNMAPRPEPEIRRVPLEQLCLSVRAMGMKDVVRFLGRSPTPPE 1014

Query: 868  N--IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQID 918
               IE ++  L + GA+D  E +T +G+ L+ LP D+  GK++VFG++F  +D
Sbjct: 1015 TPAIEGAMTLLRRMGALDGDE-LTAMGQQLAMLPADLRCGKLMVFGAIFGCLD 1066



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 151/382 (39%), Gaps = 84/382 (21%)

Query: 966  QIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 1025
            +I  + L  L L+  A+  K+ V  LGR  S  P + P     + G+M           L
Sbjct: 981  EIRRVPLEQLCLSVRAMGMKDVVRFLGR--SPTPPETPA----IEGAM----------TL 1024

Query: 1026 ALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVH 1081
                GA+D  E +T++G+ L+ LP D+  GK++VFG++F  +D  + +   L+    F+ 
Sbjct: 1025 LRRMGALDGDE-LTAMGQQLAMLPADLRCGKLMVFGAIFGCLDDCVTIAAILSTRSPFIS 1083

Query: 1082 HSEEEEEEEAGERLESMDANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDE-IHERHLHG 1140
              E+ ++           A E   R       +    + F + +D ++ D    +R + G
Sbjct: 1084 PKEKRDQ-----------AREARIRFYRGDGDLLTDLEAF-NQWDEMMRDRGTPQRQIRG 1131

Query: 1141 ---DFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVTIL 1197
               D  L      L   +  +     A     L    F+  +    +G+T  S     +L
Sbjct: 1132 FCEDNFLSFQT--LSDISNTRTQYYDA-----LREIGFSPSSSSQATGNTQNS----LLL 1180

Query: 1198 KVILASGLYPQVA----IGDEFNTSET--------VKEALFHCKDKGFVSLHPFSVFTSQ 1245
            + ++AS   PQ+A       +F +S +         +   + C++ G V +HP S     
Sbjct: 1181 RALIASAFTPQIARIQYPDKKFASSMSGAVELDPEARAIKYFCQEPGRVFIHPSST---- 1236

Query: 1246 PDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLL 1305
                               L G    S     + Y S++ T+K F+ +   + A  TLLL
Sbjct: 1237 -------------------LFGSQGFSGNAAYMSYFSMISTTKIFIRDLTPLNAY-TLLL 1276

Query: 1306 FSSAIHTNSDFTRLVFDSWIEV 1327
            F   I  ++    L+ D W+ +
Sbjct: 1277 FCGPIELDTLGRGLLVDGWLRL 1298



 Score = 47.4 bits (111), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 1128 LVLDEIHERHLHGDFLLGVIK-CLLHSTAEVKIILMSATINIELFHTYF 1175
            +++DE+HER L  DFLL +++  ++     +K+ILMSAT++   F TYF
Sbjct: 714  IIIDEVHERSLDTDFLLNLLREVMIKKKDMLKLILMSATLDAATFKTYF 762


>gi|301787325|ref|XP_002929083.1| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase
           DHX33-like [Ailuropoda melanoleuca]
          Length = 761

 Score =  256 bits (653), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  +VLDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 195 EAISDSLLRKYSCVVLDEAHERTVHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 254

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ +        TK  + D   Y+   ++S+  I ++ 
Sbjct: 255 LFSRYFNG-APVLYLEGRQHPIQVFF--------TKEPQQD---YLHAALVSVFQIHQEA 302

Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI ++ +     A+   +     ++LPL+++L   +Q RVF  A
Sbjct: 303 PASQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPSMLILPLYASLPYAQQLRVFQGA 360

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SK  A QR 
Sbjct: 361 PKGCRKVIISTNIAETSITIAGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 420

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   GVCYRLY+E+++    + + PEI+R ++ S+LL L+ M + DV  F F+  P
Sbjct: 421 GRAGREDSGVCYRLYTEDEFEKFEKMTVPEIQRCNLASVLLQLLAMRVPDVLTFDFMSKP 480

Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I ++V  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L
Sbjct: 481 SPDHIRAAVAQLDLLGALEHKDDQLSLTPVGRKMAAFPLEPRFAKTILLSPKFHCTEEIL 540

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
           ++ ++LSV S   N + R  + +  RK+  S+ GD +T+LN Y+ +  LG  KD      
Sbjct: 541 TIVSLLSVDSVLYNPSSRRDEVQAVRKKFVSSEGDHITLLNIYRTFRSLGGNKD------ 594

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
           WC+   +  +    V ++R+Q + +
Sbjct: 595 WCRDNFVNSKNMTLVAEVRAQLRDI 619



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 8/129 (6%)

Query: 18  DFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77
           D  ++  F    + R     LP+   + +++  +      ++ G+TG GK+TQ+PQYL +
Sbjct: 68  DMPEEAGFPPAKRFRPG-CGLPIFPARGQLLAQLRNLDSAVLIGETGSGKTTQLPQYLYE 126

Query: 78  AGFQR-------IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVF 130
            G  R       IA TQPRR+A ISL+ RV+ E  ++   LVGY +RF+    E T+I F
Sbjct: 127 GGIGRQGVIQGVIAVTQPRRVAAISLAARVSDEKRTELGKLVGYTVRFDDVTSEDTRIKF 186

Query: 131 ITEGLLLRQ 139
           +T+G+LLR+
Sbjct: 187 LTDGMLLRE 195



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 3/119 (2%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVCYRLY+E+++    + + PEI+R ++ S+LL L+ M + DV  F F+  P  +
Sbjct: 424 GREDSGVCYRLYTEDEFEKFEKMTVPEIQRCNLASVLLQLLAMRVPDVLTFDFMSKPSPD 483

Query: 868 NIESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           +I ++V  L   GA++ K+    +T +GR ++  P++    K ++    FH  + +L +
Sbjct: 484 HIRAAVAQLDLLGALEHKDDQLSLTPVGRKMAAFPLEPRFAKTILLSPKFHCTEEILTI 542



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  +VLDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 198  SDSLLRKYSCVVLDEAHERTVHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFS 257

Query: 1173 TYFN 1176
             YFN
Sbjct: 258  RYFN 261


>gi|240851504|ref|ZP_04752255.1| ATP-dependent RNA helicase HrpA [Actinobacillus minor 202]
 gi|240310022|gb|EER48314.1| ATP-dependent RNA helicase HrpA [Actinobacillus minor 202]
          Length = 1304

 Score =  256 bits (653), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 149/443 (33%), Positives = 245/443 (55%), Gaps = 22/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K +L    ++K+I+ SATI++E F  
Sbjct: 186 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILAKRPDLKVIITSATIDVERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y PIVE +       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPIVEEE-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A Q+   +     +LPL++ LS  EQ R+F+  P  L + I++TN
Sbjct: 297 LIFMNGEREIRDTAEALQKQELRHTE--ILPLYARLSAAEQQRIFN--PSNLSRIILATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+TI  I++V+D+G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRISEGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   +++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  +R L
Sbjct: 413 RLYSEEDFNARPQFTDPEILRTNLASVILQMTALGLTDIASFPFVDAPDQRHIQDGIRLL 472

Query: 609 TQHGAIDSKE-------RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +  A + K+        +T +GR L+ LP+D  LG+M++  +    +  V+ + + LS+
Sbjct: 473 EELQAFEFKKTKNGEIRELTQIGRQLAQLPIDPRLGRMVIEAAKNGSLHEVMMIVSALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  +N +      +K+  ++  +K C++  + 
Sbjct: 533 QDPRERPQEKQQSADDKHRRFADKESDFLAFVNLWHFIQEQQKELTKNQFRKLCQKDYLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   +  Q +  + + GL
Sbjct: 593 YLRVREWQDIYHQLRLAVREMGL 615



 Score = 83.2 bits (204), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   +++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RISEGICIRLYSEEDFNARPQFTDPEILRTNLASVILQMTALGLTDIASFPFVDAPDQRH 464

Query: 869 IESSVRSLTQHGAIDSKE-------RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  +R L +  A + K+        +T +GR L+ LP+D  LG+M++  +    +  ++
Sbjct: 465 IQDGIRLLEELQAFEFKKTKNGEIRELTQIGRQLAQLPIDPRLGRMVIEAAKNGSLHEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 MIVSALSIQ--DPRER 538



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACI 94
           LPV+  + EI+  + + +VV+IAG+TG GK+TQ+P+  ++ G      I  TQPRRIA  
Sbjct: 83  LPVSARRDEILKLIAEHQVVVIAGETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRIAAR 142

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  S+  + +GY++RF     + T +  +T+G+LL
Sbjct: 143 SVATRIAEELKSELGSTIGYKVRFNDQISDNTLVKLMTDGILL 185



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K +L    ++K+I+ SATI++E F  
Sbjct: 186  AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILAKRPDLKVIITSATIDVERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D +L+ YD LI+DE HER L  DF+LG +
Sbjct: 186 AEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYL 219


>gi|294656765|ref|XP_459081.2| DEHA2D13882p [Debaryomyces hansenii CBS767]
 gi|199431726|emb|CAG87249.2| DEHA2D13882p [Debaryomyces hansenii CBS767]
          Length = 1147

 Score =  256 bits (653), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 152/429 (35%), Positives = 231/429 (53%), Gaps = 20/429 (4%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  +S Y V++LDE HER +  D L  ++K  + +   +KII+ SAT++   F  Y
Sbjct: 588  EALNDPLMSRYSVIMLDEAHERTIATDVLFTLLKKAVANNPNLKIIITSATLDANKFSNY 647

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            FN    I+++PGR YP+ + Y    E+D   S  LD        S+I       E GD+L
Sbjct: 648  FNSCP-IVRIPGRTYPVDILYTREPEMDYL-SSALD--------SVIQIHISEPE-GDIL 696

Query: 430  IFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
            +F++G  EI +   A  E      +     I+LP++S L  E Q ++F   P G RK I+
Sbjct: 697  VFLTGQEEIDTSCEALYERMKILGDTVPELIILPVYSALPSEMQSKIFEATPPGSRKVIL 756

Query: 486  STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
            +TNIAETSITIDGI +VVD G VK  +YD    M +L    IS+A A QR GRAGRTGPG
Sbjct: 757  ATNIAETSITIDGIYYVVDPGFVKINAYDSKLGMDSLTISPISQAQANQRSGRAGRTGPG 816

Query: 546  VCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
             CYRLY+E  +   +   + PEI+R ++   +L L  MG+ D+  F F++ PP   + ++
Sbjct: 817  KCYRLYTESAFKTEMLPNTVPEIQRQNLSHTILMLKAMGINDLLNFEFMDPPPTNTMMNA 876

Query: 605  VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            ++ L    A+D    +T LGR +++ P++  L K L+    F   D +L++ A+LSVQ+ 
Sbjct: 877  LQDLYTLSALDDDGYLTKLGRKMAEFPMEPALAKTLIISVDFGCSDEILTIVAMLSVQTV 936

Query: 665  FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
            F     +    +  +      +GD LT+LN Y+ W         +K+WC    I+++   
Sbjct: 937  FYRPKDKQKQADQKKYRFHHQYGDHLTLLNVYRSW----SLNGNNKQWCVENYIQDRSMK 992

Query: 725  EVTKLRSQF 733
               ++R Q 
Sbjct: 993  RAQEVRKQL 1001



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 81/139 (58%), Gaps = 10/139 (7%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EWK   ++ +D        T + I+E + SLP+   + ++I  V + + ++I G+TG GK
Sbjct: 453 EWK---KSQMDKNISYGKRTSLSIKEQRESLPIFPMRADLIKAVRENQFLVIVGETGSGK 509

Query: 68  STQIPQYLVQAGFQR-------IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           +TQI QYL +    +       I CTQPRR+A +S++KRVA E   +    VGY IRFE 
Sbjct: 510 TTQIVQYLAEESLDKVEGEQKIIGCTQPRRVAAVSVAKRVAEEYGCKVGEDVGYTIRFED 569

Query: 121 HRREKTKIVFITEGLLLRQ 139
              + T++ ++T+G+L R+
Sbjct: 570 KTSKDTRMKYMTDGMLQRE 588



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  +   +   + PEI+R ++   +L L  MG+ D+  F F++ PP  
Sbjct: 812 RTGPGKCYRLYTESAFKTEMLPNTVPEIQRQNLSHTILMLKAMGINDLLNFEFMDPPPTN 871

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + ++++ L    A+D    +T LGR +++ P++  L K L+    F   D +L +
Sbjct: 872 TMMNALQDLYTLSALDDDGYLTKLGRKMAEFPMEPALAKTLIISVDFGCSDEILTI 927



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q +   D  +S Y V++LDE HER +  D L  ++K  + +   +KII+ SAT++   F 
Sbjct: 586  QREALNDPLMSRYSVIMLDEAHERTIATDVLFTLLKKAVANNPNLKIIITSATLDANKFS 645

Query: 1173 TYFN 1176
             YFN
Sbjct: 646  NYFN 649


>gi|328771477|gb|EGF81517.1| hypothetical protein BATDEDRAFT_87465 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 671

 Score =  256 bits (653), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 163/455 (35%), Positives = 245/455 (53%), Gaps = 44/455 (9%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E+  D  LS Y  +++DE HER L+ D L+GV+K +     E++II+ SAT++ E FH +
Sbjct: 152 EILQDPLLSKYSAIMIDEAHERSLYTDILIGVLKKIFKKRPELRIIISSATLDAESFHEF 211

Query: 370 FNRIAK---------IIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKY 420
           +N  A          I+ + GR+YP       I  L  T  + L+       L I+    
Sbjct: 212 YNTNATSDKEKDTSVIMSLDGRMYP------DITSL--TTYDTLN-------LCIVVYCA 256

Query: 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQG------------WIVLPLHSTLSLEE 468
            + + GD+LIF++G  E+  +V    E  E+S G             + LPL+  L+ +E
Sbjct: 257 FQEKSGDILIFLTGRDEVEKVV---AELAEQSSGSHTVSLGSSQTPILALPLYGGLTPDE 313

Query: 469 QDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWIS 528
           Q  VF  AP G RK +VSTNIAE SITIDGI +V+D+G VK  SY+  ++  TL     S
Sbjct: 314 QRLVFSTAPTGTRKVVVSTNIAEASITIDGIVYVIDAGFVKIRSYNSVSETDTLMIVPTS 373

Query: 529 KASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVR 588
           +ASA+QR GRAGRT PG  +RLY E+ +S L   STPEI+R ++  L+L L  +G+ +V 
Sbjct: 374 QASAQQRAGRAGRTRPGKVFRLYCEDAFSTLPPTSTPEIQRSNLSPLILQLKAIGIDNVL 433

Query: 589 KFPFLEAPPAENIESSVRSLTQHGAIDSKERVT-SLGRFLSDLPVDIPLGKMLVFGSMFH 647
            F FL  PPA+ +  ++  L    A+D   R++  LG  L+++P+D  L   ++ G  F 
Sbjct: 434 NFDFLSPPPAQMLSRALELLYSLKALDDYGRLSMPLGSMLAEIPLDPMLAVTILNGHQFE 493

Query: 648 QIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRV 707
             + +L++AA+LSV+  F     R  + E AR++     GD +T +N Y+ +L  KK   
Sbjct: 494 CTEEILTVAAILSVEPIFLVPNGRFREAEDARRKFAVEEGDHITYINVYEAFLRAKK--- 550

Query: 708 RSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
            S KWC    +          +R Q +Q L   G+
Sbjct: 551 -SSKWCYSNFLNANALNRAVSVRQQLRQYLRRYGI 584



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 72/117 (61%), Gaps = 5/117 (4%)

Query: 28  LMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRI 83
           ++ + + +  LP  + + + +  V + +VVI+ G TG GK+TQ+PQYL + G+    + +
Sbjct: 36  MLSLSDQRKRLPAFKSRDQFLYCVERFQVVIVVGQTGSGKTTQLPQYLAEVGWCDGGKMV 95

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREK-TKIVFITEGLLLRQ 139
            CTQPRR+A  S++ RVA E        VGY +RF+    ++ TKI ++T+G+L R+
Sbjct: 96  GCTQPRRVAVTSIAARVAEEMGVTVGESVGYTVRFDNQSDDRLTKIKYLTDGMLFRE 152



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT PG  +RLY E+ +S L   STPEI+R ++  L+L L  +G+ +V  F FL  PPA+ 
Sbjct: 386 RTRPGKVFRLYCEDAFSTLPPTSTPEIQRSNLSPLILQLKAIGIDNVLNFDFLSPPPAQM 445

Query: 869 IESSVRSLTQHGAIDSKERVTT-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           +  ++  L    A+D   R++  LG  L+++P+D  L   ++ G  F   + +L +   L
Sbjct: 446 LSRALELLYSLKALDDYGRLSMPLGSMLAEIPLDPMLAVTILNGHQFECTEEILTVAAIL 505

Query: 928 NFGAI 932
           +   I
Sbjct: 506 SVEPI 510



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 8/103 (7%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            ++  D  LS Y  +++DE HER L+ D L+GV+K +     E++II+ SAT++ E FH +
Sbjct: 152  EILQDPLLSKYSAIMIDEAHERSLYTDILIGVLKKIFKKRPELRIIISSATLDAESFHEF 211

Query: 1175 FNRIAKDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNT 1217
            +N       + +T+   KD +++ + L   +YP +     ++T
Sbjct: 212  YN-------TNATSDKEKDTSVI-MSLDGRMYPDITSLTTYDT 246


>gi|90412955|ref|ZP_01220954.1| putative ATP-dependent helicase HrpA [Photobacterium profundum
           3TCK]
 gi|90326134|gb|EAS42568.1| putative ATP-dependent helicase HrpA [Photobacterium profundum
           3TCK]
          Length = 1304

 Score =  256 bits (653), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 159/464 (34%), Positives = 253/464 (54%), Gaps = 23/464 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FLS YD +++DE HER L+ DF++G ++ LL    ++K+++ SATI+ E F  
Sbjct: 186 AEIQNDRFLSQYDTIIIDEAHERSLNIDFIMGYLRELLPKRPDLKVVITSATIDPERFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERG-- 426
           +FN  A II+V GR YP++  Y P+       SE  D G   ++ +I D      + G  
Sbjct: 246 HFNN-APIIEVSGRTYPVETRYRPV-------SEDGDDGDRDQLQAIFDAVDELCDEGPG 297

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFM+G  EI     A ++ N ++    +LPL++ LS  EQ+RVF     G R+ ++S
Sbjct: 298 DILIFMNGEREIRDTADALEKRNLRNTE--ILPLYARLSANEQNRVFQ--SHGGRRVVLS 353

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+
Sbjct: 354 TNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEAISQASANQRKGRCGRVQEGI 413

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  +R
Sbjct: 414 CVRLYSEDDFLSRPEFTDPEILRTNLASVILQMTAIGLGDIHAFPFVEAPDNRNIQDGLR 473

Query: 607 SLTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            L + GAI     D ++R++ +GR L+ LP+D  L +M++       +  V+ +A  LS+
Sbjct: 474 LLEELGAINLKATDPRKRLSPMGRQLARLPLDPRLARMVLEAPKLGSLREVMVIACALSI 533

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P    + +    +           D +  +N +      +K+   +  +K CK+  + 
Sbjct: 534 QDPRERPSEKKQASDEKHNRFADKDSDFIAFVNLWNYVQEQQKELSGNQFRKQCKKDYLN 593

Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHG 763
             R  E   +  Q  QV+ +  L   I   +AS  S  ++L  G
Sbjct: 594 YLRIREWQDIYYQVSQVVKELDL--KINSQEASYDSIHQSLLAG 635



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 407 GRVQEGICVRLYSEDDFLSRPEFTDPEILRTNLASVILQMTAIGLGDIHAFPFVEAPDNR 466

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  +R L + GAI     D ++R++ +GR L+ LP+D  L +M++       +  +++
Sbjct: 467 NIQDGLRLLEELGAINLKATDPRKRLSPMGRQLARLPLDPRLARMVLEAPKLGSLREVMV 526

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 527 IACALSIQ--DPRER 539



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K +I + +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A  
Sbjct: 83  LPVSQRKDDIAEAIKHNQVVIVAGETGSGKTTQLPKICMELGRGTHGMIGHTQPRRLAAR 142

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ R+A E   +  + VGY++RF     +++++  +T+G+LL
Sbjct: 143 TVATRIAEEMECELGSYVGYKVRFNDQVSDRSQVKLMTDGILL 185



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FLS YD +++DE HER L+ DF++G ++ LL    ++K+++ SATI+ E F  
Sbjct: 186  AEIQNDRFLSQYDTIIIDEAHERSLNIDFIMGYLRELLPKRPDLKVVITSATIDPERFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 41.6 bits (96), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FLS YD +I+DE HER L  DF++G +
Sbjct: 186 AEIQNDRFLSQYDTIIIDEAHERSLNIDFIMGYL 219


>gi|150864398|ref|XP_001383188.2| hypothetical protein PICST_81358 [Scheffersomyces stipitis CBS 6054]
 gi|149385654|gb|ABN65159.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 1407

 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 162/472 (34%), Positives = 260/472 (55%), Gaps = 27/472 (5%)

Query: 299  GVIKCLLHSTVEVAADNFLSSYDVL---VLDEIHERHLHGDFLLGVIKCLLHSTAEVKII 355
            GV+  +L S +  ++ +  S +D L    +DE+HER +  DFLL ++K  ++    +KI+
Sbjct: 691  GVLLRMLQSFLASSSSHQTSIFDELEYIFIDEVHERSVDSDFLLIILKKTMNRFPNLKIV 750

Query: 356  LMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEY--HPIVELD------------RTKS 401
            LMSATI++E+F  +FN     I + GR +PI+  Y    I ++D            R  S
Sbjct: 751  LMSATISVEIFKNFFNTPLNHIHIEGRTFPIEDYYLDQIIDDIDYTVETANGIVKPRADS 810

Query: 402  EKLDPGP-----YIRI-LSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQE-YNEKSQG 454
               + G        R+ L I DK       G +LIF+ GI EI+  V   +  ++++ + 
Sbjct: 811  HYFEKGNINFDLVARLCLHIDDKLDSEGNDGSILIFLPGIMEINQCVSIIERAFSKRDKP 870

Query: 455  WIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYD 514
               LPLHS LS  EQ RVF    +G RK +VSTN+AETSITI     VVD G+ K M YD
Sbjct: 871  SWTLPLHSALSSMEQKRVFKVPAKGTRKIVVSTNVAETSITIPDCVVVVDGGRSKTMFYD 930

Query: 515  VTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDS 574
                 + L E W SKA   QR+GR+GR   G CY LY++E  + + + + PEI+R  +++
Sbjct: 931  PEKNTTRLIENWCSKAEIGQRRGRSGRVTNGNCYHLYTKEIETKMRQQAVPEIKRTRLEN 990

Query: 575  LLLSLVCMGLGDVRKF--PFLEAPPAENIESSVRSLTQHGAIDS-KERVTSLGRFLSDLP 631
            L L +  MG+  V +F    ++AP   ++++S + L + GA+D+  E ++ LG++LS LP
Sbjct: 991  LYLVVKSMGIRSVDEFLNSGIDAPDQSSLKTSKKFLKEIGALDADTEELSHLGKYLSYLP 1050

Query: 632  VDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLT 691
             D+  GK+L+ G +F  +D  L+LA++ S  +PF N A +  + +  R+E   N GD + 
Sbjct: 1051 TDLQSGKLLILGCIFGCLDICLTLASISSTGNPFFNLADKRAEIKQKRREFSQNQGDFVA 1110

Query: 692  VLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLI 743
            + NAY E+  +K++   +KK+     +      +++  R Q+  +L D G +
Sbjct: 1111 IANAYAEYDKMKQNGENTKKFISSNYLSFITLNDISSTRVQYISLLKDLGFV 1162



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 6/128 (4%)

Query: 17  LDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV 76
           L +K K     + K  + ++SLP  + K++++D +   +V ++ G+TG GKSTQI Q+++
Sbjct: 568 LAYKAKLTSKEMQKSLKQRSSLPAWKKKEQLVDVINSNKVTLVTGETGSGKSTQIVQFIL 627

Query: 77  -----QAGFQ-RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVF 130
                +  F  +I CTQPRRI+ + L+ R++ E L +     GY IR E    + T+I F
Sbjct: 628 DDMNSRGNFSGKIMCTQPRRISTLGLADRISEERLDKVGGETGYIIRGENKTSKDTRISF 687

Query: 131 ITEGLLLR 138
           +T G+LLR
Sbjct: 688 VTTGVLLR 695



 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 72/118 (61%), Gaps = 3/118 (2%)

Query: 809  RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPA 866
            R   G CY LY++E  + + + + PEI+R  +++L L +  MG+  V +F    ++AP  
Sbjct: 957  RVTNGNCYHLYTKEIETKMRQQAVPEIKRTRLENLYLVVKSMGIRSVDEFLNSGIDAPDQ 1016

Query: 867  ENIESSVRSLTQHGAIDS-KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             ++++S + L + GA+D+  E ++ LG++LS LP D+  GK+L+ G +F  +D  L L
Sbjct: 1017 SSLKTSKKFLKEIGALDADTEELSHLGKYLSYLPTDLQSGKLLILGCIFGCLDICLTL 1074



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 37/51 (72%)

Query: 1126 DVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            + + +DE+HER +  DFLL ++K  ++    +KI+LMSATI++E+F  +FN
Sbjct: 716  EYIFIDEVHERSVDSDFLLIILKKTMNRFPNLKIVLMSATISVEIFKNFFN 766



 Score = 44.7 bits (104), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 19/186 (10%)

Query: 1030 GAIDS-KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL----DLALNFVHHSE 1084
            GA+D+  E ++ LG++LS LP D+  GK+L+ G +F  +D  L L         F + ++
Sbjct: 1030 GALDADTEELSHLGKYLSYLPTDLQSGKLLILGCIFGCLDICLTLASISSTGNPFFNLAD 1089

Query: 1085 EEEEEEAGERLESMDANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLL 1144
            +  E +   R      N+ +F          VA  N  + YD +  +  + +       L
Sbjct: 1090 KRAEIKQKRR--EFSQNQGDF----------VAIANAYAEYDKMKQNGENTKKFISSNYL 1137

Query: 1145 GVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVTILKVILASG 1204
              I     S+  V+ I +   +   + H Y +R  +++      R++++  +++ I+ + 
Sbjct: 1138 SFITLNDISSTRVQYISLLKDLGF-VPHGYSHR-NRNVDFNFLNRNNENFGVIRAIITAS 1195

Query: 1205 LYPQVA 1210
             YPQ+A
Sbjct: 1196 FYPQIA 1201


>gi|392542742|ref|ZP_10289879.1| helicase, ATP-dependent [Pseudoalteromonas piscicida JCM 20779]
          Length = 1297

 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/440 (34%), Positives = 243/440 (55%), Gaps = 14/440 (3%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E+  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  +
Sbjct: 175 EIQQDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSKH 234

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F+  A II+V GR YP+++ Y P+ ++D    E  +      I   +D+       GD+L
Sbjct: 235 FSD-APIIEVSGRTYPVEVRYRPVEDVDSQNGEA-ENDQLQGIFDAVDELCAEGP-GDIL 291

Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
           +FM+G  EI     A  + N K  G  +LPL++ LS  EQ+R+F  AP   R+ ++STN+
Sbjct: 292 VFMNGEREIRDTADALAKRNLK--GVEILPLYARLSNAEQNRIF--APHSQRRIVLSTNV 347

Query: 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYR 549
           AETS+T+ GIR+V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C R
Sbjct: 348 AETSLTVPGIRYVIDPGTARISCYSYRTKVQRLPIEAVSQASANQRKGRCGRVASGICIR 407

Query: 550 LYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLT 609
           LYSE+ +    E++ PEI R ++ S++L ++ +GLGD+ +FPF++AP + NI+  +  L 
Sbjct: 408 LYSEDDFLGRPEFTDPEILRTNLASVILQMLALGLGDISQFPFVQAPDSRNIKDGMSLLE 467

Query: 610 QHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           +  AI       K ++T  GR LS LP+D  L KM++ G+  + +   + + A LS+Q P
Sbjct: 468 ELEAIVPAQRREKAKLTESGRKLSRLPIDPRLAKMVMSGAQNNALWEAIVITAALSIQDP 527

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQR 722
                 +    +      E  H D +  LN +      ++   R+  +K C++  +   R
Sbjct: 528 RERPQDKRAAADEKHNRFECEHSDFVAYLNLWNYIEAQQQALTRNQFRKQCQKDFLAYMR 587

Query: 723 FYEVTKLRSQFKQVLGDSGL 742
             E   +  Q   V  + G 
Sbjct: 588 VREWQDIIYQLTTVCEELGF 607



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 80/134 (59%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L ++ +GLGD+ +FPF++AP + N
Sbjct: 399 RVASGICIRLYSEDDFLGRPEFTDPEILRTNLASVILQMLALGLGDISQFPFVQAPDSRN 458

Query: 869 IESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  +  L +  AI       K ++T  GR LS LP+D  L KM++ G+  + +   +++
Sbjct: 459 IKDGMSLLEELEAIVPAQRREKAKLTESGRKLSRLPIDPRLAKMVMSGAQNNALWEAIVI 518

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 519 TAALSIQ--DPRER 530



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 3/108 (2%)

Query: 33  ETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPR 89
           E    LPV+Q K +I   +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPR
Sbjct: 66  EYPEQLPVSQKKDDIKAAIANNQVVIVAGETGSGKTTQLPKICLELGRGVDGYIGHTQPR 125

Query: 90  RIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           R+A  S+S R+A E   +    VG++IRF     + T +  +T+G+LL
Sbjct: 126 RLAARSVSTRIAEEIGCEMGQEVGFKIRFSDQVSDNTYVKLMTDGILL 173



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            ++  D FL+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  +
Sbjct: 175  EIQQDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSKH 234

Query: 1175 FNRIAKDLLSGST 1187
            F+      +SG T
Sbjct: 235  FSDAPIIEVSGRT 247


>gi|339999455|ref|YP_004730338.1| ATP-dependent helicase HrpA [Salmonella bongori NCTC 12419]
 gi|339512816|emb|CCC30558.1| ATP-dependent helicase HrpA [Salmonella bongori NCTC 12419]
          Length = 1300

 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 159/445 (35%), Positives = 244/445 (54%), Gaps = 25/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIID--KKYPRTER 425
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L         +I D  ++      
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ--------AIFDAVEELGHESA 290

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GD+LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ ++
Sbjct: 291 GDILIFMSGEREIRDTADALSKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVL 346

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G
Sbjct: 347 ATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEG 406

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE  +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 407 ICIRLYSENDFLSRPAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGV 466

Query: 606 RSLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           R L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS
Sbjct: 467 RLLEELGAITTSEQQTTYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALS 526

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   
Sbjct: 527 IQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRTDY 585

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + G+
Sbjct: 586 LNYLRVREWQDIYTQLRQVVKELGI 610



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE  +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSENDFLSRPAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKERVTT-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E+ TT     LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTSEQQTTYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|288549617|ref|ZP_05967602.2| ATP-dependent helicase HrpA [Enterobacter cancerogenus ATCC 35316]
 gi|288318574|gb|EFC57512.1| ATP-dependent helicase HrpA [Enterobacter cancerogenus ATCC 35316]
          Length = 1301

 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 160/444 (36%), Positives = 247/444 (55%), Gaps = 22/444 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE--LDRTKSEKLDPGPYIRILSIIDKKYPRTERG 426
           +F+  A II+V GR YP+++ Y PIVE   D T+ ++L       I   +D+       G
Sbjct: 240 HFSN-APIIEVSGRTYPVEVRYRPIVEEEADDTERDQLQA-----IFDAVDE-LGNESAG 292

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFMSG  EI     A  + + +     +LPL++ LS  EQ+RVF  A  G R+ +++
Sbjct: 293 DILIFMSGEREIRDTADALSKRDLRHTE--ILPLYARLSNSEQNRVFQ-AHSG-RRIVLA 348

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+
Sbjct: 349 TNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGI 408

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR
Sbjct: 409 CIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVR 468

Query: 607 SLTQHGAIDSKERVTS-----LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            L + GAI + E+ T+     LGR LS LPVD  L +M++       +   + + + LS+
Sbjct: 469 LLEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSI 528

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGI 718
           Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   +
Sbjct: 529 QDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFL 587

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL 742
              R  E   + +Q +QV+ + G+
Sbjct: 588 NYLRVREWQDIYTQLRQVVKELGI 611



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 402 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 461

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 462 NIQDGVRLLEELGAITTDEQATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 521

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 522 ITSALSIQ--DPRER 534



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+II+ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDIIEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 240  HFSNAPIIEVSGRT 253


>gi|308809405|ref|XP_003082012.1| mRNA splicing factor ATP-dependent RNA helicase (ISS) [Ostreococcus
            tauri]
 gi|116060479|emb|CAL55815.1| mRNA splicing factor ATP-dependent RNA helicase (ISS), partial
            [Ostreococcus tauri]
          Length = 1680

 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 181/548 (33%), Positives = 299/548 (54%), Gaps = 47/548 (8%)

Query: 227  QVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADYFLSSYDVLVLDE 286
            ++ TD  L+    +++DEVHER L  DFLL VI   L    +    D+ L +    V  E
Sbjct: 559  RLQTDPNLTGVSHVVVDEVHERDLLSDFLL-VILRSLTARRK----DFHLVAMSATVNAE 613

Query: 287  IHERHLHGDFLLGVIKCLLHST---VEVAADNF-LSSYDVLVLDEIHERHLHGD--FLLG 340
            + + +  G          LH+T   VE+    F ++ Y +    E        D  F LG
Sbjct: 614  LFKNYFEGH---------LHTTCPVVEIPGRTFPVTEYRLEDAIEATGYVCEPDSEFALG 664

Query: 341  VIKCLLHSTAEVKIILMSATINI-ELFHTYFNRIA--KIIKVPGRLYPIQLEYHPIV--E 395
            V         ++     +    + E     F R A  ++ +    +YP   EY       
Sbjct: 665  VEPSRGGRVFKMPGAGGARGAALREAVEDSFERTAMSEVRQETRDMYP---EYSETTWKS 721

Query: 396  LDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSI---VRAAQEYNEKS 452
            L     EK++      ++++I  +Y   E G +LIF+ G++EI ++   +RA  E  EK 
Sbjct: 722  LQTIDEEKINYELMESLVALIADEY---EEGAILIFLPGMAEIRTLHDQLRANLEDVEKR 778

Query: 453  QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMS 512
              ++++PLHSTLS EEQ   F   P G+RK +++TNIAETSITI+ + FV+DSG+V+E  
Sbjct: 779  --FLLIPLHSTLSSEEQRLTFSRPPPGVRKVVMATNIAETSITIEDVVFVIDSGRVRETQ 836

Query: 513  YDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS-EEQYSLLAEYSTPEIRRVS 571
            YD   +MS L   W SKAS+ QR+GRAGR   G C+ +YS + + ++L +++TPEI R  
Sbjct: 837  YDPVTRMSALVTAWCSKASSRQRRGRAGRVREGYCFHMYSTKTEATVLEDFTTPEILRTP 896

Query: 572  IDSLLLSLVCMGLGDVRKF--PFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSD 629
            +D+L L +  +GLGD+RKF    +E PP + I S+++SL +  A+DSK+ +T+LG  L++
Sbjct: 897  LDALCLQIKILGLGDIRKFLSMAIEPPPEDAIASALKSLYELDAVDSKDELTALGHHLAE 956

Query: 630  LPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDP 689
            LPVD  LGKM+++G+MF  +D VL++AA +  +SPF     +  + + A++++ ++  D 
Sbjct: 957  LPVDARLGKMMLYGAMFSCLDPVLTIAAGVGFRSPFMAPMDKRDEADAAKRKIAADASDH 1016

Query: 690  LTVLNAYKEWLGVK-KDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVL-------GDSG 741
            LT++ AY  W+  + K R   + +  +  +  Q   +++++R Q+ ++L         +G
Sbjct: 1017 LTLVRAYAGWVHARAKGRGFERDYLSKLFLSGQTLKQISEMRQQYTELLDQIGFLRSGAG 1076

Query: 742  LITDIPGP 749
            ++ D P P
Sbjct: 1077 VLGDAPSP 1084



 Score =  103 bits (256), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 83/124 (66%), Gaps = 3/124 (2%)

Query: 809 RTGPGVCYRLYSEE-QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPP 865
           R   G C+ +YS + + ++L +++TPEI R  +D+L L +  +GLGD+RKF    +E PP
Sbjct: 865 RVREGYCFHMYSTKTEATVLEDFTTPEILRTPLDALCLQIKILGLGDIRKFLSMAIEPPP 924

Query: 866 AENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
            + I S+++SL +  A+DSK+ +T LG  L++LPVD  LGKM+++G+MF  +D +L +  
Sbjct: 925 EDAIASALKSLYELDAVDSKDELTALGHHLAELPVDARLGKMMLYGAMFSCLDPVLTIAA 984

Query: 926 ALNF 929
            + F
Sbjct: 985 GVGF 988



 Score = 97.1 bits (240), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 76/125 (60%), Gaps = 7/125 (5%)

Query: 22  KEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ---- 77
           KEK      ++E +  LP ++ K  +++++      +I+G TGCGK+TQ+PQ++ +    
Sbjct: 435 KEKSKEWRDMQEVRRKLPASELKSVVLESIEASSAAVISGATGCGKTTQVPQFIFEEAIR 494

Query: 78  ---AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEG 134
               G   I  TQPRR++ I++++RVA E   +  + VGY IR E  + EKT+++F T G
Sbjct: 495 AGKGGETNIIITQPRRLSAIAVAERVANERCERIGDSVGYSIRLESRQSEKTRMLFCTTG 554

Query: 135 LLLRQ 139
           +LLR+
Sbjct: 555 ILLRR 559



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 133/310 (42%), Gaps = 38/310 (12%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEEE 1086
            A+DSK+ +T+LG  L++LPVD  LGKM+++G+MF  +D +L +   +     F+   ++ 
Sbjct: 940  AVDSKDELTALGHHLAELPVDARLGKMMLYGAMFSCLDPVLTIAAGVGFRSPFMAPMDKR 999

Query: 1087 EEEEAGERLESMDANE-----------VEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHE 1135
            +E +A +R  + DA++           V  R K    +    +  FLS   +  + E+ +
Sbjct: 1000 DEADAAKRKIAADASDHLTLVRAYAGWVHARAKGRGFERDYLSKLFLSGQTLKQISEMRQ 1059

Query: 1136 RHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVT 1195
            ++      +G ++       +    +++  I  +      +R+   L   S    ++   
Sbjct: 1060 QYTELLDQIGFLRSGAGVLGDAPSPVLAPKITTK---GRRHRLESALSEASVNAGNE--A 1114

Query: 1196 ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDD 1255
            +++ ++ +GLYP VA             A     D    S +P S  T     +R   D 
Sbjct: 1115 LVRAVICAGLYPNVACAS----------AQAKTDDSRARSRYPSSSVT-----VRTKHDS 1159

Query: 1256 IVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNSD 1315
             V   P     G N   S    L+Y   + T+K +L +   + +   LLLF   I  + +
Sbjct: 1160 DVHLHPTSVCYGLNRFDSP--FLLYHEKVRTTKVYLRDATAVGSY-PLLLFGGKIKIDHE 1216

Query: 1316 FTRLVFDSWI 1325
             ++   D WI
Sbjct: 1217 RSKASCDGWI 1226



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 36/49 (73%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNF 1029
            A+DSK+ +T+LG  L++LPVD  LGKM+++G+MF  +D +L +   + F
Sbjct: 940  AVDSKDELTALGHHLAELPVDARLGKMMLYGAMFSCLDPVLTIAAGVGF 988



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 9/70 (12%)

Query: 1106 RLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 1165
            RL+ DP          L+    +V+DE+HER L  DFLL +++ L     +  ++ MSAT
Sbjct: 559  RLQTDPN---------LTGVSHVVVDEVHERDLLSDFLLVILRSLTARRKDFHLVAMSAT 609

Query: 1166 INIELFHTYF 1175
            +N ELF  YF
Sbjct: 610  VNAELFKNYF 619


>gi|240274879|gb|EER38394.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus H143]
          Length = 1210

 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 155/434 (35%), Positives = 238/434 (54%), Gaps = 22/434 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E+  D  L  Y V++LDE HER +  D L G++K  +    ++KII+ SAT++ + F  Y
Sbjct: 650  EILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTIQRRPDLKIIVTSATLDADKFSEY 709

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            FN +  I  +PGR YP+++ Y         +S+ LD    + ++ I    +     GD+L
Sbjct: 710  FN-MCPIFSIPGRTYPVEIMYS-----REPESDYLDAA-LVTVMQI----HLTEPAGDIL 758

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   K+ G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 759  LFLTGQEEIDTACEILYE-RMKALGPSVPELIILPVYSALPSEMQSRIFEPAPPGSRKVV 817

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETSITID I +VVD G VK+ +YD    M +L    IS+A A+QR GRAGRTGP
Sbjct: 818  IATNIAETSITIDQIYYVVDPGFVKQNAYDPKLGMDSLVVTPISQAQAKQRSGRAGRTGP 877

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP   + +
Sbjct: 878  GKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLT 937

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L    A+D +  +T LGR ++D P++  L K+L+        D +LS+ A+LSV S
Sbjct: 938  ALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVEMGCSDEMLSIVAMLSVHS 997

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +    HGD LT+LN Y  W    K+   S  WC    I+ ++ 
Sbjct: 998  IFYRPKEKQQQADQKKAKFHDPHGDHLTLLNVYNGW----KNSRFSSPWCFENFIQARQM 1053

Query: 724  YEVTKLRSQFKQVL 737
              V  +R Q   ++
Sbjct: 1054 RRVQDVREQLVTIM 1067



 Score =  107 bits (266), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 87/135 (64%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EWK + ++     Q     T M +++ + SLPV ++++++++ V + +++I+ GDTG GK
Sbjct: 519 EWKRVTQSK---DQSYGKRTNMTMKQQRESLPVFKFRKQLLEAVTENQLLIVVGDTGSGK 575

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQ+ QYL + GF     I CTQPRR+A +S++KRV+ E   +    VGY IRFE     
Sbjct: 576 TTQLTQYLAEGGFANNGIIGCTQPRRVAAVSVAKRVSEEVGCRLGAEVGYTIRFEDCTSP 635

Query: 125 KTKIVFITEGLLLRQ 139
           +TKI ++T+G+L R+
Sbjct: 636 ETKIKYMTDGILQRE 650



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 1/126 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP 
Sbjct: 873 GRTGPGKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPT 932

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
             + +++  L    A+D +  +T LGR ++D P++  L K+L+        D ML +   
Sbjct: 933 NTMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVEMGCSDEMLSIVAM 992

Query: 927 LNFGAI 932
           L+  +I
Sbjct: 993 LSVHSI 998



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q ++  D  L  Y V++LDE HER +  D L G++K  +    ++KII+ SAT++ + F 
Sbjct: 648  QREILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTIQRRPDLKIIVTSATLDADKFS 707

Query: 1173 TYFN 1176
             YFN
Sbjct: 708  EYFN 711


>gi|432899979|ref|XP_004076667.1| PREDICTED: putative ATP-dependent RNA helicase DHX33-like [Oryzias
           latipes]
          Length = 681

 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 155/468 (33%), Positives = 256/468 (54%), Gaps = 32/468 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E   D  L  Y V+VLDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 152 EAIGDPLLLKYTVVVLDEAHERTVHTDVLFGVVKTAQRRRRELNKIPLKVIVMSATMDVD 211

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSIIDKKYPR 422
           LF  YFN+ + ++ + GR +PIQ+ Y        TK ++ D   Y++  ++SI       
Sbjct: 212 LFSEYFNK-SPVLYLEGRQHPIQIFY--------TKHQQSD---YLQAALVSIFQIHQEA 259

Query: 423 TERGDVLIFMSGISEISSIVRAAQEYN----EKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
               D+L+FM+G  EI ++ R  ++ +    +     +VLPL+++L   +Q RVF  AP+
Sbjct: 260 PPAHDILVFMTGQEEIEALARTCRDISKHVPDGCGSMVVLPLYASLPPVQQLRVFQPAPK 319

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
             RK I+STNIAETS+TI GI++V+D+G VK   ++  + +  L    +SKA A QR GR
Sbjct: 320 SCRKVILSTNIAETSVTISGIKYVIDTGMVKAKRFNPDSGLEVLAVQRVSKAQAWQRAGR 379

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
           AGR   G CYRLY+E+++      + PEI+R ++  ++L L+ +G+ DV  F F+  P  
Sbjct: 380 AGREESGFCYRLYTEQEFDNFLPMTVPEIQRCNLAGVMLQLMALGIPDVMNFDFMSKPSP 439

Query: 599 ENIESSVRSLTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           E + S+V  L   GA++ +E    +T LG+ ++  P++    K ++    +   + +LS+
Sbjct: 440 EAVRSAVDHLELLGAVEKREGQVLLTPLGKKMASFPLEPRYAKTILLSPEYSCSEEILSI 499

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKR 715
             +LSV +   N   R  D   ARK+  ++ GD +T+LN Y+ +  V  +    K+WC+ 
Sbjct: 500 VCLLSVDTVLYNPPARRDDVLAARKKFMTSEGDHMTLLNIYRAFKKVSGN----KEWCRE 555

Query: 716 RGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHG 763
             +  +    V  +++Q + +     L  +  G D   +S  R L HG
Sbjct: 556 NFVNSRNMGLVKDVQAQLRDICLKLNLKLESCGSDT--ASVRRCLAHG 601



 Score =  103 bits (258), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 82/125 (65%), Gaps = 5/125 (4%)

Query: 21  QKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF 80
           +K   ST ++++  Q  LP+ Q K  +++ + + +  II G+TG GK+TQIPQYL +AG 
Sbjct: 33  KKGNVSTPIEVQRKQ--LPIYQAKPHLLNQLRQLQNAIIIGETGSGKTTQIPQYLYEAGI 90

Query: 81  QR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            R   +A TQPRR+A ISL+ RVA E  +Q   LVGY +RFE     +TK+ F+T+G+LL
Sbjct: 91  GRLGMVAITQPRRVAAISLAGRVAEEKRTQIGKLVGYTVRFEDVTSSETKLKFMTDGMLL 150

Query: 138 RQDSG 142
           R+  G
Sbjct: 151 REAIG 155



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 59/105 (56%), Gaps = 3/105 (2%)

Query: 813 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 872
           G CYRLY+E+++      + PEI+R ++  ++L L+ +G+ DV  F F+  P  E + S+
Sbjct: 386 GFCYRLYTEQEFDNFLPMTVPEIQRCNLAGVMLQLMALGIPDVMNFDFMSKPSPEAVRSA 445

Query: 873 VRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVFGSMF 914
           V  L   GA++ +E    +T LG+ ++  P++    K ++    +
Sbjct: 446 VDHLELLGAVEKREGQVLLTPLGKKMASFPLEPRYAKTILLSPEY 490



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 12/114 (10%)

Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
            A++      EE+  + G+      R E + ++E + +   D   ++ A  D  L  Y V+
Sbjct: 106  AISLAGRVAEEKRTQIGKLVGYTVRFEDVTSSETKLKFMTDGMLLREAIGDPLLLKYTVV 165

Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHTYFNR 1177
            VLDE HER +H D L GV+K       E     +K+I+MSAT++++LF  YFN+
Sbjct: 166  VLDEAHERTVHTDVLFGVVKTAQRRRRELNKIPLKVIVMSATMDVDLFSEYFNK 219


>gi|427793631|gb|JAA62267.1| Putative mrna splicing factor atp-dependent rna helicase, partial
            [Rhipicephalus pulchellus]
          Length = 1217

 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 146/430 (33%), Positives = 245/430 (56%), Gaps = 19/430 (4%)

Query: 317  LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
            L  Y  +++DE HER L  + L G+++ ++    ++K+I+ SAT++   F T+F  +  +
Sbjct: 636  LDQYSAVIMDEAHERSLSTEVLFGLLREVVARRQDLKLIVTSATMDATKFATFFGNVP-V 694

Query: 377  IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
              +PGR +P++L +       +   E        + L I    + + + GD+L+FM G  
Sbjct: 695  FTIPGRTFPVELFF------SKNPVEDYVDAAVKQTLQI----HLQPQVGDILVFMPGQE 744

Query: 437  EISSIVR-AAQEYNE--KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETS 493
            +I       A+   E   +    +LP++S L  + Q ++F  AP+G+RKC+V+TNIAETS
Sbjct: 745  DIEVTCELIAERLGEIDNAPPLAILPIYSQLPSDLQAKIFQKAPDGVRKCVVATNIAETS 804

Query: 494  ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553
            +T+DGI FVVDSG  K   Y+    M  LQ + +S+A+A QR GRAGRTGPG C+RLY++
Sbjct: 805  LTVDGISFVVDSGYCKLKVYNPRIGMDALQIYPVSQANANQRSGRAGRTGPGTCFRLYTD 864

Query: 554  EQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHG 612
             QY + L + + PEI+R ++ +++L L  +G+ D+ +F F++ PP +NI +S+  L   G
Sbjct: 865  HQYKNELLKTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPQDNILNSMYQLWILG 924

Query: 613  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRD 672
            A+D+   +T LGR + + P+D PL KM++        + +L++ ++LSV S F     R+
Sbjct: 925  ALDNVGTLTPLGRHMVEFPLDPPLSKMVIVSCDMGCSEEILTIVSMLSVPSIFYRPKGRE 984

Query: 673  PDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQ 732
             D + AR++ +    D LT LN + +W    K    S  WC    I  +   +V ++R Q
Sbjct: 985  EDSDAAREKFQVPESDHLTFLNVFLQW----KINHYSSSWCNEHFIHVKSMRKVREVRQQ 1040

Query: 733  FKQVLGDSGL 742
             K ++G   +
Sbjct: 1041 LKDIMGQQKM 1050



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 79/125 (63%), Gaps = 3/125 (2%)

Query: 18  DFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77
           D +   +FS    + + +  LPV   +QE++  + +  +VII G+TG GK+TQ+ QYL +
Sbjct: 505 DSQGTSEFSRKKTLTQQRQYLPVFAARQELLRIIRENSIVIIVGETGSGKTTQLTQYLHE 564

Query: 78  AGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEG 134
            G+ +   I CTQPRR+A +S++KRV+ E   +    VGY IRFE    EKT I ++T+G
Sbjct: 565 DGYSKYGMIGCTQPRRVAAMSVAKRVSDEMGCKLGEEVGYAIRFEDCTCEKTIIKYMTDG 624

Query: 135 LLLRQ 139
           +LLR+
Sbjct: 625 ILLRE 629



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 70/102 (68%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG C+RLY++ QY + L + + PEI+R ++ +++L L  +G+ D+ +F F++ PP +
Sbjct: 852 RTGPGTCFRLYTDHQYKNELLKTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPQD 911

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
           NI +S+  L   GA+D+   +T LGR + + P+D PL KM++
Sbjct: 912 NILNSMYQLWILGALDNVGTLTPLGRHMVEFPLDPPLSKMVI 953



 Score = 45.8 bits (107), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 38/66 (57%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L  Y  +++DE HER L  + L G+++ ++    ++K+I+ SAT++   F T+F  +   
Sbjct: 636  LDQYSAVIMDEAHERSLSTEVLFGLLREVVARRQDLKLIVTSATMDATKFATFFGNVPVF 695

Query: 1182 LLSGST 1187
             + G T
Sbjct: 696  TIPGRT 701


>gi|380018977|ref|XP_003693395.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor
           ATP-dependent RNA helicase PRP16-like [Apis florea]
          Length = 1137

 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/427 (35%), Positives = 241/427 (56%), Gaps = 23/427 (5%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F  +F   A  
Sbjct: 554 LDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDSSKFSAFFGNAA-T 612

Query: 377 IKVPGRLYPIQLEY--HPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
            ++PGR +P+++ +  +P+        E        ++L I     PR+  GDVL+FM G
Sbjct: 613 FQIPGRTFPVEVLHAKNPV--------EDYVDAAVKQVLQI--HLQPRS--GDVLVFMPG 660

Query: 435 ISEISSIVRAAQEY---NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAE 491
             +I     A +E     E +    +LP++S L  + Q ++F  +  GLRKC+V+TNIAE
Sbjct: 661 QEDIEVTCEALKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRSEGGLRKCVVATNIAE 720

Query: 492 TSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLY 551
           TS+T+DGI FVVDSG  K   Y+    M  LQ + +S+A+A+QR GRAGRTGPG CYRLY
Sbjct: 721 TSLTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRAGRAGRTGPGTCYRLY 780

Query: 552 SEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQ 610
           +  QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +NI +S+  L  
Sbjct: 781 TRRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQLWI 840

Query: 611 HGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAF 670
            GA+D   R+T LGR +++ P+D P  +ML+  S       +L + ++LSV S F     
Sbjct: 841 LGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSIFYRPKG 900

Query: 671 RDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLR 730
           R+ D ++AR++ +    D LT LN Y +W    K    S  WC    I  +   +V ++R
Sbjct: 901 REEDSDSAREKFQVPESDHLTYLNVYNQW----KANGYSSSWCNDHFIHAKAMRKVREVR 956

Query: 731 SQFKQVL 737
            Q +++L
Sbjct: 957 QQLEEIL 963



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 84/137 (61%), Gaps = 15/137 (10%)

Query: 18  DFKQKEKFSTLMK------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGC 65
           DFK  +K++  ++            I+  + SLPV   +QE+++ + +  VV+I G+TG 
Sbjct: 411 DFKAGQKYARHIRNDEVTGEAKYRSIQYQRRSLPVFAVRQELLNVIRENSVVVIVGETGS 470

Query: 66  GKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR 122
           GK+TQ+ QYL + G+     I CTQPRR+A +S++KRV+ E  +   + VGY IRFE   
Sbjct: 471 GKTTQLTQYLHEDGYSHYGIIGCTQPRRVAAMSVAKRVSDEMATTLGDKVGYAIRFEDCT 530

Query: 123 REKTKIVFITEGLLLRQ 139
            + T I ++T+G+LLR+
Sbjct: 531 SKDTVIKYMTDGILLRE 547



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+  QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +
Sbjct: 770 RTGPGTCYRLYTRRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQD 829

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           NI +S+  L   GA+D   R+T LGR +++ P+D P  +ML+  S       +L++   L
Sbjct: 830 NILNSLYQLWILGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSML 889

Query: 928 NFGAI 932
           +  +I
Sbjct: 890 SVPSI 894



 Score = 47.4 bits (111), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F  +F   A  
Sbjct: 554  LDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDSSKFSAFFGNAATF 613

Query: 1182 LLSGST 1187
             + G T
Sbjct: 614  QIPGRT 619


>gi|284031577|ref|YP_003381508.1| ATP-dependent helicase HrpA [Kribbella flavida DSM 17836]
 gi|283810870|gb|ADB32709.1| ATP-dependent helicase HrpA [Kribbella flavida DSM 17836]
          Length = 1310

 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 169/485 (34%), Positives = 261/485 (53%), Gaps = 35/485 (7%)

Query: 278 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337
            Y V   D++ ER L      G+   LL+   E+  D  LS YD L++DE HER L+ DF
Sbjct: 149 GYAVRFTDKVSERSLVKLMTDGI---LLN---ELQRDRDLSRYDTLIIDEAHERSLNIDF 202

Query: 338 LLGVIKCLLHSTAEVKIILMSATINIELFHTYFN----RIAKIIKVPGRLYPIQLEYHPI 393
           +LG +K LL    ++K+++ SATI+ E F  +F+    + A I++V GR YP+++ Y P+
Sbjct: 203 ILGYLKQLLPRRPDLKVVITSATIDPERFAEHFSDAEGKPAPIVEVSGRTYPVEVRYRPV 262

Query: 394 VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQ 453
            + D   +  LD      IL  +D+       GD+L+F+SG  EI     A  +   + +
Sbjct: 263 NDPDDPAT--LDRDQTQAILDAVDELMVEAP-GDILVFLSGEREIRDTADALNDKFAQQR 319

Query: 454 GWI----VLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVK 509
           G      VLPL++ LS  EQ RVF   P G R+ +++TN+AETS+T+ GI++V+D G  +
Sbjct: 320 GRPGAVEVLPLYARLSNAEQHRVFQ--PHGNRRIVLATNVAETSLTVPGIKYVIDPGTAR 377

Query: 510 EMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRR 569
              Y    K+  L    +S+ASA QRKGR GRT  G+C RLYSEE +    E++ PEI R
Sbjct: 378 ISRYSHRTKVQHLPIEPVSQASANQRKGRCGRTSDGICIRLYSEEHFDSRPEFTDPEILR 437

Query: 570 VSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDS------KERVTSL 623
            ++ S++L +  +GLGD+  FPF++ P   +I   V+ LT+ GAIDS        R+T +
Sbjct: 438 TNLASVILQMTSIGLGDIAAFPFIDEPDRRSITDGVQLLTELGAIDSTRRTDRNRRLTDV 497

Query: 624 GRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELE 683
           GR L+ +P+D  L +M+V       +  V+ +AA LS+Q P      R  D E    +  
Sbjct: 498 GRQLAQIPLDPRLARMVVEADKHGCVREVMVIAAALSIQDPRE----RPTDAEAQATQQH 553

Query: 684 SNHGDPLT-VLNAYKEWLGVKKDRV-----RSKKWCKRRGIEEQRFYEVTKLRSQFKQVL 737
           +   DP +  L     W  +KK +      + ++ C+   +   R  E   + +Q +QV 
Sbjct: 554 ARFRDPTSDFLGFLNLWNYLKKQQKELSGNQFRRMCRAEYLNYLRVREWQDIFAQLRQVA 613

Query: 738 GDSGL 742
           G  G+
Sbjct: 614 GQIGV 618



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 8/138 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD+  FPF++ P   
Sbjct: 408 GRTSDGICIRLYSEEHFDSRPEFTDPEILRTNLASVILQMTSIGLGDIAAFPFIDEPDRR 467

Query: 868 NIESSVRSLTQHGAIDS------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           +I   V+ LT+ GAIDS        R+T +GR L+ +P+D  L +M+V       +  ++
Sbjct: 468 SITDGVQLLTELGAIDSTRRTDRNRRLTDVGRQLAQIPLDPRLARMVVEADKHGCVREVM 527

Query: 922 LLDLALNFGAIDSKERVT 939
           ++  AL+    D +ER T
Sbjct: 528 VIAAALSIQ--DPRERPT 543



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 67/105 (63%), Gaps = 3/105 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACI 94
           LPV+Q K +I   +   +VV+IAG+TG GK+TQIP+  ++ G      I  TQPRR+A  
Sbjct: 71  LPVSQLKDDIAAAIRDHQVVVIAGETGSGKTTQIPKICLELGRGVQGLIGHTQPRRLAAR 130

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           ++++R+A E  ++  + +GY +RF     E++ +  +T+G+LL +
Sbjct: 131 TVAERIAEELGTELGDTIGYAVRFTDKVSERSLVKLMTDGILLNE 175



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            D  LS YD L++DE HER L+ DF+LG +K LL    ++K+++ SATI+ E F  +F+
Sbjct: 179  DRDLSRYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVVITSATIDPERFAEHFS 236


>gi|295670043|ref|XP_002795569.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
            [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226284654|gb|EEH40220.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
            [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 1224

 Score =  255 bits (651), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 156/434 (35%), Positives = 238/434 (54%), Gaps = 22/434 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E+  D  L  Y V++LDE HER +  D L G++K  L    ++K+I+ SAT++ + F  Y
Sbjct: 664  EILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTLKRRHDLKVIVTSATLDADRFSEY 723

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            FN +  I  +PGR YP+++ Y    E     S+ LD    + ++ I    +     GD+L
Sbjct: 724  FN-MCPIFSIPGRTYPVEIMYSREPE-----SDYLDAA-LVTVMQI----HLTEPAGDIL 772

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   K+ G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 773  LFLTGQEEIDTACEILYE-RMKALGPSVPELIILPVYSALPSEMQSRIFDPAPPGSRKVV 831

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETSITID I +VVD G VK+ +YD    M +L    IS+A A+QR GRAGRTGP
Sbjct: 832  IATNIAETSITIDQIYYVVDPGFVKQNAYDPKLGMDSLVVTPISQAQAKQRSGRAGRTGP 891

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP   + +
Sbjct: 892  GKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLT 951

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L    A+D +  +T LGR ++D P++  L K+L+        D +LS+ A+LSVQS
Sbjct: 952  ALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVDMGCSDEMLSIVAMLSVQS 1011

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +    HGD LT+LN Y  W    K+   S  WC    I+ ++ 
Sbjct: 1012 VFYRPKEKQQQADQKKAKFHDPHGDHLTLLNVYNAW----KNSRFSNPWCFENFIQARQM 1067

Query: 724  YEVTKLRSQFKQVL 737
                 +R Q   ++
Sbjct: 1068 RRAQDVREQLVTIM 1081



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 87/135 (64%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EWK + ++     Q     T M +++ + SLPV ++++++++ + + +++I+ GDTG GK
Sbjct: 533 EWKRVTQSK---DQSFGKRTNMTMKQQRESLPVFKFRKQLLEAIRENQLLIVVGDTGSGK 589

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQ+ QYL + GF     I CTQPRR+A +S++KRV+ E   +    VGY IRFE     
Sbjct: 590 TTQLTQYLAEGGFANDGIIGCTQPRRVAAVSVAKRVSEEVGCRLGAEVGYTIRFEDCTSP 649

Query: 125 KTKIVFITEGLLLRQ 139
           +TKI ++T+G+L R+
Sbjct: 650 ETKIKYMTDGILQRE 664



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 1/114 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP  
Sbjct: 888  RTGPGKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTN 947

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
             + +++  L    A+D +  +T LGR ++D P++  L K+L+        D ML
Sbjct: 948  TMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVDMGCSDEML 1001



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q ++  D  L  Y V++LDE HER +  D L G++K  L    ++K+I+ SAT++ + F 
Sbjct: 662  QREILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTLKRRHDLKVIVTSATLDADRFS 721

Query: 1173 TYFN 1176
             YFN
Sbjct: 722  EYFN 725


>gi|225684289|gb|EEH22573.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
            [Paracoccidioides brasiliensis Pb03]
          Length = 1224

 Score =  255 bits (651), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 156/434 (35%), Positives = 238/434 (54%), Gaps = 22/434 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E+  D  L  Y V++LDE HER +  D L G++K  L    ++K+I+ SAT++ + F  Y
Sbjct: 664  EILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTLKRRHDLKVIVTSATLDADRFSEY 723

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            FN +  I  +PGR YP+++ Y    E     S+ LD    + ++ I    +     GD+L
Sbjct: 724  FN-MCPIFSIPGRTYPVEIMYSREPE-----SDYLDAA-LVTVMQI----HLTEPAGDIL 772

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   K+ G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 773  LFLTGQEEIDTACEILYE-RMKALGPSVPELIILPVYSALPSEMQSRIFDPAPPGSRKVV 831

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETSITID I +VVD G VK+ +YD    M +L    IS+A A+QR GRAGRTGP
Sbjct: 832  IATNIAETSITIDQIYYVVDPGFVKQNAYDPKLGMDSLVVTPISQAQAKQRSGRAGRTGP 891

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP   + +
Sbjct: 892  GKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLT 951

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L    A+D +  +T LGR ++D P++  L K+L+        D +LS+ A+LSVQS
Sbjct: 952  ALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVDMGCSDEMLSIVAMLSVQS 1011

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +    HGD LT+LN Y  W    K+   S  WC    I+ ++ 
Sbjct: 1012 VFYRPKEKQQQADQKKAKFHDPHGDHLTLLNVYNAW----KNSRFSNPWCFENFIQARQM 1067

Query: 724  YEVTKLRSQFKQVL 737
                 +R Q   ++
Sbjct: 1068 RRAQDVREQLVTIM 1081



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 87/135 (64%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EWK + ++     Q     T M +++ + SLPV ++++++++ V + +++I+ GDTG GK
Sbjct: 533 EWKRVTQSK---DQSFGKRTNMTMKQQRESLPVFKFRKQLLEAVRENQLLIVVGDTGSGK 589

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQ+ QYL + GF     I CTQPRR+A +S++KRV+ E   +    VGY IRFE     
Sbjct: 590 TTQLTQYLAEGGFANDGIIGCTQPRRVAAVSVAKRVSEEVGCRLGAEVGYTIRFEDCTSP 649

Query: 125 KTKIVFITEGLLLRQ 139
           +TKI ++T+G+L R+
Sbjct: 650 ETKIKYMTDGILQRE 664



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 1/114 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP  
Sbjct: 888  RTGPGKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTN 947

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
             + +++  L    A+D +  +T LGR ++D P++  L K+L+        D ML
Sbjct: 948  TMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVDMGCSDEML 1001



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q ++  D  L  Y V++LDE HER +  D L G++K  L    ++K+I+ SAT++ + F 
Sbjct: 662  QREILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTLKRRHDLKVIVTSATLDADRFS 721

Query: 1173 TYFN 1176
             YFN
Sbjct: 722  EYFN 725


>gi|119476498|ref|ZP_01616849.1| ATP-dependent helicase HrpA [marine gamma proteobacterium HTCC2143]
 gi|119450362|gb|EAW31597.1| ATP-dependent helicase HrpA [marine gamma proteobacterium HTCC2143]
          Length = 1295

 Score =  255 bits (651), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 141/391 (36%), Positives = 224/391 (57%), Gaps = 8/391 (2%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD L++DE HER L+ DFLLG +K LL    ++KII+ SATI++E F  
Sbjct: 160 AEIQRDRFLNRYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDVERFSE 219

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A +I+V GR +P++  Y P+ +L    +E  D G  I +      +   + +GDV
Sbjct: 220 HFDN-APVIEVSGRTFPVETLYRPLEDL----TEDGDLGAAIEVAITELMEIESSAKGDV 274

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWI---VLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           L+F+SG  EI  + R  ++  +    W    VLPL++ LS  EQ++VF       R+ ++
Sbjct: 275 LVFLSGEGEIREVARHLRDVQQDDIRWQHCEVLPLYARLSNAEQNKVFSTNHRRGRRIVL 334

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GIR+VVD G  +   Y    K+  L    +S+ASA QR+GR GR   G
Sbjct: 335 ATNVAETSLTVPGIRYVVDPGYARISRYSFRTKVQRLPIEPVSQASANQRQGRCGRVAEG 394

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           VC RLY EE ++   E++ PEI+R ++ S++L ++ M +GDV  FPF++ P    I    
Sbjct: 395 VCIRLYDEEDFNSRPEFTDPEIQRTNLASVILQMLGMKMGDVESFPFVDPPDRRMISDGF 454

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
           + L + GA+DSK  +T +GR L+   VD  L +M++ G   + +  +L + + LS+Q P 
Sbjct: 455 KLLEELGAVDSKRILTDVGRILTRFQVDPRLARMIIAGKQHNCLREILVIVSALSIQDPR 514

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAY 696
              A +    +   +       D L+ +N +
Sbjct: 515 ERPADKRQASDDKHRRFWHKESDFLSFVNLW 545



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 2/129 (1%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   GVC RLY EE ++   E++ PEI+R ++ S++L ++ M +GDV  FPF++ P    
Sbjct: 390 RVAEGVCIRLYDEEDFNSRPEFTDPEIQRTNLASVILQMLGMKMGDVESFPFVDPPDRRM 449

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           I    + L + GA+DSK  +T +GR L+   VD  L +M++ G   + +  +L++  AL+
Sbjct: 450 ISDGFKLLEELGAVDSKRILTDVGRILTRFQVDPRLARMIIAGKQHNCLREILVIVSALS 509

Query: 929 FGAIDSKER 937
               D +ER
Sbjct: 510 IQ--DPRER 516



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LP+A  + +I + +   +V+I+AG+TG GK+TQ+P+  +Q G      I  TQPRR+A  
Sbjct: 57  LPIADKRDQIAEAISAHQVIILAGETGSGKTTQLPKICLQLGRGVTGLIGHTQPRRLAAR 116

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S+++R+A E  +     VGYQ+RF  H  E T I  +T+G+LL
Sbjct: 117 SVAQRIADELKTPLGEGVGYQVRFTDHVSETTHIKLMTDGILL 159



 Score = 67.4 bits (163), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 48/74 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD L++DE HER L+ DFLLG +K LL    ++KII+ SATI++E F  
Sbjct: 160  AEIQRDRFLNRYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDVERFSE 219

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 220  HFDNAPVIEVSGRT 233



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD LI+DE HER L  DFLLG +
Sbjct: 160 AEIQRDRFLNRYDTLIIDEAHERSLNIDFLLGYL 193


>gi|68467887|ref|XP_722102.1| hypothetical protein CaO19.11516 [Candida albicans SC5314]
 gi|68468204|ref|XP_721941.1| hypothetical protein CaO19.4033 [Candida albicans SC5314]
 gi|46443884|gb|EAL03163.1| hypothetical protein CaO19.4033 [Candida albicans SC5314]
 gi|46444050|gb|EAL03328.1| hypothetical protein CaO19.11516 [Candida albicans SC5314]
          Length = 996

 Score =  255 bits (651), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 159/458 (34%), Positives = 241/458 (52%), Gaps = 22/458 (4%)

Query: 300 VIKCLLHSTVEVAA--DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357
           VIK +    +E  A  D  ++ Y V++LDE HER +  D L  ++K        +K+I+ 
Sbjct: 432 VIKYMTDGMLEREALNDPNMNRYSVIMLDEAHERTIATDVLFALLKNAAKQNPNLKVIVT 491

Query: 358 SATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID 417
           SAT++   F  YFN    II +PGR +P+++ Y    E+D   +           L  + 
Sbjct: 492 SATLDSNKFSRYFNNCP-IITIPGRTFPVEVLYTKAPEMDYLAA----------ALESVI 540

Query: 418 KKYPRTERGDVLIFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVF 473
           + +     GD+L+F++G  EI +   A  E      E     I+LP++S L  E Q R+F
Sbjct: 541 QIHVSEPAGDILVFLTGQEEIETSCEALHERMKLLGENIPELIILPVYSALPSEMQTRIF 600

Query: 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAE 533
              P G RK I++TNIAETSITIDGI +VVD G VK   YD    M +L+   ISKA A 
Sbjct: 601 EPTPPGSRKVILATNIAETSITIDGIYYVVDPGFVKINMYDSKLGMDSLRVTPISKAQAN 660

Query: 534 QRKGRAGRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPF 592
           QR GRAGRTGPG CYRLY+E+ Y   +   + PEI+R ++   +L L  MG+ D+  F F
Sbjct: 661 QRSGRAGRTGPGKCYRLYTEQAYEKEMIPNTIPEIQRQNLSHTILMLKAMGIHDLVNFEF 720

Query: 593 LEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTV 652
           ++ P    + +++  L    A+D    +T+LGR ++DLP++  L K L+    +   + +
Sbjct: 721 MDPPSTTTMLTALEDLYILDALDDDGNLTTLGRKMADLPMEPALAKTLIQSVEYECTEEI 780

Query: 653 LSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW 712
           LS+ A+LSVQ+ F     +    +  +     + GD LT+LN ++ W         SK W
Sbjct: 781 LSIVAMLSVQTIFYRPKDKQALADQRKSRFHHSLGDHLTLLNVFQSWC----RNNYSKTW 836

Query: 713 CKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
           C+   I+E+      ++R Q K ++   G  T   G D
Sbjct: 837 CRDNFIQERSMRRAMEVRKQLKSIMQRFGYKTMSCGND 874



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 7/120 (5%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---- 82
           T + I+E +  LPV   + ++++ +   + V+I G+TG GK+TQI QY+ + G  +    
Sbjct: 325 TSLPIQEQRRMLPVYAMRSQLLEAIRDNQFVVIVGETGSGKTTQIVQYIYEEGMNKVGGQ 384

Query: 83  ---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
              I CTQPRR+A  S++KRV+ E   +  + VGY IRFE    E T I ++T+G+L R+
Sbjct: 385 TKLIGCTQPRRVAAESVAKRVSEEVGCKLGDTVGYTIRFEDVTSENTVIKYMTDGMLERE 444



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E+ Y   +   + PEI+R ++   +L L  MG+ D+  F F++ P   
Sbjct: 668 RTGPGKCYRLYTEQAYEKEMIPNTIPEIQRQNLSHTILMLKAMGIHDLVNFEFMDPPSTT 727

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            + +++  L    A+D    +TTLGR ++DLP++  L K L+
Sbjct: 728 TMLTALEDLYILDALDDDGNLTTLGRKMADLPMEPALAKTLI 769



 Score = 47.8 bits (112), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  ++ Y V++LDE HER +  D L  ++K        +K+I+ SAT++   F  YFN  
Sbjct: 448  DPNMNRYSVIMLDEAHERTIATDVLFALLKNAAKQNPNLKVIVTSATLDSNKFSRYFNNC 507

Query: 1179 AKDLLSGST 1187
                + G T
Sbjct: 508  PIITIPGRT 516


>gi|340726893|ref|XP_003401786.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16-like [Bombus terrestris]
          Length = 1152

 Score =  255 bits (651), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 152/425 (35%), Positives = 239/425 (56%), Gaps = 19/425 (4%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F  +F   A  
Sbjct: 569 LDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDSSKFSAFFGNAA-T 627

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
            ++PGR +P+++ +       +   E        ++L I     PR+  GDVL+FM G  
Sbjct: 628 FQIPGRTFPVEVLHA------KNPVEDYVDAAVKQVLQI--HLQPRS--GDVLVFMPGQE 677

Query: 437 EISSIVRAAQEY---NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETS 493
           +I     A +E     E +    +LP++S L  + Q ++F  +  GLRKC+V+TNIAETS
Sbjct: 678 DIEVTCEALKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRSEGGLRKCVVATNIAETS 737

Query: 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553
           +T+DGI FVVDSG  K   Y+    M  LQ + +S+A+A+QR GRAGRTGPG CYRLY+ 
Sbjct: 738 LTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRAGRAGRTGPGTCYRLYTR 797

Query: 554 EQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHG 612
            QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +NI +S+  L   G
Sbjct: 798 RQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLGFHFMDPPPQDNILNSLYQLWILG 857

Query: 613 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRD 672
           A+D   R+T LGR +++ P+D P  +ML+  S       +L + ++LSV S F     R+
Sbjct: 858 ALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSIFYRPKGRE 917

Query: 673 PDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQ 732
            D ++AR++ +    D LT LN Y +W    K    S  WC    I  +   +V ++R Q
Sbjct: 918 EDSDSAREKFQVPESDHLTYLNVYNQW----KANGYSSSWCNVHFIHAKAMRKVREVRQQ 973

Query: 733 FKQVL 737
            +++L
Sbjct: 974 LEEIL 978



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 14/136 (10%)

Query: 18  DFKQKEKFSTLMK-----------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCG 66
           DFK  +K++  ++           I+  + SLPV   +QE+++ + +  VV+I G+TG G
Sbjct: 427 DFKAGQKYARHIRDEVTGEAKYRSIQHQRRSLPVFAVRQELLNVIRENSVVVIVGETGSG 486

Query: 67  KSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRR 123
           K+TQ+ QYL + G+ R   I CTQPRR+A +S++KRV+ E  +   + VGY IRFE    
Sbjct: 487 KTTQLTQYLHEDGYSRYGIIGCTQPRRVAAMSVAKRVSDEMATALGDKVGYAIRFEDCTS 546

Query: 124 EKTKIVFITEGLLLRQ 139
           + T I ++T+G+LLR+
Sbjct: 547 KDTVIKYMTDGILLRE 562



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 73/126 (57%), Gaps = 1/126 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG CYRLY+  QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP 
Sbjct: 784 GRTGPGTCYRLYTRRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLGFHFMDPPPQ 843

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
           +NI +S+  L   GA+D   R+T LGR +++ P+D P  +ML+  S       +L++   
Sbjct: 844 DNILNSLYQLWILGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSM 903

Query: 927 LNFGAI 932
           L+  +I
Sbjct: 904 LSVPSI 909



 Score = 47.4 bits (111), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F  +F   A  
Sbjct: 569  LDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDSSKFSAFFGNAATF 628

Query: 1182 LLSGST 1187
             + G T
Sbjct: 629  QIPGRT 634


>gi|238882910|gb|EEQ46548.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22 [Candida
           albicans WO-1]
          Length = 996

 Score =  255 bits (651), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 159/458 (34%), Positives = 241/458 (52%), Gaps = 22/458 (4%)

Query: 300 VIKCLLHSTVEVAA--DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357
           VIK +    +E  A  D  ++ Y V++LDE HER +  D L  ++K        +K+I+ 
Sbjct: 432 VIKYMTDGMLEREALNDPNMNRYSVIMLDEAHERTIATDVLFALLKNAAKQNPNLKVIVT 491

Query: 358 SATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID 417
           SAT++   F  YFN    II +PGR +P+++ Y    E+D   +           L  + 
Sbjct: 492 SATLDSNKFSRYFNNCP-IITIPGRTFPVEVLYTKAPEMDYLAA----------ALESVI 540

Query: 418 KKYPRTERGDVLIFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVF 473
           + +     GD+L+F++G  EI +   A  E      E     I+LP++S L  E Q R+F
Sbjct: 541 QIHVSEPAGDILVFLTGQEEIETSCEALHERMKLLGENIPELIILPVYSALPSEMQTRIF 600

Query: 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAE 533
              P G RK I++TNIAETSITIDGI +VVD G VK   YD    M +L+   ISKA A 
Sbjct: 601 EPTPPGSRKVILATNIAETSITIDGIYYVVDPGFVKINMYDSKLGMDSLRVTPISKAQAN 660

Query: 534 QRKGRAGRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPF 592
           QR GRAGRTGPG CYRLY+E+ Y   +   + PEI+R ++   +L L  MG+ D+  F F
Sbjct: 661 QRSGRAGRTGPGKCYRLYTEQAYEKEMIPNTIPEIQRQNLSHTILMLKAMGIHDLVNFEF 720

Query: 593 LEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTV 652
           ++ P    + +++  L    A+D    +T+LGR ++DLP++  L K L+    +   + +
Sbjct: 721 MDPPSTTTMLTALEDLYILDALDDDGNLTTLGRKMADLPMEPALAKTLIQSVEYECTEEI 780

Query: 653 LSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW 712
           LS+ A+LSVQ+ F     +    +  +     + GD LT+LN ++ W         SK W
Sbjct: 781 LSIVAMLSVQTIFYRPKDKQALADQRKSRFHHSLGDHLTLLNVFQSWC----RNNYSKTW 836

Query: 713 CKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
           C+   I+E+      ++R Q K ++   G  T   G D
Sbjct: 837 CRDNFIQERSMRRAMEVRKQLKSIMQRFGYKTMSCGND 874



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 7/120 (5%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---- 82
           T + I+E +  LPV   + ++++ +   + V+I G+TG GK+TQI QY+ + G  +    
Sbjct: 325 TSLPIQEQRRMLPVYAMRSQLLEAIRDNQFVVIVGETGSGKTTQIVQYIYEEGMNKVGGQ 384

Query: 83  ---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
              I CTQPRR+A  S++KRV+ E   +  + VGY IRFE    E T I ++T+G+L R+
Sbjct: 385 TKLIGCTQPRRVAAESVAKRVSEEVGCKLGDTVGYTIRFEDVTSENTVIKYMTDGMLERE 444



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E+ Y   +   + PEI+R ++   +L L  MG+ D+  F F++ P   
Sbjct: 668 RTGPGKCYRLYTEQAYEKEMIPNTIPEIQRQNLSHTILMLKAMGIHDLVNFEFMDPPSTT 727

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            + +++  L    A+D    +TTLGR ++DLP++  L K L+
Sbjct: 728 TMLTALEDLYILDALDDDGNLTTLGRKMADLPMEPALAKTLI 769



 Score = 47.8 bits (112), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  ++ Y V++LDE HER +  D L  ++K        +K+I+ SAT++   F  YFN  
Sbjct: 448  DPNMNRYSVIMLDEAHERTIATDVLFALLKNAAKQNPNLKVIVTSATLDSNKFSRYFNNC 507

Query: 1179 AKDLLSGST 1187
                + G T
Sbjct: 508  PIITIPGRT 516


>gi|238063768|ref|ZP_04608477.1| ATP-dependent helicase hrpA [Micromonospora sp. ATCC 39149]
 gi|237885579|gb|EEP74407.1| ATP-dependent helicase hrpA [Micromonospora sp. ATCC 39149]
          Length = 1333

 Score =  255 bits (651), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 168/496 (33%), Positives = 260/496 (52%), Gaps = 36/496 (7%)

Query: 278 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337
            Y V   D++ +R L      G++        E+  D  L  YD L++DE HER L+ DF
Sbjct: 162 GYKVRFTDQVSDRSLVKLMTDGIL------LAELQTDRMLRQYDTLIIDEAHERSLNIDF 215

Query: 338 LLGVIKCLLHSTAEVKIILMSATINIELFHTYF----NRIAKIIKVPGRLYPIQLEYHPI 393
           +LG ++ LL    ++K+++ SATI  + F  +F     R A +++V GR YP+++ Y P+
Sbjct: 216 ILGYLRQLLPRRPDLKVVITSATIETDRFAKHFADAEGRPAPVVEVSGRTYPVEVRYRPL 275

Query: 394 VELDRTKSEKLDPGPYIR--ILSIID--KKYPRTERGDVLIFMSGISEISSIVRAAQEYN 449
           VE+     E  D    +R  I +I D  ++      GD+L+F+SG  EI     A  +  
Sbjct: 276 VEVTDADDENGD-DENVRDQIQAIGDAVEELAAEGPGDILVFLSGEREIRDTADALGKLV 334

Query: 450 EKSQ---GWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSG 506
              +   G  +LPL++ LS  EQ RVF  AP   R+ +++TN+AETS+T+ GI++VVD G
Sbjct: 335 GSRRSLLGTEILPLYARLSAAEQHRVF--APHTARRVVLATNVAETSLTVPGIKYVVDPG 392

Query: 507 KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPE 566
             +   Y    K+  L    +S+ASA QRKGR GRT  G+C RLY E+ ++   E++ PE
Sbjct: 393 TARISRYSSRLKVQRLPIEPVSQASANQRKGRCGRTSDGICVRLYDEQDFAARPEFTDPE 452

Query: 567 IRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKE-----RVT 621
           I R ++ S++L +  +GLGDV  FPF++ P   NI   V  L + GA+D  E     R+T
Sbjct: 453 ILRTNLASVILQMTSIGLGDVAAFPFIDPPDRRNIADGVNLLHELGALDPTETDPAKRLT 512

Query: 622 SLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKE 681
            LGR L+ LPVD  L +M++ G        V+ +AA LS+Q P    A +    + A   
Sbjct: 513 PLGRRLAQLPVDPRLARMVLEGERNGCATEVIVIAAALSIQDPRERPAEKQAQADQAHAR 572

Query: 682 LESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIEEQRFYEVTKLRSQFKQVL- 737
                 D +  LN ++ +L  ++  + S   ++ C+   +   R  E   + SQ +QVL 
Sbjct: 573 FADKESDFVAYLNLWR-YLREQQRELSSSAFRRMCRAEYLNYLRVREWQDIVSQVRQVLR 631

Query: 738 ------GDSGLITDIP 747
                 G  G   D+P
Sbjct: 632 TAEKGDGRRGAGADLP 647



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLY E+ ++   E++ PEI R ++ S++L +  +GLGDV  FPF++ P   
Sbjct: 426 GRTSDGICVRLYDEQDFAARPEFTDPEILRTNLASVILQMTSIGLGDVAAFPFIDPPDRR 485

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI   V  L + GA+D  E     R+T LGR L+ LPVD  L +M++ G        +++
Sbjct: 486 NIADGVNLLHELGALDPTETDPAKRLTPLGRRLAQLPVDPRLARMVLEGERNGCATEVIV 545

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 546 IAAALSIQ--DPRER 558



 Score = 77.0 bits (188), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
            LPV++ + ++  T+   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 83  GLPVSERRDDLAATIRDHQVVIVAGETGSGKTTQLPKICLELGRGVHGLIGHTQPRRLAA 142

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++  ++VGY++RF     +++ +  +T+G+LL
Sbjct: 143 RTVADRIAEELGTELGDVVGYKVRFTDQVSDRSLVKLMTDGILL 186



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+++ SATI  + F  
Sbjct: 187  AELQTDRMLRQYDTLIIDEAHERSLNIDFILGYLRQLLPRRPDLKVVITSATIETDRFAK 246

Query: 1174 YF 1175
            +F
Sbjct: 247  HF 248


>gi|350421485|ref|XP_003492857.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16-like [Bombus impatiens]
          Length = 1152

 Score =  255 bits (651), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 152/425 (35%), Positives = 239/425 (56%), Gaps = 19/425 (4%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F  +F   A  
Sbjct: 569 LDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDSSKFSAFFGNAA-T 627

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
            ++PGR +P+++ +       +   E        ++L I     PR+  GDVL+FM G  
Sbjct: 628 FQIPGRTFPVEVLHA------KNPVEDYVDAAVKQVLQI--HLQPRS--GDVLVFMPGQE 677

Query: 437 EISSIVRAAQEY---NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETS 493
           +I     A +E     E +    +LP++S L  + Q ++F  +  GLRKC+V+TNIAETS
Sbjct: 678 DIEVTCEALKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRSEGGLRKCVVATNIAETS 737

Query: 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553
           +T+DGI FVVDSG  K   Y+    M  LQ + +S+A+A+QR GRAGRTGPG CYRLY+ 
Sbjct: 738 LTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRAGRAGRTGPGTCYRLYTR 797

Query: 554 EQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHG 612
            QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +NI +S+  L   G
Sbjct: 798 RQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLGFHFMDPPPQDNILNSLYQLWILG 857

Query: 613 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRD 672
           A+D   R+T LGR +++ P+D P  +ML+  S       +L + ++LSV S F     R+
Sbjct: 858 ALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSIFYRPKGRE 917

Query: 673 PDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQ 732
            D ++AR++ +    D LT LN Y +W    K    S  WC    I  +   +V ++R Q
Sbjct: 918 EDSDSAREKFQVPESDHLTYLNVYNQW----KANGYSSSWCNVHFIHAKAMRKVREVRQQ 973

Query: 733 FKQVL 737
            +++L
Sbjct: 974 LEEIL 978



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 14/136 (10%)

Query: 18  DFKQKEKFSTLMK-----------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCG 66
           DFK  +K++  ++           I+  + SLPV   +QE+++ + +  VV+I G+TG G
Sbjct: 427 DFKAGQKYARHIRDEVTGEAKYRSIQHQRRSLPVFAVRQELLNVIRENSVVVIVGETGSG 486

Query: 67  KSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRR 123
           K+TQ+ QYL + G+     I CTQPRR+A +S++KRV+ E  +   + VGY IRFE    
Sbjct: 487 KTTQLTQYLHEDGYSCYGIIGCTQPRRVAAMSVAKRVSDEMATALGDKVGYAIRFEDCTS 546

Query: 124 EKTKIVFITEGLLLRQ 139
           + T I ++T+G+LLR+
Sbjct: 547 KDTVIKYMTDGILLRE 562



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 73/126 (57%), Gaps = 1/126 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG CYRLY+  QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP 
Sbjct: 784 GRTGPGTCYRLYTRRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLGFHFMDPPPQ 843

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
           +NI +S+  L   GA+D   R+T LGR +++ P+D P  +ML+  S       +L++   
Sbjct: 844 DNILNSLYQLWILGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSM 903

Query: 927 LNFGAI 932
           L+  +I
Sbjct: 904 LSVPSI 909



 Score = 47.4 bits (111), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F  +F   A  
Sbjct: 569  LDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDSSKFSAFFGNAATF 628

Query: 1182 LLSGST 1187
             + G T
Sbjct: 629  QIPGRT 634


>gi|294890470|ref|XP_002773177.1| ATP-dependent RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239878186|gb|EER04993.1| ATP-dependent RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 636

 Score =  255 bits (651), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 157/449 (34%), Positives = 252/449 (56%), Gaps = 26/449 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   DN LS Y+V++LDE HER L  D L G++K +L +  ++K+++MSAT+  E F  Y
Sbjct: 73  EAQLDNKLSRYNVIMLDEAHERTLATDVLFGLLKEILPNRPDLKVVVMSATLEAEAFGKY 132

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A ++KVPGR YP+++ Y P  + D  +S        ++ +  I  + P    GD+L
Sbjct: 133 FYN-APLLKVPGRTYPVEIFYSPESQKDYFESA-------VQTVVYIHTEEP-AGSGDIL 183

Query: 430 IFMSGISEISSI---VRAAQEYNEKSQG-WIVLPLHSTLSLEEQDRVFHYAP----EGL- 480
           +F++G  EI +    +R A     +  G  +V+PL+S+L   +Q ++F  AP    EG  
Sbjct: 184 LFLTGEEEIENACKQLRTASMRTMREHGELLVVPLYSSLPPRQQQKIFEDAPPPRYEGGP 243

Query: 481 --RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
             RK +V+TN+AETSITIDGI +VVD G  K+  ++   +M +L    IS+ASA+QR GR
Sbjct: 244 AGRKVVVATNVAETSITIDGIVYVVDPGFSKQKVFNPRTRMESLLVSPISQASAQQRAGR 303

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
           AGRT PG C+RLY+E  Y  L   + PEI R ++ S++L+L  +G+ D+  F F++ P  
Sbjct: 304 AGRTRPGKCFRLYTENAYGDLQPSTFPEILRSNLSSVVLTLKKLGIDDLVHFDFMDPPAP 363

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
           E +  ++ +L   GA+D +  +T  GR ++D PV+  +  +L+    FH  +  L++ A+
Sbjct: 364 ETMMRALETLVYLGALDEEGDLTEFGRTMADFPVEPQMAAVLLRSGRFHCTEEALTIIAM 423

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKK-----DRVRSKKWC 713
           LSV   F        + + A+++     GD LT++ AY  ++  K      +R  S +WC
Sbjct: 424 LSVPQCFLRPKEAQQEADAAKQKFVHMDGDHLTLMQAYDAYIAYKMQCNGVERAMS-QWC 482

Query: 714 KRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
               I  +       +R+Q K++    GL
Sbjct: 483 WDNYINYRTMKSAENVRAQLKRLTDRVGL 511



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 66/116 (56%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT PG C+RLY+E  Y  L   + PEI R ++ S++L+L  +G+ D+  F F++ P  E
Sbjct: 305 GRTRPGKCFRLYTENAYGDLQPSTFPEILRSNLSSVVLTLKKLGIDDLVHFDFMDPPAPE 364

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            +  ++ +L   GA+D +  +T  GR ++D PV+  +  +L+    FH  +  L +
Sbjct: 365 TMMRALETLVYLGALDEEGDLTEFGRTMADFPVEPQMAAVLLRSGRFHCTEEALTI 420



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 4/73 (5%)

Query: 71  IPQYLVQAGF----QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKT 126
           +PQ+L++AG+    + IACTQPRR+A +S+++RVA E        VG+ IRFE      T
Sbjct: 1   MPQFLLEAGYASDGKMIACTQPRRVAAMSVAQRVAQEMDVTLGEQVGFTIRFEDQTGPNT 60

Query: 127 KIVFITEGLLLRQ 139
            + ++T+G+LLR+
Sbjct: 61  MLKYMTDGMLLRE 73



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            DN LS Y+V++LDE HER L  D L G++K +L +  ++K+++MSAT+  E F  YF
Sbjct: 77   DNKLSRYNVIMLDEAHERTLATDVLFGLLKEILPNRPDLKVVVMSATLEAEAFGKYF 133


>gi|357605208|gb|EHJ64511.1| putative pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
           [Danaus plexippus]
          Length = 888

 Score =  255 bits (651), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 246/445 (55%), Gaps = 29/445 (6%)

Query: 300 VIKCLLHSTV--EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357
           VIK +   T+  E  ++  L+SY V+++DE HER LH D L G++K +     ++K+++ 
Sbjct: 339 VIKYMTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDITRFRPDLKLLIS 398

Query: 358 SATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID 417
           SAT++ E F T+F+  A I ++PGR +P+ + Y    E D   +        + +L I  
Sbjct: 399 SATLDAEKFSTFFDD-APIFRIPGRRFPVHIYYTKAPEADYIDA------CVVTVLQI-- 449

Query: 418 KKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKS----QGWIVLPLHSTLSLEEQDRVF 473
             +     GD+L+F++G  EI + V   QE  +K     +  I+LP+++ L  + Q ++F
Sbjct: 450 --HATQPLGDILVFLTGQEEIETCVEMLQERTKKIGKKLKELIILPVYANLPTDMQAKIF 507

Query: 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAE 533
              PEG RK +++TNIAETS+TID I +V+D G  K+ +++    M +L    ISKASA 
Sbjct: 508 EPTPEGARKVVLATNIAETSLTIDNIIYVIDPGFAKQNNFNSKTGMESLMVVPISKASAN 567

Query: 534 QRKGRAGRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPF 592
           QR GRAGR   G C+RLY+   Y   L + + PEI+R+++ + +L+L  +G+ D+  F F
Sbjct: 568 QRAGRAGRVAAGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLTLKALGINDLIHFDF 627

Query: 593 LEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTV 652
           L+ PP E +  ++  L   GA++    +T  GR +++ P D  L KML+    +   + +
Sbjct: 628 LDPPPHETLVLALEQLYALGALNHHGELTKAGRRMAEFPTDPMLAKMLLASEKYKCSEEI 687

Query: 653 LSLAAVLSVQSPFTNRAFRDPD----CETARKELESNHGDPLTVLNAYKEWLGVKKDRVR 708
           +S+AA+LSV S      +R  D     +TARK     HGD LT++N Y +W     D   
Sbjct: 688 VSIAAMLSVNSSVF---YRPKDKIIHADTARKNFFHRHGDHLTIMNVYNQWA----DSDY 740

Query: 709 SKKWCKRRGIEEQRFYEVTKLRSQF 733
           S +WC    I+ +       +R Q 
Sbjct: 741 SVQWCYENFIQYRSMKRARDVREQL 765



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 20/153 (13%)

Query: 7   EEWKLLLRTYLDF------------KQKEKFSTLMKIR----ETQNSLPVAQYKQEIIDT 50
           +E++LLL   +DF            K +EK S   K R    ET+ SLPV  ++  +I+ 
Sbjct: 199 DEYELLLDEQIDFIQALQLEGNQEKKDEEKISEYKKARLTIEETKKSLPVFPFRDSLIEA 258

Query: 51  VLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACTQPRRIACISLSKRVAYETLS 106
           +   +++I+ G+TG GK+TQIPQYL +AGF    ++I CTQPRR+A +S++ RVA E   
Sbjct: 259 IKNYQILIVEGETGSGKTTQIPQYLHEAGFTDDGKKIGCTQPRRVAAMSVAARVAQEMNV 318

Query: 107 QYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           +  N VGY IRFE    ++T I ++T+G L R+
Sbjct: 319 KLGNEVGYSIRFEDCTSDRTVIKYMTDGTLHRE 351



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 1/107 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           R   G C+RLY+   Y   L + + PEI+R+++ + +L+L  +G+ D+  F FL+ PP E
Sbjct: 575 RVAAGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLTLKALGINDLIHFDFLDPPPHE 634

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMF 914
            +  ++  L   GA++    +T  GR +++ P D  L KML+    +
Sbjct: 635 TLVLALEQLYALGALNHHGELTKAGRRMAEFPTDPMLAKMLLASEKY 681



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 39/55 (70%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            L+SY V+++DE HER LH D L G++K +     ++K+++ SAT++ E F T+F+
Sbjct: 358  LASYSVMIIDEAHERTLHTDILFGLVKDITRFRPDLKLLISSATLDAEKFSTFFD 412


>gi|440298798|gb|ELP91429.1| ATP-dependent RNA helicase DHX8, putative [Entamoeba invadens IP1]
          Length = 947

 Score =  255 bits (651), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 147/434 (33%), Positives = 243/434 (55%), Gaps = 22/434 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  +  Y V++LDE HER +  D L G++K         K+I+ SAT+  E F  Y
Sbjct: 383 EYLTDPDMKQYSVIILDEAHERTVGTDILFGLLKQTCLRRKNFKLIVTSATLEAEKFSEY 442

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRI-LSIIDKKYPRTERGDV 428
           F + A I+++PGR YP+ +EY    E+D           Y+   + II + +   + GD+
Sbjct: 443 FLK-APIVRIPGRTYPVTIEYLREPEMD-----------YVYAGIEIILQIHMNEDPGDI 490

Query: 429 LIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           L F++G  EI ++  A    ++ +++       LP+++ L  ++Q ++F  A +  RKC+
Sbjct: 491 LFFLTGQEEIDNVCNAINAKSKTFSKNCPKLKALPIYAALPTDQQKQIFEPAEKFCRKCV 550

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           V+TNIAETSITIDGI++VVDSG VK+  Y+    M  L    IS+A A QR GRAGRTGP
Sbjct: 551 VATNIAETSITIDGIKYVVDSGFVKQNVYNPKLGMDQLLITPISQACASQRSGRAGRTGP 610

Query: 545 GVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           G C+RLY+E  +   + + + PEI+R ++++ +L L  MG+ +V+KF F++ P    + S
Sbjct: 611 GKCFRLYTEAAFDHEMTQMTVPEIQRANLETTVLLLKAMGIQNVQKFDFMDPPVETALYS 670

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
           ++  L   GA+D    +T +G  +S+ P++ PL KML+    F   +   ++ A LSV +
Sbjct: 671 AMHHLFSIGALDDNGELTRVGTKMSEFPLEPPLAKMLISSEEFKCSEEAATVVAALSVGN 730

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
            F     +  + E  +K+ E+  GD +T+L+ Y +W+   K    +  WCK   I  +  
Sbjct: 731 FFYRPKEKAEEAERRKKDFENVAGDQITLLHVYNQWIKNGK----TGSWCKSHYINLRSL 786

Query: 724 YEVTKLRSQFKQVL 737
               ++R+Q  +++
Sbjct: 787 LRCEEVRNQIVKIM 800



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 77/112 (68%), Gaps = 3/112 (2%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQ 87
           I+E +  LP+   + E+++ +   +++II G+TGCGK+TQI QYL + G+    RI CTQ
Sbjct: 272 IQEKRKELPIFSMRGELMEKIKNNQILIIIGETGCGKTTQITQYLDEEGYSKGGRIGCTQ 331

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           PRR+A IS+S+RV+ E   + S  VGY IRF+     KT+I ++T+G+LLR+
Sbjct: 332 PRRVATISVSQRVSEEMGCKVSEEVGYYIRFDDRTSRKTRIKYMTDGMLLRE 383



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 72/124 (58%), Gaps = 1/124 (0%)

Query: 808 SRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG C+RLY+E  +   + + + PEI+R ++++ +L L  MG+ +V+KF F++ P  
Sbjct: 606 GRTGPGKCFRLYTEAAFDHEMTQMTVPEIQRANLETTVLLLKAMGIQNVQKFDFMDPPVE 665

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
             + S++  L   GA+D    +T +G  +S+ P++ PL KML+    F   +    +  A
Sbjct: 666 TALYSAMHHLFSIGALDDNGELTRVGTKMSEFPLEPPLAKMLISSEEFKCSEEAATVVAA 725

Query: 927 LNFG 930
           L+ G
Sbjct: 726 LSVG 729



 Score = 45.1 bits (105), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
             D  +  Y V++LDE HER +  D L G++K         K+I+ SAT+  E F  YF
Sbjct: 386  TDPDMKQYSVIILDEAHERTVGTDILFGLLKQTCLRRKNFKLIVTSATLEAEKFSEYF 443


>gi|390598186|gb|EIN07584.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Punctularia strigosozonata HHB-11173 SS5]
          Length = 654

 Score =  255 bits (651), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 157/445 (35%), Positives = 242/445 (54%), Gaps = 36/445 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  LS Y V+++DE HER ++ D LLG++K +      +++I+ SAT++   F  Y
Sbjct: 152 ETLVDPLLSKYSVIMIDEAHERSIYTDLLLGILKKIRRKRPGLRLIVSSATLDASSFLDY 211

Query: 370 F-------NRIAKIIKVPGRLYPIQLEY--HPIVELDRTKSEKLDPGPYIRILSIIDKKY 420
           F       ++ A II + GR+YP+++ Y   P  +  R  +E            I  ++ 
Sbjct: 212 FTANTVNKDKEATIISLEGRMYPVEVAYLQEPTPDYVRKAAEV--------AWEINLQQS 263

Query: 421 PRTERGDVLIFMSGISEISSIVRAAQEYNE-------KSQGWIVLPLHSTLSLEEQDRVF 473
           P    GDVLIF++G  EI    R  +E++E        +   + L LH+ L+ EEQ RVF
Sbjct: 264 P----GDVLIFLTGREEIE---RCLEEFSEMLPTLPRHAPKLVPLALHAGLTTEEQLRVF 316

Query: 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAE 533
                G RK IVSTNIAE S+TIDGI+FV+DSG VK  +Y+ T  +STL     S ASA 
Sbjct: 317 EPTERGTRKVIVSTNIAEASVTIDGIKFVIDSGFVKIRTYNPTTSLSTLATVPTSVASAT 376

Query: 534 QRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFL 593
           QR GRAGRT  GVCYRLY++  +  L   + PEI R  + + +L L  +G+ D+ KF ++
Sbjct: 377 QRAGRAGRTSAGVCYRLYTQSAFEALPRTTPPEITRTDLTTPILQLKSLGIDDLMKFEWV 436

Query: 594 EAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
            APP+E++  ++  L   G I    R+T +G  +++ PV++ + +ML     F   + +L
Sbjct: 437 TAPPSESVLRALEGLVNSGMIGEDGRLTPVGAKVAECPVEVGIARMLFNSKEFQCGEEIL 496

Query: 654 SLAAVLSVQSPFTNR-AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW 712
           ++AA+ +VQ  F  R   +    E  R++  +  GD LT+LNAY  ++   K    +  W
Sbjct: 497 TIAAMTAVQDVFVIRDGAQGALDELERRKFTAEEGDHLTLLNAYNAFIRYGK----ASSW 552

Query: 713 CKRRGIEEQRFYEVTKLRSQFKQVL 737
           CK   +  +       +RSQ K+ +
Sbjct: 553 CKSHALSFRAMSRAVSIRSQLKKYM 577



 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 78/124 (62%), Gaps = 5/124 (4%)

Query: 21  QKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF 80
           Q    S    I+  +  LP+ +++++++  V    V I+ G TGCGK+TQ+PQYL +AG+
Sbjct: 29  QSAPLSGAYSIQAQRERLPIFKHREKLLYCVETFGVTIVVGQTGCGKTTQLPQYLYEAGW 88

Query: 81  QR----IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK-HRREKTKIVFITEGL 135
                 IACTQPRR+A  S++ RVA E  S   + VGY IRFE    +E+T+I ++T+G+
Sbjct: 89  AADGNVIACTQPRRVAATSVASRVASEVGSMLGDEVGYTIRFEDVSSKERTRIKYMTDGM 148

Query: 136 LLRQ 139
           L R+
Sbjct: 149 LFRE 152



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 65/115 (56%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT  GVCYRLY++  +  L   + PEI R  + + +L L  +G+ D+ KF ++ APP+E+
Sbjct: 384 RTSAGVCYRLYTQSAFEALPRTTPPEITRTDLTTPILQLKSLGIDDLMKFEWVTAPPSES 443

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           +  ++  L   G I    R+T +G  +++ PV++ + +ML     F   + +L +
Sbjct: 444 VLRALEGLVNSGMIGEDGRLTPVGAKVAECPVEVGIARMLFNSKEFQCGEEILTI 498



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  LS Y V+++DE HER ++ D LLG++K +      +++I+ SAT++   F  YF   
Sbjct: 156  DPLLSKYSVIMIDEAHERSIYTDLLLGILKKIRRKRPGLRLIVSSATLDASSFLDYF--- 212

Query: 1179 AKDLLSGSTARSHKDVTILKVILASGLYP 1207
                 + +T    K+ TI+   L   +YP
Sbjct: 213  -----TANTVNKDKEATIIS--LEGRMYP 234


>gi|806328|dbj|BAA07685.1| DEAH family RNA helicase [Escherichia coli]
          Length = 1277

 Score =  255 bits (651), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 245/443 (55%), Gaps = 22/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HE  L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHEHSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   +   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     +LPL++ LS  EQ+RVF       R+ +++T
Sbjct: 274 ILIFMSG-EEIPDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 328

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 329 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 388

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 389 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 448

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T LGR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 449 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 508

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 509 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 567

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 568 YLRVREWQDIYTQLRQVVKELGI 590



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 381 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 440

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 441 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 500

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 501 ITSALSIQ--DPRER 513



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ+I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELKTEPGVCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HE  L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHEHSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|443899949|dbj|GAC77277.1| mRNA splicing factor ATP-dependent RNA helicase [Pseudozyma
           antarctica T-34]
          Length = 1055

 Score =  255 bits (651), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 247/456 (54%), Gaps = 27/456 (5%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           LSSY  L++DE HER L  D L G++K +     ++K+++ SAT++ E F  +F+  A I
Sbjct: 517 LSSYSALIIDEAHERTLSTDVLFGLVKDIARFRPDLKLLISSATLDAEKFSEFFDD-API 575

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
             VPGR YP+ + Y P  E +   +           ++ + + +    RGD+L+F++G  
Sbjct: 576 FNVPGRRYPVDIHYTPQPEANYLHA----------AITTVFQIHTTQPRGDILVFLTGQD 625

Query: 437 EISSIVRAAQEYN----EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
           EI + +   QE +     K    IV P+++ L  E Q ++F   PEG RK +++TNIAET
Sbjct: 626 EIDAAMENLQETSRALGNKIAELIVCPIYANLPSEMQAKIFEPTPEGARKVVLATNIAET 685

Query: 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
           SITIDG+ FV+D G VK+ SY+    MS+L     S+ASA QR GRAGR GPG C+RL++
Sbjct: 686 SITIDGVVFVIDPGFVKQNSYNPRTGMSSLTVVACSRASANQRAGRAGRVGPGKCFRLFT 745

Query: 553 EEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQH 611
           +  + + + E +TPEI+R ++ +++L L  +G+ D+  F FL+ PP + +  S   L   
Sbjct: 746 KWAFKNEMDENTTPEIQRTNLANVVLLLKSLGINDLLNFDFLDPPPTDTLMRSFELLYAL 805

Query: 612 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFR 671
           GA++ K  +T LGR +++ PVD  L K ++    +   + VLS+ ++LS  S      FR
Sbjct: 806 GALNDKGELTKLGRRMAEFPVDPQLSKAILASEQYKCTEEVLSIVSMLSESSALF---FR 862

Query: 672 DPD----CETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVT 727
             D     + AR       GD  T+LN +++W+    D      +C    ++ +    V 
Sbjct: 863 PKDKKMHADRARAAFVRTGGDHFTLLNVWEQWVQSNYDHA----FCIDNFVQPKVLARVR 918

Query: 728 KLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHG 763
            +R Q  Q+     L  +     A +S  +RA+  G
Sbjct: 919 DVRDQLAQLCERVELQPEANADPADISGIQRAILAG 954



 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 79/114 (69%), Gaps = 4/114 (3%)

Query: 30  KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIAC 85
           KI+ T+ SLPV   +QE++D + + +V+I+ G+TG GK+TQ+PQ+L +AG+    +++ C
Sbjct: 397 KIQATRESLPVYALRQELLDAIAEYQVLIVVGETGSGKTTQLPQFLHEAGYTKDGKKVGC 456

Query: 86  TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           TQPRR+A +S++ RVA E   +     GY IRFE    + T I ++T+G+LLR+
Sbjct: 457 TQPRRVAAMSVAARVAEEMGVRLGRECGYSIRFEDCTSDDTVIKYMTDGMLLRE 510



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           R GPG C+RL+++  + + + E +TPEI+R ++ +++L L  +G+ D+  F FL+ PP +
Sbjct: 734 RVGPGKCFRLFTKWAFKNEMDENTTPEIQRTNLANVVLLLKSLGINDLLNFDFLDPPPTD 793

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFH------QIDTML 921
            +  S   L   GA++ K  +T LGR +++ PVD  L K ++    +        I +ML
Sbjct: 794 TLMRSFELLYALGALNDKGELTKLGRRMAEFPVDPQLSKAILASEQYKCTEEVLSIVSML 853

Query: 922 LLDLALNFGAIDSK 935
               AL F   D K
Sbjct: 854 SESSALFFRPKDKK 867



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 36/55 (65%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            LSSY  L++DE HER L  D L G++K +     ++K+++ SAT++ E F  +F+
Sbjct: 517  LSSYSALIIDEAHERTLSTDVLFGLVKDIARFRPDLKLLISSATLDAEKFSEFFD 571


>gi|226293915|gb|EEH49335.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
            [Paracoccidioides brasiliensis Pb18]
          Length = 1224

 Score =  255 bits (651), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/434 (35%), Positives = 238/434 (54%), Gaps = 22/434 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E+  D  L  Y V++LDE HER +  D L G++K  L    ++K+I+ SAT++ + F  Y
Sbjct: 664  EILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTLKRRHDLKVIVTSATLDADRFSEY 723

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            FN +  I  +PGR YP+++ Y    E     S+ LD    + ++ I    +     GD+L
Sbjct: 724  FN-MCPIFSIPGRTYPVEIMYSREPE-----SDYLDAA-LVTVMQI----HLTEPAGDIL 772

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   K+ G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 773  LFLTGQEEIDTACEILYE-RMKALGPSVPELIILPVYSALPSEMQSRIFDPAPPGSRKVV 831

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETSITID I +VVD G VK+ +YD    M +L    IS+A A+QR GRAGRTGP
Sbjct: 832  IATNIAETSITIDQIYYVVDPGFVKQNAYDPKLGMDSLVVTPISQAQAKQRSGRAGRTGP 891

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP   + +
Sbjct: 892  GKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLT 951

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L    A+D +  +T LGR ++D P++  L K+L+        D +LS+ A+LSVQS
Sbjct: 952  ALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVDMGCSDEMLSIVAMLSVQS 1011

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +    HGD LT+LN Y  W    K+   S  WC    I+ ++ 
Sbjct: 1012 VFYRPKEKQQQADQKKAKFHDPHGDHLTLLNVYNAW----KNSRFSNPWCFENFIQARQM 1067

Query: 724  YEVTKLRSQFKQVL 737
                 +R Q   ++
Sbjct: 1068 RRAQDVREQLVTIM 1081



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 87/135 (64%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EWK + ++     Q     T M +++ + SLPV ++++++++ V + +++I+ GDTG GK
Sbjct: 533 EWKRVTQSK---DQSFGKRTNMTMKQQRESLPVFKFRKQLLEAVRENQLLIVVGDTGSGK 589

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQ+ QYL + GF     I CTQPRR+A +S++KRV+ E   +    VGY IRFE     
Sbjct: 590 TTQLTQYLAEGGFANDGIIGCTQPRRVAAVSVAKRVSEEVGCRLGAEVGYTIRFEDCTSP 649

Query: 125 KTKIVFITEGLLLRQ 139
           +TKI ++T+G+L R+
Sbjct: 650 ETKIKYMTDGILQRE 664



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 1/114 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP  
Sbjct: 888  RTGPGKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTN 947

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
             + +++  L    A+D +  +T LGR ++D P++  L K+L+        D ML
Sbjct: 948  TMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVDMGCSDEML 1001



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q ++  D  L  Y V++LDE HER +  D L G++K  L    ++K+I+ SAT++ + F 
Sbjct: 662  QREILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTLKRRHDLKVIVTSATLDADRFS 721

Query: 1173 TYFN 1176
             YFN
Sbjct: 722  EYFN 725


>gi|258568652|ref|XP_002585070.1| hypothetical protein UREG_05759 [Uncinocarpus reesii 1704]
 gi|237906516|gb|EEP80917.1| hypothetical protein UREG_05759 [Uncinocarpus reesii 1704]
          Length = 669

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/453 (34%), Positives = 248/453 (54%), Gaps = 33/453 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  LS Y V+++DE HER L  D LLGV+K ++    E++II+ SAT+  + F  +
Sbjct: 127 EALVDPLLSRYSVIMVDEAHERSLSTDILLGVLKKVMKKRPELRIIVSSATLQAKEFLQF 186

Query: 370 F--------------NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI 415
           F               ++ +I+ + GR+YP+   +     L+    + ++     R +  
Sbjct: 187 FAGDQVDSGNSSDMGGKVGRIVSLEGRMYPVDSLF-----LENPTEDYVE-----RAVKT 236

Query: 416 IDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK----SQGWIVLPLHSTLSLEEQDR 471
           +   +     GD+L+F++G  EI   ++   EY       SQG   LPL++ L+ E+Q  
Sbjct: 237 VFDIHAEETSGDILLFLTGREEIDLAIQKISEYAATLPPHSQGLQPLPLYAGLTTEQQLY 296

Query: 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKAS 531
           VF  APE  RK IVSTNIAE S+TI+GI +V+D G  K  +YD    + TL    ISKAS
Sbjct: 297 VFEPAPENTRKVIVSTNIAEASVTIEGIVYVIDCGYAKLRAYDPNTGIDTLTAVPISKAS 356

Query: 532 AEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFP 591
           A QR GRAGRT PG C+RLY+E+ Y  L E S PEI+R ++  ++L L  +G+ ++ +F 
Sbjct: 357 ATQRAGRAGRTKPGKCFRLYTEQSYESLPETSVPEIQRSNLAPVILQLKALGIDNIVRFD 416

Query: 592 FLEAPPAENIESSVRSLTQHGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQID 650
           F  APPAE +  ++  L   GA+D   ++T  LG  +++L V+  + K+L+  S F  + 
Sbjct: 417 FFSAPPAELVIRALELLYSLGALDDYAKLTKPLGMRMAELSVEPMMSKVLLNASSFGCLS 476

Query: 651 TVLSLAAVLSVQ-SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS 709
            +LS+AA+ S+Q S +  +       E+AR++  +  GD LT LN Y+ ++   K   + 
Sbjct: 477 EMLSIAAMTSLQGSVWYQQDDEKKALESARRKFAAEEGDHLTYLNVYQAFVTKGK---KD 533

Query: 710 KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
            +WC+   +  +   +    R+Q K+ L   G+
Sbjct: 534 SRWCRENSLNYKSMLKAVSNRAQLKRYLERFGI 566



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 1/114 (0%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT PG C+RLY+E+ Y  L E S PEI+R ++  ++L L  +G+ ++ +F F  APPAE 
Sbjct: 366 RTKPGKCFRLYTEQSYESLPETSVPEIQRSNLAPVILQLKALGIDNIVRFDFFSAPPAEL 425

Query: 869 IESSVRSLTQHGAIDSKERVTT-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           +  ++  L   GA+D   ++T  LG  +++L V+  + K+L+  S F  +  ML
Sbjct: 426 VIRALELLYSLGALDDYAKLTKPLGMRMAELSVEPMMSKVLLNASSFGCLSEML 479



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 69/106 (65%), Gaps = 4/106 (3%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACTQPRRIAC 93
           LP+A++++ ++  V    V I+ G TG GKSTQ+PQ+L QAG+    ++IA TQPRR+A 
Sbjct: 22  LPIARHRKSLLYVVENYPVTIVVGQTGSGKSTQLPQFLDQAGWCADGKQIAVTQPRRVAA 81

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            +++ RVA E        VGY IRFE      T++ F+T+GLLLR+
Sbjct: 82  TTVAARVAEEMRCNVGQEVGYSIRFEDVTSAATRVKFLTDGLLLRE 127



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  LS Y V+++DE HER L  D LLGV+K ++    E++II+ SAT+  + F  +F
Sbjct: 131  DPLLSRYSVIMVDEAHERSLSTDILLGVLKKVMKKRPELRIIVSSATLQAKEFLQFF 187


>gi|225558449|gb|EEH06733.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus G186AR]
          Length = 1266

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/434 (35%), Positives = 238/434 (54%), Gaps = 22/434 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E+  D  L  Y V++LDE HER +  D L G++K  +    ++KII+ SAT++ + F  Y
Sbjct: 706  EILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTIQRRPDLKIIVTSATLDADKFSEY 765

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            FN +  I  +PGR YP+++ Y    E     S+ LD    + ++ I    +     GD+L
Sbjct: 766  FN-MCPIFSIPGRTYPVEIMYSREPE-----SDYLDAA-LVTVMQI----HLTEPAGDIL 814

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   K+ G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 815  LFLTGQEEIDTACEILYE-RMKALGPSVPELIILPVYSALPSEMQSRIFEPAPPGSRKVV 873

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETSITID I +VVD G VK+ +YD    M +L    IS+A A+QR GRAGRTGP
Sbjct: 874  IATNIAETSITIDQIYYVVDPGFVKQNAYDPKLGMDSLVVTPISQAQAKQRSGRAGRTGP 933

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP   + +
Sbjct: 934  GKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLT 993

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L    A+D +  +T LGR ++D P++  L K+L+        D +LS+ A+LSV S
Sbjct: 994  ALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVEMGCSDEMLSIVAMLSVHS 1053

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +    HGD LT+LN Y  W    K+   S  WC    I+ ++ 
Sbjct: 1054 IFYRPKEKQQQADQKKAKFHDPHGDHLTLLNVYNGW----KNSRFSSPWCFENFIQARQM 1109

Query: 724  YEVTKLRSQFKQVL 737
              V  +R Q   ++
Sbjct: 1110 RRVQDVREQLVTIM 1123



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 87/135 (64%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EWK + ++     Q     T M +++ + SLPV ++++++++ V + +++I+ GDTG GK
Sbjct: 575 EWKRVTQSK---DQSYGKRTNMTMKQQRESLPVFKFRKQLLEAVTENQLLIVVGDTGSGK 631

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQ+ QYL + GF     I CTQPRR+A +S++KRV+ E   +    VGY IRFE     
Sbjct: 632 TTQLTQYLAEGGFANNGIIGCTQPRRVAAVSVAKRVSEEVGCRLGAEVGYTIRFEDCTSP 691

Query: 125 KTKIVFITEGLLLRQ 139
           +TKI ++T+G+L R+
Sbjct: 692 ETKIKYMTDGILQRE 706



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 1/126 (0%)

Query: 808  SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
             RTGPG C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP 
Sbjct: 929  GRTGPGKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPT 988

Query: 867  ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
              + +++  L    A+D +  +T LGR ++D P++  L K+L+        D ML +   
Sbjct: 989  NTMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVEMGCSDEMLSIVAM 1048

Query: 927  LNFGAI 932
            L+  +I
Sbjct: 1049 LSVHSI 1054



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q ++  D  L  Y V++LDE HER +  D L G++K  +    ++KII+ SAT++ + F 
Sbjct: 704  QREILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTIQRRPDLKIIVTSATLDADKFS 763

Query: 1173 TYFN 1176
             YFN
Sbjct: 764  EYFN 767


>gi|409052090|gb|EKM61566.1| hypothetical protein PHACADRAFT_112286 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1165

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 157/430 (36%), Positives = 236/430 (54%), Gaps = 23/430 (5%)

Query: 314  DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
            D   + Y V++LDE HER +  D L G++K  +   +++K+I+ SAT++ E F  YF   
Sbjct: 611  DPDCTQYSVVMLDEAHERTIATDVLFGLLKKAIKRRSDLKLIVTSATLDAEKFSKYFFGC 670

Query: 374  AKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMS 433
              I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GDVL+F++
Sbjct: 671  P-IFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLSEPP----GDVLLFLT 719

Query: 434  GISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
            G  EI +      E       K    +VLP++S L  E Q RVF   P G RK +V+TN+
Sbjct: 720  GQEEIDTACEILYERMKALGPKVPELMVLPIYSALPSEVQSRVFEPTPPGARKVVVATNV 779

Query: 490  AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYR 549
            AETS+TI GI +V+D G  K+ +YD    M +L    IS+A A QR GRAGRTGPG CYR
Sbjct: 780  AETSLTIPGIYYVIDPGFSKQNAYDPRLGMDSLVVMPISQAQARQRAGRAGRTGPGKCYR 839

Query: 550  LYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
            LY+E  + + +   S P+I+R ++ S +L+L  MG+ D+  F F++ PPA+ + +++ SL
Sbjct: 840  LYTEAAFRNEMLPNSIPDIQRTNLASTILTLKAMGVNDLLSFDFMDPPPAQTMLTALESL 899

Query: 609  TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
                A+D +  +T LGR ++D P+D PL KML+    +   + +LS+ A+LSVQS F   
Sbjct: 900  YALSALDDEGLLTRLGRKMADFPMDPPLAKMLIASVDYGCSEEILSVVAMLSVQSVFYRP 959

Query: 669  AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTK 728
              +    ++ + +     GD LT+L  Y  W    K    S  WC    I+ +       
Sbjct: 960  KEKQAQADSKKAKFHQPEGDHLTLLTVYNGW----KASNFSNPWCYENFIQARSMRRAQD 1015

Query: 729  LRSQFKQVLG 738
            +R   KQ+LG
Sbjct: 1016 VR---KQLLG 1022



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 75/114 (65%), Gaps = 3/114 (2%)

Query: 29  MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIAC 85
           M I+E + +LP+ + +  ++  +   +V+I+ GDTG GK+TQ+ QYL + G+    RI C
Sbjct: 494 MSIQEQRKNLPIYKLRDPLLQAIRDHQVLIVVGDTGSGKTTQMVQYLAEDGYADRGRIGC 553

Query: 86  TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           TQPRR+A +S++KRV+ E   +    VGY IRFE     +T+I ++T+G+L R+
Sbjct: 554 TQPRRVAAMSVAKRVSEEVGCRLGQEVGYTIRFEDCTSPETRIKYMTDGMLQRE 607



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 68/102 (66%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  + + +   S P+I+R ++ S +L+L  MG+ D+  F F++ PPA+
Sbjct: 831 RTGPGKCYRLYTEAAFRNEMLPNSIPDIQRTNLASTILTLKAMGVNDLLSFDFMDPPPAQ 890

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            + +++ SL    A+D +  +T LGR ++D P+D PL KML+
Sbjct: 891 TMLTALESLYALSALDDEGLLTRLGRKMADFPMDPPLAKMLI 932



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPK---QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            +E G  +   D    E R+K+      Q +   D   + Y V++LDE HER +  D L G
Sbjct: 578  QEVGYTIRFEDCTSPETRIKYMTDGMLQRESLIDPDCTQYSVVMLDEAHERTIATDVLFG 637

Query: 1146 VIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            ++K  +   +++K+I+ SAT++ E F  YF
Sbjct: 638  LLKKAIKRRSDLKLIVTSATLDAEKFSKYF 667


>gi|255723463|ref|XP_002546665.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22 [Candida
           tropicalis MYA-3404]
 gi|240130796|gb|EER30359.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP22 [Candida
           tropicalis MYA-3404]
          Length = 1027

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/445 (35%), Positives = 240/445 (53%), Gaps = 22/445 (4%)

Query: 300 VIKCLLHSTVEVAA--DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357
           VIK +    +E  A  D  +S Y +++LDE HER +  D L  ++K        +K+++ 
Sbjct: 464 VIKYMTDGMLEREALNDPSMSKYSLIMLDEAHERTIATDVLFALLKDAAKQNPNLKVVVT 523

Query: 358 SATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID 417
           SAT++   F  YFN    +I +PGR +P+++ Y    E+D   +  LD    I I     
Sbjct: 524 SATLDSNKFSKYFNNCP-VINIPGRTFPVEVLYTKEPEMDYLAA-ALDSVMQIHI----- 576

Query: 418 KKYPRTERGDVLIFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVF 473
                   GD+L+F++G  EI +   A  E      +     IVLP++S L  E Q R+F
Sbjct: 577 ----SEPAGDILVFLTGQEEIDTSCEALNERMKILGDSVPELIVLPVYSALPSEMQTRIF 632

Query: 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAE 533
              P G RK I++TNIAETSITIDGI +VVD G VK  SYD    M +L+   ISKA A 
Sbjct: 633 EPTPPGSRKVILATNIAETSITIDGIYYVVDPGFVKINSYDPKLGMDSLKVRPISKAQAN 692

Query: 534 QRKGRAGRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPF 592
           QR GRAGRTGPG CYRLY+E+ Y   +   + PEI+R ++   +L L  MG+ D+  F F
Sbjct: 693 QRSGRAGRTGPGKCYRLYTEQAYQKEMIANTIPEIQRQNLSHTILMLKAMGIEDLINFEF 752

Query: 593 LEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTV 652
           ++ P    + +++  L    A+D +  +T LGR +++LP++  L K L+  + +   + +
Sbjct: 753 MDPPSTSTLLTALEDLYILDALDDEGHLTGLGRRMAELPMEPALAKTLIKSAEYGCSEEI 812

Query: 653 LSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW 712
           L++ A+LSVQ+ F     +    +  +      +GD LT+LN ++ W         SK W
Sbjct: 813 LTIVAMLSVQTIFYRPKAQSALADQRKARFHHPYGDHLTLLNVFQSWY----RNNYSKSW 868

Query: 713 CKRRGIEEQRFYEVTKLRSQFKQVL 737
           C+   I+E+       +R+Q KQ++
Sbjct: 869 CQENFIQERSMRRAMDVRNQLKQIM 893



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 7/120 (5%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL-------VQAG 79
           T + I E + SLPV   +  +++++   + V+I G+TG GK+TQI QY+       +   
Sbjct: 357 TSLPIEEQRRSLPVYAMRSTLVESIRDNQFVVIVGETGSGKTTQIVQYIYEEHMNVIDGK 416

Query: 80  FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            + I CTQPRR+A  S++KRVA E   +  + VGY +RF+      T I ++T+G+L R+
Sbjct: 417 TKVIGCTQPRRVAATSVAKRVAEEVGCKVGDKVGYTVRFDDQTGPDTVIKYMTDGMLERE 476



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E+ Y   +   + PEI+R ++   +L L  MG+ D+  F F++ P   
Sbjct: 700 RTGPGKCYRLYTEQAYQKEMIANTIPEIQRQNLSHTILMLKAMGIEDLINFEFMDPPSTS 759

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            + +++  L    A+D +  +T LGR +++LP++  L K L+
Sbjct: 760 TLLTALEDLYILDALDDEGHLTGLGRRMAELPMEPALAKTLI 801



 Score = 46.6 bits (109), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 36/69 (52%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  +S Y +++LDE HER +  D L  ++K        +K+++ SAT++   F  YFN  
Sbjct: 480  DPSMSKYSLIMLDEAHERTIATDVLFALLKDAAKQNPNLKVVVTSATLDSNKFSKYFNNC 539

Query: 1179 AKDLLSGST 1187
                + G T
Sbjct: 540  PVINIPGRT 548


>gi|301119357|ref|XP_002907406.1| ATP-dependent RNA helicase DHX8 [Phytophthora infestans T30-4]
 gi|262105918|gb|EEY63970.1| ATP-dependent RNA helicase DHX8 [Phytophthora infestans T30-4]
          Length = 1158

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/436 (35%), Positives = 242/436 (55%), Gaps = 24/436 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E  AD+ LS Y  L+LDE HER ++ D L G++K L+ +  ++KII+ SAT++ E F  Y
Sbjct: 607  EYLADSTLSKYSALMLDEAHERTINTDVLFGLLKDLVRTRKDLKIIVTSATLDAEKFSRY 666

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F     I  +PGR +P+++ Y    ELD      LD      +L ++       E GD+L
Sbjct: 667  FFDCP-IFTIPGRTFPVEILYTKEPELDY-----LDAC----LLCVMQIHLSEPE-GDIL 715

Query: 430  IFMSGISEISSI-------VRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRK 482
            +F++G  EI +        ++A QE     +  I+LP++  L  E Q R+F  AP+G RK
Sbjct: 716  LFLTGQEEIDTACEVLYQRIKALQERALAPE-LIILPVYGALPSEMQSRIFEPAPKGSRK 774

Query: 483  CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542
            C+V+TNIAE S+TIDGI +VVD G  K+ +++    M +L     S+ASA QR GRAGRT
Sbjct: 775  CVVATNIAEASLTIDGIYYVVDPGFCKQNAFNSKIGMDSLVVVPCSQASARQRAGRAGRT 834

Query: 543  GPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENI 601
            GPG CYRLY+E  Y + +   + PEI+R ++ S++L L  MG+ D+  F F++ PP + +
Sbjct: 835  GPGKCYRLYTENAYKNEMLPTTVPEIQRANLGSVVLQLKAMGINDLMGFDFMDPPPQDAL 894

Query: 602  ESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
              ++ +L   GA+D +  +T LG+ +++ PV+    K+L+   +    + VL++ A+LSV
Sbjct: 895  VMALENLYALGALDDEGLLTRLGKKMAEFPVEPKNAKVLLTSVVLGCAEEVLTIVAMLSV 954

Query: 662  QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQ 721
            +S F     +    +  + +     GD LT+L  Y+ W   K     S  WC    I+ +
Sbjct: 955  ESVFFRPKEKQAQADQKKAKFHQPEGDHLTLLGVYEAWANSK----FSNPWCYDNFIQAR 1010

Query: 722  RFYEVTKLRSQFKQVL 737
                   +R Q   +L
Sbjct: 1011 AIRRAQDVRKQLLSIL 1026



 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 72/112 (64%), Gaps = 3/112 (2%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQ 87
           I E + SLPV + K++++  +   +V+++ G+TG GK+TQ+ QY+ + G      I CTQ
Sbjct: 496 ILEQRESLPVFKLKRQLMKAIADNQVLVVIGETGSGKTTQMTQYMAEMGLTSTGIIGCTQ 555

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           PRR+A  S++KRVA E   +    VGY +RFE     +T I ++TEG+LLR+
Sbjct: 556 PRRVAASSVAKRVAEEFGCELGQEVGYSMRFEDVTSPETVIKYMTEGMLLRE 607



 Score = 77.4 bits (189), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 65/102 (63%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y + +   + PEI+R ++ S++L L  MG+ D+  F F++ PP +
Sbjct: 833 RTGPGKCYRLYTENAYKNEMLPTTVPEIQRANLGSVVLQLKAMGINDLMGFDFMDPPPQD 892

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            +  ++ +L   GA+D +  +T LG+ +++ PV+    K+L+
Sbjct: 893 ALVMALENLYALGALDDEGLLTRLGKKMAEFPVEPKNAKVLL 934



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            AD+ LS Y  L+LDE HER ++ D L G++K L+ +  ++KII+ SAT++ E F  YF
Sbjct: 610  ADSTLSKYSALMLDEAHERTINTDVLFGLLKDLVRTRKDLKIIVTSATLDAEKFSRYF 667


>gi|380513573|ref|ZP_09856980.1| ATP-dependent RNA helicase [Xanthomonas sacchari NCPPB 4393]
          Length = 1370

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 243/460 (52%), Gaps = 46/460 (10%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+A+D +LSSYD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+   F  
Sbjct: 173 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKVIVTSATIDTARFAA 232

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVEL--------------DRTKSEKLDPGPYIRILS 414
           +F+  A +I V GR YP+++ Y P+ E               DRT ++         I++
Sbjct: 233 HFDD-APVISVEGRTYPVEVRYRPLEEAGGEEADADSGDNAGDRTVNQA--------IVA 283

Query: 415 IIDKKYPRTERGDVLIFMSGISEISSIVRA--AQEYNEKSQGWIVLPLHSTLSLEEQDRV 472
            ID+      RGDVL+F+ G  EI     A   ++Y E      VLPL++ LS  +QDRV
Sbjct: 284 AIDEITRLDPRGDVLVFLPGEREIRDAHHALERRKYRETE----VLPLYARLSNADQDRV 339

Query: 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASA 532
           F+  P   R+ +++TN+AETS+T+  IR+VVD G  +   Y    K+  L    IS+ASA
Sbjct: 340 FNPGPR--RRLVLATNVAETSLTVPRIRYVVDPGYARVKRYSPRQKLDRLHIEPISQASA 397

Query: 533 EQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPF 592
            QRKGR GR   G+CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG +  FPF
Sbjct: 398 NQRKGRCGRIAEGICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEDFPF 457

Query: 593 LEAPPAENIESSVRSLTQHGAIDSKER-----VTSLGRFLSDLPVDIPLGKMLVFGSMFH 647
           LE P    +    + L + GA+   +R     +T +GR ++ LPVD+ L +MLV      
Sbjct: 458 LEPPDERAVADGWQQLVELGAVGEPDRHGLRKLTEIGRKMARLPVDVKLARMLVAAQQHG 517

Query: 648 QIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDP----LTVLNAYKEWLGVK 703
            +  +L +AA L +Q P      R P+   A     +   D     + +L  +  +    
Sbjct: 518 CLRPMLVIAAFLGIQDPRE----RPPEAREAADNAHAKFADARSEFVGILRLWDGYRQAH 573

Query: 704 KDRVRSK--KWCKRRGIEEQRFYEVTKLRSQFKQVLGDSG 741
           +D  +SK   WC R  +   R  E  +L  Q   +  + G
Sbjct: 574 EDLTQSKLRDWCGRHFLGFLRMREWRELHRQLHLLCAELG 613



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+CYRLY+E  +    E++ PEIRR S+  ++L ++ +GLG +  FPFLE P   
Sbjct: 405 GRIAEGICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIEDFPFLEPPDER 464

Query: 868 NIESSVRSLTQHGAIDSKER-----VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
            +    + L + GA+   +R     +T +GR ++ LPVD+ L +MLV       +  ML+
Sbjct: 465 AVADGWQQLVELGAVGEPDRHGLRKLTEIGRKMARLPVDVKLARMLVAAQQHGCLRPMLV 524

Query: 923 LDLALNFGAIDSKER 937
             +A   G  D +ER
Sbjct: 525 --IAAFLGIQDPRER 537



 Score = 80.1 bits (196), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 68/103 (66%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LP+A+  + I+  + + +VV+IAG+TG GK+TQ+P+  + AG      I CTQPRRIA  
Sbjct: 70  LPIAREAERIVALIREHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIAAR 129

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ RVA E  +     VG+Q+RF     E+T+I F+T+G+LL
Sbjct: 130 AVASRVAEELRTPVGETVGFQVRFNDRVGEQTRIKFMTDGILL 172



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++A+D +LSSYD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+   F  
Sbjct: 173  AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKVIVTSATIDTARFAA 232

Query: 1174 YFN 1176
            +F+
Sbjct: 233  HFD 235



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++A+D +LSSYD +I+DE HER L  DFLLG +
Sbjct: 173 AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYL 206


>gi|423124037|ref|ZP_17111716.1| ATP-dependent RNA helicase hrpA [Klebsiella oxytoca 10-5250]
 gi|376401124|gb|EHT13734.1| ATP-dependent RNA helicase hrpA [Klebsiella oxytoca 10-5250]
          Length = 1281

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 161 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF  A  G R+ +++T
Sbjct: 274 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ-AHSG-RRIVLAT 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +     ++ PEI R ++ S++L +  +GLGD+  F F+EAP   NI+  VR 
Sbjct: 390 IRLYSEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDIAAFLFVEAPDKRNIQDGVRL 449

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E     ++T +GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 450 LEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 510 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 568

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + GL
Sbjct: 569 YLRVREWQDIYTQLRQVVKELGL 591



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 56  QNLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLA 115

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 116 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 160



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +     ++ PEI R ++ S++L +  +GLGD+  F F+EAP   
Sbjct: 382 GRVSEGICIRLYSEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDIAAFLFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E     ++T +GR LS LPVD  L +M++       +   ++
Sbjct: 442 NIQDGVRLLEELGAITTDEQQTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 501

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 502 ITSALSIQ--DPRER 514



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 161  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSR 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|322785811|gb|EFZ12430.1| hypothetical protein SINV_02380 [Solenopsis invicta]
          Length = 1134

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 151/425 (35%), Positives = 242/425 (56%), Gaps = 19/425 (4%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F  +F   A  
Sbjct: 551 LDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDSSKFSAFFGNAA-T 609

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
            ++PGR +P++     +V       + +D     ++L I    + + + GDVL+FM G  
Sbjct: 610 FQIPGRTFPVE-----VVHAKNPVEDYVDAA-VKQVLQI----HLQPKSGDVLVFMPGQE 659

Query: 437 EISSIVRAAQEY---NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETS 493
           +I     A +E     E +    +LP++S L  + Q ++F  +  GLRKC+V+TNIAETS
Sbjct: 660 DIEVTCEALKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRSEGGLRKCVVATNIAETS 719

Query: 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553
           +T+DGI FVVDSG  K   Y+    M  LQ + +S+A+A+QR+GRAGRTGPG C+RLY+ 
Sbjct: 720 LTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRQGRAGRTGPGQCHRLYTR 779

Query: 554 EQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHG 612
            QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +NI +S+  L   G
Sbjct: 780 RQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQLWILG 839

Query: 613 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRD 672
           A+D   R+T LGR +++ P+D P  +ML+  S       +L + ++LSV S F     R+
Sbjct: 840 ALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSIFYRPKGRE 899

Query: 673 PDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQ 732
            D ++AR++ +    D LT LN Y +W    K    S  WC    I  +   +V ++RSQ
Sbjct: 900 EDSDSAREKFQVPESDHLTYLNVYNQW----KANGYSSSWCNDHFIHAKAMRKVREVRSQ 955

Query: 733 FKQVL 737
            +++L
Sbjct: 956 LEEIL 960



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 15/137 (10%)

Query: 18  DFKQKEKFSTLM------------KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGC 65
           DFK  +K++  +             I+  + SLPV   +QE+++ + +  VV+I G+TG 
Sbjct: 408 DFKAGQKYARHIGSGEVTGEARHRSIQHQRRSLPVFAVRQELLNVIRENSVVVIVGETGS 467

Query: 66  GKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR 122
           GK+TQ+ QYL + G+ R   I CTQPRR+A +S++KRV+ E  +   + VGY IRFE   
Sbjct: 468 GKTTQLTQYLHEDGYSRHGIIGCTQPRRVAAMSVAKRVSDEMATALGDKVGYAIRFEDCT 527

Query: 123 REKTKIVFITEGLLLRQ 139
            + T I ++T+G+LLR+
Sbjct: 528 SKDTVIKYMTDGILLRE 544



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG C+RLY+  QY   L     PEI+R ++ + +L L  +G+ D+  F F++ PP +
Sbjct: 767 RTGPGQCHRLYTRRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQD 826

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           NI +S+  L   GA+D   R+T LGR +++ P+D P  +ML+  S       +L++   L
Sbjct: 827 NILNSLYQLWILGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSML 886

Query: 928 NFGAI 932
           +  +I
Sbjct: 887 SVPSI 891



 Score = 47.4 bits (111), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L  Y V+++DE HER L  D L G+++ ++    ++K+I+ SAT++   F  +F   A  
Sbjct: 551  LDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDSSKFSAFFGNAATF 610

Query: 1182 LLSGST 1187
             + G T
Sbjct: 611  QIPGRT 616


>gi|190344682|gb|EDK36410.2| hypothetical protein PGUG_00508 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1115

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/433 (35%), Positives = 235/433 (54%), Gaps = 20/433 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  +S Y V++LDE HER +  D L  ++K        +KII+ SAT++ E F  Y
Sbjct: 552 EALNDKEMSKYSVIMLDEAHERTIATDVLFALLKQAASKNPNLKIIVTSATLDSEKFSNY 611

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F     I+K+PGR +P+++ Y    E+D   +  LD      ++ I   + P    GD+L
Sbjct: 612 FFNCP-IMKIPGRTFPVEIMYTKEPEVDYLAA-ALD-----SVVQIHVSEGP----GDIL 660

Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F++G  EI      + +  +   E +   I+LP++S L  E Q R+F   P G RK I+
Sbjct: 661 VFLTGQEEIDMSCEILYQRMKVLREAAGELIILPVYSALPSEMQSRIFEPTPAGARKVIL 720

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETS+TIDGI +V+D G VK  ++D    M TL+   IS+A A QR GRAGRTGPG
Sbjct: 721 ATNIAETSVTIDGIYYVIDPGYVKINAFDSKLGMDTLKVSPISQAQANQRSGRAGRTGPG 780

Query: 546 VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            CYRLY+E  Y + +   + PEI+R ++   +L L  MG+ D+  F F++ PPA  + ++
Sbjct: 781 KCYRLYTEAAYRNEMLPNTVPEIQRQNLAYTILMLKAMGINDLVNFEFMDPPPASTMVTA 840

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           ++ L    A+     +T LGR ++D P+D  L K L+    F   + +LS+ A+LSVQS 
Sbjct: 841 LQDLYTLSALGDDGYLTGLGRKMADFPMDPGLAKTLIASVEFGCSEDILSIVAMLSVQSV 900

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F     +    +  +    S  GD LT+LN Y+ W         SK+WC    I E+   
Sbjct: 901 FYRPKDKAVAADQRKARFHSPFGDHLTLLNVYRAW----SMNGSSKQWCSNNFIHERSMR 956

Query: 725 EVTKLRSQFKQVL 737
              ++R Q   ++
Sbjct: 957 RAQEVRRQLVTIM 969



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 82/136 (60%), Gaps = 14/136 (10%)

Query: 18  DFKQKEKFS-------TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQ 70
           ++++KEK +       T + I+E + +LPV   + +I+  V + + ++I G+TG GK+TQ
Sbjct: 417 EWREKEKKTKVSFGKRTNLPIKEQRETLPVFSMRDDIVKAVRENQFLVIVGETGSGKTTQ 476

Query: 71  IPQYLVQAGFQR-------IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRR 123
           I QYL + GF +       I CTQPRR+A  S++KRV+ E   +    VGY IRF+    
Sbjct: 477 IVQYLYEEGFNQQGDQTKLIGCTQPRRVAAESVAKRVSEEVGCKIGETVGYTIRFDDKTG 536

Query: 124 EKTKIVFITEGLLLRQ 139
             T+I ++T+G+L R+
Sbjct: 537 PNTRIKYMTDGMLQRE 552



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 1/107 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y + +   + PEI+R ++   +L L  MG+ D+  F F++ PPA 
Sbjct: 776 RTGPGKCYRLYTEAAYRNEMLPNTVPEIQRQNLAYTILMLKAMGINDLVNFEFMDPPPAS 835

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMF 914
            + ++++ L    A+     +T LGR ++D P+D  L K L+    F
Sbjct: 836 TMVTALQDLYTLSALGDDGYLTGLGRKMADFPMDPGLAKTLIASVEF 882



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q +   D  +S Y V++LDE HER +  D L  ++K        +KII+ SAT++ E F 
Sbjct: 550  QREALNDKEMSKYSVIMLDEAHERTIATDVLFALLKQAASKNPNLKIIVTSATLDSEKFS 609

Query: 1173 TYF 1175
             YF
Sbjct: 610  NYF 612


>gi|251789393|ref|YP_003004114.1| ATP-dependent RNA helicase HrpA [Dickeya zeae Ech1591]
 gi|247538014|gb|ACT06635.1| ATP-dependent helicase HrpA [Dickeya zeae Ech1591]
          Length = 1295

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/441 (35%), Positives = 243/441 (55%), Gaps = 18/441 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ + F  
Sbjct: 176 AEIQQDRLLMQYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPQRFSR 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A II+V GR YP+ + Y P+VE    +++  D      IL  +D+       GD+
Sbjct: 236 HFGN-APIIEVSGRTYPVDVRYRPVVE----EAQDSDRDQLQAILDAVDE-LCHEGPGDI 289

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+FMSG  EI     A  + +       +LPL++ LS +EQ+RVFH +  G R+ +++TN
Sbjct: 290 LVFMSGEREIRDTADALSKQDLPHTE--ILPLYARLSSQEQNRVFH-SHHG-RRIVLATN 345

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GIR+V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 346 VAETSLTVPGIRYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVAAGICI 405

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR L
Sbjct: 406 RLYSEQDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLL 465

Query: 609 TQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            + GAI    D + R+T  GR L+ LPVD  L +M++       +   + + A LS+Q P
Sbjct: 466 EELGAIETSDDGRYRLTPQGRQLAQLPVDPRLARMVLEARQTSCVREAMIITAALSIQDP 525

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIEEQ 721
                 +    E   +       D L  +N + ++L  ++  + S   +K C+   +   
Sbjct: 526 RERPTEKKQAAEEKHRRFADKESDFLAFVNLW-DYLQEQQKALSSSQFRKLCRSDYLNYL 584

Query: 722 RFYEVTKLRSQFKQVLGDSGL 742
           R  E   + +Q +QV+ + G 
Sbjct: 585 RVREWQDIYTQLRQVVKELGF 605



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 6/136 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 397 GRVAAGICIRLYSEQDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 456

Query: 868 NIESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI+  VR L + GAI    D + R+T  GR L+ LPVD  L +M++       +   +++
Sbjct: 457 NIQDGVRLLEELGAIETSDDGRYRLTPQGRQLAQLPVDPRLARMVLEARQTSCVREAMII 516

Query: 924 DLALNFGAIDSKERVT 939
             AL+    D +ER T
Sbjct: 517 TAALSIQ--DPRERPT 530



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 75/119 (63%), Gaps = 4/119 (3%)

Query: 22  KEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-- 79
           +++ ++L  IR  + +LPV+Q ++ I+  +   +VVI+AG+TG GK+TQ+P+  ++ G  
Sbjct: 58  EQRRTSLPAIRYPE-ALPVSQKREAILTAIRDHQVVIVAGETGSGKTTQLPKMCLELGRG 116

Query: 80  -FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
               I  TQPRR+A  S++ R+A E  +   + VGY++RF     + T +  +T+G+LL
Sbjct: 117 VTGLIGHTQPRRLAARSVADRIAAELETSLGSTVGYKVRFNDQVGDNTLVKLMTDGILL 175



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ + F  
Sbjct: 176  AEIQQDRLLMQYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPQRFSR 235

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 236  HFGNAPIIEVSGRT 249


>gi|425067989|ref|ZP_18471105.1| ATP-dependent RNA helicase hrpA [Proteus mirabilis WGLW6]
 gi|404600372|gb|EKB00807.1| ATP-dependent RNA helicase hrpA [Proteus mirabilis WGLW6]
          Length = 1298

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 251/446 (56%), Gaps = 26/446 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 176 AELQQDKLLLQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSK 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPI----VELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424
           +FN+ A II+V GR YP+++ Y PI    ++ D+  +E         I+  ID+   R  
Sbjct: 236 HFNQ-APIIEVSGRTYPVEVRYRPIGGDALDSDKDMTEG--------IIDAIDE-LSRES 285

Query: 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            GD+LIFMSG  EI     A  +   +     VLPL + LS  EQ+R+F   P   R+ I
Sbjct: 286 AGDILIFMSGEREIRDTAEALNKLQLRHTE--VLPLFARLSNSEQNRIFQ--PHTGRRII 341

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TN+AETS+T+ GI++V+D+G  +   Y    K+  L    IS+ASA+QRKGR GR   
Sbjct: 342 LATNVAETSLTVPGIKYVIDTGYARISRYSYRTKVQRLPIEPISQASADQRKGRCGRVSD 401

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G+C RLYSE+ +   A+++ PEI R ++ S++L +  +GLGD+  FPF++AP   NI+  
Sbjct: 402 GICIRLYSEDDFISRAQFTDPEILRTNLASVILQMTSIGLGDISGFPFVQAPDKRNIQDG 461

Query: 605 VRSLTQHGAI----DSKE--RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
           VR L + GA+    D+K   R+T +G+ L+ LP+D  L +M++    +  +  ++ + + 
Sbjct: 462 VRLLEELGALQEGTDNKGAYRLTPMGKQLAQLPIDPRLARMVLEARKYGAVRELMVITSA 521

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRR 716
           LS+Q P      +    +   +  +    D L++LN +      +K+   S  +K C++ 
Sbjct: 522 LSIQDPRERPMDKQQASDEKHRRFQDKDSDFLSLLNLWDYLKTQQKELSHSQFRKHCRQE 581

Query: 717 GIEEQRFYEVTKLRSQFKQVLGDSGL 742
            +   R  E   + +Q +QV+ + G 
Sbjct: 582 FLNFMRVREWQDVYTQLRQVVKELGF 607



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 82/135 (60%), Gaps = 8/135 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +   A+++ PEI R ++ S++L +  +GLGD+  FPF++AP   N
Sbjct: 398 RVSDGICIRLYSEDDFISRAQFTDPEILRTNLASVILQMTSIGLGDISGFPFVQAPDKRN 457

Query: 869 IESSVRSLTQHGAI----DSKE--RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           I+  VR L + GA+    D+K   R+T +G+ L+ LP+D  L +M++    +  +  +++
Sbjct: 458 IQDGVRLLEELGALQEGTDNKGAYRLTPMGKQLAQLPIDPRLARMVLEARKYGAVRELMV 517

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 518 ITSALSIQ--DPRER 530



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIAC 93
           +LPV+Q K+ I + +   +VVIIAG+TG GK+TQIP+  ++ G      I  TQPRR+A 
Sbjct: 72  NLPVSQKKEAIYNAIKDNQVVIIAGETGSGKTTQIPKICLELGRGVKGYIGHTQPRRLAA 131

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S+++R+A+E  +     VGY++RF  H  + T +  +T+G+LL
Sbjct: 132 RSVAERIAHELNTTLGESVGYKVRFSDHVGDNTLVKLMTDGILL 175



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 176  AELQQDKLLLQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSK 235

Query: 1174 YFNRIAKDLLSGST 1187
            +FN+     +SG T
Sbjct: 236  HFNQAPIIEVSGRT 249


>gi|146311601|ref|YP_001176675.1| ATP-dependent RNA helicase HrpA [Enterobacter sp. 638]
 gi|145318477|gb|ABP60624.1| ATP-dependent helicase HrpA [Enterobacter sp. 638]
          Length = 1300

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 157/445 (35%), Positives = 247/445 (55%), Gaps = 25/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ + F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPQRFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEDADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF--HYAPEGLRKCIV 485
           +LIFMSG  EI     A  + + +     +LPL++ LS  EQ+RVF  H+     R+ ++
Sbjct: 293 ILIFMSGEREIRDTADALSKRDLRHTE--ILPLYARLSNSEQNRVFQSHHG----RRIVL 346

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G
Sbjct: 347 ATNVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEG 406

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 407 ICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGV 466

Query: 606 RSLTQHGAIDSKERVTSL-----GRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           R L + GAI + E+ T+      GR LS LPVD  L +M++       +   + + + LS
Sbjct: 467 RLLEELGAITTDEQATAYKLTLQGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALS 526

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   
Sbjct: 527 IQDPRERPMDKKQAPDEMHRRFHDKESDFLAFVNLWN-YLGEQQKALTSNAFRRLCRTEY 585

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + G+
Sbjct: 586 LNYLRVREWQDIYTQLRQVVKELGI 610



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKERVTTL-----GRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E+ T       GR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQATAYKLTLQGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQEI++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQEILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTLVKLMTDGILL 179



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ + F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPQRFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|317419652|emb|CBN81689.1| ATP-dependent RNA helicase DHX8 [Dicentrarchus labrax]
          Length = 682

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 160/446 (35%), Positives = 245/446 (54%), Gaps = 24/446 (5%)

Query: 300 VIKCLLHSTV--EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357
           VIK + H  +  E   D+ +S Y +++LDE HER +H D L G++K  +    ++K+I+ 
Sbjct: 119 VIKYMTHGMLQRECLLDSDMSQYSLIMLDEAHERTIHTDVLFGLLKKTIQKRKDMKLIVS 178

Query: 358 SATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID 417
           SAT++   F  YF   A I  +PGR +P+++ Y    E D      LD G  I ++ I  
Sbjct: 179 SATLDAVKFSQYFFE-APIFTIPGRTFPVEVLYAKEPETD-----YLDAG-LITVMQIHL 231

Query: 418 KKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRV 472
            + P    GD+L+F++G  EI +      E   KS G      I+LP++S L  E Q R+
Sbjct: 232 TEPP----GDILVFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRI 286

Query: 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASA 532
           F  AP G RK I++TNIAETS+TIDGI +VVD G VK++ Y+    +  L    IS+A A
Sbjct: 287 FDPAPPGSRKVIIATNIAETSLTIDGIYYVVDPGFVKQIVYNSKTGIDQLVVTPISQAQA 346

Query: 533 EQRKGRAGRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFP 591
           +QR GRAGRTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F 
Sbjct: 347 KQRSGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLAFD 406

Query: 592 FLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDT 651
           F++APP E +  ++  L   GA+D +  +T LGR +++ P++  L KML+        + 
Sbjct: 407 FMDAPPMETLIIAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEE 466

Query: 652 VLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKK 711
           +L++ ++LSVQ+ F     +    +  + +     GD LT+L  Y  W    K+   S  
Sbjct: 467 MLTIVSMLSVQNIFYRPKDKQALADQKKTKFFQPEGDHLTLLAVYNSW----KNNKFSNP 522

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQVL 737
           WC    I+ +       +R Q   ++
Sbjct: 523 WCFENFIQARSLKRAQDIRKQMLSIM 548



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 3/97 (3%)

Query: 46  EIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAY 102
           E+   V   +++I+ G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ 
Sbjct: 35  ELPQAVHDNQILIVVGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSE 94

Query: 103 ETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           E   +    VGY IRFE     +T I ++T G+L R+
Sbjct: 95  EYGCRLGQEVGYTIRFEDCTSTETVIKYMTHGMLQRE 131



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 355 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLAFDFMDAPPME 414

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVF 910
            +  ++  L   GA+D +  +T LGR +++ P++  L KML+ 
Sbjct: 415 TLIIAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIM 457



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 1089 EEAGERLESMDANEVEFRLK---HDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            +E G  +   D    E  +K   H   Q +   D+ +S Y +++LDE HER +H D L G
Sbjct: 102  QEVGYTIRFEDCTSTETVIKYMTHGMLQRECLLDSDMSQYSLIMLDEAHERTIHTDVLFG 161

Query: 1146 VIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            ++K  +    ++K+I+ SAT++   F  YF
Sbjct: 162  LLKKTIQKRKDMKLIVSSATLDAVKFSQYF 191


>gi|255940746|ref|XP_002561142.1| Pc16g08210 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585765|emb|CAP93491.1| Pc16g08210 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 925

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 153/427 (35%), Positives = 242/427 (56%), Gaps = 22/427 (5%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y  +++DE HER L+ D L+G++K +L    ++K+I+ SAT+N E F  +F   A+ 
Sbjct: 301 LDKYSCIIMDEAHERALNTDVLMGLLKKVLTRRRDLKLIVTSATMNSERFSRFFGGAAEF 360

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
           I +PGR +P+ L +       RT  E        ++L+I    +     GD+L+FM+G  
Sbjct: 361 I-IPGRTFPVDLHF------SRTPCEDYVDSAVKQVLAI----HVSQGAGDILVFMTGQE 409

Query: 437 EISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
           +I +     +E     N+  +   VLP++S +  E+Q R+F  A  G+RK IV+TNIAET
Sbjct: 410 DIEATCELVEERLKQLNDPPK-LSVLPIYSQMPAEQQARIFEKAAPGVRKVIVATNIAET 468

Query: 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
           S+T+DGI FVVD+G  K   Y+    M +LQ   IS+A+A QR GRAGRTGPG  YRLY+
Sbjct: 469 SLTVDGIMFVVDAGYSKLKVYNPRMGMDSLQVTPISQANANQRSGRAGRTGPGKAYRLYT 528

Query: 553 EEQYSLLAEYST-PEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQH 611
           E  Y      ST PEI+R S+ + +L L  +G+ D+  F F++ PP E I +S+  L   
Sbjct: 529 ETAYKNELYISTIPEIQRTSLANTILLLKSLGVKDLLDFDFMDPPPQETISTSLFELWSL 588

Query: 612 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQI-DTVLSLAAVLSVQSPFTNRAF 670
           GA+D+   +T LGR ++  P+D PL K+++  S  ++  + +LS+ A+LSV + F     
Sbjct: 589 GALDNLGELTPLGRRMTPFPMDPPLAKLIIMASDEYECSEEMLSIVAMLSVPNVFYRPKE 648

Query: 671 RDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLR 730
           R  + ++AR++      D LT+L+ Y +W    K    S  WC +  +  +      ++R
Sbjct: 649 RQEESDSAREKFFVPESDHLTLLHVYTQW----KTNGHSDAWCTKHFLHSKTLRRAKEVR 704

Query: 731 SQFKQVL 737
            Q + ++
Sbjct: 705 DQLQDIM 711



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 76/118 (64%), Gaps = 3/118 (2%)

Query: 25  FSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR-- 82
           FS    +RE +  LP    +++++  +   +VV++ G+TG GK+TQ+ Q+L + G+ +  
Sbjct: 177 FSKSKTMREQREYLPAFAVREDLMRVIRDNQVVVVVGETGSGKTTQLTQFLHEDGYSKFG 236

Query: 83  -IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            I CTQPRR+A +S++KRV+ E   +   LVGY IRFE    + T I ++T+G+LLR+
Sbjct: 237 MIGCTQPRRVAAMSVAKRVSEEMDVELGALVGYSIRFEDCTSDDTVIKYMTDGVLLRE 294



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYST-PEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG  YRLY+E  Y      ST PEI+R S+ + +L L  +G+ D+  F F++ PP 
Sbjct: 516 GRTGPGKAYRLYTETAYKNELYISTIPEIQRTSLANTILLLKSLGVKDLLDFDFMDPPPQ 575

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
           E I +S+  L   GA+D+   +T LGR ++  P+D PL K+++  S  ++    +L  +A
Sbjct: 576 ETISTSLFELWSLGALDNLGELTPLGRRMTPFPMDPPLAKLIIMASDEYECSEEMLSIVA 635

Query: 927 L 927
           +
Sbjct: 636 M 636



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L  Y  +++DE HER L+ D L+G++K +L    ++K+I+ SAT+N E F  +F   A+ 
Sbjct: 301  LDKYSCIIMDEAHERALNTDVLMGLLKKVLTRRRDLKLIVTSATMNSERFSRFFGGAAEF 360

Query: 1182 LLSGST 1187
            ++ G T
Sbjct: 361  IIPGRT 366


>gi|389751560|gb|EIM92633.1| P-loop containing nucleoside triphosphate hydrolase protein [Stereum
            hirsutum FP-91666 SS1]
          Length = 1158

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 152/434 (35%), Positives = 234/434 (53%), Gaps = 23/434 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  LS+Y +++LDE HER +  D L G++K  +    ++K+I+ SAT++ E F  Y
Sbjct: 600  ECLIDPDLSNYSIIMLDEAHERTISTDVLFGLLKKAIKRRPDLKLIVTSATLDAEKFSKY 659

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F     I  +PGR +P+++ Y    E D   +        I ++ I    +    RGD+L
Sbjct: 660  FFGCP-IFTIPGRTFPVEILYTKEPESDYMDAS------LITVMQI----HLSEPRGDIL 708

Query: 430  IFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
            +F++G  EI +      E       K    ++LP++S L  E Q RVF   P G RK ++
Sbjct: 709  LFLTGQEEIDTACEILYERMKALGPKVPELLILPIYSALPSEVQSRVFEPTPPGARKVVI 768

Query: 486  STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
            +TN+AETS+TI GI +V+D G  K+ +YD    M +L    IS+A A QR GRAGRTGPG
Sbjct: 769  ATNVAETSLTIPGIYYVIDPGFSKQNAYDPRLGMDSLVVMPISQAQARQRSGRAGRTGPG 828

Query: 546  VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
             CYRLY+E  Y + +   S P+I+R ++   +L L  MG+ D+  F F++ PPA+ + ++
Sbjct: 829  KCYRLYTEAAYRNEMLPNSIPDIQRTNLSHTILMLKAMGINDLLSFDFMDPPPAQTMLTA 888

Query: 605  VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            + SL    A+D +  +T LGR ++D P++ PL KML+        + +LS+ A+LSVQS 
Sbjct: 889  LESLYALSALDDEGLLTRLGRKMADFPMEPPLAKMLIASVELGCSEEILSIVAMLSVQSV 948

Query: 665  FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
            F     +    ++ + +     GD LT+L  Y  W G       S  WC    I+ +   
Sbjct: 949  FYRPKEKQGQADSKKAKFHQPEGDHLTLLTVYNGWKGAN----YSNPWCYENFIQARSMR 1004

Query: 725  EVTKLRSQFKQVLG 738
                +R   KQ+LG
Sbjct: 1005 RAQDVR---KQLLG 1015



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 76/116 (65%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RI 83
           T + I++ + SLP+ + +  ++  V    V+I+ GDTG GK+TQ+ QYL +AG+    +I
Sbjct: 485 TSLSIQDQRKSLPIYKLRDALLQAVNDHPVLIVVGDTGSGKTTQMTQYLAEAGYADKGKI 544

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A +S++KRVA E   +    VGY IRFE     +T+I ++T+G+L R+
Sbjct: 545 GCTQPRRVAAMSVAKRVAEEVGCRLGQEVGYTIRFEDCTSPETRIKYMTDGMLQRE 600



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 66/102 (64%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y + +   S P+I+R ++   +L L  MG+ D+  F F++ PPA+
Sbjct: 824 RTGPGKCYRLYTEAAYRNEMLPNSIPDIQRTNLSHTILMLKAMGINDLLSFDFMDPPPAQ 883

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            + +++ SL    A+D +  +T LGR ++D P++ PL KML+
Sbjct: 884 TMLTALESLYALSALDDEGLLTRLGRKMADFPMEPPLAKMLI 925



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPK---QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            +E G  +   D    E R+K+      Q +   D  LS+Y +++LDE HER +  D L G
Sbjct: 571  QEVGYTIRFEDCTSPETRIKYMTDGMLQRECLIDPDLSNYSIIMLDEAHERTISTDVLFG 630

Query: 1146 VIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            ++K  +    ++K+I+ SAT++ E F  YF
Sbjct: 631  LLKKAIKRRPDLKLIVTSATLDAEKFSKYF 660


>gi|385788417|ref|YP_005819526.1| ATP-dependent RNA helicase HrpA [Erwinia sp. Ejp617]
 gi|310767689|gb|ADP12639.1| ATP-dependent RNA helicase HrpA [Erwinia sp. Ejp617]
          Length = 1300

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 246/445 (55%), Gaps = 26/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A +I+V GR YP+++ Y P+VE    +++  D      I   +D+   R  RGD+
Sbjct: 240 HFHN-APVIEVSGRTYPVEVRYRPVVE----EADDSDRDQLQAIFDAVDE-LGRESRGDI 293

Query: 429 LIFMSGISEI----SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           LIFMSG  EI     ++++    + E      VLPL++ LS  EQ+RVF       R+ +
Sbjct: 294 LIFMSGEREIRDTADALIKRDLPHTE------VLPLYARLSNAEQNRVFQ--SHAGRRIV 345

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   
Sbjct: 346 LATNVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEAISQASANQRKGRCGRVSE 405

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G+C RLY+E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  
Sbjct: 406 GICIRLYAEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDISAFPFVEAPDRRNIQDG 465

Query: 605 VRSLTQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           VR L + GAI    +   R+T  GR L+ LPVD  L KM++    +  +  V+ + A LS
Sbjct: 466 VRLLEELGAITLADNQHYRLTPSGRALAQLPVDPRLAKMVLEAQKYGCVREVMIITAALS 525

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P    A +    +   +       D +  +N +  WL  ++  + S   ++ CK   
Sbjct: 526 IQDPRERPADKKQASDEKHQRFADKESDFIAFVNLWN-WLQEQQKALSSSQFRRQCKTDY 584

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + GL
Sbjct: 585 LNYLRVREWQDIYTQLRQVVRELGL 609



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 6/133 (4%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLY+E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYAEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDISAFPFVEAPDRRN 461

Query: 869 IESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLD 924
           I+  VR L + GAI    +   R+T  GR L+ LPVD  L KM++    +  +  ++++ 
Sbjct: 462 IQDGVRLLEELGAITLADNQHYRLTPSGRALAQLPVDPRLAKMVLEAQKYGCVREVMIIT 521

Query: 925 LALNFGAIDSKER 937
            AL+    D +ER
Sbjct: 522 AALSIQ--DPRER 532



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 4/110 (3%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQ 87
           IR  +N LPV+Q KQEI D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQ
Sbjct: 71  IRYPEN-LPVSQKKQEIADAIRASQVVIVAGETGSGKTTQLPKICLELGRGIRGLIGHTQ 129

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           PRR+A  ++++R+A E        VGY++RF     + T++  +T+G+LL
Sbjct: 130 PRRLAARTVAERIASELEISLGGCVGYKVRFNDKVGDTTQVKLMTDGILL 179



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 240  HFHNAPVIEVSGRT 253


>gi|330445914|ref|ZP_08309566.1| ATP-dependent helicase HrpA [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490105|dbj|GAA04063.1| ATP-dependent helicase HrpA [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 1279

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 153/437 (35%), Positives = 246/437 (56%), Gaps = 19/437 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD +++DE HER L+ DF++G ++ LL    ++K+I+ SATI+ E F  
Sbjct: 161 AEIQHDRYLNQYDTIIIDEAHERSLNIDFIMGYLRELLPKRPDLKVIITSATIDPERFSK 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y P+VE  D T  ++LD      I   +D+     E GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPVVEDGDDTDRDQLDA-----IFDAVDELCDEGE-GD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFM+G  EI     A ++   K +   +LPL++ LS  EQ+RVF       R+ ++ST
Sbjct: 274 ILIFMNGEREIRDTADALEK--RKLRNTEILPLYARLSAGEQNRVFQ--SHSGRRIVLST 329

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QR GR GR   G+C
Sbjct: 330 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRMGRCGRVQEGIC 389

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   NI+  +R 
Sbjct: 390 IRLYSEEDFLSRPEFTDPEILRTNLASVILQMTSIGLGDIQAFPFVEAPDNRNIQDGIRL 449

Query: 608 LTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI     D ++R++ +GR L+ LP+D  L +M++       +  V+ +AA LS+Q
Sbjct: 450 LEELGAINPKATDPRKRLSPMGRQLARLPIDPRLARMVLEAPKHGALREVMIIAAGLSIQ 509

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEE 720
            P    + +    +   +       D +  +N +      +K+   +  ++ CK+  +  
Sbjct: 510 DPRERPSDKQQQSDEKHRRFNDKDSDFVAFVNLWDYIQEQQKELSNNQFRRLCKKDYLNY 569

Query: 721 QRFYEVTKLRSQFKQVL 737
            R  E   +  Q  QV+
Sbjct: 570 LRIREWQDIYFQINQVI 586



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +    E++ PEI R ++ S++L +  +GLGD++ FPF+EAP   
Sbjct: 382 GRVQEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTSIGLGDIQAFPFVEAPDNR 441

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  +R L + GAI     D ++R++ +GR L+ LP+D  L +M++       +  +++
Sbjct: 442 NIQDGIRLLEELGAINPKATDPRKRLSPMGRQLARLPIDPRLARMVLEAPKHGALREVMI 501

Query: 923 LDLALNFGAIDSKER 937
           +   L+    D +ER
Sbjct: 502 IAAGLSIQ--DPRER 514



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
            LPV+Q K EI   +L  +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  QLPVSQKKDEIAQAILNNQVVIVAGETGSGKTTQLPKICLEIGRGTHGMIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S++ R+A E   +  + VGY++RF     E + +  +T+G+LL
Sbjct: 117 RSVASRIAEEMECEMGSHVGYKVRFNDQVSEHSHVKLMTDGILL 160



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD +++DE HER L+ DF++G ++ LL    ++K+I+ SATI+ E F  
Sbjct: 161  AEIQHDRYLNQYDTIIIDEAHERSLNIDFIMGYLRELLPKRPDLKVIITSATIDPERFSK 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|197285052|ref|YP_002150924.1| ATP-dependent RNA helicase HrpA [Proteus mirabilis HI4320]
 gi|194682539|emb|CAR42541.1| ATP-dependent helicase [Proteus mirabilis HI4320]
          Length = 1298

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 251/446 (56%), Gaps = 26/446 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 176 AELQQDKLLLQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSK 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPI----VELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424
           +FN+ A II+V GR YP+++ Y PI    ++ D+  +E         I+  ID+   R  
Sbjct: 236 HFNQ-APIIEVSGRTYPVEVRYRPIGGDALDSDKDMTEG--------IIDAIDE-LSRES 285

Query: 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            GD+LIFMSG  EI     A  +   +     VLPL + LS  EQ+R+F   P   R+ I
Sbjct: 286 AGDILIFMSGEREIRDTAEALNKLQLRHTE--VLPLFARLSNSEQNRIFQ--PHTGRRII 341

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TN+AETS+T+ GI++V+D+G  +   Y    K+  L    IS+ASA+QRKGR GR   
Sbjct: 342 LATNVAETSLTVPGIKYVIDTGYARISRYSYRTKVQRLPIEPISQASADQRKGRCGRVSD 401

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G+C RLYSE+ +   A+++ PEI R ++ S++L +  +GLGD+  FPF++AP   NI+  
Sbjct: 402 GICIRLYSEDDFISRAQFTDPEILRTNLASVILQMTSIGLGDISGFPFVQAPDKRNIQDG 461

Query: 605 VRSLTQHGAI----DSKE--RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
           VR L + GA+    D+K   R+T +G+ L+ LP+D  L +M++    +  +  ++ + + 
Sbjct: 462 VRLLEELGALQEGTDNKGAYRLTPMGKQLAQLPIDPRLARMVLEARKYGAVRELMVITSA 521

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRR 716
           LS+Q P      +    +   +  +    D L++LN +      +K+   S  +K C++ 
Sbjct: 522 LSIQDPRERPMDKQQASDEKHRRFQDKDSDFLSLLNLWDYLKTQQKELSHSQFRKHCRQE 581

Query: 717 GIEEQRFYEVTKLRSQFKQVLGDSGL 742
            +   R  E   + +Q +QV+ + G 
Sbjct: 582 FLNFMRVREWQDVYTQLRQVVKELGF 607



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 82/136 (60%), Gaps = 8/136 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +   A+++ PEI R ++ S++L +  +GLGD+  FPF++AP   
Sbjct: 397 GRVSDGICIRLYSEDDFISRAQFTDPEILRTNLASVILQMTSIGLGDISGFPFVQAPDKR 456

Query: 868 NIESSVRSLTQHGAI----DSKE--RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           NI+  VR L + GA+    D+K   R+T +G+ L+ LP+D  L +M++    +  +  ++
Sbjct: 457 NIQDGVRLLEELGALQEGTDNKGAYRLTPMGKQLAQLPIDPRLARMVLEARKYGAVRELM 516

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 517 VITSALSIQ--DPRER 530



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIAC 93
           +LPV+Q K+ I + +   +VVIIAG+TG GK+TQIP+  ++ G      I  TQPRR+A 
Sbjct: 72  NLPVSQKKEAIYNAIKDNQVVIIAGETGSGKTTQIPKICLELGRGVKGYIGHTQPRRLAA 131

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S+++R+A+E  +     VGY++RF  H  + T +  +T+G+LL
Sbjct: 132 RSVAERIAHELNTTLGESVGYKVRFSDHVGDNTLVKLMTDGILL 175



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 176  AELQQDKLLLQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSK 235

Query: 1174 YFNRIAKDLLSGST 1187
            +FN+     +SG T
Sbjct: 236  HFNQAPIIEVSGRT 249


>gi|325094232|gb|EGC47542.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus H88]
          Length = 1226

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/434 (35%), Positives = 238/434 (54%), Gaps = 22/434 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E+  D  L  Y V++LDE HER +  D L G++K  +    ++KII+ SAT++ + F  Y
Sbjct: 666  EILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTIQRRPDLKIIVTSATLDADKFSEY 725

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            FN +  I  +PGR YP+++ Y    E     S+ LD    + ++ I    +     GD+L
Sbjct: 726  FN-MCPIFSIPGRTYPVEIMYSREPE-----SDYLDAA-LVTVMQI----HLTEPAGDIL 774

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   K+ G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 775  LFLTGQEEIDTACEILYE-RMKALGPSVPELIILPVYSALPSEMQSRIFEPAPPGSRKVV 833

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETSITID I +VVD G VK+ +YD    M +L    IS+A A+QR GRAGRTGP
Sbjct: 834  IATNIAETSITIDQIYYVVDPGFVKQNAYDPKLGMDSLVVTPISQAQAKQRSGRAGRTGP 893

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP   + +
Sbjct: 894  GKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLT 953

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L    A+D +  +T LGR ++D P++  L K+L+        D +LS+ A+LSV S
Sbjct: 954  ALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVEMGCSDEMLSIVAMLSVHS 1013

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +    HGD LT+LN Y  W    K+   S  WC    I+ ++ 
Sbjct: 1014 IFYRPKEKQQQADQKKAKFHDPHGDHLTLLNVYNGW----KNSRFSSPWCFENFIQARQM 1069

Query: 724  YEVTKLRSQFKQVL 737
              V  +R Q   ++
Sbjct: 1070 RRVQDVREQLVTIM 1083



 Score =  106 bits (265), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 87/135 (64%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EWK + ++     Q     T M +++ + SLPV ++++++++ V + +++I+ GDTG GK
Sbjct: 535 EWKRVTQSK---DQSYGKRTNMTMKQQRESLPVFKFRKQLLEAVTENQLLIVVGDTGSGK 591

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQ+ QYL + GF     I CTQPRR+A +S++KRV+ E   +    VGY IRFE     
Sbjct: 592 TTQLTQYLAEGGFANNGIIGCTQPRRVAAVSVAKRVSEEVGCRLGAEVGYTIRFEDCTSP 651

Query: 125 KTKIVFITEGLLLRQ 139
           +TKI ++T+G+L R+
Sbjct: 652 ETKIKYMTDGILQRE 666



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 1/126 (0%)

Query: 808  SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
             RTGPG C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP 
Sbjct: 889  GRTGPGKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPT 948

Query: 867  ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
              + +++  L    A+D +  +T LGR ++D P++  L K+L+        D ML +   
Sbjct: 949  NTMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVEMGCSDEMLSIVAM 1008

Query: 927  LNFGAI 932
            L+  +I
Sbjct: 1009 LSVHSI 1014



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q ++  D  L  Y V++LDE HER +  D L G++K  +    ++KII+ SAT++ + F 
Sbjct: 664  QREILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTIQRRPDLKIIVTSATLDADKFS 723

Query: 1173 TYFN 1176
             YFN
Sbjct: 724  EYFN 727


>gi|70997647|ref|XP_753563.1| RNA helicase-like splicing factor (HRH1) [Aspergillus fumigatus
            Af293]
 gi|66851199|gb|EAL91525.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
            fumigatus Af293]
 gi|159126706|gb|EDP51822.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
            fumigatus A1163]
          Length = 1230

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/430 (36%), Positives = 236/430 (54%), Gaps = 22/430 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            EV  D  L  Y V++LDE HER +  D L G++K  +    ++++I+ SAT++ E F  Y
Sbjct: 670  EVLLDPDLKRYSVIMLDEAHERTIATDVLFGLLKKTIKRRPDLRLIVTSATLDAEKFSEY 729

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            FN+   I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 730  FNKCP-IFSIPGRTYPVEIMYSKEPEPDY-----LDAA-LITVMQIHLTEPP----GDIL 778

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   K+ G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 779  LFLTGQEEIDTACEILYE-RMKALGKGVPELIILPVYSALPSEMQSRIFEPAPPGGRKVV 837

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETSITID I +V+D G VK+ +YD    M +L    IS+A A+QR GRAGRTGP
Sbjct: 838  IATNIAETSITIDNIYYVIDPGFVKQNAYDPKLGMDSLVVTPISQAQAKQRAGRAGRTGP 897

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP   + +
Sbjct: 898  GKCYRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLT 957

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L    A+D +  +T LGR ++D P++  L K+L+        + +LS+ A+LS+QS
Sbjct: 958  ALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVDMGCSEEMLSIVAMLSIQS 1017

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +    HGD LT+LN Y  W    K+   +  WC    I+ ++ 
Sbjct: 1018 VFYRPKEKQQQADQKKAKFHDPHGDHLTLLNVYNGW----KNSKFNNAWCYENFIQARQI 1073

Query: 724  YEVTKLRSQF 733
                 +R Q 
Sbjct: 1074 RRAQDVRQQL 1083



 Score =  113 bits (282), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 86/135 (63%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EWK   R  +   Q     T M I++ + SLPV +++Q+++D V   +++I+ GDTG GK
Sbjct: 539 EWK---RVTMGKNQSFGKRTNMSIKQQRESLPVFKFRQQLLDAVRDNQLLIVVGDTGSGK 595

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQ+ QYL +AG+     I CTQPRR+A +S++KRVA E   +    VGY IRFE     
Sbjct: 596 TTQVTQYLAEAGYANNGMIGCTQPRRVAAMSVAKRVAEEVGCRLGAEVGYTIRFEDCTSP 655

Query: 125 KTKIVFITEGLLLRQ 139
           +TKI ++T+G+L R+
Sbjct: 656 ETKIKYMTDGMLQRE 670



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG CYRLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP 
Sbjct: 893 GRTGPGKCYRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPT 952

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
             + +++  L    A+D +  +T LGR ++D P++  L K+L+
Sbjct: 953 NTMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLI 995



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q +V  D  L  Y V++LDE HER +  D L G++K  +    ++++I+ SAT++ E F 
Sbjct: 668  QREVLLDPDLKRYSVIMLDEAHERTIATDVLFGLLKKTIKRRPDLRLIVTSATLDAEKFS 727

Query: 1173 TYFNRIAKDLLSGST 1187
             YFN+     + G T
Sbjct: 728  EYFNKCPIFSIPGRT 742


>gi|312282163|dbj|BAJ33947.1| unnamed protein product [Thellungiella halophila]
          Length = 1255

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 153/450 (34%), Positives = 247/450 (54%), Gaps = 24/450 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D+ L  Y V+V+DE HER L+ D L G++K ++    + K+I+ SAT+N + F  +
Sbjct: 662  ETLKDSDLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSNF 721

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F  +  I  +PGR +P+ + Y       ++  E        + ++I     P    GD+L
Sbjct: 722  FGSVP-IFNIPGRTFPVNILYS------KSPCEDYVEAAVKQAMTIHIASPP----GDIL 770

Query: 430  IFMSGISEISSIVRAAQEYNEK--------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLR 481
            IFM+G  EI +   + +E  E+            ++LP++S L  + Q ++F    +G R
Sbjct: 771  IFMTGQDEIEAACFSLKERMEQLIASSSREITNLLILPIYSQLPADLQAKIFQKPEDGAR 830

Query: 482  KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
            KCIV+TNIAETS+T+DGI +V+DSG  K   ++    M  LQ F IS+A+++QR GRAGR
Sbjct: 831  KCIVATNIAETSLTVDGIYYVIDSGYGKMKVFNPRMGMDALQVFPISRAASDQRAGRAGR 890

Query: 542  TGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 600
            TGPG CYRLY+E  Y + +     PEI+R ++ +++L L  + + ++  F F++ PP EN
Sbjct: 891  TGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQEN 950

Query: 601  IESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            I +S+  L   GA+ +   +T LG  + + P+D PL KML+ G     I+ VL++ ++LS
Sbjct: 951  ILNSMYQLWVLGALSNVGGLTDLGWKMVEFPLDPPLAKMLLMGERLDCINEVLTIVSMLS 1010

Query: 661  VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEE 720
            V S F     R  + + AR++      D LT+LN Y++W    K+      WC    ++ 
Sbjct: 1011 VPSVFFRPKERAEESDAAREKFFVPESDHLTLLNVYQQW----KEHDYRGDWCNDHYLQV 1066

Query: 721  QRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
            +   +  ++RSQ   +L    +     GPD
Sbjct: 1067 KGLRKAREVRSQLLDILKQLKIPLKSCGPD 1096



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 83/139 (59%), Gaps = 16/139 (11%)

Query: 17  LDFKQKEKFSTLMK-------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDT 63
           +DFK + KF+  MK             + E +  LP+   + E++  V + +V+++ G+T
Sbjct: 524 VDFKGEAKFAQHMKKGEAVSDFAMSKTLAEQRQYLPIFSVRDELLQVVRENQVIVVVGET 583

Query: 64  GCGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           G GK+TQ+ QYL + G+     + CTQPRR+A +S++KRV+ E  ++  + VGY IRFE 
Sbjct: 584 GSGKTTQLTQYLHEDGYTINGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFED 643

Query: 121 HRREKTKIVFITEGLLLRQ 139
                T I ++T+G+LLR+
Sbjct: 644 VTGPNTVIKYMTDGVLLRE 662



 Score = 80.1 bits (196), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y + +     PEI+R ++ +++L L  + + ++  F F++ PP E
Sbjct: 890  RTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQE 949

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            NI +S+  L   GA+ +   +T LG  + + P+D PL KML+ G     I+ +L +
Sbjct: 950  NILNSMYQLWVLGALSNVGGLTDLGWKMVEFPLDPPLAKMLLMGERLDCINEVLTI 1005



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D+ L  Y V+V+DE HER L+ D L G++K ++    + K+I+ SAT+N + F  +F  +
Sbjct: 666  DSDLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSNFFGSV 725


>gi|291299583|ref|YP_003510861.1| ATP-dependent helicase HrpA [Stackebrandtia nassauensis DSM 44728]
 gi|290568803|gb|ADD41768.1| ATP-dependent helicase HrpA [Stackebrandtia nassauensis DSM 44728]
          Length = 1318

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 166/448 (37%), Positives = 240/448 (53%), Gaps = 22/448 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 195 AEIQHDRFLRRYDTLIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDPERFSK 254

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A I++V GR YP+++ Y P+V  D T  E  D    I  +    ++      GD+
Sbjct: 255 HFGD-APIVEVSGRTYPVEVRYRPLV--DDTDEEADDVRDQIEAIVDASRELMAEGPGDI 311

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG  EI     A  +  EK +   +LPL++ LS  EQ RVF       R+ +++TN
Sbjct: 312 LVFLSGEREIRDTAEALSK--EKFRHTEILPLYARLSSAEQHRVFQR--HTGRRIVLATN 367

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  GVC 
Sbjct: 368 VAETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIEPISQASANQRKGRCGRTSDGVCI 427

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE  +    E++  EI R ++ S++L +   GLG + +FPF++ P   NI   V  L
Sbjct: 428 RLYSEADFEARPEFTDAEILRTNLASVILQMTAAGLGKIEEFPFIDPPDRRNIRDGVLLL 487

Query: 609 TQHGAIDS-----KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
           T+ GAID      ++R+T  GR LS LPVD  LG+M++       +  V+ +AA LS+Q 
Sbjct: 488 TELGAIDDTVSDPRKRLTKRGRQLSQLPVDPRLGRMVLQAHQDGCLHEVMVIAAGLSIQD 547

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKD--RVRS----KKWCKRRG 717
           P      R  D + A     S   DP +   AY       KD  + RS    ++ CK   
Sbjct: 548 PRE----RPADNQQAADAKHSRFADPTSDFLAYLNLWNYLKDEQKARSSSAFRRMCKSEF 603

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITD 745
           +   R  E   +  Q +Q L + GL  +
Sbjct: 604 LHFMRIREWQDIYGQLRQTLKNLGLTMN 631



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 5/107 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  GVC RLYSE  +    E++  EI R ++ S++L +   GLG + +FPF++ P   
Sbjct: 419 GRTSDGVCIRLYSEADFEARPEFTDAEILRTNLASVILQMTAAGLGKIEEFPFIDPPDRR 478

Query: 868 NIESSVRSLTQHGAIDS-----KERVTTLGRFLSDLPVDIPLGKMLV 909
           NI   V  LT+ GAID      ++R+T  GR LS LPVD  LG+M++
Sbjct: 479 NIRDGVLLLTELGAIDDTVSDPRKRLTKRGRQLSQLPVDPRLGRMVL 525



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACI 94
           LPV+Q K +I   +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRRIA  
Sbjct: 92  LPVSQKKDDIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVQGMIGHTQPRRIAAR 151

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           ++++R+A E  S     VG++IRF     E T +  +T+G+LL
Sbjct: 152 TVAERIAEELDSPLGEAVGWKIRFTDKVGENTFVKVMTDGILL 194



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 195  AEIQHDRFLRRYDTLIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDPERFSK 254

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 255  HFGDAPIVEVSGRT 268


>gi|383649628|ref|ZP_09960034.1| ATP-dependent helicase [Streptomyces chartreusis NRRL 12338]
          Length = 1314

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 153/443 (34%), Positives = 247/443 (55%), Gaps = 20/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 181 AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR 240

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRTERG 426
           +F   A I++V GR YP+++ Y P++E D   +++       +I +IID  ++  +  +G
Sbjct: 241 HFGD-APIVEVSGRTYPVEVRYRPLLEEDGDDADR------DQITAIIDAVEELQKEGQG 293

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+L+F+SG  EI     A  + N +     +LPL++ LS  EQ RVF   P   R+ +++
Sbjct: 294 DILVFLSGEREIRDTADALTKKNYRFTE--ILPLYARLSHAEQHRVFQ--PHTGRRIVLA 349

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GRT  G+
Sbjct: 350 TNVAETSLTVPGIKYVIDPGFARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGI 409

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSE+ ++   E++  EI R ++ S++L +   GLGD+ KFPF++ P   NI   V+
Sbjct: 410 CIRLYSEDDFNARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQ 469

Query: 607 SLTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            L + GA+     D ++R+T  GR L+ LPVD  L +M++       +  V+ +AA LS+
Sbjct: 470 LLQELGALDPAQKDPRKRLTDTGRKLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSI 529

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P    A +    +      +    D L  LN ++     +K+R  S  ++ CK+  + 
Sbjct: 530 QDPRERPADKQTQADQQHARFKDETSDFLAYLNLWRYIREQQKERGSSSFRRMCKQEYLN 589

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + SQ + V    G+
Sbjct: 590 FLRIREWQDIYSQLRTVAKQMGI 612



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSE+ ++   E++  EI R ++ S++L +   GLGD+ KFPF++ P   
Sbjct: 403 GRTSDGICIRLYSEDDFNARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHR 462

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI   V+ L + GA+     D ++R+T  GR L+ LPVD  L +M++       +  +++
Sbjct: 463 NIRDGVQLLQELGALDPAQKDPRKRLTDTGRKLAQLPVDPRLARMVLEADKNGCVREVMV 522

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 523 IAAALSIQ--DPRER 535



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
            LPV+Q K EI D +   +VVI+AG+TG GK+TQIP+  ++ G      I  TQPRRIA 
Sbjct: 76  QLPVSQKKDEIADAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGMIGHTQPRRIAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLL 137
            ++++RVA E  +     VG+++RF ++   + T +  +T+G+LL
Sbjct: 136 RTVAERVAEELDTPLGEAVGWKVRFTDQVDPDATFVKLMTDGILL 180



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 181  AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR 240

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 241  HFGDAPIVEVSGRT 254


>gi|255082257|ref|XP_002508347.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226523623|gb|ACO69605.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 1360

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 151/429 (35%), Positives = 246/429 (57%), Gaps = 24/429 (5%)

Query: 317  LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
            L +Y  +++DE HER LH D L G++K ++    + ++I+ SAT+N E F  +F  +  I
Sbjct: 741  LDTYSCIIMDEAHERSLHTDVLFGILKKVVARRRDFRLIVTSATLNSEKFSNFFGSVP-I 799

Query: 377  IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
              +PGR +P++  Y       +T  E    G   + L+I    YP    GD+LIFM+G  
Sbjct: 800  FNIPGRTFPVETLY------SKTPVEDYVEGAVKQALAI-HIAYPP---GDILIFMTGQE 849

Query: 437  EISSIVRAAQEYNEK------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490
            EI ++  A +E  E+           VLP++S L  + Q ++F  AP G+RKC+VSTNIA
Sbjct: 850  EIETVAYALEERLEQLTKVGTCPPLSVLPIYSQLPSDLQAKIFQEAPGGIRKCVVSTNIA 909

Query: 491  ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRL 550
            ETS+T+DG+ +VVD+G  K   Y+    M+ LQ F  S+A+  QRKGRAGRTGPG CYRL
Sbjct: 910  ETSLTLDGVMYVVDTGYCKLSVYNPRMGMNALQIFPCSQAAVNQRKGRAGRTGPGTCYRL 969

Query: 551  YSEE--QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
            Y+E   ++ +LA  + PEI+R ++ +++L L  + + ++  F F++ PP +NI +S+  L
Sbjct: 970  YTEMAFKHEMLA-MTVPEIQRTNLGNVVLLLKSLNVENLLDFDFMDPPPQDNILNSMYQL 1028

Query: 609  TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
               GA+D+   +T +G  + + PVD PL +ML+        + +L++ A+LSV   +   
Sbjct: 1029 WILGALDNTGGLTRMGAKMVEFPVDPPLAQMLLKAEELKCSNEILTVIAMLSVPPIWFRP 1088

Query: 669  AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTK 728
              R+ + + AR++      D LT+LN Y++W    K+      WC R  I+ +   +  +
Sbjct: 1089 KDREEESDAAREKFFVPESDHLTLLNVYQQW----KNNGYRTDWCNRHYIQGKGLKKGRE 1144

Query: 729  LRSQFKQVL 737
            +R+Q   ++
Sbjct: 1145 VRAQLLDIM 1153



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 17/140 (12%)

Query: 17  LDFKQKEKFSTLMK--------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGD 62
           LDF++  KF   MK              ++E +  LPV   +++++  + +  +V++ G+
Sbjct: 595 LDFRKGAKFGDHMKDKTVARSEFAKEKTMKEQREFLPVYGCREDLMHVIRENNIVVVVGE 654

Query: 63  TGCGKSTQIPQYLVQAG---FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE 119
           TG GK+TQ+ QY+ + G   F  I CTQPRR+A +S++KRV+ E   +  + VGY IRFE
Sbjct: 655 TGSGKTTQMTQYMHEEGYSTFGMIGCTQPRRVAAMSVAKRVSEEMGCELGSKVGYAIRFE 714

Query: 120 KHRREKTKIVFITEGLLLRQ 139
                 T I ++T+G+LLR+
Sbjct: 715 DCTGPDTIIKYMTDGVLLRE 734



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 808  SRTGPGVCYRLYSEE--QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 865
             RTGPG CYRLY+E   ++ +LA  + PEI+R ++ +++L L  + + ++  F F++ PP
Sbjct: 959  GRTGPGTCYRLYTEMAFKHEMLA-MTVPEIQRTNLGNVVLLLKSLNVENLLDFDFMDPPP 1017

Query: 866  AENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
             +NI +S+  L   GA+D+   +T +G  + + PVD PL +ML+
Sbjct: 1018 QDNILNSMYQLWILGALDNTGGLTRMGAKMVEFPVDPPLAQMLL 1061



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            L +Y  +++DE HER LH D L G++K ++    + ++I+ SAT+N E F  +F  +
Sbjct: 741  LDTYSCIIMDEAHERSLHTDVLFGILKKVVARRRDFRLIVTSATLNSEKFSNFFGSV 797


>gi|256391409|ref|YP_003112973.1| ATP-dependent helicase HrpA [Catenulispora acidiphila DSM 44928]
 gi|256357635|gb|ACU71132.1| ATP-dependent helicase HrpA [Catenulispora acidiphila DSM 44928]
          Length = 1310

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 157/442 (35%), Positives = 247/442 (55%), Gaps = 21/442 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  LS YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 181 AEIQQDRTLSRYDTIIIDEAHERSLNIDFLLGYLKNLLPRRPDLKLIITSATIDPERFAR 240

Query: 369 YF----NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDK--KYPR 422
           +F       A I++V GR YP+++ Y P++ LD  +++  D     ++ +I D   +  R
Sbjct: 241 HFADRDGNDAPIVEVSGRTYPVEVRYRPLL-LDDPEADG-DAADRDQVQAISDAVDELSR 298

Query: 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRK 482
              GD+L+F+SG  EI     A ++ N ++    ++PL++ LS  EQ +VF   P   R+
Sbjct: 299 EGHGDILVFLSGEREIRDTADALKKRNLRTTE--IVPLYARLSTAEQHKVFE--PHVGRR 354

Query: 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542
            +++TN+AETS+T+ GIR+V+D G  +   Y    K+  L    +S+ASA QRKGR GRT
Sbjct: 355 VVLATNVAETSLTVPGIRYVIDPGTARISRYSNRTKVQRLPIEPVSQASANQRKGRCGRT 414

Query: 543 GPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
             G+C RLY+E+ +    E++ PE+ R S+ S++L +  +GLGDV  FPFL+ P A NI 
Sbjct: 415 SDGICIRLYAEDDFLSRPEFTEPEVLRTSLASVILQMSALGLGDVAAFPFLDPPDARNIR 474

Query: 603 SSVRSLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAA 657
             V  L + GA+D +E     R+T +GR L+ LPVD  LG+M++       +  +L +AA
Sbjct: 475 DGVNLLHELGALDPEEQDPRKRLTPVGRKLAQLPVDPKLGRMVLEADRNGALKEILIIAA 534

Query: 658 VLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCK 714
            LS+Q P    A +           +    D L  L  + +++  ++  + S   +K CK
Sbjct: 535 ALSIQDPRERPADKQQAAAEKHSRFKEQGSDFLAWLKLW-DYIKEQQKELSSNQFRKLCK 593

Query: 715 RRGIEEQRFYEVTKLRSQFKQV 736
              +   R  E   + SQ KQ+
Sbjct: 594 AEFLHYLRIREWQDVHSQLKQI 615



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLY+E+ +    E++ PE+ R S+ S++L +  +GLGDV  FPFL+ P A 
Sbjct: 412 GRTSDGICIRLYAEDDFLSRPEFTEPEVLRTSLASVILQMSALGLGDVAAFPFLDPPDAR 471

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI   V  L + GA+D +E     R+T +GR L+ LPVD  LG+M++       +  +L+
Sbjct: 472 NIRDGVNLLHELGALDPEEQDPRKRLTPVGRKLAQLPVDPKLGRMVLEADRNGALKEILI 531

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 532 IAAALSIQ--DPRER 544



 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 73/121 (60%), Gaps = 4/121 (3%)

Query: 20  KQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG 79
           + + + +++ KI   +N LPV+  K +I   +   +VV+IAG+TG GK+TQIP+  ++ G
Sbjct: 61  RAQARRASIPKITYPEN-LPVSARKDDIAAAIRDHQVVVIAGETGSGKTTQIPKICLELG 119

Query: 80  ---FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLL 136
                 I  TQPRR+A  ++++R+A E        VGY++RF  H  + T +  +T+G+L
Sbjct: 120 RGVAGLIGHTQPRRLAARTVAERIAEELGQSLGESVGYKVRFTDHSSDNTLVKLMTDGIL 179

Query: 137 L 137
           L
Sbjct: 180 L 180



 Score = 60.1 bits (144), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 41/62 (66%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  LS YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 181  AEIQQDRTLSRYDTIIIDEAHERSLNIDFLLGYLKNLLPRRPDLKLIITSATIDPERFAR 240

Query: 1174 YF 1175
            +F
Sbjct: 241  HF 242


>gi|387875861|ref|YP_006306165.1| ATP-dependent helicase HrpA [Mycobacterium sp. MOTT36Y]
 gi|386789319|gb|AFJ35438.1| ATP-dependent helicase HrpA [Mycobacterium sp. MOTT36Y]
          Length = 1305

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 167/499 (33%), Positives = 252/499 (50%), Gaps = 22/499 (4%)

Query: 278 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337
            Y V   D + +R L      G++        E+  D  L  YD L+LDE HER L+ DF
Sbjct: 146 GYSVRFTDRVSDRTLIKLMTDGIL------LAEIQRDRRLLRYDTLILDEAHERSLNIDF 199

Query: 338 LLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHP--IVE 395
           LLG ++ LL    ++++I+ SATI  + F  +F   A II+V GR YP+++ Y P  +  
Sbjct: 200 LLGYLRELLPRRPDLRVIVTSATIEPQRFAAHFEN-APIIEVSGRTYPVEIRYRPLEVAV 258

Query: 396 LDRTKSEKLDPGPYI-------RILSIID--KKYPRTERGDVLIFMSGISEISSIVRAAQ 446
              +  +  DP   I        I +I+D  ++      GDVL+F+SG  EI     A  
Sbjct: 259 PSASTDDPDDPDHEIVRTETRDEIEAIVDAIRELEAEPPGDVLVFLSGEREIRDTAEALT 318

Query: 447 EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSG 506
                     VLPL++ L   EQ +VF  AP   R+ +++TN+AETS+T+ GIR+V+D G
Sbjct: 319 FLTNGPGHTEVLPLYARLPTAEQQKVF--APHTGRRVVLATNVAETSLTVPGIRYVIDPG 376

Query: 507 KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPE 566
             +   Y    K+  L    IS+ASA QR GR GR  PGVC RLYSE+ ++    Y+ PE
Sbjct: 377 NARISRYSRRLKVQRLPIEPISQASAAQRAGRCGRVAPGVCIRLYSEQDFAARPRYTEPE 436

Query: 567 IRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRF 626
           I R ++ ++LL +  + +GD+ KFPFL+ P   ++   V+ L + GA D +  +T LGR 
Sbjct: 437 ILRTNLAAVLLQMAALQIGDIEKFPFLDPPDRRSVRDGVQLLVELGAFDGQGAITELGRR 496

Query: 627 LSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNH 686
           L+ LPVD  LG+M++       +  +L LAA LS+  P    + R+             H
Sbjct: 497 LARLPVDPRLGRMILQAETEGCVREMLVLAAALSIPDPRERPSDREEAAREKHARFADEH 556

Query: 687 GDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLIT 744
            D ++ LN +      +K    S  ++ C+   +   R  E   L  Q + + GD G++ 
Sbjct: 557 SDFMSYLNLWHYLREQRKSLSGSAFRRMCRSEFLHYLRIREWQDLVGQLRSIAGDLGVVE 616

Query: 745 DIPGPDASLSSRERALRHG 763
           D  G  A  +    AL  G
Sbjct: 617 DTAGEPAGPARVHAALVAG 635



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PGVC RLYSE+ ++    Y+ PEI R ++ ++LL +  + +GD+ KFPFL+ P   
Sbjct: 410 GRVAPGVCIRLYSEQDFAARPRYTEPEILRTNLAAVLLQMAALQIGDIEKFPFLDPPDRR 469

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           ++   V+ L + GA D +  +T LGR L+ LPVD  LG+M++       +  ML+L  AL
Sbjct: 470 SVRDGVQLLVELGAFDGQGAITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAAL 529

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 530 SIP--DPRER 537



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRR 90
           T   LPV+  +QEI D +   +VV+IAG+TG GK+TQ+P+  ++AG      I  TQPRR
Sbjct: 64  TYPDLPVSARRQEIADAIRGNQVVVIAGETGSGKTTQLPKICLEAGRGIRGTIGHTQPRR 123

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  ++++R+A E  S     VGY +RF     ++T I  +T+G+LL
Sbjct: 124 LAARTVAQRIADELASPLGEAVGYSVRFTDRVSDRTLIKLMTDGILL 170



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L+LDE HER L+ DFLLG ++ LL    ++++I+ SATI  + F  
Sbjct: 171  AEIQRDRRLLRYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLRVIVTSATIEPQRFAA 230

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 231  HFENAPIIEVSGRT 244



 Score = 41.6 bits (96), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query: 1023 LDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHH 1082
            + L +  GA D +  +T LGR L+ LPVD  LG+M++       +  ML+L  AL+    
Sbjct: 475  VQLLVELGAFDGQGAITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAALSIPDP 534

Query: 1083 SEEEEEEEAGER 1094
             E   + E   R
Sbjct: 535  RERPSDREEAAR 546


>gi|194754421|ref|XP_001959493.1| GF12026 [Drosophila ananassae]
 gi|190620791|gb|EDV36315.1| GF12026 [Drosophila ananassae]
          Length = 1251

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 160/431 (37%), Positives = 241/431 (55%), Gaps = 31/431 (7%)

Query: 317  LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
            L SY V++LDE HER +H D L G++K  +    E+K+I+ SAT++   F  YF + A I
Sbjct: 706  LKSYSVIMLDEAHERTIHTDVLFGLLKTAVQKRPELKLIVTSATLDAVKFSQYFFK-API 764

Query: 377  IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
              +PGR +P+++ Y    E D      LD    I ++ I  ++ P    GD+L+F++G  
Sbjct: 765  FTIPGRTFPVEVLYTKEPETDY-----LD-ASLITVMQIHLREPP----GDILLFLTGQE 814

Query: 437  EISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAE 491
            EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +++TNIAE
Sbjct: 815  EIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPAGSRKVVIATNIAE 873

Query: 492  TSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLY 551
            TS+TIDGI +VVD G VK+  Y+    M +L    IS+A+A+QR GRAGRTGPG CYRLY
Sbjct: 874  TSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKCYRLY 933

Query: 552  SEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQ 610
            +E  Y   +     PEI+R ++ + +L L  MG+ D+  F F++APP E++  ++  L  
Sbjct: 934  TERAYRDEMLPTPVPEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLVMALEQLHS 993

Query: 611  HGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAF 670
              A+D +  +T LGR +++ P++  L KML+        D +L++ ++LSVQ+ F     
Sbjct: 994  LSALDDEGLLTRLGRRMAEFPLEPNLSKMLIMSVALQCSDEILTIVSMLSVQNVFYRPKD 1053

Query: 671  RDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKL- 729
            +    +  + +     GD LT+L  Y  W    K+   S  WC       + F ++  L 
Sbjct: 1054 KQALADQKKAKFNQAEGDHLTLLAVYNSW----KNNKFSNAWCY------ENFVQIRTLK 1103

Query: 730  RSQ--FKQVLG 738
            RSQ   KQ+LG
Sbjct: 1104 RSQDVRKQLLG 1114



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 87/143 (60%), Gaps = 9/143 (6%)

Query: 2   SPALYEEWKLLLRTYLDFKQKEKFS--TLMKIRETQNSLPVAQYKQEIIDTVLKERVVII 59
           +PA   EWK     ++   +K  F   T + + E + SLP+ + + ++I  V   +++I+
Sbjct: 561 APAEVPEWK----KHVIGGKKSSFGKKTDLTLIEQRQSLPIYKLRDDLIKAVTDNQILIV 616

Query: 60  AGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQI 116
            G+TG GK+TQI QYL + GF    +I CTQPRR+A +S++KRVA E   +    VGY I
Sbjct: 617 IGETGSGKTTQITQYLGECGFTARGKIGCTQPRRVAAMSVAKRVAEEYGCRLGQEVGYTI 676

Query: 117 RFEKHRREKTKIVFITEGLLLRQ 139
           RFE     +T + ++T+G+LLR+
Sbjct: 677 RFEDCTSPETIVKYMTDGMLLRE 699



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +     PEI+R ++ + +L L  MG+ D+  F F++APP E
Sbjct: 923  RTGPGKCYRLYTERAYRDEMLPTPVPEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVE 982

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            ++  ++  L    A+D +  +T LGR +++ P++  L KML+        D +L +
Sbjct: 983  SLVMALEQLHSLSALDDEGLLTRLGRRMAEFPLEPNLSKMLIMSVALQCSDEILTI 1038



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            L SY V++LDE HER +H D L G++K  +    E+K+I+ SAT++   F  YF
Sbjct: 706  LKSYSVIMLDEAHERTIHTDVLFGLLKTAVQKRPELKLIVTSATLDAVKFSQYF 759


>gi|441660986|ref|XP_004093158.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX8
           [Nomascus leucogenys]
          Length = 894

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 238/435 (54%), Gaps = 25/435 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 343 ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 402

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A I  +PGR YP+++ Y    E D   +        I ++ I   + P    GD+L
Sbjct: 403 FYE-APIFTIPGRTYPVEILYTKEPETDYLDAS------LITVMQIHLTEPP----GDIL 451

Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 452 VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 510

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 511 IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 570

Query: 545 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 571 GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 630

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
           ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 631 AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 690

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
            F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 691 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 746

Query: 724 YEVTKLRSQFKQVLG 738
                +R   KQ+LG
Sbjct: 747 RRAQDIR---KQMLG 758



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 81/142 (57%), Gaps = 8/142 (5%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++      R++   
Sbjct: 207 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQV---RRLLXCI 261

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 262 GETGSGKTTQIXQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 321

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 322 FEDCTSPETVIKYMTDGMLLRE 343



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 567 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 626

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 627 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 682



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 347  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 403


>gi|313241926|emb|CBY34129.1| unnamed protein product [Oikopleura dioica]
          Length = 872

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 240/434 (55%), Gaps = 23/434 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  LS Y V++LDE HER +H D + G++K ++     +K+I+ SAT++   F +Y
Sbjct: 318 ECLVDTDLSRYSVIMLDEAHERTIHTDVMFGLLKKVIKRRKNLKVIVTSATLDAVKFSSY 377

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A I  +PGR +P+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 378 FFE-APIFTIPGRTFPVEIMYTKEPETDY-----LD-ASLITVMQIHLSEPP----GDIL 426

Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F++G  EI +    +    ++        I+LP++S L  E Q R+F  AP G RK ++
Sbjct: 427 LFLTGQEEIDTSSEILFERMKQLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKIVI 486

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGPG
Sbjct: 487 ATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLLVTPISQAQAKQRAGRAGRTGPG 546

Query: 546 VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
             YRLY+E  Y   + + + PEI+R ++ + +LSL  MG+ D+  F F++ PP E + ++
Sbjct: 547 KAYRLYTERAYRDEMLQTNVPEIQRTNMATTVLSLKAMGINDLLAFDFMDPPPMETLITA 606

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           + SL Q GA+D +  +T LGR +++ P+D  L KML+        D +L++ ++L+VQ+ 
Sbjct: 607 MESLYQLGALDDEGLLTRLGRRMAEFPLDPMLCKMLIMSVQLGCSDEILTIVSMLNVQNV 666

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +   
Sbjct: 667 FYRPKEKQQVADQRKSKFHQPEGDHLTLLTVYNAW----KNNKFSNAWCFENFIQARTLR 722

Query: 725 EVTKLRSQFKQVLG 738
               +R   KQ+LG
Sbjct: 723 RSQDVR---KQMLG 733



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---I 83
           T + I+E +  LP+ + + +++  V   +++I+ G+TG GK+TQI QYL ++G      I
Sbjct: 203 TNLTIKEQREGLPIFKLRDQLLQAVEDNQILIVIGETGSGKTTQITQYLAESGLSTLGII 262

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A +S++KRVA E   Q    VGY IRFE     +TKI ++T+G+LLR+
Sbjct: 263 GCTQPRRVAAMSVAKRVAEECGVQLGQEVGYSIRFEDCTSPETKIKYMTDGMLLRE 318



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 73/121 (60%), Gaps = 1/121 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG  YRLY+E  Y   + + + PEI+R ++ + +LSL  MG+ D+  F F++ PP E
Sbjct: 542 RTGPGKAYRLYTERAYRDEMLQTNVPEIQRTNMATTVLSLKAMGINDLLAFDFMDPPPME 601

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            + +++ SL Q GA+D +  +T LGR +++ P+D  L KML+        D +L +   L
Sbjct: 602 TLITAMESLYQLGALDDEGLLTRLGRRMAEFPLDPMLCKMLIMSVQLGCSDEILTIVSML 661

Query: 928 N 928
           N
Sbjct: 662 N 662



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 37/57 (64%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  LS Y V++LDE HER +H D + G++K ++     +K+I+ SAT++   F +YF
Sbjct: 322  DTDLSRYSVIMLDEAHERTIHTDVMFGLLKKVIKRRKNLKVIVTSATLDAVKFSSYF 378


>gi|452822191|gb|EME29213.1| pre-mRNA-splicing factor ATP-dependent RNA helicase [Galdieria
           sulphuraria]
          Length = 1040

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 147/433 (33%), Positives = 243/433 (56%), Gaps = 30/433 (6%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L+SY V+++DE HER LH D L+ ++K L     ++K+I+ SAT+N E F  YF+  A +
Sbjct: 508 LASYSVIIIDEAHERSLHTDILMALVKDLAREREDIKVIISSATLNAEKFSVYFDD-APV 566

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
             +PGR +P+ L Y    E D   +        I +L I    +     GD+L+F++G  
Sbjct: 567 FNIPGRRFPVDLYYTKAPEADYVDA------ACITVLQI----HATQPAGDILVFLTGQD 616

Query: 437 EISSIVRAAQEYNEKSQGW-------IVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
           EI S   A +  NE+++G        I+ P++STL  E+Q ++F   P G RK +++TNI
Sbjct: 617 EIES---AVEMLNERTRGLGSRLGELIICPIYSTLPSEQQAKIFDPTPPGARKVVLATNI 673

Query: 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYR 549
           AETS+TIDG+ +V+D G  K+  YD  A + +L    IS+ASA QR GRAGRT PG C+R
Sbjct: 674 AETSVTIDGVVYVIDPGFCKQKRYDPRAGIESLLVVPISRASAIQRAGRAGRTQPGKCFR 733

Query: 550 LYSE-EQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           LY++   Y+ +++ ++PEI R ++  ++LSL  +G+ D+  F FL+ PP + +  S+  L
Sbjct: 734 LYTKWSYYNEMSDETSPEILRTNLSQVVLSLKSLGIDDLIHFDFLDKPPTDALIRSLEQL 793

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF--- 665
              GA++ +  +T LGR +++LP+D P+ K L+    +   + ++++ A+LSV +     
Sbjct: 794 YALGALNDRGELTKLGRRMAELPLDPPMSKCLIASEKYGCSEEIITICAMLSVNNSIFYR 853

Query: 666 -TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
             ++A      + A        GD L +L  Y +W+    D   S +WC    ++ +   
Sbjct: 854 PKDKAVMADSAKAAFHRAYGGVGDHLGLLACYCQWM----DTGYSTQWCYENFVQVRSMK 909

Query: 725 EVTKLRSQFKQVL 737
           +   +R Q   +L
Sbjct: 910 KARDIRDQLDAML 922



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 78/121 (64%), Gaps = 3/121 (2%)

Query: 22  KEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ 81
           K   S    IR+   SLP+  ++ E++  +   +V+++ G+TG GK+TQ+PQYL  AG+ 
Sbjct: 381 KSSLSKPKDIRKECESLPIYPFRDELLQAIEAYKVLVVVGETGSGKTTQLPQYLHDAGYT 440

Query: 82  R---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLR 138
           +   I CTQPRR+A +S++ RV+ E   +  + VGY IRFE    EKT I ++T+G+LLR
Sbjct: 441 KRGKIGCTQPRRVAAMSVADRVSKEMKVKLGSEVGYSIRFEDCTCEKTVIKYMTDGMLLR 500

Query: 139 Q 139
           +
Sbjct: 501 E 501



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 68/107 (63%), Gaps = 1/107 (0%)

Query: 809 RTGPGVCYRLYSE-EQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RT PG C+RLY++   Y+ +++ ++PEI R ++  ++LSL  +G+ D+  F FL+ PP +
Sbjct: 725 RTQPGKCFRLYTKWSYYNEMSDETSPEILRTNLSQVVLSLKSLGIDDLIHFDFLDKPPTD 784

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMF 914
            +  S+  L   GA++ +  +T LGR +++LP+D P+ K L+    +
Sbjct: 785 ALIRSLEQLYALGALNDRGELTKLGRRMAELPLDPPMSKCLIASEKY 831



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 38/55 (69%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            L+SY V+++DE HER LH D L+ ++K L     ++K+I+ SAT+N E F  YF+
Sbjct: 508  LASYSVIIIDEAHERSLHTDILMALVKDLAREREDIKVIISSATLNAEKFSVYFD 562


>gi|227355455|ref|ZP_03839851.1| ATP-dependent helicase [Proteus mirabilis ATCC 29906]
 gi|227164442|gb|EEI49326.1| ATP-dependent helicase [Proteus mirabilis ATCC 29906]
          Length = 1292

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 251/446 (56%), Gaps = 26/446 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 170 AELLQDKLLLQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSK 229

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPI----VELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424
           +FN+ A II+V GR YP+++ Y PI    ++ D+  +E         I+  ID+   R  
Sbjct: 230 HFNQ-APIIEVSGRTYPVEVRYRPIGGDALDSDKDMTEG--------IIDAIDE-LSRES 279

Query: 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            GD+LIFMSG  EI     A  +   +     VLPL + LS  EQ+R+F   P   R+ I
Sbjct: 280 AGDILIFMSGEREIRDTAEALNKLQLRHTE--VLPLFARLSNSEQNRIFQ--PHTGRRII 335

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TN+AETS+T+ GI++V+D+G  +   Y    K+  L    IS+ASA+QRKGR GR   
Sbjct: 336 LATNVAETSLTVPGIKYVIDTGYARISRYSYRTKVQRLPIEPISQASADQRKGRCGRVSD 395

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G+C RLYSE+ +   A+++ PEI R ++ S++L +  +GLGD+  FPF++AP   NI+  
Sbjct: 396 GICIRLYSEDDFISRAQFTDPEILRTNLASVILQMTSIGLGDISGFPFVQAPDKRNIQDG 455

Query: 605 VRSLTQHGAI----DSKE--RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
           VR L + GA+    D+K   R+T +G+ L+ LP+D  L +M++    +  +  ++ + + 
Sbjct: 456 VRLLEELGALQEGTDNKGAYRLTPMGKQLAQLPIDPRLARMVLEARKYGAVRELMVITSA 515

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRR 716
           LS+Q P      +    +   +  +    D L++LN +      +K+   S  +K C++ 
Sbjct: 516 LSIQDPRERPMDKQQASDEKHRRFQDKDSDFLSLLNLWDYLKTQQKELSHSQFRKHCRQE 575

Query: 717 GIEEQRFYEVTKLRSQFKQVLGDSGL 742
            +   R  E   + +Q +QV+ + G 
Sbjct: 576 FLNFMRVREWQDVYTQLRQVVKELGF 601



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 82/136 (60%), Gaps = 8/136 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +   A+++ PEI R ++ S++L +  +GLGD+  FPF++AP   
Sbjct: 391 GRVSDGICIRLYSEDDFISRAQFTDPEILRTNLASVILQMTSIGLGDISGFPFVQAPDKR 450

Query: 868 NIESSVRSLTQHGAI----DSKE--RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           NI+  VR L + GA+    D+K   R+T +G+ L+ LP+D  L +M++    +  +  ++
Sbjct: 451 NIQDGVRLLEELGALQEGTDNKGAYRLTPMGKQLAQLPIDPRLARMVLEARKYGAVRELM 510

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 511 VITSALSIQ--DPRER 524



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 68/104 (65%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIAC 93
           +LPV+Q K+ I + +   +VVIIAG+TG GK+TQIP+  ++ G      I  TQPRR+A 
Sbjct: 66  NLPVSQKKEAIYNAIKDNQVVIIAGETGSGKTTQIPKICLELGRGVKGYIGHTQPRRLAA 125

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S+++R+A+E  +     VGY++RF  H  + T +  +T+G+LL
Sbjct: 126 RSVAERIAHELNTTLGESVGYKVRFSDHVGDNTLVKLMTDGILL 169



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  L  YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  +FN+ 
Sbjct: 175  DKLLLQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSKHFNQA 234

Query: 1179 AKDLLSGST 1187
                +SG T
Sbjct: 235  PIIEVSGRT 243


>gi|313230404|emb|CBY18619.1| unnamed protein product [Oikopleura dioica]
          Length = 1187

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 240/434 (55%), Gaps = 23/434 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  LS Y V++LDE HER +H D + G++K ++     +K+I+ SAT++   F +Y
Sbjct: 633  ECLVDTDLSRYSVIMLDEAHERTIHTDVMFGLLKKVIKRRKNLKVIVTSATLDAVKFSSY 692

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR +P+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 693  FFE-APIFTIPGRTFPVEIMYTKEPETDY-----LD-ASLITVMQIHLSEPP----GDIL 741

Query: 430  IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
            +F++G  EI +    +    ++        I+LP++S L  E Q R+F  AP G RK ++
Sbjct: 742  LFLTGQEEIDTSSEILFERMKQLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKIVI 801

Query: 486  STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
            +TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGPG
Sbjct: 802  ATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLLVTPISQAQAKQRAGRAGRTGPG 861

Query: 546  VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
              YRLY+E  Y   + + + PEI+R ++ + +LSL  MG+ D+  F F++ PP E + ++
Sbjct: 862  KAYRLYTERAYRDEMLQTNVPEIQRTNMATTVLSLKAMGINDLLAFDFMDPPPMETLITA 921

Query: 605  VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            + SL Q GA+D +  +T LGR +++ P+D  L KML+        D +L++ ++L+VQ+ 
Sbjct: 922  MESLYQLGALDDEGLLTRLGRRMAEFPLDPMLCKMLIMSVQLGCSDEILTIVSMLNVQNV 981

Query: 665  FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
            F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +   
Sbjct: 982  FYRPKEKQQVADQRKSKFHQPEGDHLTLLTVYNAW----KNNKFSNAWCFENFIQARTLR 1037

Query: 725  EVTKLRSQFKQVLG 738
                +R   KQ+LG
Sbjct: 1038 RSQDVR---KQMLG 1048



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---I 83
           T + I+E +  LP+ + + +++  V   +++I+ G+TG GK+TQI QYL ++G      I
Sbjct: 518 TNLTIKEQREGLPIFKLRDQLLQAVEDNQILIVIGETGSGKTTQITQYLAESGLSTLGII 577

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A +S++KRVA E   Q    VGY IRFE     +TKI ++T+G+LLR+
Sbjct: 578 GCTQPRRVAAMSVAKRVAEECGVQLGQEVGYSIRFEDCTSPETKIKYMTDGMLLRE 633



 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 73/121 (60%), Gaps = 1/121 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG  YRLY+E  Y   + + + PEI+R ++ + +LSL  MG+ D+  F F++ PP E
Sbjct: 857 RTGPGKAYRLYTERAYRDEMLQTNVPEIQRTNMATTVLSLKAMGINDLLAFDFMDPPPME 916

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            + +++ SL Q GA+D +  +T LGR +++ P+D  L KML+        D +L +   L
Sbjct: 917 TLITAMESLYQLGALDDEGLLTRLGRRMAEFPLDPMLCKMLIMSVQLGCSDEILTIVSML 976

Query: 928 N 928
           N
Sbjct: 977 N 977



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 37/57 (64%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  LS Y V++LDE HER +H D + G++K ++     +K+I+ SAT++   F +YF
Sbjct: 637  DTDLSRYSVIMLDEAHERTIHTDVMFGLLKKVIKRRKNLKVIVTSATLDAVKFSSYF 693


>gi|335297587|ref|XP_003358070.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 2 [Sus scrofa]
          Length = 665

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 114 ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 173

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 174 FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 222

Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 223 VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 281

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 282 IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 341

Query: 545 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 342 GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 401

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
           ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 402 AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 461

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
            F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 462 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 517

Query: 724 YEVTKLRSQFKQVLG 738
                +R   KQ+LG
Sbjct: 518 RRAQDIR---KQMLG 529



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 75/114 (65%), Gaps = 3/114 (2%)

Query: 29  MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIAC 85
           M I E + SLP+ + K+ I+  V   +++I+ G+TG GK+TQI QYL +AG+    +I C
Sbjct: 1   MSIIEQRESLPIYKLKEHILYAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGC 60

Query: 86  TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           TQPRR+A +S++KRV+ E        VGY IRFE     +T I ++T+G+LLR+
Sbjct: 61  TQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRE 114



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 338 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 397

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVF 910
            + +++  L   GA+D +  +T LGR +++ P++  L KML+ 
Sbjct: 398 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIM 440



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 118  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 174


>gi|74144379|dbj|BAE36043.1| unnamed protein product [Mus musculus]
          Length = 586

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 35  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 94

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 95  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 143

Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 144 VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 202

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 203 IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 262

Query: 545 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 263 GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 322

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
           ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 323 AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 382

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
            F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 383 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 438

Query: 724 YEVTKLRSQFKQVLG 738
                +R   KQ+LG
Sbjct: 439 RRAQDIR---KQMLG 450



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 1/104 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 259 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 318

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
            + +++  L   GA+D +  +T LGR +++ P++  L KML+  
Sbjct: 319 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMS 362



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 39   DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 95


>gi|156081953|ref|XP_001608469.1| RNA helicase [Plasmodium vivax Sal-1]
 gi|148801040|gb|EDL42445.1| RNA helicase, putative [Plasmodium vivax]
          Length = 1218

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 150/429 (34%), Positives = 242/429 (56%), Gaps = 21/429 (4%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E  +D  LS Y  ++LDE HER +  D L  ++K ++    + K+I+ SAT++ E F TY
Sbjct: 663  ETLSDTMLSKYSFIILDEAHERTISTDILFCLLKDVVKRRPDFKLIVTSATLDAEKFSTY 722

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   + I  +PG+++P+++ +    E D  ++        I +L+I   ++P    GD+L
Sbjct: 723  FFN-SPIFTIPGKIFPVEILHSKEPESDYVEA------CLITVLNIHLNEHP----GDIL 771

Query: 430  IFMSGISEISSIVRAAQEYNEKSQGW-----IVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI++      E  +K +       I+LP++S+L  E Q  +F  AP+G RKCI
Sbjct: 772  VFLTGQDEINTACEILHERMKKLESMSPPPLIILPIYSSLPSEMQSVIFDPAPQGCRKCI 831

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAE S+TIDGI FV+D G  K   YD    M +L    ISKA+A+QR GRAGRTGP
Sbjct: 832  LATNIAEASLTIDGIFFVIDPGFCKIRKYDSKRDMDSLVVAPISKANAKQRAGRAGRTGP 891

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E+ Y + +AE S PEI+R+++ S +L L  +G+ D   F F+++P  + +  
Sbjct: 892  GKCYRLYTEDAYKNEMAETSIPEIQRINLGSTVLLLKALGVNDFLHFDFMDSPSVDTLIH 951

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            S+ +L   GA+D    +T LG+ +S+ P++  L K+L+    F+  D V+++ ++LSVQ+
Sbjct: 952  SLENLYYLGALDDNGYLTKLGKKMSNFPMEPNLSKILLTSINFNCADDVVTIVSMLSVQN 1011

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD +T LN Y  W    ++   S  WC    I  +  
Sbjct: 1012 IFYRPQNKALLADKKKNKFLMPQGDLITYLNIYNRW----RENNYSNYWCHENFIHSRAL 1067

Query: 724  YEVTKLRSQ 732
                 +R Q
Sbjct: 1068 KRSQDVRKQ 1076



 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EW+   + YL           M + E +  LP+   K++++  + K  V+I+ G+TG GK
Sbjct: 532 EWR---KNYLHNNISIGVKNPMPVNEQRAKLPIYNLKKDLMKAIAKNNVLIVIGETGSGK 588

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQIPQYL +A +     + CTQPRR+A +S++KRV+ E        VGY IRF+     
Sbjct: 589 TTQIPQYLHEANYTDKGIVGCTQPRRVAAMSIAKRVSEEFGCILGQEVGYSIRFDDCTSN 648

Query: 125 KTKIVFITEGLLLRQ 139
            T I ++T+G+LLR+
Sbjct: 649 DTIIKYLTDGMLLRE 663



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 73/116 (62%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E+ Y + +AE S PEI+R+++ S +L L  +G+ D   F F+++P  +
Sbjct: 888  RTGPGKCYRLYTEDAYKNEMAETSIPEIQRINLGSTVLLLKALGVNDFLHFDFMDSPSVD 947

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             +  S+ +L   GA+D    +T LG+ +S+ P++  L K+L+    F+  D ++ +
Sbjct: 948  TLIHSLENLYYLGALDDNGYLTKLGKKMSNFPMEPNLSKILLTSINFNCADDVVTI 1003



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            +D  LS Y  ++LDE HER +  D L  ++K ++    + K+I+ SAT++ E F TYF
Sbjct: 666  SDTMLSKYSFIILDEAHERTISTDILFCLLKDVVKRRPDFKLIVTSATLDAEKFSTYF 723


>gi|443305570|ref|ZP_21035358.1| ATP-dependent helicase HrpA [Mycobacterium sp. H4Y]
 gi|442767134|gb|ELR85128.1| ATP-dependent helicase HrpA [Mycobacterium sp. H4Y]
          Length = 1297

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 167/499 (33%), Positives = 252/499 (50%), Gaps = 22/499 (4%)

Query: 278 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337
            Y V   D + +R L      G++        E+  D  L  YD L+LDE HER L+ DF
Sbjct: 138 GYSVRFTDRVSDRTLIKLMTDGIL------LAEIQRDRRLLRYDTLILDEAHERSLNIDF 191

Query: 338 LLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHP--IVE 395
           LLG ++ LL    ++++I+ SATI  + F  +F   A II+V GR YP+++ Y P  +  
Sbjct: 192 LLGYLRELLPRRPDLRVIVTSATIEPQRFAAHFEN-APIIEVSGRTYPVEIRYRPLEVAV 250

Query: 396 LDRTKSEKLDPGPYI-------RILSIID--KKYPRTERGDVLIFMSGISEISSIVRAAQ 446
              +  +  DP   I        I +I+D  ++      GDVL+F+SG  EI     A  
Sbjct: 251 PSASTDDPDDPDHEIVRTETRDEIEAIVDAIRELEAEPPGDVLVFLSGEREIRDTAEALT 310

Query: 447 EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSG 506
                     VLPL++ L   EQ +VF  AP   R+ +++TN+AETS+T+ GIR+V+D G
Sbjct: 311 FLTNGPGHTEVLPLYARLPTAEQQKVF--APHTGRRVVLATNVAETSLTVPGIRYVIDPG 368

Query: 507 KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPE 566
             +   Y    K+  L    IS+ASA QR GR GR  PGVC RLYSE+ ++    Y+ PE
Sbjct: 369 NARISRYSRRLKVQRLPIEPISQASAAQRAGRCGRVAPGVCIRLYSEQDFAARPRYTEPE 428

Query: 567 IRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRF 626
           I R ++ ++LL +  + +GD+ KFPFL+ P   ++   V+ L + GA D +  +T LGR 
Sbjct: 429 ILRTNLAAVLLQMAALQIGDIEKFPFLDPPDRRSVRDGVQLLVELGAFDGQGAITELGRR 488

Query: 627 LSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNH 686
           L+ LPVD  LG+M++       +  +L LAA LS+  P    + R+             H
Sbjct: 489 LARLPVDPRLGRMILQAETEGCVREMLVLAAALSIPDPRERPSDREEAAREKHARFADEH 548

Query: 687 GDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLIT 744
            D ++ LN +      +K    S  ++ C+   +   R  E   L  Q + + GD G++ 
Sbjct: 549 SDFMSYLNLWHYLREQRKSLSGSAFRRMCRSEFLHYLRIREWQDLVGQLRSIAGDLGVVE 608

Query: 745 DIPGPDASLSSRERALRHG 763
           D  G  A  +    AL  G
Sbjct: 609 DTAGEPAGPARVHAALVAG 627



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PGVC RLYSE+ ++    Y+ PEI R ++ ++LL +  + +GD+ KFPFL+ P   
Sbjct: 402 GRVAPGVCIRLYSEQDFAARPRYTEPEILRTNLAAVLLQMAALQIGDIEKFPFLDPPDRR 461

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           ++   V+ L + GA D +  +T LGR L+ LPVD  LG+M++       +  ML+L  AL
Sbjct: 462 SVRDGVQLLVELGAFDGQGAITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAAL 521

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 522 SIP--DPRER 529



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 34  TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRR 90
           T   LPV+  +QEI D +   +VV+IAG+TG GK+TQ+P+  ++AG      I  TQPRR
Sbjct: 56  TYPDLPVSARRQEIADAIRGNQVVVIAGETGSGKTTQLPKICLEAGRGIRGTIGHTQPRR 115

Query: 91  IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +A  ++++R+A E  S     VGY +RF     ++T I  +T+G+LL
Sbjct: 116 LAARTVAQRIADELASPLGEAVGYSVRFTDRVSDRTLIKLMTDGILL 162



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L+LDE HER L+ DFLLG ++ LL    ++++I+ SATI  + F  
Sbjct: 163  AEIQRDRRLLRYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLRVIVTSATIEPQRFAA 222

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 223  HFENAPIIEVSGRT 236



 Score = 41.6 bits (96), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query: 1023 LDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHH 1082
            + L +  GA D +  +T LGR L+ LPVD  LG+M++       +  ML+L  AL+    
Sbjct: 467  VQLLVELGAFDGQGAITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAALSIPDP 526

Query: 1083 SEEEEEEEAGER 1094
             E   + E   R
Sbjct: 527  RERPSDREEAAR 538


>gi|403306349|ref|XP_003943700.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 2 [Saimiri
            boliviensis boliviensis]
          Length = 1177

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 665  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 724

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 725  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 773

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 774  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 832

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 833  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 892

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 893  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 952

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 953  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1012

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1013 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1068

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1069 RRAQDIR---KQMLG 1080



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 526 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 583

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 584 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 643

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 644 FEDCTSPETVIKYMTDGMLLRE 665



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 889  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 948

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 949  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1004



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 669  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 725


>gi|336451301|ref|ZP_08621739.1| ATP-dependent helicase HrpA [Idiomarina sp. A28L]
 gi|336281672|gb|EGN74944.1| ATP-dependent helicase HrpA [Idiomarina sp. A28L]
          Length = 1246

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 161/464 (34%), Positives = 249/464 (53%), Gaps = 20/464 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  Y  +++DE HER L+ DFLLGV++ L+    ++K+I+ SATI  E F  
Sbjct: 118 AEMQHDRLLQKYSAIIIDEAHERSLNIDFLLGVLRQLIDKRPDLKVIITSATIETERFSK 177

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A +I V GR +P++  Y P+ E D    + +  G      S++++       GD+
Sbjct: 178 HFAD-APVIAVEGRTFPVETRYRPLQEGDDETEQDVIQGICDAASSLVNEGP-----GDI 231

Query: 429 LIFMSGISEISSIVRAAQE-YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           L+F+SG  EI     A  + + E  Q   ++PL++ LS  EQ+R+F   P   R+ +++T
Sbjct: 232 LVFLSGEREIRDTADALNDTFRELPQPIEIVPLYARLSASEQNRIFQ--PHNSRRIVLAT 289

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GIR+V+D G  +   Y    K+  L    IS+ASA QR GR GR GPG+C
Sbjct: 290 NVAETSLTVPGIRYVIDPGSARISRYSYRTKVQRLPIEPISQASANQRAGRCGRVGPGIC 349

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSEE +    E++ PEI R ++ S++L +  + LGD+RKFPFL+ P    I   +R 
Sbjct: 350 VRLYSEEDFLNRPEFTDPEILRTNLASVVLQMATLKLGDIRKFPFLQRPDERFITDGIRL 409

Query: 608 LTQHGAIDSKER-----VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GA+    R     +T++GR +  +PVD  LG+ML+  S    +  +L + A LS+Q
Sbjct: 410 LEELGAMQGAGRKQQPKLTAVGRSIGRMPVDPRLGRMLLAASELGCVRELLVITAALSIQ 469

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIEE 720
            P      +    +   K       D L  LN +     ++K+   +  +K CK+  I  
Sbjct: 470 DPRERPHDKQQKADELHKRFVDKDSDFLGYLNLWNYVQELQKELSGNQFRKRCKQELIHY 529

Query: 721 QRFYEVTKLRSQFKQVLGDSGL-ITDIPGPDASLSSRERALRHG 763
            R  E   L +Q +Q + + G+ I + P   A  SS  RAL  G
Sbjct: 530 LRVREWQDLYTQLRQSVREQGIRINEEP---ADYSSIHRALLTG 570



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R GPG+C RLYSEE +    E++ PEI R ++ S++L +  + LGD+RKFPFL+ P   
Sbjct: 342 GRVGPGICVRLYSEEDFLNRPEFTDPEILRTNLASVVLQMATLKLGDIRKFPFLQRPDER 401

Query: 868 NIESSVRSLTQHGAIDSKER-----VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
            I   +R L + GA+    R     +T +GR +  +PVD  LG+ML+  S    +  +L+
Sbjct: 402 FITDGIRLLEELGAMQGAGRKQQPKLTAVGRSIGRMPVDPRLGRMLLAASELGCVRELLV 461

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 462 ITAALSIQ--DPRER 474



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 64/104 (61%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
            LPV   K+ I + +   +V+I+AG+TG GK+TQ+P+ L++ G+     I  TQPRR+A 
Sbjct: 14  QLPVVADKKRIQNAIRDNQVIILAGETGSGKTTQLPKMLLEMGYAEKGMIGHTQPRRLAA 73

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            S+++R+A E        VG++IRF+      T I  +T+G+LL
Sbjct: 74  RSVAQRIADELEEPLGKTVGFKIRFQDTASADTSIKLMTDGILL 117



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L  Y  +++DE HER L+ DFLLGV++ L+    ++K+I+ SATI  E F  +F
Sbjct: 123  DRLLQKYSAIIIDEAHERSLNIDFLLGVLRQLIDKRPDLKVIITSATIETERFSKHF 179


>gi|325181117|emb|CCA15532.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 719

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 151/441 (34%), Positives = 244/441 (55%), Gaps = 20/441 (4%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR---I 373
           L  Y V++LDE HER L  D L GV+K  L S  ++K+I+MSAT+++ LF  +F     +
Sbjct: 65  LDRYSVIILDEAHERTLQTDILFGVLKRALRSRTDLKVIVMSATLDVSLFRRFFTEKTIV 124

Query: 374 AKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMS 433
             +I++PGR YP+ L Y       +T  + LD      +++I+         G +L+F++
Sbjct: 125 PHVIRIPGRQYPVDLFYSL-----KTLPDYLDAA----LITILQIHLEDKRNGSILVFLT 175

Query: 434 GISEISSIVRAAQEYNEK----SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
           G  +I ++    ++Y +     +   IV P+++ +  E+Q RVF     G+RK I++TNI
Sbjct: 176 GQEDIDNLQSLLEDYAKTLPPTAFKLIVCPIYAAMPREQQMRVFEPVSHGVRKVILATNI 235

Query: 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYR 549
           AETSITI  +R+VVD+G VK+ SY   + +  LQ   +SKA A QR GRAGR  PGVCYR
Sbjct: 236 AETSITIRDVRYVVDTGLVKQRSYAPNSGVEILQIEPVSKAQAWQRTGRAGREAPGVCYR 295

Query: 550 LYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLT 609
           L+ E+ +  L++ S P+I+RVS++S++L L  MG+ D+  F FLE P    +  ++  L 
Sbjct: 296 LFPEKTFDKLSDRSIPDIQRVSLESVVLQLKSMGIDDILSFDFLEKPEVSPLIKAMEKLY 355

Query: 610 QHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRA 669
              A D+  ++T  GR ++ LPV      ML+  +     +  LS+ A+ S++S F    
Sbjct: 356 AFEAFDADGKLTKRGRQMASLPVSPMFAVMLLKATELGCAEEALSVVAMQSIESVFYFPR 415

Query: 670 FRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKL 729
            R      +R +  S+ GD LT+LN Y  +    +   + +KWC+   I  +   +V  +
Sbjct: 416 DRKEQAAQSRAKFVSDDGDQLTLLNIYNGYKECSQK--QREKWCRDHFINSRALRKVESV 473

Query: 730 RSQFKQVLGDSGL--ITDIPG 748
           R Q +  + +  L  ++D P 
Sbjct: 474 REQLRNYIENLHLPILSDFPN 494



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 60/101 (59%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R  PGVCYRL+ E+ +  L++ S P+I+RVS++S++L L  MG+ D+  F FLE P    
Sbjct: 287 REAPGVCYRLFPEKTFDKLSDRSIPDIQRVSLESVVLQLKSMGIDDILSFDFLEKPEVSP 346

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
           +  ++  L    A D+  ++T  GR ++ LPV      ML+
Sbjct: 347 LIKAMEKLYAFEAFDADGKLTKRGRQMASLPVSPMFAVMLL 387



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 1094 RLESMDANEVEFRLKHDPKQVQVAA-DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 1152
            R E M  N  + R   D   V+ A     L  Y V++LDE HER L  D L GV+K  L 
Sbjct: 36   RFEDMSCNRTQVRFLTDGMLVREALLHPCLDRYSVIILDEAHERTLQTDILFGVLKRALR 95

Query: 1153 STAEVKIILMSATINIELFHTYFN 1176
            S  ++K+I+MSAT+++ LF  +F 
Sbjct: 96   SRTDLKVIVMSATLDVSLFRRFFT 119



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 83  IACTQPRRIACISLSKRVAYE-TLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           +A TQPRR+A I++++RV+ E        +VGY +RFE     +T++ F+T+G+L+R+
Sbjct: 1   MAVTQPRRVAAITVAQRVSDELNKDLIGGIVGYSVRFEDMSCNRTQVRFLTDGMLVRE 58


>gi|291239426|ref|XP_002739624.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 38-like
            [Saccoglossus kowalevskii]
          Length = 1227

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 148/437 (33%), Positives = 242/437 (55%), Gaps = 33/437 (7%)

Query: 317  LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
            L +Y  +++DE HER L+ D L G+++ ++    ++K+I+ SAT++   F  +F  +  I
Sbjct: 642  LDNYSAIIMDEAHERSLNTDVLFGLLRDVVARRQDLKLIVTSATMDASKFARFFGNVP-I 700

Query: 377  IKVPGRLYPIQLEYHPIVELDRTKSE-------KLDPGPYIRILSIIDKKYPRTERGDVL 429
             ++PGR +P+ + +   V  D   S         L P P                 GD+L
Sbjct: 701  FQIPGRTFPVDILFSKNVVEDYVDSSVKQALQIHLQPAP-----------------GDIL 743

Query: 430  IFMSGISEIS---SIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
            +FM G  +I     ++    E  E +    +LP++S L  + Q ++F  AP+G+RKC+V+
Sbjct: 744  VFMPGQEDIEVTCDLIAERLEEIENAPQLAILPIYSQLPSDLQAKIFQKAPDGVRKCVVA 803

Query: 487  TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
            TNIAETS+T+DGI FVVDSG  K   ++    M  LQ + IS+A+A QR GRAGRTGPG 
Sbjct: 804  TNIAETSLTVDGIMFVVDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQ 863

Query: 547  CYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
            CYRLY+E  Y S L   + PEI+R ++ +++L L  +G+ D+ +F F++ PP +NI +S+
Sbjct: 864  CYRLYTESAYKSELLTMTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPQDNILNSM 923

Query: 606  RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
              L   GA+D+   +T +GR + + P+D  L K+L+          +L + ++LSV S F
Sbjct: 924  YQLWILGALDNTGNLTPIGRQMVEFPLDPALSKVLIVSCDMGCSAEILIIVSMLSVPSIF 983

Query: 666  TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYE 725
                 R+ + + AR++      D LT LN Y++W    K+   S  WC    +  +   +
Sbjct: 984  FRPKGREEESDAAREKFAVPESDHLTFLNVYQQW----KNNNYSAMWCNEHFVHVKAMRK 1039

Query: 726  VTKLRSQFKQVLGDSGL 742
            V ++R Q K+++  S +
Sbjct: 1040 VREVRQQLKEIMDQSKM 1056



 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 82/140 (58%), Gaps = 17/140 (12%)

Query: 17  LDFKQKEKFSTLMK--------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGD 62
           +D+K +++F+  MK              +RE +  LP+   K ++   +    VV+I G+
Sbjct: 496 VDYKSQQQFADHMKNKTEATSDFARDKSLREQRQYLPIFAVKAKLSSVIRDNNVVVIVGE 555

Query: 63  TGCGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE 119
           TG GK+TQ+ QYL + GF +   I CTQPRR+A +S++KRV+ E        VGY IRFE
Sbjct: 556 TGSGKTTQLTQYLHEEGFSKYGMIGCTQPRRVAAMSVAKRVSEEMDVSLGEEVGYAIRFE 615

Query: 120 KHRREKTKIVFITEGLLLRQ 139
               ++T I ++T+G+LLR+
Sbjct: 616 DVTSKRTIIKYMTDGILLRE 635



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y S L   + PEI+R ++ +++L L  +G+ D+ +F F++ PP +
Sbjct: 858 RTGPGQCYRLYTESAYKSELLTMTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPQD 917

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
           NI +S+  L   GA+D+   +T +GR + + P+D  L K+L+
Sbjct: 918 NILNSMYQLWILGALDNTGNLTPIGRQMVEFPLDPALSKVLI 959



 Score = 46.6 bits (109), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 39/66 (59%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L +Y  +++DE HER L+ D L G+++ ++    ++K+I+ SAT++   F  +F  +   
Sbjct: 642  LDNYSAIIMDEAHERSLNTDVLFGLLRDVVARRQDLKLIVTSATMDASKFARFFGNVPIF 701

Query: 1182 LLSGST 1187
             + G T
Sbjct: 702  QIPGRT 707


>gi|146422384|ref|XP_001487131.1| hypothetical protein PGUG_00508 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1115

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 155/433 (35%), Positives = 235/433 (54%), Gaps = 20/433 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  +S Y V++LDE HER +  D L  ++K        +KII+ SAT++ E F  Y
Sbjct: 552 EALNDKEMSKYSVIMLDEAHERTIATDVLFALLKQAALKNPNLKIIVTSATLDSEKFSNY 611

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F     I+K+PGR +P+++ Y    E+D   +  LD      ++ I   + P    GD+L
Sbjct: 612 FFNCP-IMKIPGRTFPVEIMYTKEPEVDYLAA-ALD-----SVVQIHVSEGP----GDIL 660

Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F++G  EI      + +  +   E +   I+LP++S L  E Q R+F   P G RK I+
Sbjct: 661 VFLTGQEEIDMSCEILYQRMKVLREAAGELIILPVYSALPSEMQSRIFEPTPAGARKVIL 720

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETS+TIDGI +V+D G VK  ++D    M TL+   IS+A A QR GRAGRTGPG
Sbjct: 721 ATNIAETSVTIDGIYYVIDPGYVKINAFDSKLGMDTLKVSPISQAQANQRSGRAGRTGPG 780

Query: 546 VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            CYRLY+E  Y + +   + PEI+R ++   +L L  MG+ D+  F F++ PPA  + ++
Sbjct: 781 KCYRLYTEAAYRNEMLPNTVPEIQRQNLAYTILMLKAMGINDLVNFEFMDPPPASTMVTA 840

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           ++ L    A+     +T LGR ++D P+D  L K L+    F   + +LS+ A+LSVQS 
Sbjct: 841 LQDLYTLSALGDDGYLTGLGRKMADFPMDPGLAKTLIASVEFGCSEDILSIVAMLSVQSV 900

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F     +    +  +    S  GD LT+LN Y+ W         SK+WC    I E+   
Sbjct: 901 FYRPKDKAVAADQRKARFHSPFGDHLTLLNVYRAW----SMNGSSKQWCSNNFIHERSMR 956

Query: 725 EVTKLRSQFKQVL 737
              ++R Q   ++
Sbjct: 957 RAQEVRRQLVTIM 969



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 11/140 (7%)

Query: 11  LLLRTYLDFKQKEKFS----TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCG 66
           L++  + + ++K K S    T + I+E + +LPV   + +I+  V + + ++I G+TG G
Sbjct: 413 LVISEWREKEKKTKVSFGKRTNLPIKEQRETLPVFSMRDDIVKAVRENQFLVIVGETGSG 472

Query: 67  KSTQIPQYLVQAGFQR-------IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE 119
           K+TQI QYL + GF +       I CTQPRR+A  S++KRV+ E   +    VGY IRF+
Sbjct: 473 KTTQIVQYLYEEGFNQQGDQTKLIGCTQPRRVAAESVAKRVSEEVGCKIGETVGYTIRFD 532

Query: 120 KHRREKTKIVFITEGLLLRQ 139
                 T+I ++T+G+L R+
Sbjct: 533 DKTGPNTRIKYMTDGMLQRE 552



 Score = 76.6 bits (187), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 1/107 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y + +   + PEI+R ++   +L L  MG+ D+  F F++ PPA 
Sbjct: 776 RTGPGKCYRLYTEAAYRNEMLPNTVPEIQRQNLAYTILMLKAMGINDLVNFEFMDPPPAS 835

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMF 914
            + ++++ L    A+     +T LGR ++D P+D  L K L+    F
Sbjct: 836 TMVTALQDLYTLSALGDDGYLTGLGRKMADFPMDPGLAKTLIASVEF 882



 Score = 48.5 bits (114), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q +   D  +S Y V++LDE HER +  D L  ++K        +KII+ SAT++ E F 
Sbjct: 550  QREALNDKEMSKYSVIMLDEAHERTIATDVLFALLKQAALKNPNLKIIVTSATLDSEKFS 609

Query: 1173 TYF 1175
             YF
Sbjct: 610  NYF 612


>gi|323492472|ref|ZP_08097620.1| ATP-dependent RNA helicase HrpA [Vibrio brasiliensis LMG 20546]
 gi|323313259|gb|EGA66375.1| ATP-dependent RNA helicase HrpA [Vibrio brasiliensis LMG 20546]
          Length = 1307

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/393 (36%), Positives = 229/393 (58%), Gaps = 16/393 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190 AEIQHDRYLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 249

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A II+V GR YP++  Y P+   D    ++L+ G +  +  + D+       GD+
Sbjct: 250 HFSN-APIIEVSGRTYPVETRYRPLRGDDDVDRDQLE-GIFDAVDELCDEGL-----GDI 302

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFM+G  EI     A  + N KS    ++PL++ LS  EQ+++F   P   R+ +++TN
Sbjct: 303 LIFMNGEREIRDTADALSKRNLKSTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATN 358

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 359 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI 418

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ ++   E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR L
Sbjct: 419 RLYSEDDFNSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLL 478

Query: 609 TQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI     D K+R+T  GR L+ LP+D  L +M++    +  +  ++ +A+ LS+Q 
Sbjct: 479 EELGAINEKAKDPKKRLTPTGRQLARLPIDPRLARMVLEAPKYGALKELMIIASALSIQD 538

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAY 696
           P    + +    +   +       D LT +N +
Sbjct: 539 PRERPSDKQQSSDDKHRRFFHEESDFLTFVNLW 571



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ ++   E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 410 GRVEEGICIRLYSEDDFNSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKR 469

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI     D K+R+T  GR L+ LP+D  L +M++    +  +  +++
Sbjct: 470 NIQDGVRLLEELGAINEKAKDPKKRLTPTGRQLARLPIDPRLARMVLEAPKYGALKELMI 529

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 530 IASALSIQ--DPRER 542



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K +I   + + +VVI+AG+TG GK+TQ+P+   + G   +  I  TQPRR+A  
Sbjct: 87  LPVSQKKDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E  ++    VGY++RF     E T+I  +T+G+LL
Sbjct: 147 SVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILL 189



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 190  AEIQHDRYLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSK 249

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 250  HFSNAPIIEVSGRT 263


>gi|425772820|gb|EKV11207.1| MRNA splicing factor RNA helicase (Prp16), putative [Penicillium
           digitatum PHI26]
 gi|425782051|gb|EKV19982.1| MRNA splicing factor RNA helicase (Prp16), putative [Penicillium
           digitatum Pd1]
          Length = 933

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 153/427 (35%), Positives = 242/427 (56%), Gaps = 22/427 (5%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L  Y  +++DE HER L+ D L+G++K +L    ++K+I+ SAT+N E F  +F   A+ 
Sbjct: 301 LDKYSCIIMDEAHERALNTDVLMGLLKKVLARRRDLKLIVTSATMNSERFSRFFGGAAEF 360

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
           I +PGR +P+ L +       RT  E        ++L+I    +     GD+L+FM+G  
Sbjct: 361 I-IPGRTFPVDLHF------SRTPCEDYVDSAVKQVLAI----HVSQGAGDILVFMTGQE 409

Query: 437 EISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
           +I +     +E     N+  +   VLP++S L  E+Q ++F  A  G+RK IV+TNIAET
Sbjct: 410 DIEATCELVEERLKQLNDPPK-LSVLPIYSQLPAEQQAKIFEKAAPGVRKVIVATNIAET 468

Query: 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
           S+T+DGI FVVD+G  K   Y+    M  LQ   IS+A+A QR GRAGRTGPG  YRLY+
Sbjct: 469 SLTVDGIMFVVDAGYSKLKVYNPRMGMDGLQVTPISQANANQRSGRAGRTGPGKAYRLYT 528

Query: 553 EEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQH 611
           E  Y + L   + PEI+R S+ + +L L  +G+ D+  F F++ PP E I +S+  L   
Sbjct: 529 ETAYKNELYIQTIPEIQRTSLSNTILLLKSLGVKDLMDFDFMDPPPQETISTSLFELWAL 588

Query: 612 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGS-MFHQIDTVLSLAAVLSVQSPFTNRAF 670
           GA+D+   +TSLGR ++  P+D PL K+++  S  +   + +LS+ A+LSV + F     
Sbjct: 589 GALDNLGDLTSLGRRMTPFPMDPPLAKLIIMASDKYECSEEMLSIVAMLSVPNVFYRPKE 648

Query: 671 RDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLR 730
           R+ + ++AR++      D LT+L+ Y +W    K    S  WC +  +  +      ++R
Sbjct: 649 REEEADSAREKFFVPESDHLTLLHVYTQW----KTNGHSDAWCTKHFLNSKSLRRAKEVR 704

Query: 731 SQFKQVL 737
            Q   ++
Sbjct: 705 DQLLDIM 711



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 77/118 (65%), Gaps = 3/118 (2%)

Query: 25  FSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR-- 82
           FS+   +RE +  LP    +++++  +   +VV++ G+TG GK+TQ+ Q+L + G+ +  
Sbjct: 177 FSSSKTMREQREYLPAFAVREDLMRVIRDNQVVVVVGETGSGKTTQLTQFLHEDGYSKFG 236

Query: 83  -IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            I CTQPRR+A +S++KRV+ E       LVGY IRFE    ++T I ++T+G+LLR+
Sbjct: 237 MIGCTQPRRVAAMSVAKRVSEEMDVDLGALVGYAIRFEDCTSDETVIKYMTDGVLLRE 294



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 73/121 (60%), Gaps = 1/121 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG  YRLY+E  Y + L   + PEI+R S+ + +L L  +G+ D+  F F++ PP 
Sbjct: 516 GRTGPGKAYRLYTETAYKNELYIQTIPEIQRTSLSNTILLLKSLGVKDLMDFDFMDPPPQ 575

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
           E I +S+  L   GA+D+   +T+LGR ++  P+D PL K+++  S  ++    +L  +A
Sbjct: 576 ETISTSLFELWALGALDNLGDLTSLGRRMTPFPMDPPLAKLIIMASDKYECSEEMLSIVA 635

Query: 927 L 927
           +
Sbjct: 636 M 636



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L  Y  +++DE HER L+ D L+G++K +L    ++K+I+ SAT+N E F  +F   A+ 
Sbjct: 301  LDKYSCIIMDEAHERALNTDVLMGLLKKVLARRRDLKLIVTSATMNSERFSRFFGGAAEF 360

Query: 1182 LLSGST 1187
            ++ G T
Sbjct: 361  IIPGRT 366


>gi|114666953|ref|XP_001154075.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 3 [Pan
            troglodytes]
 gi|397468956|ref|XP_003806132.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 2 [Pan paniscus]
          Length = 1181

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 669  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 728

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 729  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 777

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 778  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 836

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 837  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 896

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 897  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 956

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 957  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1016

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1017 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1072

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1073 RRAQDIR---KQMLG 1084



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 530 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 587

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 588 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 647

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 648 FEDCTSPETVIKYMTDGMLLRE 669



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 893  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 952

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 953  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1008



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 673  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 729


>gi|196004254|ref|XP_002111994.1| hypothetical protein TRIADDRAFT_24419 [Trichoplax adhaerens]
 gi|190585893|gb|EDV25961.1| hypothetical protein TRIADDRAFT_24419, partial [Trichoplax
           adhaerens]
          Length = 668

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 245/439 (55%), Gaps = 30/439 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E+ AD  L  Y V++LDE HER ++ D ++G++K +     E+KII+ SAT++ E F  +
Sbjct: 136 EMMADPLLRRYSVVMLDEAHERTINTDVVIGLLKKIQKKRPELKIIISSATLDAEAFRDF 195

Query: 370 FNR---------IAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGP-YIRI-LSIIDK 418
           FN           A I+ + GR++P+ + Y              DP P YI+  +  + K
Sbjct: 196 FNSNTTDDTSLDTASILSIEGRMFPVDIHY------------TADPVPDYIKAAVDTVFK 243

Query: 419 KYPRTERGDVLIFMSGISEISSIVRAAQEYNEK-SQGWIVLPLHSTLSLEEQDRVFHYAP 477
            +   +RGD+L+F++G  E+ + V    +YN +  Q  + LP++  L   EQ +VF   P
Sbjct: 244 IHQNEKRGDILVFLTGQEEVETAVNMTNDYNHQLQQKLMPLPMYGGLPPGEQLKVFKKTP 303

Query: 478 EGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKG 537
           E +RK I +TNIAE SITIDG+ +VVD G VK       A M +L    ISKASA+QR G
Sbjct: 304 ENMRKVIYATNIAEASITIDGVVYVVDCGFVKLKMVLPNAGMESLVIVPISKASAKQRAG 363

Query: 538 RAGRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           RAGR   G  YRL +E+ Y  LL+  + PE++RV++ ++++ L  +G+ +V +F FL  P
Sbjct: 364 RAGRVRSGKAYRLLTEKDYEKLLSSATVPEMQRVNLSAVVIQLKALGIDNVLRFDFLSPP 423

Query: 597 PAENIESSVRSLTQHGAIDSKERVT-SLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
           PA+N+  S+  L    A+D   R+T   G  +++LPVD  LGKML+  S     + +L++
Sbjct: 424 PAKNMIRSLELLYALEALDDYGRLTLGCGNKMAELPVDPMLGKMLLSSSKLECSEEILTI 483

Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKR 715
            A+L VQ+ F     R    + AR++     GD LT+LN YK ++  +K    S KWC+ 
Sbjct: 484 TAMLQVQNIFYTPPKRKAASDNARRKFAVYEGDHLTLLNVYKAFMRCRK----SSKWCQE 539

Query: 716 RGIEEQRFYEVTKLRSQFK 734
             +  +   +   +R + K
Sbjct: 540 NYLNYKALTKAVAIRERLK 558



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 78/122 (63%), Gaps = 6/122 (4%)

Query: 23  EKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ- 81
            +F TL  + + +  LPV QY+  I+  + K   +++ G+TGCGKSTQIPQYL ++G+  
Sbjct: 16  NRFMTL-PLTQQRQRLPVFQYRNHILYMLEKYSTLVVVGETGCGKSTQIPQYLHESGWSK 74

Query: 82  --RIAC-TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR-REKTKIVFITEGLLL 137
             R+ C TQPRRIA ++++ RVA E        VGY IRFE    +  T+I F+T+GLL+
Sbjct: 75  GGRVICVTQPRRIATVTVATRVAEEQGVYLGREVGYAIRFEDCTDKTLTRIKFVTDGLLI 134

Query: 138 RQ 139
           R+
Sbjct: 135 RE 136



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 2/127 (1%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            R   G  YRL +E+ Y  LL+  + PE++RV++ ++++ L  +G+ +V +F FL  PPA
Sbjct: 366 GRVRSGKAYRLLTEKDYEKLLSSATVPEMQRVNLSAVVIQLKALGIDNVLRFDFLSPPPA 425

Query: 867 ENIESSVRSLTQHGAIDSKERVT-TLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
           +N+  S+  L    A+D   R+T   G  +++LPVD  LGKML+  S     + +L +  
Sbjct: 426 KNMIRSLELLYALEALDDYGRLTLGCGNKMAELPVDPMLGKMLLSSSKLECSEEILTITA 485

Query: 926 ALNFGAI 932
            L    I
Sbjct: 486 MLQVQNI 492



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            ++ AD  L  Y V++LDE HER ++ D ++G++K +     E+KII+ SAT++ E F  +
Sbjct: 136  EMMADPLLRRYSVVMLDEAHERTINTDVVIGLLKKIQKKRPELKIIISSATLDAEAFRDF 195

Query: 1175 FNRIAKDLLSGSTA 1188
            FN    D  S  TA
Sbjct: 196  FNSNTTDDTSLDTA 209


>gi|157103583|ref|XP_001648042.1| ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869386|gb|EAT33611.1| AAEL014106-PA [Aedes aegypti]
          Length = 690

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 154/453 (33%), Positives = 252/453 (55%), Gaps = 28/453 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCL-----LHSTAEVKIILMSATINIE 364
           E  +D  L +Y+V++LDE HER +  D L G++K       L     +KII+MSAT+N+ 
Sbjct: 143 EALSDQLLKNYNVVILDEAHERTIATDVLFGIVKKAQSTRRLKMLEPLKIIIMSATMNVN 202

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424
            F  YF     +  + G+ + +++ Y  +  ++  ++          I +I        E
Sbjct: 203 HFSKYFGNCPTLY-LKGKNHIVRV-YQSMENMNYLEAC---------ITTIFQIHEKEQE 251

Query: 425 RGDVLIFMSGISEI---SSIVR--AAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG 479
            GD+L+F++G  EI   +++VR  A Q+ NE S    V P+++ +S + Q   F   P  
Sbjct: 252 SGDILVFLTGQEEIEATTTLVRRLAKQQVNENSLRMRVYPMYAAMSQQAQMDAFTPTPPN 311

Query: 480 LRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRA 539
            RK I++TNIAETS+TI GI++V+D GK K+ +YD    + TL+  WISKA A QR GRA
Sbjct: 312 TRKVILATNIAETSLTISGIKYVIDCGKAKQRAYDPLTGIDTLKVSWISKAQAWQRTGRA 371

Query: 540 GRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 599
           GR   G CYR YS+  +  + E+STPEI R SI +  L L+ +G+ D R+F FL+ PP E
Sbjct: 372 GRMEDGFCYRTYSKSDFQAMKEHSTPEILRCSISASTLQLLALGI-DCREFDFLDKPPPE 430

Query: 600 NIESSVRSLTQHGAIDSKE--RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAA 657
            IES++  L   GAI++ +   +T+LGR ++ LP+D    K+++     + +D +L++ A
Sbjct: 431 AIESALLELKNLGAINTVKVPALTALGRRMAKLPLDPKYAKIVLSAPDHNCLDEILTIVA 490

Query: 658 VLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRG 717
           +LS ++ F N + R      A  +  +  GD +T+LN +KE+    + + +S+KWC    
Sbjct: 491 MLSGENVFVNTSQRREQQLVAHSKFHAKCGDHITLLNVFKEF----RTKDKSRKWCVDNF 546

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
           + ++       +R+Q   +    G+ +   G D
Sbjct: 547 LLDRHLSHAASVRAQLFDICAKMGIRSSSCGND 579



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 76/112 (67%), Gaps = 3/112 (2%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQ 87
           I + + SLP+   ++ I+D V + + VI+ G+TG GKSTQ+PQYL +AG    ++IA TQ
Sbjct: 32  INQHRQSLPIYNIRKTIVDKVRECQTVILIGETGSGKSTQLPQYLHEAGIHGGRKIAITQ 91

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           PRR+A I+++KRVA E      ++VGY +RFE      TKI F+T+G LLR+
Sbjct: 92  PRRVAAITVAKRVATEQGGTVGDVVGYSVRFEDCTSAATKIKFMTDGTLLRE 143



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 69/113 (61%), Gaps = 3/113 (2%)

Query: 813 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 872
           G CYR YS+  +  + E+STPEI R SI +  L L+ +G+ D R+F FL+ PP E IES+
Sbjct: 377 GFCYRTYSKSDFQAMKEHSTPEILRCSISASTLQLLALGI-DCREFDFLDKPPPEAIESA 435

Query: 873 VRSLTQHGAIDSKE--RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           +  L   GAI++ +   +T LGR ++ LP+D    K+++     + +D +L +
Sbjct: 436 LLELKNLGAINTVKVPALTALGRRMAKLPLDPKYAKIVLSAPDHNCLDEILTI 488



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCL-----LHSTAEVKIILMSATINIELFH 1172
            +D  L +Y+V++LDE HER +  D L G++K       L     +KII+MSAT+N+  F 
Sbjct: 146  SDQLLKNYNVVILDEAHERTIATDVLFGIVKKAQSTRRLKMLEPLKIIIMSATMNVNHFS 205

Query: 1173 TYFNRIAKDLLSG 1185
             YF       L G
Sbjct: 206  KYFGNCPTLYLKG 218


>gi|221044526|dbj|BAH13940.1| unnamed protein product [Homo sapiens]
          Length = 1181

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 669  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 728

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 729  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 777

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 778  VFLTGREEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 836

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 837  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 896

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 897  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 956

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 957  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1016

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1017 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1072

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1073 RRAQDIR---KQMLG 1084



 Score = 99.8 bits (247), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 83/142 (58%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I   + SLP+ + K++++  V   +++I+ 
Sbjct: 530 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILGQRESLPIYKLKEQLVQAVHDNQILIVI 587

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 588 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 647

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 648 FEDCTSPETVIKYMTDGMLLRE 669



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 893  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 952

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 953  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1008



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 673  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 729


>gi|119944859|ref|YP_942539.1| ATP-dependent helicase HrpA [Psychromonas ingrahamii 37]
 gi|119863463|gb|ABM02940.1| ATP-dependent helicase HrpA [Psychromonas ingrahamii 37]
          Length = 1296

 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 162/479 (33%), Positives = 258/479 (53%), Gaps = 37/479 (7%)

Query: 279 YDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFL 338
           Y V   D++ ER        G++        E+  D FLS YD +++DE HER L+ DFL
Sbjct: 152 YRVRFTDKVSERSYIKLMTDGIL------LAEIQNDRFLSKYDTIIIDEAHERSLNIDFL 205

Query: 339 LGVIKCLLHSTAEVKIILMSATINIELFHTYF----NRIAKIIKVPGRLYPIQLEYHPIV 394
           LG +K LL    ++K+I+ SATI+ E F  +F     + A II+V GR +P++  Y P+ 
Sbjct: 206 LGYLKRLLPRRPDLKVIITSATIDPERFSNHFISARGKKAPIIEVSGRTFPVETLYRPL- 264

Query: 395 ELDRTKSEKLDPGPYIR-ILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQ 453
                  E    G  I  I + +D+   R  RGD+LIFM+G  EI     A    N +  
Sbjct: 265 -------EDYAGGDQIEGIFNAVDE-LQRLGRGDILIFMNGEREIRDTSDALNRRNLRDT 316

Query: 454 GWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSY 513
              VLPL + LS+ EQ+R+F   P   ++ +++TN+AETS+TI GI++V+D+G V+   Y
Sbjct: 317 E--VLPLFARLSVAEQNRIFQ--PHQGQRIVLATNVAETSLTIPGIKYVIDTGTVRISRY 372

Query: 514 DVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSID 573
               K+  L    IS+ASA QR GR GR   GVC RLYSE+ +     ++ PEI R ++ 
Sbjct: 373 SYRTKVQRLPIEPISQASANQRTGRCGRVSEGVCIRLYSEDDFLARPAFTDPEILRTNLS 432

Query: 574 SLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID-----SKERVTSLGRFLS 628
           S++L ++ +GLGD+ KFPF++ P   NI+  +  L + GA+D     +++++T LGR L+
Sbjct: 433 SVILQMLSLGLGDLNKFPFVQPPEDRNIKDGLVLLEELGAVDLTLQEAQKKLTPLGRQLA 492

Query: 629 DLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGD 688
            LPVD  L +M++    +  +  V+ ++A LS+Q P      +    +   +     + D
Sbjct: 493 KLPVDPRLARMILAAQEYGCVHEVMVISAALSIQDPRERPMDKQQAADEKHRRFVDKNSD 552

Query: 689 PLTVLNAYKEWLGVKKDR-----VRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
            +  +N    W  +K+ R        +K C++  +   R  E   + +Q KQV+ + G+
Sbjct: 553 FIAFVNL---WDYIKEQRHELSSSHFRKMCQKEFLAYMRVREWQDIYTQIKQVIDELGI 608



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 81/134 (60%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   GVC RLYSE+ +     ++ PEI R ++ S++L ++ +GLGD+ KFPF++ P   N
Sbjct: 400 RVSEGVCIRLYSEDDFLARPAFTDPEILRTNLSSVILQMLSLGLGDLNKFPFVQPPEDRN 459

Query: 869 IESSVRSLTQHGAID-----SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+  +  L + GA+D     +++++T LGR L+ LPVD  L +M++    +  +  ++++
Sbjct: 460 IKDGLVLLEELGAVDLTLQEAQKKLTPLGRQLAKLPVDPRLARMILAAQEYGCVHEVMVI 519

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 520 SAALSIQ--DPRER 531



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
           +LPV+Q K +I+ T+   +VVIIAG+TG GK+TQIP+  ++ G      I  TQPRRIA 
Sbjct: 72  NLPVSQKKDDILATIRDNQVVIIAGETGSGKTTQIPKICLELGRGVSGLIGHTQPRRIAA 131

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  S     VGY++RF     E++ I  +T+G+LL
Sbjct: 132 RTVANRIAEELDSIVGETVGYRVRFTDKVSERSYIKLMTDGILL 175



 Score = 63.2 bits (152), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FLS YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 176  AEIQNDRFLSKYDTIIIDEAHERSLNIDFLLGYLKRLLPRRPDLKVIITSATIDPERFSN 235

Query: 1174 YF 1175
            +F
Sbjct: 236  HF 237



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FLS YD +I+DE HER L  DFLLG +
Sbjct: 176 AEIQNDRFLSKYDTIIIDEAHERSLNIDFLLGYL 209


>gi|302535747|ref|ZP_07288089.1| ATP-dependent helicase HrpA [Streptomyces sp. C]
 gi|302444642|gb|EFL16458.1| ATP-dependent helicase HrpA [Streptomyces sp. C]
          Length = 1307

 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 156/445 (35%), Positives = 246/445 (55%), Gaps = 24/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 177 AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLATLLPKRPDLKVVITSATIDPERFSR 236

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A I++V GR YP+++ Y P++E D   SE+ D      I   +D+       GD+
Sbjct: 237 HFGD-APIVEVSGRTYPVEVRYRPLLEED---SEESDRDQITAICDAVDELQGEGP-GDI 291

Query: 429 LIFMSGISEI----SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           L+F+SG  EI     ++V+    + E      VLPL++ LS  EQ RVF   P   R+ +
Sbjct: 292 LVFLSGEREIRDTADALVKKKLRFTE------VLPLYARLSHAEQHRVFQ--PHTGRRIV 343

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  
Sbjct: 344 LATNVAETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSD 403

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G+C RLYSE+ ++   E++  EI R ++ S++L +   GLG++ KFPF++ P   NI   
Sbjct: 404 GICIRLYSEDDFNGRPEFTDAEILRTNLASVILQMTAAGLGEIEKFPFIDPPDHRNIRDG 463

Query: 605 VRSLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVL 659
           V+ L + GA+D  E     R+T +GR LS LPVD  L +M+V     + +  V+ +AA L
Sbjct: 464 VQLLQELGALDPAEKDHRKRLTPMGRQLSQLPVDPRLARMVVEADKNNCVREVMVIAAAL 523

Query: 660 SVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRG 717
           S+Q P    + +    +      +    D L+ LN ++     +K+R  S  ++ CK+  
Sbjct: 524 SIQDPRERPSDKQTQADQNHARFKDETSDFLSYLNMWRYVREQQKERGSSSFRRMCKQEY 583

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q + V    G+
Sbjct: 584 LNFLRIREWQDIYAQLRSVARTMGI 608



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSE+ ++   E++  EI R ++ S++L +   GLG++ KFPF++ P   
Sbjct: 399 GRTSDGICIRLYSEDDFNGRPEFTDAEILRTNLASVILQMTAAGLGEIEKFPFIDPPDHR 458

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI   V+ L + GA+D  E     R+T +GR LS LPVD  L +M+V     + +  +++
Sbjct: 459 NIRDGVQLLQELGALDPAEKDHRKRLTPMGRQLSQLPVDPRLARMVVEADKNNCVREVMV 518

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 519 IAAALSIQ--DPRER 531



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 70/105 (66%), Gaps = 4/105 (3%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
           +LPV+Q K EI + +   +VVI+AG+TG GK+TQIP+  ++ G      I  TQPRRIA 
Sbjct: 72  NLPVSQKKDEIAEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGMIGHTQPRRIAA 131

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLL 137
            ++++R+A E  S+    VG+++RF ++  ++ T +  +T+G+LL
Sbjct: 132 RTVAERIAEELKSEIGQTVGWKVRFTDQVDQDATFVKLMTDGILL 176



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 177  AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLATLLPKRPDLKVVITSATIDPERFSR 236

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 237  HFGDAPIVEVSGRT 250


>gi|34496971|ref|NP_901186.1| ATP-dependent helicase hrpA [Chromobacterium violaceum ATCC 12472]
 gi|34102827|gb|AAQ59191.1| ATP-dependent helicase hrpA [Chromobacterium violaceum ATCC 12472]
          Length = 1311

 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 157/462 (33%), Positives = 258/462 (55%), Gaps = 24/462 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D +L +YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ + F  
Sbjct: 179 AETQTDRYLEAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDADRFAR 238

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A +I+V GR +P+++ Y P+ + D  + E       +     + ++ P    GD+
Sbjct: 239 HFDG-APVIEVSGRTFPVEVRYRPLKQRDEDEREMEMEDAIVDAADELSRQGP----GDM 293

Query: 429 LIFMSGISEISSIVRAAQEYNEKS--QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           L+F+ G  EI    R   E   KS  +G+ +LPL + LS E+Q ++F   P G R+ +++
Sbjct: 294 LVFLPGEREI----RETAEKLRKSGIRGYEILPLFARLSNEDQQKIFK--PSGGRRIVLA 347

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D+G  +   Y   AK+  LQ   IS+A+A QR GR GR   G+
Sbjct: 348 TNVAETSLTVPGIKYVIDTGLARINRYSPRAKVEQLQVEKISQAAARQRAGRCGRVESGI 407

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLY+E+ ++    ++ PEI R ++ +++L +  + LG V  FPFLEAP +  I    +
Sbjct: 408 CVRLYAEDDFNARPAFTDPEIVRSNLAAVILRMAALRLGKVDAFPFLEAPSSRLIADGYQ 467

Query: 607 SLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFT 666
            LT+  A+D K  +T++G+ L+ +PVD  +G++++ G  +H    VL +AA LS+Q P  
Sbjct: 468 VLTELAAVDDKGELTAVGKELARIPVDPKVGRLMLAGRDYHCAREVLIIAAALSIQDP-R 526

Query: 667 NRAFRDPD-CETARKELESNHGDPLTVLNAY---KEWLGVKKDRVRSKKWCKRRGIEEQR 722
            R F   D  E A+        D L+ L+ +    + L  KK   +    C    +   R
Sbjct: 527 ERPFEARDAAEKAQARFNDEKSDFLSFLHLWDFFADALKHKKSNRQLVSACHDHFLSYLR 586

Query: 723 FYEVTKLRSQFKQVLGDSGLIT------DIPGPDASLSSRER 758
             E  +L +Q  ++  + GLIT      D   PDA ++ ++R
Sbjct: 587 MREWRELHAQLAEIASELGLITRDEAHADAEQPDAQMTQKKR 628



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 77/130 (59%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLY+E+ ++    ++ PEI R ++ +++L +  + LG V  FPFLEAP + 
Sbjct: 401 GRVESGICVRLYAEDDFNARPAFTDPEIVRSNLAAVILRMAALRLGKVDAFPFLEAPSSR 460

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I    + LT+  A+D K  +T +G+ L+ +PVD  +G++++ G  +H    +L++  AL
Sbjct: 461 LIADGYQVLTELAAVDDKGELTAVGKELARIPVDPKVGRLMLAGRDYHCAREVLIIAAAL 520

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 521 SIQ--DPRER 528



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           ++LPV Q   +I   + K +VVII G+TG GK+TQIP+  ++ G   F  I  TQPRR+A
Sbjct: 74  DALPVNQKLDDIKSAIDKNQVVIICGETGSGKTTQIPKICLELGRGVFGLIGHTQPRRLA 133

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             S++ R+A E  SQ    VG+++RF     EK+ I  +T+G++L
Sbjct: 134 ARSVATRIAQELGSQLGEHVGFKVRFTDKLSEKSVIKLMTDGIML 178



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D +L +YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ + F  
Sbjct: 179  AETQTDRYLEAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDADRFAR 238

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 239  HFDGAPVIEVSGRT 252



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            +  TD +L +YD +I+DE HER L  DFLLG +
Sbjct: 179 AETQTDRYLEAYDTIIIDEAHERSLNIDFLLGYL 212


>gi|392567535|gb|EIW60710.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Trametes versicolor FP-101664 SS1]
          Length = 664

 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 154/450 (34%), Positives = 243/450 (54%), Gaps = 38/450 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  LS Y V+++DE HER ++ D LLG++K +      +++++ SAT++   F  Y
Sbjct: 153 ETLVDPLLSRYSVIMIDEAHERSIYTDLLLGILKKIRRKRPSLRLVVSSATLDATAFLEY 212

Query: 370 FNRI-----AKIIKVPGRLYPIQLEY--HPIVELDRTKSEKLDPGPYIRILSIIDKKYPR 422
           F        A I+ + GR YP++  Y   P+ +  +  +E         +  I  ++ P 
Sbjct: 213 FTAGNSPDEATIVSLEGRAYPVETAYLQEPVPDYVQKAAEV--------VWGIHLQQTP- 263

Query: 423 TERGDVLIFMSGISEISSIVRAAQEY----NEKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
              GD+L+F+SG  EI   +    E        ++  ++L LH+ LS +EQ RVF  A  
Sbjct: 264 ---GDILVFLSGREEIDRCLELLAELLPTLPRNAKRLVLLALHAGLSTDEQLRVFEPAER 320

Query: 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
           G RK I+STNIAE S+TI+GI++VVDSG VK  +Y+ +  MS+L    IS+ASA QR GR
Sbjct: 321 GTRKVIISTNIAEASVTIEGIKYVVDSGFVKIRTYNPSTAMSSLTTTPISQASATQRAGR 380

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
           AGRT PGVCYRLY+E  +  L   S PEI R  + + +L L  +G+ D+ KF ++ +PPA
Sbjct: 381 AGRTAPGVCYRLYTERAFQQLRVTSPPEITRTDLTTPILQLKSLGIDDLMKFEWVSSPPA 440

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
           E++  ++  L   G +    R+T +G  +++ PV++ + +ML     +   + +L++AA+
Sbjct: 441 ESVLRALEGLAHAGMVGEDGRLTVIGEKVAECPVEVNIARMLFASKDYQCGEEILTIAAM 500

Query: 659 LSVQSPFTNRAFRDPD------CETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW 712
            ++Q  F       PD       E  R++  +  GD LT+LNAY  +        RS  W
Sbjct: 501 TTIQDVFVI-----PDGAPGAIAELERRKFTAEEGDHLTLLNAYNGF----SRYGRSASW 551

Query: 713 CKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
           CK   +  +       +RSQ K+ +   GL
Sbjct: 552 CKAHALSFRAMSRAISIRSQLKKYMQRFGL 581



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 81/124 (65%), Gaps = 5/124 (4%)

Query: 21  QKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF 80
           Q    S+ + ++  +  LP+ ++++ ++  V K  V I+ G TG GK+TQ+PQ+L +AG+
Sbjct: 30  QSAPTSSSLSLQAARERLPIFKHREGLLYAVEKHGVTILVGQTGSGKTTQLPQFLYEAGW 89

Query: 81  ----QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK-HRREKTKIVFITEGL 135
                RIACTQPRR+A  S++ RVA E  S   + VGY IRFE    +E+T+I+++T+G+
Sbjct: 90  AAEGNRIACTQPRRVAATSVASRVAAEVGSILGDEVGYTIRFEDVSDKERTRILYMTDGM 149

Query: 136 LLRQ 139
           L R+
Sbjct: 150 LFRE 153



 Score = 83.2 bits (204), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 1/120 (0%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT PGVCYRLY+E  +  L   S PEI R  + + +L L  +G+ D+ KF ++ +PPAE+
Sbjct: 383 RTAPGVCYRLYTERAFQQLRVTSPPEITRTDLTTPILQLKSLGIDDLMKFEWVSSPPAES 442

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
           +  ++  L   G +    R+T +G  +++ PV++ + +ML F S  +Q    +L   A+ 
Sbjct: 443 VLRALEGLAHAGMVGEDGRLTVIGEKVAECPVEVNIARML-FASKDYQCGEEILTIAAMT 501



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            D  LS Y V+++DE HER ++ D LLG++K +      +++++ SAT++   F  YF 
Sbjct: 157  DPLLSRYSVIMIDEAHERSIYTDLLLGILKKIRRKRPSLRLVVSSATLDATAFLEYFT 214


>gi|261188658|ref|XP_002620743.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis SLH14081]
 gi|239593101|gb|EEQ75682.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis SLH14081]
          Length = 1213

 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 156/434 (35%), Positives = 238/434 (54%), Gaps = 22/434 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E+  D  L  Y V++LDE HER +  D L G++K  +    ++KII+ SAT++ + F  Y
Sbjct: 653  EILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTIIRRPDLKIIVTSATLDADKFSEY 712

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            FN +  I  +PGR YP+++ Y    E     S+ LD    + ++ I    +     GD+L
Sbjct: 713  FN-MCPIFSIPGRTYPVEIMYSREPE-----SDYLDAA-LVTVMQI----HLTEPAGDIL 761

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   K+ G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 762  LFLTGQEEIDTACEILYE-RMKALGPSVPELIILPVYSALPSEMQSRIFEPAPPGSRKVV 820

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETSITID I +VVD G VK+ +YD    M +L    IS+A A+QR GRAGRTGP
Sbjct: 821  IATNIAETSITIDQIYYVVDPGFVKQNAYDPKLGMDSLVVTPISQAQAKQRSGRAGRTGP 880

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP   + +
Sbjct: 881  GKCFRLYTEAAYQSEMLPTTVPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLT 940

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L    A+D +  +T LGR ++D P++  L K+L+        D +LS+ A+LSV S
Sbjct: 941  ALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVEMGCSDEMLSIVAMLSVHS 1000

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +    HGD LT+LN Y  W    K+   S  WC    I+ ++ 
Sbjct: 1001 IFYRPKEKQQQADQKKAKFHDPHGDHLTLLNVYNGW----KNSRFSSPWCFENFIQARQM 1056

Query: 724  YEVTKLRSQFKQVL 737
              V  +R Q   ++
Sbjct: 1057 RRVQDVREQLVTIM 1070



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 87/135 (64%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EWK + ++     Q     T M +++ + SLPV ++++++++ V + +++I+ GDTG GK
Sbjct: 522 EWKRVTQSK---DQSFGRRTNMTMKQQRESLPVFKFRKQLLEAVKENQLLIVVGDTGSGK 578

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQ+ QYL + GF     I CTQPRR+A +S++KRV+ E   +    VGY IRFE     
Sbjct: 579 TTQLTQYLAEGGFANNGIIGCTQPRRVAAVSVAKRVSEEVGCRLGAEVGYTIRFEDCTSP 638

Query: 125 KTKIVFITEGLLLRQ 139
           +TKI ++T+G+L R+
Sbjct: 639 ETKIKYMTDGILQRE 653



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 1/126 (0%)

Query: 808  SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
             RTGPG C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP 
Sbjct: 876  GRTGPGKCFRLYTEAAYQSEMLPTTVPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPT 935

Query: 867  ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
              + +++  L    A+D +  +T LGR ++D P++  L K+L+        D ML +   
Sbjct: 936  NTMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVEMGCSDEMLSIVAM 995

Query: 927  LNFGAI 932
            L+  +I
Sbjct: 996  LSVHSI 1001



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q ++  D  L  Y V++LDE HER +  D L G++K  +    ++KII+ SAT++ + F 
Sbjct: 651  QREILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTIIRRPDLKIIVTSATLDADKFS 710

Query: 1173 TYFN 1176
             YFN
Sbjct: 711  EYFN 714


>gi|301605879|ref|XP_002932570.1| PREDICTED: ATP-dependent RNA helicase DHX8 [Xenopus (Silurana)
            tropicalis]
          Length = 1150

 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 599  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRPDMKLIVTSATLDAVKFSQY 658

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 659  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 707

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 708  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 766

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 767  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 826

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 827  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 886

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 887  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 946

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 947  VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1002

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1003 RRAQDIR---KQMLG 1014



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 460 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIVEQRESLPIYKLKEQLVQAVHDNQILIVI 517

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 518 GETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIR 577

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 578 FEDCTSPETVIKYMTDGMLLRE 599



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 823 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 882

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 883 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 938



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 603  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRPDMKLIVTSATLDAVKFSQYF 659


>gi|296201539|ref|XP_002748077.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 2 [Callithrix
            jacchus]
          Length = 1177

 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 665  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 724

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 725  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 773

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 774  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 832

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 833  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 892

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 893  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 952

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 953  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1012

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1013 VFYRPQDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1068

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1069 RRAQDIR---KQMLG 1080



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 526 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 583

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 584 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 643

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 644 FEDCTSPETVIKYMTDGMLLRE 665



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 889  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 948

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 949  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1004



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 669  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 725


>gi|302687680|ref|XP_003033520.1| hypothetical protein SCHCODRAFT_82121 [Schizophyllum commune H4-8]
 gi|300107214|gb|EFI98617.1| hypothetical protein SCHCODRAFT_82121 [Schizophyllum commune H4-8]
          Length = 1147

 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 152/434 (35%), Positives = 235/434 (54%), Gaps = 23/434 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D   S Y V++LDE HER +  D L G++K  +    ++K+I+ SAT++ E F  Y
Sbjct: 589  ECLIDPLCSQYSVIMLDEAHERTIATDVLFGLLKKAVKRRPDLKLIVTSATLDAEKFSKY 648

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F     I  +PGR YP+++ Y         +S+ LD    I ++ I    +    RGD+L
Sbjct: 649  FFGCP-IFTIPGRTYPVEVLY-----TKEPESDYLD-ASLITVMQI----HLSEPRGDIL 697

Query: 430  IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
            +F++G  EI +    +    +    K    ++LP++S L  E Q RVF   PEG RK ++
Sbjct: 698  LFLTGQEEIDTACEILFERMKALGPKVPELLILPIYSALPSEVQSRVFEPTPEGSRKVVI 757

Query: 486  STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
            +TN+AETS+TI GI +V+D G  K+ +YD    M +L    IS+A A QR GRAGRTGPG
Sbjct: 758  ATNVAETSLTIPGIYYVIDPGFSKQNAYDPRLGMDSLVVMPISQAQARQRAGRAGRTGPG 817

Query: 546  VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
             CYRLY+E  + + +   S P+I+R ++ + +L L  MG+ D+  F F++ PPA+ + ++
Sbjct: 818  KCYRLYTEAAFRNEMLPNSIPDIQRTNLSTTILQLKAMGINDLLSFDFMDPPPAQTMLTA 877

Query: 605  VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            + SL    A+D +  +T LGR ++D P++ PL KML+        + +LS+ A+LSVQS 
Sbjct: 878  LESLYALSALDDEGLLTRLGRKMADFPMEPPLAKMLIASVELGCSEEILSIVAMLSVQSV 937

Query: 665  FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
            F     +    +  + +     GD LT+L  Y  W         S  WC    I+ +   
Sbjct: 938  FYRPKDKQGQADAKKAKFHQAEGDHLTLLTVYNGWKAAN----FSNPWCYENFIQARSMR 993

Query: 725  EVTKLRSQFKQVLG 738
                +R   KQ+LG
Sbjct: 994  RAQDVR---KQLLG 1004



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 78/116 (67%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RI 83
           T + I++ + SLP+ + +  ++  + + +V+I+ GDTG GK+TQ+ QYL +AG+    RI
Sbjct: 474 TSLSIQDQRRSLPIYKLRDPLLKAIDEHQVLIVVGDTGSGKTTQMVQYLAEAGYADKGRI 533

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A +S++KRVA E   +    VGY IRFE     +T+I ++T+G+L R+
Sbjct: 534 GCTQPRRVAAMSVAKRVAEEVGCRLGQEVGYTIRFEDCTSPETRIKYMTDGMLQRE 589



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  + + +   S P+I+R ++ + +L L  MG+ D+  F F++ PPA+
Sbjct: 813 RTGPGKCYRLYTEAAFRNEMLPNSIPDIQRTNLSTTILQLKAMGINDLLSFDFMDPPPAQ 872

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            + +++ SL    A+D +  +T LGR ++D P++ PL KML+
Sbjct: 873 TMLTALESLYALSALDDEGLLTRLGRKMADFPMEPPLAKMLI 914



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPK---QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            +E G  +   D    E R+K+      Q +   D   S Y V++LDE HER +  D L G
Sbjct: 560  QEVGYTIRFEDCTSPETRIKYMTDGMLQRECLIDPLCSQYSVIMLDEAHERTIATDVLFG 619

Query: 1146 VIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            ++K  +    ++K+I+ SAT++ E F  YF
Sbjct: 620  LLKKAVKRRPDLKLIVTSATLDAEKFSKYF 649


>gi|426347902|ref|XP_004041581.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 2 [Gorilla gorilla
            gorilla]
          Length = 1181

 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 669  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 728

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 729  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 777

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 778  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 836

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 837  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 896

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 897  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 956

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 957  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1016

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1017 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1072

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1073 RRAQDIR---KQMLG 1084



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 530 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 587

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 588 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 647

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 648 FEDCTSPETVIKYMTDGMLLRE 669



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 893  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 952

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 953  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1008



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 673  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 729


>gi|325181116|emb|CCA15530.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 724

 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 151/441 (34%), Positives = 244/441 (55%), Gaps = 20/441 (4%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR---I 373
           L  Y V++LDE HER L  D L GV+K  L S  ++K+I+MSAT+++ LF  +F     +
Sbjct: 70  LDRYSVIILDEAHERTLQTDILFGVLKRALRSRTDLKVIVMSATLDVSLFRRFFTEKTIV 129

Query: 374 AKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMS 433
             +I++PGR YP+ L Y       +T  + LD      +++I+         G +L+F++
Sbjct: 130 PHVIRIPGRQYPVDLFYSL-----KTLPDYLDAA----LITILQIHLEDKRNGSILVFLT 180

Query: 434 GISEISSIVRAAQEYNEK----SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
           G  +I ++    ++Y +     +   IV P+++ +  E+Q RVF     G+RK I++TNI
Sbjct: 181 GQEDIDNLQSLLEDYAKTLPPTAFKLIVCPIYAAMPREQQMRVFEPVSHGVRKVILATNI 240

Query: 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYR 549
           AETSITI  +R+VVD+G VK+ SY   + +  LQ   +SKA A QR GRAGR  PGVCYR
Sbjct: 241 AETSITIRDVRYVVDTGLVKQRSYAPNSGVEILQIEPVSKAQAWQRTGRAGREAPGVCYR 300

Query: 550 LYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLT 609
           L+ E+ +  L++ S P+I+RVS++S++L L  MG+ D+  F FLE P    +  ++  L 
Sbjct: 301 LFPEKTFDKLSDRSIPDIQRVSLESVVLQLKSMGIDDILSFDFLEKPEVSPLIKAMEKLY 360

Query: 610 QHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRA 669
              A D+  ++T  GR ++ LPV      ML+  +     +  LS+ A+ S++S F    
Sbjct: 361 AFEAFDADGKLTKRGRQMASLPVSPMFAVMLLKATELGCAEEALSVVAMQSIESVFYFPR 420

Query: 670 FRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKL 729
            R      +R +  S+ GD LT+LN Y  +    +   + +KWC+   I  +   +V  +
Sbjct: 421 DRKEQAAQSRAKFVSDDGDQLTLLNIYNGYKECSQK--QREKWCRDHFINSRALRKVESV 478

Query: 730 RSQFKQVLGDSGL--ITDIPG 748
           R Q +  + +  L  ++D P 
Sbjct: 479 REQLRNYIENLHLPILSDFPN 499



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 60/101 (59%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R  PGVCYRL+ E+ +  L++ S P+I+RVS++S++L L  MG+ D+  F FLE P    
Sbjct: 292 REAPGVCYRLFPEKTFDKLSDRSIPDIQRVSLESVVLQLKSMGIDDILSFDFLEKPEVSP 351

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
           +  ++  L    A D+  ++T  GR ++ LPV      ML+
Sbjct: 352 LIKAMEKLYAFEAFDADGKLTKRGRQMASLPVSPMFAVMLL 392



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 1094 RLESMDANEVEFRLKHDPKQVQVAA-DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 1152
            R E M  N  + R   D   V+ A     L  Y V++LDE HER L  D L GV+K  L 
Sbjct: 41   RFEDMSCNRTQVRFLTDGMLVREALLHPCLDRYSVIILDEAHERTLQTDILFGVLKRALR 100

Query: 1153 STAEVKIILMSATINIELFHTYFN 1176
            S  ++K+I+MSAT+++ LF  +F 
Sbjct: 101  SRTDLKVIVMSATLDVSLFRRFFT 124



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 82  RIACTQPRRIACISLSKRVAYE-TLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           R+A TQPRR+A I++++RV+ E        +VGY +RFE     +T++ F+T+G+L+R+
Sbjct: 5   RMAVTQPRRVAAITVAQRVSDELNKDLIGGIVGYSVRFEDMSCNRTQVRFLTDGMLVRE 63


>gi|149054338|gb|EDM06155.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Rattus norvegicus]
          Length = 1242

 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 691  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 750

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 751  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 799

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 800  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 858

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 859  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 918

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 919  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 978

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 979  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1038

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1039 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1094

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1095 RRAQDIR---KQMLG 1106



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 552 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 609

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 610 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 669

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 670 FEDCTSPETVIKYMTDGMLLRE 691



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 915  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 974

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 975  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1030



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 695  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 751


>gi|355568740|gb|EHH25021.1| ATP-dependent RNA helicase DHX8 [Macaca mulatta]
 gi|355754212|gb|EHH58177.1| ATP-dependent RNA helicase DHX8 [Macaca fascicularis]
          Length = 1169

 Score =  254 bits (648), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 618  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 677

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 678  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 726

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 727  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 785

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 786  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 845

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 846  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 905

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 906  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 965

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 966  VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1021

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1022 RRAQDIR---KQMLG 1033



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 479 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 536

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 537 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 596

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 597 FEDCTSPETVIKYMTDGMLLRE 618



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 842 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 901

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 902 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 957



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 622  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 678


>gi|335297585|ref|XP_003131427.2| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 1 [Sus scrofa]
          Length = 1212

 Score =  254 bits (648), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 661  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 720

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 721  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 769

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 770  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 828

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 829  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 888

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 889  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 948

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 949  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1008

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1009 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1064

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1065 RRAQDIR---KQMLG 1076



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 522 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 579

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 580 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 639

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 640 FEDCTSPETVIKYMTDGMLLRE 661



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 885  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 944

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 945  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1000



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 665  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 721


>gi|345299241|ref|YP_004828599.1| ATP-dependent helicase HrpA [Enterobacter asburiae LF7a]
 gi|345093178|gb|AEN64814.1| ATP-dependent helicase HrpA [Enterobacter asburiae LF7a]
          Length = 1300

 Score =  254 bits (648), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 246/443 (55%), Gaps = 21/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR +P+++ Y PIVE  D T+ ++L       I   +D+       GD
Sbjct: 240 HFNN-APIIEVSGRTFPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGNESAGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + + +     +LPL++ LS  EQ+RVF  A  G R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALSKRDLRHTE--ILPLYARLSNSEQNRVFQ-AHSG-RRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKERVTSL-----GRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
           L + GAI + E+ T+      GR LS LPVD  L +M++       +   + + + LS+Q
Sbjct: 469 LEELGAITTDEQATAYKLTPQGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528

Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
            P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   + 
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRQCRVDFLN 587

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKERVTTL-----GRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI + E+ T       GR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQATAYKLTPQGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILNAVRDNQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    +GY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSK 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|403306347|ref|XP_003943699.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 1 [Saimiri
            boliviensis boliviensis]
          Length = 1216

 Score =  254 bits (648), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 665  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 724

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 725  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 773

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 774  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 832

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 833  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 892

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 893  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 952

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 953  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1012

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1013 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1068

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1069 RRAQDIR---KQMLG 1080



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 526 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 583

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 584 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 643

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 644 FEDCTSPETVIKYMTDGMLLRE 665



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 889  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 948

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 949  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1004



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 669  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 725


>gi|363743449|ref|XP_418105.3| PREDICTED: ATP-dependent RNA helicase DHX8 [Gallus gallus]
          Length = 1192

 Score =  254 bits (648), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 641  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 700

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 701  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 749

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 750  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 808

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 809  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 868

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 869  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 928

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 929  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 988

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 989  VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1044

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1045 RRAQDIR---KQMLG 1056



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T + I E + SLP+ + K+++I  V   +++I+ 
Sbjct: 502 MMPNDIPEWKK--HAFGGNKASYGKKTQLSIIEQRESLPIFRLKEQLIQAVHDNQILIVI 559

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 560 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 619

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 620 FEDCTSPETVIKYMTDGMLLRE 641



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 865 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 924

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 925 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 980



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 645  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 701


>gi|357604007|gb|EHJ64003.1| ATP-dependent RNA helicase [Danaus plexippus]
          Length = 816

 Score =  254 bits (648), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 155/435 (35%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L SY V++LDE HER +H D L G++K  +    E+K+I+ SAT++   F  Y
Sbjct: 264 ECLMDLDLKSYSVIMLDEAHERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQY 323

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A I  +PGR +P+++ Y    E D   +        I ++ I  ++ P    GD+L
Sbjct: 324 FFE-APIFTIPGRTFPVEVLYTKEPETDYLDAS------LITVMQIHLREPP----GDIL 372

Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 373 LFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVV 431

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TNIAETS+TIDGI +VVD G VK+  Y+    M +L    IS+A+A+QR GRAGRTGP
Sbjct: 432 IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGP 491

Query: 545 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           G CYRLY+E  Y   +     PEI+R ++ + +L L  MG+ D+  F F++APP E++  
Sbjct: 492 GKCYRLYTERAYRDEMLPTPVPEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLIM 551

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
           ++  L    A+D++  +T LGR +++ P++  L K+L+        D +L++ ++LSVQ+
Sbjct: 552 ALEQLHSLSALDAEGLLTRLGRRMAEFPLEPNLSKILIMSVALQCSDEILTIVSMLSVQN 611

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
            F     +    +  + +     GD LT+L  Y  W    K+   S  WC    ++ +  
Sbjct: 612 VFYRPKDKQALADQKKAKFNQAEGDHLTLLAVYNSW----KNNKFSNAWCYENFVQIRTL 667

Query: 724 YEVTKLRSQFKQVLG 738
                +R   KQ+LG
Sbjct: 668 KRAQDVR---KQLLG 679



 Score = 97.1 bits (240), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 84/144 (58%), Gaps = 9/144 (6%)

Query: 1   MSPALYEEWK--LLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVI 58
           ++P    EWK  ++      F +K   S L    E + SLP+ + + E+   +   +++I
Sbjct: 125 ITPQDLPEWKKHVIGGKKSSFGKKTNLSLL----EQRQSLPIYKLRDELTKAISDNQILI 180

Query: 59  IAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQ 115
           + G+TG GK+TQI QY+ + G     R+ACTQPRR+A +S++KRVA E   +    VGY 
Sbjct: 181 VIGETGSGKTTQITQYVCECGVSGRGRVACTQPRRVAAMSVAKRVAEEFGCRLGQEVGYT 240

Query: 116 IRFEKHRREKTKIVFITEGLLLRQ 139
           IRFE      T I ++T+G+LLR+
Sbjct: 241 IRFEDCTGPDTVIKYMTDGMLLRE 264



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 1/117 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG CYRLY+E  Y   +     PEI+R ++ + +L L  MG+ D+  F F++APP 
Sbjct: 487 GRTGPGKCYRLYTERAYRDEMLPTPVPEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPV 546

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           E++  ++  L    A+D++  +T LGR +++ P++  L K+L+        D +L +
Sbjct: 547 ESLIMALEQLHSLSALDAEGLLTRLGRRMAEFPLEPNLSKILIMSVALQCSDEILTI 603



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            L SY V++LDE HER +H D L G++K  +    E+K+I+ SAT++   F  YF
Sbjct: 271  LKSYSVIMLDEAHERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYF 324


>gi|226329941|ref|ZP_03805459.1| hypothetical protein PROPEN_03854 [Proteus penneri ATCC 35198]
 gi|225200736|gb|EEG83090.1| ATP-dependent helicase HrpA [Proteus penneri ATCC 35198]
          Length = 1209

 Score =  254 bits (648), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 155/445 (34%), Positives = 253/445 (56%), Gaps = 24/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 176 AELQQDKLLLQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSK 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIV--ELDRTKSEKLDPGPYIRILSIIDKKYPRTERG 426
           +F++ A II+V GR YP+++ Y PI   ELD  K   +  G    I+  ID+   R   G
Sbjct: 236 HFSQ-APIIEVSGRTYPVEVRYRPIGGDELDSDKD--MTDG----IIDAIDE-LSRESAG 287

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFMSG  EI     A  +   +     +LPL + LS  EQ+R+FH  P   R+ I++
Sbjct: 288 DILIFMSGEREIRDTADALNKLQLRHTE--ILPLFARLSNSEQNRIFH--PHSGRRIILA 343

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D+G  +   Y    K+  L    IS+ASA QRKGR GR   G+
Sbjct: 344 TNVAETSLTVPGIKYVIDTGFARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSDGI 403

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSE+ +   +E++ PEI R ++ S++L +  +GLGD+  FPF++ P   NI+  VR
Sbjct: 404 CIRLYSEDDFISRSEFTDPEILRTNLASVILQMTSIGLGDISAFPFVQPPDKRNIQDGVR 463

Query: 607 SLTQHGAI----DSKE--RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            L + GA+    D+K   R+T +G+ L+ LP+D  L +M++    +  +  ++ + + LS
Sbjct: 464 LLEELGALQEGTDNKGAYRLTPMGKQLAQLPIDPRLARMVLEARKYGAVKELMVITSALS 523

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRV---RSKKWCKRRG 717
           +Q P      +    +   +  +    D L+ LN + ++L +++  +   + +K C++  
Sbjct: 524 IQDPRERPMDKQQASDEKHRRFQDKDSDFLSFLNMW-DYLKIQQKELSHSQFRKLCRQEF 582

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + G 
Sbjct: 583 LNFMRVREWQDVYTQLRQVVKELGF 607



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 81/136 (59%), Gaps = 8/136 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +   +E++ PEI R ++ S++L +  +GLGD+  FPF++ P   
Sbjct: 397 GRVSDGICIRLYSEDDFISRSEFTDPEILRTNLASVILQMTSIGLGDISAFPFVQPPDKR 456

Query: 868 NIESSVRSLTQHGAI----DSKE--RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           NI+  VR L + GA+    D+K   R+T +G+ L+ LP+D  L +M++    +  +  ++
Sbjct: 457 NIQDGVRLLEELGALQEGTDNKGAYRLTPMGKQLAQLPIDPRLARMVLEARKYGAVKELM 516

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 517 VITSALSIQ--DPRER 530



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 7/106 (6%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ-----AGFQRIACTQPRRI 91
           +LPV+Q K  I + +   +VVIIAG+TG GK+TQIP+  ++      GF  I  TQPRR+
Sbjct: 72  NLPVSQKKGAIYNAIRDNQVVIIAGETGSGKTTQIPKICLELGRGIKGF--IGHTQPRRL 129

Query: 92  ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           A  S+++R+A+E  S     VGY++RF  H  + T +  +T+G+LL
Sbjct: 130 AARSVAERIAHELKSTLGGAVGYKVRFSDHVGDNTLVKLMTDGILL 175



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 176  AELQQDKLLLQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSK 235

Query: 1174 YFNRIAKDLLSGST 1187
            +F++     +SG T
Sbjct: 236  HFSQAPIIEVSGRT 249


>gi|195124361|ref|XP_002006662.1| GI21186 [Drosophila mojavensis]
 gi|193911730|gb|EDW10597.1| GI21186 [Drosophila mojavensis]
          Length = 1260

 Score =  254 bits (648), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 160/431 (37%), Positives = 240/431 (55%), Gaps = 31/431 (7%)

Query: 317  LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
            L SY V++LDE HER +H D L G++K  +    E+K+I+ SAT++   F  YF   A I
Sbjct: 715  LKSYSVIMLDEAHERTIHTDVLFGLLKTAVQKRPELKLIVTSATLDAVKFSQYFFE-API 773

Query: 377  IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
              +PGR +P+++ Y    E D      LD    I ++ I  ++ P    GD+L+F++G  
Sbjct: 774  FTIPGRTFPVEVLYTKEPETDY-----LD-ASLITVMQIHLREPP----GDILLFLTGQE 823

Query: 437  EISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAE 491
            EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +++TNIAE
Sbjct: 824  EIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPAGSRKVVIATNIAE 882

Query: 492  TSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLY 551
            TS+TIDGI +VVD G VK+  Y+    M +L    IS+A+A+QR GRAGRTGPG CYRLY
Sbjct: 883  TSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKCYRLY 942

Query: 552  SEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQ 610
            +E  Y   +     PEI+R ++ + +L L  MG+ D+  F F++APP E++  ++  L  
Sbjct: 943  TERAYRDEMLPTPVPEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLVMALEQLHS 1002

Query: 611  HGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAF 670
              A+D +  +T LGR +++ P++  L KML+        D +L++ ++LSVQ+ F     
Sbjct: 1003 LSALDDEGLLTRLGRRMAEFPLEPNLSKMLIMSVALQCSDEILTIVSMLSVQNVFYRPKD 1062

Query: 671  RDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKL- 729
            +    +  + +     GD LT+L  Y  W    K+   S  WC       + F ++  L 
Sbjct: 1063 KQALADQKKAKFNQAEGDHLTLLAVYNSW----KNNKFSNAWCY------ENFVQIRTLK 1112

Query: 730  RSQ--FKQVLG 738
            RSQ   KQ+LG
Sbjct: 1113 RSQDVRKQLLG 1123



 Score =  100 bits (248), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 86/143 (60%), Gaps = 9/143 (6%)

Query: 2   SPALYEEWKLLLRTYLDFKQKEKFS--TLMKIRETQNSLPVAQYKQEIIDTVLKERVVII 59
           +P    EWK     ++   +K  F   T + + E + SLP+ + + ++I  V   +++I+
Sbjct: 570 APQEVPEWK----KHVIGGKKSSFGKKTDLTLVEQRQSLPIYKLRDDLIKAVTDNQILIV 625

Query: 60  AGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQI 116
            G+TG GK+TQI QYL + GF    +I CTQPRR+A +S++KRVA E   +    VGY I
Sbjct: 626 IGETGSGKTTQITQYLGECGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTI 685

Query: 117 RFEKHRREKTKIVFITEGLLLRQ 139
           RFE     +T I ++T+G+LLR+
Sbjct: 686 RFEDCTSPETVIKYMTDGMLLRE 708



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +     PEI+R ++ + +L L  MG+ D+  F F++APP E
Sbjct: 932  RTGPGKCYRLYTERAYRDEMLPTPVPEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVE 991

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            ++  ++  L    A+D +  +T LGR +++ P++  L KML+        D +L +
Sbjct: 992  SLVMALEQLHSLSALDDEGLLTRLGRRMAEFPLEPNLSKMLIMSVALQCSDEILTI 1047



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            L SY V++LDE HER +H D L G++K  +    E+K+I+ SAT++   F  YF
Sbjct: 715  LKSYSVIMLDEAHERTIHTDVLFGLLKTAVQKRPELKLIVTSATLDAVKFSQYF 768


>gi|296201537|ref|XP_002748076.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 1 [Callithrix
            jacchus]
          Length = 1216

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 665  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 724

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 725  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 773

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 774  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 832

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 833  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 892

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 893  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 952

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 953  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1012

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1013 VFYRPQDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1068

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1069 RRAQDIR---KQMLG 1080



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 526 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 583

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 584 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 643

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 644 FEDCTSPETVIKYMTDGMLLRE 665



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 889  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 948

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 949  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1004



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 669  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 725


>gi|194216852|ref|XP_001491740.2| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 2 [Equus caballus]
          Length = 1226

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 675  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 734

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 735  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 783

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 784  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 842

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 843  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 902

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 903  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 962

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 963  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1022

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1023 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1078

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1079 RRAQDIR---KQMLG 1090



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 536 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 593

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 594 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 653

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 654 FEDCTSPETVIKYMTDGMLLRE 675



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 899  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 958

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 959  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1014



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 679  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 735


>gi|68075199|ref|XP_679516.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56500280|emb|CAH98410.1| RNA helicase, putative [Plasmodium berghei]
          Length = 1162

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 248/453 (54%), Gaps = 21/453 (4%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E  +D  LS Y  ++LD  HER +  D L  ++K ++   ++ K+I+ SAT++ E F  Y
Sbjct: 606  EALSDTMLSRYSFIILDXAHERTISTDILFCLLKDVVKKRSDFKLIVTSATLDAEKFSAY 665

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   + I  +PG+++P+++ +    E D  ++        I +L+I   ++P    GD+L
Sbjct: 666  FFN-SPIFTIPGKIFPVEILHSKEPESDYVEA------CLITVLNIHLNEHP----GDIL 714

Query: 430  IFMSGISEISSIVRAAQEYNEKSQGW-----IVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI++      E  +K +       I+LP++S+L  E Q  +F  AP G RKCI
Sbjct: 715  VFLTGQEEINTACEILHERMKKLESMSPPPLIILPIYSSLPSEMQSIIFEPAPPGCRKCI 774

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAE S+TIDGI FV+D G  K   YD    M +L    ISKA+A+QR GRAGRTGP
Sbjct: 775  LATNIAEASLTIDGIFFVIDPGFCKIKKYDSKRDMDSLIIAPISKANAKQRAGRAGRTGP 834

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+EE Y + +AE S PEI+R+++ S++L L  +G+ D   F F+++P  E +  
Sbjct: 835  GKCYRLYTEEAYKNEMAETSVPEIQRINLGSIVLLLKALGVNDFLHFDFMDSPSIETLIY 894

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            S+ +L   GA+D    +T LG+ +S+ P++  L K+L+    F+  D + ++ +++SVQ+
Sbjct: 895  SLENLYYLGALDDNGYLTKLGKKMSNFPMEPNLSKILLTSINFNCTDDICTIVSMISVQN 954

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD +T LN Y +W    K+   S  WC    I+ +  
Sbjct: 955  IFYRPQNKILLADKKKNKFIMPQGDLITYLNIYNKW----KENSFSNYWCHENFIQSRAL 1010

Query: 724  YEVTKLRSQFKQVLGDSGLITDIPGPDASLSSR 756
                 +R Q   +           G D S S+ 
Sbjct: 1011 KRAQDVRKQLLSIFEKYNYQVKKRGYDISNSTN 1043



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 78/135 (57%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           +WK   + Y++          + + E +  LP+   K +++  + K  V+I+ G+TG GK
Sbjct: 475 DWK---KNYINNNISIGIKNSLPLTEQRKKLPIYNLKLDLMKAIKKNNVLIVIGETGSGK 531

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQIPQYL +A +     + CTQPRR+A +S++KRV+ E        VGY IRF+     
Sbjct: 532 TTQIPQYLHEAKYTDHGIVGCTQPRRVAAMSIAKRVSEEFGCILGQEVGYSIRFDDCTSN 591

Query: 125 KTKIVFITEGLLLRQ 139
            T I ++T+G+LLR+
Sbjct: 592 DTIIKYLTDGMLLRE 606



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 73/116 (62%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+EE Y + +AE S PEI+R+++ S++L L  +G+ D   F F+++P  E
Sbjct: 831 RTGPGKCYRLYTEEAYKNEMAETSVPEIQRINLGSIVLLLKALGVNDFLHFDFMDSPSIE 890

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            +  S+ +L   GA+D    +T LG+ +S+ P++  L K+L+    F+  D +  +
Sbjct: 891 TLIYSLENLYYLGALDDNGYLTKLGKKMSNFPMEPNLSKILLTSINFNCTDDICTI 946



 Score = 47.0 bits (110), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            +  +D  LS Y  ++LD  HER +  D L  ++K ++   ++ K+I+ SAT++ E F  Y
Sbjct: 606  EALSDTMLSRYSFIILDXAHERTISTDILFCLLKDVVKKRSDFKLIVTSATLDAEKFSAY 665

Query: 1175 F 1175
            F
Sbjct: 666  F 666


>gi|406607226|emb|CCH41487.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
          Length = 1099

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 155/436 (35%), Positives = 238/436 (54%), Gaps = 26/436 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  +S+Y V++LDE HER +  D L  ++K       ++KII+ SAT++   F  Y
Sbjct: 539 EALIDPDMSNYSVIMLDEAHERTIATDVLFALLKEAASRRPDLKIIVTSATLDAGKFSGY 598

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           FN    I+++PGR YP+++ Y    ELD   +  LD    I I             GD+L
Sbjct: 599 FNNCP-IVEIPGRTYPVEILYTKEPELDYLAA-ALDSVVQIHI---------SEPEGDIL 647

Query: 430 IFMSGISEISSIVRAAQEYNEKSQGW-------IVLPLHSTLSLEEQDRVFHYAPEGLRK 482
           +F++G  EI + V   Q  NEK +         IVLP++S L  E Q R+F   P+G RK
Sbjct: 648 VFLTGQEEIETSV---QVLNEKMKALGSSIPELIVLPVYSALPSETQSRIFEPTPKGSRK 704

Query: 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542
            I++TNIAETS+TIDGI +V+D G  K  +YD    M +L    IS+A A QR GRAGRT
Sbjct: 705 VILATNIAETSLTIDGIYYVIDPGFSKINAYDPKLGMDSLTVRPISQAQANQRAGRAGRT 764

Query: 543 GPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENI 601
           GPG C+RLY+E  Y + +   + PEI+R ++ +++L L  +G+ D+  F F++ P  ++I
Sbjct: 765 GPGKCFRLYTELAYQNEMLPNTIPEIQRQNLSNVILMLKAIGINDLLNFQFMDPPSTDSI 824

Query: 602 ESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
             S+  L    A+D + R+T++GR L ++P D  + K L+    +   D ++++ AVLS 
Sbjct: 825 LLSLNELYYLKAVDEESRITTIGRNLVNIPADPTISKTLIESIHYKCSDEMITIFAVLST 884

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQ 721
            + F     +    +  +      HGD LT LN Y  W+    +   SK+WC+   I+E+
Sbjct: 885 PNIFNRPKQQQELADKKKARFHHPHGDHLTYLNVYNAWV----NNDYSKQWCQENFIQER 940

Query: 722 RFYEVTKLRSQFKQVL 737
                  +R+Q  Q+ 
Sbjct: 941 SLKRAQDVRNQLIQIF 956



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---I 83
           T + ++E + SLPV + +  ++  V   + ++I G+TG GK+TQ+ QYL + GF     I
Sbjct: 424 TDLSMKEQRESLPVFKMRSTLMKAVSDNQFIVIVGETGSGKTTQLTQYLYEDGFANRGVI 483

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A  S+++RVA E   +    VGY +RF+     KTKI ++T+G+L R+
Sbjct: 484 GCTQPRRVAAQSVARRVADEVGCRVGQEVGYTVRFDDLSSPKTKIKYMTDGMLQRE 539



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG C+RLY+E  Y + +   + PEI+R ++ +++L L  +G+ D+  F F++ P  +
Sbjct: 763 RTGPGKCFRLYTELAYQNEMLPNTIPEIQRQNLSNVILMLKAIGINDLLNFQFMDPPSTD 822

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           +I  S+  L    A+D + R+TT+GR L ++P D  + K L+    +   D M+ +
Sbjct: 823 SILLSLNELYYLKAVDEESRITTIGRNLVNIPADPTISKTLIESIHYKCSDEMITI 878



 Score = 47.8 bits (112), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q +   D  +S+Y V++LDE HER +  D L  ++K       ++KII+ SAT++   F 
Sbjct: 537  QREALIDPDMSNYSVIMLDEAHERTIATDVLFALLKEAASRRPDLKIIVTSATLDAGKFS 596

Query: 1173 TYFN 1176
             YFN
Sbjct: 597  GYFN 600


>gi|417406191|gb|JAA49762.1| Putative mrna splicing factor atp-dependent rna helicase [Desmodus
            rotundus]
          Length = 1226

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 675  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 734

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 735  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 783

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 784  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 842

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 843  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 902

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 903  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 962

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 963  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1022

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1023 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1078

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1079 RRAQDIR---KQMLG 1090



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 536 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 593

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 594 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 653

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 654 FEDCTSPETVIKYMTDGMLLRE 675



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 899  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 958

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 959  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1014



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 679  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 735


>gi|395532281|ref|XP_003768199.1| PREDICTED: ATP-dependent RNA helicase DHX8 [Sarcophilus harrisii]
          Length = 1195

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 644  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 703

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 704  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 752

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 753  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 811

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 812  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 871

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 872  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 931

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 932  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 991

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 992  VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1047

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1048 RRAQDIR---KQMLG 1059



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T + I E + SLP+ + K++++  V   +++I+ 
Sbjct: 505 MMPNDIPEWKK--HAFGGNKASYGKKTQLSIIEQRESLPIFKLKEQLVQAVHDNQILIVI 562

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 563 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 622

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 623 FEDCTSPETVIKYMTDGMLLRE 644



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 868 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 927

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 928 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 983



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 648  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 704


>gi|389582774|dbj|GAB65511.1| RNA helicase [Plasmodium cynomolgi strain B]
          Length = 1244

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 149/429 (34%), Positives = 243/429 (56%), Gaps = 21/429 (4%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E  +D  LS Y  ++LDE HER +  D L  ++K ++    + K+I+ SAT++ E F TY
Sbjct: 689  ETLSDTMLSKYSFIILDEAHERTISTDILFCLLKDVVKRRPDFKLIVTSATLDAEKFSTY 748

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   + I  +PG+++P+++ +    E D  ++        I +L+I   ++P    GD+L
Sbjct: 749  FFN-SPIFTIPGKIFPVEILHSKEPESDYVEA------CLITVLNIHLNEHP----GDIL 797

Query: 430  IFMSGISEISSIVRAAQEYNEKSQGW-----IVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI++      E  +K +       I+LP++S+L  E Q  +F  AP+G RKC+
Sbjct: 798  VFLTGQDEINTACEILHERMKKLESMSPPPLIILPIYSSLPSEMQSVIFDPAPQGCRKCV 857

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAE S+TIDGI FV+D G  K   YD    M +L    ISKA+A+QR GRAGRTGP
Sbjct: 858  LATNIAEASLTIDGIFFVIDPGFCKIRKYDSKRDMDSLVVAPISKANAKQRAGRAGRTGP 917

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E+ Y + +AE S PEI+R+++ S +L L  +G+ D   F F+++P  + +  
Sbjct: 918  GKCYRLYTEDAYKNEMAETSIPEIQRINLGSTVLLLKALGVNDFLHFDFMDSPSVDTLIH 977

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            S+ +L   GA+D    +T LG+ +S+ P++  L K+L+    F+  D V+++ ++LSVQ+
Sbjct: 978  SLENLYYLGALDDNGYLTKLGKKMSNFPMEPNLSKILLTSINFNCADDVVTIVSMLSVQN 1037

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD +T LN Y +W    ++   S  WC    I  +  
Sbjct: 1038 IFYRPQNKALLADKKKNKFLMPQGDLITYLNIYNKW----RENNYSNYWCHENFIHSRAL 1093

Query: 724  YEVTKLRSQ 732
                 +R Q
Sbjct: 1094 KRSQDVRKQ 1102



 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EW+   + YL           M + E +  LP+   K++++  + K  V+I+ G+TG GK
Sbjct: 558 EWR---KNYLHNNISIGVKNPMPVNEQRAKLPIYHLKKDLMKAIAKNNVLIVIGETGSGK 614

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQIPQYL +A +     + CTQPRR+A +S++KRV+ E        VGY IRF+     
Sbjct: 615 TTQIPQYLHEANYTDKGIVGCTQPRRVAAMSIAKRVSEEFGCILGQEVGYSIRFDDCTSN 674

Query: 125 KTKIVFITEGLLLRQ 139
            T I ++T+G+LLR+
Sbjct: 675 DTIIKYLTDGMLLRE 689



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 73/117 (62%), Gaps = 1/117 (0%)

Query: 808  SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
             RTGPG CYRLY+E+ Y + +AE S PEI+R+++ S +L L  +G+ D   F F+++P  
Sbjct: 913  GRTGPGKCYRLYTEDAYKNEMAETSIPEIQRINLGSTVLLLKALGVNDFLHFDFMDSPSV 972

Query: 867  ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +  S+ +L   GA+D    +T LG+ +S+ P++  L K+L+    F+  D ++ +
Sbjct: 973  DTLIHSLENLYYLGALDDNGYLTKLGKKMSNFPMEPNLSKILLTSINFNCADDVVTI 1029



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            +  +D  LS Y  ++LDE HER +  D L  ++K ++    + K+I+ SAT++ E F TY
Sbjct: 689  ETLSDTMLSKYSFIILDEAHERTISTDILFCLLKDVVKRRPDFKLIVTSATLDAEKFSTY 748

Query: 1175 F 1175
            F
Sbjct: 749  F 749


>gi|355683893|gb|AER97226.1| DEAH box polypeptide 8 [Mustela putorius furo]
          Length = 1221

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 670  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 729

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 730  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 778

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 779  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 837

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 838  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 897

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 898  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 957

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 958  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1017

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1018 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1073

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1074 RRAQDIR---KQMLG 1085



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 531 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 588

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 589 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 648

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 649 FEDCTSPETVIKYMTDGMLLRE 670



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 894  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 953

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 954  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1009



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 674  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 730


>gi|56699440|ref|NP_659080.2| ATP-dependent RNA helicase DHX8 [Mus musculus]
 gi|187471036|sp|A2A4P0.1|DHX8_MOUSE RecName: Full=ATP-dependent RNA helicase DHX8; AltName: Full=DEAH box
            protein 8
 gi|124376748|gb|AAI32446.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus]
 gi|148702118|gb|EDL34065.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus]
          Length = 1244

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 693  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 752

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 753  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 801

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 802  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 860

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 861  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 920

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 921  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 980

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 981  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1040

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1041 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1096

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1097 RRAQDIR---KQMLG 1108



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 554 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 611

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 612 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 671

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 672 FEDCTSPETVIKYMTDGMLLRE 693



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 917  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 976

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 977  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1032



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 697  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 753


>gi|145351945|ref|XP_001420320.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580554|gb|ABO98613.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 811

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 229/365 (62%), Gaps = 12/365 (3%)

Query: 412 ILSIIDKKYPRTERGDVLIFMSGISEISSIV-RAAQEYNEKSQGWIVLPLHSTLSLEEQD 470
           ++++I  +Y   E G +LIF+ G++EI ++  R      +    ++++PLHSTLS EEQ 
Sbjct: 302 LVALIADEY---EEGAILIFLPGMAEIRTLHDRLRANLKDSESRFLLIPLHSTLSSEEQR 358

Query: 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKA 530
             F+ AP G RK +++TNIAETSITID + FV+DSG+V+E  YD  ++MS L   W SKA
Sbjct: 359 LTFNKAPPGKRKVVMATNIAETSITIDDVVFVIDSGRVRETQYDPVSRMSALVTAWCSKA 418

Query: 531 SAEQRKGRAGRTGPGVCYRLYS-EEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRK 589
           S+ QR+GRAGR   G C+ LYS + + ++LA+++TPEI R  +D+L L +  +GLGD+RK
Sbjct: 419 SSRQRRGRAGRVREGYCFHLYSTKTEATVLADFTTPEILRTPLDALCLQIKILGLGDIRK 478

Query: 590 F--PFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 647
           F    +E PP   I S+++SL +  A+DSK+ +T+LG  L++LPVD  LGKM+++G+MF 
Sbjct: 479 FLSMAIEPPPEGAIASALKSLHELDAVDSKDELTALGHHLAELPVDARLGKMMLYGAMFS 538

Query: 648 QIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVK-KDR 706
            +D +L++AA +  +SPF     +  + + A++++ +   D LT++ AY  W+  + K R
Sbjct: 539 CLDPILTIAAGVGFRSPFLAPMDKRDEADAAKRKIAAQASDHLTLVRAYAGWIHARAKGR 598

Query: 707 VRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIK 766
              + +  +  +  Q   +++++R Q+  +L   G +    G   ++S    A+  G   
Sbjct: 599 GFERDYLSKLFLSGQTLKQISEMRQQYTDLLDQIGFLRSGAGALGAVS----AVNAGNES 654

Query: 767 LLQAI 771
           L++A+
Sbjct: 655 LVRAV 659



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 83/124 (66%), Gaps = 3/124 (2%)

Query: 809 RTGPGVCYRLYSEE-QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPP 865
           R   G C+ LYS + + ++LA+++TPEI R  +D+L L +  +GLGD+RKF    +E PP
Sbjct: 429 RVREGYCFHLYSTKTEATVLADFTTPEILRTPLDALCLQIKILGLGDIRKFLSMAIEPPP 488

Query: 866 AENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
              I S+++SL +  A+DSK+ +T LG  L++LPVD  LGKM+++G+MF  +D +L +  
Sbjct: 489 EGAIASALKSLHELDAVDSKDELTALGHHLAELPVDARLGKMMLYGAMFSCLDPILTIAA 548

Query: 926 ALNF 929
            + F
Sbjct: 549 GVGF 552



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 7/125 (5%)

Query: 22  KEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ---- 77
           KE     + ++E +  LP    K  +++ +      +++G TGCGK+TQ+PQ++ +    
Sbjct: 10  KESTKEWLGMQEIRRKLPAHNLKSVVLEAIESSNAAVVSGATGCGKTTQVPQFIFEEAIR 69

Query: 78  ---AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEG 134
              AG   I  TQPRR++ I++++RVA E   +  + VGY IR E  + EKT+++F T G
Sbjct: 70  AGKAGDTSIIITQPRRLSAIAVAERVANERCERIGDTVGYSIRLESKQSEKTRMLFCTTG 129

Query: 135 LLLRQ 139
           +LLR+
Sbjct: 130 ILLRR 134



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 124/301 (41%), Gaps = 43/301 (14%)

Query: 1031 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEEE 1086
            A+DSK+ +T+LG  L++LPVD  LGKM+++G+MF  +D +L +   +     F+   ++ 
Sbjct: 504  AVDSKDELTALGHHLAELPVDARLGKMMLYGAMFSCLDPILTIAAGVGFRSPFLAPMDKR 563

Query: 1087 EEEEAGERLESMDANEVEFRLKHDPKQVQVAADN--FLSSYDVLVLDEIHERHLHGDFLL 1144
            +E +A +R                 K    A+D+   + +Y   +      R    D+L 
Sbjct: 564  DEADAAKR-----------------KIAAQASDHLTLVRAYAGWIHARAKGRGFERDYL- 605

Query: 1145 GVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVTILKVILASG 1204
               K  L      +I  M       L    F R     L   +A +  + ++++ ++ +G
Sbjct: 606  --SKLFLSGQTLKQISEMRQQYTDLLDQIGFLRSGAGALGAVSAVNAGNESLVRAVICAG 663

Query: 1205 LYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLK 1264
            LYP VA+            A     D    S +P S        +R   D  V   P   
Sbjct: 664  LYPNVALAS----------APAKTDDGRARSRYPTSSV-----AVRTKHDTDVHMHPTSV 708

Query: 1265 LPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSW 1324
              G +  S   + L+Y   + T+K ++ +   + +   LLLF   I  N + +    D+W
Sbjct: 709  CYGMSP-SVDSRFLLYHEKVRTTKVYIRDATAVGSYP-LLLFGGKIKINHERSSATCDNW 766

Query: 1325 I 1325
            I
Sbjct: 767  I 767



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 4/77 (5%)

Query: 314 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
           D  L+    +V+DE+HER L  DFLL +++ L    ++  ++ MSAT+N +LF  YF   
Sbjct: 138 DPNLTGVSHVVVDEVHERDLLSDFLLVILRSLAARRSDFHLVAMSATVNADLFKNYFESH 197

Query: 374 AK----IIKVPGRLYPI 386
            K    ++++PGR +P+
Sbjct: 198 LKTTCPVVEIPGRTFPV 214



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 36/49 (73%)

Query: 981  AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNF 1029
            A+DSK+ +T+LG  L++LPVD  LGKM+++G+MF  +D +L +   + F
Sbjct: 504  AVDSKDELTALGHHLAELPVDARLGKMMLYGAMFSCLDPILTIAAGVGF 552



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 1106 RLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 1165
            RL+ DP          L+    +V+DE+HER L  DFLL +++ L    ++  ++ MSAT
Sbjct: 134  RLQTDPN---------LTGVSHVVVDEVHERDLLSDFLLVILRSLAARRSDFHLVAMSAT 184

Query: 1166 INIELFHTYF 1175
            +N +LF  YF
Sbjct: 185  VNADLFKNYF 194


>gi|329663394|ref|NP_001193020.1| ATP-dependent RNA helicase DHX8 [Bos taurus]
 gi|296476265|tpg|DAA18380.1| TPA: DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Bos taurus]
          Length = 1218

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 667  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 726

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 727  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 775

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 776  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 834

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 835  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 894

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 895  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 954

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 955  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1014

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1015 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1070

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1071 RRAQDIR---KQMLG 1082



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 528 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 585

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 586 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 645

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 646 FEDCTSPETVIKYMTDGMLLRE 667



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 891  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 950

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 951  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1006



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 671  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 727


>gi|453088740|gb|EMF16780.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Mycosphaerella populorum SO2202]
          Length = 676

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 246/451 (54%), Gaps = 31/451 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  LS Y V+++DE HER L  D LLGV+K +L   +++KII+ SAT++ + F  +
Sbjct: 110 EALVDPLLSRYAVIMVDEAHERSLSSDVLLGVLKKVLKRRSDLKIIVSSATLHAQRFLDF 169

Query: 370 FNRIA------------KIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID 417
           F   A             I+ + GR +P+ + Y     L +   + L+     R  S++ 
Sbjct: 170 FGGAAILGNEENKSPNTCIVSIEGRAHPVDIHY-----LAQPCEQYLE-----RAASLVF 219

Query: 418 KKYPRTERGDVLIFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVF 473
             +     GDVLIF++G  EI  ++    +        SQG + LPL++ LS E+Q  VF
Sbjct: 220 DIHSSEPDGDVLIFLTGRDEIEKVIEIIADRLPSLPAGSQGILPLPLYAGLSTEQQMYVF 279

Query: 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAE 533
             APE  RK I +TNIAE S+TIDGI +V+D G VK  +Y+ T  + TL    +S+ASA 
Sbjct: 280 EPAPENTRKVICATNIAEASVTIDGIVYVIDCGFVKLRAYNPTTGIETLATTPVSRASAT 339

Query: 534 QRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFL 593
           QR GRAGRT PG CYRLY+E  +  L E + PEI+R ++  ++L L  +G+ ++ +F FL
Sbjct: 340 QRAGRAGRTKPGKCYRLYTENDFHSLEEATIPEIQRSNLAPMILQLKALGIDNIARFDFL 399

Query: 594 EAPPAENIESSVRSLTQHGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTV 652
             PPAE I  ++  L   GA+D   ++T+ LG  ++DL ++  L K L+    F  +  +
Sbjct: 400 TPPPAELIIRALELLFSLGALDDYAKLTTPLGTRMADLALEPMLAKCLLSAPSFGCLSEM 459

Query: 653 LSLAAVLSVQSPFTNRAFRDPDCE-TARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKK 711
           L++AA++S+Q             E TAR++     GD LT+LN Y  ++   K   +  +
Sbjct: 460 LTIAAMVSLQGKIWFSTHEKTSSEKTARRKFAVEEGDHLTLLNVYHAFITKGK---KESR 516

Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
           WC++  +  Q       +R+Q ++ L   G+
Sbjct: 517 WCQQHALNFQSMIRAVSIRNQLRRYLERLGI 547



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT PG CYRLY+E  +  L E + PEI+R ++  ++L L  +G+ ++ +F FL  PPAE 
Sbjct: 347 RTKPGKCYRLYTENDFHSLEEATIPEIQRSNLAPMILQLKALGIDNIARFDFLTPPPAEL 406

Query: 869 IESSVRSLTQHGAIDSKERVTT-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I  ++  L   GA+D   ++TT LG  ++DL ++  L K L+    F  +  ML +
Sbjct: 407 IIRALELLFSLGALDDYAKLTTPLGTRMADLALEPMLAKCLLSAPSFGCLSEMLTI 462



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 61/102 (59%), Gaps = 9/102 (8%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLS 97
           LP+A+++  ++  V + +V ++ G TG GK+TQ+PQYL QAG+    C+  + IA     
Sbjct: 18  LPIARHRDALLYAVEEHQVTVLIGQTGSGKTTQLPQYLDQAGW----CSDGKLIAVAQ-- 71

Query: 98  KRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
              AYE        VGY IRFE    E T+I F+T+GLLLR+
Sbjct: 72  ---AYEMGCPLGQAVGYSIRFEDVTSETTRIKFLTDGLLLRE 110



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 40/61 (65%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  LS Y V+++DE HER L  D LLGV+K +L   +++KII+ SAT++ + F  +F   
Sbjct: 114  DPLLSRYAVIMVDEAHERSLSSDVLLGVLKKVLKRRSDLKIIVSSATLHAQRFLDFFGGA 173

Query: 1179 A 1179
            A
Sbjct: 174  A 174


>gi|197102406|ref|NP_001126950.1| ATP-dependent RNA helicase DHX8 [Pongo abelii]
 gi|55733262|emb|CAH93314.1| hypothetical protein [Pongo abelii]
          Length = 1127

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 240/435 (55%), Gaps = 25/435 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D+ L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 576 ECLIDSDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 635

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 636 FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 684

Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 685 VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 743

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 744 IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 803

Query: 545 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 804 GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 863

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
           ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 864 AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 923

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
            F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 924 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 979

Query: 724 YEVTKLRSQFKQVLG 738
                +R   KQ+LG
Sbjct: 980 RRAQDIR---KQMLG 991



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 437 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 494

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 495 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 554

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 555 FEDCTSPETVIKYMTDGMLLRE 576



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 800 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 859

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 860 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 915



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 37/57 (64%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D+ L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 580  DSDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 636


>gi|292488321|ref|YP_003531203.1| ATP-dependent helicase HrpA [Erwinia amylovora CFBP1430]
 gi|292899519|ref|YP_003538888.1| ATP-dependent helicase [Erwinia amylovora ATCC 49946]
 gi|428785261|ref|ZP_19002752.1| ATP-dependent helicase HrpA [Erwinia amylovora ACW56400]
 gi|291199367|emb|CBJ46484.1| ATP-dependent helicase [Erwinia amylovora ATCC 49946]
 gi|291553750|emb|CBA20795.1| ATP-dependent helicase HrpA [Erwinia amylovora CFBP1430]
 gi|426276823|gb|EKV54550.1| ATP-dependent helicase HrpA [Erwinia amylovora ACW56400]
          Length = 1299

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 246/445 (55%), Gaps = 26/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 180 AEIQQDRLLLQYDTIIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A +I+V GR YP+++ Y P+VE    +++  D      I   +D+   R  RGD+
Sbjct: 240 HFHN-APVIEVSGRTYPVEVRYRPVVE----EADDSDRDQLQAIFDAVDE-LGRESRGDI 293

Query: 429 LIFMSGISEI----SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           LIFMSG  EI     ++++    + E      VLPL++ LS  EQ+RVF    +  R+ +
Sbjct: 294 LIFMSGEREIRDTADALIKRDLPHTE------VLPLYARLSNAEQNRVFQSHAD--RRIV 345

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   
Sbjct: 346 LATNVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEAISQASANQRKGRCGRVSE 405

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G+C RLY+E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  
Sbjct: 406 GICIRLYAEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDISAFPFVEAPDRRNIQDG 465

Query: 605 VRSLTQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           VR L + GAI    +   R+T  GR L+ LPVD  L KM++    F  +   + + A LS
Sbjct: 466 VRLLEELGAITLADNHHYRLTPSGRALAQLPVDPRLAKMVLEAQKFGCVREAMIITAALS 525

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P    A +    +   +       D +  +N +  WL  ++  + S   ++ CK   
Sbjct: 526 IQDPRERPADKKQASDEKHQRFADKESDFIAFVNLWN-WLQEQQKALSSSQFRRQCKADY 584

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + GL
Sbjct: 585 LNYLRVREWQDIYTQLRQVVRELGL 609



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLY+E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYAEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDISAFPFVEAPDRR 460

Query: 868 NIESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI+  VR L + GAI    +   R+T  GR L+ LPVD  L KM++    F  +   +++
Sbjct: 461 NIQDGVRLLEELGAITLADNHHYRLTPSGRALAQLPVDPRLAKMVLEAQKFGCVREAMII 520

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 521 TAALSIQ--DPRER 532



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 71/110 (64%), Gaps = 4/110 (3%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQ 87
           IR  +N LPV+Q KQEI + +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQ
Sbjct: 71  IRYPEN-LPVSQKKQEIANAIRTSQVVIVAGETGSGKTTQLPKICLELGRGIRGLIGHTQ 129

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           PRR+A  ++++R+A E        VGY++RF  H  + T++  +T+G+LL
Sbjct: 130 PRRLAARTVAERIAAELEISLGGCVGYKVRFNDHVGDTTQVKLMTDGILL 179



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 180  AEIQQDRLLLQYDTIIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 240  HFHNAPVIEVSGRT 253


>gi|402900442|ref|XP_003913184.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX8
            [Papio anubis]
          Length = 1226

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 675  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 734

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 735  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 783

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 784  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 842

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 843  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 902

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 903  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 962

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 963  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1022

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1023 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1078

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1079 RRAQDIR---KQMLG 1090



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 536 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 593

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 594 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 653

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 654 FEDCTSPETVIKYMTDGMLLRE 675



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 899  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 958

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 959  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1014



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 679  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 735


>gi|119572064|gb|EAW51679.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_d [Homo
           sapiens]
          Length = 945

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 394 ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 453

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 454 FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 502

Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 503 VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 561

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 562 IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 621

Query: 545 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 622 GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 681

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
           ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 682 AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 741

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
            F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 742 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 797

Query: 724 YEVTKLRSQFKQVLG 738
                +R   KQ+LG
Sbjct: 798 RRAQDIR---KQMLG 809



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 255 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 312

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 313 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 372

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 373 FEDCTSPETVIKYMTDGMLLRE 394



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 618 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 677

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 678 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 733



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 398  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 454


>gi|74209213|dbj|BAE24985.1| unnamed protein product [Mus musculus]
          Length = 1244

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 693  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 752

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 753  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 801

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 802  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 860

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 861  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 920

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 921  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 980

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 981  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1040

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1041 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1096

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1097 RRAQDIR---KQMLG 1108



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 554 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 611

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 612 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 671

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 672 FEDCTSPETVIKYMTDGMLLRE 693



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 917  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 976

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 977  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1032



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 697  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 753


>gi|281212287|gb|EFA86447.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
          Length = 716

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 152/446 (34%), Positives = 247/446 (55%), Gaps = 24/446 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L  Y V++LDE HER L+ D L  +IK +      + I++MSAT++ E+F  Y
Sbjct: 177 EAMIDPMLKRYSVIILDEAHERTLNTDVLFALIKGIQAKRPSLHIVIMSATLDAEMFSRY 236

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI---------IDKKY 420
           FN  A I+ + GR +P+++ Y      + ++ + LD    + +L I          +   
Sbjct: 237 FN-AAPILYIEGRQFPVRIYY-----CEESQKDYLDAA-LVTVLQIHLDVNNGNESNSNE 289

Query: 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEK----SQGWIVLPLHSTLSLEEQDRVFHYA 476
                GD+L+F++G  EI ++ +   E   +    ++  +V P++S +  E+Q +VF  A
Sbjct: 290 DDGNGGDILVFLTGREEIDTLEKLLNERIPRLPSTAKQLLVCPIYSAMPQEQQMKVFERA 349

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I++TNIAETS+TI+GIR+VVD+G VK   Y+    + TL    ISKASA+QR 
Sbjct: 350 PKGTRKVIIATNIAETSLTINGIRYVVDTGVVKSRLYNAKIGIDTLTVIPISKASAQQRT 409

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR  PG CYRLY+E+ ++ L   S PEI+R +I +++L L  +G+ DV  F FLE P
Sbjct: 410 GRAGREFPGQCYRLYTEDTFAKLDHSSIPEIKRSNIANVILQLKTIGIDDVLSFDFLERP 469

Query: 597 PAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLA 656
           P   ++ S+  L    A+D + ++T LG+ +S  P++    K L+    F  ++ V+ + 
Sbjct: 470 PLPTVQKSLEQLYCLDALDKQGKLTDLGKRMSQFPLEPMYSKTLIQSQEFGCVEEVIIII 529

Query: 657 AVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRR 716
           ++LSV+S F     +  + E  +K   S  GD LT+LN ++E+  V  +     +WC   
Sbjct: 530 SMLSVESIFYAPKDKLAEVEAIKKIFFSPEGDHLTLLNVFREYQKVNGNL----QWCYDH 585

Query: 717 GIEEQRFYEVTKLRSQFKQVLGDSGL 742
            I  +   +V  +  Q  +   +S +
Sbjct: 586 FINTKSMVKVVNVFEQLVEYCTNSKI 611



 Score = 93.6 bits (231), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 85/130 (65%), Gaps = 6/130 (4%)

Query: 13  LRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           L+   D K+++K +   +I++ + +LPV   +  +++ + K   V+I  +TG GK+TQIP
Sbjct: 51  LKNETDLKKQQKQN---EIKQQKVNLPVFSARDALLENIRKHPTVVIISETGTGKTTQIP 107

Query: 73  QYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           Q+L + G+ +   IA TQPRR+A IS++KRVA E   +    VGY +RF+    E+TK+ 
Sbjct: 108 QFLREDGWTKNGVIAITQPRRVAAISIAKRVAEEIDVELGKEVGYCVRFDDKTSEQTKLK 167

Query: 130 FITEGLLLRQ 139
           ++T+G+L+R+
Sbjct: 168 YMTDGMLVRE 177



 Score = 80.5 bits (197), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 6/132 (4%)

Query: 807 ESRTG------PGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPF 860
           + RTG      PG CYRLY+E+ ++ L   S PEI+R +I +++L L  +G+ DV  F F
Sbjct: 406 QQRTGRAGREFPGQCYRLYTEDTFAKLDHSSIPEIKRSNIANVILQLKTIGIDDVLSFDF 465

Query: 861 LEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTM 920
           LE PP   ++ S+  L    A+D + ++T LG+ +S  P++    K L+    F  ++ +
Sbjct: 466 LERPPLPTVQKSLEQLYCLDALDKQGKLTDLGKRMSQFPLEPMYSKTLIQSQEFGCVEEV 525

Query: 921 LLLDLALNFGAI 932
           +++   L+  +I
Sbjct: 526 IIIISMLSVESI 537



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            D  L  Y V++LDE HER L+ D L  +IK +      + I++MSAT++ E+F  YFN
Sbjct: 181  DPMLKRYSVIILDEAHERTLNTDVLFALIKGIQAKRPSLHIVIMSATLDAEMFSRYFN 238


>gi|145349553|ref|XP_001419195.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579426|gb|ABO97488.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 989

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 149/428 (34%), Positives = 243/428 (56%), Gaps = 22/428 (5%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L+ Y  +++DE HER LH D L G++K ++    + K+I+ SAT+N E F  +F  +  +
Sbjct: 383 LNMYSCIIMDEAHERSLHTDVLFGILKKVVARRRDFKLIVTSATLNAEKFSNFFGSVP-V 441

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
             +PGR +P+ + Y       +T  E        + L++     P    GD+LIFM+G  
Sbjct: 442 FHIPGRTFPVDILY------SKTPVEDYVEAAVKQALTVHLSSGP----GDILIFMTGQE 491

Query: 437 EISSIVRAAQEYNEK--SQGWI----VLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490
           EI ++    +E  E+  S+G      VLP++S L  + Q ++F  A +G RKCIVSTNIA
Sbjct: 492 EIETVTYTLEERVEQLMSEGTCPPLNVLPIYSQLPSDLQAKIFQDAEDGNRKCIVSTNIA 551

Query: 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRL 550
           ETS+T+DG+ +V+DSG  K   ++    M+ LQ F  ++A+  QR GRAGRTGPG CYRL
Sbjct: 552 ETSLTLDGVMYVIDSGYCKLSVFNPRMGMNALQVFPCAQAAVNQRSGRAGRTGPGTCYRL 611

Query: 551 YSEEQYSLLAEYST-PEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLT 609
           Y+E  +      ST PEI+R ++ +++L L  + + ++  F F++ PP ENI +S+ SL 
Sbjct: 612 YTEMAFKHEMLVSTVPEIQRTNLGNVVLLLKSLNVDNLLDFDFMDPPPQENILNSMYSLW 671

Query: 610 QHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRA 669
             GA+D+   +T LG  + + PVD PL +ML+        + +L++ A+LSV S +    
Sbjct: 672 ILGALDNTGGLTKLGSKMVEFPVDPPLAQMLIKAEETGCSNEMLTVVAMLSVPSVWFRPK 731

Query: 670 FRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKL 729
            R+ + + AR++      D LT+LN Y++W    K+      WC +  I+ +   +  ++
Sbjct: 732 DREEESDAAREKFFVPESDHLTLLNVYQQW----KNNGYRNDWCNKHFIQGKGLKKGREV 787

Query: 730 RSQFKQVL 737
           R+Q   ++
Sbjct: 788 RAQLMDIM 795



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 82/141 (58%), Gaps = 18/141 (12%)

Query: 17  LDFKQKEKFSTLMK---------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAG 61
           +DFK   KF+  MK               I+E +  LPV   +++++  + + ++V++ G
Sbjct: 236 IDFKAGAKFAEHMKGSKASAQSEFAKTKTIKEQREFLPVYGCREDLMHVIRENQIVVVVG 295

Query: 62  DTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRF 118
           +TG GK+TQ+ QY+ + G   F  + CTQPRR+A +S++KRV+ E   +    VGY IRF
Sbjct: 296 ETGSGKTTQMTQYMHEEGYSTFGMVGCTQPRRVAAMSVAKRVSEEMGCELGKEVGYAIRF 355

Query: 119 EKHRREKTKIVFITEGLLLRQ 139
           E      T I ++T+G+LLR+
Sbjct: 356 EDCTGPDTIIKYMTDGVLLRE 376



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYST-PEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG CYRLY+E  +      ST PEI+R ++ +++L L  + + ++  F F++ PP 
Sbjct: 601 GRTGPGTCYRLYTEMAFKHEMLVSTVPEIQRTNLGNVVLLLKSLNVDNLLDFDFMDPPPQ 660

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
           ENI +S+ SL   GA+D+   +T LG  + + PVD PL +ML+
Sbjct: 661 ENILNSMYSLWILGALDNTGGLTKLGSKMVEFPVDPPLAQMLI 703



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L+ Y  +++DE HER LH D L G++K ++    + K+I+ SAT+N E F  +F  +   
Sbjct: 383  LNMYSCIIMDEAHERSLHTDVLFGILKKVVARRRDFKLIVTSATLNAEKFSNFFGSVPVF 442

Query: 1182 LLSGST 1187
             + G T
Sbjct: 443  HIPGRT 448


>gi|71030432|ref|XP_764858.1| RNA helicase [Theileria parva strain Muguga]
 gi|68351814|gb|EAN32575.1| RNA helicase, putative [Theileria parva]
          Length = 619

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 145/433 (33%), Positives = 240/433 (55%), Gaps = 21/433 (4%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E  +D  LS Y ++++DE+HER +  D LLG+IK  L    E+K+I+MSATI+  +F+ +
Sbjct: 110 ESISDPLLSKYSIVIIDEVHERSIRSDILLGIIKLALTKRPELKLIVMSATIDSNVFNEF 169

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   +  I VPGRL+P+ + Y P         E       I +L I       TE GD+L
Sbjct: 170 FQN-SFTINVPGRLFPVDIYYTP------APFEDYIEAAMISVLQI----NLSTETGDIL 218

Query: 430 IFMSGISEISSIVR----AAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F+ G  +I  + R      +  N+  +  ++ PL+S LSLE Q+ VF   P   RK ++
Sbjct: 219 VFLPGQEDIEILERLLKQKVKHLNDSMESLVICPLYSALSLERQNLVFKTTPPKSRKVVL 278

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TNIAETS+TI GI++V+D+G VK+  Y+      +L     SK+SA+QR GRAGR GPG
Sbjct: 279 ATNIAETSLTIPGIKYVIDTGLVKQRKYNPKNNFESLTVNITSKSSAKQRAGRAGREGPG 338

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
             YRLY+ + Y  + + +TPEI  +    + L L  +G+ D+ +FPF++ P    I S+ 
Sbjct: 339 EIYRLYTLDSYEKMPQNTTPEIHLIDFSFVFLQLKMIGVKDIFEFPFIDPPDKGTILSAA 398

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPL-GKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            +L + GA+DS+  +T  G+ ++ +P+ +P+  K+L+    F     +L++ ++LS +  
Sbjct: 399 LNLYRLGALDSEGNLTEAGKMMAQIPL-LPMHSKLLISSFEFSCTSEILTIVSILSSEIA 457

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
             +    +P+    R  L + +GD LT+LN Y  W    ++    + +CK+  +    F 
Sbjct: 458 LFDTEKFNPEGVKLRSNLYNKYGDHLTLLNIYNLW----ENANSRETFCKQFAVNNHAFN 513

Query: 725 EVTKLRSQFKQVL 737
               +R+Q   ++
Sbjct: 514 RAKDIRNQLVSII 526



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 3/106 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           SLP+   K  I + + + + +I+ G TG GKST +P +L  +     Q++  TQPRR+A 
Sbjct: 5   SLPINLVKDLIFEKIKENQCLILVGSTGSGKSTSVPLWLYTSFTNPKQKLVVTQPRRVAA 64

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           ISL+K VA  T ++    VG+ +RF     E T+I ++T+G+L+R+
Sbjct: 65  ISLAKYVANLTNTELGTTVGFNVRFLNKSNESTRIKYVTDGILMRE 110



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 61/105 (58%), Gaps = 1/105 (0%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R GPG  YRLY+ + Y  + + +TPEI  +    + L L  +G+ D+ +FPF++ P    
Sbjct: 334 REGPGEIYRLYTLDSYEKMPQNTTPEIHLIDFSFVFLQLKMIGVKDIFEFPFIDPPDKGT 393

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSM 913
           I S+  +L + GA+DS+  +T  G+ ++ +P+ +P+   L+  S 
Sbjct: 394 ILSAALNLYRLGALDSEGNLTEAGKMMAQIPL-LPMHSKLLISSF 437



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 41/58 (70%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            +D  LS Y ++++DE+HER +  D LLG+IK  L    E+K+I+MSATI+  +F+ +F
Sbjct: 113  SDPLLSKYSIVIIDEVHERSIRSDILLGIIKLALTKRPELKLIVMSATIDSNVFNEFF 170


>gi|426238133|ref|XP_004013012.1| PREDICTED: ATP-dependent RNA helicase DHX8 [Ovis aries]
          Length = 1216

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 665  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 724

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 725  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 773

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 774  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 832

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 833  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 892

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 893  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 952

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 953  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1012

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1013 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1068

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1069 RRAQDIR---KQMLG 1080



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 526 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 583

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 584 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 643

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 644 FEDCTSPETVIKYMTDGMLLRE 665



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 889  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 948

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 949  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1004



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 669  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 725


>gi|73965615|ref|XP_537627.2| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 1 [Canis lupus
            familiaris]
          Length = 1216

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 665  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 724

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 725  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 773

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 774  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 832

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 833  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 892

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 893  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 952

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 953  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1012

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1013 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1068

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1069 RRAQDIR---KQMLG 1080



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 526 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 583

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 584 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 643

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 644 FEDCTSPETVIKYMTDGMLLRE 665



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 889  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 948

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 949  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1004



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 669  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 725


>gi|422008623|ref|ZP_16355607.1| ATP-dependent RNA helicase HrpA [Providencia rettgeri Dmel1]
 gi|414095096|gb|EKT56759.1| ATP-dependent RNA helicase HrpA [Providencia rettgeri Dmel1]
          Length = 1299

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 162/494 (32%), Positives = 263/494 (53%), Gaps = 33/494 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176 AELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPRRPDLKVIITSATIDPERFSK 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRTERG 426
           +FN  A I++V GR YP+++ Y PI+  D+  S++       +I  IID   +      G
Sbjct: 236 HFNH-APIVEVSGRTYPVEVRYRPIMG-DQNDSDR------DQIDGIIDAVNELSVEGNG 287

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFMSG  EI     A  + + +     +LPL + LS  EQ+R+FH  P G R+ I++
Sbjct: 288 DILIFMSGEREIRDTADALSKLSLRHTE--ILPLFARLSNSEQNRIFH--PHGGRRIILA 343

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D+G  +   Y    K+  L    IS+ASA QRKGR GR   G+
Sbjct: 344 TNVAETSLTVPGIKYVIDTGYARISRYSYRTKVQRLPVEAISQASANQRKGRCGRVSDGI 403

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V+
Sbjct: 404 CIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTSIGLGDISAFPFVEAPDKRNIQDGVK 463

Query: 607 SLTQHGAIDSKE------RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            L + G I S +      ++T  GR L+ LPVD  L +M++       +   + + + LS
Sbjct: 464 LLEELGTIKSHKQADKGYQLTDTGRQLAQLPVDPRLARMVIEARKHGAVRETMVIVSALS 523

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  LN + ++L  ++ ++ +   +K C++  
Sbjct: 524 IQDPRERPLDKQQAADEKHRRFHDKQSDFLAFLNLW-DYLKEQQTQLSNAQFRKMCRQDF 582

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   L +Q +QV  + G          +++S E   R   + LL  +     +
Sbjct: 583 LNYLRIREWQDLYTQLRQVAKEQGF---------AINSSEADFRSIHVSLLAGLLSHIGQ 633

Query: 778 EAPKRRKMLKADNA 791
           +   + +   A NA
Sbjct: 634 KDADKHEFTGARNA 647



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           ++LPV+Q K+ I+D + K +VVI+AG+TG GK+TQIP+  ++ G      I  TQPRR+A
Sbjct: 71  DNLPVSQKKEVILDAIKKHQVVIVAGETGSGKTTQIPKICLELGRGVLGFIGHTQPRRLA 130

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             S++ R+A E   +  + VGY++RF     E T++  +T+G+LL
Sbjct: 131 ARSVATRLAQELECELGSNVGYKVRFSDQVSETTQVKLMTDGILL 175



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 8/135 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 398 RVSDGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTSIGLGDISAFPFVEAPDKRN 457

Query: 869 IESSVRSLTQHGAIDSKE------RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           I+  V+ L + G I S +      ++T  GR L+ LPVD  L +M++       +   ++
Sbjct: 458 IQDGVKLLEELGTIKSHKQADKGYQLTDTGRQLAQLPVDPRLARMVIEARKHGAVRETMV 517

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 518 IVSALSIQ--DPRER 530



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176  AELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPRRPDLKVIITSATIDPERFSK 235

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 236  HFNHAPIVEVSGRT 249


>gi|242012723|ref|XP_002427077.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16, putative
            [Pediculus humanus corporis]
 gi|212511335|gb|EEB14339.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp16, putative
            [Pediculus humanus corporis]
          Length = 1186

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 151/432 (34%), Positives = 238/432 (55%), Gaps = 33/432 (7%)

Query: 317  LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
            L +Y  +++DE HER L  D L G+++ ++    ++K+I+ SAT++   F T+F  +   
Sbjct: 606  LDNYSAIIMDEAHERSLSTDVLFGLLREIIARRHDLKLIVTSATMDAGKFSTFFGNVPSF 665

Query: 377  IKVPGRLYPIQLEY--HPI-----VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
              +PGR +P++L +  +P+       + +T    L P P                 GD+L
Sbjct: 666  T-IPGRTFPVELFFSKNPVEDYVDAAVKQTLQIHLQPTP-----------------GDIL 707

Query: 430  IFMSGISEISSIVRAAQEY---NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
            IFM G  +I        E     + +    VLP++S L  + Q ++F  + EGLRKCIV+
Sbjct: 708  IFMPGQEDIEVTCEVLSERLGEIDNAPQLSVLPIYSQLPSDLQAKIFQKSTEGLRKCIVA 767

Query: 487  TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
            TNIAETS+T+DGI FVVDSG  K   Y+    M  LQ + IS+A++ QR GRAGRTGPG 
Sbjct: 768  TNIAETSLTVDGIMFVVDSGYCKLKVYNPRIGMDALQIYPISQANSNQRSGRAGRTGPGH 827

Query: 547  CYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
            CYRLY+E QY   L   + PEI+R ++ + +L L  +G+ D+ +F F++ PP +NI +S+
Sbjct: 828  CYRLYTERQYKEELLITTVPEIQRTNLANTVLLLKSLGVQDLLQFHFMDPPPQDNILNSL 887

Query: 606  RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
              L   GA+D    +TSLGR +++ P+D P  +ML+  +       +L + ++LSV S F
Sbjct: 888  YQLWILGALDHTGTLTSLGRQMAEFPLDPPQCQMLIVANKMECTAEILIIVSMLSVPSIF 947

Query: 666  TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYE 725
                 R+ + ++ R++ +    D LT LN Y +W    K    S  WC    I  +   +
Sbjct: 948  YRPKGREDEADSVREKFQVPESDHLTYLNVYNQW----KQNHYSSNWCNEHFIHIKAMRK 1003

Query: 726  VTKLRSQFKQVL 737
            V ++R Q K ++
Sbjct: 1004 VREVRQQLKDIM 1015



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 82/139 (58%), Gaps = 17/139 (12%)

Query: 18  DFKQKEKFSTLMK--------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDT 63
           D+K   KF+  MK              I + +  LPV   +QE+++ + +  +VII G+T
Sbjct: 461 DYKTDHKFAQHMKDKSEATSDFAKKKSILQQRQYLPVFAVRQELLNVIRENNIVIIIGET 520

Query: 64  GCGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
           G GK+TQ+ QYL + G+ +   I CTQPRR+A +S++KRV+ E  +     VGY IRFE 
Sbjct: 521 GSGKTTQLTQYLHEEGYSKYGMIGCTQPRRVAAMSVAKRVSDEMGTALGEEVGYAIRFED 580

Query: 121 HRREKTKIVFITEGLLLRQ 139
              E T I ++T+G+LLR+
Sbjct: 581 CTSENTVIKYMTDGILLRE 599



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 76/125 (60%), Gaps = 1/125 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E QY   L   + PEI+R ++ + +L L  +G+ D+ +F F++ PP +
Sbjct: 822 RTGPGHCYRLYTERQYKEELLITTVPEIQRTNLANTVLLLKSLGVQDLLQFHFMDPPPQD 881

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           NI +S+  L   GA+D    +T+LGR +++ P+D P  +ML+  +       +L++   L
Sbjct: 882 NILNSLYQLWILGALDHTGTLTSLGRQMAEFPLDPPQCQMLIVANKMECTAEILIIVSML 941

Query: 928 NFGAI 932
           +  +I
Sbjct: 942 SVPSI 946



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 39/66 (59%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L +Y  +++DE HER L  D L G+++ ++    ++K+I+ SAT++   F T+F  +   
Sbjct: 606  LDNYSAIIMDEAHERSLSTDVLFGLLREIIARRHDLKLIVTSATMDAGKFSTFFGNVPSF 665

Query: 1182 LLSGST 1187
             + G T
Sbjct: 666  TIPGRT 671


>gi|281354218|gb|EFB29802.1| hypothetical protein PANDA_008429 [Ailuropoda melanoleuca]
          Length = 1219

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 668  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 727

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 728  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 776

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 777  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 835

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 836  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 895

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 896  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 955

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 956  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1015

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1016 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1071

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1072 RRAQDIR---KQMLG 1083



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 529 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 586

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 587 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 646

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 647 FEDCTSPETVIKYMTDGMLLRE 668



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 892  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 951

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 952  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1007



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 672  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 728


>gi|119572065|gb|EAW51680.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_e [Homo
            sapiens]
          Length = 1169

 Score =  253 bits (647), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 669  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 728

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 729  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 777

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 778  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 836

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 837  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 896

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 897  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 956

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 957  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1016

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1017 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1072

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1073 RRAQDIR---KQMLG 1084



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 530 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 587

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 588 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 647

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 648 FEDCTSPETVIKYMTDGMLLRE 669



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 893  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 952

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 953  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1008



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 673  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 729


>gi|327275335|ref|XP_003222429.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 1 [Anolis
            carolinensis]
          Length = 1186

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 635  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 694

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 695  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 743

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 744  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 802

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 803  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 862

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 863  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 922

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 923  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 982

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 983  VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1038

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1039 RRAQDIR---KQMLG 1050



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 83/142 (58%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T + I E + SLP+ + K ++I  V   +++I+ 
Sbjct: 496 MMPNDIPEWKK--HAFGGNKASYGKKTQLSIIEQRESLPIFRLKDQLIQAVHDNQILIVI 553

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 554 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 613

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 614 FEDCTSPETVIKYMTDGMLLRE 635



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 859 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 918

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 919 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 974



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 639  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 695


>gi|351707830|gb|EHB10749.1| ATP-dependent RNA helicase DHX8 [Heterocephalus glaber]
          Length = 1223

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 672  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 731

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 732  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 780

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 781  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 839

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 840  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 899

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 900  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 959

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 960  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1019

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1020 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1075

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1076 RRAQDIR---KQMLG 1087



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 5/140 (3%)

Query: 3   PALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGD 62
           P+   EWK     +   K      T + I E +  LP+ + K +++  V   +++I+ G+
Sbjct: 535 PSDIPEWKK--HAFGGNKASYGKKTQLSIVEQREGLPIYRLKGQLVQAVHDNQILIVIGE 592

Query: 63  TGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE 119
           TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IRFE
Sbjct: 593 TGDGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFE 652

Query: 120 KHRREKTKIVFITEGLLLRQ 139
                +T I ++T+G+LLR+
Sbjct: 653 DCTSPETVIKYMTDGMLLRE 672



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 896  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 955

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 956  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1011



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 676  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 732


>gi|301768709|ref|XP_002919800.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Ailuropoda
            melanoleuca]
          Length = 1253

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 702  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 761

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 762  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 810

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 811  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 869

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 870  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 929

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 930  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 989

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 990  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1049

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1050 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1105

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1106 RRAQDIR---KQMLG 1117



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 563 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 620

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 621 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 680

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 681 FEDCTSPETVIKYMTDGMLLRE 702



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 926  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 985

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 986  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1041



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 706  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 762


>gi|380810164|gb|AFE76957.1| ATP-dependent RNA helicase DHX8 [Macaca mulatta]
 gi|383416211|gb|AFH31319.1| ATP-dependent RNA helicase DHX8 [Macaca mulatta]
 gi|384945580|gb|AFI36395.1| ATP-dependent RNA helicase DHX8 [Macaca mulatta]
          Length = 1222

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 671  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 730

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 731  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 779

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 780  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 838

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 839  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 898

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 899  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 958

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 959  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1018

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1019 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1074

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1075 RRAQDIR---KQMLG 1086



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 532 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 589

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 590 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 649

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 650 FEDCTSPETVIKYMTDGMLLRE 671



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 895  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 954

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 955  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1010



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 675  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 731


>gi|327275337|ref|XP_003222430.1| PREDICTED: ATP-dependent RNA helicase DHX8-like isoform 2 [Anolis
            carolinensis]
          Length = 1180

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 629  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 688

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 689  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 737

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 738  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 796

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 797  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 856

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 857  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 916

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 917  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 976

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 977  VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1032

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1033 RRAQDIR---KQMLG 1044



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 83/142 (58%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T + I E + SLP+ + K ++I  V   +++I+ 
Sbjct: 490 MMPNDIPEWKK--HAFGGNKASYGKKTQLSIIEQRESLPIFRLKDQLIQAVHDNQILIVI 547

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 548 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 607

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 608 FEDCTSPETVIKYMTDGMLLRE 629



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 853 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 912

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 913 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 968



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 633  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 689


>gi|294893316|ref|XP_002774411.1| ATP-dependent RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239879804|gb|EER06227.1| ATP-dependent RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 735

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 251/450 (55%), Gaps = 24/450 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   DN LS Y+V++LDE HER L  D L G++K +L +  ++K+++MSAT+  E F  Y
Sbjct: 174 EAQLDNKLSRYNVIMLDEAHERTLATDVLFGLLKEILPNRPDLKVVVMSATLEAEAFGKY 233

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A ++KVPGR YP+++ Y P  + D  +S        ++ +  I  + P    GD+L
Sbjct: 234 FYN-APLLKVPGRTYPVEIFYSPESQKDYFESA-------VQTVVYIHTEEP-AGSGDIL 284

Query: 430 IFMSGISEISSI---VRAAQEYNEKSQG-WIVLPLHSTLSLEEQDRVFHYAP----EGL- 480
           +F++G  EI +    +R A     +  G  +V+PL+S+L   +Q ++F  AP    EG  
Sbjct: 285 LFLTGEEEIENACKQLRTASMRTMREHGELLVVPLYSSLPPRQQQKIFEEAPPPRYEGGP 344

Query: 481 --RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
             RK +V+TN+AETSITIDGI +VVD G  K+  ++   +M +L    IS+ASA+QR GR
Sbjct: 345 PGRKVVVATNVAETSITIDGIVYVVDPGFSKQKVFNPRTRMESLLVSPISQASAQQRAGR 404

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
           AGRT PG C+RLY+E  Y  L   + PEI R ++ S++L+L  +G+ D+  F F++ P  
Sbjct: 405 AGRTRPGKCFRLYTENAYGDLQPSTFPEILRSNLSSVVLTLKKLGIDDLVHFDFMDPPAP 464

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
           E +  ++ +L   GA+D +  +T  GR ++D PV+  +  +L+    FH  +  +++ A+
Sbjct: 465 ETMMRALETLVYLGALDEEGDLTEFGRTMADFPVEPQMAAVLLRSGRFHCTEEAITIIAM 524

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKK----WCK 714
           LSV   F        + + A+++     GD LT++ AY  ++  K      +K    WC 
Sbjct: 525 LSVPQCFLRPKEAQQEADAAKQKFVHMDGDHLTLMQAYDAYMAYKVQCNGVEKAMSQWCW 584

Query: 715 RRGIEEQRFYEVTKLRSQFKQVLGDSGLIT 744
              I  +       +R+Q K++    GL T
Sbjct: 585 DNYINYRTMKSAENVRAQLKRLTDRVGLNT 614



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 74/114 (64%), Gaps = 4/114 (3%)

Query: 30  KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIAC 85
           +I E +  LP  + K + +  V K +V ++ G+TG GK+TQ+PQ+L++AG+    + IAC
Sbjct: 61  EILEKRQQLPCWREKVDFLKLVKKSQVTLLVGETGSGKTTQMPQFLLEAGYASDGKMIAC 120

Query: 86  TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           TQPRR+A +S+++RVA E        VG+ IRFE      T + ++T+G+LLR+
Sbjct: 121 TQPRRVAAMSVAQRVAQEMDVTLGEQVGFTIRFEDQTGPNTMLKYMTDGMLLRE 174



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 63/108 (58%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT PG C+RLY+E  Y  L   + PEI R ++ S++L+L  +G+ D+  F F++ P  E
Sbjct: 406 GRTRPGKCFRLYTENAYGDLQPSTFPEILRSNLSSVVLTLKKLGIDDLVHFDFMDPPAPE 465

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFH 915
            +  ++ +L   GA+D +  +T  GR ++D PV+  +  +L+    FH
Sbjct: 466 TMMRALETLVYLGALDEEGDLTEFGRTMADFPVEPQMAAVLLRSGRFH 513



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            DN LS Y+V++LDE HER L  D L G++K +L +  ++K+++MSAT+  E F  YF
Sbjct: 178  DNKLSRYNVIMLDEAHERTLATDVLFGLLKEILPNRPDLKVVVMSATLEAEAFGKYF 234


>gi|4826690|ref|NP_004932.1| ATP-dependent RNA helicase DHX8 [Homo sapiens]
 gi|114666955|ref|XP_001154202.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 5 [Pan
            troglodytes]
 gi|397468954|ref|XP_003806131.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 1 [Pan paniscus]
 gi|3023637|sp|Q14562.1|DHX8_HUMAN RecName: Full=ATP-dependent RNA helicase DHX8; AltName: Full=DEAH box
            protein 8; AltName: Full=RNA helicase HRH1
 gi|807817|dbj|BAA09078.1| RNA helicase [Homo sapiens]
 gi|119572062|gb|EAW51677.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8, isoform CRA_b [Homo
            sapiens]
 gi|168275648|dbj|BAG10544.1| ATP-dependent RNA helicase DHX8 [synthetic construct]
 gi|410215672|gb|JAA05055.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Pan troglodytes]
 gi|410264628|gb|JAA20280.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Pan troglodytes]
 gi|410308820|gb|JAA33010.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Pan troglodytes]
 gi|410337187|gb|JAA37540.1| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Pan troglodytes]
          Length = 1220

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 669  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 728

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 729  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 777

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 778  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 836

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 837  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 896

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 897  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 956

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 957  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1016

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1017 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1072

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1073 RRAQDIR---KQMLG 1084



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 530 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 587

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 588 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 647

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 648 FEDCTSPETVIKYMTDGMLLRE 669



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 893  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 952

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 953  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1008



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 673  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 729


>gi|391340772|ref|XP_003744710.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16-like [Metaseiulus occidentalis]
          Length = 1037

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 146/425 (34%), Positives = 243/425 (57%), Gaps = 19/425 (4%)

Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
           L +Y  +++DE HER L+ + L G+++ ++    ++K+I+ SAT++   F  +F   A +
Sbjct: 458 LDNYSAIIMDEAHERSLNTEVLFGLLRNVIADRHDLKLIVTSATMDASKFAEFFGN-APV 516

Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
             VPGR +P+ L +       +   E    G   + + I    + +   GD+LIFM G  
Sbjct: 517 FTVPGRTFPVDLFFA------KNMIEDYVDGAVKQAIQI----HLQPSSGDILIFMPGQE 566

Query: 437 EISSIVRAAQE---YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETS 493
           +I       QE     E S    +LP++S L  + Q ++F  AP+G+RKCIV+TNIAETS
Sbjct: 567 DIEVTCDLIQERLSQVENSPPLAILPIYSQLPSDLQAKIFQKAPDGIRKCIVATNIAETS 626

Query: 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553
           +T+DGI FVVDSG  K   Y+    M  LQ + +S+A+A QR GRAGRTGPGVC+RLY+ 
Sbjct: 627 LTVDGISFVVDSGYCKLKVYNPRIGMDALQIYPVSQANANQRSGRAGRTGPGVCFRLYTA 686

Query: 554 EQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHG 612
            QY + L   + PEI+R ++ +++L L  + + ++ +F F++ PP +NI +S+  L   G
Sbjct: 687 SQYENELLTTTVPEIQRTNLANVVLLLKSLRVENLLEFHFMDPPPQDNILNSMYQLWILG 746

Query: 613 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRD 672
           A+D+  ++T LGR + + P+D PL KM++        + +L++ ++LSV S F     R+
Sbjct: 747 ALDNIGQLTHLGRKMVEFPLDPPLSKMVIVSEEMGCSEEILTIVSMLSVPSIFYRPKGRE 806

Query: 673 PDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQ 732
            + ++ R++L+    D LT LN Y++W   +     S  WC    +  +   +V ++R Q
Sbjct: 807 EESDSVREKLQVPESDHLTFLNVYQKWKMTR----YSSSWCGEHFVHVKSMRKVREVREQ 862

Query: 733 FKQVL 737
            + + 
Sbjct: 863 LRDIF 867



 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 76/119 (63%), Gaps = 3/119 (2%)

Query: 24  KFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR- 82
           +F+    I + +  LPV   ++E++  +   +VVII G+TG GK+TQ+ QYL + G+ + 
Sbjct: 333 EFARKKTITQQRQYLPVFAAREELLKVIRDNQVVIIVGETGSGKTTQLTQYLHEDGYTKY 392

Query: 83  --IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
             I CTQPRR+A +S++KRV+ E   +    VGY IRFE     KT I ++T+G+LLR+
Sbjct: 393 GMIGCTQPRRVAAMSVAKRVSEEVGCKLGEEVGYAIRFEDCTSPKTVIKYMTDGILLRE 451



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 69/102 (67%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPGVC+RLY+  QY + L   + PEI+R ++ +++L L  + + ++ +F F++ PP +
Sbjct: 674 RTGPGVCFRLYTASQYENELLTTTVPEIQRTNLANVVLLLKSLRVENLLEFHFMDPPPQD 733

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
           NI +S+  L   GA+D+  ++T LGR + + P+D PL KM++
Sbjct: 734 NILNSMYQLWILGALDNIGQLTHLGRKMVEFPLDPPLSKMVI 775



 Score = 43.9 bits (102), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 38/66 (57%)

Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
            L +Y  +++DE HER L+ + L G+++ ++    ++K+I+ SAT++   F  +F      
Sbjct: 458  LDNYSAIIMDEAHERSLNTEVLFGLLRNVIADRHDLKLIVTSATMDASKFAEFFGNAPVF 517

Query: 1182 LLSGST 1187
             + G T
Sbjct: 518  TVPGRT 523


>gi|294867201|ref|XP_002765001.1| ATP-dependent RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239864881|gb|EEQ97718.1| ATP-dependent RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 735

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 156/450 (34%), Positives = 251/450 (55%), Gaps = 24/450 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   DN LS Y+V++LDE HER L  D L G++K +L +  ++K+++MSAT+  E F  Y
Sbjct: 174 EAQLDNKLSRYNVIMLDEAHERTLATDVLFGLLKEILPNRPDLKVVVMSATLEAEAFGKY 233

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A ++KVPGR YP+++ Y P  + D  +S        ++ +  I  + P    GD+L
Sbjct: 234 FYN-APLLKVPGRTYPVEIFYSPESQKDYFESA-------VQTVVYIHTEEP-AGSGDIL 284

Query: 430 IFMSGISEISSI---VRAAQEYNEKSQG-WIVLPLHSTLSLEEQDRVFHYAP----EGL- 480
           +F++G  EI +    +R A     +  G  +V+PL+S+L   +Q ++F  AP    EG  
Sbjct: 285 LFLTGEEEIENACKQLRTASMRTMREHGELLVVPLYSSLPPRQQQKIFEEAPPPRYEGGP 344

Query: 481 --RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
             RK +V+TN+AETSITIDGI +VVD G  K+  ++   +M +L    IS+ASA+QR GR
Sbjct: 345 PGRKVVVATNVAETSITIDGIVYVVDPGFSKQKVFNPRTRMESLLVSPISQASAQQRAGR 404

Query: 539 AGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
           AGRT PG C+RLY+E  Y  L   + PEI R ++ S++L+L  +G+ D+  F F++ P  
Sbjct: 405 AGRTRPGKCFRLYTENAYGDLQPSTFPEILRSNLSSVVLTLKKLGIDDLVHFDFMDPPAP 464

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
           E +  ++ +L   GA+D +  +T  GR ++D PV+  +  +L+    FH  +  +++ A+
Sbjct: 465 ETMMRALETLVYLGALDEEGDLTEFGRTMADFPVEPQMAAVLLRSGRFHCTEEAITIIAM 524

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKK----WCK 714
           LSV   F        + + A+++     GD LT++ AY  ++  K      +K    WC 
Sbjct: 525 LSVPQCFLRPKEAQQEADAAKQKFVHMDGDHLTLMQAYDAYMAYKVQCNGVEKAMSQWCW 584

Query: 715 RRGIEEQRFYEVTKLRSQFKQVLGDSGLIT 744
              I  +       +R+Q K++    GL T
Sbjct: 585 DNYINYRTMKSAENVRAQLKRLTDRVGLNT 614



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 74/114 (64%), Gaps = 4/114 (3%)

Query: 30  KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIAC 85
           +I E +  LP  + K + +  V K +V ++ G+TG GK+TQ+PQ+L++AG+    + IAC
Sbjct: 61  EILEKRQQLPCWREKVDFLKLVKKSQVTLLVGETGSGKTTQMPQFLLEAGYASDGKMIAC 120

Query: 86  TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           TQPRR+A +S+++RVA E        VG+ IRFE      T + ++T+G+LLR+
Sbjct: 121 TQPRRVAAMSVAQRVAQEMDVTLGEQVGFTIRFEDQTGPNTMLKYMTDGMLLRE 174



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 63/108 (58%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT PG C+RLY+E  Y  L   + PEI R ++ S++L+L  +G+ D+  F F++ P  E
Sbjct: 406 GRTRPGKCFRLYTENAYGDLQPSTFPEILRSNLSSVVLTLKKLGIDDLVHFDFMDPPAPE 465

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFH 915
            +  ++ +L   GA+D +  +T  GR ++D PV+  +  +L+    FH
Sbjct: 466 TMMRALETLVYLGALDEEGDLTEFGRTMADFPVEPQMAAVLLRSGRFH 513



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            DN LS Y+V++LDE HER L  D L G++K +L +  ++K+++MSAT+  E F  YF
Sbjct: 178  DNKLSRYNVIMLDEAHERTLATDVLFGLLKEILPNRPDLKVVVMSATLEAEAFGKYF 234


>gi|60360134|dbj|BAD90286.1| mKIAA4096 protein [Mus musculus]
          Length = 1264

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 713  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 772

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 773  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 821

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 822  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 880

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 881  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 940

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 941  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 1000

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 1001 AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1060

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1061 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1116

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1117 RRAQDIR---KQMLG 1128



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 574 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 631

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 632 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 691

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 692 FEDCTSPETVIKYMTDGMLLRE 713



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 937  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 996

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 997  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1052



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 717  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 773


>gi|410981303|ref|XP_003997010.1| PREDICTED: ATP-dependent RNA helicase DHX8 [Felis catus]
          Length = 1222

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 671  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 730

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 731  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 779

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 780  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 838

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 839  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 898

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 899  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 958

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 959  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1018

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1019 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1074

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1075 RRAQDIR---KQMLG 1086



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 532 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 589

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 590 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 649

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 650 FEDCTSPETVIKYMTDGMLLRE 671



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 895  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 954

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 955  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1010



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 675  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 731


>gi|284007930|emb|CBA73888.1| ATP-dependent helicase [Arsenophonus nasoniae]
          Length = 1250

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 155/444 (34%), Positives = 249/444 (56%), Gaps = 25/444 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E+  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  +
Sbjct: 128 ELHNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSQH 187

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIV-ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           F R A I++V GR YP+++ Y PI+ E + +  +++D      I+  +D+   +   GD+
Sbjct: 188 FAR-APIVEVSGRTYPVEVRYRPIIGESNDSSRDQIDG-----IIDAVDE-LSQQAIGDI 240

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFMSG  EI     A  + N K     +LPL + LS  EQ+R+F       R+ +++TN
Sbjct: 241 LIFMSGEREIRDTAEALNKLNLKHTE--ILPLFARLSNNEQNRIFQ--SHSGRRIVLATN 296

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D+G V+   Y    K+  L    IS+ASAEQRKGR GR   G+C 
Sbjct: 297 VAETSLTVPGIKYVIDTGYVRISRYSYRTKVQRLPIEPISQASAEQRKGRCGRVSAGICI 356

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +     Y+ PEI R ++ S++L ++ +GLGD+ +FPF+E P   NI+  +R L
Sbjct: 357 RLYSEEDFLARPMYTDPEILRTNLASVILQMMAVGLGDINQFPFIEMPDKRNIQDGIRLL 416

Query: 609 TQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            +  AI +K      ++T +GR L+ LP+D  LG+M++       +  ++ +++ LS+Q 
Sbjct: 417 EELNAIANKSVNGDYQLTQIGRQLAQLPLDPRLGRMILEARKHGCVREIMVISSALSIQD 476

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRV-----RSKKWCKRRGI 718
           P      +    +           D L  LN    W  VK+ +      + +K CK+  +
Sbjct: 477 PRERPLDKQQIADEKHHRFIDKGSDFLAYLNL---WDFVKQQQTILSNAQFRKQCKQELL 533

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL 742
              R  E   + SQ +QV+ + G+
Sbjct: 534 NFMRLREWQDIYSQLRQVVKELGI 557



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE +     Y+ PEI R ++ S++L ++ +GLGD+ +FPF+E P   
Sbjct: 348 GRVSAGICIRLYSEEDFLARPMYTDPEILRTNLASVILQMMAVGLGDINQFPFIEMPDKR 407

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  +R L +  AI +K      ++T +GR L+ LP+D  LG+M++       +  +++
Sbjct: 408 NIQDGIRLLEELNAIANKSVNGDYQLTQIGRQLAQLPLDPRLGRMILEARKHGCVREIMV 467

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 468 ISSALSIQ--DPRER 480



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 6/122 (4%)

Query: 22  KEKFSTLMKIRET---QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA 78
           K+K +   + R T    ++LPV + KQ I   +   +VVIIAG+TG GK+TQ+P+  ++ 
Sbjct: 5   KKKIANRQRARPTIIYPDNLPVIEKKQAIYQAIRDHQVVIIAGETGSGKTTQLPKICLEL 64

Query: 79  GF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
           G      I  TQPRR+A  S++ R+A E      + VGY++RF     + T I  +T+G+
Sbjct: 65  GRGVKGLIGHTQPRRLAARSVANRIAEELNVPLGSAVGYKVRFNDQIGDNTFIKLMTDGI 124

Query: 136 LL 137
           LL
Sbjct: 125 LL 126



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  +F R 
Sbjct: 132  DKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSQHFARA 191

Query: 1179 AKDLLSGST 1187
                +SG T
Sbjct: 192  PIVEVSGRT 200


>gi|114145427|ref|NP_001041309.1| ATP-dependent RNA helicase DHX8 [Rattus norvegicus]
 gi|37654286|gb|AAQ96248.1| LRRGT00035 [Rattus norvegicus]
          Length = 1210

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 638  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 697

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 698  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 746

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 747  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 805

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 806  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 865

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 866  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 925

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 926  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 985

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 986  VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1041

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1042 RRAQDIR---KQMLG 1053



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 499 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 556

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 557 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 616

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 617 FEDCTSPETVIKYMTDGMLLRE 638



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 1/117 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP 
Sbjct: 861 GRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPM 920

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           E + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 921 ETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 977



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 642  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 698


>gi|453081386|gb|EMF09435.1| P-loop containing nucleoside triphosphate hydrolase protein
            [Mycosphaerella populorum SO2202]
          Length = 1429

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 151/434 (34%), Positives = 235/434 (54%), Gaps = 21/434 (4%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E+  D  LS Y V++LDE HER +  D L G++K  L    ++K+I+ SAT++ E F TY
Sbjct: 621  EILLDPELSKYSVIMLDEAHERTIATDVLFGLLKKTLKKRPDMKLIVTSATLDAEKFSTY 680

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            FN    I+ +PGR +P+++ Y    E D   S           L+ + + +   + GD+L
Sbjct: 681  FNECP-ILTIPGRTFPVEIMYSREPESDYLDS----------ALTTVMQIHLTEKPGDIL 729

Query: 430  IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
            +F++G  EI +    +    +         ++LP++  L  E   ++F   P G RK ++
Sbjct: 730  LFLTGKEEIDTSCEILFERMKALGPSVPELLILPIYGALPTEIASKIFEPPPPGGRKVVI 789

Query: 486  STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
            +TNIAETSITIDGI FV+D G VK+ +YD    M  LQ   IS+A A+QR GRAGRTGPG
Sbjct: 790  ATNIAETSITIDGIYFVIDPGFVKQTAYDAKLGMDRLQVTPISQAQAKQRAGRAGRTGPG 849

Query: 546  VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
             C+RLY+E  + S +   + PEI+R ++ + +L L  MG+ D+  F F++ PP   + ++
Sbjct: 850  KCFRLYTESAFQSEMLPTTIPEIQRQNLSNTILMLKAMGINDLLGFDFMDPPPTNTMLTA 909

Query: 605  VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS-VQS 663
            +  L   GA+D +  +T LGR ++D P+D  LGK L+        + +LS+ A++S VQ+
Sbjct: 910  LEELYALGALDDEGLLTRLGRRMADFPMDPALGKALITSVDLGCSEEMLSIVALISAVQT 969

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  +       GD LT+LN Y  W    K   +S  WC    I+ +  
Sbjct: 970  VFHRPKEKQQQADAKKARFHDPAGDHLTLLNVYNGW----KASGKSDPWCFENFIQPRNI 1025

Query: 724  YEVTKLRSQFKQVL 737
                 +R Q  Q+L
Sbjct: 1026 KRAEDVRKQLIQIL 1039



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 76/116 (65%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---I 83
           T M I++ + SLP  + +++ ++ V + +++I+ GDTG GK+TQ+ QYL + G      I
Sbjct: 506 TNMSIKDQRESLPAYKMRKQFLEAVRQYQLMIVVGDTGSGKTTQLTQYLAEDGLANHGMI 565

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A +S++ RVA E   +    VGY IRFE    EKTKI ++T+G++ R+
Sbjct: 566 GCTQPRRVAAMSVAARVADEVGCRLGEEVGYTIRFEDKTNEKTKIKYMTDGIMQRE 621



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG C+RLY+E  + S +   + PEI+R ++ + +L L  MG+ D+  F F++ PP 
Sbjct: 844 GRTGPGKCFRLYTESAFQSEMLPTTIPEIQRQNLSNTILMLKAMGINDLLGFDFMDPPPT 903

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
             + +++  L   GA+D +  +T LGR ++D P+D  LGK L+
Sbjct: 904 NTMLTALEELYALGALDDEGLLTRLGRRMADFPMDPALGKALI 946



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q ++  D  LS Y V++LDE HER +  D L G++K  L    ++K+I+ SAT++ E F 
Sbjct: 619  QREILLDPELSKYSVIMLDEAHERTIATDVLFGLLKKTLKKRPDMKLIVTSATLDAEKFS 678

Query: 1173 TYFN 1176
            TYFN
Sbjct: 679  TYFN 682


>gi|239606255|gb|EEQ83242.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis ER-3]
 gi|327355965|gb|EGE84822.1| ATP-dependent RNA helicase DHX8 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1225

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 156/434 (35%), Positives = 238/434 (54%), Gaps = 22/434 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E+  D  L  Y V++LDE HER +  D L G++K  +    ++KII+ SAT++ + F  Y
Sbjct: 665  EILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTIIRRPDLKIIVTSATLDADKFSEY 724

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            FN +  I  +PGR YP+++ Y    E     S+ LD    + ++ I    +     GD+L
Sbjct: 725  FN-MCPIFSIPGRTYPVEIMYSREPE-----SDYLDAA-LVTVMQI----HLTEPAGDIL 773

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   K+ G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 774  LFLTGQEEIDTACEILYE-RMKALGPSVPELIILPVYSALPSEMQSRIFEPAPPGSRKVV 832

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETSITID I +VVD G VK+ +YD    M +L    IS+A A+QR GRAGRTGP
Sbjct: 833  IATNIAETSITIDQIYYVVDPGFVKQNAYDPKLGMDSLVVTPISQAQAKQRSGRAGRTGP 892

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP   + +
Sbjct: 893  GKCFRLYTEAAYQSEMLPTTVPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLT 952

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L    A+D +  +T LGR ++D P++  L K+L+        D +LS+ A+LSV S
Sbjct: 953  ALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVEMGCSDEMLSIVAMLSVHS 1012

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +    HGD LT+LN Y  W    K+   S  WC    I+ ++ 
Sbjct: 1013 IFYRPKEKQQQADQKKAKFHDPHGDHLTLLNVYNGW----KNSRFSSPWCFENFIQARQM 1068

Query: 724  YEVTKLRSQFKQVL 737
              V  +R Q   ++
Sbjct: 1069 RRVQDVREQLVTIM 1082



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 87/135 (64%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EWK + ++     Q     T M +++ + SLPV ++++++++ V + +++I+ GDTG GK
Sbjct: 534 EWKRVTQSK---DQSFGRRTNMTMKQQRESLPVFKFRKQLLEAVKENQLLIVVGDTGSGK 590

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQ+ QYL + GF     I CTQPRR+A +S++KRV+ E   +    VGY IRFE     
Sbjct: 591 TTQLTQYLAEGGFANNGIIGCTQPRRVAAVSVAKRVSEEVGCRLGAEVGYTIRFEDCTSP 650

Query: 125 KTKIVFITEGLLLRQ 139
           +TKI ++T+G+L R+
Sbjct: 651 ETKIKYMTDGILQRE 665



 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 1/126 (0%)

Query: 808  SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
             RTGPG C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP 
Sbjct: 888  GRTGPGKCFRLYTEAAYQSEMLPTTVPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPT 947

Query: 867  ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
              + +++  L    A+D +  +T LGR ++D P++  L K+L+        D ML +   
Sbjct: 948  NTMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVEMGCSDEMLSIVAM 1007

Query: 927  LNFGAI 932
            L+  +I
Sbjct: 1008 LSVHSI 1013



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q ++  D  L  Y V++LDE HER +  D L G++K  +    ++KII+ SAT++ + F 
Sbjct: 663  QREILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTIIRRPDLKIIVTSATLDADKFS 722

Query: 1173 TYFN 1176
             YFN
Sbjct: 723  EYFN 726


>gi|320353713|ref|YP_004195052.1| ATP-dependent helicase HrpA [Desulfobulbus propionicus DSM 2032]
 gi|320122215|gb|ADW17761.1| ATP-dependent helicase HrpA [Desulfobulbus propionicus DSM 2032]
          Length = 1262

 Score =  253 bits (646), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 145/432 (33%), Positives = 238/432 (55%), Gaps = 14/432 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D  L+ YD L++DE HER L+ DFLLG +K LL S  ++K+I+ SATI+ E F T
Sbjct: 127 AETRQDPQLAQYDTLIVDEAHERSLNIDFLLGYLKNLLPSRPDLKLIISSATIDAEKFST 186

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A ++ V GR YPI   Y   ++ D  +   +D     + ++ +++     + GD+
Sbjct: 187 HFGG-APVMTVSGRTYPITTLYRETIDEDEAELSYVD-----QAIAAVEELATLPQGGDI 240

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+FM    +I+  +   Q   +     ++LPL   L   +Q ++F  +P   RK IV+TN
Sbjct: 241 LVFMPTERDINDTLDGLQHLGDSH---LLLPLFGRLPAADQRKIFRPSPH--RKIIVATN 295

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GIRFVVD+G  +   Y+     ++L+   IS+AS EQR+GR GRTGPG C 
Sbjct: 296 VAETSVTVPGIRFVVDTGLARIARYNPRTGTTSLKVSRISRASCEQRRGRCGRTGPGTCI 355

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE +     ++ PEI+R ++  ++L ++ + LGD  +FPF++APP+  I    R L
Sbjct: 356 RLYSEEDFLAREPFTLPEIQRANLAEVILQMISLKLGDPARFPFVDAPPSTAIREGYRLL 415

Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
            + GA   + R+T+ GR ++ LP+D  + ++++       +  +  LAA LS+Q P    
Sbjct: 416 KELGATVGEHRLTANGRLMARLPLDPRISRIIIESMALGSVREITILAAALSIQDPRVRP 475

Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWL---GVKKDRVRSKKWCKRRGIEEQRFYE 725
             ++   +   ++      D LT+LN +  +    G    + R  ++CK   +  QR  E
Sbjct: 476 PDKEHKADEVHRQFVDKKSDFLTLLNIWNSFFVPGGEAPSKSRLSRFCKAHFLSWQRMRE 535

Query: 726 VTKLRSQFKQVL 737
              +  Q  ++L
Sbjct: 536 WMDVHEQISRLL 547



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 85/139 (61%), Gaps = 11/139 (7%)

Query: 11  LLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQ 70
           ++LRT  D   +E F   M++      LPV++ ++ I+  + + +V+II GDTG GK+TQ
Sbjct: 2   IVLRT--DRHPQEYFHNFMQL-SYPPELPVSEQRESIVAAIREHQVLIIIGDTGSGKTTQ 58

Query: 71  IPQYLVQA---GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
           +P+  ++A       I CTQPRRIA +S++ RVA E   +  + VGY+IRF     ++T 
Sbjct: 59  LPKMCIEADRGATGMIGCTQPRRIAALSVADRVAEEL--RAPDRVGYKIRFHDQTSKETL 116

Query: 128 IVFITEGLLL---RQDSGL 143
           I F+T+G+LL   RQD  L
Sbjct: 117 IKFMTDGVLLAETRQDPQL 135



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 71/121 (58%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG C RLYSEE +     ++ PEI+R ++  ++L ++ + LGD  +FPF++APP+ 
Sbjct: 347 GRTGPGTCIRLYSEEDFLAREPFTLPEIQRANLAEVILQMISLKLGDPARFPFVDAPPST 406

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I    R L + GA   + R+T  GR ++ LP+D  + ++++       +  + +L  AL
Sbjct: 407 AIREGYRLLKELGATVGEHRLTANGRLMARLPLDPRISRIIIESMALGSVREITILAAAL 466

Query: 928 N 928
           +
Sbjct: 467 S 467



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 45/69 (65%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  L+ YD L++DE HER L+ DFLLG +K LL S  ++K+I+ SATI+ E F T+F   
Sbjct: 132  DPQLAQYDTLIVDEAHERSLNIDFLLGYLKNLLPSRPDLKLIISSATIDAEKFSTHFGGA 191

Query: 1179 AKDLLSGST 1187
                +SG T
Sbjct: 192  PVMTVSGRT 200


>gi|431912001|gb|ELK14142.1| ATP-dependent RNA helicase DHX8 [Pteropus alecto]
          Length = 1216

 Score =  253 bits (646), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 665  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 724

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 725  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 773

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 774  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 832

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 833  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 892

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 893  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 952

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 953  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1012

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1013 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1068

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1069 RRAQDIR---KQMLG 1080



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 526 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 583

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 584 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 643

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 644 FEDCTSPETVIKYMTDGMLLRE 665



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 889  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 948

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 949  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1004



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 669  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 725


>gi|405965013|gb|EKC30444.1| Putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5
            [Crassostrea gigas]
          Length = 2086

 Score =  253 bits (646), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 150/415 (36%), Positives = 239/415 (57%), Gaps = 16/415 (3%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L +Y  +V+DE HER ++ D LLG+IK  L    E+++++ SATI+ E+F  Y
Sbjct: 739  ECLKDPLLMNYSCVVIDEAHERSVYTDLLLGMIKKCLPQRPELRVVVTSATIDPEVFVRY 798

Query: 370  FN--RIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
            F    I  ++KV GR++P+++E+     L  +   ++     I+ +    + +     GD
Sbjct: 799  FGGPDICPVLKVSGRMFPVEIEW-----LKNSCGPEVADEYEIKAIEKAAEIHKSEPSGD 853

Query: 428  VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
            +L+F++   EI       +      +   +LPLH  L  +EQ+ VF  AP G RK +++T
Sbjct: 854  ILVFLTSQVEIEQCAEKLEALLRGKRDHWILPLHGKLQTDEQNLVFKCAPNGRRKIVLAT 913

Query: 488  NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
            N+AETS+TI GI++VVD+G VKE+SYD   K+STL+   ++K+SA+QRKGRAGRTGPG C
Sbjct: 914  NVAETSVTIPGIKYVVDTGAVKELSYDPRKKVSTLRIVKVTKSSADQRKGRAGRTGPGKC 973

Query: 548  YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            YR+YS E Y  +   S PEI+++ +   +L L+ + + D  +F F++AP   ++E++ + 
Sbjct: 974  YRIYSNEDYEAMFPTSIPEIQKIHLGHAILKLLQLDV-DPLEFDFVQAPEKISMENAFQH 1032

Query: 608  LTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQID-TVLSLAAVLSVQSPFT 666
            LT+ GAI+   ++  LGR+++ LP +  LG +LV  S+ H +    + +AA  +V     
Sbjct: 1033 LTKLGAIEGG-KIAPLGRWIAKLPFEPNLG-VLVHDSIDHNVGLEGIIIAASCTVSGSLF 1090

Query: 667  NRAFRDPDCETARK---ELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGI 718
             R       ET+ K        HGD  T LN +KEW  V +   +  KWC+   I
Sbjct: 1091 YRGGTTIQKETSDKLKVPFCHKHGDHFTNLNVFKEWNAVHEK--QKGKWCRDNSI 1143



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 83/130 (63%), Gaps = 9/130 (6%)

Query: 18  DFKQKEKFSTLMKIRETQNS-----LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72
           + KQ E F ++M   E + S     LP+   + EIIDT+L+ +V II G+TG GKSTQI 
Sbjct: 611 NIKQNE-FDSVMNKFEVECSRLEQALPIYAKRTEIIDTILQNQVSIILGETGSGKSTQIT 669

Query: 73  QYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIV 129
           QY++++      +I CTQPR++A +SL++RV+ E  S   +LVGYQ+  +      TK++
Sbjct: 670 QYILESAISSSGKIICTQPRKVAAMSLAQRVSSELKSNVGDLVGYQVGMKSKLSHHTKVL 729

Query: 130 FITEGLLLRQ 139
           ++T+ +LL +
Sbjct: 730 YMTDHMLLNE 739



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 69/109 (63%), Gaps = 3/109 (2%)

Query: 809  RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
            RTGPG CYR+YS E Y  +   S PEI+++ +   +L L+ + + D  +F F++AP   +
Sbjct: 967  RTGPGKCYRIYSNEDYEAMFPTSIPEIQKIHLGHAILKLLQLDV-DPLEFDFVQAPEKIS 1025

Query: 869  IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQI 917
            +E++ + LT+ GAI+   ++  LGR+++ LP +  LG +LV  S+ H +
Sbjct: 1026 MENAFQHLTKLGAIEGG-KIAPLGRWIAKLPFEPNLG-VLVHDSIDHNV 1072



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 38/57 (66%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L +Y  +V+DE HER ++ D LLG+IK  L    E+++++ SATI+ E+F  YF
Sbjct: 743  DPLLMNYSCVVIDEAHERSVYTDLLLGMIKKCLPQRPELRVVVTSATIDPEVFVRYF 799


>gi|395826285|ref|XP_003786349.1| PREDICTED: ATP-dependent RNA helicase DHX8 [Otolemur garnettii]
          Length = 1222

 Score =  253 bits (646), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 671  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 730

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 731  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 779

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 780  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 838

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 839  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 898

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 899  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 958

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 959  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1018

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1019 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1074

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1075 RRAQDIR---KQMLG 1086



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 532 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 589

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 590 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 649

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 650 FEDCTSPETVIKYMTDGMLLRE 671



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 895  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 954

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 955  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1010



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 675  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 731


>gi|158256760|dbj|BAF84353.1| unnamed protein product [Homo sapiens]
          Length = 1220

 Score =  253 bits (646), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 669  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 728

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 729  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 777

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 778  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 836

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 837  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 896

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 897  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 956

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 957  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1016

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1017 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1072

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1073 RRAQDIR---KQMLG 1084



 Score = 97.1 bits (240), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K+ ++  V   +++I+ 
Sbjct: 530 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKERLVQAVHDNQILIVI 587

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG  K+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 588 GETGSVKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 647

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 648 FEDCTSPETVIKYMTDGMLLRE 669



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 893  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 952

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 953  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1008



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 673  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 729


>gi|66803084|ref|XP_635385.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
 gi|74996562|sp|Q54F05.1|DHX8_DICDI RecName: Full=ATP-dependent RNA helicase dhx8; AltName: Full=DEAH box
            protein 8
 gi|60463693|gb|EAL61875.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
          Length = 1160

 Score =  253 bits (646), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 154/435 (35%), Positives = 241/435 (55%), Gaps = 24/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  LS+Y V++LDE HER +  D L G++K  L    E+K+++ SAT+  E F  Y
Sbjct: 612  ECLLDPNLSAYSVIILDEAHERTISTDVLFGLLKQALQRRPELKVLITSATLEAEKFSKY 671

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A++  +PGR +P+ + Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 672  FMN-AQLFIIPGRTFPVDIRYTKDPEADY-----LD-ASLITVMQIHLSEPP----GDIL 720

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +  +   E   KS G      I+LP++S L  E Q ++F  AP G RK +
Sbjct: 721  LFLTGQEEIDAACQILYE-RMKSLGSNVPDLIILPVYSALPSEMQTKIFEPAPPGSRKVV 779

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +V+D G  K+  ++    M +L    IS+A+A QR GRAGRTGP
Sbjct: 780  IATNIAETSLTIDGIYYVIDPGFSKQKCFNPKNGMDSLVVAPISQAAARQRSGRAGRTGP 839

Query: 545  GVCYRLYSEEQYS--LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
            G CYRLY+E  +   +LA  S PEI+R ++ + +L++  MG+ D+  F F++ PP + + 
Sbjct: 840  GKCYRLYTESAFKNEMLAS-SIPEIQRTNLGNTVLTMKAMGINDLLNFDFMDPPPVQTLV 898

Query: 603  SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
            S++  L   GA+D +  +T LGR +++ P+D  L KML+        D +L++ A+LSVQ
Sbjct: 899  SAMEQLYSLGALDEEGLLTRLGRKMAEFPLDPQLSKMLIASVDLGCSDEILTVVAMLSVQ 958

Query: 663  SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
            + F     +    +  + +     GD LT+LN Y+ W    K+   S  WC    ++ + 
Sbjct: 959  NVFYRPKEKQALADQKKAKFFQPEGDHLTLLNVYESW----KNSKFSNPWCFENFVQARS 1014

Query: 723  FYEVTKLRSQFKQVL 737
                  +R Q   ++
Sbjct: 1015 LRRAQDVRKQLITIM 1029



 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 87/136 (63%), Gaps = 8/136 (5%)

Query: 8   EWKLLLR-TYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCG 66
           EWK + + +++ + +    +T   I+E + SLP+   ++  +  V + +++++ G+TG G
Sbjct: 481 EWKKVTQGSHIQYGK----ATSRSIKEQRESLPIFPLREAFLQAVSEHQLLVVIGETGSG 536

Query: 67  KSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRR 123
           K+TQ+ QYL +AG+    +I CTQPRR+A +S+SKRVA E   Q    VGY IRFE    
Sbjct: 537 KTTQMAQYLAEAGYGTRGKIGCTQPRRVAAMSVSKRVAEEFGCQLGQEVGYAIRFEDCTS 596

Query: 124 EKTKIVFITEGLLLRQ 139
            +T I F+T+G+LLR+
Sbjct: 597 PETIIKFMTDGILLRE 612



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 809 RTGPGVCYRLYSEEQYS--LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
           RTGPG CYRLY+E  +   +LA  S PEI+R ++ + +L++  MG+ D+  F F++ PP 
Sbjct: 836 RTGPGKCYRLYTESAFKNEMLAS-SIPEIQRTNLGNTVLTMKAMGINDLLNFDFMDPPPV 894

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
           + + S++  L   GA+D +  +T LGR +++ P+D  L KML+
Sbjct: 895 QTLVSAMEQLYSLGALDEEGLLTRLGRKMAEFPLDPQLSKMLI 937



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  LS+Y V++LDE HER +  D L G++K  L    E+K+++ SAT+  E F  YF   
Sbjct: 616  DPNLSAYSVIILDEAHERTISTDVLFGLLKQALQRRPELKVLITSATLEAEKFSKYFMNA 675

Query: 1179 AKDLLSGST 1187
               ++ G T
Sbjct: 676  QLFIIPGRT 684


>gi|268589684|ref|ZP_06123905.1| ATP-dependent helicase HrpA [Providencia rettgeri DSM 1131]
 gi|291314995|gb|EFE55448.1| ATP-dependent helicase HrpA [Providencia rettgeri DSM 1131]
          Length = 1299

 Score =  253 bits (646), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 162/494 (32%), Positives = 265/494 (53%), Gaps = 33/494 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176 AELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSK 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRTERG 426
           +F+  A I++V GR YP+++ Y PI+  D+  S++       +I  IID   +      G
Sbjct: 236 HFSH-APIVEVSGRTYPVEVRYRPIMG-DQNDSDR------DQIDGIIDAVNELSVEGNG 287

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+LIFMSG  EI     A  + + +     +LPL + LS  EQ+R+FH  P G R+ I++
Sbjct: 288 DILIFMSGEREIRDTADALSKLSLRHTE--ILPLFARLSNSEQNRIFH--PHGGRRIILA 343

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D+G  +   Y    K+  L    IS+ASA QRKGR GR   G+
Sbjct: 344 TNVAETSLTVPGIKYVIDTGYARISRYSYRTKVQRLPVEAISQASANQRKGRCGRVSDGI 403

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V+
Sbjct: 404 CIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTSIGLGDISAFPFVEAPDKRNIQDGVK 463

Query: 607 SLTQHGAIDSKE------RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
            L + GAI S +      ++T  GR L+ LPVD  L +M++       +   + + + LS
Sbjct: 464 LLEELGAIKSHKQADKGYQLTDTGRQLAQLPVDPRLARMVIEARKHGAVRETMVIVSALS 523

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  LN + ++L  ++ ++ +   +K C++  
Sbjct: 524 IQDPRERPLDKQQASDEKHRRFHDKQSDFLAFLNLW-DYLKEQQTQLSNAQFRKMCRQDF 582

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   L +Q +QV+ + G          +++S E   R   + LL  +     +
Sbjct: 583 LNYLRIREWQDLYTQLRQVVKEQGF---------AINSAEADFRSIHVSLLAGLLSHIGQ 633

Query: 778 EAPKRRKMLKADNA 791
           +   + +   A NA
Sbjct: 634 KDADKHEFTGARNA 647



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 8/135 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 398 RVSDGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTSIGLGDISAFPFVEAPDKRN 457

Query: 869 IESSVRSLTQHGAIDSKE------RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           I+  V+ L + GAI S +      ++T  GR L+ LPVD  L +M++       +   ++
Sbjct: 458 IQDGVKLLEELGAIKSHKQADKGYQLTDTGRQLAQLPVDPRLARMVIEARKHGAVRETMV 517

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 518 IVSALSIQ--DPRER 530



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIA 92
           ++LPV+Q K  I+D + K +VVIIAG+TG GK+TQIP+  ++ G      I  TQPRR+A
Sbjct: 71  DNLPVSQKKDVILDAIKKHQVVIIAGETGSGKTTQIPKICLELGRGVLGFIGHTQPRRLA 130

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             S++ R+A E   +    VGY++RF     E T++  +T+G+LL
Sbjct: 131 ARSVASRLAQELECELGTNVGYKVRFSDQVSETTQVKLMTDGILL 175



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176  AELQNDKLLLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSK 235

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 236  HFSHAPIVEVSGRT 249


>gi|126307880|ref|XP_001363005.1| PREDICTED: ATP-dependent RNA helicase DHX8 [Monodelphis domestica]
          Length = 1196

 Score =  253 bits (646), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 645  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 704

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 705  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 753

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 754  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 812

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 813  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 872

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 873  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 932

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 933  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 992

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 993  VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1048

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1049 RRAQDIR---KQMLG 1060



 Score =  100 bits (248), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T + I E + SLP+ + K++++  V   +++I+ 
Sbjct: 506 MMPNDIPEWKK--HAFGGNKASYGKKTQLSIIEQRESLPIFKLKEQLVQAVHDNQILIVI 563

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 564 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 623

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 624 FEDCTSPETVIKYMTDGMLLRE 645



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 869 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 928

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 929 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 984



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 649  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 705


>gi|344285570|ref|XP_003414534.1| PREDICTED: ATP-dependent RNA helicase DHX8 [Loxodonta africana]
          Length = 1210

 Score =  253 bits (646), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 659  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 718

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 719  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 767

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 768  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 826

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 827  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 886

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 887  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 946

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 947  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1006

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1007 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1062

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1063 RRAQDIR---KQMLG 1074



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 520 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 577

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 578 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 637

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 638 FEDCTSPETVIKYMTDGMLLRE 659



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 883 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 942

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 943 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 998



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 663  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 719


>gi|398871600|ref|ZP_10626913.1| ATP-dependent helicase HrpA [Pseudomonas sp. GM74]
 gi|398205853|gb|EJM92631.1| ATP-dependent helicase HrpA [Pseudomonas sp. GM74]
          Length = 1303

 Score =  253 bits (646), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 155/450 (34%), Positives = 247/450 (54%), Gaps = 28/450 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D +L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI++E F  
Sbjct: 175 AETQNDRYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSK 234

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYI--RILSIIDK--KYPRTE 424
           +F+  A I++V GR YP+   Y P+      +  +++    +   IL+ +D+   Y R+E
Sbjct: 235 HFDD-APIVEVSGRTYPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSE 293

Query: 425 R---GDVLIFMSGISEI---SSIVRAAQ-EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAP 477
           R   GDVL+F+ G  EI   + ++R AQ ++ E      +LPL++ LS  EQ R+F   P
Sbjct: 294 RRSPGDVLVFLPGEREIRDAADMLRKAQLKHTE------ILPLYARLSPAEQQRIFQSHP 347

Query: 478 EGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKG 537
              R+ +++TN+AETS+T+ GIR+V+DSG  +   Y   AK+  L    +S+ASA QRKG
Sbjct: 348 G--RRVVLATNVAETSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKG 405

Query: 538 RAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 597
           R GR  PG+C RLYSEE +    E++ PEI R ++ +++L ++ + LG+V  FPF+E P 
Sbjct: 406 RCGRVEPGICVRLYSEEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEVTAFPFIEPPD 465

Query: 598 AENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAA 657
            + I      L +  A+D   ++T LGR L+ LPVD  +G+ML+  +    +  VL +A+
Sbjct: 466 GKAISDGYNLLQELSAVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVAS 525

Query: 658 VLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-----SKKW 712
            +S+Q P      R    + A  + +    D   ++N    W G ++ R        + W
Sbjct: 526 AMSIQDPRERPPERQQAADQAHGQWKDADSDFAGLVNL---WRGFEEQRQALTASPLRNW 582

Query: 713 CKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
           C++  +   R  E      Q   +  D  L
Sbjct: 583 CRKNFLNYLRLREWRDSHRQLSLICRDMQL 612



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R  PG+C RLYSEE +    E++ PEI R ++ +++L ++ + LG+V  FPF+E P  +
Sbjct: 408 GRVEPGICVRLYSEEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEVTAFPFIEPPDGK 467

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I      L +  A+D   ++T LGR L+ LPVD  +G+ML+  +    +  +L++  A+
Sbjct: 468 AISDGYNLLQELSAVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAM 527

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 528 SIQ--DPRER 535



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIA 92
           +SLP+A  + EI   + K +V+IIAG+TG GK+TQ+P+  ++ G  +   I  TQPRRIA
Sbjct: 70  DSLPIAAKRDEIKKALEKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLIGHTQPRRIA 129

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             S++ RVA E  +    LVGYQ+RFE      T I  +T+G+LL
Sbjct: 130 ARSVASRVAEELCTPLGALVGYQVRFEDQSDSSTLIKLMTDGILL 174



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D +L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI++E F  +F+  
Sbjct: 180  DRYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDA 239

Query: 1179 AKDLLSGST 1187
                +SG T
Sbjct: 240  PIVEVSGRT 248


>gi|313212412|emb|CBY36394.1| unnamed protein product [Oikopleura dioica]
          Length = 1041

 Score =  253 bits (646), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 146/409 (35%), Positives = 229/409 (55%), Gaps = 20/409 (4%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  LS Y V++LDE HER +H D + G++K ++     +K+I+ SAT++   F +Y
Sbjct: 633  ECLVDTDLSRYSVIMLDEAHERTIHTDVMFGLLKKVIKRRKNLKVIVTSATLDAVKFSSY 692

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR +P+++ Y    E D   +        I ++ I   + P    GD+L
Sbjct: 693  FFE-APIFTIPGRTFPVEIMYTKEPETDYLDAS------LITVMQIHLSEPP----GDIL 741

Query: 430  IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
            +F++G  EI +    +    ++        I+LP++S L  E Q R+F  AP G RK ++
Sbjct: 742  LFLTGQEEIDTSSEILFERMKQLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKIVI 801

Query: 486  STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
            +TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGPG
Sbjct: 802  ATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLLVTPISQAQAKQRAGRAGRTGPG 861

Query: 546  VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
              YRLY+E  Y   + + + PEI+R ++ + +LSL  MG+ D+  F F++ PP E + ++
Sbjct: 862  KAYRLYTERAYRDEMLQTNVPEIQRTNMATTVLSLKAMGINDLLAFDFMDPPPMETLITA 921

Query: 605  VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            + SL Q GA+D +  +T LGR +++ P+D  L KML+        D +L++ ++L+VQ+ 
Sbjct: 922  MESLYQLGALDDEGLLTRLGRRMAEFPLDPMLCKMLIMSVQLGCSDEILTIVSMLNVQNV 981

Query: 665  FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
            F     +    +  + +     GD LT+L  Y  W    K+   S  WC
Sbjct: 982  FYRPKEKQQVADQRKSKFHQPEGDHLTLLTVYNAW----KNNKFSNAWC 1026



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---I 83
           T + I+E +  LP+ + + +++  V   +++I+ G+TG GK+TQI QYL ++G      I
Sbjct: 518 TNLTIKEQREGLPIFKLRDQLLQAVEDNQILIVIGETGSGKTTQITQYLAESGLSTLGII 577

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A +S++KRVA E   Q    VGY IRFE     +TKI ++T+G+LLR+
Sbjct: 578 GCTQPRRVAAMSVAKRVAEECGVQLGQEVGYSIRFEDCTSPETKIKYMTDGMLLRE 633



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 1/122 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG  YRLY+E  Y   + + + PEI+R ++ + +LSL  MG+ D+  F F++ PP 
Sbjct: 856 GRTGPGKAYRLYTERAYRDEMLQTNVPEIQRTNMATTVLSLKAMGINDLLAFDFMDPPPM 915

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
           E + +++ SL Q GA+D +  +T LGR +++ P+D  L KML+        D +L +   
Sbjct: 916 ETLITAMESLYQLGALDDEGLLTRLGRRMAEFPLDPMLCKMLIMSVQLGCSDEILTIVSM 975

Query: 927 LN 928
           LN
Sbjct: 976 LN 977



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 37/57 (64%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  LS Y V++LDE HER +H D + G++K ++     +K+I+ SAT++   F +YF
Sbjct: 637  DTDLSRYSVIMLDEAHERTIHTDVMFGLLKKVIKRRKNLKVIVTSATLDAVKFSSYF 693


>gi|374620239|ref|ZP_09692773.1| ATP-dependent helicase HrpA [gamma proteobacterium HIMB55]
 gi|374303466|gb|EHQ57650.1| ATP-dependent helicase HrpA [gamma proteobacterium HIMB55]
          Length = 1248

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 144/360 (40%), Positives = 223/360 (61%), Gaps = 19/360 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L +YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 126 TELTKDRQLKAYDTLIIDEAHERSLNIDFILGYLKRLLPKRPDLKVIITSATIDVERFSK 185

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID----KKYPRTE 424
           +FN  A II+V GR YP+++ Y   VE DR      D G   ++  +ID    +KY    
Sbjct: 186 HFND-APIIEVSGRTYPVEVHYLDAVE-DR------DRGVQRQVSELIDEIEAQKY--GP 235

Query: 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           RGDVL+F  G  +I  + +A +  +       VLPL++ LS  EQ+RVF+ +  G+R  +
Sbjct: 236 RGDVLVFCPGERQIRDLAKALRGRDRIQ----VLPLYARLSNAEQNRVFNRSGSGMR-VV 290

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TN+AETS+T+ GIR+V+D G  +   Y   + +  L    IS+ASA QRKGR GR   
Sbjct: 291 LATNVAETSLTVPGIRYVIDPGDARVSRYSHRSGLQRLPIEPISQASANQRKGRCGRVAE 350

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           GVC+RLYSE+ +    E++  EI R ++ S++L ++ +GLGDVR+FPF++ P ++ +   
Sbjct: 351 GVCFRLYSEQDFLSRPEFTDAEILRTNLASVILRMLELGLGDVRQFPFVDPPESKMVRDG 410

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            R LT+ GA+D+  ++T LGR ++ LPVD  LG++L+  +    ++  L + + LSVQ P
Sbjct: 411 FRLLTELGAVDTDAKLTHLGRAMAKLPVDPKLGRILLDAASRDCLNEALVIVSALSVQDP 470



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 83/130 (63%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC+RLYSE+ +    E++  EI R ++ S++L ++ +GLGDVR+FPF++ P ++
Sbjct: 346 GRVAEGVCFRLYSEQDFLSRPEFTDAEILRTNLASVILRMLELGLGDVRQFPFVDPPESK 405

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            +    R LT+ GA+D+  ++T LGR ++ LPVD  LG++L+  +    ++  L++  AL
Sbjct: 406 MVRDGFRLLTELGAVDTDAKLTHLGRAMAKLPVDPKLGRILLDAASRDCLNEALVIVSAL 465

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 466 SVQ--DPRER 473



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACI 94
           LPV   K EI+  + + +VV++AG+TG GK+TQ+P+  ++ G    +RI  TQPRRIA  
Sbjct: 23  LPVVARKDEIMRAIAEHQVVVVAGETGSGKTTQLPKMCLELGRGREKRIGHTQPRRIAAR 82

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           ++S R+A E  +    LVGYQ+RF     ++T +  +T+G+LL
Sbjct: 83  AVSSRIAEELRTDVGGLVGYQVRFNDQVSDQTAVKVMTDGILL 125



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L +YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++E F  
Sbjct: 126  TELTKDRQLKAYDTLIIDEAHERSLNIDFILGYLKRLLPKRPDLKVIITSATIDVERFSK 185

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 186  HFNDAPIIEVSGRT 199


>gi|348562514|ref|XP_003467055.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Cavia porcellus]
          Length = 1219

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 238/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 668  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRPDMKLIVTSATLDAVKFSQY 727

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D   +        I ++ I   + P    GD+L
Sbjct: 728  FYE-APIFTIPGRTYPVEILYTKEPETDYLDAS------LITVMQIHLTEPP----GDIL 776

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 777  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 835

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 836  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 895

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 896  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 955

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 956  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1015

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1016 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1071

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1072 RRAQDIR---KQMLG 1083



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 5/140 (3%)

Query: 3   PALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGD 62
           P+   EWK     +   K      T + I E +  LP+ + K +++  V   +++I+ G+
Sbjct: 531 PSDIPEWKK--HAFGGNKASYGKKTQLSIVEQREGLPIYRLKGQLVQAVHDNQILIVIGE 588

Query: 63  TGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE 119
           TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IRFE
Sbjct: 589 TGSGKTTQITQYLAEAGYTARGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFE 648

Query: 120 KHRREKTKIVFITEGLLLRQ 139
                +T I ++T+G+LLR+
Sbjct: 649 DCTSPETVIKYMTDGMLLRE 668



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 1/117 (0%)

Query: 808  SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
             RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP 
Sbjct: 891  GRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPM 950

Query: 867  ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            E + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 951  ETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1007



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 672  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRPDMKLIVTSATLDAVKFSQYF 728


>gi|348690721|gb|EGZ30535.1| hypothetical protein PHYSODRAFT_553525 [Phytophthora sojae]
          Length = 1165

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 152/436 (34%), Positives = 239/436 (54%), Gaps = 24/436 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E  AD  LS Y  L+LDE HER ++ D L G++K L+    ++KII+ SAT++ E F  Y
Sbjct: 614  EYLADPTLSKYSALMLDEAHERTINTDVLFGLLKDLVRKRKDLKIIVTSATLDAEKFSRY 673

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F     I  +PGR +P+++ Y    ELD   +          +L ++       E GD+L
Sbjct: 674  FFDCP-IFTIPGRTFPVEILYTKEPELDYLDAS---------LLCVMQIHLSEPE-GDIL 722

Query: 430  IFMSGISEISSI-------VRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRK 482
            +F++G  EI +        ++A QE     +  I+LP++  L  E Q R+F  AP+G RK
Sbjct: 723  LFLTGQEEIDTACEVLYQRIKALQERALAPE-LIILPVYGALPSEMQSRIFEPAPKGSRK 781

Query: 483  CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542
            C+V+TNIAE S+TIDGI +VVD G  K+ +++    M +L     S+ASA QR GRAGRT
Sbjct: 782  CVVATNIAEASLTIDGIYYVVDPGFCKQNAFNSKIGMDSLVVVPCSQASARQRAGRAGRT 841

Query: 543  GPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENI 601
            GPG CYRLY+E  Y + +   + PEI+R ++ S++L L  MG+ D+  F F++ PP + +
Sbjct: 842  GPGKCYRLYTENAYKNEMLPTTVPEIQRANLGSVVLQLKAMGINDLMGFDFMDPPPQDAL 901

Query: 602  ESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
              ++ +L   GA+D +  +T LG+ +++ PV+    K+L+   +    + VL++ A+LSV
Sbjct: 902  VMALENLYALGALDDEGLLTRLGKKMAEFPVEPKNAKVLLTSVVLGCAEEVLTIVAMLSV 961

Query: 662  QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQ 721
            +S F     +    +  + +     GD LT+L  Y+ W   K     S  WC    I+ +
Sbjct: 962  ESVFFRPKEKQAQADQKKAKFHQPEGDHLTLLAVYEAWANSK----FSNPWCYENFIQAR 1017

Query: 722  RFYEVTKLRSQFKQVL 737
                   +R Q   +L
Sbjct: 1018 AIRRAQDVRKQLLSIL 1033



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 72/112 (64%), Gaps = 3/112 (2%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQ 87
           I E + SLPV + K++++  +   +V+++ G+TG GK+TQ+ QY+ + G      I CTQ
Sbjct: 503 ILEQRESLPVFKLKRQLMKAIADNQVLVVIGETGSGKTTQMTQYMAEMGLTSTGIIGCTQ 562

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           PRR+A  S++KRVA E   +    VGY +RFE     +T I ++TEG+LLR+
Sbjct: 563 PRRVAASSVAKRVAEEFGCELGQEVGYSMRFEDVTSPETVIKYMTEGMLLRE 614



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 65/102 (63%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y + +   + PEI+R ++ S++L L  MG+ D+  F F++ PP +
Sbjct: 840 RTGPGKCYRLYTENAYKNEMLPTTVPEIQRANLGSVVLQLKAMGINDLMGFDFMDPPPQD 899

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            +  ++ +L   GA+D +  +T LG+ +++ PV+    K+L+
Sbjct: 900 ALVMALENLYALGALDDEGLLTRLGKKMAEFPVEPKNAKVLL 941



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            AD  LS Y  L+LDE HER ++ D L G++K L+    ++KII+ SAT++ E F  YF
Sbjct: 617  ADPTLSKYSALMLDEAHERTINTDVLFGLLKDLVRKRKDLKIIVTSATLDAEKFSRYF 674


>gi|387018198|gb|AFJ51217.1| ATP-dependent RNA helicase DHX8-like isoform 1 [Crotalus adamanteus]
          Length = 1182

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 631  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 690

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 691  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 739

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 740  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 798

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 799  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 858

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 859  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 918

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 919  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 978

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 979  VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1034

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1035 RRAQDIR---KQMLG 1046



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 83/142 (58%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T + I E + SLP+ + K ++I  V   +++I+ 
Sbjct: 492 MMPNDIPEWKK--HAFGGNKASYGKKTQLSIIEQRESLPIFRLKDQLIQAVHDNQILIVI 549

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 550 GETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 609

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 610 FEDCTSPETVIKYMTDGMLLRE 631



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 855 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 914

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 915 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 970



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 635  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 691


>gi|312172460|emb|CBX80717.1| ATP-dependent helicase HrpA [Erwinia amylovora ATCC BAA-2158]
          Length = 1299

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 245/445 (55%), Gaps = 26/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 180 AEIQQDRLLLQYDTIIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A +I+V GR YP+++ Y P+VE    +++  D      I   +D+   R  RGD+
Sbjct: 240 HFHN-APVIEVSGRTYPVEVRYRPVVE----EADDSDRDQLQAIFDAVDE-LGRESRGDI 293

Query: 429 LIFMSGISEI----SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           LIFMSG  EI     ++++    + E      VLPL++ LS  EQ+RVF       R+ +
Sbjct: 294 LIFMSGEREIRDTADALIKRDLPHTE------VLPLYARLSNAEQNRVFQ--SHAGRRIV 345

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   
Sbjct: 346 LATNVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEAISQASANQRKGRCGRVSE 405

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G+C RLY+E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  
Sbjct: 406 GICIRLYAEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDISAFPFVEAPDRRNIQDG 465

Query: 605 VRSLTQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           VR L + GAI    +   R+T  GR L+ LPVD  L KM++    F  +   + + A LS
Sbjct: 466 VRLLEELGAITLADNHHYRLTPSGRALAQLPVDPRLAKMVLEAQKFGCVREAMIITAALS 525

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P    A +    +   +       D +  +N +  WL  ++  + S   ++ CK   
Sbjct: 526 IQDPRERPADKKQASDEKHQRFADKESDFIAFVNLWN-WLQEQQKALSSSQFRRQCKADY 584

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + GL
Sbjct: 585 LNYLRVREWQDIYTQLRQVVRELGL 609



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLY+E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYAEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDISAFPFVEAPDRR 460

Query: 868 NIESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI+  VR L + GAI    +   R+T  GR L+ LPVD  L KM++    F  +   +++
Sbjct: 461 NIQDGVRLLEELGAITLADNHHYRLTPSGRALAQLPVDPRLAKMVLEAQKFGCVREAMII 520

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 521 TAALSIQ--DPRER 532



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 71/110 (64%), Gaps = 4/110 (3%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQ 87
           IR  +N LPV+Q KQEI + +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQ
Sbjct: 71  IRYPEN-LPVSQKKQEIANAIRTSQVVIVAGETGSGKTTQLPKICLELGRGIRGLIGHTQ 129

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           PRR+A  ++++R+A E        VGY++RF  H  + T++  +T+G+LL
Sbjct: 130 PRRLAARTVAERIAAELEISLGGCVGYKVRFNDHVGDTTQVKLMTDGILL 179



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 180  AEIQQDRLLLQYDTIIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 240  HFHNAPVIEVSGRT 253


>gi|319942242|ref|ZP_08016557.1| ATP-dependent helicase HrpA [Sutterella wadsworthensis 3_1_45B]
 gi|319804115|gb|EFW01015.1| ATP-dependent helicase HrpA [Sutterella wadsworthensis 3_1_45B]
          Length = 1242

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 152/442 (34%), Positives = 246/442 (55%), Gaps = 24/442 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D  L +YD +++DE HER ++ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 107 AETQGDPLLKAYDTIIIDEAHERSINIDFLLGYLKRLLPKRPDLKVIVTSATIDAERFAN 166

Query: 369 YF---NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE- 424
           +F    + A ++ + GR YP+++ + P+ + D      +        L+ ID      E 
Sbjct: 167 HFAVNGKPAPVLTISGRTYPVEIRWRPVEDRDEDDDRTM--------LAAIDDAVSECEM 218

Query: 425 --RGDVLIFMSGISEISSIVRAAQEYNEKSQGWI-VLPLHSTLSLEEQDRVFHYAPEG-L 480
             RGD+L+F+ G  EI++   AA+E      G   +LPL++ LS  +QD++F   P G +
Sbjct: 219 SGRGDILVFLPGEREINA---AAEELRRSRIGKAEILPLYARLSAADQDKIFK--PSGNM 273

Query: 481 RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540
           R+ +++TN+AETS+T+ GIR+VVD+G  +   Y   +K+  L    IS+ASA QR GR G
Sbjct: 274 RRIVLATNVAETSVTVPGIRYVVDTGYARIKRYSYRSKVEQLLVEPISQASANQRSGRCG 333

Query: 541 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 600
           R   G+C RLYSEE ++    ++ PEI R ++ +++L    + LGDVR+FPF++APP + 
Sbjct: 334 RVAEGICIRLYSEEDFARRPAFTDPEIMRSNLAAVILRAKALRLGDVREFPFVQAPPPKA 393

Query: 601 IESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
                  L + GAI     +T +GR LS LP+D  LG+ML+ G+    +  +L +A+ LS
Sbjct: 394 FADGFAILQELGAISEDNELTEVGRSLSRLPIDPKLGRMLLEGARRGALRELLIVASGLS 453

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRG 717
           VQ P    A +    + A K+L     D L+ +  +      +  +  ++K+    KRR 
Sbjct: 454 VQDPRERPAEQQQAADEAHKKLADERSDFLSYVKLWDWAEAARASKESNRKYDQELKRRF 513

Query: 718 IEEQRFYEVTKLRSQFKQVLGD 739
           +  +R  E  ++  Q K ++ D
Sbjct: 514 LSPRRLREWREVMGQLKALVDD 535



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE ++    ++ PEI R ++ +++L    + LGDVR+FPF++APP +
Sbjct: 333 GRVAEGICIRLYSEEDFARRPAFTDPEIMRSNLAAVILRAKALRLGDVREFPFVQAPPPK 392

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
                   L + GAI     +T +GR LS LP+D  LG+ML+ G+    +  +L+  +A 
Sbjct: 393 AFADGFAILQELGAISEDNELTEVGRSLSRLPIDPKLGRMLLEGARRGALRELLI--VAS 450

Query: 928 NFGAIDSKER 937
                D +ER
Sbjct: 451 GLSVQDPRER 460



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 3/109 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
            LPV++   +++  + + +VVI+ G+TG GK+TQ+P+  + AG     RI  TQPRRIA 
Sbjct: 3   GLPVSERAADVVKAIKENQVVIVCGETGSGKTTQLPKICLMAGRGETGRIGHTQPRRIAA 62

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
            S++KR+A E  +   ++VGY++RF         I  +T+G+LL +  G
Sbjct: 63  SSIAKRIAEELKTPLGDVVGYKVRFTDQTASGATIKLMTDGILLAETQG 111



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 40/62 (64%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D  L +YD +++DE HER ++ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 107  AETQGDPLLKAYDTIIIDEAHERSINIDFLLGYLKRLLPKRPDLKVIVTSATIDAERFAN 166

Query: 1174 YF 1175
            +F
Sbjct: 167  HF 168


>gi|242767257|ref|XP_002341334.1| ATP dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724530|gb|EED23947.1| ATP dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 670

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 249/457 (54%), Gaps = 34/457 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  LS Y V+++DE HER +  D LLG++K ++    E++II+ SAT+  E F  +
Sbjct: 127 EALVDPLLSRYSVIMVDEAHERSISTDILLGILKKIMKKRPELRIIISSATLQAEQFLRF 186

Query: 370 F---------------NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILS 414
           F                 + +II + GR+YP+ + +     L+    E ++     R + 
Sbjct: 187 FCGDKAIIEGQGEELGGDVGRIISLEGRMYPVDILF-----LESPAEEYVE-----RAIK 236

Query: 415 IIDKKYPRTERGDVLIFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQD 470
            +   + + + GD+LIF++G  EI   V+   E     + K++  + LPL++ L+ E+Q 
Sbjct: 237 TVFDIHSQEDEGDILIFLTGREEIEQTVQMISERAAMLHPKAKSLLPLPLYAGLTTEQQM 296

Query: 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKA 530
            +F   PE  RK +VSTNIAE S+TIDG+ FV+D G VK  +Y+    + TL    ISKA
Sbjct: 297 YIFEPTPENTRKVVVSTNIAEASVTIDGVVFVIDCGFVKIRAYNPKTGIETLTATPISKA 356

Query: 531 SAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF 590
           SA QR GRAGRT PG C+RLY++  Y  L +   PEI+R ++  +++ L  +G+ +V +F
Sbjct: 357 SATQRAGRAGRTKPGKCFRLYTQHSYEALPDMGIPEIQRSNLAPVVMQLKALGIDNVVRF 416

Query: 591 PFLEAPPAENIESSVRSLTQHGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQI 649
            FL  PPAE +  ++  L   GA+D   ++T   G  +++L V+  L K+L+  S F+ +
Sbjct: 417 DFLSPPPAELMTRALELLYSLGAVDDYAKLTKPTGYRMAELGVEPMLAKVLLSASSFNCL 476

Query: 650 DTVLSLAAVLSVQ-SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR 708
             +LS+AA+LS+Q S +        + E AR++     GD +T LN Y+ ++   K   +
Sbjct: 477 SEILSIAAMLSLQGSLWVQHDGGKDETEGARRKFAVEEGDHMTYLNVYQAFITNGK---K 533

Query: 709 SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITD 745
             KWC+   +  +       +R+Q K+ L   GL  D
Sbjct: 534 DSKWCRDNLLNYKSLTRAVSVRAQLKRYLERFGLEVD 570



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 69/106 (65%), Gaps = 4/106 (3%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACTQPRRIAC 93
           L +A+Y+++++  +    V I+ G TG GK+TQ+PQ+L QAG+    + I  TQPRR+A 
Sbjct: 22  LSIARYREKLLYLIEAFPVTIVVGQTGSGKTTQLPQFLDQAGWTADGKVIGVTQPRRVAA 81

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            ++++RVA E   +    VGY IRFE      T+I F+T+GLLLR+
Sbjct: 82  TTVARRVADEMRCKLGEEVGYSIRFEDVTSAATRIKFLTDGLLLRE 127



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 70/122 (57%), Gaps = 1/122 (0%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           RT PG C+RLY++  Y  L +   PEI+R ++  +++ L  +G+ +V +F FL  PPAE 
Sbjct: 367 RTKPGKCFRLYTQHSYEALPDMGIPEIQRSNLAPVVMQLKALGIDNVVRFDFLSPPPAEL 426

Query: 869 IESSVRSLTQHGAIDSKERVTT-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           +  ++  L   GA+D   ++T   G  +++L V+  L K+L+  S F+ +  +L +   L
Sbjct: 427 MTRALELLYSLGAVDDYAKLTKPTGYRMAELGVEPMLAKVLLSASSFNCLSEILSIAAML 486

Query: 928 NF 929
           + 
Sbjct: 487 SL 488



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPKQV---QVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            EE G  +   D      R+K     +   +   D  LS Y V+++DE HER +  D LLG
Sbjct: 98   EEVGYSIRFEDVTSAATRIKFLTDGLLLREALVDPLLSRYSVIMVDEAHERSISTDILLG 157

Query: 1146 VIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            ++K ++    E++II+ SAT+  E F  +F
Sbjct: 158  ILKKIMKKRPELRIIISSATLQAEQFLRFF 187


>gi|92113593|ref|YP_573521.1| ATP-dependent helicase HrpA [Chromohalobacter salexigens DSM 3043]
 gi|91796683|gb|ABE58822.1| ATP-dependent helicase HrpA [Chromohalobacter salexigens DSM 3043]
          Length = 1325

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 171/503 (33%), Positives = 263/503 (52%), Gaps = 41/503 (8%)

Query: 278 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337
            Y V   D+  ER L      G++        E   D  L  Y+ +++DE HER L+ DF
Sbjct: 160 GYQVRFTDQTDERTLVKLMTDGIL------LAETQNDPDLMRYEAIIIDEAHERSLNIDF 213

Query: 338 LLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAK---IIKVPGRLYPIQLEYHPIV 394
           LLG +K L     ++KII+ SATI++E F  +F R  K   +++V GR YP+ + Y P+V
Sbjct: 214 LLGYLKRLTERRPDLKIIITSATIDVERFSHHFGRDGKPAPVVEVSGRTYPVDVFYRPLV 273

Query: 395 -----ELDRTKSEKLDPGPYIRILSIIDKKY-----PRTERGDVLIFMSGISEISSIVRA 444
                E DRT  E +     +  +  I+++      PR    DVLIF+ G  EI      
Sbjct: 274 RDADDEEDRTLQEGILHA--VEEVETIERERRWYSGPR----DVLIFLPGEREIRETADT 327

Query: 445 AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVD 504
            +  + K  G  +LPL++ LS  EQ+RVF   P   R+ +++TN+AETS+T+ GIR+V+D
Sbjct: 328 LRRADLK--GTEILPLYARLSNAEQNRVFQ--PHAGRRIVLATNVAETSLTVPGIRYVID 383

Query: 505 SGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYST 564
            G V+   Y   AK+  L    IS+ASA+QRKGR GR   GVC RLYSEE +     Y+ 
Sbjct: 384 PGLVRMSRYSYRAKVQRLPIEPISQASADQRKGRCGRISEGVCIRLYSEEDFLARPTYTE 443

Query: 565 PEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLG 624
           PEI+R ++ S++LS++ + LGD+  FPF++ P +  I+   R L + GA+ +  R++ LG
Sbjct: 444 PEIQRTNLASVILSMLALKLGDIEAFPFVDVPDSRFIKDGYRLLYELGAVGADNRLSELG 503

Query: 625 RFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELES 684
           R ++ LP+D  L +M + G+    +   L + + LS Q P    A +    +   ++ + 
Sbjct: 504 RRVARLPIDPRLARMALAGAEQGSLRETLIVVSALSTQDPRDRPADKRQAADEKHRQWQD 563

Query: 685 NHGDPLTVLNAYKEWLGVKKDR-----VRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGD 739
              D +  LN    W GV++ R      + ++WC+   +   R  E      Q KQ+  D
Sbjct: 564 PESDFMAWLNL---WHGVEQARETLSGNQLRRWCRDNYLSYLRLREWHDTFRQLKQLTRD 620

Query: 740 SGLITDI----PGPDASLSSRER 758
            GL        P  D + S+R R
Sbjct: 621 MGLEPSSAVLPPKEDDAASARPR 643



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 73/121 (60%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLYSEE +     Y+ PEI+R ++ S++LS++ + LGD+  FPF++ P + 
Sbjct: 419 GRISEGVCIRLYSEEDFLARPTYTEPEIQRTNLASVILSMLALKLGDIEAFPFVDVPDSR 478

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I+   R L + GA+ +  R++ LGR ++ LP+D  L +M + G+    +   L++  AL
Sbjct: 479 FIKDGYRLLYELGAVGADNRLSELGRRVARLPIDPRLARMALAGAEQGSLRETLIVVSAL 538

Query: 928 N 928
           +
Sbjct: 539 S 539



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 66/105 (62%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIA 92
           + LPV + +++++  +   +VV++AG+TG GK+TQ+P+  ++ G  R   I  TQPRR+A
Sbjct: 80  DDLPVVERREDLLAALDAHQVVVVAGETGSGKTTQLPKLCLELGLGRRGLIGHTQPRRLA 139

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E        VGYQ+RF     E+T +  +T+G+LL
Sbjct: 140 ARTVATRLAEELDVPLGAQVGYQVRFTDQTDERTLVKLMTDGILL 184



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  L  Y+ +++DE HER L+ DFLLG +K L     ++KII+ SATI++E F  +F R 
Sbjct: 190  DPDLMRYEAIIIDEAHERSLNIDFLLGYLKRLTERRPDLKIIITSATIDVERFSHHFGRD 249

Query: 1179 AK 1180
             K
Sbjct: 250  GK 251


>gi|241956141|ref|XP_002420791.1| RNA-dependent ATPase/ATP-dependent RNA helicase, putative;
           pre-mRNA-splicing factor ATP-dependent RNA helicase,
           putative [Candida dubliniensis CD36]
 gi|223644133|emb|CAX41876.1| RNA-dependent ATPase/ATP-dependent RNA helicase, putative [Candida
           dubliniensis CD36]
          Length = 1002

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 158/458 (34%), Positives = 241/458 (52%), Gaps = 22/458 (4%)

Query: 300 VIKCLLHSTVEVAA--DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357
           VIK +    +E  A  D  ++ Y V++LDE HER +  D L  ++K        +K+I+ 
Sbjct: 438 VIKYMTDGMLEREALNDPNMNRYSVIMLDEAHERTIATDVLFALLKNAAKQNPNLKVIVT 497

Query: 358 SATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID 417
           SAT++   F  YFN    II +PGR +P+++ Y    E+D   +           L  + 
Sbjct: 498 SATLDSNKFSRYFNN-CPIITIPGRTFPVEVLYTKAPEMDYLAA----------ALESVI 546

Query: 418 KKYPRTERGDVLIFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVF 473
           + +     GD+L+F++G  EI +   A  E      +     I+LP++S L  E Q R+F
Sbjct: 547 QIHVAEPAGDILVFLTGQEEIETSCEALHERMKLLGDNVPELIILPVYSALPSEMQTRIF 606

Query: 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAE 533
              P G RK I++TNIAETSITIDGI +VVD G VK   YD    M +L+   ISKA A 
Sbjct: 607 EPTPPGSRKVILATNIAETSITIDGIYYVVDPGFVKINMYDSKLGMDSLRVTPISKAQAN 666

Query: 534 QRKGRAGRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPF 592
           QR GRAGRTGPG CYRLY+E+ Y   +   + PEI+R ++   +L L  MG+ D+  F F
Sbjct: 667 QRSGRAGRTGPGKCYRLYTEQAYEKEMIPNTIPEIQRQNLSHTILMLKAMGIHDLVNFEF 726

Query: 593 LEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTV 652
           ++ P    + +++  L    A+D    +T+LGR ++DLP++  L K L+    +   + +
Sbjct: 727 MDPPSTTTMLTALEDLYILDALDDNGNLTTLGRKMADLPMEPALAKTLIQSVEYECTEEI 786

Query: 653 LSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW 712
           LS+ A+LSVQ+ F     +    +  +     + GD LT+LN ++ W         SK W
Sbjct: 787 LSIVAMLSVQTIFYRPKDKQALADQRKTRFHHSLGDHLTLLNVFQSWC----RNNYSKTW 842

Query: 713 CKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
           C+   I+E+      ++R Q K ++   G  T   G D
Sbjct: 843 CRDNFIQERSMRRAMEVRKQLKLIMHRFGYKTMSCGND 880



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 74/120 (61%), Gaps = 7/120 (5%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRI--- 83
           T + I+E +  LPV   + ++++ + + + V+I G+TG GK+TQI QY+ + G  +I   
Sbjct: 331 TSLPIQEQRCMLPVYAMRTQLVEAIRENQFVVIVGETGSGKTTQIVQYIYEEGMNKINGD 390

Query: 84  ----ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
                CTQPRR+A  S++KRV+ E   Q  + VGY IRFE    E T I ++T+G+L R+
Sbjct: 391 TKLIGCTQPRRVAAESVAKRVSEEVGCQLGDTVGYTIRFEDVTSENTVIKYMTDGMLERE 450



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E+ Y   +   + PEI+R ++   +L L  MG+ D+  F F++ P   
Sbjct: 674 RTGPGKCYRLYTEQAYEKEMIPNTIPEIQRQNLSHTILMLKAMGIHDLVNFEFMDPPSTT 733

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            + +++  L    A+D    +TTLGR ++DLP++  L K L+
Sbjct: 734 TMLTALEDLYILDALDDNGNLTTLGRKMADLPMEPALAKTLI 775



 Score = 47.4 bits (111), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  ++ Y V++LDE HER +  D L  ++K        +K+I+ SAT++   F  YFN  
Sbjct: 454  DPNMNRYSVIMLDEAHERTIATDVLFALLKNAAKQNPNLKVIVTSATLDSNKFSRYFNNC 513

Query: 1179 AKDLLSGST 1187
                + G T
Sbjct: 514  PIITIPGRT 522


>gi|444321324|ref|XP_004181318.1| hypothetical protein TBLA_0F02600 [Tetrapisispora blattae CBS 6284]
 gi|387514362|emb|CCH61799.1| hypothetical protein TBLA_0F02600 [Tetrapisispora blattae CBS 6284]
          Length = 765

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 170/483 (35%), Positives = 259/483 (53%), Gaps = 35/483 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D+ L+ Y  ++LDE HER L  D L+G++K ++    ++KII+MSAT++ E F  Y
Sbjct: 200 EAMEDHDLTRYSCIILDEAHERTLATDILMGLLKQVVQRRPDLKIIVMSATLDAEKFQRY 259

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           FN  A ++ VPGR +P+++ Y P  + D   S        IR +  I   +   E+GD+L
Sbjct: 260 FNN-APLLAVPGRTFPVEIYYTPEFQRDYLDSA-------IRTVLQI---HATEEKGDIL 308

Query: 430 IFMSGISEISSIVR-----AAQEYNEKSQGWI-VLPLHSTLSLEEQDRVFHYAPEGL--- 480
           +F++G  EI   VR       Q   E+  G + V PL+ +L   +Q R+F  APE     
Sbjct: 309 LFLTGEDEIEDAVRKISLEGDQLVREEGCGPLAVYPLYGSLPPHQQQRIFEPAPESHNGR 368

Query: 481 --RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
             RK ++STNIAETS+TIDGI +VVD G  K+  Y+   ++ +L    ISKAS++QR GR
Sbjct: 369 PGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASSQQRAGR 428

Query: 539 AGRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 597
           AGRT PG C+RLY+EE +   L E S PEI R ++ S +L L  +G+ D+  F F++ P 
Sbjct: 429 AGRTRPGKCFRLYTEEAFQRELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPA 488

Query: 598 AENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAA 657
            E +  ++  L     ++ +  +T+LGR  S  P+D  L  ML+  S FH    +L++ A
Sbjct: 489 PETMMRALEELNYLACLNDEGNLTALGRLASQFPLDPMLAVMLIGSSEFHCSQDILTIVA 548

Query: 658 VLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCK 714
           +LSV S F   A      + A+       GD +T+LN Y  +   K D   S    KWC+
Sbjct: 549 MLSVPSVFIRPAKSKKYADDAKNIFAHQDGDHITLLNVYHAF---KSDEAYSYGIHKWCR 605

Query: 715 RRGIEEQRFYEVTKLRSQFKQVLGDSGL---ITDIPGPDASLSSRERALRHGEIKLLQAI 771
              +  +       +R+Q ++++    L    TD   P    + R +AL  G    +QA 
Sbjct: 606 DHFLNYRSLSAADNIRTQLERLMTRYNLELNTTDYESPKYFENIR-KALASG--FFMQAA 662

Query: 772 KRK 774
           K++
Sbjct: 663 KKR 665



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 74/121 (61%), Gaps = 8/121 (6%)

Query: 24  KFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV-----QA 78
           K+  ++KIR     LPV   + E +    + ++++  G+TG GK+TQIPQ+++       
Sbjct: 83  KYFDILKIR---RELPVHAQRAEFLKIYQENQIMVFVGETGSGKTTQIPQFVLFDEMPHL 139

Query: 79  GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLR 138
              +IACTQPRR+A +S+++RVA E   +    VGY IRFE     KT + ++T+G+LLR
Sbjct: 140 ENTQIACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLR 199

Query: 139 Q 139
           +
Sbjct: 200 E 200



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RT PG C+RLY+EE +   L E S PEI R ++ S +L L  +G+ D+  F F++ P  E
Sbjct: 431 RTRPGKCFRLYTEEAFQRELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPE 490

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFH 915
            +  ++  L     ++ +  +T LGR  S  P+D  L  ML+  S FH
Sbjct: 491 TMMRALEELNYLACLNDEGNLTALGRLASQFPLDPMLAVMLIGSSEFH 538



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 12/133 (9%)

Query: 1056 KMLVFGSMFHQIDTMLLLD-----LALNFVHHSEEEEEEEAGE------RLESMDANEVE 1104
            + ++F  M H  +T +         A++      EE + + GE      R E+  +N+  
Sbjct: 129  QFVLFDEMPHLENTQIACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTI 188

Query: 1105 FRLKHDPKQVQVA-ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 1163
             +   D   ++ A  D+ L+ Y  ++LDE HER L  D L+G++K ++    ++KII+MS
Sbjct: 189  LKYMTDGMLLREAMEDHDLTRYSCIILDEAHERTLATDILMGLLKQVVQRRPDLKIIVMS 248

Query: 1164 ATINIELFHTYFN 1176
            AT++ E F  YFN
Sbjct: 249  ATLDAEKFQRYFN 261


>gi|336314167|ref|ZP_08569087.1| ATP-dependent helicase HrpA [Rheinheimera sp. A13L]
 gi|335881430|gb|EGM79309.1| ATP-dependent helicase HrpA [Rheinheimera sp. A13L]
          Length = 1306

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 160/444 (36%), Positives = 248/444 (55%), Gaps = 30/444 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D FL+ YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 191 AEIQQDRFLNQYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDPERFSK 250

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F   A II+V GR YP++  Y P+ E D   +++L       I   +++ Y R   GD+
Sbjct: 251 HFFD-APIIEVSGRTYPVETRYRPLAENDDKDADQLQ-----SIFDAVEELY-REPPGDI 303

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF--HYAPEGLRKCIVS 486
           LIF++G  EI     A ++   K     VLPL++ LS  EQ+ +F  H      R+ ++S
Sbjct: 304 LIFLNGEREIRDTADALEKL--KLPHTEVLPLYARLSAAEQNLIFQNHVG----RRIVLS 357

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GIR+V+D G V+   Y   +K+  L    +S+ASA QRKGR GR   G+
Sbjct: 358 TNVAETSLTVPGIRYVIDPGTVRISRYSYRSKVQQLPIEAVSQASANQRKGRCGRVAAGI 417

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSEE ++   E++ PEI R ++ S++L ++ +GLGD++ FPFLE P +  I   ++
Sbjct: 418 CIRLYSEEDFNGRPEFTDPEILRTNLASVILQMLALGLGDIQAFPFLERPDSRFINDGIK 477

Query: 607 SLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            L + GA+  +      ++T LGR +S LPVD  L +M+   +    +  VL + + LS+
Sbjct: 478 LLEELGAVKPQSNSHSLQMTDLGRQISRLPVDPRLARMVFAATEHSCLQEVLVIVSALSI 537

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAY-KEW--LGVKKDRVRSKKW---CKR 715
           Q P      R  D +    EL     DP +  +A+ K W  L  K+D + + ++   CK+
Sbjct: 538 QDPRE----RPLDKQQKADELHGRFADPDSDFSAWLKLWAYLQEKQDELTNNQFRRLCKQ 593

Query: 716 RGIEEQRFYEVTKLRSQFKQVLGD 739
             +   R  E   L  Q  Q+  +
Sbjct: 594 ELLNYLRVREWQDLFGQLSQICSE 617



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 84/148 (56%), Gaps = 11/148 (7%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSEE ++   E++ PEI R ++ S++L ++ +GLGD++ FPFLE P + 
Sbjct: 411 GRVAAGICIRLYSEEDFNGRPEFTDPEILRTNLASVILQMLALGLGDIQAFPFLERPDSR 470

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
            I   ++ L + GA+  +      ++T LGR +S LPVD  L +M+   +    +  +L+
Sbjct: 471 FINDGIKLLEELGAVKPQSNSHSLQMTDLGRQISRLPVDPRLARMVFAATEHSCLQEVLV 530

Query: 923 LDLALNFG-----AIDSKERVTSL-GRF 944
           +  AL+        +D +++   L GRF
Sbjct: 531 IVSALSIQDPRERPLDKQQKADELHGRF 558



 Score = 80.1 bits (196), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 69/127 (54%), Gaps = 13/127 (10%)

Query: 24  KFSTLMKIR----------ETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ 73
           K +T M++R          E    LPV   K +I   + K +VVIIAG+TG GK+TQIP+
Sbjct: 64  KIATSMQLRAQRLAAMPTIEYPAELPVVGKKDDIKAAIAKHQVVIIAGETGSGKTTQIPK 123

Query: 74  YLVQAG---FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVF 130
             ++ G      I  TQPRR+A  S+S R+A E        VGY+IRF  H    T +  
Sbjct: 124 ICLELGRGVAGMIGHTQPRRLAARSVSARLAEELKCSVGQQVGYKIRFGDHTAPTTLVKL 183

Query: 131 ITEGLLL 137
           +T+G+LL
Sbjct: 184 MTDGVLL 190



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D FL+ YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 191  AEIQQDRFLNQYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDPERFSK 250

Query: 1174 YF 1175
            +F
Sbjct: 251  HF 252



 Score = 41.6 bits (96), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++  D FL+ YD +I+DE HER L  DFLLG +
Sbjct: 191 AEIQQDRFLNQYDTIIIDEAHERSLNIDFLLGYL 224


>gi|170085647|ref|XP_001874047.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651599|gb|EDR15839.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1163

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 236/434 (54%), Gaps = 23/434 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D   SSY V++LDE HER +  D L G++K  +    ++K+I+ SAT++ E F  Y
Sbjct: 605  ECLIDPLCSSYSVVMLDEAHERTIATDVLFGLLKKAVKRRPDLKLIVTSATLDAEKFSKY 664

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F     I  +PGR YP+++ Y         +S+ LD    I ++ I   + P    GD+L
Sbjct: 665  FFGCP-IFTIPGRTYPVEILY-----TKEPESDYLD-ASLITVMQIHLSEPP----GDIL 713

Query: 430  IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
            +F++G  EI +    +    +    K    ++LP++S L  E Q RVF   P G RK ++
Sbjct: 714  LFLTGQEEIDTACEILFERMKALGPKVPELLILPIYSALPSEVQSRVFEPTPPGARKVVI 773

Query: 486  STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
            +TN+AETS+TI GI +V+D G  K+ +YD    M +L    IS+A A QR GRAGRTGPG
Sbjct: 774  ATNVAETSLTIPGIYYVIDPGFSKQNAYDPKLGMDSLVVMPISQAQARQRSGRAGRTGPG 833

Query: 546  VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
             CYRLY+E  Y + +   S P+I+R ++ + +L L  MG+ D+  F F++ PPA  + ++
Sbjct: 834  KCYRLYTEAAYRNEMLPNSIPDIQRTNLAATILQLKAMGVNDLLSFDFMDPPPAPTMLTA 893

Query: 605  VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            + SL    A+D +  +T LGR ++D P++ PL KML+        + +LS+ A+LSVQS 
Sbjct: 894  LESLYALSALDDEGLLTRLGRKMADFPMEPPLAKMLIASVELGCSEEILSIVAMLSVQSV 953

Query: 665  FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
            F     +    ++ + +     GD LT+L  Y  W    K    S  WC    I+ +   
Sbjct: 954  FYRPKEKQGQADSKKAKFHQPEGDHLTLLTVYNGW----KAANFSNPWCYENFIQARSMR 1009

Query: 725  EVTKLRSQFKQVLG 738
                +R   KQ+LG
Sbjct: 1010 RAQDVR---KQLLG 1020



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 78/116 (67%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RI 83
           T + I++ + SLP+ + +  ++  + + +V+I+ GDTG GK+TQ+ QYL ++G+    RI
Sbjct: 490 TSLSIQDQRKSLPIYKLRDPLLKAIEEHQVLIVVGDTGSGKTTQMVQYLAESGYAERGRI 549

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A +S++KRV+ E   +    VGY IRFE     +T+I ++T+G+L R+
Sbjct: 550 GCTQPRRVAAMSVAKRVSEEVGCRLGQEVGYTIRFEDCTSPETRIKYMTDGMLQRE 605



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 66/102 (64%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y + +   S P+I+R ++ + +L L  MG+ D+  F F++ PPA 
Sbjct: 829 RTGPGKCYRLYTEAAYRNEMLPNSIPDIQRTNLAATILQLKAMGVNDLLSFDFMDPPPAP 888

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            + +++ SL    A+D +  +T LGR ++D P++ PL KML+
Sbjct: 889 TMLTALESLYALSALDDEGLLTRLGRKMADFPMEPPLAKMLI 930



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPK---QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            +E G  +   D    E R+K+      Q +   D   SSY V++LDE HER +  D L G
Sbjct: 576  QEVGYTIRFEDCTSPETRIKYMTDGMLQRECLIDPLCSSYSVVMLDEAHERTIATDVLFG 635

Query: 1146 VIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            ++K  +    ++K+I+ SAT++ E F  YF
Sbjct: 636  LLKKAVKRRPDLKLIVTSATLDAEKFSKYF 665


>gi|429201227|ref|ZP_19192708.1| ATP-dependent helicase HrpA [Streptomyces ipomoeae 91-03]
 gi|428663243|gb|EKX62618.1| ATP-dependent helicase HrpA [Streptomyces ipomoeae 91-03]
          Length = 1314

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 156/447 (34%), Positives = 244/447 (54%), Gaps = 28/447 (6%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 181 AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR 240

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRTERG 426
           +F   A I++V GR YP+++ Y P++E D   +++       +I +I D  ++     +G
Sbjct: 241 HFGD-APIVEVSGRTYPVEVRYRPLLEEDSDDADR------DQITAICDAVEELMAEGKG 293

Query: 427 DVLIFMSGISEI----SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRK 482
           D+L+F+SG  EI     +++R    + E      VLPL++ LS  EQ RVF   P   R+
Sbjct: 294 DILVFLSGEREIRDTADALIRKQYRFTE------VLPLYARLSHAEQHRVFQ--PHTGRR 345

Query: 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542
            +++TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT
Sbjct: 346 IVLATNVAETSLTVPGIKYVIDPGFARISRYSHRTKVQRLPIEPISQASANQRKGRCGRT 405

Query: 543 GPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
             GVC RLYSEE +    E++  EI R ++ S++L +   GLGD+ KFPF++ P   NI 
Sbjct: 406 SDGVCIRLYSEEDFDARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIR 465

Query: 603 SSVRSLTQHGAIDS-----KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAA 657
             V+ L + GA+D      ++R+T +GR L+ LPVD  L +M+V          V+ +AA
Sbjct: 466 DGVQLLQELGALDPAQKDVRKRLTPMGRKLAQLPVDPRLARMVVEADKNGCAREVMVIAA 525

Query: 658 VLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKR 715
            LS+Q P      +    +           D L  LN ++     +K+R  S  ++ CK+
Sbjct: 526 ALSIQDPRERPVDKQTQADQQHARFRDESSDFLAFLNLWRYIREQQKERGSSSFRRMCKQ 585

Query: 716 RGIEEQRFYEVTKLRSQFKQVLGDSGL 742
             +   R  E   + SQ + V    G+
Sbjct: 586 EYLNFLRIREWQDIYSQLRTVAKQMGI 612



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  GVC RLYSEE +    E++  EI R ++ S++L +   GLGD+ KFPF++ P   
Sbjct: 403 GRTSDGVCIRLYSEEDFDARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHR 462

Query: 868 NIESSVRSLTQHGAIDS-----KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI   V+ L + GA+D      ++R+T +GR L+ LPVD  L +M+V          +++
Sbjct: 463 NIRDGVQLLQELGALDPAQKDVRKRLTPMGRKLAQLPVDPRLARMVVEADKNGCAREVMV 522

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 523 IAAALSIQ--DPRER 535



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
            LPV+Q K +I D +   +VVI+AG+TG GK+TQIP+  ++ G      I  TQPRRIA 
Sbjct: 76  QLPVSQKKDDIADAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGMIGHTQPRRIAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLL 137
            ++++RVA E  +     VG+++RF ++   + T +  +T+G+LL
Sbjct: 136 RTVAERVAEELDTPLGEAVGWKVRFTDQVDPDATFVKLMTDGILL 180



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 181  AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR 240

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 241  HFGDAPIVEVSGRT 254


>gi|290959206|ref|YP_003490388.1| ATP-dependent helicase [Streptomyces scabiei 87.22]
 gi|260648732|emb|CBG71845.1| ATP-dependent helicase [Streptomyces scabiei 87.22]
          Length = 1325

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 243/437 (55%), Gaps = 20/437 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 181 AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR 240

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID--KKYPRTERG 426
           +F   A I++V GR YP+++ Y P++E D   +++       +I +I D  ++     +G
Sbjct: 241 HFGD-APIVEVSGRTYPVEVRYRPLLEEDGDDADR------DQITAICDAVEELQGEGKG 293

Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
           D+L+F+SG  EI     A  + N +     VLPL++ LS  EQ RVF   P   R+ +++
Sbjct: 294 DILVFLSGEREIRDTADALIKKNYRFTE--VLPLYARLSHAEQHRVFQ--PHTGRRIVLA 349

Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
           TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  GV
Sbjct: 350 TNVAETSLTVPGIKYVIDPGFARISRYSHRTKVQRLPIEAISQASANQRKGRCGRTSDGV 409

Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
           C RLYSE+ +    E++  EI R ++ S++L +   GLGD+ KFPF++ P   NI   V+
Sbjct: 410 CIRLYSEDDFETRPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQ 469

Query: 607 SLTQHGAI-----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            L + GA+     D+++R+T +GR LS LPVD  L +M+V          V+ +AA LS+
Sbjct: 470 LLQELGALDPAQKDARKRLTPMGRKLSQLPVDPRLARMVVEADKNGCAREVMVIAAALSI 529

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P    A +    +      +    D L  LN ++     +K+R  S  ++ CK+  + 
Sbjct: 530 QDPRERPAEKQAQADQQHARFKDETSDFLAYLNLWRYVREQQKERGSSSFRRMCKQEYLN 589

Query: 720 EQRFYEVTKLRSQFKQV 736
             R  E   + SQ + V
Sbjct: 590 FLRIREWQDIYSQLRTV 606



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  GVC RLYSE+ +    E++  EI R ++ S++L +   GLGD+ KFPF++ P   
Sbjct: 403 GRTSDGVCIRLYSEDDFETRPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHR 462

Query: 868 NIESSVRSLTQHGAI-----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI   V+ L + GA+     D+++R+T +GR LS LPVD  L +M+V          +++
Sbjct: 463 NIRDGVQLLQELGALDPAQKDARKRLTPMGRKLSQLPVDPRLARMVVEADKNGCAREVMV 522

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 523 IAAALSIQ--DPRER 535



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 4/104 (3%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACI 94
           LPV+Q K +I   +   +VVI+AG+TG GK+TQIP+  ++ G      I  TQPRRIA  
Sbjct: 77  LPVSQKKDDIAAAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGMIGHTQPRRIAAR 136

Query: 95  SLSKRVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLL 137
           ++++RVA E  +     VG+++RF ++   + T +  +T+G+LL
Sbjct: 137 TVAERVAEELRTPLGEAVGWKVRFTDQVNPDATFVKLMTDGILL 180



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L +YD +++DE HER L+ DFLLG +  LL    ++K+++ SATI+ E F  
Sbjct: 181  AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR 240

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 241  HFGDAPIVEVSGRT 254


>gi|449267465|gb|EMC78408.1| ATP-dependent RNA helicase DHX8 [Columba livia]
          Length = 1206

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 655  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 714

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 715  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 763

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 764  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 822

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 823  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 882

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 883  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 942

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 943  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1002

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1003 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1058

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1059 RRAQDIR---KQMLG 1070



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T + I E + SLP+ + K+++I  V   +++I+ 
Sbjct: 516 MMPNDIPEWKK--HAFGGNKASYGKKTQLSIIEQRESLPIFRLKEQLIQAVHDNQILIVI 573

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 574 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 633

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 634 FEDCTSPETVIKYMTDGMLLRE 655



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 879 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 938

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 939 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 994



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 659  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 715


>gi|374623871|ref|ZP_09696367.1| ATP-dependent helicase HrpA [Ectothiorhodospira sp. PHS-1]
 gi|373942968|gb|EHQ53513.1| ATP-dependent helicase HrpA [Ectothiorhodospira sp. PHS-1]
          Length = 1289

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 148/432 (34%), Positives = 238/432 (55%), Gaps = 13/432 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+ +D  LS+YD L++DE HER L+ DFLLG +K LL    ++K+++ SAT++ E    
Sbjct: 178 AELRSDPLLSAYDTLIIDEAHERSLNIDFLLGYLKRLLPRRPDLKLLITSATLDPERIAR 237

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEK-LDPGPYIRILSIIDKKYPRTERGD 427
           +F   A + +VPGR YP+++ Y P+   D   +E+ L+      +L+ +D+   +   GD
Sbjct: 238 HFAD-APVYEVPGRTYPVEIRYRPVTGEDDADTERDLNEA----LLAAVDE-LAQAGPGD 291

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +L+F+ G  EI     A ++++ +     +LPL++ LS  EQ++VF  AP   R+ +++T
Sbjct: 292 ILVFLPGEREIREAAEALRKHHPRHTE--ILPLYARLSAAEQNQVF--APHTGRRVVLAT 347

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AET++T+ GIR+V+DSG V+   Y   +++  L    +S+ASA QR GR GR GPG+C
Sbjct: 348 NVAETALTVPGIRYVIDSGLVRIARYAWRSRIQRLSLEPVSQASANQRAGRCGRLGPGIC 407

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLY EE++ L   Y+ PEI R ++ S++L +  + LGD   FPF+E P A  I    + 
Sbjct: 408 IRLYGEEEFQLRPAYTDPEILRSNLASVILQMAHLNLGDPEDFPFVEPPDARLIRDGFKL 467

Query: 608 LTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTN 667
           L    A+D    +T+ GR L+ LPVD  LG ML+  +    +  V  + A L++Q P   
Sbjct: 468 LQTLRAVDDAHGITATGRQLARLPVDPTLGAMLLAAAREQALAEVTLIVAFLALQDPRER 527

Query: 668 RAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKK--DRVRSKKWCKRRGIEEQRFYE 725
            A +    + A         D L  L  +  W    +   + + + WC+   +   R  E
Sbjct: 528 PAEKRQAADEAHARFREPGSDFLGYLKLWAAWREQSRHLSKAKLRAWCREHFLSFIRMRE 587

Query: 726 VTKLRSQFKQVL 737
              L  Q +Q L
Sbjct: 588 WQDLHGQLRQSL 599



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 72/132 (54%), Gaps = 6/132 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R GPG+C RLY EE++ L   Y+ PEI R ++ S++L +  + LGD   FPF+E P A 
Sbjct: 400 GRLGPGICIRLYGEEEFQLRPAYTDPEILRSNLASVILQMAHLNLGDPEDFPFVEPPDAR 459

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQID--TMLLLDL 925
            I    + L    A+D    +T  GR L+ LPVD  LG ML+  +    +   T+++  L
Sbjct: 460 LIRDGFKLLQTLRAVDDAHGITATGRQLARLPVDPTLGAMLLAAAREQALAEVTLIVAFL 519

Query: 926 ALNFGAIDSKER 937
           AL     D +ER
Sbjct: 520 ALQ----DPRER 527



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIA 92
           + LPV+ +++EI   +   +VV+I G+TG GK+TQ+P+  +  G      I  TQPRRIA
Sbjct: 73  DDLPVSAHREEIARLIQAHQVVVICGETGSGKTTQLPKICLSLGRGTDGLIGHTQPRRIA 132

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             S++ R+A E  S     VG+++RF  H   +T +  +T+G+LL
Sbjct: 133 ARSVASRIAEELNSPLGEQVGFKVRFSDHVGPRTLVKLMTDGILL 177



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 42/62 (67%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++ +D  LS+YD L++DE HER L+ DFLLG +K LL    ++K+++ SAT++ E    
Sbjct: 178  AELRSDPLLSAYDTLIIDEAHERSLNIDFLLGYLKRLLPRRPDLKLLITSATLDPERIAR 237

Query: 1174 YF 1175
            +F
Sbjct: 238  HF 239


>gi|127801176|gb|AAH44586.2| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Homo sapiens]
          Length = 1220

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 669  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 728

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 729  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 777

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 778  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 836

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 837  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 896

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 897  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 956

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 957  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1016

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1017 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIKARSL 1072

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1073 RRAQDIR---KQMLG 1084



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 530 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 587

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 588 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 647

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 648 FEDCTSPETVIKYMTDGMLLRE 669



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 893  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 952

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 953  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1008



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 673  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 729


>gi|336368260|gb|EGN96603.1| hypothetical protein SERLA73DRAFT_111238 [Serpula lacrymans var.
            lacrymans S7.3]
          Length = 1171

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 234/434 (53%), Gaps = 23/434 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D   SSY V++LDE HER +  D L G++K  +    ++K+I+ SAT++ E F  Y
Sbjct: 613  ECVIDPLCSSYSVIMLDEAHERTIATDVLFGLLKKAVKRRPDLKLIVTSATLDAEKFSKY 672

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F     I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 673  FFGCP-IFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLSEPP----GDIL 721

Query: 430  IFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
            +F++G  EI +      E       K    ++LP++S L  E Q RVF   P G RK ++
Sbjct: 722  LFLTGQEEIDTACEILYERMKALGPKVPDLLILPIYSALPSEVQSRVFEPTPPGARKVVI 781

Query: 486  STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
            +TN+AETS+TI GI +V+D G  K+ +YD    M +L    IS+A A QR GRAGRTGPG
Sbjct: 782  ATNVAETSLTIPGIYYVIDPGFSKQNAYDPRLGMDSLVVMPISQAQARQRSGRAGRTGPG 841

Query: 546  VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
             CYRL++E  Y + +   S P+I+R ++   +L L  MG+ D+  F F++ PPA+ + ++
Sbjct: 842  KCYRLFTEAAYRNEMLPTSIPDIQRTNLAHTILMLKAMGINDLLSFDFMDPPPAQTMLTA 901

Query: 605  VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            + +L    A+D +  +T LGR ++D P++ PL KML+        + +LS+ A+LSVQS 
Sbjct: 902  LEALYALSALDDEGLLTRLGRKMADFPMEPPLAKMLIASVELGCSEEILSIVAMLSVQSV 961

Query: 665  FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
            F     +    ++ + +     GD LT+L  Y  W G       S  WC    I+ +   
Sbjct: 962  FYRPKEKQGQADSKKAKFHQPEGDHLTLLTVYNGWKGAN----FSNPWCYENFIQARSMR 1017

Query: 725  EVTKLRSQFKQVLG 738
                +R   KQ+LG
Sbjct: 1018 RAQDVR---KQLLG 1028



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 78/116 (67%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RI 83
           T + I++ + +LP+ + +  ++  + + +V+I+ GDTG GK+TQ+ QYL ++GF    RI
Sbjct: 498 TNLSIQDQRKNLPIYKLRDPLLQAIGEHQVLIVVGDTGSGKTTQMVQYLAESGFADRGRI 557

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A +S++KRVA E   +    VGY IRFE     +TKI ++T+G+L R+
Sbjct: 558 GCTQPRRVAAMSVAKRVAEEVGCRLGQEVGYTIRFEDCTSPETKIKYMTDGMLQRE 613



 Score = 83.2 bits (204), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 66/102 (64%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRL++E  Y + +   S P+I+R ++   +L L  MG+ D+  F F++ PPA+
Sbjct: 837 RTGPGKCYRLFTEAAYRNEMLPTSIPDIQRTNLAHTILMLKAMGINDLLSFDFMDPPPAQ 896

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            + +++ +L    A+D +  +T LGR ++D P++ PL KML+
Sbjct: 897 TMLTALEALYALSALDDEGLLTRLGRKMADFPMEPPLAKMLI 938



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPK---QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            +E G  +   D    E ++K+      Q +   D   SSY V++LDE HER +  D L G
Sbjct: 584  QEVGYTIRFEDCTSPETKIKYMTDGMLQRECVIDPLCSSYSVIMLDEAHERTIATDVLFG 643

Query: 1146 VIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            ++K  +    ++K+I+ SAT++ E F  YF
Sbjct: 644  LLKKAVKRRPDLKLIVTSATLDAEKFSKYF 673


>gi|444516657|gb|ELV11248.1| ATP-dependent RNA helicase DHX8 [Tupaia chinensis]
          Length = 1104

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 553 ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 612

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 613 FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 661

Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 662 VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 720

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 721 IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 780

Query: 545 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 781 GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 840

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
           ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 841 AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 900

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
            F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 901 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 956

Query: 724 YEVTKLRSQFKQVLG 738
                +R   KQ+LG
Sbjct: 957 RRAQDIR---KQMLG 968



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 414 MMPNDIPEWKK--HAFGGNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVI 471

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 472 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 531

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 532 FEDCTSPETVIKYMTDGMLLRE 553



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 777 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 836

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 837 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 892



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 557  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 613


>gi|338997822|ref|ZP_08636509.1| ATP-dependent helicase HrpA [Halomonas sp. TD01]
 gi|338765283|gb|EGP20228.1| ATP-dependent helicase HrpA [Halomonas sp. TD01]
          Length = 1337

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 167/487 (34%), Positives = 263/487 (54%), Gaps = 42/487 (8%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI++  F  
Sbjct: 196 AETQHDPLLLRYDTLIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIITSATIDVNRFAA 255

Query: 369 YFNRI---AKIIKVPGRLYPIQLEYHPIV-----ELDRTKSEKLDPGPYIRILSIIDKKY 420
           +F      A +++V GR +P+ + Y P+      E DRT  E +     +R +  I+++ 
Sbjct: 256 HFGSAKTPAPVVEVSGRTFPVDVHYRPLARSEEDEDDRTLQEGILHA--VREIETIEREK 313

Query: 421 -----PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQ--GWIVLPLHSTLSLEEQDRVF 473
                PR    DVL+F+ G  EI    R A +   ++   G  +LPL++ LS EEQ+RVF
Sbjct: 314 GWLHGPR----DVLVFLPGEREI----REAADTLRRADLTGTEILPLYARLSNEEQNRVF 365

Query: 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAE 533
             A    R+ +++TN+AETS+T+ GIR+V+D G V+   Y   AK+  L    IS+ASA 
Sbjct: 366 --ASHRGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRAKIQRLPIEPISQASAN 423

Query: 534 QRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFL 593
           QRKGR GR   GVC RLY EE +     ++ PEI+R ++ S++LS++ + LG +  FPF+
Sbjct: 424 QRKGRCGRVAEGVCIRLYDEEDFLSRPAFTDPEIQRTNLASVILSMLALKLGSIEAFPFV 483

Query: 594 EAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
           + P +  ++   R L + GA+D ++R++ LGR L+ LP+D  L +M++ G+    +  VL
Sbjct: 484 DPPDSRFVKDGFRLLFELGAVDDQQRLSPLGRKLAKLPIDPRLARMVLAGAERGSLRDVL 543

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDR-----VR 708
            + + L++Q P    A +    + A +       D + +LN    W G++  R      +
Sbjct: 544 IVVSALAIQDPRDRPADKRQAADQAHQRWHDPDSDFVALLNL---WHGIENAREALSGNQ 600

Query: 709 SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGP-----DASLSSRERALRHG 763
            ++WC+   I   R  E      Q +Q+L D  +  D+P P     D S    ++A R  
Sbjct: 601 LRRWCREHYINYLRMREWHDTFRQLRQLLRDMDI--DVPAPPLRDEDESEEQAKQARRKT 658

Query: 764 EIKLLQA 770
             KL QA
Sbjct: 659 SGKLHQA 665



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 74/120 (61%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLY EE +     ++ PEI+R ++ S++LS++ + LG +  FPF++ P + 
Sbjct: 430 GRVAEGVCIRLYDEEDFLSRPAFTDPEIQRTNLASVILSMLALKLGSIEAFPFVDPPDSR 489

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            ++   R L + GA+D ++R++ LGR L+ LP+D  L +M++ G+    +  +L++  AL
Sbjct: 490 FVKDGFRLLFELGAVDDQQRLSPLGRKLAKLPIDPRLARMVLAGAERGSLRDVLIVVSAL 549



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 63/103 (61%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LPV + +++I+  +   +VV++AG+TG GK+TQ+P+  ++ G  R   I  TQPRR+A  
Sbjct: 93  LPVVERREDILKAIRDHQVVVVAGETGSGKTTQLPKICLELGRGRKGMIGHTQPRRLAAR 152

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           S++ R+A E        VGYQ+RF       T +  +T+G+LL
Sbjct: 153 SVAGRLAEEMSVPLGEQVGYQVRFNDQSSPNTLVKLMTDGILL 195



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
            D  L  YD L++DE HER L+ DFLLG +K LL    ++K+I+ SATI++  F  +F 
Sbjct: 201  DPLLLRYDTLIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIITSATIDVNRFAAHFG 258


>gi|381152424|ref|ZP_09864293.1| ATP-dependent helicase HrpA [Methylomicrobium album BG8]
 gi|380884396|gb|EIC30273.1| ATP-dependent helicase HrpA [Methylomicrobium album BG8]
          Length = 1304

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 161/466 (34%), Positives = 253/466 (54%), Gaps = 20/466 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D +L+ YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 178 AETQNDPYLNQYDTIIIDEAHERSLNIDFLLGYMKWLLPKRPDLKLIITSATIDPERFSR 237

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELD------RTKSEKLDPGPYIRILSIIDKKYPR 422
           +F   A II+V GR YP+++ Y P+ E +      +T +++        IL  +D+   R
Sbjct: 238 HFFD-APIIEVSGRTYPVEIRYRPVEETEQDEEGKKTANDETSDNLQQAILEAVDE-LVR 295

Query: 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR- 481
             RGD+LIFMSG  EI     + ++++     + +LPL++ LS  EQ+RVF   P+G + 
Sbjct: 296 DVRGDILIFMSGEREIKETTESLKKHHPSK--YEILPLYAKLSTSEQERVF--KPKGGKI 351

Query: 482 KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
           + +++TN+AETS+T+ GIR V+D+G  +   Y   +K+  L    IS++SA QR GR GR
Sbjct: 352 RIVLATNVAETSLTVPGIRAVIDTGHARISRYSHRSKIQRLPIERISQSSANQRAGRCGR 411

Query: 542 TGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENI 601
              G+C RLYS E Y    E++ PEI R ++ +++L +  + LGD+  FPF+E P  + I
Sbjct: 412 VAEGICIRLYSAEDYQARPEFTEPEILRTNLSAVILQMTALNLGDIEDFPFIEPPEDKMI 471

Query: 602 ESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
                 L +  A+D + ++T +G+ L   P D  L +ML+     H +  V  + + LS+
Sbjct: 472 RDGKTVLQEVNALDKQGKLTEIGKQLVKFPTDPRLARMLIAAEKQHALHEVAIIVSALSI 531

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSK--KWCKRRGIE 719
           Q P    A +    E  +        D LT+LN + ++   KK    +K  K+C    + 
Sbjct: 532 QDPREKPADKLAQAEAKQARFRHEDSDFLTLLNLWNDFEEQKKHLSNNKLRKYCSDHFLS 591

Query: 720 EQRFYEVTKLRSQFKQVL-GDSGL-ITDIPGPDASLSSRERALRHG 763
             R  E   + +Q  QV+ GD  L I  +P   AS +   RAL  G
Sbjct: 592 YIRMREWVDIHAQIMQVIKGDLNLKINTVP---ASYAEIHRALLPG 634



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 65/121 (53%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYS E Y    E++ PEI R ++ +++L +  + LGD+  FPF+E P  +
Sbjct: 410 GRVAEGICIRLYSAEDYQARPEFTEPEILRTNLSAVILQMTALNLGDIEDFPFIEPPEDK 469

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I      L +  A+D + ++T +G+ L   P D  L +ML+     H +  + ++  AL
Sbjct: 470 MIRDGKTVLQEVNALDKQGKLTEIGKQLVKFPTDPRLARMLIAAEKQHALHEVAIIVSAL 529

Query: 928 N 928
           +
Sbjct: 530 S 530



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIACI 94
           LPV   K EI + +   +VVI+ G+TG GK+TQ+P+  +  G      I  TQPRRIA  
Sbjct: 75  LPVTGKKDEIAELIRNNQVVIVCGETGSGKTTQLPKICLSIGLGSGGFIGHTQPRRIAAR 134

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           +++ R+A E        VG+++RF       + +  +T+G+LL
Sbjct: 135 TVADRIAEELGEPLGKSVGFKVRFTDKTHADSLVKLMTDGILL 177



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D +L+ YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  +F
Sbjct: 183  DPYLNQYDTIIIDEAHERSLNIDFLLGYMKWLLPKRPDLKLIITSATIDPERFSRHF 239


>gi|119479157|ref|XP_001259607.1| RNA helicase-like splicing factor (HRH1), putative [Neosartorya
            fischeri NRRL 181]
 gi|119407761|gb|EAW17710.1| RNA helicase-like splicing factor (HRH1), putative [Neosartorya
            fischeri NRRL 181]
          Length = 1230

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 154/431 (35%), Positives = 234/431 (54%), Gaps = 24/431 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            EV  D  L  Y V++LDE HER +  D L G++K  +    ++++I+ SAT++ E F  Y
Sbjct: 670  EVLLDPDLKRYSVIMLDEAHERTIATDVLFGLLKKTIKRRPDLRLIVTSATLDAEKFSEY 729

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE-RGDV 428
            FN+   I  +PGR YP+++ Y    E D           Y+    I   +   TE  GD+
Sbjct: 730  FNKCP-IFSIPGRTYPVEIMYSKEPEPD-----------YLDAALITVMQIHLTEPAGDI 777

Query: 429  LIFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKC 483
            L+F++G  EI +      E   K+ G      I+LP++S L  E Q R+F  AP G RK 
Sbjct: 778  LLFLTGQEEIDTACEILYE-RMKALGKGVPELIILPVYSALPSEMQSRIFEPAPPGGRKV 836

Query: 484  IVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543
            +++TNIAETSITID I +V+D G VK+ +YD    M +L    IS+A A+QR GRAGRTG
Sbjct: 837  VIATNIAETSITIDNIYYVIDPGFVKQNAYDPKLGMDSLVVTPISQAQAKQRAGRAGRTG 896

Query: 544  PGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
            PG CYRLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP   + 
Sbjct: 897  PGKCYRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTML 956

Query: 603  SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
            +++  L    A+D +  +T LGR ++D P++  L K+L+        + +LS+ A+LS+Q
Sbjct: 957  TALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVDMGCSEEMLSIVAMLSIQ 1016

Query: 663  SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
            S F     +    +  + +    HGD LT+LN Y  W    K+   +  WC    I+ ++
Sbjct: 1017 SVFYRPKEKQQQADQKKAKFHDPHGDHLTLLNVYNGW----KNSKFNNAWCYENFIQARQ 1072

Query: 723  FYEVTKLRSQF 733
                  +R Q 
Sbjct: 1073 IRRAQDVRQQL 1083



 Score =  113 bits (282), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 86/135 (63%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EWK   R  +   Q     T M I++ + SLPV +++Q+++D V   +++I+ GDTG GK
Sbjct: 539 EWK---RVTMGKNQSFGKRTNMSIKQQRESLPVFKFRQQLLDAVRDNQLLIVVGDTGSGK 595

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQ+ QYL +AG+     I CTQPRR+A +S++KRVA E   +    VGY IRFE     
Sbjct: 596 TTQVTQYLAEAGYANNGMIGCTQPRRVAAMSVAKRVAEEVGCRLGAEVGYTIRFEDCTSP 655

Query: 125 KTKIVFITEGLLLRQ 139
           +TKI ++T+G+L R+
Sbjct: 656 ETKIKYMTDGMLQRE 670



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG CYRLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP 
Sbjct: 893 GRTGPGKCYRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPT 952

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
             + +++  L    A+D +  +T LGR ++D P++  L K+L+
Sbjct: 953 NTMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLI 995



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q +V  D  L  Y V++LDE HER +  D L G++K  +    ++++I+ SAT++ E F 
Sbjct: 668  QREVLLDPDLKRYSVIMLDEAHERTIATDVLFGLLKKTIKRRPDLRLIVTSATLDAEKFS 727

Query: 1173 TYFNR 1177
             YFN+
Sbjct: 728  EYFNK 732


>gi|387770369|ref|ZP_10126552.1| ATP-dependent helicase HrpA [Pasteurella bettyae CCUG 2042]
 gi|386904731|gb|EIJ69520.1| ATP-dependent helicase HrpA [Pasteurella bettyae CCUG 2042]
          Length = 1303

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 243/443 (54%), Gaps = 22/443 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D +L+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++  F  
Sbjct: 186 AEIQTDRYLNQYDTLIIDEAHERSLNNDFILGYLKLLLPRRPDLKVIITSATIDVARFSK 245

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A II+V GR YP+++ Y P++E +       D      IL+ +D+      RGD+
Sbjct: 246 HFNN-APIIEVSGRTYPVEVRYRPMIEEE-------DQDQLQGILNAVDELQAEG-RGDI 296

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIF++G  EI     A Q+   +     +LPL++ LS +EQ+++FH  P  L + +++TN
Sbjct: 297 LIFLNGEREIRDTAEALQKQELRHTE--ILPLYARLSAQEQNKIFH--PSSLNRIVLATN 352

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 353 VAETSLTVPGIKYVIDPGTARISCYSYRTKVQRLPIEPISQASANQRKGRCGRVSDGICI 412

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +I+  ++ L
Sbjct: 413 RLYSEEDFNNRPEFTDPEILRTNLASVILQMTSLGLDDIEAFPFVDAPDKRHIQDGIKLL 472

Query: 609 TQHGAIDSKER-------VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
            +  A + K+        +T  G+ L+ LPVD  L KML+    F  I  V+ + A LS+
Sbjct: 473 EELEAFEFKQTKFGERRFLTKEGKQLAQLPVDPRLAKMLLSAVSFGSIYEVMIIVAALSI 532

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGIE 719
           Q P      +    +   +       D L  +N +      +K+   +  ++ C++  + 
Sbjct: 533 QDPRERPQDKQQAADDKHRRFVDKKSDFLAFVNLWNYIQKQQKELTNNQFRRLCQKDYLN 592

Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
             R  E   +  Q +  + + GL
Sbjct: 593 YLRIREWQDIYHQIRLTVREMGL 615



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 71/105 (67%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIA 92
           ++LPV+Q K EI + +   +VV+IAG+TG GK+TQ+P+  ++ G  +   I  TQPRRIA
Sbjct: 81  DNLPVSQRKTEIQNLIQNNQVVVIAGETGSGKTTQLPKMCLELGLGQKGLIGHTQPRRIA 140

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             S++ R+A E  ++  +LVGY++RF     + ++I  +T+G+LL
Sbjct: 141 ARSVAARIAEELQTELGSLVGYKVRFNDQISDDSQIKLMTDGILL 185



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 9/136 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSEE ++   E++ PEI R ++ S++L +  +GL D+  FPF++AP   +
Sbjct: 405 RVSDGICIRLYSEEDFNNRPEFTDPEILRTNLASVILQMTSLGLDDIEAFPFVDAPDKRH 464

Query: 869 IESSVRSLTQHGAIDSKER-------VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
           I+  ++ L +  A + K+        +T  G+ L+ LPVD  L KML+    F  I  ++
Sbjct: 465 IQDGIKLLEELEAFEFKQTKFGERRFLTKEGKQLAQLPVDPRLAKMLLSAVSFGSIYEVM 524

Query: 922 LLDLALNFGAIDSKER 937
           ++  AL+    D +ER
Sbjct: 525 IIVAALSIQ--DPRER 538



 Score = 67.0 bits (162), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D +L+ YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI++  F  
Sbjct: 186  AEIQTDRYLNQYDTLIIDEAHERSLNNDFILGYLKLLLPRRPDLKVIITSATIDVARFSK 245

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 246  HFNNAPIIEVSGRT 259



 Score = 43.9 bits (102), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            ++ TD +L+ YD LI+DE HER L  DF+LG +
Sbjct: 186 AEIQTDRYLNQYDTLIIDEAHERSLNNDFILGYL 219


>gi|49250365|gb|AAH74605.1| DHX33 protein, partial [Xenopus (Silurana) tropicalis]
          Length = 699

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 152/443 (34%), Positives = 255/443 (57%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIE 364
           E   D  L  Y V++LDE HER +H D L GV+K       E     +KII+MSAT++++
Sbjct: 170 EAIGDPLLRKYSVVILDEAHERTIHTDVLFGVVKSAQKKRKEQEKQPLKIIIMSATMDVD 229

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI----IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y++   +    + ++ 
Sbjct: 230 LFSEYFNG-APVLYLEGRQHPIQIFY--------TKESQSD---YLQAALVTVFQVHQEV 277

Query: 421 PRTERGDVLIFMSGISEISSIVRAAQEYN----EKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P +   D+L+F++G  EI ++ +  ++ +    +     +V+PL+++L   +Q RVF  A
Sbjct: 278 PASH--DILVFLTGQEEIEAMTKTCRDISKHLPDDCPKMVVMPLYASLPHSQQLRVFQNA 335

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SKA A QR 
Sbjct: 336 PKGQRKVILSTNIAETSITIPGIKYVVDTGMVKAKKYNPESGLEVLAVQKVSKAQAWQRT 395

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY EE++    E + PEI+R ++ S++L L+ + + +V  F F+  P
Sbjct: 396 GRAGREDSGICYRLYKEEEFEKFEEMTVPEIQRCNLASVMLQLLVLRVPNVHTFDFMSKP 455

Query: 597 PAENIESSVRSLTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K     +T LG+ ++  P++    K ++    FH  + +L
Sbjct: 456 SPDSIQAAIDQLHLLGAVERKGDQIVLTPLGKKMAAFPLEPKFSKTILLSPKFHCTEEIL 515

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N A +  + + ARK+  S+ GD +T+LN Y+ +    K+  ++K WC
Sbjct: 516 TIVSLLSVDSVLHNPASKRDEVQAARKKFISSEGDHITLLNIYRAF----KNLGKNKDWC 571

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           +   I  +    V ++RSQ + +
Sbjct: 572 RENFINGRNMTMVLEVRSQLRDI 594



 Score =  106 bits (265), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 3/117 (2%)

Query: 29  MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IAC 85
           M + E + SLP+   + +II  + K   V+I G+TG GK+TQIPQYL +A   R   IA 
Sbjct: 57  MTVEEQRRSLPIYLARSQIIAQLRKLDSVVIIGETGSGKTTQIPQYLYEASIGRQSIIAV 116

Query: 86  TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
           TQPRR+A ISL+ RV+ E  ++ S LVGY +RFE    E+TKI F+T+G+LLR+  G
Sbjct: 117 TQPRRVAAISLATRVSEERRTELSKLVGYTVRFEDVTSEETKIQFLTDGMLLREAIG 173



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 78/147 (53%), Gaps = 9/147 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY EE++    E + PEI+R ++ S++L L+ + + +V  F F+  P  ++
Sbjct: 400 REDSGICYRLYKEEEFEKFEEMTVPEIQRCNLASVMLQLLVLRVPNVHTFDFMSKPSPDS 459

Query: 869 IESSVRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVFGSMFH------QIDT 919
           I++++  L   GA++ K     +T LG+ ++  P++    K ++    FH       I +
Sbjct: 460 IQAAIDQLHLLGAVERKGDQIVLTPLGKKMAAFPLEPKFSKTILLSPKFHCTEEILTIVS 519

Query: 920 MLLLDLALNFGAIDSKERVTSLGRFLS 946
           +L +D  L+  A    E   +  +F+S
Sbjct: 520 LLSVDSVLHNPASKRDEVQAARKKFIS 546



 Score = 60.1 bits (144), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 1094 RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 1152
            R E + + E + +   D   ++ A  D  L  Y V++LDE HER +H D L GV+K    
Sbjct: 148  RFEDVTSEETKIQFLTDGMLLREAIGDPLLRKYSVVILDEAHERTIHTDVLFGVVKSAQK 207

Query: 1153 STAE-----VKIILMSATINIELFHTYFN 1176
               E     +KII+MSAT++++LF  YFN
Sbjct: 208  KRKEQEKQPLKIIIMSATMDVDLFSEYFN 236


>gi|403419430|emb|CCM06130.1| predicted protein [Fibroporia radiculosa]
          Length = 2713

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 150/452 (33%), Positives = 259/452 (57%), Gaps = 37/452 (8%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL---HSTAE------------VKI 354
           E+  D FL+ Y V+++DE HER L  D L+  +K +L   ++TA+             K+
Sbjct: 194 EMLGDPFLTKYSVIIIDEAHERTLRTDLLIANLKNILRVRNATADSKGKATTARWTPFKV 253

Query: 355 ILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILS 414
           ++MSAT++ + F  +F+  AK++ V GR +P+ + +  + + D   +        +R + 
Sbjct: 254 VVMSATLDADKFSHFFDN-AKVVYVKGRQHPVTICHTAVSQPDYVDAA-------VRTVF 305

Query: 415 IIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK----SQGWIVLPLHSTLSLEEQD 470
            I   +   + GD+LIF+ G  +I S+ ++ + Y ++     +G  + P+++ L  ++Q 
Sbjct: 306 QI---HTDMDPGDILIFLPGQEDIESLEKSLKMYADRLPKGCEGIALYPMYAALPPKQQS 362

Query: 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSY---DVTAKMSTLQEFWI 527
           ++F  AP G RKCI++TNIAETSITI GI++V+D+GK KE  Y   +  A   TL    I
Sbjct: 363 KIFAPAPPGTRKCILATNIAETSITIPGIKYVIDTGKCKEKRYVARETGAGFDTLLTRDI 422

Query: 528 SKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDV 587
           +K+SA QR GRAGR G G+C+RLY+EE +  + + + PEIRR S+ S LL L C+G  D+
Sbjct: 423 TKSSAMQRAGRAGREGSGMCFRLYTEESFKTMPDSAEPEIRRCSLTSSLLQLKCLG-QDL 481

Query: 588 RKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 647
            +  F++ P  E I +++++L   GAIDS++R+T LGR ++  P++  L + L+    F 
Sbjct: 482 EQLDFMDKPDQEAIGAALKTLFLLGAIDSQKRLTPLGRDIATFPLEPDLARALIASKEFG 541

Query: 648 QIDTVLSLAAVLSVQSP-FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWL--GVKK 704
               ++ + +VLS  S  F + A        AR++     GD +T L+  + +L   V +
Sbjct: 542 CTLEIIDILSVLSASSKLFFDLADEREVASEARQKFRHPSGDHMTTLHVVRSYLEIAVSE 601

Query: 705 DRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQV 736
            +V  ++WC+++ + ++   E   +RSQ + V
Sbjct: 602 SKVNRREWCRKQYVNDRCLVEAMDIRSQLRDV 633



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 78/128 (60%), Gaps = 3/128 (2%)

Query: 15  TYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQY 74
           ++   K     + +  I E +NSLP+A  K  I++ +    V I+ G+TG GK+TQ+PQY
Sbjct: 67  SWTKVKPSTAGNVVTSILEQRNSLPIASGKDAIVNEIKSNNVTILIGETGSGKTTQVPQY 126

Query: 75  LVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFI 131
           L+++G      IA TQPR++A  SL+ RVA E       LVGY +RF +    +T+I ++
Sbjct: 127 LLESGISGQGIIAVTQPRKVAATSLAARVAAEQRVPVGGLVGYSVRFNEAHSPQTRIKYV 186

Query: 132 TEGLLLRQ 139
           T+G+L+R+
Sbjct: 187 TDGMLVRE 194



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 7/134 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R G G+C+RLY+EE +  + + + PEIRR S+ S LL L C+G  D+ +  F++ P  E 
Sbjct: 436 REGSGMCFRLYTEESFKTMPDSAEPEIRRCSLTSSLLQLKCLG-QDLEQLDFMDKPDQEA 494

Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV----FGSMFHQIDTMLLLD 924
           I +++++L   GAIDS++R+T LGR ++  P++  L + L+    FG     ID + +L 
Sbjct: 495 IGAALKTLFLLGAIDSQKRLTPLGRDIATFPLEPDLARALIASKEFGCTLEIIDILSVLS 554

Query: 925 LA--LNFGAIDSKE 936
            +  L F   D +E
Sbjct: 555 ASSKLFFDLADERE 568



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 19/114 (16%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL---HSTAE------------VKIILM 1162
             D FL+ Y V+++DE HER L  D L+  +K +L   ++TA+             K+++M
Sbjct: 197  GDPFLTKYSVIIIDEAHERTLRTDLLIANLKNILRVRNATADSKGKATTARWTPFKVVVM 256

Query: 1163 SATINIELFHTYFNRIAKDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFN 1216
            SAT++ + F  +F+      + G   R H  VTI    ++   Y   A+   F 
Sbjct: 257  SATLDADKFSHFFDNAKVVYVKG---RQHP-VTICHTAVSQPDYVDAAVRTVFQ 306


>gi|426347900|ref|XP_004041580.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 1 [Gorilla gorilla
            gorilla]
          Length = 1220

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 669  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 728

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 729  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 777

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 778  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 836

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 837  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 896

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 897  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 956

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 957  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1016

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1017 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1072

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1073 RRAQDIR---KQMLG 1084



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 530 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 587

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 588 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 647

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 648 FEDCTSPETVIKYMTDGMLLRE 669



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 893  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 952

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 953  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1008



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 673  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 729


>gi|372488044|ref|YP_005027609.1| ATP-dependent helicase HrpA [Dechlorosoma suillum PS]
 gi|359354597|gb|AEV25768.1| ATP-dependent helicase HrpA [Dechlorosoma suillum PS]
          Length = 1320

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 150/439 (34%), Positives = 238/439 (54%), Gaps = 13/439 (2%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D +L++YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 187 AETQTDPYLNAYDTIIIDEAHERSLNIDFLLGYLKQLLAKRKDLKVIITSATIDAERFAQ 246

Query: 369 YF---NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTER 425
           +F    + A +I+V GRLYP+++ Y P+  L+  + E+      +  +  + ++ P    
Sbjct: 247 HFAQHGKPAPVIEVSGRLYPVEVRYRPVTPLEEDQEERDLYDAIVDAVHELGREGP---- 302

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GDVL+F+ G  EI     A ++++       +LPL S LS  EQDRVF     G R+ ++
Sbjct: 303 GDVLVFLPGEREIREAAEALRKHHFPGPQPEILPLFSRLSAAEQDRVFKTG--GGRRVVL 360

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GIR+VVD+G  +   Y    K+  LQ   +S+A+A QR GR GR   G
Sbjct: 361 ATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEMLQVERVSQAAARQRAGRCGRVAAG 420

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           VC RLY E  ++   E++ PEI R S+  ++L +  + L DV  FPF+EAPP + I    
Sbjct: 421 VCIRLYDEADFNARGEFTDPEILRSSLAGVILRMKALKLTDVESFPFIEAPPPKAINDGY 480

Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
             L + G +D   R+T +GR L+ LP+D  + +M+V       +  VL +AA LSVQ P 
Sbjct: 481 SLLQELGGLDEDNRLTDVGRGLAKLPLDPRIARMIVAARDRGCLKEVLVIAAALSVQDPR 540

Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW---CKRRGIEEQR 722
                R    +   ++      + L+ L  +  W   +   +  +K    CK R +   R
Sbjct: 541 ERPQERLQAADEKHRQFADEKSEFLSWLKLWN-WFEEQARHLSGRKLAEACKERFLSYLR 599

Query: 723 FYEVTKLRSQFKQVLGDSG 741
             E  ++ +Q   ++ + G
Sbjct: 600 MREWREVYNQIHAMVTELG 618



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   GVC RLY E  ++   E++ PEI R S+  ++L +  + L DV  FPF+EAPP +
Sbjct: 415 GRVAAGVCIRLYDEADFNARGEFTDPEILRSSLAGVILRMKALKLTDVESFPFIEAPPPK 474

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I      L + G +D   R+T +GR L+ LP+D  + +M+V       +  +L++  AL
Sbjct: 475 AINDGYSLLQELGGLDEDNRLTDVGRGLAKLPLDPRIARMIVAARDRGCLKEVLVIAAAL 534

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 535 SVQ--DPRER 542



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 44/67 (65%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             +   D +L++YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 187  AETQTDPYLNAYDTIIIDEAHERSLNIDFLLGYLKQLLAKRKDLKVIITSATIDAERFAQ 246

Query: 1174 YFNRIAK 1180
            +F +  K
Sbjct: 247  HFAQHGK 253



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 3/108 (2%)

Query: 33  ETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPR 89
           E    LPV   ++EI   +   +VVI+ G+TG GK+TQ+P+  ++ G      I  TQPR
Sbjct: 79  EYAEDLPVNGRREEIKALIEHNQVVIVCGETGSGKTTQLPKICLELGRGAAGLIGHTQPR 138

Query: 90  RIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           R+A  S++ RVA E  +Q    VG +IRF+     ++ +  +T+G+LL
Sbjct: 139 RLAARSVAARVAQELQTQIGAGVGVKIRFQDRSGPQSYLKLMTDGILL 186



 Score = 41.6 bits (96), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
            +  TD +L++YD +I+DE HER L  DFLLG +
Sbjct: 187 AETQTDPYLNAYDTIIIDEAHERSLNIDFLLGYL 220


>gi|259908387|ref|YP_002648743.1| ATP-dependent RNA helicase HrpA [Erwinia pyrifoliae Ep1/96]
 gi|387871243|ref|YP_005802616.1| ATP-dependent helicase HrpA [Erwinia pyrifoliae DSM 12163]
 gi|224964009|emb|CAX55514.1| ATP-dependent RNA helicase HrpA [Erwinia pyrifoliae Ep1/96]
 gi|283478329|emb|CAY74245.1| ATP-dependent helicase HrpA [Erwinia pyrifoliae DSM 12163]
          Length = 1300

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 163/494 (32%), Positives = 262/494 (53%), Gaps = 35/494 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DF+LG +  LL    ++K+I+ SATI+ + F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLCELLPKRPDLKVIITSATIDPQRFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A +I+V GR YP+++ Y P+VE    +++  D      I   +D+   R  RGD+
Sbjct: 240 HFHN-APVIEVSGRTYPVEVRYRPVVE----EADDSDRDQLQAIFDAVDE-LGRESRGDI 293

Query: 429 LIFMSGISEI----SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           LIFMSG  EI     ++++    + E      VLPL++ LS  EQ+RVF       R+ +
Sbjct: 294 LIFMSGEREIRDTADALIKRDLPHTE------VLPLYARLSNAEQNRVFQ--SHAGRRIV 345

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   
Sbjct: 346 LATNVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEAISQASANQRKGRCGRVSE 405

Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
           G+C RLY+E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  
Sbjct: 406 GICIRLYAEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDISAFPFVEAPDRRNIQDG 465

Query: 605 VRSLTQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           VR L + GAI    +   R+T  GR L+ LPVD  L KM++    +  +  V+ + A LS
Sbjct: 466 VRLLEELGAITLADNQHYRLTPSGRALAQLPVDPRLAKMVLEAQKYGCVREVMIITAALS 525

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P    A +    +   +       D +  +N +  WL  ++  + S   ++ CK   
Sbjct: 526 IQDPRERPADKKQASDEKHQRFADKESDFIAFVNLWN-WLQEQQKALSSSQFRRQCKTDY 584

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
           +   R  E   + +Q +QV+ + GL          ++S   ALR     LL  +     +
Sbjct: 585 LNYLRVREWQDIYTQLRQVVRELGL---------PVNSEPAALREIHTALLTGLLSHIGQ 635

Query: 778 EAPKRRKMLKADNA 791
           +   +++   A NA
Sbjct: 636 KESDKQEFTGARNA 649



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 6/133 (4%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLY+E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYAEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDISAFPFVEAPDRRN 461

Query: 869 IESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLD 924
           I+  VR L + GAI    +   R+T  GR L+ LPVD  L KM++    +  +  ++++ 
Sbjct: 462 IQDGVRLLEELGAITLADNQHYRLTPSGRALAQLPVDPRLAKMVLEAQKYGCVREVMIIT 521

Query: 925 LALNFGAIDSKER 937
            AL+    D +ER
Sbjct: 522 AALSIQ--DPRER 532



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 4/110 (3%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQ 87
           IR  +N LPV+Q KQEI D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQ
Sbjct: 71  IRYPEN-LPVSQKKQEIADAIRASQVVIVAGETGSGKTTQLPKICLELGRGIRGLIGHTQ 129

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           PRR+A  ++++R+A E        VGY++RF     + T++  +T+G+LL
Sbjct: 130 PRRLAARTVAERIASELELSLGGCVGYKVRFNDKVGDTTQVKLMTDGILL 179



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 44/74 (59%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DF+LG +  LL    ++K+I+ SATI+ + F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLCELLPKRPDLKVIITSATIDPQRFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 240  HFHNAPVIEVSGRT 253


>gi|348522528|ref|XP_003448776.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX8-like
            [Oreochromis niloticus]
          Length = 1213

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D+ L  Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 662  ECLIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQY 721

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 722  FYE-APIFTIPGRTYPVEVLYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 770

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 771  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 829

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 830  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 889

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 890  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 949

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 950  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1009

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1010 VFYRPKDKQALADQKKAKFHQPEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1065

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1066 RRAQDIR---KQMLG 1077



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T + I E + SLP+ + K++++  V   +++I+ 
Sbjct: 523 MMPNDIPEWKK--HAFGGNKASYGKKTQLSILEQRESLPIYKLKEQLVQAVHDNQILIVI 580

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 581 GETGSGKTTQITQYLAEAGYTARGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIR 640

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 641 FEDCTSPETVIKYMTDGMLLRE 662



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 886  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 945

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 946  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1001



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D+ L  Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 666  DSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYF 722


>gi|420258493|ref|ZP_14761226.1| ATP-dependent RNA helicase HrpA [Yersinia enterocolitica subsp.
           enterocolitica WA-314]
 gi|404514043|gb|EKA27845.1| ATP-dependent RNA helicase HrpA [Yersinia enterocolitica subsp.
           enterocolitica WA-314]
          Length = 1280

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 155/444 (34%), Positives = 248/444 (55%), Gaps = 24/444 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F +
Sbjct: 161 AEIQQDRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSS 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIV+  D  + ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVDDADDVERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF--HYAPEGLRKCIV 485
           +LIFMSG  EI     A  + N       VLPL++ LS  EQ+RVF  H+     R+ ++
Sbjct: 274 ILIFMSGEREIRDTADALMKQNLPHTE--VLPLYARLSNSEQNRVFQSHHG----RRIVL 327

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G
Sbjct: 328 ATNVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSDG 387

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 388 ICIRLYSEQDFLSRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGV 447

Query: 606 RSLTQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
           R L + GAI    +  +++T LGR L+ LPVD  L +M++       +  ++ + + LS+
Sbjct: 448 RLLEELGAIQTASNGHQQLTPLGRQLAQLPVDPRLARMVLEAQKSGSVRELMIITSALSI 507

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGI 718
           Q P      +    +   +       D L  +N + ++L  ++  + S   +K C+   +
Sbjct: 508 QDPRERPMDKQQASDEKHRRFADKDSDFLAFVNLW-DYLKEQQKELSSAQFRKLCRSDFL 566

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL 742
              R  E   + +Q +QV+ + G+
Sbjct: 567 NYLRVREWQDIYTQLRQVVKELGI 590



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 79/134 (58%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSDGICIRLYSEQDFLSRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI+  VR L + GAI    +  +++T LGR L+ LPVD  L +M++       +  ++++
Sbjct: 442 NIQDGVRLLEELGAIQTASNGHQQLTPLGRQLAQLPVDPRLARMVLEAQKSGSVRELMII 501

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 502 TSALSIQ--DPRER 513



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
           +LPV+Q KQ+I + +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQDIYNAIRDNQVVIVAGETGSGKTTQLPKICLELGRGVTGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  +     VGY++RF     E T +  +T+G+LL
Sbjct: 117 RTVANRIADELDTSLGGCVGYKVRFNDQVGENTLVKLMTDGILL 160



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F +
Sbjct: 161  AEIQQDRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSS 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|154286240|ref|XP_001543915.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus NAm1]
 gi|150407556|gb|EDN03097.1| ATP-dependent RNA helicase DHX8 [Ajellomyces capsulatus NAm1]
          Length = 1226

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 238/434 (54%), Gaps = 22/434 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E+  D  L  Y V++LDE HER +  D L G++K  +    ++K+I+ SAT++ + F  Y
Sbjct: 666  EILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTIQRRPDLKVIVTSATLDADKFSEY 725

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            FN +  I  +PGR YP+++ Y    E     S+ LD    + ++ I    +     GD+L
Sbjct: 726  FN-MCPIFSIPGRTYPVEIMYSREPE-----SDYLDAA-LVTVMQI----HLTEPAGDIL 774

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   K+ G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 775  LFLTGQEEIDTACEILYE-RMKALGPSVPELIILPVYSALPSEMQSRIFEPAPPGSRKVV 833

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETSITID I +VVD G VK+ +YD    M +L    IS+A A+QR GRAGRTGP
Sbjct: 834  IATNIAETSITIDQIYYVVDPGFVKQNAYDPKLGMDSLVVTPISQAQAKQRSGRAGRTGP 893

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP   + +
Sbjct: 894  GKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLT 953

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L    A+D +  +T LGR ++D P++  L K+L+        D +L++ A+LSV S
Sbjct: 954  ALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVEMGCSDEMLTIVAMLSVHS 1013

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +    HGD LT+LN Y  W    K+   S  WC    I+ ++ 
Sbjct: 1014 IFYRPKEKQQQADQKKAKFHDPHGDHLTLLNVYNGW----KNSRFSSPWCFENFIQARQM 1069

Query: 724  YEVTKLRSQFKQVL 737
              V  +R Q   ++
Sbjct: 1070 RRVQDVREQLVTIM 1083



 Score =  106 bits (265), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 87/135 (64%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EWK + ++     Q     T M +++ + SLPV ++++++++ V + +++I+ GDTG GK
Sbjct: 535 EWKRVTQSK---DQSYGKRTNMTMKQQRESLPVFKFRKQLLEAVTENQLLIVVGDTGSGK 591

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQ+ QYL + GF     I CTQPRR+A +S++KRV+ E   +    VGY IRFE     
Sbjct: 592 TTQLTQYLAEGGFANNGIIGCTQPRRVAAVSVAKRVSEEVGCRLGAEVGYTIRFEDCTSP 651

Query: 125 KTKIVFITEGLLLRQ 139
           +TKI ++T+G+L R+
Sbjct: 652 ETKIKYMTDGILQRE 666



 Score = 77.0 bits (188), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 1/126 (0%)

Query: 808  SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
             RTGPG C+RLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP 
Sbjct: 889  GRTGPGKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPT 948

Query: 867  ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
              + +++  L    A+D +  +T LGR ++D P++  L K+L+        D ML +   
Sbjct: 949  NTMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVEMGCSDEMLTIVAM 1008

Query: 927  LNFGAI 932
            L+  +I
Sbjct: 1009 LSVHSI 1014



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 39/64 (60%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q ++  D  L  Y V++LDE HER +  D L G++K  +    ++K+I+ SAT++ + F 
Sbjct: 664  QREILLDPDLKKYSVIMLDEAHERTISTDVLFGLLKKTIQRRPDLKVIVTSATLDADKFS 723

Query: 1173 TYFN 1176
             YFN
Sbjct: 724  EYFN 727


>gi|121713496|ref|XP_001274359.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
            clavatus NRRL 1]
 gi|119402512|gb|EAW12933.1| RNA helicase-like splicing factor (HRH1), putative [Aspergillus
            clavatus NRRL 1]
          Length = 1231

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 154/435 (35%), Positives = 236/435 (54%), Gaps = 24/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            EV  D  L  Y V++LDE HER +  D L G++K  +    ++++I+ SAT++ E F  Y
Sbjct: 671  EVLLDPDLKRYSVIMLDEAHERTIATDVLFGLLKKTIKRRPDLRLIVTSATLDAEKFSEY 730

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE-RGDV 428
            FN+   I  +PGR YP+++ Y    E D           Y+    I   +   TE  GD+
Sbjct: 731  FNKCP-IFSIPGRTYPVEVMYSKEPEPD-----------YLDAALITVMQIHLTEPAGDI 778

Query: 429  LIFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKC 483
            L+F++G  EI +      E   K+ G      +VLP++S L  E Q R+F  AP G RK 
Sbjct: 779  LLFLTGQEEIDTACEILYE-RMKALGSTVPELVVLPVYSALPSEMQSRIFEPAPPGGRKV 837

Query: 484  IVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543
            +++TNIAETSITID I +V+D G VK+ +YD    M +L    IS+A A+QR GRAGRTG
Sbjct: 838  VIATNIAETSITIDNIYYVIDPGFVKQNAYDPKLGMDSLVVTPISQAQAKQRAGRAGRTG 897

Query: 544  PGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
            PG CYRLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP   + 
Sbjct: 898  PGKCYRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTML 957

Query: 603  SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
            +++  L    A+D +  +T LGR ++D P++  L K+L+        + +LS+ A+LS+Q
Sbjct: 958  TALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVDMGCSEEMLSIVAMLSIQ 1017

Query: 663  SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
            S F     +    +  + +    HGD LT+LN Y  W    K+   +  WC    I+ ++
Sbjct: 1018 SVFYRPKEKQQQADQKKAKFHDPHGDHLTLLNVYNGW----KNSKFNNAWCFENFIQARQ 1073

Query: 723  FYEVTKLRSQFKQVL 737
                  +R Q   ++
Sbjct: 1074 IRRAQDVRQQLMGIM 1088



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 86/135 (63%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EWK   R  +   Q     T M I++ + SLPV +++++++D V   +++I+ GDTG GK
Sbjct: 540 EWK---RVTMGKNQSFGKRTNMSIKQQRESLPVYKFREQLLDAVRDNQLLIVVGDTGSGK 596

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQ+ QYL +AG+     I CTQPRR+A +S++KRVA E   +    VGY IRFE     
Sbjct: 597 TTQVTQYLAEAGYANNGIIGCTQPRRVAAMSVAKRVAEEVGCRLGAEVGYTIRFEDCTSP 656

Query: 125 KTKIVFITEGLLLRQ 139
           +TKI ++T+G+L R+
Sbjct: 657 ETKIKYMTDGMLQRE 671



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG CYRLY+E  Y S +   + PEI+R ++   +L L  MG+ D+  F F++ PP 
Sbjct: 894 GRTGPGKCYRLYTEAAYQSEMLPTTIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPT 953

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
             + +++  L    A+D +  +T LGR ++D P++  L K+L+
Sbjct: 954 NTMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLI 996



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q +V  D  L  Y V++LDE HER +  D L G++K  +    ++++I+ SAT++ E F 
Sbjct: 669  QREVLLDPDLKRYSVIMLDEAHERTIATDVLFGLLKKTIKRRPDLRLIVTSATLDAEKFS 728

Query: 1173 TYFNR 1177
             YFN+
Sbjct: 729  EYFNK 733


>gi|157104239|ref|XP_001648316.1| ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869245|gb|EAT33470.1| AAEL014256-PA [Aedes aegypti]
          Length = 690

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 253/453 (55%), Gaps = 28/453 (6%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCL-----LHSTAEVKIILMSATINIE 364
           E  +D  L +Y+V++LDE HER +  D L G++K       L     +KII+MSAT+N+ 
Sbjct: 143 EALSDQLLKNYNVVILDEAHERTIATDVLFGIVKKAQSTRRLKMLEPLKIIIMSATMNVN 202

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424
            F  YF     +  + G+ + +++ Y  +  ++  ++          I +I        E
Sbjct: 203 HFSKYFGNCPTLY-LKGKNHIVRV-YQSMENMNYLEAC---------ITTIFQIHEKEQE 251

Query: 425 RGDVLIFMSGISEI---SSIVR--AAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG 479
            GD+L+F++G  EI   +++VR  A Q+ NE S    V P+++ +S + Q   F      
Sbjct: 252 SGDILVFLTGQEEIEATTTLVRRLAKQQVNENSLRMRVYPMYAAMSQQAQMDAFTPTAPN 311

Query: 480 LRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRA 539
            RK I++TNIAETS+TI GI++V+D GK K+ +YD    + TL+  WISKA A QR GRA
Sbjct: 312 ARKVILATNIAETSLTISGIKYVIDCGKAKQRAYDPLTGIDTLKVSWISKAQAWQRTGRA 371

Query: 540 GRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 599
           GR   G CYR YS+  +  + E+STPEI R SI +  L L+ +G+ D R+F FL+ PP E
Sbjct: 372 GRLEDGFCYRTYSKSDFQAMKEHSTPEILRCSISASTLQLLALGI-DCREFDFLDKPPPE 430

Query: 600 NIESSVRSLTQHGAIDSKE--RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAA 657
            IES++  L   GAI++ +   +T+LGR ++ LP+D    K+++     + +D +L++ A
Sbjct: 431 AIESALLELKNLGAINTVKAPALTALGRRMAKLPLDPKYAKIVLSAPDHNCLDEILTIVA 490

Query: 658 VLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRG 717
           +LS ++ F N + R      A  +  +  GD +T+LN +KE+    + + +S+KWC    
Sbjct: 491 MLSGENVFVNTSQRREQQLAAHSKFHAKCGDHITLLNVFKEF----RTKDKSRKWCVDNF 546

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPD 750
           + ++       +R+Q  ++    G+ ++  G D
Sbjct: 547 LLDRHLSHAASVRAQLFEICAKMGIRSNSCGND 579



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 76/112 (67%), Gaps = 3/112 (2%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQ 87
           I + + SLP+   ++ I+D V + + VI+ G+TG GKSTQ+PQYL +AG    ++IA TQ
Sbjct: 32  INQHRQSLPIYNIRKTIVDKVRECQTVILIGETGSGKSTQLPQYLHEAGIHGGRKIAITQ 91

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           PRR+A I+++KRVA E      ++VGY +RFE      TKI F+T+G LLR+
Sbjct: 92  PRRVAAITVAKRVATEQGGTVGDVVGYSVRFEDCTSAATKIKFMTDGTLLRE 143



 Score = 80.1 bits (196), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 69/113 (61%), Gaps = 3/113 (2%)

Query: 813 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 872
           G CYR YS+  +  + E+STPEI R SI +  L L+ +G+ D R+F FL+ PP E IES+
Sbjct: 377 GFCYRTYSKSDFQAMKEHSTPEILRCSISASTLQLLALGI-DCREFDFLDKPPPEAIESA 435

Query: 873 VRSLTQHGAIDSKE--RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           +  L   GAI++ +   +T LGR ++ LP+D    K+++     + +D +L +
Sbjct: 436 LLELKNLGAINTVKAPALTALGRRMAKLPLDPKYAKIVLSAPDHNCLDEILTI 488



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCL-----LHSTAEVKIILMSATINIELFH 1172
            +D  L +Y+V++LDE HER +  D L G++K       L     +KII+MSAT+N+  F 
Sbjct: 146  SDQLLKNYNVVILDEAHERTIATDVLFGIVKKAQSTRRLKMLEPLKIIIMSATMNVNHFS 205

Query: 1173 TYFNRIAKDLLSG 1185
             YF       L G
Sbjct: 206  KYFGNCPTLYLKG 218


>gi|126438139|ref|YP_001073830.1| ATP-dependent helicase HrpA [Mycobacterium sp. JLS]
 gi|126237939|gb|ABO01340.1| ATP-dependent helicase HrpA [Mycobacterium sp. JLS]
          Length = 1307

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 169/480 (35%), Positives = 251/480 (52%), Gaps = 47/480 (9%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L+LDE HER L+ DFLLG ++ LL    ++K+I+ SATI  E F  
Sbjct: 163 AEIQRDRRLLRYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPERFAE 222

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIV----------------ELDRT---------KSEK 403
           +F   A I++V GR YP+++ Y P+                 E+ RT          SE 
Sbjct: 223 HFGH-APIVEVSGRTYPVEIRYRPLEVPVVDDQSDDPDDPDHEVVRTPNAGLRASGSSEM 281

Query: 404 LDPGPYIRILSIID--KKYPRTERGDVLIFMSGISEI---SSIVRAAQEYNEKSQGWIVL 458
            DP       +I+D  ++      GDVL+F+SG  EI   + ++R      E      VL
Sbjct: 282 RDP-----TDAIVDAVRELEAEPPGDVLVFLSGEREIRDTAEVLRGELRNTE------VL 330

Query: 459 PLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAK 518
           PL++ L   EQ +VF  AP   R+ ++STN+AETS+T+ GIR+VVD G  +   Y    K
Sbjct: 331 PLYARLPTAEQQKVF--APHTGRRVVLSTNVAETSLTVPGIRYVVDPGTARISRYSRRTK 388

Query: 519 MSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLS 578
           +  L    IS+ASA QR GR+GRT PGVC RLYSEE +     Y+ PEI R ++ +++L 
Sbjct: 389 VQRLPIEPISQASAAQRAGRSGRTAPGVCIRLYSEEDFESRPRYTDPEILRTNLAAVILQ 448

Query: 579 LVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGK 638
           +  +GLGDV +FPFL++P   +I   V  L + GA D +  +T +GR L+ LP+D  +G+
Sbjct: 449 MAALGLGDVEEFPFLDSPEKRSIRDGVTLLQELGAFDREGELTDIGRRLARLPLDPRIGR 508

Query: 639 MLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKE 698
           M++       +  VL LAA LS+  P    A R+             H D ++ LN ++ 
Sbjct: 509 MILQSDTEGCVREVLVLAAALSIPDPRERPADREDAARQKHARFADEHSDFISYLNLWRY 568

Query: 699 WLGVKKDRVRS--KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLI-TDIPGPDASLSS 755
               +K+R  S  ++ C+   +   R  E   L  Q + +  D G+  +D P   AS+ +
Sbjct: 569 LGEQRKERSGSSFRRMCREEFLHYLRIREWQDLTGQLRSIARDLGIRESDEPASPASVHA 628



 Score = 97.1 bits (240), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 78/130 (60%), Gaps = 2/130 (1%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT PGVC RLYSEE +     Y+ PEI R ++ +++L +  +GLGDV +FPFL++P   
Sbjct: 410 GRTAPGVCIRLYSEEDFESRPRYTDPEILRTNLAAVILQMAALGLGDVEEFPFLDSPEKR 469

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           +I   V  L + GA D +  +T +GR L+ LP+D  +G+M++       +  +L+L  AL
Sbjct: 470 SIRDGVTLLQELGAFDREGELTDIGRRLARLPLDPRIGRMILQSDTEGCVREVLVLAAAL 529

Query: 928 NFGAIDSKER 937
           +    D +ER
Sbjct: 530 SIP--DPRER 537



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACI 94
           LPV+  + EI   +   +VV++AG+TG GK+TQ+P+  ++ G      I  TQPRR+A  
Sbjct: 60  LPVSDRRDEIARAIAGNQVVVVAGETGSGKTTQLPKICLELGRGIRGTIGHTQPRRLAAR 119

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           ++++R+A E  +   + VGY +RF     ++T +  +T+G+LL
Sbjct: 120 TVAQRIADELDTPIGDAVGYTVRFTDQASDRTLVKLMTDGILL 162



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 43/74 (58%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L+LDE HER L+ DFLLG ++ LL    ++K+I+ SATI  E F  
Sbjct: 163  AEIQRDRRLLRYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPERFAE 222

Query: 1174 YFNRIAKDLLSGST 1187
            +F       +SG T
Sbjct: 223  HFGHAPIVEVSGRT 236


>gi|387889424|ref|YP_006319722.1| ATP-dependent helicase [Escherichia blattae DSM 4481]
 gi|414594976|ref|ZP_11444608.1| ATP-dependent RNA helicase HrpA [Escherichia blattae NBRC 105725]
 gi|386924257|gb|AFJ47211.1| ATP-dependent helicase [Escherichia blattae DSM 4481]
 gi|403194083|dbj|GAB82260.1| ATP-dependent RNA helicase HrpA [Escherichia blattae NBRC 105725]
          Length = 1299

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 152/437 (34%), Positives = 241/437 (55%), Gaps = 19/437 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K +L    ++K+I+ SATI+ + F  
Sbjct: 179 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKEVLPRRPDLKVIITSATIDPQRFSR 238

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A +I+V GR YP+++ Y P+V+     +E  D      I   +D+       GD+
Sbjct: 239 HFDN-APVIEVSGRTYPVEVRYRPVVD----NAEDTDRDQLQAIFDAVDE-LGHEAPGDI 292

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFMSG  EI        + N +     VLPL++ LS  EQ+RVF   P   R+ +++TN
Sbjct: 293 LIFMSGEREIRDTADGLNKLNLRHTE--VLPLYARLSNSEQNRVFQ--PHTGRRIVLATN 348

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 349 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSDGICI 408

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR L
Sbjct: 409 RLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLL 468

Query: 609 TQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAI S E     ++T+ GR L+ LPVD  L +M++       +  V+ + A LS+Q 
Sbjct: 469 EELGAIISNEQQGSYKLTASGRQLARLPVDPRLARMVLEAQKHGCVREVMIITAALSIQD 528

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIEE 720
           P      +    +   +  +    D L  +N +  +LG ++  + S   ++ C+   +  
Sbjct: 529 PRERPQEKQQAADEKHRRFQDKDSDFLAFVNLWN-YLGEQQKALSSNGFRRLCRTEYLNY 587

Query: 721 QRFYEVTKLRSQFKQVL 737
            R  E   + +Q +QV+
Sbjct: 588 LRVREWQDIYTQIRQVV 604



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 400 GRVSDGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 459

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI S E     ++T  GR L+ LPVD  L +M++       +  +++
Sbjct: 460 NIQDGVRLLEELGAIISNEQQGSYKLTASGRQLARLPVDPRLARMVLEAQKHGCVREVMI 519

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 520 ITAALSIQ--DPRER 532



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
           ++LPV+Q KQ I++ +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 74  DNLPVSQKKQAILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGWIGHTQPRRLA 133

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    VGY++RF  H  E T +  +T+G+LL
Sbjct: 134 ARTVANRIAQELETEPGGCVGYKVRFNDHVGENTLVKLMTDGILL 178



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K +L    ++K+I+ SATI+ + F  
Sbjct: 179  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKEVLPRRPDLKVIITSATIDPQRFSR 238

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 239  HFDNAPVIEVSGRT 252


>gi|301605404|ref|XP_002932324.1| PREDICTED: putative ATP-dependent RNA helicase DHX33 [Xenopus
           (Silurana) tropicalis]
          Length = 678

 Score =  253 bits (645), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 152/443 (34%), Positives = 255/443 (57%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIE 364
           E   D  L  Y V++LDE HER +H D L GV+K       E     +KII+MSAT++++
Sbjct: 149 EAIGDPLLRKYSVVILDEAHERTIHTDVLFGVVKSAQKKRKEQEKQPLKIIIMSATMDVD 208

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI----IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y++   +    + ++ 
Sbjct: 209 LFSEYFNG-APVLYLEGRQHPIQIFY--------TKESQSD---YLQAALVTVFQVHQEV 256

Query: 421 PRTERGDVLIFMSGISEISSIVRAAQEYN----EKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P +   D+L+F++G  EI ++ +  ++ +    +     +V+PL+++L   +Q RVF  A
Sbjct: 257 PASH--DILVFLTGQEEIEAMTKTCRDISKHLPDDCPKMVVMPLYASLPHSQQLRVFQNA 314

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SKA A QR 
Sbjct: 315 PKGQRKVILSTNIAETSITIPGIKYVVDTGMVKAKKYNPESGLEVLAVQKVSKAQAWQRT 374

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY EE++    E + PEI+R ++ S++L L+ + + +V  F F+  P
Sbjct: 375 GRAGREDSGICYRLYKEEEFEKFEEMTVPEIQRCNLASVMLQLLVLRVPNVHTFDFMSKP 434

Query: 597 PAENIESSVRSLTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K     +T LG+ ++  P++    K ++    FH  + +L
Sbjct: 435 SPDSIQAAIDQLHLLGAVERKGDQIVLTPLGKKMAAFPLEPKFSKTILLSPKFHCTEEIL 494

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N A +  + + ARK+  S+ GD +T+LN Y+ +    K+  ++K WC
Sbjct: 495 TIVSLLSVDSVLHNPASKRDEVQAARKKFISSEGDHITLLNIYRAF----KNLGKNKDWC 550

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           +   I  +    V ++RSQ + +
Sbjct: 551 RENFINGRNMTMVLEVRSQLRDI 573



 Score =  106 bits (265), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 3/117 (2%)

Query: 29  MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IAC 85
           M + E + SLP+   + +II  + K   V+I G+TG GK+TQIPQYL +A   R   IA 
Sbjct: 36  MTVEEQRRSLPIYLARSQIIAQLRKLDSVVIIGETGSGKTTQIPQYLYEASIGRQSIIAV 95

Query: 86  TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
           TQPRR+A ISL+ RV+ E  ++ S LVGY +RFE    E+TKI F+T+G+LLR+  G
Sbjct: 96  TQPRRVAAISLATRVSEERRTELSKLVGYTVRFEDVTSEETKIKFLTDGMLLREAIG 152



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 78/147 (53%), Gaps = 9/147 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY EE++    E + PEI+R ++ S++L L+ + + +V  F F+  P  ++
Sbjct: 379 REDSGICYRLYKEEEFEKFEEMTVPEIQRCNLASVMLQLLVLRVPNVHTFDFMSKPSPDS 438

Query: 869 IESSVRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVFGSMFH------QIDT 919
           I++++  L   GA++ K     +T LG+ ++  P++    K ++    FH       I +
Sbjct: 439 IQAAIDQLHLLGAVERKGDQIVLTPLGKKMAAFPLEPKFSKTILLSPKFHCTEEILTIVS 498

Query: 920 MLLLDLALNFGAIDSKERVTSLGRFLS 946
           +L +D  L+  A    E   +  +F+S
Sbjct: 499 LLSVDSVLHNPASKRDEVQAARKKFIS 525



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 1094 RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 1152
            R E + + E + +   D   ++ A  D  L  Y V++LDE HER +H D L GV+K    
Sbjct: 127  RFEDVTSEETKIKFLTDGMLLREAIGDPLLRKYSVVILDEAHERTIHTDVLFGVVKSAQK 186

Query: 1153 STAE-----VKIILMSATINIELFHTYFN 1176
               E     +KII+MSAT++++LF  YFN
Sbjct: 187  KRKEQEKQPLKIIIMSATMDVDLFSEYFN 215


>gi|170285037|gb|AAI61345.1| DHX33 protein [Xenopus (Silurana) tropicalis]
          Length = 723

 Score =  253 bits (645), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 152/443 (34%), Positives = 255/443 (57%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIE 364
           E   D  L  Y V++LDE HER +H D L GV+K       E     +KII+MSAT++++
Sbjct: 176 EAIGDPLLRKYSVVILDEAHERTIHTDVLFGVVKSAQKKRKEQEKQPLKIIIMSATMDVD 235

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI----IDKKY 420
           LF  YFN  A ++ + GR +PIQ+ Y        TK  + D   Y++   +    + ++ 
Sbjct: 236 LFSEYFNG-APVLYLEGRQHPIQIFY--------TKESQSD---YLQAALVTVFQVHQEV 283

Query: 421 PRTERGDVLIFMSGISEISSIVRAAQEYN----EKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P +   D+L+F++G  EI ++ +  ++ +    +     +V+PL+++L   +Q RVF  A
Sbjct: 284 PASH--DILVFLTGQEEIEAMTKTCRDISKHLPDDCPKMVVMPLYASLPHSQQLRVFQNA 341

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+  + +  L    +SKA A QR 
Sbjct: 342 PKGQRKVILSTNIAETSITIPGIKYVVDTGMVKAKKYNPESGLEVLAVQKVSKAQAWQRT 401

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   G+CYRLY EE++    E + PEI+R ++ S++L L+ + + +V  F F+  P
Sbjct: 402 GRAGREDSGICYRLYKEEEFEKFEEMTVPEIQRCNLASVMLQLLVLRVPNVHTFDFMSKP 461

Query: 597 PAENIESSVRSLTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I++++  L   GA++ K     +T LG+ ++  P++    K ++    FH  + +L
Sbjct: 462 SPDSIQAAIDQLHLLGAVERKGDQIVLTPLGKKMAAFPLEPKFSKTILLSPKFHCTEEIL 521

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N A +  + + ARK+  S+ GD +T+LN Y+ +    K+  ++K WC
Sbjct: 522 TIVSLLSVDSVLHNPASKRDEVQAARKKFISSEGDHITLLNIYRAF----KNLGKNKDWC 577

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           +   I  +    V ++RSQ + +
Sbjct: 578 RENFINGRNMTMVLEVRSQLRDI 600



 Score =  106 bits (265), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 3/117 (2%)

Query: 29  MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IAC 85
           M + E + SLP+   + +II  + K   V+I G+TG GK+TQIPQYL +A   R   IA 
Sbjct: 63  MTVEEQRRSLPIYLARSQIIAQLRKLDSVVIIGETGSGKTTQIPQYLYEASIGRQSIIAV 122

Query: 86  TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
           TQPRR+A ISL+ RV+ E  ++ S LVGY +RFE    E+TKI F+T+G+LLR+  G
Sbjct: 123 TQPRRVAAISLATRVSEERRTELSKLVGYTVRFEDVTSEETKIKFLTDGMLLREAIG 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 78/147 (53%), Gaps = 9/147 (6%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+CYRLY EE++    E + PEI+R ++ S++L L+ + + +V  F F+  P  ++
Sbjct: 406 REDSGICYRLYKEEEFEKFEEMTVPEIQRCNLASVMLQLLVLRVPNVHTFDFMSKPSPDS 465

Query: 869 IESSVRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVFGSMFH------QIDT 919
           I++++  L   GA++ K     +T LG+ ++  P++    K ++    FH       I +
Sbjct: 466 IQAAIDQLHLLGAVERKGDQIVLTPLGKKMAAFPLEPKFSKTILLSPKFHCTEEILTIVS 525

Query: 920 MLLLDLALNFGAIDSKERVTSLGRFLS 946
           +L +D  L+  A    E   +  +F+S
Sbjct: 526 LLSVDSVLHNPASKRDEVQAARKKFIS 552



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 1094 RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 1152
            R E + + E + +   D   ++ A  D  L  Y V++LDE HER +H D L GV+K    
Sbjct: 154  RFEDVTSEETKIKFLTDGMLLREAIGDPLLRKYSVVILDEAHERTIHTDVLFGVVKSAQK 213

Query: 1153 STAE-----VKIILMSATINIELFHTYFN 1176
               E     +KII+MSAT++++LF  YFN
Sbjct: 214  KRKEQEKQPLKIIIMSATMDVDLFSEYFN 242


>gi|417518232|ref|ZP_12180634.1| ATP-dependent helicase hrpA, partial [Salmonella enterica subsp.
           enterica serovar Uganda str. R8-3404]
 gi|353649635|gb|EHC92215.1| ATP-dependent helicase hrpA, partial [Salmonella enterica subsp.
           enterica serovar Uganda str. R8-3404]
          Length = 991

 Score =  253 bits (645), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 162/447 (36%), Positives = 248/447 (55%), Gaps = 25/447 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L       I   +D+   R   GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGRESPGD 292

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +LIFMSG  EI     A  + N +     VLPL++ LS  EQ+RVF       R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  VR 
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468

Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVD--IPLGKMLV-FGSMFHQ-IDTVLSLAAV 658
           L + GAI + E     ++T LGR LS LPVD  + L ++ V   +  H  +   + + + 
Sbjct: 469 LEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLALSQLPVDLEAQKHGCVREAMIITSA 528

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKR 715
           LS+Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+ 
Sbjct: 529 LSIQDPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNQFRRLCRT 587

Query: 716 RGIEEQRFYEVTKLRSQFKQVLGDSGL 742
             +   R  E   + +Q +QV+ + G+
Sbjct: 588 DYLNYLRVREWQDIYTQLRQVVKELGI 614



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 62/98 (63%), Gaps = 5/98 (5%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   N
Sbjct: 402 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 461

Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVD 901
           I+  VR L + GAI + E     ++T LGR LS LPVD
Sbjct: 462 IQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVD 499



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 3/105 (2%)

Query: 36  NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
            +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A
Sbjct: 75  QNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E  ++    +GY++RF  H    T +  +T+G+LL
Sbjct: 135 ARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILL 179



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K LL    ++K+I+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|260598056|ref|YP_003210627.1| ATP-dependent RNA helicase HrpA [Cronobacter turicensis z3032]
 gi|260217233|emb|CBA31134.1| ATP-dependent RNA helicase hrpA [Cronobacter turicensis z3032]
          Length = 1301

 Score =  253 bits (645), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 244/445 (54%), Gaps = 25/445 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKIIITSATIDPERFSR 239

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIID--KKYPRTER 425
           +FN  A II+V GR YP+++ Y PIVE  D T+ ++L         +I D  ++  R   
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ--------AIFDAVEELGREGP 290

Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           GD+LIFMSG  EI        + N       VLPL++ LS  EQ+RVF       R+ ++
Sbjct: 291 GDILIFMSGEREIRDTADGLMKLNLPHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVL 346

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G
Sbjct: 347 ATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEG 406

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 407 ICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGV 466

Query: 606 RSLTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
           R L + GAI +       ++T LGR LS LPVD  L +M++       +   + + + LS
Sbjct: 467 RLLEELGAITTDAQASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALS 526

Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRG 717
           +Q P      +    +   +       D L  +N +  +LG ++  + S   ++ C+   
Sbjct: 527 IQDPRERPLDKQQASDEKHRRFHDKESDFLGFVNLWN-YLGEQQKALSSNQFRRLCRTDY 585

Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL 742
           +   R  E   + +Q +QV+ + G+
Sbjct: 586 LNYLRVREWQDIYTQLRQVVKELGI 610



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
           NI+  VR L + GAI +       ++T LGR LS LPVD  L +M++       +   ++
Sbjct: 461 NIQDGVRLLEELGAITTDAQASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 521 ITSALSIQ--DPRER 533



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I++ V   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 76  NLPVSQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAA 135

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  ++    VGY++RF  H  + T +  +T+G+LL
Sbjct: 136 RTVANRIAEELHTEPGGCVGYKVRFSDHVSDNTMVKLMTDGILL 179



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++KII+ SATI+ E F  
Sbjct: 180  AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKIIITSATIDPERFSR 239

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 240  HFNNAPIIEVSGRT 253


>gi|449491080|ref|XP_002195343.2| PREDICTED: ATP-dependent RNA helicase DHX8 [Taeniopygia guttata]
          Length = 1113

 Score =  253 bits (645), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 562 ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 621

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 622 FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 670

Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
           +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 671 VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 729

Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
           ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 730 IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 789

Query: 545 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
           G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 790 GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 849

Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
           ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 850 AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 909

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
            F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 910 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 965

Query: 724 YEVTKLRSQFKQVLG 738
                +R   KQ+LG
Sbjct: 966 RRAQDIR---KQMLG 977



 Score =  100 bits (248), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T + I E + SLP+ + K+++I  V   +++I+ 
Sbjct: 423 MMPNDIPEWKK--HAFGGNKASYGKKTQLSIIEQRESLPIFRLKEQLIQAVHDNQILIVI 480

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 481 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 540

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 541 FEDCTSPETVIKYMTDGMLLRE 562



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 786 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 845

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 846 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 901



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 566  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 622


>gi|221054143|ref|XP_002261819.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193808279|emb|CAQ38982.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 1218

 Score =  253 bits (645), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 149/429 (34%), Positives = 242/429 (56%), Gaps = 21/429 (4%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E  +D  LS Y  ++LDE HER +  D L  ++K ++    + K+I+ SAT++ E F TY
Sbjct: 663  ETLSDTMLSKYSFIILDEAHERTISTDILFCLLKDVVKRRPDFKLIVTSATLDAEKFSTY 722

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   + I  +PG+++P+++ +    E D  ++        I +L+I   ++P    GD+L
Sbjct: 723  FFN-SPIFTIPGKIFPVEILHSKEPESDYVEA------CLITVLNIHLNEHP----GDIL 771

Query: 430  IFMSGISEISSIVRAAQEYNEKSQGW-----IVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI++      E  +K +       I+LP++S+L  E Q  +F  AP+G RKC+
Sbjct: 772  VFLTGQDEINTACEILHERMKKLESMSPPPLIILPIYSSLPSEMQSVIFDPAPQGCRKCV 831

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAE S+TIDGI FV+D G  K   YD    M +L    ISKA+A+QR GRAGRTGP
Sbjct: 832  LATNIAEASLTIDGIFFVIDPGFCKIRKYDSKRDMDSLVVAPISKANAKQRAGRAGRTGP 891

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E+ Y + +AE S PEI+R+++ S +L L  +G+ D   F F+++P  + +  
Sbjct: 892  GKCYRLYTEDAYKNEMAETSIPEIQRINLGSTVLLLKALGVNDFLHFDFMDSPSVDTLIH 951

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            S+ +L   GA+D    +T LG+ +S+ P++  L K+L+    F+  D V+++ ++LSVQ+
Sbjct: 952  SLENLYYLGALDDNGYLTKLGKKMSNFPMEPTLSKILLTSINFNCADDVVTIVSMLSVQN 1011

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD +T LN Y  W    ++   S  WC    I  +  
Sbjct: 1012 IFYRPQNKALLADKKKNKFIMPQGDLITYLNIYNRW----RENNYSNYWCHENFIHSRAL 1067

Query: 724  YEVTKLRSQ 732
                 +R Q
Sbjct: 1068 RRSQDVRKQ 1076



 Score = 97.1 bits (240), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 6/135 (4%)

Query: 8   EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
           EW+   + YL           M + E +  LP+   K++++  + K  V+I+ G+TG GK
Sbjct: 532 EWR---KNYLHNNISIGVKNPMPVNEQREKLPIYHLKKDLMKAIAKNNVLIVIGETGSGK 588

Query: 68  STQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE 124
           +TQIPQYL +A +     + CTQPRR+A +S++KRV+ E        VGY IRF+     
Sbjct: 589 TTQIPQYLHEANYTDKGIVGCTQPRRVAAMSIAKRVSEEFGCILGQEVGYSIRFDDCTSN 648

Query: 125 KTKIVFITEGLLLRQ 139
            T I ++T+G+LLR+
Sbjct: 649 DTIIKYLTDGMLLRE 663



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 73/116 (62%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E+ Y + +AE S PEI+R+++ S +L L  +G+ D   F F+++P  +
Sbjct: 888  RTGPGKCYRLYTEDAYKNEMAETSIPEIQRINLGSTVLLLKALGVNDFLHFDFMDSPSVD 947

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             +  S+ +L   GA+D    +T LG+ +S+ P++  L K+L+    F+  D ++ +
Sbjct: 948  TLIHSLENLYYLGALDDNGYLTKLGKKMSNFPMEPTLSKILLTSINFNCADDVVTI 1003



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
            +  +D  LS Y  ++LDE HER +  D L  ++K ++    + K+I+ SAT++ E F TY
Sbjct: 663  ETLSDTMLSKYSFIILDEAHERTISTDILFCLLKDVVKRRPDFKLIVTSATLDAEKFSTY 722

Query: 1175 F 1175
            F
Sbjct: 723  F 723


>gi|410979645|ref|XP_003996192.1| PREDICTED: putative ATP-dependent RNA helicase DHX33 [Felis catus]
          Length = 534

 Score =  253 bits (645), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 152/443 (34%), Positives = 250/443 (56%), Gaps = 34/443 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
           E  +D+ L  Y  ++LDE HER +H D L GV+K       E+     K+I+MSAT++++
Sbjct: 5   EAISDSLLRKYSCVILDEAHERTVHTDVLFGVVKAAQKRRKELGRLPLKVIVMSATMDVD 64

Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
           LF  YF   A ++ + GR +PIQ+ Y        TK  + D   Y+   ++S+  I ++ 
Sbjct: 65  LFSQYFGG-APVLYLEGRQHPIQVFY--------TKQPQQD---YLHAALVSVFQIHQEA 112

Query: 421 PRTERGDVLIFMSGISEI---SSIVR-AAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
           P ++  D+L+F++G  EI   S I R  A+   +     +VLPL+++L   +Q RVF  A
Sbjct: 113 PPSQ--DILVFLTGQEEIEATSKICRDIARHLPDGCPSLLVLPLYASLPYAQQLRVFQGA 170

Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
           P+G RK I+STNIAETSITI GI++VVD+G VK   Y+    +  L    +SK  A QR 
Sbjct: 171 PKGCRKVIISTNIAETSITIPGIKYVVDTGMVKAKKYNPDGGLEVLAVQRVSKTQAWQRT 230

Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
           GRAGR   GVCYRLY+E+++    + + PEI+R ++  ++L L+ M + DV  F F+  P
Sbjct: 231 GRAGREDSGVCYRLYTEDEFEKFDKMTVPEIQRCNLAGVMLQLLAMKVPDVLTFDFMSKP 290

Query: 597 PAENIESSVRSLTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
             ++I+++V  L   GA++ K+    +T LGR ++  P++    K ++    FH  + +L
Sbjct: 291 SPDHIQAAVAQLELLGALERKDEQLTLTPLGRKMAAFPLEPRFAKAILLSPKFHCTEEML 350

Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
           ++ ++LSV S   N   R  + +  R++  S+ GD +T+LN Y+ +     +    K WC
Sbjct: 351 TIVSLLSVDSVLCNPPSRRDEVQAVRRKFVSSEGDHVTLLNVYRAFRSAGGN----KDWC 406

Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
           K   +  +      ++R+Q + +
Sbjct: 407 KENFVNSKNVMLAGEVRAQLRDI 429



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 68/118 (57%), Gaps = 3/118 (2%)

Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
           R   GVCYRLY+E+++    + + PEI+R ++  ++L L+ M + DV  F F+  P  ++
Sbjct: 235 REDSGVCYRLYTEDEFEKFDKMTVPEIQRCNLAGVMLQLLAMKVPDVLTFDFMSKPSPDH 294

Query: 869 IESSVRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           I+++V  L   GA++ K+    +T LGR ++  P++    K ++    FH  + ML +
Sbjct: 295 IQAAVAQLELLGALERKDEQLTLTPLGRKMAAFPLEPRFAKAILLSPKFHCTEEMLTI 352



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 5/64 (7%)

Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
            +D+ L  Y  ++LDE HER +H D L GV+K       E     +K+I+MSAT++++LF 
Sbjct: 8    SDSLLRKYSCVILDEAHERTVHTDVLFGVVKAAQKRRKELGRLPLKVIVMSATMDVDLFS 67

Query: 1173 TYFN 1176
             YF 
Sbjct: 68   QYFG 71


>gi|418462352|ref|ZP_13033406.1| ATP-dependent helicase HrpA [Saccharomonospora azurea SZMC 14600]
 gi|359737180|gb|EHK86113.1| ATP-dependent helicase HrpA [Saccharomonospora azurea SZMC 14600]
          Length = 1277

 Score =  253 bits (645), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 162/449 (36%), Positives = 252/449 (56%), Gaps = 21/449 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG +K +L    ++K+I+ SATI+ E F  
Sbjct: 159 AEIQHDRLLRQYDTIIIDEAHERSLNIDFLLGYLKRILPRRPDLKVIITSATIDPERFSR 218

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE-RGD 427
           +F+  A I++V GR YP+++ Y PIV+ D   ++         I + +D+   R E  GD
Sbjct: 219 HFDD-APIVEVSGRTYPVEVRYRPIVDPDDPDADPDR-DQVQAICAAVDEL--RAEGPGD 274

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
           +L+F+SG  EI     A +  N  +    VLPL++ LS  +Q RVF   P   R+ +++T
Sbjct: 275 ILVFLSGEREIRDAAEAVEAMNLPNTE--VLPLYARLSAADQHRVFK--PHRGRRIVLAT 330

Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
           N+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GRT  G+C
Sbjct: 331 NVAETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIEPISQASANQRKGRCGRTSDGIC 390

Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
            RLYSE+ +    E++ PEI R ++ S++L ++ +GLGD+  FPF+E P    I + V+ 
Sbjct: 391 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMISLGLGDIGAFPFVEPPDRRQITAGVQL 450

Query: 608 LTQHGAID-SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFT 666
           LT+ GAID S + +T +GR L+ LPVD  +G+M+V       +  V+ +AA LS+Q P  
Sbjct: 451 LTELGAIDASGKELTPVGRKLAQLPVDPRMGRMVVEAGELGCVSEVMVIAAALSIQDPRE 510

Query: 667 NRAFRDPDCETARKELESNHGDPLTVLNAYKE-WLGVKKDRV-----RSKKWCKRRGIEE 720
               R  + +    +L +   DP +   AY   W  V++ +      R +K C+   +  
Sbjct: 511 ----RPSEKQQHADQLHARFADPNSDFLAYLNLWNYVREQQKALSNNRFRKLCRSEYLNY 566

Query: 721 QRFYEVTKLRSQFKQVLGDSGLI-TDIPG 748
            R  E   + SQ +Q+    G+   D+P 
Sbjct: 567 LRIREWQDIHSQLRQLAKPLGITPNDVPA 595



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 81/131 (61%), Gaps = 3/131 (2%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RT  G+C RLYSE+ +    E++ PEI R ++ S++L ++ +GLGD+  FPF+E P   
Sbjct: 383 GRTSDGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMISLGLGDIGAFPFVEPPDRR 442

Query: 868 NIESSVRSLTQHGAID-SKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
            I + V+ LT+ GAID S + +T +GR L+ LPVD  +G+M+V       +  ++++  A
Sbjct: 443 QITAGVQLLTELGAIDASGKELTPVGRKLAQLPVDPRMGRMVVEAGELGCVSEVMVIAAA 502

Query: 927 LNFGAIDSKER 937
           L+    D +ER
Sbjct: 503 LSIQ--DPRER 511



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACI 94
           LPV+  + ++ D +   +VVI+AG+TG GK+TQ+P+  ++ G     +I  TQPRR+A  
Sbjct: 56  LPVSARRDDLADVIRDNQVVIVAGETGSGKTTQLPKICLELGLGVRGQIGHTQPRRLAAR 115

Query: 95  SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
           ++++R+A E  ++    VGY++RF     + T +  +T+G+LL
Sbjct: 116 TVAERIAAELKTELGQTVGYKVRFTDTSGDDTLVKLMTDGILL 158



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG +K +L    ++K+I+ SATI+ E F  
Sbjct: 159  AEIQHDRLLRQYDTIIIDEAHERSLNIDFLLGYLKRILPRRPDLKVIITSATIDPERFSR 218

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 219  HFDDAPIVEVSGRT 232


>gi|127797813|gb|AAH47327.2| DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Homo sapiens]
          Length = 1220

 Score =  253 bits (645), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 155/430 (36%), Positives = 235/430 (54%), Gaps = 22/430 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 669  ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 728

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 729  FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 777

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 778  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 836

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 837  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 896

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 897  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 956

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 957  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1016

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1017 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1072

Query: 724  YEVTKLRSQF 733
                 +R Q 
Sbjct: 1073 RRAQDIREQM 1082



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T M I E + SLP+ + K++++  V   +++I+ 
Sbjct: 530 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 587

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 588 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 647

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 648 FEDCTSPETVIKYMTDGMLLRE 669



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809  RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 893  RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 952

Query: 868  NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
             + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 953  TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1008



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L+ Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 673  DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 729


>gi|123442355|ref|YP_001006334.1| ATP-dependent RNA helicase HrpA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089316|emb|CAL12163.1| ATP-dependent helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 1280

 Score =  253 bits (645), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 155/444 (34%), Positives = 248/444 (55%), Gaps = 24/444 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F +
Sbjct: 161 AEIQQDRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSS 220

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIV+  D  + ++L       I   +D+   R   GD
Sbjct: 221 HFNN-APIIEVSGRTYPVEVRYRPIVDDADDVERDQLQA-----IFDAVDE-LGRESPGD 273

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF--HYAPEGLRKCIV 485
           +LIFMSG  EI     A  + N       VLPL++ LS  EQ+RVF  H+     R+ ++
Sbjct: 274 ILIFMSGEREIRDTADALMKQNLPHTE--VLPLYARLSNSEQNRVFQSHHG----RRIVL 327

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G
Sbjct: 328 ATNVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSDG 387

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 388 ICIRLYSEQDFLSRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGV 447

Query: 606 RSLTQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
           R L + GAI    +  +++T LGR L+ LPVD  L +M++       +  ++ + + LS+
Sbjct: 448 RLLEELGAIQTASNGHQQLTPLGRQLAQLPVDPRLARMVLEAQKSGSVRELMIITSALSI 507

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGI 718
           Q P      +    +   +       D L  +N + ++L  ++  + S   +K C+   +
Sbjct: 508 QDPRERPMDKQQASDEKHRRFADKDSDFLAFVNLW-DYLKEQQKELSSAQFRKLCRSDFL 566

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL 742
              R  E   + +Q +QV+ + G+
Sbjct: 567 NYLRVREWQDIYTQLRQVVKELGI 590



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 79/134 (58%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 382 GRVSDGICIRLYSEQDFLSRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKR 441

Query: 868 NIESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI+  VR L + GAI    +  +++T LGR L+ LPVD  L +M++       +  ++++
Sbjct: 442 NIQDGVRLLEELGAIQTASNGHQQLTPLGRQLAQLPVDPRLARMVLEAQKSGSVRELMII 501

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 502 TSALSIQ--DPRER 513



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
           +LPV+Q KQ+I + +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 57  NLPVSQKKQDIYNAIRDNQVVIVAGETGSGKTTQLPKICLELGRGVTGLIGHTQPRRLAA 116

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  +     VGY++RF     E T +  +T+G+LL
Sbjct: 117 RTVANRIADELDTSLGGCVGYKVRFNDQVGENTLVKLMTDGILL 160



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F +
Sbjct: 161  AEIQQDRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSS 220

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 221  HFNNAPIIEVSGRT 234


>gi|409083681|gb|EKM84038.1| hypothetical protein AGABI1DRAFT_110634 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 985

 Score =  252 bits (644), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 235/434 (54%), Gaps = 23/434 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D   SSY V++LDE HER +  D L G++K  +    ++K+I+ SAT++ E F  Y
Sbjct: 427 ECLIDPLCSSYSVIMLDEAHERTIATDVLFGLLKKAVKRRPDLKLIVTSATLDAEKFSKY 486

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F     I  +PGR YP+++ Y    E D   +        I ++ I   + P    GDVL
Sbjct: 487 FYGCP-IFTIPGRAYPVEMLYTKDPENDYLDAS------LITVMQIHLSEPP----GDVL 535

Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F++G  EI +    +    +    K    I+LP++S L  E Q RVF   P G RK ++
Sbjct: 536 LFLTGQEEIDTACEILFERMKALGPKVPELIILPIYSALPSEVQSRVFEPTPPGARKVVI 595

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+TI GI +VVD G  K+ +YD    M +L    IS+A A QR GRAGRTGPG
Sbjct: 596 ATNVAETSLTIPGIYYVVDPGFSKQNAYDPRLGMDSLVVMPISQAQARQRAGRAGRTGPG 655

Query: 546 VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            CYRLY+E  Y + +   S P+I+R ++ S +L L  MG+ D+  F F++ PP++ + ++
Sbjct: 656 KCYRLYTEAAYRNEMLPNSIPDIQRTNLSSTILQLKAMGINDLLSFDFMDPPPSQTMLTA 715

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           + +L    A+D +  +T LGR ++D P++ PL KM++        + +LS+ A+LSVQ+ 
Sbjct: 716 LENLYALSALDDEGLLTRLGRKMADFPMEPPLAKMVIASVDLGCSEDILSIVAMLSVQTV 775

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F     +    ++ + +     GD LT+L  Y  W    K    S  WC    I+ +   
Sbjct: 776 FYRPKEKQSQADSKKAKFHQPEGDHLTLLTVYNGW----KAANFSNPWCYENFIQARSMR 831

Query: 725 EVTKLRSQFKQVLG 738
               +R   KQ+LG
Sbjct: 832 RAQDVR---KQLLG 842



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 77/116 (66%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RI 83
           T + I++ + SLP+ + + +++  +   +V+I+ GDTG GK+TQ+ QY+ + G+    RI
Sbjct: 312 TNLSIQDQRKSLPIYKLRNQLLQAIGDHQVLIVVGDTGSGKTTQMVQYMAEEGYADKGRI 371

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A +S++KRV+ E   +    VGY IRFE     +T+I ++T+G+L R+
Sbjct: 372 GCTQPRRVAAMSVAKRVSEEVGCRLGQEVGYTIRFEDCTSPETRIKYMTDGMLQRE 427



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y + +   S P+I+R ++ S +L L  MG+ D+  F F++ PP++
Sbjct: 651 RTGPGKCYRLYTEAAYRNEMLPNSIPDIQRTNLSSTILQLKAMGINDLLSFDFMDPPPSQ 710

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            + +++ +L    A+D +  +T LGR ++D P++ PL KM++
Sbjct: 711 TMLTALENLYALSALDDEGLLTRLGRKMADFPMEPPLAKMVI 752



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPK---QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            +E G  +   D    E R+K+      Q +   D   SSY V++LDE HER +  D L G
Sbjct: 398  QEVGYTIRFEDCTSPETRIKYMTDGMLQRECLIDPLCSSYSVIMLDEAHERTIATDVLFG 457

Query: 1146 VIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            ++K  +    ++K+I+ SAT++ E F  YF
Sbjct: 458  LLKKAVKRRPDLKLIVTSATLDAEKFSKYF 487


>gi|407035379|gb|EKE37673.1| helicase, putative [Entamoeba nuttalli P19]
          Length = 845

 Score =  252 bits (644), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 150/444 (33%), Positives = 245/444 (55%), Gaps = 33/444 (7%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           EV  D  L  Y V+++DE+HER L+ D L G+IK ++    ++K+I+ +ATIN      +
Sbjct: 324 EVIKDPMLEEYSVIIMDEVHERSLNTDILFGIIKRIIQERNDLKLIITTATINENKLIEF 383

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYI-----RILSIIDKKYPRTE 424
           F  I  II + GR +P+ ++Y            K  P  YI     ++LSI    +    
Sbjct: 384 FG-IVPIIHIEGRTFPVSVQYL-----------KTTPNDYIEMAIRQVLSI----HMNQG 427

Query: 425 RGDVLIFMSGISEIS-SIVRAAQEYNE----KSQGWIVLPLHSTLSLEEQDRVFHYAPEG 479
           +GD+L+FM+G  +I  S     ++Y E      Q   ++P++S LS E Q ++F  + + 
Sbjct: 428 KGDILVFMTGQEDIEVSCELLKEKYKEIKVENKQDIEIIPIYSQLSNEAQKKIFIKSNK- 486

Query: 480 LRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRA 539
            RK I+STNIAETS+T+ GI++V+DSG  K   Y+    M +LQ F  SK +AEQRKGRA
Sbjct: 487 -RKVIISTNIAETSLTVQGIKYVIDSGLGKWKIYNPKIGMDSLQIFPESKQNAEQRKGRA 545

Query: 540 GRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
           GRT  G+CYRL++E  +   L E   PEI+R ++ + +L L  +G+ D+ K   ++ P  
Sbjct: 546 GRTEAGICYRLFTENTFKYDLLESPIPEIQRTNLSNTVLELKAIGINDINKIELIDKPNE 605

Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
           E I +S+  L   GA+D    +T LGR + +LP++  L KML+    F   +  L++AA+
Sbjct: 606 ERILNSMYELWILGALDEIGNITELGREMVELPLEPSLSKMLIVAQKFECTEEALTIAAM 665

Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGI 718
           L+V + F     R  + ++ R++      D +T++N Y +W    K+   +++WC +  I
Sbjct: 666 LTVPNVFLRPKERQEEADSTREKFYQPDSDHITLVNVYNQW----KEHEENEQWCDKNYI 721

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL 742
             +   +   +R Q K ++   G+
Sbjct: 722 NIKAMNKAKDVRKQLKDMMNKKGI 745



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 77/112 (68%), Gaps = 3/112 (2%)

Query: 31  IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQ 87
           I+  +  LP+   K+EII ++ + ++ II G+TG GK+TQI QY+V+ G     RI CTQ
Sbjct: 213 IKRNREELPIFFKKKEIITSIKENQINIIIGETGSGKTTQIAQYIVEEGIGKNGRIGCTQ 272

Query: 88  PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
           PRR+A +S+++RV+ E  S+    VGY IRFE    +KTKI F+T+G+LLR+
Sbjct: 273 PRRVAAVSVAQRVSEEVGSKLGEEVGYLIRFEDKTSKKTKIKFMTDGILLRE 324



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RT  G+CYRL++E  +   L E   PEI+R ++ + +L L  +G+ D+ K   ++ P  E
Sbjct: 547 RTEAGICYRLFTENTFKYDLLESPIPEIQRTNLSNTVLELKAIGINDINKIELIDKPNEE 606

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I +S+  L   GA+D    +T LGR + +LP++  L KML+    F   +  L +   L
Sbjct: 607 RILNSMYELWILGALDEIGNITELGREMVELPLEPSLSKMLIVAQKFECTEEALTIAAML 666



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 4/61 (6%)

Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN----IEL 1170
            +V  D  L  Y V+++DE+HER L+ D L G+IK ++    ++K+I+ +ATIN    IE 
Sbjct: 324  EVIKDPMLEEYSVIIMDEVHERSLNTDILFGIIKRIIQERNDLKLIITTATINENKLIEF 383

Query: 1171 F 1171
            F
Sbjct: 384  F 384


>gi|397625283|gb|EJK67733.1| hypothetical protein THAOC_11198 [Thalassiosira oceanica]
          Length = 1030

 Score =  252 bits (644), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 149/428 (34%), Positives = 242/428 (56%), Gaps = 23/428 (5%)

Query: 314  DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
            D  L+ Y  +++DE HER L+ D L GV++ +    +++K+I+ SAT++ ++F  +F  +
Sbjct: 597  DPDLNKYSAVIMDEAHERSLNTDVLFGVLRKVAARRSDLKLIVTSATLSADVFSNFFGGV 656

Query: 374  AKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMS 433
              I ++PGR +P++  +   V+ D   +         + L I     P    GD+LIFM+
Sbjct: 657  P-IFRIPGRTFPVETYFSKSVQEDYVMAA------VKQTLQIHFNSPP----GDILIFMT 705

Query: 434  GISEISSIVRAAQEYNE------KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
            G  +I        E  E       S+  +VLP++S L  + Q ++F  AP+G+RKCIVST
Sbjct: 706  GQEDIEGTCTVLAEKMEALEDEHNSKPLLVLPMYSQLPADLQAKIFDAAPDGVRKCIVST 765

Query: 488  NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
            N+AETS+T+DGI++V+D G  K   Y+    M  L    +S+A+A QR GRAGRTGPG C
Sbjct: 766  NVAETSLTVDGIKYVIDCGYCKLKVYNPKIGMDALNVTPVSRANANQRSGRAGRTGPGFC 825

Query: 548  YRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
            +RLY++ Q+   L E S PEI+R ++ +++L L  +G+ ++ +F F++ PP +NI +S+ 
Sbjct: 826  FRLYTDRQFREELMETSVPEIQRTNLSNVVLLLKSLGIKNLMEFNFMDPPPEDNIMTSLY 885

Query: 607  SLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDT-VLSLAAVLSVQSPF 665
             L   GAID+   +T+LGR + + P+D PL KML+F     +  + VL + ++LSV S F
Sbjct: 886  QLWILGAIDNTGDLTTLGRRMVEFPLDPPLSKMLLFAHEHGKCSSEVLIVVSMLSVPSVF 945

Query: 666  TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYE 725
                 R+ + +  R++      D LT+LN Y      K D      WC R  I  +   +
Sbjct: 946  FRPKNREEESDAVREKFFVPESDHLTLLNVYLRAKQYKFD----NDWCTRHFIHSKGIRK 1001

Query: 726  VTKLRSQF 733
              ++ +Q 
Sbjct: 1002 AREVHAQL 1009



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 79/120 (65%), Gaps = 1/120 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG C+RLY++ Q+   L E S PEI+R ++ +++L L  +G+ ++ +F F++ PP +
Sbjct: 819 RTGPGFCFRLYTDRQFREELMETSVPEIQRTNLSNVVLLLKSLGIKNLMEFNFMDPPPED 878

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
           NI +S+  L   GAID+   +TTLGR + + P+D PL KML+F     +  + +L+ +++
Sbjct: 879 NIMTSLYQLWILGAIDNTGDLTTLGRRMVEFPLDPPLSKMLLFAHEHGKCSSEVLIVVSM 938



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 18/133 (13%)

Query: 25  FSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR-- 82
           FS    IRE +  LP    +  ++ T+ +  +VI+ G+TG GK+TQ+ QYL + G+    
Sbjct: 461 FSRTKTIREQREYLPAFSVRDSLMQTIRENNIVIVVGETGSGKTTQLTQYLHEEGYTDYG 520

Query: 83  -IACTQPRRIACISLSKRVAYETLSQYSN---------------LVGYQIRFEKHRREKT 126
            + CTQPRR+A +S++KRV+ E  +   +                VGY IRFE    E T
Sbjct: 521 IVGCTQPRRVAAMSVAKRVSEEAAAMVKDEGKRDIIPEVDGLGGTVGYSIRFEDQTNEHT 580

Query: 127 KIVFITEGLLLRQ 139
            I ++T+G+LLR+
Sbjct: 581 VIKYMTDGVLLRE 593



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 39/60 (65%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D  L+ Y  +++DE HER L+ D L GV++ +    +++K+I+ SAT++ ++F  +F  +
Sbjct: 597  DPDLNKYSAVIMDEAHERSLNTDVLFGVLRKVAARRSDLKLIVTSATLSADVFSNFFGGV 656


>gi|392863796|gb|EAS35435.2| ATP-dependent RNA helicase DHX8 [Coccidioides immitis RS]
          Length = 1225

 Score =  252 bits (644), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 155/435 (35%), Positives = 235/435 (54%), Gaps = 24/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E+  D  L  Y V++LDE HER +  D L G++K  +    ++K+I+ SAT++ E F  Y
Sbjct: 665  EILLDPDLKKYSVIMLDEAHERTIATDVLFGLLKKTIKRRPDLKLIVTSATLDAEKFSEY 724

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE-RGDV 428
            FN    I  +PGR +P+++ Y    E D           Y+    +   +   TE  GD+
Sbjct: 725  FNGCP-IFTIPGRTFPVEIMYSREPETD-----------YLDAALVTVMQIHLTEPEGDI 772

Query: 429  LIFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKC 483
            L+F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK 
Sbjct: 773  LLFLTGQEEIDTSCEILYE-RMKSLGPNVPELIILPVYSALPSEMQSRIFDPAPPGSRKV 831

Query: 484  IVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543
            +++TNIAETSITID I +V+D G VK+ +YD    M +L    IS+A A+QR GRAGRTG
Sbjct: 832  VIATNIAETSITIDHIYYVIDPGFVKQNAYDPKLGMDSLVVTPISQAQAKQRAGRAGRTG 891

Query: 544  PGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
            PG C+RLY+E  + S +   S PEI+R ++   +L L  MG+ D+  F F++ PP   + 
Sbjct: 892  PGKCFRLYTEAAFQSEMLPTSIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTML 951

Query: 603  SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
            +++  L    A+D +  +T LGR ++D P++  L K+L+        D VLS+ A+LSVQ
Sbjct: 952  TALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVDMGCSDEVLSIVAMLSVQ 1011

Query: 663  SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
            + F     +    +  + +    HGD LT+LN Y  W    K+   S  WC    I+ ++
Sbjct: 1012 NVFYRPKEKQQQADQKKSKFHDPHGDHLTLLNVYNAW----KNSRYSNPWCFENFIQARQ 1067

Query: 723  FYEVTKLRSQFKQVL 737
                  +R Q   ++
Sbjct: 1068 MRRAQDVRQQLVSIM 1082



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 80/116 (68%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---I 83
           T + I++ + SLPV ++++++++ V K +++I+ GDTG GK+TQ+ QYL +AGF     I
Sbjct: 550 TNLTIKQQRESLPVFKFRKQLLEAVHKNQLLIVVGDTGSGKTTQVTQYLAEAGFANDGMI 609

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A +S++KRVA E   +    VGY IRFE      TKI ++T+G+L R+
Sbjct: 610 GCTQPRRVAAVSVAKRVAEEVGCRLGQEVGYTIRFEDCSSPDTKIKYMTDGILQRE 665



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG C+RLY+E  + S +   S PEI+R ++   +L L  MG+ D+  F F++ PP 
Sbjct: 888 GRTGPGKCFRLYTEAAFQSEMLPTSIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPT 947

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
             + +++  L    A+D +  +T LGR ++D P++  L K+L+
Sbjct: 948 NTMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLI 990



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q ++  D  L  Y V++LDE HER +  D L G++K  +    ++K+I+ SAT++ E F 
Sbjct: 663  QREILLDPDLKKYSVIMLDEAHERTIATDVLFGLLKKTIKRRPDLKLIVTSATLDAEKFS 722

Query: 1173 TYFN 1176
             YFN
Sbjct: 723  EYFN 726


>gi|426201261|gb|EKV51184.1| hypothetical protein AGABI2DRAFT_189464 [Agaricus bisporus var.
           bisporus H97]
          Length = 985

 Score =  252 bits (644), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 235/434 (54%), Gaps = 23/434 (5%)

Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
           E   D   SSY V++LDE HER +  D L G++K  +    ++K+I+ SAT++ E F  Y
Sbjct: 427 ECLIDPLCSSYSVIMLDEAHERTIATDVLFGLLKKAVKRRPDLKLIVTSATLDAEKFSKY 486

Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
           F     I  +PGR YP+++ Y    E D   +        I ++ I   + P    GDVL
Sbjct: 487 FYGCP-IFTIPGRAYPVEMLYTKDPENDYLDAS------LITVMQIHLSEPP----GDVL 535

Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
           +F++G  EI +    +    +    K    I+LP++S L  E Q RVF   P G RK ++
Sbjct: 536 LFLTGQEEIDTACEILFERMKALGPKVPELIILPIYSALPSEVQSRVFEPTPPGARKVVI 595

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+TI GI +VVD G  K+ +YD    M +L    IS+A A QR GRAGRTGPG
Sbjct: 596 ATNVAETSLTIPGIYYVVDPGFSKQNAYDPRLGMDSLVVMPISQAQARQRAGRAGRTGPG 655

Query: 546 VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
            CYRLY+E  Y + +   S P+I+R ++ S +L L  MG+ D+  F F++ PP++ + ++
Sbjct: 656 KCYRLYTEAAYRNEMLPNSIPDIQRTNLSSTILQLKAMGINDLLSFDFMDPPPSQTMLTA 715

Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
           + +L    A+D +  +T LGR ++D P++ PL KM++        + +LS+ A+LSVQ+ 
Sbjct: 716 LENLYALSALDDEGLLTRLGRKMADFPMEPPLAKMVIASVDLGCSEDILSIVAMLSVQTV 775

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
           F     +    ++ + +     GD LT+L  Y  W    K    S  WC    I+ +   
Sbjct: 776 FYRPKEKQSQADSKKAKFHQPEGDHLTLLTVYNGW----KAANFSNPWCYENFIQARSMR 831

Query: 725 EVTKLRSQFKQVLG 738
               +R   KQ+LG
Sbjct: 832 RAQDVR---KQLLG 842



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 77/116 (66%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RI 83
           T + I++ + SLP+ + + +++  +   +V+I+ GDTG GK+TQ+ QY+ + G+    RI
Sbjct: 312 TNLSIQDQRKSLPIYKLRNQLLQAIGDHQVLIVVGDTGSGKTTQMVQYMAEEGYADKGRI 371

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A +S++KRV+ E   +    VGY IRFE     +T+I ++T+G+L R+
Sbjct: 372 GCTQPRRVAAMSVAKRVSEEVGCRLGQEVGYTIRFEDCTSPETRIKYMTDGMLQRE 427



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y + +   S P+I+R ++ S +L L  MG+ D+  F F++ PP++
Sbjct: 651 RTGPGKCYRLYTEAAYRNEMLPNSIPDIQRTNLSSTILQLKAMGINDLLSFDFMDPPPSQ 710

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
            + +++ +L    A+D +  +T LGR ++D P++ PL KM++
Sbjct: 711 TMLTALENLYALSALDDEGLLTRLGRKMADFPMEPPLAKMVI 752



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 1089 EEAGERLESMDANEVEFRLKHDPK---QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLG 1145
            +E G  +   D    E R+K+      Q +   D   SSY V++LDE HER +  D L G
Sbjct: 398  QEVGYTIRFEDCTSPETRIKYMTDGMLQRECLIDPLCSSYSVIMLDEAHERTIATDVLFG 457

Query: 1146 VIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            ++K  +    ++K+I+ SAT++ E F  YF
Sbjct: 458  LLKKAVKRRPDLKLIVTSATLDAEKFSKYF 487


>gi|119192732|ref|XP_001246972.1| hypothetical protein CIMG_00743 [Coccidioides immitis RS]
          Length = 1215

 Score =  252 bits (644), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 155/435 (35%), Positives = 235/435 (54%), Gaps = 24/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E+  D  L  Y V++LDE HER +  D L G++K  +    ++K+I+ SAT++ E F  Y
Sbjct: 655  EILLDPDLKKYSVIMLDEAHERTIATDVLFGLLKKTIKRRPDLKLIVTSATLDAEKFSEY 714

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE-RGDV 428
            FN    I  +PGR +P+++ Y    E D           Y+    +   +   TE  GD+
Sbjct: 715  FNGCP-IFTIPGRTFPVEIMYSREPETD-----------YLDAALVTVMQIHLTEPEGDI 762

Query: 429  LIFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKC 483
            L+F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK 
Sbjct: 763  LLFLTGQEEIDTSCEILYE-RMKSLGPNVPELIILPVYSALPSEMQSRIFDPAPPGSRKV 821

Query: 484  IVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543
            +++TNIAETSITID I +V+D G VK+ +YD    M +L    IS+A A+QR GRAGRTG
Sbjct: 822  VIATNIAETSITIDHIYYVIDPGFVKQNAYDPKLGMDSLVVTPISQAQAKQRAGRAGRTG 881

Query: 544  PGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
            PG C+RLY+E  + S +   S PEI+R ++   +L L  MG+ D+  F F++ PP   + 
Sbjct: 882  PGKCFRLYTEAAFQSEMLPTSIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTML 941

Query: 603  SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
            +++  L    A+D +  +T LGR ++D P++  L K+L+        D VLS+ A+LSVQ
Sbjct: 942  TALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLIASVDMGCSDEVLSIVAMLSVQ 1001

Query: 663  SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
            + F     +    +  + +    HGD LT+LN Y  W    K+   S  WC    I+ ++
Sbjct: 1002 NVFYRPKEKQQQADQKKSKFHDPHGDHLTLLNVYNAW----KNSRYSNPWCFENFIQARQ 1057

Query: 723  FYEVTKLRSQFKQVL 737
                  +R Q   ++
Sbjct: 1058 MRRAQDVRQQLVSIM 1072



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 80/116 (68%), Gaps = 3/116 (2%)

Query: 27  TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---I 83
           T + I++ + SLPV ++++++++ V K +++I+ GDTG GK+TQ+ QYL +AGF     I
Sbjct: 540 TNLTIKQQRESLPVFKFRKQLLEAVHKNQLLIVVGDTGSGKTTQVTQYLAEAGFANDGMI 599

Query: 84  ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
            CTQPRR+A +S++KRVA E   +    VGY IRFE      TKI ++T+G+L R+
Sbjct: 600 GCTQPRRVAAVSVAKRVAEEVGCRLGQEVGYTIRFEDCSSPDTKIKYMTDGILQRE 655



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
            RTGPG C+RLY+E  + S +   S PEI+R ++   +L L  MG+ D+  F F++ PP 
Sbjct: 878 GRTGPGKCFRLYTEAAFQSEMLPTSIPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPT 937

Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
             + +++  L    A+D +  +T LGR ++D P++  L K+L+
Sbjct: 938 NTMLTALEELYALSALDDEGLLTRLGRKMADFPMEPALAKVLI 980



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
            Q ++  D  L  Y V++LDE HER +  D L G++K  +    ++K+I+ SAT++ E F 
Sbjct: 653  QREILLDPDLKKYSVIMLDEAHERTIATDVLFGLLKKTIKRRPDLKLIVTSATLDAEKFS 712

Query: 1173 TYFN 1176
             YFN
Sbjct: 713  EYFN 716


>gi|238790344|ref|ZP_04634116.1| ATP-dependent helicase HrpA [Yersinia frederiksenii ATCC 33641]
 gi|238721531|gb|EEQ13199.1| ATP-dependent helicase HrpA [Yersinia frederiksenii ATCC 33641]
          Length = 1295

 Score =  252 bits (644), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 247/444 (55%), Gaps = 24/444 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176 AEIQQDRLLMQYDTLIIDEAHERSLNIDFMLGYLRELLPKRPDLKVIITSATIDPERFSK 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIV+  D  + ++L       I   +D+       GD
Sbjct: 236 HFNN-APIIEVSGRTYPVEVRYRPIVDDADDVERDQLQA-----IFDAVDE-LSHESPGD 288

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF--HYAPEGLRKCIV 485
           +LIFMSG  EI     A  + N       VLPL++ LS  EQ+RVF  H+     R+ ++
Sbjct: 289 ILIFMSGEREIRDTADALTKQNLPHTE--VLPLYARLSNSEQNRVFQSHHG----RRIVL 342

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G
Sbjct: 343 ATNVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVSDG 402

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 403 ICIRLYSEQDFLSRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGV 462

Query: 606 RSLTQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
           R L + GAI    +  +++T+LGR L+ LPVD  L +M++       +  ++ + + LS+
Sbjct: 463 RLLEELGAIQTGDNGHQQLTALGRQLAQLPVDPRLARMVLEAQKSGSVRELMIITSALSI 522

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGI 718
           Q P      +    +   +       D L  +N + ++L  ++  + S   +K C+   +
Sbjct: 523 QDPRERPMDKQQASDEKHRRFADKDSDFLAFVNLW-DYLKEQQKELSSAQFRKLCRSDFL 581

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL 742
              R  E   + +Q +QV+ + G+
Sbjct: 582 NYLRVREWQDIYTQLRQVVKELGI 605



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 79/134 (58%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 397 GRVSDGICIRLYSEQDFLSRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKR 456

Query: 868 NIESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI+  VR L + GAI    +  +++T LGR L+ LPVD  L +M++       +  ++++
Sbjct: 457 NIQDGVRLLEELGAIQTGDNGHQQLTALGRQLAQLPVDPRLARMVLEAQKSGSVRELMII 516

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 517 TSALSIQ--DPRER 528



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ+I D +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 72  NLPVSQKKQDIYDAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGVIGHTQPRRLAA 131

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  +     VGY++RF     E T +  +T+G+LL
Sbjct: 132 RTVANRIADELDTSLGGCVGYKVRFNDQVGENTLVKLMTDGILL 175



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ E F  
Sbjct: 176  AEIQQDRLLMQYDTLIIDEAHERSLNIDFMLGYLRELLPKRPDLKVIITSATIDPERFSK 235

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 236  HFNNAPIIEVSGRT 249


>gi|332161717|ref|YP_004298294.1| ATP-dependent RNA helicase HrpA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665947|gb|ADZ42591.1| ATP-dependent RNA helicase HrpA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 1295

 Score =  252 bits (644), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 155/444 (34%), Positives = 248/444 (55%), Gaps = 24/444 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F +
Sbjct: 176 AEIQQDRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSS 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIV+  D  + ++L       I   +D+   R   GD
Sbjct: 236 HFNN-APIIEVSGRTYPVEVRYRPIVDDADDVERDQLQA-----IFDAVDE-LGRESPGD 288

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF--HYAPEGLRKCIV 485
           +LIFMSG  EI     A  + N       VLPL++ LS  EQ+RVF  H+     R+ ++
Sbjct: 289 ILIFMSGEREIRDTADALMKQNLPHTE--VLPLYARLSNSEQNRVFQSHHG----RRIVL 342

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G
Sbjct: 343 ATNVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSDG 402

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 403 ICIRLYSEQDFLSRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGV 462

Query: 606 RSLTQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
           R L + GAI    +  +++T LGR L+ LPVD  L +M++       +  ++ + + LS+
Sbjct: 463 RLLEELGAIQTASNGHQQLTPLGRQLAQLPVDPRLARMVLEAQKSGSVRELMIITSALSI 522

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGI 718
           Q P      +    +   +       D L  +N + ++L  ++  + S   +K C+   +
Sbjct: 523 QDPRERPMDKQQASDEKHRRFADKDSDFLAFVNLW-DYLKEQQKELSSAQFRKLCRSDFL 581

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL 742
              R  E   + +Q +QV+ + G+
Sbjct: 582 NYLRVREWQDIYTQLRQVVKELGI 605



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 79/134 (58%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 397 GRVSDGICIRLYSEQDFLSRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKR 456

Query: 868 NIESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI+  VR L + GAI    +  +++T LGR L+ LPVD  L +M++       +  ++++
Sbjct: 457 NIQDGVRLLEELGAIQTASNGHQQLTPLGRQLAQLPVDPRLARMVLEAQKSGSVRELMII 516

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 517 TSALSIQ--DPRER 528



 Score = 80.1 bits (196), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ++ + +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 72  NLPVSQKKQDLYNAIRDNQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAA 131

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  +     VGY++RF     E T +  +T+G+LL
Sbjct: 132 RTVANRIADELDTSLGGCVGYKVRFNDQVGENTLVKLMTDGILL 175



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F +
Sbjct: 176  AEIQQDRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSS 235

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 236  HFNNAPIIEVSGRT 249


>gi|291004676|ref|ZP_06562649.1| ATP-dependent helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 1309

 Score =  252 bits (644), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 240/445 (53%), Gaps = 16/445 (3%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 176 AEIQQDRLLRRYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSR 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +F+  A +++V GR YP+++ Y P+V+ D    E ++      I   +D+       GDV
Sbjct: 236 HFDD-APVVEVSGRTYPVEVRYRPLVD-DSADEEDVERDQVQAICDAVDELGAEGP-GDV 292

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           L+F+SG  EI     A Q+ N ++    +LPL++ LS  EQ RVF   P   R+ +++TN
Sbjct: 293 LVFLSGEREIRDTAEALQQQNLRNTE--ILPLYARLSAAEQHRVFQ--PHAGRRIVLATN 348

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G+C 
Sbjct: 349 VAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGICI 408

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+E P    +   V  L
Sbjct: 409 RLYSEQDFESRPEFTDPEILRTNLASVILQMTSLGLGDIASFPFIEPPDRRQVTDGVNLL 468

Query: 609 TQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            + GAID  +     R+TS GR L+ LPVD  L +M++       +   L +AA LS+Q 
Sbjct: 469 HELGAIDPAQKDVHKRLTSTGRKLAQLPVDPRLARMVLEAERNGCVRETLVIAAALSIQD 528

Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIEE 720
           P    A +                D L+ LN + ++L  ++  +     +K CK   +  
Sbjct: 529 PRERPADKQQAAGEKHARFADKESDFLSYLNLW-QYLREQQRELSGNQFRKLCKAEFLNY 587

Query: 721 QRFYEVTKLRSQFKQVLGDSGLITD 745
            R  E   L +Q +Q+    G+  +
Sbjct: 588 LRVREWQDLYAQLRQMTKSMGITPN 612



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 7/135 (5%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+E P   
Sbjct: 400 GRVSEGICIRLYSEQDFESRPEFTDPEILRTNLASVILQMTSLGLGDIASFPFIEPPDRR 459

Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
            +   V  L + GAID  +     R+T+ GR L+ LPVD  L +M++       +   L+
Sbjct: 460 QVTDGVNLLHELGAIDPAQKDVHKRLTSTGRKLAQLPVDPRLARMVLEAERNGCVRETLV 519

Query: 923 LDLALNFGAIDSKER 937
           +  AL+    D +ER
Sbjct: 520 IAAALSIQ--DPRER 532



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 74/119 (62%), Gaps = 4/119 (3%)

Query: 22  KEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ 81
           +++   + +IR  Q  LPV++ +++++  +   +VVI+AG+TG GK+TQIP+  ++ G  
Sbjct: 58  QQRRGAVPEIRYPQE-LPVSRRREDLLAAIRDNQVVIVAGETGSGKTTQIPKMCLELGRG 116

Query: 82  ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
               I  TQPRR+A  ++++RVA E  ++    +GYQ+RF       T +  +T+G+LL
Sbjct: 117 VQGMIGHTQPRRLAARTVAERVAEELGTELGEAIGYQVRFTDRAGSNTLVKLMTDGILL 175



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DF+LG +K LL    ++K+I+ SATI+ E F  
Sbjct: 176  AEIQQDRLLRRYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSR 235

Query: 1174 YFNRIAKDLLSGST 1187
            +F+      +SG T
Sbjct: 236  HFDDAPVVEVSGRT 249


>gi|344943475|ref|ZP_08782762.1| ATP-dependent helicase HrpA [Methylobacter tundripaludum SV96]
 gi|344260762|gb|EGW21034.1| ATP-dependent helicase HrpA [Methylobacter tundripaludum SV96]
          Length = 1315

 Score =  252 bits (644), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 160/467 (34%), Positives = 250/467 (53%), Gaps = 33/467 (7%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E   D +L+ YD +++DE HER L+ DFL+G +K LL    ++K+I+ SATI+ + F T
Sbjct: 173 AESQNDPYLNQYDTIIIDEAHERSLNIDFLIGYMKWLLPKRPDLKLIITSATIDTQRFST 232

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE------------LDRTKSEKLDPGPYI------ 410
           +FN  A II+V GR YP+++ Y PI +            L R   E    G  +      
Sbjct: 233 HFNN-APIIEVSGRTYPVEMRYRPIEQREEEDDQSAGSGLARNAPEGARAGTALDETTDD 291

Query: 411 ---RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLE 467
               IL  +D+ Y R  RGD+LIF++G  EI     + ++++     + +LPL+S LS+ 
Sbjct: 292 LQNAILDAVDELY-RDLRGDILIFLTGEREIRETADSLKKHHPTQ--YEILPLYSKLSVS 348

Query: 468 EQDRVFHYAPEGLR-KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW 526
           EQ+RVF   P+G + + +++TN+AETS+T+ GIR V+D+G  +   Y   +K+  L    
Sbjct: 349 EQERVF--KPKGGKLRIVLATNVAETSLTVPGIRCVIDTGHARISRYSHRSKIQRLPIER 406

Query: 527 ISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGD 586
           IS++SA QR GR GR   G+C RLYS + Y    E++ PEI R ++ +++L ++ + LGD
Sbjct: 407 ISQSSANQRAGRCGRVAEGICIRLYSHDDYLARPEFTEPEIMRTNLSAVILQMISLNLGD 466

Query: 587 VRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMF 646
           +  FPFLE P  + I      L +  A+D   ++T +G+ L+  P D  L +ML+  +  
Sbjct: 467 IEDFPFLEPPEDKMIRDGKTVLHEVNALDKSGKLTEVGKQLAKFPTDPKLARMLIAAAHE 526

Query: 647 HQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDR 706
           H +  V  + + LSVQ P    A +    +           D LT+LN +  +   KK  
Sbjct: 527 HCLTEVAIIVSALSVQDPREKPADKMQQADAKHAAFRHPESDFLTILNIWNTYEEKKKHL 586

Query: 707 VRSK--KWCKRRGIEEQRFYEVTKLRSQFKQVL-GDSGL--ITDIPG 748
             SK  K+C    +   R  E   + +Q  QV+ GD  +   TD PG
Sbjct: 587 SNSKLRKYCTDNFLSYMRMREWFDIHAQIMQVVKGDLKMHPNTDDPG 633



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 67/121 (55%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYS + Y    E++ PEI R ++ +++L ++ + LGD+  FPFLE P  +
Sbjct: 420 GRVAEGICIRLYSHDDYLARPEFTEPEIMRTNLSAVILQMISLNLGDIEDFPFLEPPEDK 479

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
            I      L +  A+D   ++T +G+ L+  P D  L +ML+  +  H +  + ++  AL
Sbjct: 480 MIRDGKTVLHEVNALDKSGKLTEVGKQLAKFPTDPKLARMLIAAAHEHCLTEVAIIVSAL 539

Query: 928 N 928
           +
Sbjct: 540 S 540



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 7/105 (6%)

Query: 38  LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ-----AGFQRIACTQPRRIA 92
           LPV   K +I   +   +VVI+ G+TG GK+TQ+P+  +      AGF  I  TQPRRIA
Sbjct: 70  LPVTGKKDDIAKLIQGNQVVIVCGETGSGKTTQLPKICLSIGRGVAGF--IGHTQPRRIA 127

Query: 93  CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
             +++ R+A E        VGY+IRF      ++ +  +T+G+LL
Sbjct: 128 ARTVADRIAEELGEPMGKSVGYKIRFNDKTHSESLVKLMTDGILL 172



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
            D +L+ YD +++DE HER L+ DFL+G +K LL    ++K+I+ SATI+ + F T+FN  
Sbjct: 178  DPYLNQYDTIIIDEAHERSLNIDFLIGYMKWLLPKRPDLKLIITSATIDTQRFSTHFNNA 237

Query: 1179 AKDLLSGST 1187
                +SG T
Sbjct: 238  PIIEVSGRT 246


>gi|292619478|ref|XP_002663993.1| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 1 [Danio rerio]
          Length = 1210

 Score =  252 bits (644), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 238/435 (54%), Gaps = 25/435 (5%)

Query: 310  EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
            E   D  L  Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  Y
Sbjct: 659  ECLIDPDLGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQY 718

Query: 370  FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
            F   A I  +PGR YP+++ Y    E D      LD    I ++ I   + P    GD+L
Sbjct: 719  FYE-APIFTIPGRTYPVEVLYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 767

Query: 430  IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
            +F++G  EI +      E   KS G      I+LP++S L  E Q R+F  AP G RK +
Sbjct: 768  VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 826

Query: 485  VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
            ++TNIAETS+TIDGI +VVD G VK+  Y+    +  L    IS+A A+QR GRAGRTGP
Sbjct: 827  IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 886

Query: 545  GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
            G CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E + +
Sbjct: 887  GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 946

Query: 604  SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
            ++  L   GA+D +  +T LGR +++ P++  L KML+        + +L++ ++LSVQ+
Sbjct: 947  AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1006

Query: 664  PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
             F     +    +  + +     GD LT+L  Y  W    K+   S  WC    I+ +  
Sbjct: 1007 VFYRPKDKQALADQKKAKFHQPEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1062

Query: 724  YEVTKLRSQFKQVLG 738
                 +R   KQ+LG
Sbjct: 1063 RRAQDIR---KQMLG 1074



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
           M P    EWK     +   K      T + I E + SLP+ + K+++I  V   +++I+ 
Sbjct: 520 MMPNDIPEWKK--HAFGGNKASYGKKTQLSILEQRESLPIYKLKEQLIQAVHDNQILIVI 577

Query: 61  GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
           G+TG GK+TQI QYL +AG+    +I CTQPRR+A +S++KRV+ E        VGY IR
Sbjct: 578 GETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIR 637

Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
           FE     +T I ++T+G+LLR+
Sbjct: 638 FEDCTSPETVIKYMTDGMLLRE 659



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)

Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
           RTGPG CYRLY+E  Y   +   + PEI+R ++ S +LSL  MG+ D+  F F++APP E
Sbjct: 883 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 942

Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
            + +++  L   GA+D +  +T LGR +++ P++  L KML+        + ML +
Sbjct: 943 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 998



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
            D  L  Y +++LDE HER +H D L G++K  +    ++K+I+ SAT++   F  YF
Sbjct: 663  DPDLGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYF 719


>gi|386308340|ref|YP_006004396.1| ATP-dependent helicase hrpA [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|418241530|ref|ZP_12868057.1| ATP-dependent RNA helicase HrpA [Yersinia enterocolitica subsp.
           palearctica PhRBD_Ye1]
 gi|433549520|ref|ZP_20505564.1| ATP-dependent helicase HrpA [Yersinia enterocolitica IP 10393]
 gi|318605786|emb|CBY27284.1| ATP-dependent helicase hrpA [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|351779073|gb|EHB21197.1| ATP-dependent RNA helicase HrpA [Yersinia enterocolitica subsp.
           palearctica PhRBD_Ye1]
 gi|431788655|emb|CCO68604.1| ATP-dependent helicase HrpA [Yersinia enterocolitica IP 10393]
          Length = 1295

 Score =  252 bits (644), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 155/444 (34%), Positives = 248/444 (55%), Gaps = 24/444 (5%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F +
Sbjct: 176 AEIQQDRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSS 235

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
           +FN  A II+V GR YP+++ Y PIV+  D  + ++L       I   +D+   R   GD
Sbjct: 236 HFNN-APIIEVSGRTYPVEVRYRPIVDDADDVERDQLQA-----IFDAVDE-LGRESPGD 288

Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF--HYAPEGLRKCIV 485
           +LIFMSG  EI     A  + N       VLPL++ LS  EQ+RVF  H+     R+ ++
Sbjct: 289 ILIFMSGEREIRDTADALMKQNLPHTE--VLPLYARLSNSEQNRVFQSHHG----RRIVL 342

Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
           +TN+AETS+T+ GI++V+D G  +   Y    K+  L    +S+ASA QRKGR GR   G
Sbjct: 343 ATNVAETSLTVPGIKYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSDG 402

Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
           +C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   NI+  V
Sbjct: 403 ICIRLYSEQDFLSRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGV 462

Query: 606 RSLTQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
           R L + GAI    +  +++T LGR L+ LPVD  L +M++       +  ++ + + LS+
Sbjct: 463 RLLEELGAIQTASNGHQQLTPLGRQLAQLPVDPRLARMVLEAQKSGSVRELMIITSALSI 522

Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGI 718
           Q P      +    +   +       D L  +N + ++L  ++  + S   +K C+   +
Sbjct: 523 QDPRERPMDKQQASDEKHRRFADKDSDFLAFVNLW-DYLKEQQKELSSAQFRKLCRSDFL 581

Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL 742
              R  E   + +Q +QV+ + G+
Sbjct: 582 NYLRVREWQDIYTQLRQVVKELGI 605



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 79/134 (58%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLYSE+ +    E++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 397 GRVSDGICIRLYSEQDFLSRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKR 456

Query: 868 NIESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           NI+  VR L + GAI    +  +++T LGR L+ LPVD  L +M++       +  ++++
Sbjct: 457 NIQDGVRLLEELGAIQTASNGHQQLTPLGRQLAQLPVDPRLARMVLEAQKSGSVRELMII 516

Query: 924 DLALNFGAIDSKER 937
             AL+    D +ER
Sbjct: 517 TSALSIQ--DPRER 528



 Score = 80.1 bits (196), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
           +LPV+Q KQ++ + +   +VVI+AG+TG GK+TQ+P+  ++ G      I  TQPRR+A 
Sbjct: 72  NLPVSQKKQDLYNAIRDNQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAA 131

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  +     VGY++RF     E T +  +T+G+LL
Sbjct: 132 RTVANRIADELDTSLGGCVGYKVRFNDQVGENTLVKLMTDGILL 175



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD L++DE HER L+ DF+LG ++ LL    ++K+I+ SATI+ + F +
Sbjct: 176  AEIQQDRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSS 235

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 236  HFNNAPIIEVSGRT 249


>gi|291617559|ref|YP_003520301.1| HrpA [Pantoea ananatis LMG 20103]
 gi|291152589|gb|ADD77173.1| HrpA [Pantoea ananatis LMG 20103]
          Length = 1278

 Score =  252 bits (644), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 153/441 (34%), Positives = 244/441 (55%), Gaps = 18/441 (4%)

Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
            E+  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 159 AEIQQDRMLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIDPQRFSR 218

Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
           +FN  A +I+V GR YP+++ Y P+VE    ++E +D      I   +D+   R  RGD+
Sbjct: 219 HFNN-APVIEVSGRTYPVEVRYRPVVE----EAEDVDRDQLQAIFDAVDE-LGREGRGDI 272

Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
           LIFMSG  EI     A  + +       VLPL++ LS  EQ+RVF       R+ +++TN
Sbjct: 273 LIFMSGEREIRDTADALMKRDLPHTE--VLPLYARLSNSEQNRVFQ--SHSGRRIVLATN 328

Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
           +AETS+T+ GI++V+D G  +   Y    K+  L    IS+ASA QRKGR GR   G+C 
Sbjct: 329 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 388

Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
           RLY+E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   +I+  VR L
Sbjct: 389 RLYAEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRHIQDGVRLL 448

Query: 609 TQHGAI----DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
            + GA+    D    +T  GR L+ LPVD  L +M++    +  +  V+ +AA LS+Q P
Sbjct: 449 EELGALTLNDDGHYSLTGSGRQLAQLPVDPRLARMVLAAQQYGCVREVMIIAAGLSIQDP 508

Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIEEQ 721
               A +    +   +       D +  +N +  +LG ++  +     ++ CK   +   
Sbjct: 509 RERPADKKQASDEKHRRFADKESDFVAFVNLWN-YLGEQQKALSGNLFRRQCKTDYLNYL 567

Query: 722 RFYEVTKLRSQFKQVLGDSGL 742
           R  E   + +Q +QV+ + G+
Sbjct: 568 RVREWQDIYTQLRQVVRELGI 588



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 6/134 (4%)

Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
            R   G+C RLY+E+ +     ++ PEI R ++ S++L +  +GLGD+  FPF+EAP   
Sbjct: 380 GRVSEGICIRLYAEDDFLSRPAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 439

Query: 868 NIESSVRSLTQHGAI----DSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
           +I+  VR L + GA+    D    +T  GR L+ LPVD  L +M++    +  +  ++++
Sbjct: 440 HIQDGVRLLEELGALTLNDDGHYSLTGSGRQLAQLPVDPRLARMVLAAQQYGCVREVMII 499

Query: 924 DLALNFGAIDSKER 937
              L+    D +ER
Sbjct: 500 AAGLSIQ--DPRER 511



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 37  SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIAC 93
           +LPV+Q +Q I + + + +VVI+AG+TG GK+TQ+P+  +  G      I  TQPRR+A 
Sbjct: 55  NLPVSQKQQAIAEAIREHQVVIVAGETGSGKTTQLPKICLTLGRGITGLIGHTQPRRLAA 114

Query: 94  ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
            +++ R+A E  +     VGY++RF     E T+I  +T+G+LL
Sbjct: 115 RTVANRIADELETSLGGCVGYKVRFNDQVSETTQIKLMTDGILL 158



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
             ++  D  L  YD +++DE HER L+ DFLLG ++ LL    ++K+I+ SATI+ + F  
Sbjct: 159  AEIQQDRMLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIDPQRFSR 218

Query: 1174 YFNRIAKDLLSGST 1187
            +FN      +SG T
Sbjct: 219  HFNNAPVIEVSGRT 232


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.137    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,251,770,617
Number of Sequences: 23463169
Number of extensions: 895320828
Number of successful extensions: 3999624
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8812
Number of HSP's successfully gapped in prelim test: 1128
Number of HSP's that attempted gapping in prelim test: 3876130
Number of HSP's gapped (non-prelim): 81988
length of query: 1417
length of database: 8,064,228,071
effective HSP length: 156
effective length of query: 1261
effective length of database: 8,698,941,003
effective search space: 10969364604783
effective search space used: 10969364604783
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 84 (37.0 bits)