BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3476
(1417 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14147|DHX34_HUMAN Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34
PE=1 SV=2
Length = 1143
Score = 556 bits (1434), Expect = e-157, Method: Compositional matrix adjust.
Identities = 271/499 (54%), Positives = 357/499 (71%), Gaps = 12/499 (2%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
L Y+VL++DE+HERHLH DFLLGV++ LL + ++K+ILMSATINI LF +YF+ A +
Sbjct: 270 LPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSYFSN-APV 328
Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
++VPGRL+PI + Y P E +KSEKLDP P++R+L ID KYP ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDLLVFLSGM 388
Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
+EIS+++ AAQ Y +Q W+VLPLHS LS+ +QD+VF AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448
Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
IDGIRFVVDSGKVKEMSYD AK+ LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508
Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
Y A Y PEIRRV++DSL+L + M +GD R FPF+E PP ++E+++ L GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALD 568
Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
S E +T +G L+ LPVD+ +GKML+ GSMF ++ VL++AA LSVQSPFT A P+C
Sbjct: 569 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQSSPEC 628
Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
AR+ LES+ GDP T+ N + W+ VK +R R S+KWC+RRGIEE R YE+ LR QFK
Sbjct: 629 AAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFK 688
Query: 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 794
++L D GL+ S R + E + L +KR+ E A +RRK+L+
Sbjct: 689 ELLEDHGLLAGAQAAQVG-DSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLRL------ 741
Query: 795 EEEEEEEEGERLESRTGPG 813
+EE++ G E R GP
Sbjct: 742 --QEEQDGGSSDEDRAGPA 758
Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 102/132 (77%)
Query: 8 EWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGK 67
E++ L YLDF QK+ F L K++ + +LP+AQY I+ T+ + +VV++AGDTGCGK
Sbjct: 132 EFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGK 191
Query: 68 STQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTK 127
STQ+PQYL+ AGF +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE R TK
Sbjct: 192 STQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATK 251
Query: 128 IVFITEGLLLRQ 139
IVF+T GLLLRQ
Sbjct: 252 IVFLTVGLLLRQ 263
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 133/266 (50%), Gaps = 47/266 (17%)
Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
S + + +LK++L GLYPQ+A+ D FN+S + +FH + K LHP VF P+VL
Sbjct: 793 SREQLALLKLVLGRGLYPQLAVPDAFNSSRKDSDQIFHTQAKQGAVLHPTCVFAGSPEVL 852
Query: 1250 RISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSA 1309
E + + ++ +SSKHQLL ++SLLET+KP+LVNC+R+PALQ+LLLFS +
Sbjct: 853 HAQELEASNCDGSRD--DKDKMSSKHQLLSFVSLLETNKPYLVNCVRIPALQSLLLFSRS 910
Query: 1310 IHTNSDFTRLVFDSWIEVFVPLQEAKSTADVNQLEHS----------------------- 1346
+ TN D +RLV D W+E LQ A S + + L S
Sbjct: 911 LDTNGDCSRLVADGWLE----LQLADSESAIRLLAASLRLRARWESALDRQLAHQAQQQL 966
Query: 1347 ----------------LTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGAESGVPGSN 1390
L+++L+QF +A+ + YS+RRL +++ MY P
Sbjct: 967 EEEEEDTPVSPKEVATLSKELLQF--TASKIPYSLRRLTGLEVQNMYVGPQTIPATPHLP 1024
Query: 1391 PFVAEFPMVVEETLGGVRVTPYLVYD 1416
+ T GG VT +L Y+
Sbjct: 1025 GLFGSSTLSPHPTKGGYAVTDFLTYN 1050
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 84/120 (70%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
RTGPGVC+RLY+E Y A Y PEIRRV++DSL+L + M +GD R FPF+E PP +
Sbjct: 494 RTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPAS 553
Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
+E+++ L GA+DS E +T +G L+ LPVD+ +GKML+ GSMF ++ +L + AL+
Sbjct: 554 LETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 49/62 (79%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
Q+ + L Y+VL++DE+HERHLH DFLLGV++ LL + ++K+ILMSATINI LF +Y
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSY 322
Query: 1175 FN 1176
F+
Sbjct: 323 FS 324
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
GA+DS E +T +G L+ LPVD+ +GKML+ GSMF ++ +L + AL+ F ++
Sbjct: 565 GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQS 624
Query: 1086 EEEEEAGER-LES 1097
E A R LES
Sbjct: 625 SPECAAARRPLES 637
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 980 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
GA+DS E +T +G L+ LPVD+ +GKML+ GSMF ++ +L + AL+
Sbjct: 565 GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS 613
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
Q+ + L Y++LI+DEVHERHL+ DFLLGV+
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVL 295
>sp|Q9DBV3|DHX34_MOUSE Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34
PE=2 SV=2
Length = 1145
Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust.
Identities = 285/559 (50%), Positives = 382/559 (68%), Gaps = 18/559 (3%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
L Y VL++DE+HERHLH DFLLGV++ LL ++K+ILMSATINI LF +YF+ A +
Sbjct: 272 LPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSH-APV 330
Query: 377 IKVPGRLYPIQLEYHPIVELDRT--KSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
++VPGRL+PI + Y P E D+T KSEKLDP P++R+L ID KYP ERGD+L+F+SG
Sbjct: 331 VQVPGRLFPITVVYQP-QEADQTASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSG 389
Query: 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494
++EI++++ AAQ Y +Q W+VLPLHS LS+ +QD+VF AP G+RKCI+STNIAETS+
Sbjct: 390 MAEITTVLDAAQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSV 449
Query: 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554
TIDGIRFVVDSGKVKEMSYD AK+ LQEFWIS+ASAEQRKGRAGRTGPGVCYRLY+E
Sbjct: 450 TIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAES 509
Query: 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAI 614
Y A Y PEIRRV++D+L+L + M +GD R FPF+E PP ++E+++ L + GA+
Sbjct: 510 DYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASVETAILYLQEQGAL 569
Query: 615 DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPD 674
DS E +T +G L+ LPVD+ +GKML+ GSMF + VL++AA LSVQSPFT A + D
Sbjct: 570 DSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLD 629
Query: 675 CETARKELESNHGDPLTVLNAYKEWLGVKKDRV-RSKKWCKRRGIEEQRFYEVTKLRSQF 733
C TAR+ LES+ GDP T+ N + W+ VK +R S+KWC+RRG+EE R YE+ LR QF
Sbjct: 630 CATARRPLESDQGDPFTLFNVFNAWVQVKSERSGNSRKWCRRRGVEEHRLYEMANLRRQF 689
Query: 734 KQVLGDSGLIT--DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--AD 789
K++L D GL++ + P S S R + E + L +KR+ E +RRK+L+ D
Sbjct: 690 KELLEDHGLLSGAQVVAPGDSYS---RLQQRRERRALHQLKRQHEEGGGRRRKVLRLQED 746
Query: 790 NAYEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVC 849
EE+ + +R +S V ++L + A S ++ R D L L +
Sbjct: 747 GCSSDEEDRKGSTSQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTR---DQLALLKLV 803
Query: 850 MGLGDVRKFPFLEAPPAEN 868
+G G +P L P A N
Sbjct: 804 LGRG---LYPQLAVPDAFN 819
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 105/139 (75%)
Query: 1 MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
+ P E++ L YLDF+QK+ F L K++ + +LP+AQY I+ T+ + +VV++A
Sbjct: 127 LPPERVSEFRRALLHYLDFQQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVA 186
Query: 61 GDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120
GDTGCGKSTQ+PQYL+ AGF +ACTQPRRIACISL+KRV +E+LSQY + VGYQIRFE
Sbjct: 187 GDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFES 246
Query: 121 HRREKTKIVFITEGLLLRQ 139
R TKIVF+T GLLLRQ
Sbjct: 247 TRSAATKIVFLTVGLLLRQ 265
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 134/274 (48%), Gaps = 47/274 (17%)
Query: 1186 STARSHKDVT-----ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFS 1240
+ A S +D+T +LK++L GLYPQ+A+ D FN+ + +FH + K LHP
Sbjct: 784 AAASSAQDLTRDQLALLKLVLGRGLYPQLAVPDAFNSGRKDSDQIFHTQAKQGTVLHPTC 843
Query: 1241 VFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPAL 1300
VF + P+VL + GR+ +S KHQLL ++SLLET+KP+LVNC+R+PAL
Sbjct: 844 VFANSPEVLHTQGQEASGQEGSQD--GRDQMSCKHQLLAFVSLLETNKPYLVNCVRIPAL 901
Query: 1301 QTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEA-----------------------KST 1337
Q+LLLFS +I TN D +RLV D W+E+ + E+
Sbjct: 902 QSLLLFSRSIDTNGDCSRLVADGWLELQLADSESAVRLLATSLRLRAHWESALDRQLARQ 961
Query: 1338 ADVNQLEH---------------SLTRDLVQFMSSATHLAYSIRRLLAADLKTMYRRTGA 1382
A +LE +L+R+L+QFM A + Y +RRL + + +Y
Sbjct: 962 AQRRKLEQEEDVGSPAVSPQEVAALSRELLQFM--AAKVPYRLRRLTGLEAQNLYVGPQT 1019
Query: 1383 ESGVPGSNPFVAEFPMVVEETLGGVRVTPYLVYD 1416
+ P + T GG V+ YL Y+
Sbjct: 1020 ITTAPSLPGLFGNSTLSPHPTKGGYAVSDYLTYN 1053
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 99/157 (63%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
RTGPGVCYRLY+E Y A Y PEIRRV++D+L+L + M +GD R FPF+E PP +
Sbjct: 496 RTGPGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPAS 555
Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
+E+++ L + GA+DS E +T +G L+ LPVD+ +GKML+ GSMF + +L + AL+
Sbjct: 556 VETAILYLQEQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 615
Query: 929 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 965
+ ++ ++L + P++ G ++F+
Sbjct: 616 VQSPFTRSAQSNLDCATARRPLESDQGDPFTLFNVFN 652
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 47/62 (75%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
Q+ + L Y VL++DE+HERHLH DFLLGV++ LL ++K+ILMSATINI LF +Y
Sbjct: 265 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSY 324
Query: 1175 FN 1176
F+
Sbjct: 325 FS 326
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 980 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVT 1039
GA+DS E +T +G L+ LPVD+ +GKML+ GSMF + +L + AL+ + ++ +
Sbjct: 567 GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQS 626
Query: 1040 SLGRFLSDLPVDIPLGKMLVFGSMFH 1065
+L + P++ G ++F+
Sbjct: 627 NLDCATARRPLESDQGDPFTLFNVFN 652
Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
GA+DS E +T +G L+ LPVD+ +GKML+ GSMF + +L + AL+
Sbjct: 567 GALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 615
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
Q+ + L Y +LI+DEVHERHL+ DFLLGV+
Sbjct: 265 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVL 297
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 137 LRQDSGLIT--DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--ADNA 192
L +D GL++ + P S S R + E + L +KR+ E +RRK+L+ D
Sbjct: 692 LLEDHGLLSGAQVVAPGDSYS---RLQQRRERRALHQLKRQHEEGGGRRRKVLRLQEDGC 748
Query: 193 YEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNF--LSSYDILILDEVHERHL 250
EE+ + +R +S+D +V+F+L+H+ +Q+Q A + L+ + +L V R L
Sbjct: 749 SSDEEDRKGSTSQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTRDQLALLKLVLGRGL 808
Query: 251 Y 251
Y
Sbjct: 809 Y 809
>sp|Q80VY9|DHX33_MOUSE Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33
PE=1 SV=1
Length = 698
Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/443 (34%), Positives = 259/443 (58%), Gaps = 34/443 (7%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
E +D+ L Y ++LDE HER +H D L GV+K E+ K+I+MSAT++++
Sbjct: 169 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVD 228
Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
LF YFNR A ++ + GR +PIQ+ Y TK + D Y+ ++S+ I ++
Sbjct: 229 LFSQYFNR-APVLYLEGRQHPIQIFY--------TKQPQQD---YLHAALVSVFQIHQEA 276
Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
P ++ D+L+F++G EI ++ + A+ + +VLPL+++L +Q RVF A
Sbjct: 277 PASQ--DILVFLTGQEEIEAMSKTCRDIARHLPDGCPSMLVLPLYASLPYSQQLRVFQGA 334
Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
P+G RK I+STNIAETSITI GI++VVD+G VK Y+ + + L +SK A QR
Sbjct: 335 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 394
Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
GRAGR G+CYRLY+E+++ + + PEI+R ++ S++L L+ M + +V F F+ P
Sbjct: 395 GRAGREDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVILQLLAMKVPNVLTFDFMSKP 454
Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
++IE+++ L GA++ K+ +T +GR ++ P++ K ++ S FH + +L
Sbjct: 455 SPDHIEAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPRFAKTILLSSKFHCTEEIL 514
Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
++ ++LSV S N R + ++ RK+ S+ GD +T+LN Y+ + + + K WC
Sbjct: 515 TIVSLLSVDSVLYNPPARRDEVQSVRKKFISSEGDHITLLNIYRTFKNIGGN----KDWC 570
Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
K + + V ++R+Q +++
Sbjct: 571 KENFVNSKNMLLVAEVRAQLREI 593
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)
Query: 35 QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
+ SLP+ + + +++ + ++ G+TG GK+TQIPQYL + G R IA TQPRR+
Sbjct: 62 RRSLPIFRARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 121
Query: 92 ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
A ISL+ RV+ E ++ LVGY +RFE E T+I F+T+G+LLR+
Sbjct: 122 AAISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLRE 169
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
R G+CYRLY+E+++ + + PEI+R ++ S++L L+ M + +V F F+ P ++
Sbjct: 399 REDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVILQLLAMKVPNVLTFDFMSKPSPDH 458
Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
IE+++ L GA++ K+ +T +GR ++ P++ K ++ S FH + +L +
Sbjct: 459 IEAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPRFAKTILLSSKFHCTEEILTI 516
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
A++ +E+ E G+ R E + + + + D ++ A +D+ L Y +
Sbjct: 123 AISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLREAISDSLLRKYSCV 182
Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFHTYFNRIAKDLL 1183
+LDE HER +H D L GV+K E +K+I+MSAT++++LF YFNR L
Sbjct: 183 ILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVDLFSQYFNRAPVLYL 242
Query: 1184 SG 1185
G
Sbjct: 243 EG 244
Score = 37.4 bits (85), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 171 AIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGE------RLESMDANEVEFRLKHDPK 224
I R+ + R++ A + +E+ E G+ R E + + + + D
Sbjct: 106 GISRQGIIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGM 165
Query: 225 QVQVA-TDNFLSSYDILILDEVHERHLYGDFLLGVI 259
++ A +D+ L Y +ILDE HER ++ D L GV+
Sbjct: 166 LLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVV 201
>sp|P43329|HRPA_ECOLI ATP-dependent RNA helicase HrpA OS=Escherichia coli (strain K12)
GN=hrpA PE=3 SV=3
Length = 1300
Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)
Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
E+ D L YD +++DE HER L+ DFLLG +K LL ++KII+ SATI+ E F
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239
Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
+FN A II+V GR YP+++ Y PIVE D T+ ++L I +D+ + GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 292
Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
+LIFMSG EI A + N + +LPL++ LS EQ+RVF R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348
Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
N+AETS+T+ GI++V+D G + Y K+ L IS+ASA QRKGR GR G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408
Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
RLYSE+ + E++ PEI R ++ S++L + +GLGD+ FPF+EAP NI+ VR
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468
Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
L + GAI + E ++T LGR LS LPVD L +M++ + + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528
Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
P + + + D L +N + +LG ++ + S ++ C+ +
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587
Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
R E + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
R G+C RLYSE+ + E++ PEI R ++ S++L + +GLGD+ FPF+EAP
Sbjct: 401 GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKR 460
Query: 868 NIESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
NI+ VR L + GAI + E ++T LGR LS LPVD L +M++ + ++
Sbjct: 461 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMI 520
Query: 923 LDLALNFGAIDSKER 937
+ AL+ D +ER
Sbjct: 521 ITSALSIQ--DPRER 533
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 70/105 (66%), Gaps = 3/105 (2%)
Query: 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92
++LPV+Q KQ+I++ + +VVI+AG+TG GK+TQ+P+ ++ G I TQPRR+A
Sbjct: 75 DNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLA 134
Query: 93 CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
+++ R+A E ++ +GY++RF H + T + +T+G+LL
Sbjct: 135 ARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL 179
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%)
Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 1173
++ D L YD +++DE HER L+ DFLLG +K LL ++KII+ SATI+ E F
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239
Query: 1174 YFNRIAKDLLSGST 1187
+FN +SG T
Sbjct: 240 HFNNAPIIEVSGRT 253
Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
++ D L YD +I+DE HER L DFLLG +
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYL 213
>sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1
OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2
Length = 1131
Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 151/434 (34%), Positives = 247/434 (56%), Gaps = 18/434 (4%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D L Y +++DE HER L+ D L G+++ ++ A++K+I+ SAT++ + F +
Sbjct: 545 ECLGDGSLDQYSAIIMDEAHERSLNTDVLFGLLREVIAKRADLKLIVTSATMDADKFADF 604
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F +PGR +P++L +H RT E + ++I + GD+L
Sbjct: 605 FGGNCPTFTIPGRTFPVEL-FHA-----RTPVEDYVDAAVKQAVTI----HLGGMDGDIL 654
Query: 430 IFMSGISEISSIVRAAQEYN---EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
IFM G +I +E +++ VLP++S L + Q ++F AP G+RK IV+
Sbjct: 655 IFMPGQEDIECTCEMIKEKLGELDEAPPLAVLPIYSQLPSDLQAKIFQRAPGGMRKAIVA 714
Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
TNIAETS+T+DGI FV+D G K Y+ M L F +S+ASA QR GRAGRTGPG
Sbjct: 715 TNIAETSLTVDGILFVIDPGFCKMKVYNPRIGMDALSIFPVSQASANQRTGRAGRTGPGQ 774
Query: 547 CYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
CYRLY+E Q+ L + + PEI+R ++ +++L L +G+ D+ KF F++APP +N+ +S+
Sbjct: 775 CYRLYTERQFKDELLKSTVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQDNMLNSM 834
Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
L GA+D+ ++T +GR + + P+D L KML+ + D VL++ ++LSV + F
Sbjct: 835 YQLWTLGALDNTGQLTPMGRKMVEFPLDPTLSKMLIMSAEMGCSDEVLTIVSMLSVPAIF 894
Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYE 725
R+ + + +++ + D LT LN Y +W K S KWC + + +
Sbjct: 895 FRPKGREEEADAKKEKFQVPESDHLTFLNVYIQWRTHKY----SAKWCADNYLHVKALKK 950
Query: 726 VTKLRSQFKQVLGD 739
V ++R+Q K+++ D
Sbjct: 951 VREVRAQLKEIMQD 964
Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 85/138 (61%), Gaps = 16/138 (11%)
Query: 18 DFKQKEKFSTLMK-------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTG 64
++K+ +F++ MK I++ + LPV +Q++++ + + VVII G+TG
Sbjct: 408 NYKESHQFASHMKDNEAVSDFAMEKSIKQQREYLPVFACRQKMMNVIRENNVVIIVGETG 467
Query: 65 CGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKH 121
GK+TQ+ QYL++ GF I CTQPRR+A +S+++RVA E VGY IRFE
Sbjct: 468 SGKTTQLAQYLLEDGFGDSGLIGCTQPRRVAAMSVARRVADEMGVDLGQDVGYAIRFEDC 527
Query: 122 RREKTKIVFITEGLLLRQ 139
EKT I ++T+G+LLR+
Sbjct: 528 TSEKTIIKYMTDGILLRE 545
Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 79/125 (63%), Gaps = 1/125 (0%)
Query: 809 RTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RTGPG CYRLY+E Q+ L + + PEI+R ++ +++L L +G+ D+ KF F++APP +
Sbjct: 769 RTGPGQCYRLYTERQFKDELLKSTVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQD 828
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
N+ +S+ L GA+D+ ++T +GR + + P+D L KML+ + D +L + L
Sbjct: 829 NMLNSMYQLWTLGALDNTGQLTPMGRKMVEFPLDPTLSKMLIMSAEMGCSDEVLTIVSML 888
Query: 928 NFGAI 932
+ AI
Sbjct: 889 SVPAI 893
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
D L Y +++DE HER L+ D L G+++ ++ A++K+I+ SAT++ + F +F
Sbjct: 548 GDGSLDQYSAIIMDEAHERSLNTDVLFGLLREVIAKRADLKLIVTSATMDADKFADFF 605
Score = 35.0 bits (79), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 1029 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML----LLDL-ALNFVHHS 1083
GA+D+ ++T +GR + + P+D L KML+ + D +L +L + A+ F
Sbjct: 840 LGALDNTGQLTPMGRKMVEFPLDPTLSKMLIMSAEMGCSDEVLTIVSMLSVPAIFFRPKG 899
Query: 1084 EEEEEEEAGERLESMDANEVEF-----RLKHDPKQVQVAADNFL 1122
EEE + E+ + +++ + F + + + ADN+L
Sbjct: 900 REEEADAKKEKFQVPESDHLTFLNVYIQWRTHKYSAKWCADNYL 943
>sp|P45018|HRPA_HAEIN ATP-dependent RNA helicase HrpA homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hrpA PE=3
SV=2
Length = 1304
Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 168/494 (34%), Positives = 266/494 (53%), Gaps = 32/494 (6%)
Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL-HSTAEVKIILMSATINIELFH 367
E+ D FL+ Y L++DE HER L+ DF+LG +K LL ++K+I+ SATI++E F
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFS 245
Query: 368 TYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
+FN A II+V GR YP+++ Y P+VE D D IL+ +D+ RGD
Sbjct: 246 KHFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGD 296
Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
+LIFM+G EI A Q+ N K +LPL + LS +EQ+++FH P GL + +++T
Sbjct: 297 ILIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLAT 352
Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
N+AETS+T+ I++V+D G + Y K+ L IS+ASA QRKGR GR G+C
Sbjct: 353 NVAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 412
Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
RLYSEE ++ E++ PEI R ++ S++L + +GL D+ FPF++AP +I+ V+
Sbjct: 413 IRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERHIQDGVKL 472
Query: 608 LTQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
L + GA ++ K +T +GR L+ LPVD L KM++ F + ++ + + LS
Sbjct: 473 LEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALS 532
Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGI 718
+Q P + + + D L LN ++ +K+ ++ ++ C++ +
Sbjct: 533 IQDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFL 592
Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE 778
R E + Q + + + L I A AL G LL I K+AE
Sbjct: 593 NYLRIREWQDIYHQIRLTVREMSL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE- 646
Query: 779 APKRRKMLKADNAY 792
+++ L A NA+
Sbjct: 647 ---KQQYLGARNAH 657
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
R G+C RLYSEE ++ E++ PEI R ++ S++L + +GL D+ FPF++AP +
Sbjct: 406 RVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERH 465
Query: 869 IESSVRSLTQHGAIDS-------KERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
I+ V+ L + GA ++ K +T +GR L+ LPVD L KM++ F + M+
Sbjct: 466 IQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMM 525
Query: 922 LLDLALNFGAIDSKER 937
++ AL+ D +ER
Sbjct: 526 IIVSALSIQ--DPRER 539
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)
Query: 37 SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
SLPV+Q K EI + + +V+++AG+TG GK+TQ+P+ ++ GF I TQPRRIA
Sbjct: 82 SLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141
Query: 94 ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
S++ R+A E ++ LVGY++RF + T+I +T+G+LL
Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILL 185
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 1114 VQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL-HSTAEVKIILMSATINIELFH 1172
++ D FL+ Y L++DE HER L+ DF+LG +K LL ++K+I+ SATI++E F
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFS 245
Query: 1173 TYFNRIAKDLLSGST 1187
+FN +SG T
Sbjct: 246 KHFNNAPIIEVSGRT 260
Score = 40.8 bits (94), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 226 VQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
++ D FL+ Y LI+DE HER L DF+LG +
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYL 219
>sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33
PE=1 SV=2
Length = 707
Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 152/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
E +D+ L Y ++LDE HER +H D L GV+K E+ K+I+MSAT++++
Sbjct: 178 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 237
Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
LF YFN A ++ + GR +PIQ+ Y TK + D Y+ ++S+ I ++
Sbjct: 238 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 285
Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
P ++ D+L+F++G EI ++ + A+ + +VLPL+++L +Q RVF A
Sbjct: 286 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 343
Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
P+G RK I+STNIAETSITI GI++VVD+G VK Y+ + + L +SK A QR
Sbjct: 344 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 403
Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
GRAGR G+CYRLY+E+++ + + PEI+R ++ S++L L+ M + +V F F+ P
Sbjct: 404 GRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 463
Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
++I++++ L GA++ K+ +T +GR ++ P++ K ++ FH + +L
Sbjct: 464 SPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 523
Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
++ ++LSV S N R + + RK+ S+ GD +T+LN Y+ + LG KD
Sbjct: 524 TIVSLLSVDSVLHNPPSRREEVQGVRKKFISSEGDHMTLLNIYRTFKNLGGNKD------ 577
Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
WCK + + V ++R+Q + +
Sbjct: 578 WCKENFVNSKNMTLVAEVRAQLRDI 602
Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 3/108 (2%)
Query: 35 QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRI 91
+ SLP+ Q + +++ + ++ G+TG GK+TQIPQYL + G R IA TQPRR+
Sbjct: 71 RRSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRV 130
Query: 92 ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
A ISL+ RV+ E ++ LVGY +RF+ E T+I F+T+G+LLR+
Sbjct: 131 AAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLRE 178
Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
R G+CYRLY+E+++ + + PEI+R ++ S++L L+ M + +V F F+ P ++
Sbjct: 408 REDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDH 467
Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
I++++ L GA++ K+ +T +GR ++ P++ K ++ FH + +L +
Sbjct: 468 IQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEILTI 525
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-----VKIILMSATINIELFH 1172
+D+ L Y ++LDE HER +H D L GV+K E +K+I+MSAT++++LF
Sbjct: 181 SDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFS 240
Query: 1173 TYFN 1176
YFN
Sbjct: 241 QYFN 244
Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 230 TDNFLSSYDILILDEVHERHLYGDFLLGVI 259
+D+ L Y +ILDE HER ++ D L GV+
Sbjct: 181 SDSLLRKYSCVILDEAHERTIHTDVLFGVV 210
>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1
Length = 1244
Score = 253 bits (647), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D L+ Y +++LDE HER +H D L G++K + ++K+I+ SAT++ F Y
Sbjct: 693 ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 752
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F A I +PGR YP+++ Y E D LD I ++ I + P GD+L
Sbjct: 753 FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 801
Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
+F++G EI + E KS G I+LP++S L E Q R+F AP G RK +
Sbjct: 802 VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 860
Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
++TNIAETS+TIDGI +VVD G VK+ Y+ + L IS+A A+QR GRAGRTGP
Sbjct: 861 IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 920
Query: 545 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
G CYRLY+E Y + + PEI+R ++ S +LSL MG+ D+ F F++APP E + +
Sbjct: 921 GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 980
Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
++ L GA+D + +T LGR +++ P++ L KML+ + +L++ ++LSVQ+
Sbjct: 981 AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1040
Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
F + + + + GD LT+L Y W K+ S WC I+ +
Sbjct: 1041 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1096
Query: 724 YEVTKLRSQFKQVLG 738
+R KQ+LG
Sbjct: 1097 RRAQDIR---KQMLG 1108
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Query: 1 MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
M P EWK + K T M I E + SLP+ + K++++ V +++I+
Sbjct: 554 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 611
Query: 61 GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
G+TG GK+TQI QYL +AG+ +I CTQPRR+A +S++KRV+ E VGY IR
Sbjct: 612 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 671
Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
FE +T I ++T+G+LLR+
Sbjct: 672 FEDCTSPETVIKYMTDGMLLRE 693
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RTGPG CYRLY+E Y + + PEI+R ++ S +LSL MG+ D+ F F++APP E
Sbjct: 917 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 976
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
+ +++ L GA+D + +T LGR +++ P++ L KML+ + ML +
Sbjct: 977 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1032
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
D L+ Y +++LDE HER +H D L G++K + ++K+I+ SAT++ F YF
Sbjct: 697 DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 753
>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1
Length = 1220
Score = 253 bits (647), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D L+ Y +++LDE HER +H D L G++K + ++K+I+ SAT++ F Y
Sbjct: 669 ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 728
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F A I +PGR YP+++ Y E D LD I ++ I + P GD+L
Sbjct: 729 FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 777
Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
+F++G EI + E KS G I+LP++S L E Q R+F AP G RK +
Sbjct: 778 VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 836
Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
++TNIAETS+TIDGI +VVD G VK+ Y+ + L IS+A A+QR GRAGRTGP
Sbjct: 837 IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 896
Query: 545 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
G CYRLY+E Y + + PEI+R ++ S +LSL MG+ D+ F F++APP E + +
Sbjct: 897 GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 956
Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
++ L GA+D + +T LGR +++ P++ L KML+ + +L++ ++LSVQ+
Sbjct: 957 AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1016
Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
F + + + + GD LT+L Y W K+ S WC I+ +
Sbjct: 1017 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1072
Query: 724 YEVTKLRSQFKQVLG 738
+R KQ+LG
Sbjct: 1073 RRAQDIR---KQMLG 1084
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Query: 1 MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIA 60
M P EWK + K T M I E + SLP+ + K++++ V +++I+
Sbjct: 530 MMPNDIPEWKK--HAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVI 587
Query: 61 GDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117
G+TG GK+TQI QYL +AG+ +I CTQPRR+A +S++KRV+ E VGY IR
Sbjct: 588 GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR 647
Query: 118 FEKHRREKTKIVFITEGLLLRQ 139
FE +T I ++T+G+LLR+
Sbjct: 648 FEDCTSPETVIKYMTDGMLLRE 669
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RTGPG CYRLY+E Y + + PEI+R ++ S +LSL MG+ D+ F F++APP E
Sbjct: 893 RTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPME 952
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
+ +++ L GA+D + +T LGR +++ P++ L KML+ + ML +
Sbjct: 953 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI 1008
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
D L+ Y +++LDE HER +H D L G++K + ++K+I+ SAT++ F YF
Sbjct: 673 DPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYF 729
>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8
PE=3 SV=1
Length = 1160
Score = 253 bits (646), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 154/435 (35%), Positives = 241/435 (55%), Gaps = 24/435 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D LS+Y V++LDE HER + D L G++K L E+K+++ SAT+ E F Y
Sbjct: 612 ECLLDPNLSAYSVIILDEAHERTISTDVLFGLLKQALQRRPELKVLITSATLEAEKFSKY 671
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F A++ +PGR +P+ + Y E D LD I ++ I + P GD+L
Sbjct: 672 FMN-AQLFIIPGRTFPVDIRYTKDPEADY-----LD-ASLITVMQIHLSEPP----GDIL 720
Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
+F++G EI + + E KS G I+LP++S L E Q ++F AP G RK +
Sbjct: 721 LFLTGQEEIDAACQILYE-RMKSLGSNVPDLIILPVYSALPSEMQTKIFEPAPPGSRKVV 779
Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
++TNIAETS+TIDGI +V+D G K+ ++ M +L IS+A+A QR GRAGRTGP
Sbjct: 780 IATNIAETSLTIDGIYYVIDPGFSKQKCFNPKNGMDSLVVAPISQAAARQRSGRAGRTGP 839
Query: 545 GVCYRLYSEEQYS--LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
G CYRLY+E + +LA S PEI+R ++ + +L++ MG+ D+ F F++ PP + +
Sbjct: 840 GKCYRLYTESAFKNEMLAS-SIPEIQRTNLGNTVLTMKAMGINDLLNFDFMDPPPVQTLV 898
Query: 603 SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
S++ L GA+D + +T LGR +++ P+D L KML+ D +L++ A+LSVQ
Sbjct: 899 SAMEQLYSLGALDEEGLLTRLGRKMAEFPLDPQLSKMLIASVDLGCSDEILTVVAMLSVQ 958
Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
+ F + + + + GD LT+LN Y+ W K+ S WC ++ +
Sbjct: 959 NVFYRPKEKQALADQKKAKFFQPEGDHLTLLNVYESW----KNSKFSNPWCFENFVQARS 1014
Query: 723 FYEVTKLRSQFKQVL 737
+R Q ++
Sbjct: 1015 LRRAQDVRKQLITIM 1029
Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 87/136 (63%), Gaps = 8/136 (5%)
Query: 8 EWKLLLR-TYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCG 66
EWK + + +++ + + +T I+E + SLP+ ++ + V + +++++ G+TG G
Sbjct: 481 EWKKVTQGSHIQYGK----ATSRSIKEQRESLPIFPLREAFLQAVSEHQLLVVIGETGSG 536
Query: 67 KSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRR 123
K+TQ+ QYL +AG+ +I CTQPRR+A +S+SKRVA E Q VGY IRFE
Sbjct: 537 KTTQMAQYLAEAGYGTRGKIGCTQPRRVAAMSVSKRVAEEFGCQLGQEVGYAIRFEDCTS 596
Query: 124 EKTKIVFITEGLLLRQ 139
+T I F+T+G+LLR+
Sbjct: 597 PETIIKFMTDGILLRE 612
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Query: 809 RTGPGVCYRLYSEEQYS--LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
RTGPG CYRLY+E + +LA S PEI+R ++ + +L++ MG+ D+ F F++ PP
Sbjct: 836 RTGPGKCYRLYTESAFKNEMLAS-SIPEIQRTNLGNTVLTMKAMGINDLLNFDFMDPPPV 894
Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
+ + S++ L GA+D + +T LGR +++ P+D L KML+
Sbjct: 895 QTLVSAMEQLYSLGALDEEGLLTRLGRKMAEFPLDPQLSKMLI 937
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
D LS+Y V++LDE HER + D L G++K L E+K+++ SAT+ E F YF
Sbjct: 616 DPNLSAYSVIILDEAHERTISTDVLFGLLKQALQRRPELKVLITSATLEAEKFSKYFMNA 675
Query: 1179 AKDLLSGST 1187
++ G T
Sbjct: 676 QLFIIPGRT 684
>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15
OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1
Length = 727
Score = 251 bits (640), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 248/431 (57%), Gaps = 20/431 (4%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E +D L+ YDV++LDE HER L D L G+IK +L ++K+I+MSAT+ F Y
Sbjct: 182 ESMSDPTLNKYDVIILDEAHERTLSTDILFGLIKDILKRRKDLKLIVMSATLEAGKFQKY 241
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F A +IKVPGRL+P+++ Y D +S + ++ID + GD+L
Sbjct: 242 FEN-APLIKVPGRLHPVEIFYTEEAAKDYLESA---------VRTVIDI-HTNEGTGDIL 290
Query: 430 IFMSGISEI-SSIVRAAQEYNEKSQGWI-VLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
+F++G EI + + +E E+ + LPL+S+L + +Q ++F E RKCIVST
Sbjct: 291 VFLTGEEEIEDTCAKIQRETRERGLPPMKTLPLYSSLPIYQQSKIFDTCKE--RKCIVST 348
Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
NIAETS+TIDGI FVVD G K+ +Y+ +++ +L ISKASA QR GRAGRT PG C
Sbjct: 349 NIAETSLTIDGIVFVVDPGFSKQKTYNPRSRVESLLVAPISKASANQRAGRAGRTRPGKC 408
Query: 548 YRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
+RLY+E+ + L+ + + PEI R ++ S++L L+ +G+ D+ F F++ P + + ++
Sbjct: 409 FRLYTEKAFKELMIQQTHPEILRSNLASVVLQLLKLGVVDLVHFDFMDPPVPDTLIRALE 468
Query: 607 SLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFT 666
L GA+D + ++T +G +S+ P+D L KML+ + + +L++AA+LS + F
Sbjct: 469 VLHYLGALDDEGQLTEIGSIMSEFPLDPQLSKMLIVSAERSCSNEILTIAAMLSAPNCFM 528
Query: 667 NRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEV 726
+ ++A+K + GD LT+LN Y + K WC + + +
Sbjct: 529 RPKDNRIEADSAKKSFDHFDGDHLTMLNVYHSF----KKNGEDPTWCYDNFLNHRAIKQA 584
Query: 727 TKLRSQFKQVL 737
+RSQ ++L
Sbjct: 585 DSVRSQLARIL 595
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 21 QKEKFST-LMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG 79
+KE FS +I E + LPV + K++ I + + +VVI+ G+TG GK+TQIPQ++V AG
Sbjct: 59 KKETFSKRYYEILEKRKELPVWKQKEDFIKVIKENQVVILVGETGSGKTTQIPQFVVDAG 118
Query: 80 FQR----IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
R + TQPRR+A IS++KRV+ E + VGY IRFE+ +T + ++T+G+
Sbjct: 119 LIRPGKMVGVTQPRRVAAISVAKRVSEEMDFELGEEVGYSIRFEELSSARTFMKYLTDGM 178
Query: 136 LLRQ 139
LLR+
Sbjct: 179 LLRE 182
Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 809 RTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RT PG C+RLY+E+ + L+ + + PEI R ++ S++L L+ +G+ D+ F F++ P +
Sbjct: 402 RTRPGKCFRLYTEKAFKELMIQQTHPEILRSNLASVVLQLLKLGVVDLVHFDFMDPPVPD 461
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGS 912
+ ++ L GA+D + ++T +G +S+ P+D L KML+ +
Sbjct: 462 TLIRALEVLHYLGALDDEGQLTEIGSIMSEFPLDPQLSKMLIVSA 506
Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
+D L+ YDV++LDE HER L D L G+IK +L ++K+I+MSAT+ F YF
Sbjct: 185 SDPTLNKYDVIILDEAHERTLSTDILFGLIKDILKRRKDLKLIVMSATLEAGKFQKYF 242
Score = 37.7 bits (86), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 230 TDNFLSSYDILILDEVHERHLYGDFLLGVI 259
+D L+ YD++ILDE HER L D L G+I
Sbjct: 185 SDPTLNKYDVIILDEAHERTLSTDILFGLI 214
Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 53/241 (21%)
Query: 1018 DTML-LLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFG---SMFHQIDTMLLL 1073
DT++ L++ GA+D + ++T +G +S+ P+D L KML+ S ++I T+ +
Sbjct: 461 DTLIRALEVLHYLGALDDEGQLTEIGSIMSEFPLDPQLSKMLIVSAERSCSNEILTIAAM 520
Query: 1074 DLALNFVHHSEEE--EEEEAGERLESMDAN-----EVEFRLKHDPKQVQVAADNFLSSYD 1126
A N ++ E + A + + D + V K + + DNFL+
Sbjct: 521 LSAPNCFMRPKDNRIEADSAKKSFDHFDGDHLTMLNVYHSFKKNGEDPTWCYDNFLNHRA 580
Query: 1127 VLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGS 1186
+ D + + L K+ L+S +N + Y+ I K
Sbjct: 581 IKQADSVRSQ-------------LARILTRFKLPLVSGDVNSKF---YYENIKK------ 618
Query: 1187 TARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQP 1246
+A+G + QVA ++ K F D+ V HP + T +P
Sbjct: 619 -------------CIAAGFFMQVAKCEK-------KNIYFTLGDEQSVIFHPSTGLTRRP 658
Query: 1247 D 1247
+
Sbjct: 659 E 659
>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP43 PE=1 SV=1
Length = 767
Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 162/455 (35%), Positives = 240/455 (52%), Gaps = 26/455 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D+ LS Y ++LDE HER L D L+G++K ++ ++KII+MSAT++ E F Y
Sbjct: 199 EAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRY 258
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
FN A ++ VPGR YP++L Y P + D S IR + I + E GD+L
Sbjct: 259 FND-APLLAVPGRTYPVELYYTPEFQRDYLDSA-------IRTVLQI---HATEEAGDIL 307
Query: 430 IFMSGISEISSIVR-----AAQEYNEKSQGWI-VLPLHSTLSLEEQDRVFHYAPEGL--- 480
+F++G EI VR Q E+ G + V PL+ +L +Q R+F APE
Sbjct: 308 LFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR 367
Query: 481 --RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
RK ++STNIAETS+TIDGI +VVD G K+ Y+ ++ +L ISKASA+QR GR
Sbjct: 368 PGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGR 427
Query: 539 AGRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 597
AGRT PG C+RLY+EE + L E S PEI R ++ S +L L +G+ D+ F F++ P
Sbjct: 428 AGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPA 487
Query: 598 AENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAA 657
E + ++ L +D + +T LGR S P+D L ML+ F +L++ A
Sbjct: 488 PETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVA 547
Query: 658 VLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRG 717
+LSV + F + A+ GD +T+LN Y + + KWC+
Sbjct: 548 MLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHY 607
Query: 718 IEEQRFYEVTKLRSQFKQVLGDSGL---ITDIPGP 749
+ + +RSQ ++++ L TD P
Sbjct: 608 LNYRSLSAADNIRSQLERLMNRYNLELNTTDYESP 642
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 73/121 (60%), Gaps = 8/121 (6%)
Query: 24 KFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV-----QA 78
K+ ++KIR LPV + E + ++++ G+TG GK+TQIPQ+++
Sbjct: 82 KYVDILKIR---RELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL 138
Query: 79 GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLR 138
++ACTQPRR+A +S+++RVA E + VGY IRFE KT + ++T+G+LLR
Sbjct: 139 ENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLR 198
Query: 139 Q 139
+
Sbjct: 199 E 199
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RT PG C+RLY+EE + L E S PEI R ++ S +L L +G+ D+ F F++ P E
Sbjct: 430 RTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPE 489
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
+ ++ L +D + +T LGR S P+D L ML+ GS Q +L +A+
Sbjct: 490 TMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLI-GSFEFQCSQEILTIVAM 548
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 7/108 (6%)
Query: 1076 ALNFVHHSEEEEEEEAGE------RLESMDANEVEFRLKHDPKQVQVA-ADNFLSSYDVL 1128
A++ EE + + GE R E+ +N+ + D ++ A D+ LS Y +
Sbjct: 153 AMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCI 212
Query: 1129 VLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
+LDE HER L D L+G++K ++ ++KII+MSAT++ E F YFN
Sbjct: 213 ILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260
Score = 33.9 bits (76), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 184 RKMLKADNAYEIEEEEEEEEGE------RLESMDANEVEFRLKHDPKQVQVAT-DNFLSS 236
R++ A + EE + + GE R E+ +N+ + D ++ A D+ LS
Sbjct: 149 RRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSR 208
Query: 237 YDILILDEVHERHLYGDFLLGVI 259
Y +ILDE HER L D L+G++
Sbjct: 209 YSCIILDEAHERTLATDILMGLL 231
>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
Length = 1168
Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/436 (34%), Positives = 236/436 (54%), Gaps = 26/436 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E+ D LS Y V++LDE HER +H D L G++K L+ ++++I+ SAT++ E F Y
Sbjct: 619 EILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRRLDLRLIVTSATLDAEKFSGY 678
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F I +PGR +P+++ Y E D LD I +L I + GD+L
Sbjct: 679 FFN-CNIFTIPGRTFPVEILYTKQPETDY-----LDAA-LITVLQI----HLTEPEGDIL 727
Query: 430 IFMSGISEISSIVRAAQEYNEKSQGW-------IVLPLHSTLSLEEQDRVFHYAPEGLRK 482
+F++G EI S A Q E+ +G I+LP++S L E Q R+F P G RK
Sbjct: 728 VFLTGQEEIDS---ACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPPPPGKRK 784
Query: 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542
+V+TNIAE S+TIDGI +VVD G K+ Y+ + +L IS+ASA+QR GRAGRT
Sbjct: 785 VVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQRAGRAGRT 844
Query: 543 GPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENI 601
GPG CYRLY+E Y + + S PEI+R+++ L++ MG+ D+ F F++ P + +
Sbjct: 845 GPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPPQPQAL 904
Query: 602 ESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
S++ L GA+D + +T LGR +++ P++ PL KML+ D +L++ A++
Sbjct: 905 ISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTMIAMIQT 964
Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQ 721
+ F + + R + GD LT+L Y+ W K + S WC I+ +
Sbjct: 965 GNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAW----KAKNFSGPWCFENFIQSR 1020
Query: 722 RFYEVTKLRSQFKQVL 737
+R Q ++
Sbjct: 1021 SLRRAQDVRKQLLSIM 1036
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 81/124 (65%), Gaps = 7/124 (5%)
Query: 19 FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA 78
F Q+ K S I+E + SLP+ + K+E+I V +V+++ G+TG GK+TQ+ QYL +A
Sbjct: 500 FGQRSKLS----IQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEA 555
Query: 79 GFQ---RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
G+ +I CTQPRR+A +S++KRVA E + VGY IRFE T I ++T+G+
Sbjct: 556 GYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGM 615
Query: 136 LLRQ 139
LLR+
Sbjct: 616 LLRE 619
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
RTGPG CYRLY+E Y + + S PEI+R+++ L++ MG+ D+ F F++ P
Sbjct: 842 GRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPPQP 901
Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
+ + S++ L GA+D + +T LGR +++ P++ PL KML+ D +L +
Sbjct: 902 QALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTMIAM 961
Query: 927 LNFGAI 932
+ G I
Sbjct: 962 IQTGNI 967
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
++ D LS Y V++LDE HER +H D L G++K L+ ++++I+ SAT++ E F Y
Sbjct: 619 EILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRRLDLRLIVTSATLDAEKFSGY 678
Query: 1175 F 1175
F
Sbjct: 679 F 679
Score = 34.7 bits (78), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
++ D LS Y +++LDE HER ++ D L G++
Sbjct: 619 EILIDENLSQYSVIMLDEAHERTIHTDVLFGLL 651
>sp|Q10752|CDC28_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
cdc28 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cdc28 PE=3 SV=2
Length = 1055
Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/420 (34%), Positives = 240/420 (57%), Gaps = 28/420 (6%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
L+SY V+++DE HER LH D L G++K + ++K+++ SATI+ E F YF+ A +
Sbjct: 530 LASYSVIIIDEAHERTLHTDILFGLVKDIARFRPDLKVLISSATIDAEKFSAYFDE-APV 588
Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRI-LSIIDKKYPRTERGDVLIFMSGI 435
VPGR YP+ + Y P E + YI+ ++ I + + GD+L+F++G
Sbjct: 589 FYVPGRRYPVDIYYTPQPEAN-----------YIQAAITTILQIHTTQPAGDILVFLTGQ 637
Query: 436 SEISSIVRAAQEY----NEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAE 491
EI + QE ++ I+ P+++ L E Q ++F P G RK +++TNIAE
Sbjct: 638 DEIELMSENMQELCRILGKRIPEIILCPIYANLPSELQAKIFDPTPPGARKVVLATNIAE 697
Query: 492 TSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLY 551
TSITIDG+ FV+DSG VK+ Y+ M +L S+ASA+QR GRAGR GPG C+RLY
Sbjct: 698 TSITIDGVNFVIDSGFVKQNMYNPRTGMESLVSVPCSRASADQRAGRAGRVGPGKCFRLY 757
Query: 552 SEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQ 610
+ Y+ L ++PEI+R ++ +++L L +G+ ++ F F++APP E + S+ L
Sbjct: 758 TRRTYNNELDMVTSPEIQRTNLTNIVLLLKSLGINNLLDFDFMDAPPPETLMRSLELLYA 817
Query: 611 HGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAF 670
GA++++ +T LGR +++ P D L K L+ S + ++ VLS+ ++L S R
Sbjct: 818 LGALNNRGELTKLGRQMAEFPTDPMLSKSLIASSKYGCVEEVLSIVSMLGEASSLFYRP- 876
Query: 671 RDP--DCETARKELESNHGDPLTVLNAYKEWLGV-------KKDRVRSKKWCKRRGIEEQ 721
+D + + AR GD LT+L+ + EW+ +++ ++ K C+ R + +Q
Sbjct: 877 KDKIMEADKARANFTQPGGDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRDQ 936
Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 77/110 (70%), Gaps = 4/110 (3%)
Query: 34 TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACTQPR 89
++ SLPV QYK +++ + + +V++I +TG GK+TQ+PQ+L +AG+ ++I CTQPR
Sbjct: 414 SRKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKGNKKICCTQPR 473
Query: 90 RIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
R+A +S++ RVA E + VGY IRFE EKT I ++T+G+LLR+
Sbjct: 474 RVAAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLRE 523
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
R GPG C+RLY+ Y+ L ++PEI+R ++ +++L L +G+ ++ F F++APP E
Sbjct: 747 RVGPGKCFRLYTRRTYNNELDMVTSPEIQRTNLTNIVLLLKSLGINNLLDFDFMDAPPPE 806
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
+ S+ L GA++++ +T LGR +++ P D L K L+ S + ++ +L
Sbjct: 807 TLMRSLELLYALGALNNRGELTKLGRQMAEFPTDPMLSKSLIASSKYGCVEEVL 860
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
L+SY V+++DE HER LH D L G++K + ++K+++ SATI+ E F YF+
Sbjct: 530 LASYSVIIIDEAHERTLHTDILFGLVKDIARFRPDLKVLISSATIDAEKFSAYFD 584
Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 27/159 (16%)
Query: 230 TDNFLSSYDILILDEVHERHLYGDFLLGVIS------PPLHC--GGEIVAADYFLSSYDV 281
T+ L+SY ++I+DE HER L+ D L G++ P L + A+ F + +D
Sbjct: 526 TEPDLASYSVIIIDEAHERTLHTDILFGLVKDIARFRPDLKVLISSATIDAEKFSAYFDE 585
Query: 282 LVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV 341
+ + R D ++ T + A N++ + +L +IH GD L+ +
Sbjct: 586 APVFYVPGRRYPVD---------IYYTPQPEA-NYIQAAITTIL-QIHTTQPAGDILVFL 634
Query: 342 IKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVP 380
T + +I LMS + EL RI +II P
Sbjct: 635 -------TGQDEIELMSENMQ-ELCRILGKRIPEIILCP 665
>sp|O45244|DHX16_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4
OS=Caenorhabditis elegans GN=mog-4 PE=1 SV=2
Length = 1008
Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 139/423 (32%), Positives = 241/423 (56%), Gaps = 20/423 (4%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
L+SY V+++DE HER LH D L G++K + ++K+++ SAT++ E F ++F+ A I
Sbjct: 476 LASYSVMMIDEAHERTLHTDILFGLVKDIARFRKDLKLLISSATLDAEKFSSFFDD-API 534
Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
++PGR +P+ + Y E D + I++I+ + GD+L+F++G
Sbjct: 535 FRIPGRRFPVDIYYTQAPEADYVDAA---------IVTIMQIHLTQPLPGDILVFLTGQE 585
Query: 437 EISSIVRAAQEYNE----KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
EI ++ A E ++ K + I LP+++ L + Q ++F P+ RK +++TNIAET
Sbjct: 586 EIETVQEALMERSKALGSKIKELIPLPVYANLPSDLQAKIFEPTPKDARKVVLATNIAET 645
Query: 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
S+TIDGI +V+D G K+ S+D + + L ISKA+A QR GRAGRTGPG C+RLY+
Sbjct: 646 SVTIDGINYVIDPGFSKQNSFDARSGVEHLHVVTISKAAANQRAGRAGRTGPGKCFRLYT 705
Query: 553 EEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQH 611
Y L E PEI+R ++ +++L L +G+ D+ F FL+ PP E + ++ L
Sbjct: 706 AWAYKHELEEQPIPEIQRTNLGNVVLMLKSLGIHDLVHFDFLDPPPQETLVIALEQLYAL 765
Query: 612 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP-FTNRAF 670
GA++ + +T LGR +++ P D + KM++ + + ++++AA+LS + F
Sbjct: 766 GALNHRGELTKLGRRMAEFPCDPCMSKMIIASEKYECSEEIVTIAAMLSCNAAVFYRPKA 825
Query: 671 RDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLR 730
+ ++ARK S GD +T++N Y +W ++ S++WC ++ + +R
Sbjct: 826 QVIHADSARKGFWSPAGDHITLMNVYNKW----QESSFSQRWCVENYVQHRTMKRARDVR 881
Query: 731 SQF 733
Q
Sbjct: 882 DQL 884
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 91/150 (60%), Gaps = 17/150 (11%)
Query: 7 EEWKLLLRTYLDFKQK-------------EKFSTLMKIRETQNSLPVAQYKQEIIDTVLK 53
+E++LLL +DF Q E M I ET+ SLPV ++ I+ V +
Sbjct: 320 QEFELLLDEKVDFIQALQMPGTNEEVVETEAEKKKMSIEETRKSLPVYAFRDAFIEAVKE 379
Query: 54 ERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACTQPRRIACISLSKRVAYETLSQYS 109
+V+II G+TG GK+TQ+PQYL +AGF +RI CTQPRR+A +S++ RVA E +
Sbjct: 380 HQVLIIEGETGSGKTTQLPQYLYEAGFCEGGKRIGCTQPRRVAAMSVAARVADEVGCKLG 439
Query: 110 NLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
VGY IRFE EKT + ++T+G+LLR+
Sbjct: 440 TQVGYSIRFEDCTSEKTVLKYMTDGMLLRE 469
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RTGPG C+RLY+ Y L E PEI+R ++ +++L L +G+ D+ F FL+ PP E
Sbjct: 694 RTGPGKCFRLYTAWAYKHELEEQPIPEIQRTNLGNVVLMLKSLGIHDLVHFDFLDPPPQE 753
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
+ ++ L GA++ + +T LGR +++ P D + KM++ + + ++ + L
Sbjct: 754 TLVIALEQLYALGALNHRGELTKLGRRMAEFPCDPCMSKMIIASEKYECSEEIVTIAAML 813
Query: 928 NFGA 931
+ A
Sbjct: 814 SCNA 817
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 39/55 (70%)
Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
L+SY V+++DE HER LH D L G++K + ++K+++ SAT++ E F ++F+
Sbjct: 476 LASYSVMMIDEAHERTLHTDILFGLVKDIARFRKDLKLLISSATLDAEKFSSFFD 530
>sp|Q92620|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo
sapiens GN=DHX38 PE=1 SV=2
Length = 1227
Score = 247 bits (631), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 147/426 (34%), Positives = 240/426 (56%), Gaps = 21/426 (4%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
L Y +++DE HER L+ D L G+++ ++ +++K+I+ SAT++ E F +F + I
Sbjct: 643 LDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVP-I 701
Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
+PGR +P+ + + +T E + L + P GD+LIFM G
Sbjct: 702 FHIPGRTFPVDILF------SKTPQEDYVEAAVKQSLQVHLSGAP----GDILIFMPGQE 751
Query: 437 EI----SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
+I IV +E E + VLP++S L + Q ++F AP+G+RKCIV+TNIAET
Sbjct: 752 DIEVTSDQIVEHLEEL-ENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAET 810
Query: 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
S+T+DGI FV+DSG K ++ M LQ + IS+A+A QR GRAGRTGPG C+RLY+
Sbjct: 811 SLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYT 870
Query: 553 EEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQH 611
+ Y + L + PEI+R ++ +++L L +G+ D+ +F F++ PP +N+ +S+ L
Sbjct: 871 QSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWIL 930
Query: 612 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFR 671
GA+D+ +TS GR + + P+D L KML+ +L + ++LSV + F R
Sbjct: 931 GALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGR 990
Query: 672 DPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRS 731
+ + + R++ D LT LN Y +W K+ S WC I + +V ++R+
Sbjct: 991 EEESDQIREKFAVPESDHLTYLNVYLQW----KNNNYSTIWCNDHFIHAKAMRKVREVRA 1046
Query: 732 QFKQVL 737
Q K ++
Sbjct: 1047 QLKDIM 1052
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 17/140 (12%)
Query: 17 LDFKQKEKFSTLMK--------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGD 62
+D++ ++KF+ MK I E + LP+ +QE++ + +VI+ G+
Sbjct: 497 VDYRTEQKFADHMKRKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGE 556
Query: 63 TGCGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE 119
TG GK+TQ+ QYL + G+ I CTQPRR+A +S++KRV+ E VGY IRFE
Sbjct: 557 TGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFE 616
Query: 120 KHRREKTKIVFITEGLLLRQ 139
E T I ++T+G+LLR+
Sbjct: 617 DCTSENTLIKYMTDGILLRE 636
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 75/125 (60%), Gaps = 1/125 (0%)
Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RTGPG C+RLY++ Y + L + PEI+R ++ +++L L +G+ D+ +F F++ PP +
Sbjct: 859 RTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPED 918
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
N+ +S+ L GA+D+ +T+ GR + + P+D L KML+ +LL+ L
Sbjct: 919 NMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSML 978
Query: 928 NFGAI 932
+ AI
Sbjct: 979 SVPAI 983
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%)
Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
L Y +++DE HER L+ D L G+++ ++ +++K+I+ SAT++ E F +F +
Sbjct: 643 LDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNV 699
>sp|O42643|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp22 PE=1 SV=1
Length = 1168
Score = 246 bits (629), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 241/433 (55%), Gaps = 20/433 (4%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D LS Y V++LDE HER + D L G++K + ++K+I+ SAT++ E F +Y
Sbjct: 615 ECLVDPLLSKYSVIILDEAHERTVATDVLFGLLKGTVLKRPDLKLIVTSATLDAERFSSY 674
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F + I +PGR YP+++ Y E D LD + ++ I + P GD+L
Sbjct: 675 FYK-CPIFTIPGRSYPVEIMYTKQPEADY-----LDAA-LMTVMQIHLSEGP----GDIL 723
Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
+F++G EI + + ++ + ++LP++S L E Q R+F AP G RK ++
Sbjct: 724 VFLTGQEEIDTSCEILYERSKMLGDSIPELVILPVYSALPSEIQSRIFEPAPPGGRKVVI 783
Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
+TNIAETS+TIDGI +VVD G VK+ +D M +L IS+A A QR GRAGRTGPG
Sbjct: 784 ATNIAETSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRSGRAGRTGPG 843
Query: 546 VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
CYRLY+E Y + + PEI+R ++ +L L MG+ D+ F F++ PPA+ + ++
Sbjct: 844 KCYRLYTESAYRNEMLPSPIPEIQRQNLSHTILMLKAMGINDLLNFDFMDPPPAQTMIAA 903
Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
+++L A+D + +T LGR ++D P++ L K+L+ + +LS+ A+LSV +
Sbjct: 904 LQNLYALSALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELGCSEEMLSIIAMLSVPNI 963
Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
++ + + + R + + D LT+LN Y W K +R S WC I+ +
Sbjct: 964 WSRPREKQQEADRQRAQFANPESDHLTLLNVYTTW---KMNRC-SDNWCYEHYIQARGMR 1019
Query: 725 EVTKLRSQFKQVL 737
+R Q +++
Sbjct: 1020 RAEDVRKQLIRLM 1032
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 77/117 (65%), Gaps = 4/117 (3%)
Query: 27 TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QR 82
T + ++E + LPV + +++ ++ V K +++++ G+TG GK+TQI QYL + G+ +
Sbjct: 499 TTLSMKEQREGLPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAEEGYTSDSKM 558
Query: 83 IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
I CTQPRR+A +S++KRVA E + VGY IRFE T+I ++T+G+L R+
Sbjct: 559 IGCTQPRRVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTSRMTQIKYMTDGMLQRE 615
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 75/130 (57%), Gaps = 1/130 (0%)
Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RTGPG CYRLY+E Y + + PEI+R ++ +L L MG+ D+ F F++ PPA+
Sbjct: 839 RTGPGKCYRLYTESAYRNEMLPSPIPEIQRQNLSHTILMLKAMGINDLLNFDFMDPPPAQ 898
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
+ +++++L A+D + +T LGR ++D P++ L K+L+ + ML + L
Sbjct: 899 TMIAALQNLYALSALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELGCSEEMLSIIAML 958
Query: 928 NFGAIDSKER 937
+ I S+ R
Sbjct: 959 SVPNIWSRPR 968
Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
Q + D LS Y V++LDE HER + D L G++K + ++K+I+ SAT++ E F
Sbjct: 613 QRECLVDPLLSKYSVIILDEAHERTVATDVLFGLLKGTVLKRPDLKLIVTSATLDAERFS 672
Query: 1173 TYF 1175
+YF
Sbjct: 673 SYF 675
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 225 QVQVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
Q + D LS Y ++ILDE HER + D L G++
Sbjct: 613 QRECLVDPLLSKYSVIILDEAHERTVATDVLFGLL 647
>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5
OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1
Length = 1200
Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 155/449 (34%), Positives = 243/449 (54%), Gaps = 22/449 (4%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D LS Y +++LDE HER +H D L G++K E+K+I+ SAT++ F Y
Sbjct: 644 ECLIDPDLSGYSLIMLDEAHERTIHTDVLFGLLKAAARKRPELKLIITSATLDSVKFSEY 703
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F A I +PGR +P+++ Y E D ++ +I ++ I + P GDVL
Sbjct: 704 FLE-APIFTIPGRTFPVEILYTREPESDYLEA------AHITVMQIHLTEPP----GDVL 752
Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
+F++G EI + E KS G I+LP++ L E Q R+F AP G RK +
Sbjct: 753 VFLTGQEEIDTSCEVLYE-RMKSMGPDVPELIILPVYGALPSEMQTRIFDPAPAGKRKVV 811
Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
++TNIAETS+TIDGI +VVD G VK+ Y+ + M +L IS+A+A+QR GRAGRTGP
Sbjct: 812 IATNIAETSLTIDGIFYVVDPGFVKQKIYNPKSGMDSLVVTPISQAAAKQRSGRAGRTGP 871
Query: 545 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
G CYRLY+E + + PEI+R ++ S LL L MG+ ++ F F++APP +++ +
Sbjct: 872 GKCYRLYTERAFRDEMLPTPVPEIQRTNLASTLLQLKAMGINNLIDFDFMDAPPLDSMIT 931
Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
++ +L A+D +T LGR +++ P++ L K+L+ + VL++ A+L+VQ+
Sbjct: 932 ALNTLHTLSALDGDGLLTKLGRRMAEFPLEPSLSKLLIMSVDLGCSEEVLTIVAMLNVQN 991
Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
F + + + + GD LT+L Y W K+ S+ WC I+ +
Sbjct: 992 IFYRPKEKQDHADQKKAKFHQPEGDHLTLLAVYNSW----KNHHFSQPWCFENFIQVRSM 1047
Query: 724 YEVTKLRSQFKQVLGDSGLITDIPGPDAS 752
+R Q ++ L+ G D S
Sbjct: 1048 KRAQDIRKQLLGIMDRHKLLMVSCGRDVS 1076
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 77/116 (66%), Gaps = 3/116 (2%)
Query: 27 TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---I 83
T + + E + SLP+ K+ +++ ++ +++++ G+TG GK+TQ+ QY ++AG R I
Sbjct: 529 TNLSMVEQRESLPIFALKKNLMEAMIDNQILVVVGETGSGKTTQMTQYAIEAGLGRRGKI 588
Query: 84 ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
CTQPRR+A +S++KRVA E + VGY IRFE + T I ++T+G+LLR+
Sbjct: 589 GCTQPRRVAAMSVAKRVAEEYGCKLGTDVGYTIRFEDCTSQDTIIKYMTDGMLLRE 644
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
RTGPG CYRLY+E + + PEI+R ++ S LL L MG+ ++ F F++APP
Sbjct: 867 GRTGPGKCYRLYTERAFRDEMLPTPVPEIQRTNLASTLLQLKAMGINNLIDFDFMDAPPL 926
Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVF 910
+++ +++ +L A+D +T LGR +++ P++ L K+L+
Sbjct: 927 DSMITALNTLHTLSALDGDGLLTKLGRRMAEFPLEPSLSKLLIM 970
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
D LS Y +++LDE HER +H D L G++K E+K+I+ SAT++ F YF
Sbjct: 648 DPDLSGYSLIMLDEAHERTIHTDVLFGLLKAAARKRPELKLIITSATLDSVKFSEYF 704
>sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos
taurus GN=DHX38 PE=2 SV=1
Length = 1227
Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/426 (34%), Positives = 241/426 (56%), Gaps = 21/426 (4%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
L Y +++DE HER L+ D L G+++ ++ +++K+I+ SAT++ E F ++F + I
Sbjct: 643 LDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFASFFGNVP-I 701
Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
+PGR +P+ + + +T E + L + P GD+LIFM G
Sbjct: 702 FHIPGRTFPVDILF------SKTPQEDYVEAAVKQSLQVHLSGAP----GDILIFMPGQE 751
Query: 437 EI----SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
+I IV +E E + VLP++S L + Q ++F AP+G+RKCIV+TNIAET
Sbjct: 752 DIEVTSDQIVEHLEEL-ENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAET 810
Query: 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
S+T+DGI FV+DSG K ++ M LQ + IS+A+A QR GRAGRTGPG C+RLY+
Sbjct: 811 SLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYT 870
Query: 553 EEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQH 611
+ Y + L + PEI+R ++ +++L L +G+ D+ +F F++ PP +N+ +S+ L
Sbjct: 871 QSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWIL 930
Query: 612 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFR 671
GA+D+ +TS GR + + P+D L KML+ +L + ++LSV + F R
Sbjct: 931 GALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGR 990
Query: 672 DPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRS 731
+ + + R++ D L+ LN Y +W K+ S WC I + +V ++R+
Sbjct: 991 EEESDQIREKFAVPESDHLSYLNVYLQW----KNNNYSTIWCNDHFIHAKAMRKVREVRA 1046
Query: 732 QFKQVL 737
Q K ++
Sbjct: 1047 QLKDIM 1052
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 17/140 (12%)
Query: 17 LDFKQKEKFSTLMK--------------IRETQNSLPVAQYKQEIIDTVLKERVVIIAGD 62
+D++ ++KF+ MK I E + LP+ +QE++ + +VI+ G+
Sbjct: 497 VDYRTEQKFADHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGE 556
Query: 63 TGCGKSTQIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE 119
TG GK+TQ+ QYL + G+ I CTQPRR+A +S++KRV+ E VGY IRFE
Sbjct: 557 TGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFE 616
Query: 120 KHRREKTKIVFITEGLLLRQ 139
E T I ++T+G+LLR+
Sbjct: 617 DCTSESTLIKYMTDGILLRE 636
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 75/125 (60%), Gaps = 1/125 (0%)
Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RTGPG C+RLY++ Y + L + PEI+R ++ +++L L +G+ D+ +F F++ PP +
Sbjct: 859 RTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPED 918
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
N+ +S+ L GA+D+ +T+ GR + + P+D L KML+ +LL+ L
Sbjct: 919 NMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSML 978
Query: 928 NFGAI 932
+ AI
Sbjct: 979 SVPAI 983
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 38/57 (66%)
Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
L Y +++DE HER L+ D L G+++ ++ +++K+I+ SAT++ E F ++F +
Sbjct: 643 LDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFASFFGNV 699
>sp|O94536|UCP12_SCHPO Putative ATP-dependent RNA helicase ucp12 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ucp12 PE=3 SV=1
Length = 1327
Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 145/451 (32%), Positives = 249/451 (55%), Gaps = 41/451 (9%)
Query: 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAK 375
FLS+ +V+DE+HER + D LL ++K ++ +K+ILMSAT+N + F YF A
Sbjct: 693 FLSTLSCVVVDEVHERSIENDILLTLLKLVISRIPNLKVILMSATVNSDTFKYYFGN-AG 751
Query: 376 IIKVPGRLYPIQ----LEYHPIVELD---------RTKSEKLDPGPYIRILSIIDKKYPR 422
+ + GR +PI+ ++ P + D + K ++D R++S ID +
Sbjct: 752 HLHIHGRTFPIKDYYIEDFAPKLNEDDDEEDVPRRKKKEYEIDYHLISRLVSSIDAELGS 811
Query: 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRK 482
+ G +L+F+ G+S I+ +R + ++ + VLPLH++L+ EQ R F + RK
Sbjct: 812 SS-GSILVFLPGVSNIARCIREIK--SKDGSKFEVLPLHASLNTSEQRRCFKTYTK--RK 866
Query: 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542
I +TNIAETSITID + V+DSG+VK++ YDV + T +E W S+A+ +QR+GRAGR
Sbjct: 867 IICATNIAETSITIDDVVAVIDSGRVKQIDYDVERDLVTFKETWASRAACQQRRGRAGRV 926
Query: 543 GPGVCYRLYSE--EQYSLLAEYSTPEIRRVSIDSLLLSLV-----------CMGLGDVRK 589
G+CY+LY+ E+ +L + + PE+ R ++ + L++V + G ++K
Sbjct: 927 KKGICYKLYTRGFEEKGMLGQ-TPPEVLRTALSQVCLNVVPLVKRFSSAGNSVNQGSIKK 985
Query: 590 F--PFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 647
F ++ P ++ +++ L Q GA+ E +T LG +L LP+D+ LGK+LVFGS+F
Sbjct: 986 FMNSLIDPPNDATVDLALKKLIQVGALTVSEDLTGLGEYLVSLPIDLKLGKLLVFGSIFG 1045
Query: 648 QIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDR- 706
++ L++ A+LS +SPF D + R + GD L Y WL + + R
Sbjct: 1046 YLEPALTITAILSTKSPF----LGDDEAREIRSKQSQGWGDVLADARVYHNWLEILETRG 1101
Query: 707 -VRSKKWCKRRGIEEQRFYEVTKLRSQFKQV 736
++ +WC+ + ++ + R++ +
Sbjct: 1102 VKKTVQWCEEMHLHYTTLQQIRQNRNELSEA 1132
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 78/124 (62%), Gaps = 10/124 (8%)
Query: 29 MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV-------QAGFQ 81
+K+RE + LP + +++I+D + +VV+I+G+TG GKSTQ+ Q+++ + Q
Sbjct: 569 LKVREREK-LPAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFILDHYLSSGEKDLQ 627
Query: 82 RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLR--Q 139
+ CTQPRRI+ ISL++RVA+E + VGY + EK ++T + F T GLLLR Q
Sbjct: 628 TVVCTQPRRISAISLAERVAFERDTTVGKEVGYSVHGEKSISKETLLEFCTTGLLLRRIQ 687
Query: 140 DSGL 143
GL
Sbjct: 688 QHGL 691
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 74/135 (54%), Gaps = 16/135 (11%)
Query: 809 RTGPGVCYRLYSE--EQYSLLAEYSTPEIRRVSIDSLLLSLV-----------CMGLGDV 855
R G+CY+LY+ E+ +L + + PE+ R ++ + L++V + G +
Sbjct: 925 RVKKGICYKLYTRGFEEKGMLGQ-TPPEVLRTALSQVCLNVVPLVKRFSSAGNSVNQGSI 983
Query: 856 RKF--PFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSM 913
+KF ++ P ++ +++ L Q GA+ E +T LG +L LP+D+ LGK+LVFGS+
Sbjct: 984 KKFMNSLIDPPNDATVDLALKKLIQVGALTVSEDLTGLGEYLVSLPIDLKLGKLLVFGSI 1043
Query: 914 FHQIDTMLLLDLALN 928
F ++ L + L+
Sbjct: 1044 FGYLEPALTITAILS 1058
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 122/294 (41%), Gaps = 42/294 (14%)
Query: 1112 KQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELF 1171
+++Q FLS+ +V+DE+HER + D LL ++K ++ +K+ILMSAT+N + F
Sbjct: 684 RRIQQHGLGFLSTLSCVVVDEVHERSIENDILLTLLKLVISRIPNLKVILMSATVNSDTF 743
Query: 1172 HTYFNRIAKDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDK 1231
YF + G T +K P++ D+ +E + K K
Sbjct: 744 KYYFGNAGHLHIHGRTFP-------IKDYYIEDFAPKLNEDDD-------EEDVPRRKKK 789
Query: 1232 GF-VSLHPFSVFTSQPDV-LRISEDDIVDPPPGLKLPGRNVI------SSKHQLLVYMSL 1283
+ + H S S D L S I+ PG+ R + SK ++L +
Sbjct: 790 EYEIDYHLISRLVSSIDAELGSSSGSILVFLPGVSNIARCIREIKSKDGSKFEVLPLHAS 849
Query: 1284 LETSKPFLVNCLRMPALQTLLLFSSAIHTNSDFTRLVFDSWIEVFVPLQEAKSTADVNQL 1343
L TS+ C + + ++ TN T + D + V + V Q+
Sbjct: 850 LNTSEQ--RRCFKTYTKRKII-----CATNIAETSITIDDVVAVI-------DSGRVKQI 895
Query: 1344 EHSLTRDLVQFMSS-ATHLAYSIRRLLAADLK-----TMYRRTGAESGVPGSNP 1391
++ + RDLV F + A+ A RR A +K +Y R E G+ G P
Sbjct: 896 DYDVERDLVTFKETWASRAACQQRRGRAGRVKKGICYKLYTRGFEEKGMLGQTP 949
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 135/345 (39%), Gaps = 72/345 (20%)
Query: 1023 LDLAL----NFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1078
+DLAL GA+ E +T LG +L LP+D+ LGK+LVFGS+F ++ L + L+
Sbjct: 999 VDLALKKLIQVGALTVSEDLTGLGEYLVSLPIDLKLGKLLVFGSIFGYLEPALTITAILS 1058
Query: 1079 FVHHSEEEEEEEAGERLESMDANEV--EFRLKHDPKQVQVAADNFLSSYDV-LVLDEIHE 1135
++E +S +V + R+ H+ ++ L + V + E
Sbjct: 1059 TKSPFLGDDEAREIRSKQSQGWGDVLADARVYHNWLEI-------LETRGVKKTVQWCEE 1111
Query: 1136 RHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVT 1195
HLH L + + L A +EL K L S +++T
Sbjct: 1112 MHLH--------YTTLQQIRQNRNELSEAAQLLEL-------TTKKLTGNFDWYSTENLT 1156
Query: 1196 ILKVILASGLYPQV------------AIGDEFNTSETVKEALFHCKDKGFVSLHPFS-VF 1242
+L ++A+ L P V + + + F+ ++ + +HP S +F
Sbjct: 1157 VLSTLIAAALSPNVVKCVYPDKKFVASFSGSLEMEQEARLTKFYDQNNQRLFIHPSSTMF 1216
Query: 1243 TSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQT 1302
+ P+ R + + Y +ET+KPFL NC +
Sbjct: 1217 VNSPNASRCT------------------------FVAYEQKVETTKPFLRNCTPINTYGM 1252
Query: 1303 LLLFSSAIHTNSDFTRLVFD------SWIEVFVPLQEAKSTADVN 1341
+LL ++ I + L+ D +W +V + L+ K D +
Sbjct: 1253 ILLGANDILIDPLGKGLILDQAYCIKAWPKVVILLKMLKRCLDAS 1297
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 973 LDLAL----NFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 1028
+DLAL GA+ E +T LG +L LP+D+ LGK+LVFGS+F ++ L + L+
Sbjct: 999 VDLALKKLIQVGALTVSEDLTGLGEYLVSLPIDLKLGKLLVFGSIFGYLEPALTITAILS 1058
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1
Length = 739
Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 242/462 (52%), Gaps = 29/462 (6%)
Query: 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAK 375
L Y VL+LDE HER L D L+G+IK ++ + A++K+++MSAT++ F YF
Sbjct: 194 LLDKYKVLILDEAHERTLATDILMGLIKEIVRNRADIKVVIMSATLDAGKFQRYFED-CP 252
Query: 376 IIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
++ VPGR +P+++ + P E D ++ I ++I GD+L+F++G
Sbjct: 253 LLSVPGRTFPVEIFFTPNAEKDYLEAA---------IRTVIQIHMVEEVEGDILLFLTGQ 303
Query: 436 SEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL------RKCIV 485
EI I R Q + +PL+STL Q R+F AP RKC++
Sbjct: 304 EEIEEACKRIDREIQALGADAGALSCIPLYSTLPPAAQQRIFEPAPPNRPNGAISRKCVI 363
Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
STNIAETS+TIDG+ FV+D G K+ Y+ ++ +L ISKASA QR GRAGRT PG
Sbjct: 364 STNIAETSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVCPISKASAMQRAGRAGRTKPG 423
Query: 546 VCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
C+RLY+E Y S + + + PEI R ++ S++L L +G D+ F F++ P E + +
Sbjct: 424 KCFRLYTETAYGSEMQDQTYPEILRSNLGSVVLQLKKLGTEDLVHFDFMDPPAPETLMRA 483
Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
+ L AI+ +T LG +++ P+D L KML+ + + + +LS+ A+LSV
Sbjct: 484 LELLNYLQAINDDGELTELGSLMAEFPLDPQLAKMLITSTELNCSNEILSITAMLSVPQC 543
Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
+ + + A+ GD LT+LN Y + ++D +WC I +
Sbjct: 544 WVRPNEMRTEADEAKARFAHIDGDHLTLLNVYHSFKQNQED----PQWCYDNFINYRTMK 599
Query: 725 EVTKLRSQFKQVLGDSGL---ITDIPGPDASLSSRERALRHG 763
+R+Q +V+ L TD D L+ R +AL G
Sbjct: 600 TADTVRTQLSRVMDKYNLRRVSTDFKSRDYYLNIR-KALVAG 640
Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 72/120 (60%), Gaps = 11/120 (9%)
Query: 31 IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ-----------AG 79
I E ++ LPV +YK++ ++ + + + + G+TG GK+TQIPQ+ V+
Sbjct: 69 IWEKRSQLPVWEYKEKFMELLRNNQCITLVGETGSGKTTQIPQWAVEFMKQQQQGQPPGQ 128
Query: 80 FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
+ +ACTQPRR+A +S++ RVA E VGY IRFE E+T + + T+G+LLR+
Sbjct: 129 ARLVACTQPRRVAAMSVATRVAEEMDVVLGQEVGYSIRFEDCISERTVLKYCTDGMLLRE 188
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RT PG C+RLY+E Y S + + + PEI R ++ S++L L +G D+ F F++ P E
Sbjct: 419 RTKPGKCFRLYTETAYGSEMQDQTYPEILRSNLGSVVLQLKKLGTEDLVHFDFMDPPAPE 478
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
+ ++ L AI+ +T LG +++ P+D L KML+
Sbjct: 479 TLMRALELLNYLQAINDDGELTELGSLMAEFPLDPQLAKMLI 520
Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 1121 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
L Y VL+LDE HER L D L+G+IK ++ + A++K+++MSAT++ F YF
Sbjct: 194 LLDKYKVLILDEAHERTLATDILMGLIKEIVRNRADIKVVIMSATLDAGKFQRYF 248
>sp|O35286|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Mus musculus GN=Dhx15 PE=2 SV=2
Length = 795
Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 145/439 (33%), Positives = 234/439 (53%), Gaps = 25/439 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D L Y V++LDE HER L D L+GV+K ++ +++K+I+MSAT++ F Y
Sbjct: 244 EAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIY 303
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F+ ++ +PGR +P+++ Y P E D ++ I ++I E GD+L
Sbjct: 304 FDN-CPLLTIPGRTHPVEIFYTPEPERDYLEAA---------IRTVIQIHMCEEEEGDLL 353
Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL----- 480
+F++G EI I R + + ++PL+STL ++Q R+F P
Sbjct: 354 LFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAI 413
Query: 481 -RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRA 539
RK +VSTNIAETS+TIDG+ FV+D G K+ Y+ ++ +L ISKASA+QR GRA
Sbjct: 414 GRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRA 473
Query: 540 GRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
GRT PG C+RLY+E+ Y + + + PEI R ++ S++L L +G+ D+ F F++ P
Sbjct: 474 GRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAP 533
Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
E + ++ L A++ +T LG +++ P+D L KM++ ++ + VLS+ A+
Sbjct: 534 ETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAM 593
Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGI 718
LSV F + A+ GD LT+LN Y + K S +WC I
Sbjct: 594 LSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAF----KQNHESVQWCYDNFI 649
Query: 719 EEQRFYEVTKLRSQFKQVL 737
+ +R Q +++
Sbjct: 650 NYRSLMSADNVRQQLSRIM 668
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Query: 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ-----AGFQR-IACTQPRRI 91
LPV +YK D +++ + ++ G+TG GK+TQIPQ+ V+ G +R +ACTQPRR+
Sbjct: 137 LPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACTQPRRV 196
Query: 92 ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
A +S+++RVA E VGY IRFE KT + ++T+G+LLR+
Sbjct: 197 AAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLRE 244
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RT PG C+RLY+E+ Y + + + PEI R ++ S++L L +G+ D+ F F++ P E
Sbjct: 475 RTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPE 534
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
+ ++ L A++ +T LG +++ P+D L KM++
Sbjct: 535 TLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVI 576
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
D L Y V++LDE HER L D L+GV+K ++ +++K+I+MSAT++ F YF+
Sbjct: 248 DPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNC 307
Query: 1179 AKDLLSGST 1187
+ G T
Sbjct: 308 PLLTIPGRT 316
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 1020 MLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML----LLDL 1075
M L+L A++ +T LG +++ P+D L KM++ ++ + +L +L +
Sbjct: 537 MRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSV 596
Query: 1076 ALNFVHHSE-EEEEEEAGERLESMDAN-----EVEFRLKHDPKQVQVAADNFLSSYDVLV 1129
FV +E ++ +EA R +D + V K + + VQ DNF++ ++
Sbjct: 597 PQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSLMS 656
Query: 1130 LDEIHER 1136
D + ++
Sbjct: 657 ADNVRQQ 663
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
+ D L Y ++ILDE HER L D L+GV+
Sbjct: 244 EAMNDPLLERYGVIILDEAHERTLATDILMGVL 276
>sp|Q5RAZ4|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Pongo abelii GN=DHX15 PE=2 SV=2
Length = 795
Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 145/439 (33%), Positives = 234/439 (53%), Gaps = 25/439 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D L Y V++LDE HER L D L+GV+K ++ +++K+I+MSAT++ F Y
Sbjct: 244 EAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIY 303
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F+ ++ +PGR +P+++ Y P E D ++ I ++I E GD+L
Sbjct: 304 FDN-CPLLTIPGRTHPVEIFYTPEPERDYLEAA---------IRTVIQIHMCEEEEGDLL 353
Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL----- 480
+F++G EI I R + + ++PL+STL ++Q R+F P
Sbjct: 354 LFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAI 413
Query: 481 -RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRA 539
RK +VSTNIAETS+TIDG+ FV+D G K+ Y+ ++ +L ISKASA+QR GRA
Sbjct: 414 GRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRA 473
Query: 540 GRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
GRT PG C+RLY+E+ Y + + + PEI R ++ S++L L +G+ D+ F F++ P
Sbjct: 474 GRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAP 533
Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
E + ++ L A++ +T LG +++ P+D L KM++ ++ + VLS+ A+
Sbjct: 534 ETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAM 593
Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGI 718
LSV F + A+ GD LT+LN Y + K S +WC I
Sbjct: 594 LSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAF----KQNHESVQWCYDNFI 649
Query: 719 EEQRFYEVTKLRSQFKQVL 737
+ +R Q +++
Sbjct: 650 NYRSLMSADNVRQQLSRIM 668
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Query: 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ-----AGFQR-IACTQPRRI 91
LPV +YK D +++ + ++ G+TG GK+TQIPQ+ V+ G +R +ACTQPRR+
Sbjct: 137 LPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACTQPRRV 196
Query: 92 ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
A +S+++RVA E VGY IRFE KT + ++T+G+LLR+
Sbjct: 197 AAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLRE 244
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RT PG C+RLY+E+ Y + + + PEI R ++ S++L L +G+ D+ F F++ P E
Sbjct: 475 RTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPE 534
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
+ ++ L A++ +T LG +++ P+D L KM++
Sbjct: 535 TLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVI 576
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
D L Y V++LDE HER L D L+GV+K ++ +++K+I+MSAT++ F YF+
Sbjct: 248 DPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNC 307
Query: 1179 AKDLLSGST 1187
+ G T
Sbjct: 308 PLLTIPGRT 316
Score = 38.5 bits (88), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 1020 MLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML----LLDL 1075
M L+L A++ +T LG +++ P+D L KM++ ++ + +L +L +
Sbjct: 537 MRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSV 596
Query: 1076 ALNFVHHSE-EEEEEEAGERLESMDAN-----EVEFRLKHDPKQVQVAADNFLSSYDVLV 1129
FV +E ++ +EA R +D + V K + + VQ DNF++ ++
Sbjct: 597 PQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSLMS 656
Query: 1130 LDEIHER 1136
D + ++
Sbjct: 657 ADNVRQQ 663
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
+ D L Y ++ILDE HER L D L+GV+
Sbjct: 244 EAMNDPLLERYGVIILDEAHERTLATDILMGVL 276
>sp|O43143|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Homo sapiens GN=DHX15 PE=1 SV=2
Length = 795
Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 145/439 (33%), Positives = 234/439 (53%), Gaps = 25/439 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D L Y V++LDE HER L D L+GV+K ++ +++K+I+MSAT++ F Y
Sbjct: 244 EAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIY 303
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F+ ++ +PGR +P+++ Y P E D ++ I ++I E GD+L
Sbjct: 304 FDN-CPLLTIPGRTHPVEIFYTPEPERDYLEAA---------IRTVIQIHMCEEEEGDLL 353
Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL----- 480
+F++G EI I R + + ++PL+STL ++Q R+F P
Sbjct: 354 LFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAI 413
Query: 481 -RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRA 539
RK +VSTNIAETS+TIDG+ FV+D G K+ Y+ ++ +L ISKASA+QR GRA
Sbjct: 414 GRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRA 473
Query: 540 GRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
GRT PG C+RLY+E+ Y + + + PEI R ++ S++L L +G+ D+ F F++ P
Sbjct: 474 GRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAP 533
Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
E + ++ L A++ +T LG +++ P+D L KM++ ++ + VLS+ A+
Sbjct: 534 ETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAM 593
Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGI 718
LSV F + A+ GD LT+LN Y + K S +WC I
Sbjct: 594 LSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAF----KQNHESVQWCYDNFI 649
Query: 719 EEQRFYEVTKLRSQFKQVL 737
+ +R Q +++
Sbjct: 650 NYRSLMSADNVRQQLSRIM 668
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Query: 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ-----AGFQR-IACTQPRRI 91
LPV +YK D +++ + ++ G+TG GK+TQIPQ+ V+ G +R +ACTQPRR+
Sbjct: 137 LPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACTQPRRV 196
Query: 92 ACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
A +S+++RVA E VGY IRFE KT + ++T+G+LLR+
Sbjct: 197 AAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLRE 244
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RT PG C+RLY+E+ Y + + + PEI R ++ S++L L +G+ D+ F F++ P E
Sbjct: 475 RTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPE 534
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
+ ++ L A++ +T LG +++ P+D L KM++
Sbjct: 535 TLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVI 576
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
D L Y V++LDE HER L D L+GV+K ++ +++K+I+MSAT++ F YF+
Sbjct: 248 DPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNC 307
Query: 1179 AKDLLSGST 1187
+ G T
Sbjct: 308 PLLTIPGRT 316
Score = 38.5 bits (88), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 1020 MLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML----LLDL 1075
M L+L A++ +T LG +++ P+D L KM++ ++ + +L +L +
Sbjct: 537 MRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSV 596
Query: 1076 ALNFVHHSE-EEEEEEAGERLESMDAN-----EVEFRLKHDPKQVQVAADNFLSSYDVLV 1129
FV +E ++ +EA R +D + V K + + VQ DNF++ ++
Sbjct: 597 PQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSLMS 656
Query: 1130 LDEIHER 1136
D + ++
Sbjct: 657 ADNVRQQ 663
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
+ D L Y ++ILDE HER L D L+GV+
Sbjct: 244 EAMNDPLLERYGVIILDEAHERTLATDILMGVL 276
>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1
Length = 729
Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 150/440 (34%), Positives = 236/440 (53%), Gaps = 27/440 (6%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E AD L Y V++LDE HER L D L G++K +L + ++K+++MSAT+ E F Y
Sbjct: 175 EAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEY 234
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F+ A ++KVPGRL+P+++ Y E D ++ IR + I P GD+L
Sbjct: 235 FSG-APLMKVPGRLHPVEIFYTQEPERDYLEAA-------IRTVVQIHMCEPP---GDIL 283
Query: 430 IFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL----- 480
+F++G EI R + ++ V+PL+STL Q ++F AP L
Sbjct: 284 VFLTGEEEIEDACRKINKEVSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGP 343
Query: 481 --RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538
RK +VSTNIAETS+TIDGI +V+D G K+ Y+ ++ +L ISKASA QR GR
Sbjct: 344 AGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGR 403
Query: 539 AGRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 597
AGRT PG C+RLY+E+ ++ L + PEI R ++ + +L+L +G+ D+ F F++ P
Sbjct: 404 AGRTRPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPA 463
Query: 598 AENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAA 657
E + ++ L GA+D + +T G +S+ P+D + KML+ F+ + +LS++A
Sbjct: 464 PETLMRALEVLNYLGALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSA 523
Query: 658 VLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRG 717
+LSV + F + A+ GD LT+LN Y + K WC
Sbjct: 524 MLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAY----KQNNEDPNWCFENF 579
Query: 718 IEEQRFYEVTKLRSQFKQVL 737
+ + +R Q +++
Sbjct: 580 VNNRAMKSADNVRQQLVRIM 599
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 9/119 (7%)
Query: 30 KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR------- 82
+I E + LPV K + ++T+ + +I+ G+TG GK+TQIPQ+++ A
Sbjct: 57 EILEKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRK 116
Query: 83 --IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
+ CTQPRR+A +S+S+RVA E VGY IRFE +T + ++T+G+LLR+
Sbjct: 117 WLVGCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLRE 175
Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RT PG C+RLY+E+ ++ L + PEI R ++ + +L+L +G+ D+ F F++ P E
Sbjct: 406 RTRPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPE 465
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
+ ++ L GA+D + +T G +S+ P+D + KML+ F+ + +L
Sbjct: 466 TLMRALEVLNYLGALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEIL 519
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
+ AD L Y V++LDE HER L D L G++K +L + ++K+++MSAT+ E F Y
Sbjct: 175 EAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEY 234
Query: 1175 FN 1176
F+
Sbjct: 235 FS 236
Score = 37.4 bits (85), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 98/238 (41%), Gaps = 53/238 (22%)
Query: 1027 LNF-GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML----LLDLALNFVH 1081
LN+ GA+D + +T G +S+ P+D + KML+ F+ + +L +L + FV
Sbjct: 474 LNYLGALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVR 533
Query: 1082 HSE-EEEEEEAGERLESMDAN-----EVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHE 1135
E ++ +EA R +D + V K + + +NF+++ + D + +
Sbjct: 534 PREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPNWCFENFVNNRAMKSADNVRQ 593
Query: 1136 RHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVT 1195
+++ + + N+++ T FN ++D V
Sbjct: 594 ----------------------QLVRIMSRFNLKMCSTDFN--SRDYY----------VN 619
Query: 1196 ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISE 1253
I K +LA G + QVA + TV KD V LHP + +P+ + +E
Sbjct: 620 IRKAMLA-GYFMQVAHLERTGHYLTV-------KDNQVVHLHPSNCLDHKPEWVIYNE 669
>sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Sus scrofa GN=DHX16 PE=3 SV=1
Length = 1045
Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 235/431 (54%), Gaps = 29/431 (6%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
L+SY V+++DE HER LH D L G+IK + E+K+++ SAT++ F T+F+ A +
Sbjct: 515 LASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATLDTARFSTFFDD-APV 573
Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
++PGR +P+ + Y E D ++ + +L I + P GD+L+F++G
Sbjct: 574 FRIPGRRFPVDIFYTKAPEADYLEA------CVVSVLQIHVTQPP----GDILVFLTGQE 623
Query: 437 EISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
EI + Q+ K + +VLP+++ L + Q R+F P G RK +V+TNIAET
Sbjct: 624 EIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAET 683
Query: 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
S+TI+GI +V+D G K+ SY+ M +L SKASA QR GRAGR G C+RLY+
Sbjct: 684 SLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYT 743
Query: 553 EEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQH 611
Y L E + PEI+R S+ +++L L +G+ D+ F FL+ PP E + ++ L
Sbjct: 744 AWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYAL 803
Query: 612 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFR 671
GA++ +T+ GR +++LPVD L KM++ + + +L++AA+LSV N F
Sbjct: 804 GALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSV----NNSIFY 859
Query: 672 DPD-----CETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEV 726
P + AR GD L +LN Y +W + S +WC ++ +
Sbjct: 860 RPKDKVVHADNARVNFFLPGGDHLVLLNVYTQW----AESGYSSQWCYENFVQFRSMRRA 915
Query: 727 TKLRSQFKQVL 737
+R Q + +L
Sbjct: 916 RDVREQLEGLL 926
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 78/113 (69%), Gaps = 4/113 (3%)
Query: 31 IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACT 86
I+ + SLPV +++E++ V +++II G+TG GK+TQIPQYL + G+ +IACT
Sbjct: 396 IQAVRRSLPVFPFREELLAAVANHQILIIEGETGSGKTTQIPQYLFEEGYTQKGMKIACT 455
Query: 87 QPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
QPRR+A +S++ RVA E + N VGY IRFE E+T + ++T+G+LLR+
Sbjct: 456 QPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLRE 508
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
R G C+RLY+ Y L E + PEI+R S+ +++L L +G+ D+ F FL+ PP E
Sbjct: 732 RVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYE 791
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
+ ++ L GA++ +TT GR +++LPVD L KM++ + + +L + L
Sbjct: 792 TLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAML 851
Query: 928 N 928
+
Sbjct: 852 S 852
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
L+SY V+++DE HER LH D L G+IK + E+K+++ SAT++ F T+F+
Sbjct: 515 LASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATLDTARFSTFFD 569
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Pan troglodytes GN=DHX16 PE=3 SV=1
Length = 1044
Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 235/431 (54%), Gaps = 29/431 (6%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
L+SY V+++DE HER LH D L G+IK + E+K+++ SAT++ F T+F+ A +
Sbjct: 514 LASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDD-APV 572
Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
++PGR +P+ + Y E D ++ + +L I + P GD+L+F++G
Sbjct: 573 FRIPGRRFPVDIFYTKAPEADYLEA------CVVSVLQIHVTQPP----GDILVFLTGQE 622
Query: 437 EISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
EI + Q+ K + +VLP+++ L + Q R+F P G RK +V+TNIAET
Sbjct: 623 EIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAET 682
Query: 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
S+TI+GI +V+D G K+ SY+ M +L SKASA QR GRAGR G C+RLY+
Sbjct: 683 SLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYT 742
Query: 553 EEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQH 611
Y L E + PEI+R S+ +++L L +G+ D+ F FL+ PP E + ++ L
Sbjct: 743 AWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYAL 802
Query: 612 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFR 671
GA++ +T+ GR +++LPVD L KM++ + + +L++AA+LSV N F
Sbjct: 803 GALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSV----NNSIFY 858
Query: 672 DPD-----CETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEV 726
P + AR GD L +LN Y +W + S +WC ++ +
Sbjct: 859 RPKDKVVHADNARVNFFLPGGDHLVLLNVYTQW----AESGYSSQWCYENFVQFRSMRRA 914
Query: 727 TKLRSQFKQVL 737
+R Q + +L
Sbjct: 915 RDVREQLEGLL 925
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 78/113 (69%), Gaps = 4/113 (3%)
Query: 31 IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACT 86
I+ + SLPV +++E++ + +V+II G+TG GK+TQIPQYL + G+ +IACT
Sbjct: 395 IQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACT 454
Query: 87 QPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
QPRR+A +S++ RVA E + N VGY IRFE E+T + ++T+G+LLR+
Sbjct: 455 QPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLRE 507
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
R G C+RLY+ Y L E + PEI+R S+ +++L L +G+ D+ F FL+ PP E
Sbjct: 731 RVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYE 790
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
+ ++ L GA++ +TT GR +++LPVD L KM++ + + +L + L
Sbjct: 791 TLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAML 850
Query: 928 N 928
+
Sbjct: 851 S 851
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
L+SY V+++DE HER LH D L G+IK + E+K+++ SAT++ F T+F+
Sbjct: 514 LASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFD 568
>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Homo sapiens GN=DHX16 PE=1 SV=2
Length = 1041
Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 235/431 (54%), Gaps = 29/431 (6%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
L+SY V+++DE HER LH D L G+IK + E+K+++ SAT++ F T+F+ A +
Sbjct: 511 LASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDD-APV 569
Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
++PGR +P+ + Y E D ++ + +L I + P GD+L+F++G
Sbjct: 570 FRIPGRRFPVDIFYTKAPEADYLEA------CVVSVLQIHVTQPP----GDILVFLTGQE 619
Query: 437 EISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
EI + Q+ K + +VLP+++ L + Q R+F P G RK +V+TNIAET
Sbjct: 620 EIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAET 679
Query: 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
S+TI+GI +V+D G K+ SY+ M +L SKASA QR GRAGR G C+RLY+
Sbjct: 680 SLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYT 739
Query: 553 EEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQH 611
Y L E + PEI+R S+ +++L L +G+ D+ F FL+ PP E + ++ L
Sbjct: 740 AWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYAL 799
Query: 612 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFR 671
GA++ +T+ GR +++LPVD L KM++ + + +L++AA+LSV N F
Sbjct: 800 GALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSV----NNSIFY 855
Query: 672 DPD-----CETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEV 726
P + AR GD L +LN Y +W + S +WC ++ +
Sbjct: 856 RPKDKVVHADNARVNFFLPGGDHLVLLNVYTQW----AESGYSSQWCYENFVQFRSMRRA 911
Query: 727 TKLRSQFKQVL 737
+R Q + +L
Sbjct: 912 RDVREQLEGLL 922
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 78/113 (69%), Gaps = 4/113 (3%)
Query: 31 IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACT 86
I+ + SLPV +++E++ + +V+II G+TG GK+TQIPQYL + G+ +IACT
Sbjct: 392 IQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACT 451
Query: 87 QPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
QPRR+A +S++ RVA E + N VGY IRFE E+T + ++T+G+LLR+
Sbjct: 452 QPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLRE 504
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
R G C+RLY+ Y L E + PEI+R S+ +++L L +G+ D+ F FL+ PP E
Sbjct: 728 RVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYE 787
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
+ ++ L GA++ +TT GR +++LPVD L KM++ + + +L + L
Sbjct: 788 TLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAML 847
Query: 928 N 928
+
Sbjct: 848 S 848
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
L+SY V+++DE HER LH D L G+IK + E+K+++ SAT++ F T+F+
Sbjct: 511 LASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFD 565
>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp43 PE=3 SV=1
Length = 735
Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 154/441 (34%), Positives = 234/441 (53%), Gaps = 29/441 (6%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D+ LS Y ++LDE HER L D L+G++K L ++KII+MSAT++ + F Y
Sbjct: 181 EAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLATRRPDLKIIVMSATLDAKKFQKY 240
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR-ILSIIDKKYPRTERGDV 428
F A ++ VPGR YP+++ Y E D ++ +R +L I ++ P GD+
Sbjct: 241 FFD-APLLAVPGRTYPVEIYYTQEPERDYLEAA-------LRTVLQIHVEEGP----GDI 288
Query: 429 LIFMSGISEISSIVR-----AAQEYNEKSQGWI-VLPLHSTLSLEEQDRVFHYAPEGL-- 480
L+F++G EI R A E + G + V PL+ +L +Q R+F PE
Sbjct: 289 LVFLTGEEEIEDACRKITLEADDLVREGAAGPLKVYPLYGSLPPNQQQRIFEPTPEDTKS 348
Query: 481 ---RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKG 537
RK ++STNIAETS+TIDGI +VVD G K+ Y+ ++ +L ISKASA+QR G
Sbjct: 349 GYGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAG 408
Query: 538 RAGRTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
RAGRT PG C+RLY+EE + L E + PEI R ++ S +L L +G+ D+ F +++ P
Sbjct: 409 RAGRTRPGKCFRLYTEEAFRKELIEQTYPEILRSNLSSTVLELKKLGIDDLVHFDYMDPP 468
Query: 597 PAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLA 656
E + ++ L +D +T LGR S+ P+D L ML+ F+ + VLSL
Sbjct: 469 APETMMRALEELNYLNCLDDNGDLTPLGRKASEFPLDPNLAVMLIRSPEFYCSNEVLSLT 528
Query: 657 AVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRR 716
A+LSV + F + R++ GD LT+LN Y + K + WC
Sbjct: 529 ALLSVPNVFVRPNSARKLADEMRQQFTHPDGDHLTLLNVYHAY----KSGEGTADWCWNH 584
Query: 717 GIEEQRFYEVTKLRSQFKQVL 737
+ + +R Q ++ +
Sbjct: 585 FLSHRALISADNVRKQLRRTM 605
Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
Query: 19 FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQY---- 74
F K KI ET+ LPV Q ++E + + ++++ G+TG GK+TQIPQ+
Sbjct: 56 FNDKPFSQNYFKILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYD 115
Query: 75 -LVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITE 133
L +IACTQPRR+A +S++KRVA E VGY IRFE T + ++T+
Sbjct: 116 ELPHLTNTQIACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLKYMTD 175
Query: 134 GLLLRQ 139
G+LLR+
Sbjct: 176 GMLLRE 181
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 809 RTGPGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RT PG C+RLY+EE + L E + PEI R ++ S +L L +G+ D+ F +++ P E
Sbjct: 412 RTRPGKCFRLYTEEAFRKELIEQTYPEILRSNLSSTVLELKKLGIDDLVHFDYMDPPAPE 471
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
+ ++ L +D +T LGR S+ P+D L ML+ F+ + +L L
Sbjct: 472 TMMRALEELNYLNCLDDNGDLTPLGRKASEFPLDPNLAVMLIRSPEFYCSNEVLSL 527
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
+ D+ LS Y ++LDE HER L D L+G++K L ++KII+MSAT++ + F Y
Sbjct: 181 EAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLATRRPDLKIIVMSATLDAKKFQKY 240
Query: 1175 F 1175
F
Sbjct: 241 F 241
Score = 37.4 bits (85), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
+ TD+ LS Y +ILDE HER L D L+G++
Sbjct: 181 EAMTDHMLSRYSCIILDEAHERTLATDILMGLM 213
>sp|O17438|DHX15_STRPU Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
(Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2
SV=1
Length = 455
Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/439 (32%), Positives = 233/439 (53%), Gaps = 25/439 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D L Y V++LDE HER + D L+G++K + +++K+++MSAT++ F Y
Sbjct: 12 EGMTDPLLERYGVILLDEAHERTVATDILMGLLKEVEKQRSDLKLVVMSATLDAGKFQHY 71
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F+ A ++ VPGR +P+++ Y P E D ++ I +++ GDVL
Sbjct: 72 FDN-APLMTVPGRTHPVEIFYTPEPERDYLEAA---------IRTVVQIHMCEEVEGDVL 121
Query: 430 IFMSGISEISS----IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL----- 480
+F++G EI I R + +PL+STL Q R+F +AP
Sbjct: 122 LFLTGQEEIEEACKRIKREVDNLGPEVGDLKTIPLYSTLPPAMQQRIFEHAPPNKANGAI 181
Query: 481 -RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRA 539
RK +VSTNIAETS+TIDG+ FV+D G K+ Y+ ++ +L ISKASA+QR GRA
Sbjct: 182 GRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRVGRA 241
Query: 540 GRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 598
GRT PG C+RLY+E+ Y S + + + PEI R ++ +++L L +G+ D+ F F++ P
Sbjct: 242 GRTRPGKCFRLYTEKAYDSEMQDNTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAP 301
Query: 599 ENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658
E + ++ L GA+D +T LG +++ P+D L KM++ + + + +LS+ A+
Sbjct: 302 ETLMRALELLNYLGALDDSGDLTRLGSMMAEFPLDPQLAKMVIASTDYSCSNEILSVTAM 361
Query: 659 LSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGI 718
LSV F + A+ GD LT+LN Y + K +WC I
Sbjct: 362 LSVPQCFLRPNEAKKLADEAKMRFAHIDGDHLTLLNVYHAF----KQNNEDPQWCYDNFI 417
Query: 719 EEQRFYEVTKLRSQFKQVL 737
+ + +R Q +++
Sbjct: 418 QYRSLKSADSVRQQLARIM 436
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 808 SRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
RT PG C+RLY+E+ Y S + + + PEI R ++ +++L L +G+ D+ F F++ P
Sbjct: 242 GRTRPGKCFRLYTEKAYDSEMQDNTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAP 301
Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
E + ++ L GA+D +T LG +++ P+D L KM++
Sbjct: 302 ETLMRALELLNYLGALDDSGDLTRLGSMMAEFPLDPQLAKMVI 344
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
D L Y V++LDE HER + D L+G++K + +++K+++MSAT++ F YF+
Sbjct: 16 DPLLERYGVILLDEAHERTVATDILMGLLKEVEKQRSDLKLVVMSATLDAGKFQHYFDNA 75
Query: 1179 AKDLLSGST 1187
+ G T
Sbjct: 76 PLMTVPGRT 84
Score = 34.7 bits (78), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Query: 1020 MLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML----LLDL 1075
M L+L GA+D +T LG +++ P+D L KM++ + + + +L +L +
Sbjct: 305 MRALELLNYLGALDDSGDLTRLGSMMAEFPLDPQLAKMVIASTDYSCSNEILSVTAMLSV 364
Query: 1076 ALNFVHHSEEEE-EEEAGERLESMDAN-----EVEFRLKHDPKQVQVAADNFLSSYDVLV 1129
F+ +E ++ +EA R +D + V K + + Q DNF+ +
Sbjct: 365 PQCFLRPNEAKKLADEAKMRFAHIDGDHLTLLNVYHAFKQNNEDPQWCYDNFIQYRSLKS 424
Query: 1130 LDEIHER 1136
D + ++
Sbjct: 425 ADSVRQQ 431
>sp|P24384|PRP22_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP22 PE=1 SV=1
Length = 1145
Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/438 (33%), Positives = 236/438 (53%), Gaps = 20/438 (4%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D +S Y V++LDE HER + D L ++K E+K+I+ SAT+N F Y
Sbjct: 587 EALLDPEMSKYSVIMLDEAHERTVATDVLFALLKKAAIKRPELKVIVTSATLNSAKFSEY 646
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F II +PG+ +P+++ Y ++D ++ LD ++ I + P GD+L
Sbjct: 647 FLN-CPIINIPGKTFPVEVLYSQTPQMDYIEA-ALDC-----VIDIHINEGP----GDIL 695
Query: 430 IFMSGISEISSIVR----AAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
+F++G EI S + + ++LP++S L E Q ++F P+G RK +
Sbjct: 696 VFLTGQEEIDSCCEILYDRVKTLGDSIGELLILPVYSALPSEIQSKIFEPTPKGSRKVVF 755
Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
+TNIAETSITIDGI +VVD G K Y+ A + L IS+A A QRKGRAGRTGPG
Sbjct: 756 ATNIAETSITIDGIYYVVDPGFAKINIYNARAGIEQLIVSPISQAQANQRKGRAGRTGPG 815
Query: 546 VCYRLYSEEQ-YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
CYRLY+E Y+ + E + PEI+R ++ +L L MG+ D+ KF F++ PP + ++
Sbjct: 816 KCYRLYTESAFYNEMLENTVPEIQRQNLSHTILMLKAMGINDLLKFDFMDPPPKNLMLNA 875
Query: 605 VRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
+ L ++D + ++T+LG+ +S P+D L + L+ D ++++ ++LSVQ+
Sbjct: 876 LTELYHLQSLDDEGKLTNLGKEMSLFPMDPTLSRSLLSSVDNQCSDEIVTIISMLSVQNV 935
Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724
F R + ++ + + +GD LT+LN Y W S+++CK + +
Sbjct: 936 FYRPKDRQLEADSKKAKFHHPYGDHLTLLNVYTRWQQAN----YSEQYCKTNFLHFRHLK 991
Query: 725 EVTKLRSQFKQVLGDSGL 742
++SQ + GL
Sbjct: 992 RARDVKSQISMIFKKIGL 1009
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Query: 27 TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---I 83
T + I + +LPV + E+I V + ++I G+TG GK+TQI QYL + GF I
Sbjct: 472 TSLPISAQRQTLPVYAMRSELIQAVRDNQFLVIVGETGSGKTTQITQYLDEEGFSNYGMI 531
Query: 84 ACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
CTQPRR+A +S++KRVA E + + VGY IRFE T+I ++T+G+L R+
Sbjct: 532 GCTQPRRVAAVSVAKRVAEEVGCKVGHDVGYTIRFEDVTGPDTRIKYMTDGMLQRE 587
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 809 RTGPGVCYRLYSEEQ-YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RTGPG CYRLY+E Y+ + E + PEI+R ++ +L L MG+ D+ KF F++ PP
Sbjct: 811 RTGPGKCYRLYTESAFYNEMLENTVPEIQRQNLSHTILMLKAMGINDLLKFDFMDPPPKN 870
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLV 909
+ +++ L ++D + ++T LG+ +S P+D L + L+
Sbjct: 871 LMLNALTELYHLQSLDDEGKLTNLGKEMSLFPMDPTLSRSLL 912
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 1113 QVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 1172
Q + D +S Y V++LDE HER + D L ++K E+K+I+ SAT+N F
Sbjct: 585 QREALLDPEMSKYSVIMLDEAHERTVATDVLFALLKKAAIKRPELKVIVTSATLNSAKFS 644
Query: 1173 TYF 1175
YF
Sbjct: 645 EYF 647
>sp|Q9P774|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp16 PE=3 SV=2
Length = 1173
Score = 230 bits (587), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 135/427 (31%), Positives = 236/427 (55%), Gaps = 19/427 (4%)
Query: 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIA 374
N L Y V+++DE HER L+ D L+G++K +L ++K+++ SAT+N + F +F A
Sbjct: 601 NNLEKYSVIIMDEAHERSLNTDILMGLLKKVLSRRRDIKLLVTSATMNSQKFSDFFGG-A 659
Query: 375 KIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
+PGR YP+ + + D ++ +R + I P GD+L+FM+G
Sbjct: 660 PQFTIPGRTYPVDIMFAKAPCSDYVEAA-------VRQVLQIHLSQPA---GDILVFMTG 709
Query: 435 ISEISSIVRA-AQEYNE--KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAE 491
+I + A N+ + +LP++S + + Q ++F A G+RK +V+TNIAE
Sbjct: 710 QEDIEATCEIIADRLNQLHDAPRLSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAE 769
Query: 492 TSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLY 551
TS+T+ GI +VVD+G K Y+ + TLQ IS+A+A QR GRAGRTGPG+ YRLY
Sbjct: 770 TSLTVHGISYVVDTGYCKLKMYNSKLGIDTLQVTPISQANANQRAGRAGRTGPGIAYRLY 829
Query: 552 SEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQ 610
+E Y + E + PEI+R ++ + +L L +G+ ++ F F++ PP + + +S+ L
Sbjct: 830 TEMAYIREMFETTLPEIQRTNLSNTVLILKSLGVEEISDFDFMDRPPNDTLMASLYELWT 889
Query: 611 HGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAF 670
GA+D+ ++T+LG+ +S P+D L K+++ + + ++++ ++LSV S F
Sbjct: 890 LGALDNFGKLTTLGKKMSLFPMDPSLSKLIIIAEDYKCTEEIITIVSMLSVPSVFYRPKE 949
Query: 671 RDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLR 730
R + + AR++ D L +LN Y+ W + S WC + + + +R
Sbjct: 950 RAEESDAAREKFNVPESDHLMLLNIYQHW----QRNGYSNSWCSKHFLHSKTLKRARDIR 1005
Query: 731 SQFKQVL 737
Q +++
Sbjct: 1006 QQLVEIM 1012
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 81/133 (60%), Gaps = 3/133 (2%)
Query: 10 KLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKST 69
K+ R+ K+ +F+ RE + LP +++++ + +V+I+ G+TG GK+T
Sbjct: 464 KVAGRSEQSNKKDTEFARTKSYREQREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTT 523
Query: 70 QIPQYLVQAGFQR---IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKT 126
Q+ Q+L + G+ R I CTQPRR+A +S++KRV+ E + + VGY IRFE T
Sbjct: 524 QLAQFLYEDGYHRNGMIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDT 583
Query: 127 KIVFITEGLLLRQ 139
I ++T+G+LLR+
Sbjct: 584 VIKYMTDGVLLRE 596
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RTGPG+ YRLY+E Y + E + PEI+R ++ + +L L +G+ ++ F F++ PP +
Sbjct: 819 RTGPGIAYRLYTEMAYIREMFETTLPEIQRTNLSNTVLILKSLGVEEISDFDFMDRPPND 878
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
+ +S+ L GA+D+ ++TTLG+ +S P+D L K+++
Sbjct: 879 TLMASLYELWTLGALDNFGKLTTLGKKMSLFPMDPSLSKLIIIA 922
Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 1120 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIA 1179
N L Y V+++DE HER L+ D L+G++K +L ++K+++ SAT+N + F +F
Sbjct: 601 NNLEKYSVIIMDEAHERSLNTDILMGLLKKVLSRRRDIKLLVTSATMNSQKFSDFFGGAP 660
Query: 1180 KDLLSGST 1187
+ + G T
Sbjct: 661 QFTIPGRT 668
Score = 34.3 bits (77), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 192 AYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQV-QVATD----------NFLSSYDIL 240
A + + EE G RL S + F P V + TD N L Y ++
Sbjct: 550 AMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESLMQNNLEKYSVI 609
Query: 241 ILDEVHERHLYGDFLLGVI 259
I+DE HER L D L+G++
Sbjct: 610 IMDEAHERSLNTDILMGLL 628
>sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis
elegans GN=Y67D2.6 PE=3 SV=1
Length = 732
Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/442 (32%), Positives = 234/442 (52%), Gaps = 29/442 (6%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E+ AD LS Y ++++DE HER + D LLG+++ ++ +++II+ SAT++ ELF +
Sbjct: 182 EILADPLLSKYSIIMIDEAHERSCNTDILLGLLRKIIQIRNDLRIIVSSATLDAELFKDF 241
Query: 370 F---------NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKY 420
F A II V GR +P+ + + D +S +D +++I +
Sbjct: 242 FEMNETGNSDKDTAGIISVEGRTHPVAVHHTKTSVPDYCQS-AVD-----TVINIHKHEN 295
Query: 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQG----WIVLPLHSTLSLEEQDRVFHYA 476
P GD+L+F++G E+ + +E + W+V P + L EQ + F
Sbjct: 296 P----GDILVFLTGQDEVEDVCEKLRELAGNLKNCDRLWVV-PCYGALPAREQMKAFDST 350
Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
P G RK +V+TNIAE SITI GI +V+D+G VK + + TL +SKASAEQR
Sbjct: 351 PHGTRKVVVATNIAEASITIPGICYVIDTGYVKLRAQHAANGVETLMRVTVSKASAEQRA 410
Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
GRAGR PG CYRLY E ++ AE + PEI+R + S +L L +G+ +V +F +L P
Sbjct: 411 GRAGRIRPGKCYRLYPESEFERFAEGTVPEIQRCQMASTILQLKALGVQNVHRFHYLSPP 470
Query: 597 PAENIESSVRSLTQHGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655
P+ + + + L GAID ++TS LG +++ P+ K L+ + F ++++
Sbjct: 471 PSWAMINGLELLYALGAIDETSQLTSPLGLQMAEFPLPPMHSKCLLKSAEFGCSTEMVTI 530
Query: 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKR 715
A++ +Q F + + RK+ GD +T+LN + +++ + RSKKWC
Sbjct: 531 VAMMQIQDVFITPYRQRHQADVIRKKFAVEEGDHMTMLNVFTKFV----ENGRSKKWCSD 586
Query: 716 RGIEEQRFYEVTKLRSQFKQVL 737
+ + +RSQ ++L
Sbjct: 587 HFVNYRGLMRADNVRSQLVRLL 608
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 77/115 (66%), Gaps = 4/115 (3%)
Query: 29 MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIA 84
+ I++ + LP+ + + I+ + R +II G+TGCGKSTQ+PQ+L++AG+ ++I
Sbjct: 68 LNIQQQRIRLPIFKNRGHILYMCERYRTIIIVGETGCGKSTQVPQFLLEAGWAADGRQIV 127
Query: 85 CTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
TQPRR+A ++L+ RVA E + VGY +RF+ + TK+ F+T+GLLLR+
Sbjct: 128 ITQPRRVAVVTLATRVAEEKDCILGHDVGYTVRFDDVSDKDTKVKFMTDGLLLRE 182
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
R PG CYRLY E ++ AE + PEI+R + S +L L +G+ +V +F +L PP+
Sbjct: 414 GRIRPGKCYRLYPESEFERFAEGTVPEIQRCQMASTILQLKALGVQNVHRFHYLSPPPSW 473
Query: 868 NIESSVRSLTQHGAIDSKERVTT-LGRFLSDLPVDIPLGKMLVFGSMF 914
+ + + L GAID ++T+ LG +++ P+ K L+ + F
Sbjct: 474 AMINGLELLYALGAIDETSQLTSPLGLQMAEFPLPPMHSKCLLKSAEF 521
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 42/61 (68%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
++ AD LS Y ++++DE HER + D LLG+++ ++ +++II+ SAT++ ELF +
Sbjct: 182 EILADPLLSKYSIIMIDEAHERSCNTDILLGLLRKIIQIRNDLRIIVSSATLDAELFKDF 241
Query: 1175 F 1175
F
Sbjct: 242 F 242
Score = 34.7 bits (78), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
++ D LS Y I+++DE HER D LLG++
Sbjct: 182 EILADPLLSKYSIIMIDEAHERSCNTDILLGLL 214
>sp|Q9H2U1|DHX36_HUMAN Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36
PE=1 SV=2
Length = 1008
Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 167/535 (31%), Positives = 271/535 (50%), Gaps = 59/535 (11%)
Query: 263 LHCGGEIV----AADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLS 318
L+C I+ +D +LSS +VLDEIHER+L D L+ V+K LL NF S
Sbjct: 308 LYCTTGIILQWLQSDPYLSSVSHIVLDEIHERNLQSDVLMTVVKDLL---------NFRS 358
Query: 319 SYDVLVLDEIHER-------------HLHGDFLLGVIKCLLHSTAE-------------- 351
V+++ H+ G F V++ LL E
Sbjct: 359 DLKVILMSATLNAEKFSEYFGNCPMIHIPG-FTFPVVEYLLEDVIEKIRYVPEQKEHRSQ 417
Query: 352 VKIILMSATINI----ELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPG 407
K M +N E Y R ++ R Y + ++ + +K+D
Sbjct: 418 FKRGFMQGHVNRQEKEEKEAIYKERWPDYVRELRRRYSAST----VDVIEMMEDDKVDLN 473
Query: 408 PYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRA-AQEYNEKSQGWIVLPLHSTLSL 466
I+++I E G +L+F+ G IS++ + KS ++++PLHS +
Sbjct: 474 ---LIVALIRYIVLEEEDGAILVFLPGWDNISTLHDLLMSQVMFKSDKFLIIPLHSLMPT 530
Query: 467 EEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW 526
Q +VF P G+RK +++TNIAETSITID + +V+D GK+KE +D +ST+ W
Sbjct: 531 VNQTQVFKRTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEW 590
Query: 527 ISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGD 586
+SKA+A+QRKGRAGR PG CY LY+ + SLL +Y PEI R ++ L L + + LG
Sbjct: 591 VSKANAKQRKGRAGRVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGG 650
Query: 587 VRKF--PFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGS 644
+ F ++ P E + S+R L + A+D +E +T LG L+ LPV+ +GKM++FG+
Sbjct: 651 IAYFLSRLMDPPSNEAVLLSIRHLMELNALDKQEELTPLGVHLARLPVEPHIGKMILFGA 710
Query: 645 MFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKEL-ESNHGDPLTVLNAYKEWLGVK 703
+F +D VL++AA LS + PF ++ + RKEL + D LTV+NA++ W +
Sbjct: 711 LFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKDTRSDHLTVVNAFEGWEEAR 770
Query: 704 KDRVRSKK-WCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLIT--DIPGPDASLSS 755
+ R +K +C + + ++ QF + L +G ++ + P+++++S
Sbjct: 771 RRGFRYEKDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRNPKDPESNINS 825
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 19/150 (12%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPA 866
R PG CY LY+ + SLL +Y PEI R ++ L L + + LG + F ++ P
Sbjct: 605 RVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSN 664
Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
E + S+R L + A+D +E +T LG L+ LPV+ +GKM++FG++F +D +L + +
Sbjct: 665 EAVLLSIRHLMELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAAS 724
Query: 927 LNFGAIDSKERVTSLGRFLSDLPVDIPLGK 956
L+F P IPLGK
Sbjct: 725 LSFKD-----------------PFVIPLGK 737
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 78/131 (59%), Gaps = 10/131 (7%)
Query: 18 DFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV- 76
D ++K+ ++++ + LP ++E+++ + +V +I+G+TGCGK+TQ+ Q+++
Sbjct: 187 DLQKKKNDLRYIEMQHFREKLPSYGMQKELVNLIDNHQVTVISGETGCGKTTQVTQFILD 246
Query: 77 ------QAGFQRIACTQPRRIACISLSKRVAYETLSQY--SNLVGYQIRFEKH-RREKTK 127
+ RI CTQPRRI+ IS+++RVA E N GYQIR + R++
Sbjct: 247 NYIERGKGSACRIVCTQPRRISAISVAERVAAERAESCGSGNSTGYQIRLQSRLPRKQGS 306
Query: 128 IVFITEGLLLR 138
I++ T G++L+
Sbjct: 307 ILYCTTGIILQ 317
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 44/60 (73%)
Query: 1116 VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
+ +D +LSS +VLDEIHER+L D L+ V+K LL+ +++K+ILMSAT+N E F YF
Sbjct: 319 LQSDPYLSSVSHIVLDEIHERNLQSDVLMTVVKDLLNFRSDLKVILMSATLNAEKFSEYF 378
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 133/351 (37%), Gaps = 93/351 (26%)
Query: 977 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE 1036
+ A+D +E +T LG L+ LPV+ +GKM++FG++F +D +L + +L+F
Sbjct: 675 MELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKD----- 729
Query: 1037 RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEEAGERLE 1096
P IPLGK + + ++ D L V+ E EE
Sbjct: 730 ------------PFVIPLGKEKIADARRKELAKDTRSD-HLTVVNAFEGWEE-------- 768
Query: 1097 SMDANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE 1156
A FR + D + FLSS + +L ++ G F ++ S+
Sbjct: 769 ---ARRRGFRYEKD-----YCWEYFLSSNTLQML-----HNMKGQFAEHLLGAGFVSS-- 813
Query: 1157 VKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFN 1216
R KD S + + K I+K ++ +GLYP+VA N
Sbjct: 814 --------------------RNPKDPESNINSDNEK---IIKAVICAGLYPKVA-KIRLN 849
Query: 1217 TSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQ 1276
+ K + K G V++HP SV Q D +
Sbjct: 850 LGKKRKMVKVYTKTDGLVAVHPKSVNVEQTDF-------------------------HYN 884
Query: 1277 LLVYMSLLETSKPFLVNCLRMPALQTLLLFSS--AIHTNSDFTRLVFDSWI 1325
L+Y + TS +L +C + LL F +I ++D + D WI
Sbjct: 885 WLIYHLKMRTSSIYLYDCTEVSPY-CLLFFGGDISIQKDNDQETIAVDEWI 934
Score = 33.9 bits (76), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 228 VATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
+ +D +LSS ++LDE+HER+L D L+ V+
Sbjct: 319 LQSDPYLSSVSHIVLDEIHERNLQSDVLMTVV 350
>sp|Q9HE06|YK99_SCHPO Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
C20H4.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPAC20H4.09 PE=3 SV=1
Length = 647
Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 149/464 (32%), Positives = 244/464 (52%), Gaps = 21/464 (4%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E+ D L Y +++LDE+HER L D LLGV+K +L + +++L SA+++ +
Sbjct: 130 EIFFDPLLERYSIVILDEVHERTLSTDLLLGVLKRILEKRNDFRLVLSSASVDANKLSQF 189
Query: 370 FNR-IAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
F + + + G+L+P++ + L + +D I + I+ YP GD+
Sbjct: 190 FGQDKVCTMSIEGKLFPVETLF-----LQKPTENYVDSA--IETVININSTYPP---GDI 239
Query: 429 LIFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
L+F+SG EI ++ ++ +E Q + LPLH+ L+++EQ RVF+ RK I
Sbjct: 240 LVFLSGRKEIEYCIKKIEDSLIHASEDCQTLVPLPLHAGLTVDEQMRVFNIYDGDFRKVI 299
Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
STNIAETSITIDGI +VVDSG K+ Y+ + S L ISK+SA QR GRAGRT
Sbjct: 300 FSTNIAETSITIDGIVYVVDSGFNKQRIYNPYTRTSKLINVPISKSSAIQRSGRAGRTMR 359
Query: 545 GVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 604
G +RLY+E+ YSL+ E +I + L+L L +GL ++ +FPF PP ++ ++
Sbjct: 360 GKVFRLYTEKAYSLMKEEFEADILNCDMSPLVLFLKGLGLKNILQFPFFVRPPTVHLMAA 419
Query: 605 VRSLTQHGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
+ L G +D +T LG +S+ +D + K L+ + F +LS+A++L+
Sbjct: 420 LEDLYLLGVLDESGNLTDPLGIQISNSFLDANISKALLTSNQFGCTHEILSIASILTAGE 479
Query: 664 PFTN-RAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
F N + D A +N GD +T LN ++ ++G KKD +WC++ + Q
Sbjct: 480 VFYNPTSSSKNDAFVAHSSFFANEGDIITALNVFESFVGNKKDL----QWCRKNYLNYQT 535
Query: 723 FYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIK 766
+ +R+ + L + T P + S + L G ++
Sbjct: 536 LRQALDIRTHLVRFLNKFSIPTAQRLPSSDCSKILKCLLDGFVR 579
Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 73/106 (68%), Gaps = 4/106 (3%)
Query: 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR----IACTQPRRIAC 93
LP+ +Y+ +++ V + ++ I+ G TGCGK+TQIPQ+L +AG+ I CTQPRR+
Sbjct: 25 LPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQFLYEAGWASQNGIIGCTQPRRLVA 84
Query: 94 ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
S+S+RV+ E S +L GY I+F+ + EKTKI ++T+G+LL +
Sbjct: 85 KSVSERVSLELNSPPGSLCGYSIQFDHNVSEKTKIKYMTDGILLNE 130
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
RT G +RLY+E+ YSL+ E +I + L+L L +GL ++ +FPF PP +
Sbjct: 356 RTMRGKVFRLYTEKAYSLMKEEFEADILNCDMSPLVLFLKGLGLKNILQFPFFVRPPTVH 415
Query: 869 IESSVRSLTQHGAIDSKERVT-TLGRFLSDLPVDIPLGKMLVFGSMF 914
+ +++ L G +D +T LG +S+ +D + K L+ + F
Sbjct: 416 LMAALEDLYLLGVLDESGNLTDPLGIQISNSFLDANISKALLTSNQF 462
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
++ D L Y +++LDE+HER L D LLGV+K +L + +++L SA+++ +
Sbjct: 130 EIFFDPLLERYSIVILDEVHERTLSTDLLLGVLKRILEKRNDFRLVLSSASVDANKLSQF 189
Query: 1175 FNR 1177
F +
Sbjct: 190 FGQ 192
Score = 37.4 bits (85), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 231 DNFLSSYDILILDEVHERHLYGDFLLGVI 259
D L Y I+ILDEVHER L D LLGV+
Sbjct: 134 DPLLERYSIVILDEVHERTLSTDLLLGVL 162
>sp|Q54MH3|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1
Length = 1106
Score = 227 bits (578), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 141/434 (32%), Positives = 239/434 (55%), Gaps = 35/434 (8%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
L+SY VL++DE HER LH D L G++K + ++K+++ SAT++ E F YF+ A
Sbjct: 578 LASYSVLIIDEAHERTLHTDILFGLLKDITRFRPDLKLLISSATMDAERFSDYFDG-APT 636
Query: 377 IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436
+PGR Y + Y E D LD + +L I + GD+L+F++G
Sbjct: 637 FNIPGRKYEVTTHYTQAPEADY-----LDAA-VVTVLQI----HITEPLGDILVFLTGQE 686
Query: 437 EISSIVRAAQEYNEKSQGW-------IVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
E+ +AA+ +++G I+ ++STL + Q ++F P RK +++TNI
Sbjct: 687 EVD---QAAEMLQTRTRGLGTKIKELIITRIYSTLPTDLQAKIFEPTPPNARKVVLATNI 743
Query: 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYR 549
AETS+TIDGI +V+D G K+ ++ M +L +S+ASA QRKGRAGR PG C+R
Sbjct: 744 AETSLTIDGIIYVIDPGFCKQKMFNPRTGMESLVITPVSRASANQRKGRAGRVAPGKCFR 803
Query: 550 LYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
L++ + + L E + PEI+R ++ +++L L MG+ D+ F F++ PPA+ + +++ L
Sbjct: 804 LFTAWAFDNELEENTIPEIQRTNLGNVVLLLKSMGINDLMNFDFMDPPPAQTLIAALEQL 863
Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
GA++ + ++T LGR +++ PVD L KM++ + + +L++ A+LSV N
Sbjct: 864 YALGALNDRGQLTKLGRKMAEFPVDPQLSKMIIASEKYKCSEEILTICAMLSV----GNT 919
Query: 669 AFRDP-----DCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
F P + ARK GD LT++N + +W ++ + +WC I+ +
Sbjct: 920 IFYRPKDKAFAADAARKLFFHPQGDHLTLMNVFNQW----RESGYAVQWCFENFIQHRSM 975
Query: 724 YEVTKLRSQFKQVL 737
+R Q + +L
Sbjct: 976 KRAQDVRDQLELLL 989
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 82/114 (71%), Gaps = 3/114 (2%)
Query: 29 MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIAC 85
M I+E + SLPV Y++++ID V + +V+II G+TG GK+TQIPQYL +AGF +I C
Sbjct: 458 MTIQEVRKSLPVYPYREQLIDAVREYQVLIIVGETGSGKTTQIPQYLHEAGFSKTGKIGC 517
Query: 86 TQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
TQPRR+A +S++ RVA E + N VGY IRFE +KT + ++T+G+L+R+
Sbjct: 518 TQPRRVAAMSVAARVAEEVGCKLGNEVGYSIRFEDCTSQKTVLQYMTDGMLVRE 571
Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
R PG C+RL++ + + L E + PEI+R ++ +++L L MG+ D+ F F++ PPA+
Sbjct: 795 RVAPGKCFRLFTAWAFDNELEENTIPEIQRTNLGNVVLLLKSMGINDLMNFDFMDPPPAQ 854
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
+ +++ L GA++ + ++T LGR +++ PVD L KM++ + + +L + L
Sbjct: 855 TLIAALEQLYALGALNDRGQLTKLGRKMAEFPVDPQLSKMIIASEKYKCSEEILTICAML 914
Query: 928 NFG 930
+ G
Sbjct: 915 SVG 917
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
L+SY VL++DE HER LH D L G++K + ++K+++ SAT++ E F YF+
Sbjct: 578 LASYSVLIIDEAHERTLHTDILFGLLKDITRFRPDLKLLISSATMDAERFSDYFD 632
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 234 LSSYDILILDEVHERHLYGDFLLGVI 259
L+SY +LI+DE HER L+ D L G++
Sbjct: 578 LASYSVLIIDEAHERTLHTDILFGLL 603
>sp|Q7Z478|DHX29_HUMAN ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2
Length = 1369
Score = 223 bits (568), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 164/533 (30%), Positives = 269/533 (50%), Gaps = 78/533 (14%)
Query: 314 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN----------- 362
D LS+ +++DE+HER + DFLL ++K +L +++ +ILMSAT++
Sbjct: 690 DGLLSNVSHVIVDEVHERSVQSDFLLIILKEILQKRSDLHLILMSATVDSEKFSTYFTHC 749
Query: 363 -----------IELFH----------------TYFNRI--------------AKIIKVPG 381
+E+FH Y + A IK
Sbjct: 750 PILRISGRSYPVEVFHLEDIIEETGFVLEKDSEYCQKFLEEEEEVTINVTSKAGGIKKYQ 809
Query: 382 RLYPIQLEYH----PIVEL--DRTKSEKLDPGPY-------IRILSIIDKKYP-RTERGD 427
P+Q H P + RT+ L P+ + +L+ +DK R G
Sbjct: 810 EYIPVQTGAHADLNPFYQKYSSRTQHAILYMNPHKINLDLILELLAYLDKSPQFRNIEGA 869
Query: 428 VLIFMSGISEISSIVRA-AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
VLIF+ G++ I + + + S+ + V+ LHS LS ++Q F P G+RK +++
Sbjct: 870 VLIFLPGLAHIQQLYDLLSNDRRFYSERYKVIALHSILSTQDQAAAFTLPPPGVRKIVLA 929
Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
TNIAET ITI + FV+D+G+ KE Y +++MS+L E ++SKASA QR+GRAGR G
Sbjct: 930 TNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASALQRQGRAGRVRDGF 989
Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPAENIESS 604
C+R+Y+ E++ +YS PEI RV ++ L L ++ LG F L+ P + I ++
Sbjct: 990 CFRMYTRERFEGFMDYSVPEILRVPLEELCLHIMKCNLGSPEDFLSKALDPPQLQVISNA 1049
Query: 605 VRSLTQHGAIDSKE-RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
+ L + GA + E ++T LG+ L+ LPV++ +GKML+FG++F +D V +LAAV++ +S
Sbjct: 1050 MNLLRKIGACELNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDPVATLAAVMTEKS 1109
Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDR----VRSK-KWCKRRGI 718
PFT R + + A+ L D LT+ NAY LG KK R RS+ +C+R +
Sbjct: 1110 PFTTPIGRKDEADLAKSALAMADSDHLTIYNAY---LGWKKARQEGGYRSEITYCRRNFL 1166
Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAI 771
+ ++ + +++ +G + + + L EI LL+A+
Sbjct: 1167 NRTSLLTLEDVKQELIKLVKAAGFSSSTTSTSWEGNRASQTLSFQEIALLKAV 1219
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 87/139 (62%), Gaps = 18/139 (12%)
Query: 24 KFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV------- 76
K+ L+K R+ LPV +++ I++T+ + RVV++AG+TG GKSTQ+P +L+
Sbjct: 561 KYQKLLKERQ---QLPVFKHRDSIVETLKRHRVVVVAGETGSGKSTQVPHFLLEDLLLNE 617
Query: 77 -QAGFQRIACTQPRRIACISLSKRVAYETLSQY-----SNLVGYQIRFEKHRREKTKIVF 130
+A I CTQPRRI+ +SL+ RV E + ++L GYQIR E E T++++
Sbjct: 618 WEASKCNIVCTQPRRISAVSLANRVCDELGCENGPGGRNSLCGYQIRMESRACESTRLLY 677
Query: 131 ITEGLLLR--QDSGLITDI 147
T G+LLR Q+ GL++++
Sbjct: 678 CTTGVLLRKLQEDGLLSNV 696
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPA 866
R G C+R+Y+ E++ +YS PEI RV ++ L L ++ LG F L+ P
Sbjct: 984 RVRDGFCFRMYTRERFEGFMDYSVPEILRVPLEELCLHIMKCNLGSPEDFLSKALDPPQL 1043
Query: 867 ENIESSVRSLTQHGAIDSKE-RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
+ I +++ L + GA + E ++T LG+ L+ LPV++ +GKML+FG++F +D + L
Sbjct: 1044 QVISNAMNLLRKIGACELNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDPVATL 1101
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
D LS+ +++DE+HER + DFLL ++K +L +++ +ILMSAT++ E F TYF
Sbjct: 690 DGLLSNVSHVIVDEVHERSVQSDFLLIILKEILQKRSDLHLILMSATVDSEKFSTYFTHC 749
Query: 1179 AKDLLSGST 1187
+SG +
Sbjct: 750 PILRISGRS 758
Score = 42.7 bits (99), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 973 LDLALNFGAIDSKE-RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1023
++L GA + E ++T LG+ L+ LPV++ +GKML+FG++F +D + L
Sbjct: 1050 MNLLRKIGACELNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDPVATL 1101
Score = 42.7 bits (99), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 1023 LDLALNFGAIDSKE-RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1073
++L GA + E ++T LG+ L+ LPV++ +GKML+FG++F +D + L
Sbjct: 1050 MNLLRKIGACELNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDPVATL 1101
>sp|Q6PE54|DHX40_MOUSE Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40
PE=2 SV=1
Length = 779
Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 146/470 (31%), Positives = 256/470 (54%), Gaps = 40/470 (8%)
Query: 303 CLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-----EVKIILM 357
CLL + D LS + V++LDE HER L D L G++K L + +K+++M
Sbjct: 153 CLLK---HILGDPNLSKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVM 209
Query: 358 SATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV-ELDRTKSEKLDPGPYIR-ILSI 415
SAT+ + +F I +PGRLYP++ ++ ++ DR + YI+ I+ +
Sbjct: 210 SATMELAKLSAFFGN-CPIFDIPGRLYPVREKFCNLIGPRDRENTA------YIQAIVKV 262
Query: 416 IDKKYPRTERGDVLIFMSGISEISS----IVRAAQ--EYNEKSQ-----GWIVLPLHSTL 464
+ GD+L+F++G EI + + A+ +Y+ Q G ++LP + ++
Sbjct: 263 TMDIHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSM 322
Query: 465 SLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQE 524
+ ++Q R+F P G+RKC++STNI+ TS+TIDGIR+VVD G VK+++++ + L+
Sbjct: 323 TTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEV 382
Query: 525 FWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMG 583
ISK+ A QR GRAGRT G C+R+YS+E +S + ++ PEI+R S+ S++L+L C+
Sbjct: 383 VPISKSEALQRSGRAGRTASGKCFRIYSKEFWSQCMPDHVIPEIKRTSLTSVVLTLKCLA 442
Query: 584 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFG 643
+ DV +FP+L+ P I +++ L Q AID VT LG + + P+ L ++
Sbjct: 443 IHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIRA 502
Query: 644 SMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LG 701
+ D +L +AA+LSV++ F DP+ +KE E H + + ++ L
Sbjct: 503 ASLDCEDLLLPIAAMLSVENVFIRPV--DPE---YQKEAEQRHRELAAKAGGFNDFATLA 557
Query: 702 VKKDRVRSK----KWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIP 747
V ++ +S WC++ I + + ++ +Q ++++ +D P
Sbjct: 558 VIFEQCKSSGAPASWCQKHWIHWRCLFSAFRVEAQLRELIRKLKQQSDFP 607
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 72/112 (64%), Gaps = 3/112 (2%)
Query: 34 TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRR 90
T + P+ + ++++I V +I+ G+TG GK+TQ+P+YL +AGF + I TQPR+
Sbjct: 49 TTPTFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRK 108
Query: 91 IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
+A IS+++RVA E + VGYQ+RF+ ++T I ++T+G LL+ G
Sbjct: 109 VAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILG 160
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 809 RTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RT G C+R+YS+E +S + ++ PEI+R S+ S++L+L C+ + DV +FP+L+ P
Sbjct: 399 RTASGKCFRIYSKEFWSQCMPDHVIPEIKRTSLTSVVLTLKCLAIHDVIRFPYLDPPNER 458
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPV 900
I +++ L Q AID VT LG + + P+
Sbjct: 459 LILEALKQLYQCDAIDRSGHVTRLGLSMVEFPL 491
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-----EVKIILMSATINIE 1169
+ D LS + V++LDE HER L D L G++K L + +K+++MSAT+ +
Sbjct: 157 HILGDPNLSKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSATMELA 216
Query: 1170 LFHTYFN 1176
+F
Sbjct: 217 KLSAFFG 223
>sp|P20095|PRP2_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
PRP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PRP2 PE=1 SV=1
Length = 876
Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 141/444 (31%), Positives = 227/444 (51%), Gaps = 29/444 (6%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D+ LS Y +++DE HER L D L+G++K +L +K+++ SAT+N + F +
Sbjct: 330 EFLTDSKLSKYSCIMIDEAHERTLATDILIGLLKDILPQRPTLKLLISSATMNAKKFSEF 389
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDP-GPYIR--ILSIIDKKYPRTERG 426
F+ I VPGR YP+ + Y L P YI I +I ++ G
Sbjct: 390 FDN-CPIFNVPGRRYPVDIHY------------TLQPEANYIHAAITTIFQIHTTQSLPG 436
Query: 427 DVLIFMSGISEISSIVRAAQEYNEK----SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRK 482
D+L+F++G EI +E K ++ I+ P+++ L E+Q ++F PE RK
Sbjct: 437 DILVFLTGQEEIERTKTKLEEIMSKLGSRTKQMIITPIYANLPQEQQLKIFQPTPENCRK 496
Query: 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542
+++TNIAETS+TIDGIR+V+D G VKE SY + M+ L S+AS +QR GRAGR
Sbjct: 497 VVLATNIAETSLTIDGIRYVIDPGFVKENSYVPSTGMTQLLTVPCSRASVDQRAGRAGRV 556
Query: 543 GPGVCYRLYSEEQYSLLAEYS---TPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 599
GPG C+R+++ ++S L E PEI R ++ + +L L+ +G+ D+ KFP ++ P
Sbjct: 557 GPGKCFRIFT--KWSYLHELELMPKPEITRTNLSNTVLLLLSLGVTDLIKFPLMDKPSIP 614
Query: 600 NIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVL 659
+ S+ +L GA++SK +T LG+ + + P + K+L + Q VL +
Sbjct: 615 TLRKSLENLYILGALNSKGTITRLGKMMCEFPCEPEFAKVLYTAATHEQCQGVLEECLTI 674
Query: 660 SVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIE 719
T F + A L D + L + +W K S+ WC+ I+
Sbjct: 675 VSMLHETPSLFIGQKRDAAASVLSEVESDHILYLEIFNQWRNSK----FSRSWCQDHKIQ 730
Query: 720 EQRFYEVTKLRSQFKQVLGDSGLI 743
+ V +R+Q + GL+
Sbjct: 731 FKTMLRVRNIRNQLFRCSEKVGLV 754
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 79/118 (66%), Gaps = 6/118 (5%)
Query: 28 LMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ-----R 82
++ I+E + LPV QYK E++ + K +V+II G+TG GK+TQ+PQYLV+ GF +
Sbjct: 213 ILTIQEARKLLPVHQYKDELLQEIKKNQVLIIMGETGSGKTTQLPQYLVEDGFTDQGKLQ 272
Query: 83 IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE-KHRREKTKIVFITEGLLLRQ 139
IA TQPRR+A S++ RVA E VGYQIRFE K KT + ++T+G+LLR+
Sbjct: 273 IAITQPRRVAATSVAARVADEMNVVLGKEVGYQIRFEDKTTPNKTVLKYMTDGMLLRE 330
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYS---TPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 865
R GPG C+R+++ ++S L E PEI R ++ + +L L+ +G+ D+ KFP ++ P
Sbjct: 555 RVGPGKCFRIFT--KWSYLHELELMPKPEITRTNLSNTVLLLLSLGVTDLIKFPLMDKPS 612
Query: 866 AENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
+ S+ +L GA++SK +T LG+ + + P + K+L + Q +L
Sbjct: 613 IPTLRKSLENLYILGALNSKGTITRLGKMMCEFPCEPEFAKVLYTAATHEQCQGVL 668
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
D+ LS Y +++DE HER L D L+G++K +L +K+++ SAT+N + F +F+
Sbjct: 333 TDSKLSKYSCIMIDEAHERTLATDILIGLLKDILPQRPTLKLLISSATMNAKKFSEFFD 391
Score = 34.7 bits (78), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 230 TDNFLSSYDILILDEVHERHLYGDFLLGVI 259
TD+ LS Y +++DE HER L D L+G++
Sbjct: 333 TDSKLSKYSCIMIDEAHERTLATDILIGLL 362
>sp|Q5XI69|DHX40_RAT Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus
GN=Dhx40 PE=2 SV=1
Length = 779
Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 143/470 (30%), Positives = 256/470 (54%), Gaps = 40/470 (8%)
Query: 303 CLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-----EVKIILM 357
CLL + D L+ + V++LDE HER L D L G++K L + +K+++M
Sbjct: 153 CLLK---HILGDPNLNKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVM 209
Query: 358 SATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV-ELDRTKSEKLDPGPYIR-ILSI 415
SAT+ + +F I +PGRLYP++ ++ ++ DR + YI+ I+ +
Sbjct: 210 SATMELAKLSAFFGN-CPIFDIPGRLYPVREKFCNLIGPRDRENTA------YIQAIVKV 262
Query: 416 IDKKYPRTERGDVLIFMSGISEISS----IVRAAQ--EYNEKSQ-----GWIVLPLHSTL 464
+ GD+L+F++G EI + + A+ +Y+ Q G ++LP + ++
Sbjct: 263 TMDIHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSM 322
Query: 465 SLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQE 524
+ ++Q R+F P G+RKC++STNI+ TS+TIDGIR+VVD G VK+++++ + L+
Sbjct: 323 TTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEV 382
Query: 525 FWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMG 583
ISK+ A QR GRAGRT G C+R+YS++ ++ + ++ PEI+R S+ S++L+L C+
Sbjct: 383 VPISKSEALQRSGRAGRTASGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCLA 442
Query: 584 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFG 643
+ DV +FP+L+ P I +++ L Q AID VT LG + + P+ L ++
Sbjct: 443 IHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIRA 502
Query: 644 SMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LG 701
+ D +L +AA+LSV++ F DP+ +KE E H + + ++ L
Sbjct: 503 ASLDCEDLLLPIAAMLSVENVFIRPV--DPE---YQKEAEQKHRELAAKAGGFNDFATLA 557
Query: 702 VKKDRVRSK----KWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIP 747
V ++ +S WC++ I + + ++ +Q ++++ +D P
Sbjct: 558 VIFEQCKSSGAPASWCQKHWIHWRCLFSAFRVEAQLRELIRKLKQQSDFP 607
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 72/112 (64%), Gaps = 3/112 (2%)
Query: 34 TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRR 90
T + P+ + ++++I V +I+ G+TG GK+TQ+P+YL +AGF + I TQPR+
Sbjct: 49 TTPTFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRK 108
Query: 91 IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSG 142
+A IS+++RVA E + VGYQ+RF+ ++T I ++T+G LL+ G
Sbjct: 109 VAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILG 160
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 808 SRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPA 866
RT G C+R+YS++ ++ + ++ PEI+R S+ S++L+L C+ + DV +FP+L+ P
Sbjct: 398 GRTASGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCLAIHDVIRFPYLDPPNE 457
Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPV 900
I +++ L Q AID VT LG + + P+
Sbjct: 458 RLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPL 491
Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-----EVKIILMSATINIE 1169
+ D L+ + V++LDE HER L D L G++K L + +K+++MSAT+ +
Sbjct: 157 HILGDPNLNKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSATMELA 216
Query: 1170 LFHTYFN 1176
+F
Sbjct: 217 KLSAFFG 223
>sp|Q5R864|DHX40_PONAB Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40
PE=2 SV=1
Length = 779
Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 143/470 (30%), Positives = 256/470 (54%), Gaps = 40/470 (8%)
Query: 303 CLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-----EVKIILM 357
CLL + D L+ + V++LDE HER L D L G++K L + +K+++M
Sbjct: 153 CLLK---HILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVM 209
Query: 358 SATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV-ELDRTKSEKLDPGPYIR-ILSI 415
SAT+ + +F I +PGRLYP++ ++ ++ DR + YI+ I+ +
Sbjct: 210 SATMELAKLSAFFGN-CPIFDIPGRLYPVREKFCNLIGPRDRENTA------YIQAIVKV 262
Query: 416 IDKKYPRTERGDVLIFMSGISEISS----IVRAAQ--EYNEKSQ-----GWIVLPLHSTL 464
+ GD+L+F++G EI + + A+ +Y+ Q G ++LP + ++
Sbjct: 263 TMDIHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSM 322
Query: 465 SLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQE 524
+ ++Q R+F P G+RKC++STNI+ TS+TIDGIR+VVD G VK+++++ + L+
Sbjct: 323 TTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEV 382
Query: 525 FWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMG 583
ISK+ A QR GRAGRT G C+R+YS++ ++ + ++ PEI+R S+ S++L+L C+
Sbjct: 383 VPISKSEALQRSGRAGRTASGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCLA 442
Query: 584 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFG 643
+ DV +FP+L+ P I +++ L Q AID VT LG + + P+ L ++
Sbjct: 443 IHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIKA 502
Query: 644 SMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LG 701
+ D +L +AA+LSV++ F DP+ +KE E H + + ++ L
Sbjct: 503 ASLDCEDLLLPIAAMLSVENVFIRPV--DPE---YQKEAEQRHRELAAKAGGFNDFATLA 557
Query: 702 VKKDRVRSK----KWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIP 747
V ++ +S WC++ I + + ++ +Q ++++ +D P
Sbjct: 558 VIFEQCKSSGAPASWCQKHWIHWRCLFSAFRVEAQLRELIRKLKQQSDFP 607
Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 71/109 (65%), Gaps = 3/109 (2%)
Query: 34 TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRR 90
T + P+ + +++II V +I+ G+TG GK+TQ+P+YL +AGF + I TQPR+
Sbjct: 49 TTPTFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRK 108
Query: 91 IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
+A IS+++RVA E + VGYQ+RF+ ++T I ++T+G LL+
Sbjct: 109 VAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKH 157
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 809 RTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RT G C+R+YS++ ++ + ++ PEI+R S+ S++L+L C+ + DV +FP+L+ P
Sbjct: 399 RTASGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCLAIHDVIRFPYLDPPNER 458
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPV 900
I +++ L Q AID VT LG + + P+
Sbjct: 459 LILEALKQLYQCDAIDRSGHVTRLGLSMVEFPL 491
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-----EVKIILMSATINIE 1169
+ D L+ + V++LDE HER L D L G++K L + +K+++MSAT+ +
Sbjct: 157 HILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELA 216
Query: 1170 LFHTYFN 1176
+F
Sbjct: 217 KLSAFFG 223
>sp|Q8IX18|DHX40_HUMAN Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40
PE=1 SV=2
Length = 779
Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 143/470 (30%), Positives = 256/470 (54%), Gaps = 40/470 (8%)
Query: 303 CLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-----EVKIILM 357
CLL + D L+ + V++LDE HER L D L G++K L + +K+++M
Sbjct: 153 CLLK---HILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVM 209
Query: 358 SATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV-ELDRTKSEKLDPGPYIR-ILSI 415
SAT+ + +F I +PGRLYP++ ++ ++ DR + YI+ I+ +
Sbjct: 210 SATMELAKLSAFFGN-CPIFDIPGRLYPVREKFCNLIGPRDRENTA------YIQAIVKV 262
Query: 416 IDKKYPRTERGDVLIFMSGISEISS----IVRAAQ--EYNEKSQ-----GWIVLPLHSTL 464
+ GD+L+F++G EI + + A+ +Y+ Q G ++LP + ++
Sbjct: 263 TMDIHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSM 322
Query: 465 SLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQE 524
+ ++Q R+F P G+RKC++STNI+ TS+TIDGIR+VVD G VK+++++ + L+
Sbjct: 323 TTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEV 382
Query: 525 FWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMG 583
ISK+ A QR GRAGRT G C+R+YS++ ++ + ++ PEI+R S+ S++L+L C+
Sbjct: 383 VPISKSEALQRSGRAGRTSSGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCLA 442
Query: 584 LGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFG 643
+ DV +FP+L+ P I +++ L Q AID VT LG + + P+ L ++
Sbjct: 443 IHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIKA 502
Query: 644 SMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LG 701
+ D +L +AA+LSV++ F DP+ +KE E H + + ++ L
Sbjct: 503 ASLDCEDLLLPIAAMLSVENVFIRPV--DPE---YQKEAEQRHRELAAKAGGFNDFATLA 557
Query: 702 VKKDRVRSK----KWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIP 747
V ++ +S WC++ I + + ++ +Q ++++ +D P
Sbjct: 558 VIFEQCKSSGAPASWCQKHWIHWRCLFSAFRVEAQLRELIRKLKQQSDFP 607
Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 71/109 (65%), Gaps = 3/109 (2%)
Query: 34 TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRR 90
T + P+ + +++II V +I+ G+TG GK+TQ+P+YL +AGF + I TQPR+
Sbjct: 49 TTPTFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRK 108
Query: 91 IACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
+A IS+++RVA E + VGYQ+RF+ ++T I ++T+G LL+
Sbjct: 109 VAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKH 157
Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 809 RTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RT G C+R+YS++ ++ + ++ PEI+R S+ S++L+L C+ + DV +FP+L+ P
Sbjct: 399 RTSSGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCLAIHDVIRFPYLDPPNER 458
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPV 900
I +++ L Q AID VT LG + + P+
Sbjct: 459 LILEALKQLYQCDAIDRSGHVTRLGLSMVEFPL 491
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-----EVKIILMSATINIE 1169
+ D L+ + V++LDE HER L D L G++K L + +K+++MSAT+ +
Sbjct: 157 HILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELA 216
Query: 1170 LFHTYFN 1176
+F
Sbjct: 217 KLSAFFG 223
>sp|Q9H5Z1|DHX35_HUMAN Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35
PE=1 SV=2
Length = 703
Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 231/445 (51%), Gaps = 32/445 (7%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E+ D L+ Y V++LDE HER L+ D +G++K + ++++I+ SAT++ + F +
Sbjct: 160 EMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVASATLDADKFRDF 219
Query: 370 FNR---------IAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKY 420
FN+ I+ V GR +P+ + Y D KS + + K +
Sbjct: 220 FNQNETSDPARDTCVILTVEGRTFPVDIFYLQSPVPDYIKS----------TVETVVKIH 269
Query: 421 PRTERGDVLIFMSGISEISSIV-------RAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF 473
GDVL F++G E+ ++V RA K VLP+++ L EQ +VF
Sbjct: 270 QTEGDGDVLAFLTGQEEVETVVSMLIEQARALARTGMKRH-LRVLPMYAGLPSFEQMKVF 328
Query: 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAE 533
+RK IV+TN+AETSITI GI +V+D G VK +Y+ + L +S+ASA
Sbjct: 329 ERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASAN 388
Query: 534 QRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFL 593
QR GR GR+ G CYRLY+EE + L + + PE++R ++ ++L L +G+ +V +F F+
Sbjct: 389 QRAGRGGRSRSGKCYRLYTEEAFDKLPQSTVPEMQRSNLAPVILQLKALGIDNVLRFHFM 448
Query: 594 EAPPAENIESSVRSLTQHGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTV 652
PPA+++ ++ L G +D R+T LG +++ P++ KML+ F +
Sbjct: 449 SPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEI 508
Query: 653 LSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW 712
LS+AA++ +Q+ F + ++ GD LT+LN Y+ ++ KD KW
Sbjct: 509 LSIAAMMQIQNIFVVPPNQKSHAIRVHRKFAVEEGDHLTMLNIYEAFIKHNKD----SKW 564
Query: 713 CKRRGIEEQRFYEVTKLRSQFKQVL 737
C+ + + +R Q K++L
Sbjct: 565 CQEHFLNYKGLVRAATVREQLKKLL 589
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 75/116 (64%), Gaps = 5/116 (4%)
Query: 29 MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIA 84
+ I + + LPV + + I+ + + V+I G+TGCGKSTQIPQYL +AG+ + +
Sbjct: 45 LSIEQQRQKLPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVG 104
Query: 85 CTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE-KTKIVFITEGLLLRQ 139
TQPRR+A ++++ RVA E + + VGY IRF+ + T+I F+T+G+L+R+
Sbjct: 105 VTQPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVRE 160
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
R+ G CYRLY+EE + L + + PE++R ++ ++L L +G+ +V +F F+ PPA+
Sbjct: 395 GRSRSGKCYRLYTEEAFDKLPQSTVPEMQRSNLAPVILQLKALGIDNVLRFHFMSPPPAQ 454
Query: 868 NIESSVRSLTQHGAIDSKERVT-TLGRFLSDLPVDIPLGKMLVFGSMF 914
++ ++ L G +D R+T LG +++ P++ KML+ F
Sbjct: 455 SMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNF 502
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 41/63 (65%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
++ D L+ Y V++LDE HER L+ D +G++K + ++++I+ SAT++ + F +
Sbjct: 160 EMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVASATLDADKFRDF 219
Query: 1175 FNR 1177
FN+
Sbjct: 220 FNQ 222
Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
++ D L+ Y +++LDE HER LY D +G++
Sbjct: 160 EMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLL 192
>sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=prh1 PE=3 SV=2
Length = 719
Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 138/430 (32%), Positives = 228/430 (53%), Gaps = 17/430 (3%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E+ D LS Y L+LDE HER L D LLG +K ++ +++I+MSAT+N E F +
Sbjct: 200 ELINDPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKRPALRVIIMSATLNAERFSEF 259
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F+ A+I + GR YP+Q+ Y E D LD +R + + K P GD+L
Sbjct: 260 FDG-AEICYISGRQYPVQIHYTYTPEPDY-----LDA--CLRTIFQLHTKLPP---GDIL 308
Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWI----VLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
+F++G EI ++ + Y+++ + PL ++L E+Q +VF A RK ++
Sbjct: 309 VFLTGQDEIEALEALIKSYSKQLPSNLPQIQACPLFASLPQEQQLQVFLPALANHRKVVL 368
Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
STNIAETS+TI GIR+V+D+G K ++ + +L IS+++A QR GRAGR G
Sbjct: 369 STNIAETSVTISGIRYVIDTGLAKIKQFNSKLGLESLTVQPISQSAAMQRSGRAGREAAG 428
Query: 546 VCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
CYR+Y+E + L + + PEI+R+ + +L+L G DV F +++ P E + ++
Sbjct: 429 QCYRIYTEADFDKLPKETIPEIKRIDLSQAVLTLKARGQNDVINFHYMDPPSKEGLLRAL 488
Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
L GA+D + LG +S +P+ L + ++ + + V+ + + LS S F
Sbjct: 489 EHLYSIGALDDNGHINDLGYQMSLIPLLPSLARAVLAAREHNCLSEVIDVVSCLSTDSMF 548
Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYE 725
+ + AR + + GD LT LNA +++L D K+WC + I +
Sbjct: 549 LFPQEKRDEAIEARLKFLHSEGDLLTCLNALRQYLESSHD--SRKQWCSQNFINRRALKT 606
Query: 726 VTKLRSQFKQ 735
+ +R Q ++
Sbjct: 607 ILDIRKQLRE 616
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 75/119 (63%), Gaps = 6/119 (5%)
Query: 31 IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIAC---TQ 87
I E + +LP+ + + + RV+++ G+TG GKSTQIPQ+L + + + C TQ
Sbjct: 89 ILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECPYAQEGCVAITQ 148
Query: 88 PRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITD 146
PRR+A ++L+KRVA E + VGY IRF+ +KT+I ++T+G+LLR+ LI D
Sbjct: 149 PRRVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLRE---LIND 204
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
R G CYR+Y+E + L + + PEI+R+ + +L+L G DV F +++ P E
Sbjct: 424 REAAGQCYRIYTEADFDKLPKETIPEIKRIDLSQAVLTLKARGQNDVINFHYMDPPSKEG 483
Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPV 900
+ ++ L GA+D + LG +S +P+
Sbjct: 484 LLRALEHLYSIGALDDNGHINDLGYQMSLIPL 515
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
D LS Y L+LDE HER L D LLG +K ++ +++I+MSAT+N E F +F+
Sbjct: 204 DPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKRPALRVIIMSATLNAERFSEFFDGA 263
Query: 1179 AKDLLSG 1185
+SG
Sbjct: 264 EICYISG 270
Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
++ D LS Y LILDE HER L D LLG +
Sbjct: 200 ELINDPILSQYHTLILDEAHERTLMTDMLLGFV 232
>sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57
PE=1 SV=2
Length = 1386
Score = 217 bits (552), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 197/341 (57%), Gaps = 16/341 (4%)
Query: 415 IIDKK--YPRTERGDVLIFMSGISEISSIVRAAQEY----NEKSQGWIVLPLHSTLSLEE 468
I+D K YP G +L+F+ G++EI + Q N +S ++ PLHS+LS EE
Sbjct: 838 IVDGKHSYPP---GAILVFLPGLAEIKMLYEQLQSNSLFNNRRSNRCVIHPLHSSLSSEE 894
Query: 469 QDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWIS 528
Q VF P G+ K I+STNIAETSITID + +V+DSGK+KE YD + M +L++ ++S
Sbjct: 895 QQAVFVKPPAGVTKIIISTNIAETSITIDDVVYVIDSGKMKEKRYDASKGMESLEDTFVS 954
Query: 529 KASAEQRKGRAGRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDV 587
+A+A QRKGRAGR GVC+ L++ Y+ L + PEI+RV ++ L L + + +
Sbjct: 955 QANALQRKGRAGRVASGVCFHLFTSHHYNHQLLKQQLPEIQRVPLEQLCLRIKILEMFSA 1014
Query: 588 RKFP-----FLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVF 642
+E P +++ +S L GA+ ER+T LG L+ LPVD+ +GK+++F
Sbjct: 1015 HNLQSVFSRLIEPPHTDSLRASKIRLRDLGALTPDERLTPLGYHLASLPVDVRIGKLMLF 1074
Query: 643 GSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGV 702
GS+F +D L++AA L+ +SPF + + + + E + D L +L AYK W
Sbjct: 1075 GSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKLEFAFANSDYLALLQAYKGWQLS 1134
Query: 703 KKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742
K+ VR S +C++ + + E+ L+ QF ++L D G
Sbjct: 1135 TKEGVRASYNYCRQNFLSGRVLQEMASLKRQFTELLSDIGF 1175
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 7/131 (5%)
Query: 19 FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA 78
F+ K+ I + + SLP + ++ I++ + K +VV+I+G TGCGK+TQIPQ+++
Sbjct: 525 FRMKQASRQFQSILQERQSLPAWEERETILNLLRKHQVVVISGMTGCGKTTQIPQFILDD 584
Query: 79 GFQ-------RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFI 131
I CTQPRRI+ IS+++RVA E + VGYQIR E + T++++
Sbjct: 585 SLNGPPEKVANIICTQPRRISAISVAERVAKERAERVGLTVGYQIRLESVKSSATRLLYC 644
Query: 132 TEGLLLRQDSG 142
T G+LLR+ G
Sbjct: 645 TTGVLLRRLEG 655
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 6/129 (4%)
Query: 809 RTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFP-----FLE 862
R GVC+ L++ Y+ L + PEI+RV ++ L L + + + +E
Sbjct: 967 RVASGVCFHLFTSHHYNHQLLKQQLPEIQRVPLEQLCLRIKILEMFSAHNLQSVFSRLIE 1026
Query: 863 APPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
P +++ +S L GA+ ER+T LG L+ LPVD+ +GK+++FGS+F +D L
Sbjct: 1027 PPHTDSLRASKIRLRDLGALTPDERLTPLGYHLASLPVDVRIGKLMLFGSIFRCLDPALT 1086
Query: 923 LDLALNFGA 931
+ +L F +
Sbjct: 1087 IAASLAFKS 1095
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 313 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR 372
D L +++DE+HER DFLL V+K ++ +++ILMSAT+N ELF YFN
Sbjct: 655 GDTALQGVSHIIVDEVHERTEESDFLLLVLKDIVSQRPGLQVILMSATLNAELFSDYFNS 714
Query: 373 IAKIIKVPGRLYPI-QLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERG 426
+I +PGR +P+ Q + + R + D PY+R + I K+ + R
Sbjct: 715 -CPVITIPGRTFPVDQFFLEDAIAVTRYVLQ--DGSPYMRSMKQISKEKLKARRN 766
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
++ D L +++DE+HER DFLL V+K ++ +++ILMSAT+N ELF Y
Sbjct: 652 RLEGDTALQGVSHIIVDEVHERTEESDFLLLVLKDIVSQRPGLQVILMSATLNAELFSDY 711
Query: 1175 FNRIAKDLLSGST 1187
FN + G T
Sbjct: 712 FNSCPVITIPGRT 724
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 107/243 (44%), Gaps = 44/243 (18%)
Query: 1028 NFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHH--SEE 1085
+ GA+ ER+T LG L+ LPVD+ +GK+++FGS+F +D L + +L F S
Sbjct: 1042 DLGALTPDERLTPLGYHLASLPVDVRIGKLMLFGSIFRCLDPALTIAASLAFKSPFVSPW 1101
Query: 1086 EEEEEAGE-RLESMDANEVEFRLKHDPKQVQVAA-DNFLSSYDVLVLDEIHERHLHGDFL 1143
+++EEA + +LE AN L K Q++ + +SY+ + +FL
Sbjct: 1102 DKKEEANQKKLEFAFANSDYLALLQAYKGWQLSTKEGVRASYN----------YCRQNFL 1151
Query: 1144 LGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDL------------LSGSTARSH 1191
G + L A +K +I A+++ +G A S+
Sbjct: 1152 SGRV---LQEMASLKRQFTELLSDIGFAREGLR--AREIEKRAQGGDGVLDATGEEANSN 1206
Query: 1192 -KDVTILKVILASGLYPQV----AIGDEFNTSET--------VKEALFHCKDKGFVSLHP 1238
++ ++ +L + LYP V + +F + T E F K+ G+V +HP
Sbjct: 1207 AENPKLISAMLCAALYPNVVQVKSPEGKFQKTSTGAVRMQPKSAELKFVTKNDGYVHIHP 1266
Query: 1239 FSV 1241
SV
Sbjct: 1267 SSV 1269
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 978 NFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGA 1031
+ GA+ ER+T LG L+ LPVD+ +GK+++FGS+F +D L + +L F +
Sbjct: 1042 DLGALTPDERLTPLGYHLASLPVDVRIGKLMLFGSIFRCLDPALTIAASLAFKS 1095
>sp|Q8VHK9|DHX36_MOUSE Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36
PE=2 SV=2
Length = 1001
Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 198/339 (58%), Gaps = 7/339 (2%)
Query: 424 ERGDVLIFMSGISEISSIVRA-AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRK 482
E G +L+F+ G IS++ + KS ++++PLHS + Q +VF P G+RK
Sbjct: 480 EDGAILVFLPGWDNISTLHDLLMSQVMFKSDKFLIIPLHSLMPTVNQTQVFKKTPPGVRK 539
Query: 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542
+++TNIAETSITID + +V+D GK+KE +D +ST+ W+SKA+A+QRKGRAGR
Sbjct: 540 IVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWVSKANAKQRKGRAGRV 599
Query: 543 GPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPAEN 600
PG CY LY+ + SLL +Y PEI R ++ L L + + LG + F ++ P E
Sbjct: 600 QPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEA 659
Query: 601 IESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
+ S++ L + A+D +E +T LG L+ LPV+ +GKM++FG++F +D VL++AA LS
Sbjct: 660 VVLSIKHLMELSALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLS 719
Query: 661 VQSPFTNRAFRDPDCETARKEL-ESNHGDPLTVLNAYKEWLGVKKDRVRSKK-WCKRRGI 718
+ PF ++ + RKEL + D LTV+NA++ W K+ R +K +C +
Sbjct: 720 FKDPFVIPLGKEKIADARRKELAKETRSDHLTVVNAFEGWEEAKRRGFRYEKDYCWEYFL 779
Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLIT--DIPGPDASLSS 755
+ ++ QF + L +G ++ P A+++S
Sbjct: 780 SSNTLQMLHNMKGQFAEHLLGAGFVSSRSPKDPKANINS 818
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPA 866
R PG CY LY+ + SLL +Y PEI R ++ L L + + LG + F ++ P
Sbjct: 598 RVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSN 657
Query: 867 ENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLA 926
E + S++ L + A+D +E +T LG L+ LPV+ +GKM++FG++F +D +L + +
Sbjct: 658 EAVVLSIKHLMELSALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAAS 717
Query: 927 LNF 929
L+F
Sbjct: 718 LSF 720
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 78/131 (59%), Gaps = 10/131 (7%)
Query: 18 DFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV- 76
D ++K+ ++++ + LP ++E+++ + +V +I+G+TGCGK+TQ+ Q+++
Sbjct: 180 DLQRKKTDPRYIEMQRFRKKLPSYGMQKELVNLINNHQVTVISGETGCGKTTQVTQFILD 239
Query: 77 ------QAGFQRIACTQPRRIACISLSKRVAYETLSQ--YSNLVGYQIRFEKH-RREKTK 127
+ RI CTQPRRI+ IS+++RVA E N GYQIR + R++
Sbjct: 240 NYIERGKGSACRIVCTQPRRISAISVAERVATERAESCGNGNSTGYQIRLQSRLPRKQGS 299
Query: 128 IVFITEGLLLR 138
I++ T G++L+
Sbjct: 300 ILYCTTGIILQ 310
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 311 VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 370
+ +D+ LSS +VLDEIHER+L D L+ VIK LLH +++K+ILMSAT+N E F YF
Sbjct: 312 LQSDSRLSSVSHIVLDEIHERNLQSDVLMTVIKDLLHFRSDLKVILMSATLNAEKFSEYF 371
Query: 371 NRIAKIIKVPGRLYPIQLEY 390
+I +PG +P+ +EY
Sbjct: 372 GN-CPMIHIPGFTFPV-VEY 389
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 44/60 (73%)
Query: 1116 VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 1175
+ +D+ LSS +VLDEIHER+L D L+ VIK LLH +++K+ILMSAT+N E F YF
Sbjct: 312 LQSDSRLSSVSHIVLDEIHERNLQSDVLMTVIKDLLHFRSDLKVILMSATLNAEKFSEYF 371
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 152/391 (38%), Gaps = 105/391 (26%)
Query: 937 RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLS 996
R+ + FLS L +D P + +V S+ H L++L+ A+D +E +T LG L+
Sbjct: 640 RLGGIAYFLSRL-MDPPSNEAVVL-SIKH------LMELS----ALDKQEELTPLGVHLA 687
Query: 997 DLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGK 1056
LPV+ +GKM++FG++F +D +L + +L+F P IPLGK
Sbjct: 688 RLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKD-----------------PFVIPLGK 730
Query: 1057 MLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEEAGERLESMDANEVEFRLKHDPKQVQV 1116
+ + ++ D L V+ E EE A FR + D
Sbjct: 731 EKIADARRKELAKETRSD-HLTVVNAFEGWEE-----------AKRRGFRYEKD-----Y 773
Query: 1117 AADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
+ FLSS + +L ++ G F ++ S+
Sbjct: 774 CWEYFLSSNTLQML-----HNMKGQFAEHLLGAGFVSS---------------------- 806
Query: 1177 RIAKDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSL 1236
R KD + + + K I+K ++ +GLYP+VA N + K H K G VS+
Sbjct: 807 RSPKDPKANINSDNEK---IIKAVICAGLYPKVA-KIRLNLGKKRKMVKVHTKSDGLVSI 862
Query: 1237 HPFSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLR 1296
HP SV Q D + L+Y + TS +L +C
Sbjct: 863 HPKSVNVEQTDF-------------------------HYNWLIYHLKMRTSSIYLYDCTE 897
Query: 1297 MPALQTLLLFSS--AIHTNSDFTRLVFDSWI 1325
+ LL F +I + D + D WI
Sbjct: 898 VSPY-CLLFFGGDISIQKDKDQEIIAVDEWI 927
Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 228 VATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
+ +D+ LSS ++LDE+HER+L D L+ VI LH
Sbjct: 312 LQSDSRLSSVSHIVLDEIHERNLQSDVLMTVIKDLLH 348
>sp|Q9HDY4|YK16_SCHPO Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAPB1A10.06c PE=3
SV=1
Length = 1183
Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 153/520 (29%), Positives = 248/520 (47%), Gaps = 104/520 (20%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV----------KIILMSA 359
E+++D L++Y +++DE HER ++ D LLG++ ++ E+ K+I+MSA
Sbjct: 506 ELSSDFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRLRREMSKSDQKVKPLKLIIMSA 565
Query: 360 TINIELFHT---YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSII 416
T+ + F F+ IIK+ R YP+ + ++ + D + + D + +I
Sbjct: 566 TLRVTDFSENKLLFSVPPPIIKIDARQYPVSIHFNRTTKPDYLQ-DAFDK------VCLI 618
Query: 417 DKKYPRTERGDVLIFMSGISEISSIVRAAQE----------------------------- 447
K+ P G +L+F++G E+ + + ++
Sbjct: 619 HKRLPA---GSILVFLTGQQEVEQLCQMLRKRFVRSFRPLKSRARIVVSRKTMSVENEDL 675
Query: 448 -------------------YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
Y+++S+ VLPL+S L+ E+Q +VF +PEG R CIV+TN
Sbjct: 676 QSETEDIDQVPTSSSSSVTYDDESEPMYVLPLYSLLTTEDQMKVFDSSPEGHRMCIVATN 735
Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
+AETSITI IR+VVD GK KE Y+ + + WISKA+A+QR GRAGRTGPG CY
Sbjct: 736 VAETSITIPNIRYVVDCGKAKERVYNEKTSVQKFEVRWISKANADQRAGRAGRTGPGHCY 795
Query: 549 RLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
RLYS + S +S PEI R ++S++L + M + ++ FPF +P +E S++
Sbjct: 796 RLYSSAVFDSSFPLHSLPEILRTPVESIVLQMKNMNIDNIANFPFPTSPGRSRLEKSLKL 855
Query: 608 LTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTN 667
L+ GAIDS+ +T LG +S P+ KML+ G + V++L + LS+ F +
Sbjct: 856 LSNLGAIDSEGVLTKLGEQMSLFPLSPRFSKMLIIGQQHGCLPYVIALVSALSINQLFVS 915
Query: 668 RA--FRDPDCETAR------------KELESNHGDPLTVLNAYKEWLGVKKD-------- 705
+ D + +R K+ E NA + + D
Sbjct: 916 KQSLLYDAHDKNSRSEETDLIDDDEIKQKEEYKNRMRGYFNAISRFQAIDPDAPALSLLS 975
Query: 706 -------RVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLG 738
+K+CK + E+ EVT LR KQ++G
Sbjct: 976 AVCAYDYASDKRKFCKENYLREKALEEVTNLR---KQIIG 1012
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 79/118 (66%), Gaps = 9/118 (7%)
Query: 30 KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR------- 82
+I+E++ +LP+ +Q I++ + VVII G TG GK+TQ+PQ+L +AGF
Sbjct: 390 EIQESRLALPIVAEEQRIMEQIFANDVVIICGATGSGKTTQLPQFLFEAGFSSPESENPG 449
Query: 83 -IACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQ 139
IA TQPRR+A +S++KRV+ E L+ +S+ V YQIRF+ T I F+T+G+LLR+
Sbjct: 450 MIAITQPRRVAAVSIAKRVS-EELTGFSSKVSYQIRFDSTINPDTAIKFMTDGILLRE 506
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RTGPG CYRLYS + S +S PEI R ++S++L + M + ++ FPF +P
Sbjct: 788 RTGPGHCYRLYSSAVFDSSFPLHSLPEILRTPVESIVLQMKNMNIDNIANFPFPTSPGRS 847
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
+E S++ L+ GAIDS+ +T LG +S P+ KML+ G + ++ L AL
Sbjct: 848 RLEKSLKLLSNLGAIDSEGVLTKLGEQMSLFPLSPRFSKMLIIGQQHGCLPYVIALVSAL 907
Query: 928 NFGAI 932
+ +
Sbjct: 908 SINQL 912
Score = 40.8 bits (94), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 10/67 (14%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV----------KIILMSA 1164
++++D L++Y +++DE HER ++ D LLG++ ++ E+ K+I+MSA
Sbjct: 506 ELSSDFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRLRREMSKSDQKVKPLKLIIMSA 565
Query: 1165 TINIELF 1171
T+ + F
Sbjct: 566 TLRVTDF 572
>sp|Q5RBD4|DHX35_PONAB Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35
PE=2 SV=1
Length = 720
Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/445 (30%), Positives = 231/445 (51%), Gaps = 32/445 (7%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E+ D L+ Y V++LDE HER L+ D +G++K + ++++I+ SAT++ + F +
Sbjct: 160 EMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVASATLDADKFRDF 219
Query: 370 FNR---------IAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKY 420
FN+ I+ V GR +P+ + Y D KS + + K +
Sbjct: 220 FNQNETSDPARDTCVILTVGGRTFPVDIFYLQSPVPDYIKS----------TVETVVKIH 269
Query: 421 PRTERGDVLIFMSGISEISSIV-------RAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF 473
GD+L F++G E+ ++V RA K VLP+++ L EQ +VF
Sbjct: 270 QTEGDGDILAFLTGQEEVETVVSMLIEQARALARTGMKRH-LRVLPMYAGLPSFEQMKVF 328
Query: 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAE 533
+RK IV+TN+AETSITI GI +V+D G VK +Y+ + L +S+ASA
Sbjct: 329 ERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASAN 388
Query: 534 QRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFL 593
QR GR GR+ G CYRLY+EE + L + + PE++R ++ ++L L +G+ +V +F F+
Sbjct: 389 QRAGRGGRSRSGKCYRLYTEEAFDKLPQSTVPEMQRSNLAPVILQLKALGIDNVLRFHFM 448
Query: 594 EAPPAENIESSVRSLTQHGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTV 652
PPA+++ ++ L G +D R+T LG +++ P++ KML+ F +
Sbjct: 449 SPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEI 508
Query: 653 LSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKW 712
LS+AA++ +Q+ F + ++ GD LT+LN Y+ ++ K+ +W
Sbjct: 509 LSIAAMMQIQNIFVVPPNQKSQAIRVHRKFAVEEGDHLTMLNVYEAFIKHNKN----SQW 564
Query: 713 CKRRGIEEQRFYEVTKLRSQFKQVL 737
C+ + + +R Q K++L
Sbjct: 565 CQEHFLNYKGLVRAATVREQLKKLL 589
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 75/116 (64%), Gaps = 5/116 (4%)
Query: 29 MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIA 84
+ I + + LPV + + I+ + + V+I G+TGCGKSTQIPQYL +AG+ + +
Sbjct: 45 LSIEQQRQKLPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVG 104
Query: 85 CTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRRE-KTKIVFITEGLLLRQ 139
TQPRR+A ++++ RVA E + + VGY IRF+ + T+I F+T+G+L+R+
Sbjct: 105 VTQPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVRE 160
Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 808 SRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
R+ G CYRLY+EE + L + + PE++R ++ ++L L +G+ +V +F F+ PPA+
Sbjct: 395 GRSRSGKCYRLYTEEAFDKLPQSTVPEMQRSNLAPVILQLKALGIDNVLRFHFMSPPPAQ 454
Query: 868 NIESSVRSLTQHGAIDSKERVT-TLGRFLSDLPVDIPLGKMLVFGSMF 914
++ ++ L G +D R+T LG +++ P++ KML+ F
Sbjct: 455 SMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNF 502
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 41/63 (65%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
++ D L+ Y V++LDE HER L+ D +G++K + ++++I+ SAT++ + F +
Sbjct: 160 EMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVASATLDADKFRDF 219
Query: 1175 FNR 1177
FN+
Sbjct: 220 FNQ 222
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLGVI 259
++ D L+ Y +++LDE HER LY D +G++
Sbjct: 160 EMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLL 192
>sp|Q6P5D3|DHX57_MOUSE Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57
PE=2 SV=2
Length = 1388
Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 196/344 (56%), Gaps = 16/344 (4%)
Query: 415 IIDKK--YPRTERGDVLIFMSGISEISSIVRAAQEY----NEKSQGWIVLPLHSTLSLEE 468
I+D K YP G VL+F+ G++EI + Q N +S ++ PLHS+LS EE
Sbjct: 840 IVDGKHAYPP---GAVLVFLPGLAEIKMLYEQLQSNSLFNNRRSHRCVIHPLHSSLSSEE 896
Query: 469 QDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWIS 528
Q VF P G+ K I+STNIAETSITID + +V+DSGK+KE YD M +L++ ++S
Sbjct: 897 QQAVFVKPPMGVTKIIISTNIAETSITIDDVVYVIDSGKMKEKRYDAGKGMESLEDTFVS 956
Query: 529 KASAEQRKGRAGRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDV 587
+A+A QRKGRAGR GVC+ L++ Y+ L + PEI+RV ++ L L + + +
Sbjct: 957 QANALQRKGRAGRVASGVCFHLFTSHHYNHQLLKQQLPEIQRVPLEQLCLRIKILEMFST 1016
Query: 588 RKFP-----FLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVF 642
+E P +++ +S L GA+ E++T LG L+ LPVD+ +GK+++
Sbjct: 1017 HNLQSVFSRLIEPPHIDSLRASKVRLRDLGALTPDEKLTPLGYHLASLPVDVRIGKLMLL 1076
Query: 643 GSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW-LG 701
GS+F +D L++AA L+ +SPF + + + + E + D L +L AYK W L
Sbjct: 1077 GSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKLEFAFANSDYLALLCAYKGWQLS 1136
Query: 702 VKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITD 745
K+ S +C++ + + E+ L+ QF ++L D G + +
Sbjct: 1137 TKESARASYNYCRQNFLSGRTLQEMASLKRQFTELLSDIGFVKE 1180
Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 81/134 (60%), Gaps = 7/134 (5%)
Query: 19 FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA 78
F+ K+ I + + LP + ++ I+ + K +VV+I+G TGCGK+TQIPQ+++
Sbjct: 526 FQMKQASRQFHAILQERQLLPAWEERETILKLLSKHQVVVISGMTGCGKTTQIPQFILDN 585
Query: 79 GF----QRIA---CTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFI 131
+R+A CTQPRRI+ IS+++RVA E + VGYQIR E + T++++
Sbjct: 586 SLNGPPERVANIICTQPRRISAISVAERVAKERAERVGLTVGYQIRLESVKSSATRLLYC 645
Query: 132 TEGLLLRQDSGLIT 145
T G+LLR+ G T
Sbjct: 646 TTGVLLRRLEGDAT 659
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 809 RTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFP-----FLE 862
R GVC+ L++ Y+ L + PEI+RV ++ L L + + + +E
Sbjct: 969 RVASGVCFHLFTSHHYNHQLLKQQLPEIQRVPLEQLCLRIKILEMFSTHNLQSVFSRLIE 1028
Query: 863 APPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLL 922
P +++ +S L GA+ E++T LG L+ LPVD+ +GK+++ GS+F +D L
Sbjct: 1029 PPHIDSLRASKVRLRDLGALTPDEKLTPLGYHLASLPVDVRIGKLMLLGSIFRCLDPALT 1088
Query: 923 LDLALNF 929
+ +L F
Sbjct: 1089 IAASLAF 1095
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 313 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR 372
D L +++DE+HER DFLL V+K ++ A +++ILMSAT++ LF YF+
Sbjct: 656 GDATLQGVTHIIVDEVHERTEESDFLLLVLKDIVMQRATLQVILMSATLDAGLFSKYFS- 714
Query: 373 IAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKK 419
+I +PGR +P+ ++ L T+ D PY+R + I K+
Sbjct: 715 YCPVITIPGRAFPVD-QFFLEDALAVTRYVLQDGSPYMRSMKQIAKE 760
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 1115 QVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 1174
++ D L +++DE+HER DFLL V+K ++ A +++ILMSAT++ LF Y
Sbjct: 653 RLEGDATLQGVTHIIVDEVHERTEESDFLLLVLKDIVMQRATLQVILMSATLDAGLFSKY 712
Query: 1175 FN 1176
F+
Sbjct: 713 FS 714
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 131/332 (39%), Gaps = 76/332 (22%)
Query: 1028 NFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHH--SEE 1085
+ GA+ E++T LG L+ LPVD+ +GK+++ GS+F +D L + +L F S
Sbjct: 1044 DLGALTPDEKLTPLGYHLASLPVDVRIGKLMLLGSIFRCLDPALTIAASLAFKSPFVSPW 1103
Query: 1086 EEEEEAGE-RLESMDANEVEFRLKHDPKQVQVAA-DNFLSSYDVLVLDEIHERHLHGDFL 1143
+++EEA + +LE AN L K Q++ ++ +SY+ + +FL
Sbjct: 1104 DKKEEANQKKLEFAFANSDYLALLCAYKGWQLSTKESARASYN----------YCRQNFL 1153
Query: 1144 LGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDL------------LSGSTARSH 1191
G L A +K +I AK++ +G A ++
Sbjct: 1154 SGRT---LQEMASLKRQFTELLSDIGFVKEGLR--AKEIEKRAQGGDGVLDATGEEANTN 1208
Query: 1192 -KDVTILKVILASGLYPQVAI-----GDEFNTSETV-------KEALFHCKDKGFVSLHP 1238
++ ++ +L + LYP V G TS V E F K+ G+V +HP
Sbjct: 1209 AENPKLISAVLCAALYPNVVQVKTPEGKFQKTSSGVVRLQPKSAELKFVTKNDGYVHIHP 1268
Query: 1239 FSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMP 1298
SV V L+Y ++TS+ F+ +C M
Sbjct: 1269 SSV-------------------------NYQVRHFDSPYLLYHEKIKTSRVFIRDC-SMV 1302
Query: 1299 ALQTLLLFSSAIHTNSDFTRLVF-----DSWI 1325
++ L+LF N R F D WI
Sbjct: 1303 SVYPLVLFGGG-QVNVQLQRGAFVVSLDDGWI 1333
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 978 NFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNF 1029
+ GA+ E++T LG L+ LPVD+ +GK+++ GS+F +D L + +L F
Sbjct: 1044 DLGALTPDEKLTPLGYHLASLPVDVRIGKLMLLGSIFRCLDPALTIAASLAF 1095
>sp|Q6PGC1|DHX29_MOUSE ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1
Length = 1365
Score = 210 bits (535), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 163/542 (30%), Positives = 274/542 (50%), Gaps = 58/542 (10%)
Query: 273 DYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHS---------TVEVAADNFLS----- 318
D L+ +++DE+HER + DFLL ++K +L + V +D F +
Sbjct: 689 DGLLADVSHVIVDEVHERSVQSDFLLVILKEILQKRSDLHLILMSATVDSDKFSTYFTHC 748
Query: 319 --------SYDVLV--LDEIHERHLHGDFLLG----VIKCLLHSTAEVKIILMSATINIE 364
SY V V L++I E F+L + L E+ I + S ++
Sbjct: 749 PILRISGRSYPVEVFHLEDIVE---ETGFVLEKDSEYCQKFLEEEEEITINVTSKAGGVK 805
Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEY-----HPIVELDRTKSEKLDPGPYIRILSIIDKK 419
+ Y I L P +Y H I+ ++ K++ + +L +DK
Sbjct: 806 KYQEY---IPVQSGASPELNPFYQKYSSRTQHAILYMN---PHKINLDLILELLVYLDKS 859
Query: 420 YP-RTERGDVLIFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFH 474
R G VLIF+ G++ I + Y+E+ Q V+ LHS LS ++Q F
Sbjct: 860 PQFRNIEGAVLIFLPGLAHIQQLYDLLSSDRRFYSERYQ---VIALHSVLSTQDQAAAFM 916
Query: 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQ 534
+ P G+RK +++TNIAET ITI + FV+D+G+ KE Y +++MS+L E ++SKASA Q
Sbjct: 917 FPPPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASALQ 976
Query: 535 RKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PF 592
R+GRAGR G C+RLY+ E++ +YS PEI RV ++ L L ++ LG F
Sbjct: 977 RQGRAGRVRDGFCFRLYTRERFEGFLDYSVPEILRVPLEELCLHIMKCDLGSPEDFLSKA 1036
Query: 593 LEAPPAENIESSVRSLTQHGAIDSKE-RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDT 651
L+ P + I +++ L + GA + E ++T LG+ L+ LPV++ +GKML+FG++F ++
Sbjct: 1037 LDPPQLQVISNAMNLLRKIGACEPNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLEP 1096
Query: 652 VLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKD-RVRSK 710
V +LAAV++ +SPF R + + A+ L D LT+ NAY W +++ RS+
Sbjct: 1097 VATLAAVMTEKSPFITPIGRKDEADLAKSSLAVADSDHLTIYNAYLGWKKAQQEGGFRSE 1156
Query: 711 -KWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQ 769
+C+R + + ++ + +++ +G + P + L +I LL+
Sbjct: 1157 ISYCQRNFLNRTSLLTLEDVKQELMKLVKAAGFSS---SPSWEGRKGPQTLSFQDIALLK 1213
Query: 770 AI 771
A+
Sbjct: 1214 AV 1215
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 87/139 (62%), Gaps = 18/139 (12%)
Query: 24 KFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQY------LVQ 77
K+ L+K R+ LPV +++ I++T+ + RVV++AG+TG GKSTQ+P + L +
Sbjct: 560 KYQRLLKERQ---QLPVFKHRDSIVETLKRHRVVVVAGETGSGKSTQVPHFLLEDLLLDE 616
Query: 78 AGFQR--IACTQPRRIACISLSKRVAYETLSQ-----YSNLVGYQIRFEKHRREKTKIVF 130
G ++ I CTQPRRI+ +SL+ RV E + ++L GYQIR E E T++++
Sbjct: 617 CGARKCNIVCTQPRRISAVSLATRVCEELGCESGPGGRNSLCGYQIRMESRASESTRLLY 676
Query: 131 ITEGLLLR--QDSGLITDI 147
T G+LLR Q+ GL+ D+
Sbjct: 677 CTTGVLLRKLQEDGLLADV 695
Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPA 866
R G C+RLY+ E++ +YS PEI RV ++ L L ++ LG F L+ P
Sbjct: 983 RVRDGFCFRLYTRERFEGFLDYSVPEILRVPLEELCLHIMKCDLGSPEDFLSKALDPPQL 1042
Query: 867 ENIESSVRSLTQHGAIDSKE-RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
+ I +++ L + GA + E ++T LG+ L+ LPV++ +GKML+FG++F ++ + L
Sbjct: 1043 QVISNAMNLLRKIGACEPNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLEPVATL 1100
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 1178
D L+ +++DE+HER + DFLL ++K +L +++ +ILMSAT++ + F TYF
Sbjct: 689 DGLLADVSHVIVDEVHERSVQSDFLLVILKEILQKRSDLHLILMSATVDSDKFSTYFTHC 748
Query: 1179 AKDLLSGST 1187
+SG +
Sbjct: 749 PILRISGRS 757
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 112/271 (41%), Gaps = 64/271 (23%)
Query: 973 LDLALNFGAIDSKE-RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGA 1031
++L GA + E ++T LG+ L+ LPV++ +GKML+FG++F ++ + L +
Sbjct: 1049 MNLLRKIGACEPNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLEPVATLAAVMT--- 1105
Query: 1032 IDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEEA 1091
+ +T +GR D+ + V S D + + + L + ++ ++E
Sbjct: 1106 -EKSPFITPIGR---KDEADLAKSSLAVADS-----DHLTIYNAYLGW-----KKAQQEG 1151
Query: 1092 GERLESMDANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL 1151
G R E + NFL+ +L L+++ + L+ ++K
Sbjct: 1152 GFRSE-----------------ISYCQRNFLNRTSLLTLEDVKQE------LMKLVKAAG 1188
Query: 1152 HSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVTILKVILASGLYPQVA- 1210
S++ ++ R G S +D+ +LK +LA+GLY V
Sbjct: 1189 FSSSP----------------SWEGR------KGPQTLSFQDIALLKAVLAAGLYDSVGK 1226
Query: 1211 IGDEFNTSETVKEALFHCKDKGFVSLHPFSV 1241
I + T K A +G +HP SV
Sbjct: 1227 IMCTKSVDVTEKLACMVETAQGKAQVHPSSV 1257
Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 923 LDLALNFGAIDSKE-RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 973
++L GA + E ++T LG+ L+ LPV++ +GKML+FG++F ++ + L
Sbjct: 1049 MNLLRKIGACEPNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLEPVATL 1100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,623,134
Number of Sequences: 539616
Number of extensions: 21952712
Number of successful extensions: 107991
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 104373
Number of HSP's gapped (non-prelim): 2947
length of query: 1417
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1287
effective length of database: 121,419,379
effective search space: 156266740773
effective search space used: 156266740773
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)