Query psy3476
Match_columns 1417
No_of_seqs 688 out of 3914
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 17:41:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922|consensus 100.0 5E-115 1E-119 1031.2 50.5 565 20-772 32-604 (674)
2 KOG0923|consensus 100.0 1E-111 3E-116 984.7 44.0 566 25-778 251-826 (902)
3 KOG0924|consensus 100.0 9E-110 2E-114 967.7 45.5 564 25-777 342-914 (1042)
4 KOG0920|consensus 100.0 5E-106 1E-110 1001.8 45.7 554 20-745 154-740 (924)
5 KOG0925|consensus 100.0 2E-102 4E-107 883.3 40.0 584 16-790 24-623 (699)
6 COG1643 HrpA HrpA-like helicas 100.0 1.4E-95 3E-100 914.6 50.1 568 24-773 35-636 (845)
7 PRK11131 ATP-dependent RNA hel 100.0 9.7E-95 2.1E-99 933.3 55.6 559 32-773 67-635 (1294)
8 KOG0926|consensus 100.0 4.9E-94 1.1E-98 848.0 41.5 541 26-742 243-921 (1172)
9 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.5E-92 3.2E-97 916.8 54.7 559 31-772 59-625 (1283)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.5E-76 3.2E-81 755.2 45.5 444 38-665 1-447 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 9.1E-74 2E-78 731.4 45.2 441 37-661 3-448 (812)
12 KOG0921|consensus 100.0 3.6E-64 7.9E-69 600.0 30.2 565 26-742 365-966 (1282)
13 PHA02653 RNA helicase NPH-II; 100.0 4.5E-52 9.7E-57 519.8 35.6 300 315-645 287-595 (675)
14 KOG0922|consensus 100.0 2.9E-55 6.2E-60 522.1 5.4 212 795-1006 363-582 (674)
15 KOG0924|consensus 100.0 6.3E-54 1.4E-58 501.2 6.3 212 795-1006 670-888 (1042)
16 KOG0925|consensus 100.0 5.4E-51 1.2E-55 464.0 4.6 215 795-1012 360-582 (699)
17 KOG0923|consensus 100.0 1.4E-49 3E-54 465.6 9.8 212 795-1006 579-798 (902)
18 PRK11131 ATP-dependent RNA hel 100.0 2.3E-46 4.9E-51 485.1 7.0 212 793-1004 382-610 (1294)
19 TIGR01967 DEAH_box_HrpA ATP-de 100.0 7.6E-44 1.7E-48 463.5 7.4 208 793-1000 375-597 (1283)
20 PRK01172 ski2-like helicase; P 100.0 1.6E-38 3.4E-43 407.2 42.6 554 38-792 21-633 (674)
21 PRK02362 ski2-like helicase; P 100.0 7.1E-37 1.5E-41 394.8 45.4 450 315-789 133-670 (737)
22 PRK00254 ski2-like helicase; P 100.0 4.5E-35 9.7E-40 377.3 42.2 448 315-790 134-664 (720)
23 COG1643 HrpA HrpA-like helicas 100.0 2.2E-37 4.8E-42 390.1 8.8 209 794-1002 359-591 (845)
24 KOG0330|consensus 100.0 1.1E-34 2.3E-39 325.8 21.8 310 42-559 86-412 (476)
25 KOG0926|consensus 100.0 3.5E-36 7.6E-41 358.0 6.2 204 793-996 675-917 (1172)
26 PRK11776 ATP-dependent RNA hel 100.0 3.4E-33 7.4E-38 343.4 30.7 205 316-558 144-353 (460)
27 KOG0331|consensus 100.0 1.4E-33 3.1E-38 336.8 24.7 213 315-558 235-452 (519)
28 PRK04837 ATP-dependent RNA hel 100.0 1.4E-32 3E-37 334.6 31.7 309 41-559 32-367 (423)
29 PTZ00110 helicase; Provisional 100.0 1.2E-32 2.5E-37 343.6 30.1 207 316-558 274-488 (545)
30 PRK11192 ATP-dependent RNA hel 100.0 3.3E-32 7.1E-37 332.4 32.9 313 40-560 24-358 (434)
31 PLN00206 DEAD-box ATP-dependen 100.0 2.2E-32 4.7E-37 339.9 31.5 209 315-559 266-480 (518)
32 PRK10590 ATP-dependent RNA hel 100.0 3.5E-32 7.6E-37 333.7 30.8 206 316-559 146-357 (456)
33 COG0513 SrmB Superfamily II DN 100.0 2.4E-32 5.3E-37 337.9 29.5 312 40-559 52-386 (513)
34 PRK11634 ATP-dependent RNA hel 100.0 5.9E-32 1.3E-36 340.5 31.5 312 39-558 28-356 (629)
35 PRK04537 ATP-dependent RNA hel 100.0 6.6E-32 1.4E-36 338.0 30.6 313 40-559 32-369 (572)
36 COG1204 Superfamily II helicas 100.0 6E-31 1.3E-35 334.0 33.2 417 295-733 124-630 (766)
37 PTZ00424 helicase 45; Provisio 100.0 6.4E-31 1.4E-35 317.6 30.5 208 316-560 167-380 (401)
38 PRK01297 ATP-dependent RNA hel 100.0 5.8E-31 1.3E-35 324.8 30.1 206 315-558 233-446 (475)
39 KOG0345|consensus 100.0 1.6E-31 3.5E-36 306.1 23.1 326 40-570 29-383 (567)
40 KOG0342|consensus 100.0 4.8E-31 1E-35 304.6 22.7 320 38-558 103-441 (543)
41 COG1202 Superfamily II helicas 100.0 2.7E-30 5.9E-35 300.3 29.1 328 294-659 316-678 (830)
42 KOG0920|consensus 100.0 2.1E-33 4.5E-38 352.1 1.0 358 795-1356 517-894 (924)
43 KOG0333|consensus 100.0 1.7E-30 3.8E-35 300.1 20.0 203 317-557 394-627 (673)
44 KOG0343|consensus 100.0 3.4E-30 7.4E-35 298.5 22.0 317 36-558 88-426 (758)
45 KOG0340|consensus 100.0 1.1E-29 2.4E-34 282.7 22.6 317 42-559 32-366 (442)
46 TIGR03817 DECH_helic helicase/ 100.0 3.4E-29 7.4E-34 321.1 29.9 215 316-552 154-384 (742)
47 KOG0338|consensus 100.0 1.2E-29 2.6E-34 291.9 20.5 310 42-559 206-538 (691)
48 TIGR00614 recQ_fam ATP-depende 100.0 1E-28 2.2E-33 304.1 29.8 209 316-560 124-339 (470)
49 KOG0328|consensus 100.0 3.3E-29 7.1E-34 271.0 21.2 207 317-560 167-379 (400)
50 PLN03137 ATP-dependent DNA hel 100.0 4.3E-28 9.2E-33 308.8 28.7 205 319-559 581-792 (1195)
51 PRK11057 ATP-dependent DNA hel 100.0 3.9E-28 8.3E-33 306.9 27.7 205 318-560 138-349 (607)
52 KOG0952|consensus 100.0 3.1E-28 6.7E-33 299.4 25.5 369 294-679 212-655 (1230)
53 KOG0332|consensus 100.0 1.6E-28 3.5E-33 274.7 20.2 322 23-554 108-443 (477)
54 PRK13767 ATP-dependent helicas 100.0 3.2E-27 7E-32 308.5 34.1 211 316-552 169-398 (876)
55 KOG0335|consensus 100.0 1.7E-28 3.6E-33 288.9 18.2 307 42-552 99-442 (482)
56 KOG0336|consensus 100.0 3.7E-28 8E-33 272.9 19.6 211 315-559 363-577 (629)
57 KOG0326|consensus 100.0 2.7E-28 5.9E-33 267.5 14.9 322 28-559 97-434 (459)
58 KOG0348|consensus 100.0 1.4E-27 3.1E-32 276.4 20.0 326 41-557 161-557 (708)
59 TIGR01389 recQ ATP-dependent D 100.0 8.9E-27 1.9E-31 294.8 27.6 206 317-560 125-337 (591)
60 KOG0347|consensus 100.0 1.6E-28 3.5E-33 284.9 10.5 112 424-558 462-574 (731)
61 KOG0339|consensus 99.9 6.6E-27 1.4E-31 268.9 21.0 208 315-557 366-578 (731)
62 TIGR01970 DEAH_box_HrpB ATP-de 99.9 2.1E-28 4.4E-33 313.9 8.2 156 794-966 308-463 (819)
63 TIGR00580 mfd transcription-re 99.9 5.6E-26 1.2E-30 294.3 30.1 210 295-553 556-769 (926)
64 PRK10917 ATP-dependent DNA hel 99.9 4.3E-26 9.4E-31 291.3 27.6 210 295-552 366-587 (681)
65 COG1201 Lhr Lhr-like helicases 99.9 1.2E-25 2.6E-30 282.2 26.7 285 294-610 124-438 (814)
66 TIGR00643 recG ATP-dependent D 99.9 2.2E-25 4.7E-30 283.1 28.3 212 295-551 340-563 (630)
67 PRK09751 putative ATP-dependen 99.9 2.1E-25 4.5E-30 295.5 27.3 231 295-548 101-379 (1490)
68 TIGR01587 cas3_core CRISPR-ass 99.9 1.4E-25 3E-30 267.4 22.8 201 320-554 125-336 (358)
69 TIGR02621 cas3_GSU0051 CRISPR- 99.9 2.8E-25 6.2E-30 280.3 26.6 188 315-544 167-379 (844)
70 KOG0951|consensus 99.9 6.8E-25 1.5E-29 272.2 24.1 365 317-700 435-892 (1674)
71 PRK10689 transcription-repair 99.9 2.4E-24 5.2E-29 284.5 29.9 195 316-552 719-917 (1147)
72 PRK11664 ATP-dependent RNA hel 99.9 1.5E-26 3.2E-31 297.5 7.5 136 795-930 312-449 (812)
73 KOG0350|consensus 99.9 7.8E-25 1.7E-29 252.7 19.6 118 423-559 427-545 (620)
74 KOG0341|consensus 99.9 3.4E-25 7.4E-30 247.7 11.4 204 317-556 324-530 (610)
75 KOG0334|consensus 99.9 3E-24 6.6E-29 267.7 20.1 317 39-557 387-723 (997)
76 KOG4284|consensus 99.9 3.2E-24 6.9E-29 252.0 18.5 313 42-555 50-380 (980)
77 KOG0346|consensus 99.9 4.7E-24 1E-28 243.0 18.5 207 316-557 167-413 (569)
78 KOG0921|consensus 99.9 5.4E-26 1.2E-30 274.1 0.2 585 30-790 397-1014(1282)
79 COG1111 MPH1 ERCC4-like helica 99.9 6.5E-23 1.4E-27 239.5 24.7 120 414-554 355-481 (542)
80 COG0514 RecQ Superfamily II DN 99.9 2.3E-23 5E-28 253.8 21.8 201 319-557 131-340 (590)
81 KOG0327|consensus 99.9 2.4E-23 5.1E-28 236.2 19.8 207 317-560 167-376 (397)
82 PHA02558 uvsW UvsW helicase; P 99.9 2.2E-22 4.9E-27 249.6 26.7 100 424-546 343-443 (501)
83 TIGR03158 cas3_cyano CRISPR-as 99.9 5.4E-22 1.2E-26 236.2 28.2 187 316-540 142-357 (357)
84 KOG0354|consensus 99.9 2.9E-22 6.4E-27 246.3 24.9 127 411-556 399-531 (746)
85 KOG0948|consensus 99.9 4E-23 8.6E-28 246.5 15.3 324 40-554 130-539 (1041)
86 KOG0344|consensus 99.9 6.9E-23 1.5E-27 242.6 16.3 231 295-558 264-499 (593)
87 PRK13766 Hef nuclease; Provisi 99.9 2.3E-21 5.1E-26 253.2 27.9 110 423-555 363-480 (773)
88 TIGR03714 secA2 accessory Sec 99.9 2.5E-21 5.5E-26 242.7 26.7 167 352-555 360-538 (762)
89 PRK12898 secA preprotein trans 99.9 6.1E-21 1.3E-25 236.9 28.1 168 352-555 409-587 (656)
90 COG1205 Distinct helicase fami 99.9 2.5E-21 5.4E-26 249.9 23.8 330 35-552 66-420 (851)
91 COG4581 Superfamily II RNA hel 99.9 2.7E-21 6E-26 245.9 23.6 330 36-552 116-535 (1041)
92 KOG0947|consensus 99.9 2.4E-21 5.3E-26 236.4 20.1 329 38-554 296-723 (1248)
93 PRK09200 preprotein translocas 99.9 1.1E-20 2.4E-25 239.1 26.7 167 353-555 365-542 (790)
94 PRK09401 reverse gyrase; Revie 99.9 8.6E-21 1.9E-25 251.6 26.7 93 426-540 329-429 (1176)
95 PRK14701 reverse gyrase; Provi 99.9 1.2E-20 2.5E-25 254.9 25.7 117 425-559 330-461 (1638)
96 KOG0337|consensus 99.9 5.2E-21 1.1E-25 217.6 18.0 226 293-557 140-371 (529)
97 PRK09694 helicase Cas3; Provis 99.9 4E-20 8.6E-25 237.9 26.8 108 411-543 548-663 (878)
98 PRK05580 primosome assembly pr 99.8 4.1E-20 8.8E-25 236.0 24.0 227 295-549 243-544 (679)
99 TIGR00963 secA preprotein tran 99.8 1.9E-19 4.2E-24 224.5 28.5 168 352-555 341-518 (745)
100 TIGR00603 rad25 DNA repair hel 99.8 1.1E-19 2.4E-24 228.1 26.4 107 424-557 495-610 (732)
101 KOG0950|consensus 99.8 8.4E-20 1.8E-24 225.5 19.6 222 315-558 337-615 (1008)
102 COG4098 comFA Superfamily II D 99.8 7.7E-19 1.7E-23 196.1 24.2 202 320-550 203-412 (441)
103 TIGR00595 priA primosomal prot 99.8 1.5E-19 3.4E-24 223.3 20.0 225 295-548 78-375 (505)
104 KOG0352|consensus 99.8 1.3E-19 2.8E-24 205.6 15.8 212 319-560 141-368 (641)
105 TIGR01054 rgy reverse gyrase. 99.8 1.7E-18 3.7E-23 230.2 27.5 76 425-517 326-409 (1171)
106 COG1200 RecG RecG-like helicas 99.8 1.1E-18 2.4E-23 212.2 22.3 199 315-554 380-591 (677)
107 KOG0351|consensus 99.8 3.7E-18 8E-23 219.2 18.8 206 320-561 386-599 (941)
108 COG1061 SSL2 DNA or RNA helica 99.8 1.3E-17 2.8E-22 203.8 22.4 96 424-543 282-377 (442)
109 PRK12906 secA preprotein trans 99.7 8E-17 1.7E-21 202.9 23.0 168 352-555 376-554 (796)
110 PRK13104 secA preprotein trans 99.7 8.3E-17 1.8E-21 203.5 21.6 128 352-497 380-509 (896)
111 PRK11448 hsdR type I restricti 99.7 2.8E-16 6E-21 208.0 24.2 117 416-552 689-813 (1123)
112 COG1197 Mfd Transcription-repa 99.7 5.2E-16 1.1E-20 198.2 24.0 196 315-553 712-912 (1139)
113 PRK12904 preprotein translocas 99.7 4.2E-16 9.1E-21 197.2 20.2 128 352-497 366-495 (830)
114 PRK13107 preprotein translocas 99.7 1.9E-15 4.1E-20 190.8 21.0 128 352-497 385-514 (908)
115 PRK04914 ATP-dependent helicas 99.6 7.5E-15 1.6E-19 190.7 22.8 116 416-553 484-604 (956)
116 COG1203 CRISPR-associated heli 99.6 6.1E-15 1.3E-19 190.4 20.3 198 320-552 339-548 (733)
117 KOG0329|consensus 99.6 2.1E-15 4.4E-20 162.4 9.4 170 315-556 181-357 (387)
118 PF04408 HA2: Helicase associa 99.6 6.1E-16 1.3E-20 151.7 2.4 91 871-961 1-102 (102)
119 KOG0353|consensus 99.6 6.2E-14 1.3E-18 157.3 17.0 215 319-557 215-470 (695)
120 PHA02653 RNA helicase NPH-II; 99.5 2.3E-15 5E-20 190.2 4.5 107 794-915 486-597 (675)
121 PRK12899 secA preprotein trans 99.5 3.7E-13 7.9E-18 170.5 23.9 102 40-142 93-201 (970)
122 KOG0349|consensus 99.5 6.7E-14 1.5E-18 159.5 12.6 109 424-552 504-613 (725)
123 PF04408 HA2: Helicase associa 99.5 1.6E-14 3.4E-19 141.8 6.6 91 603-693 1-102 (102)
124 TIGR00631 uvrb excinuclease AB 99.5 2.8E-13 6E-18 171.9 18.0 125 410-554 429-553 (655)
125 COG1198 PriA Primosomal protei 99.5 1.2E-12 2.6E-17 164.9 21.1 228 295-548 298-597 (730)
126 smart00847 HA2 Helicase associ 99.5 1.1E-14 2.4E-19 139.9 1.1 90 871-961 1-92 (92)
127 KOG0949|consensus 99.4 8.5E-12 1.8E-16 154.2 22.6 97 457-570 965-1065(1330)
128 smart00847 HA2 Helicase associ 99.4 3.5E-13 7.6E-18 129.5 5.8 90 603-693 1-92 (92)
129 COG4096 HsdR Type I site-speci 99.4 5.2E-11 1.1E-15 147.5 25.7 154 411-583 408-577 (875)
130 PRK12326 preprotein translocas 99.4 6E-11 1.3E-15 147.5 24.8 167 352-554 363-547 (764)
131 PRK12900 secA preprotein trans 99.3 6.8E-12 1.5E-16 159.5 13.9 169 352-556 534-713 (1025)
132 PF00270 DEAD: DEAD/DEAH box h 99.3 1.4E-11 3.1E-16 130.5 13.9 64 42-105 2-69 (169)
133 TIGR00348 hsdR type I site-spe 99.3 2.3E-11 5.1E-16 156.0 18.5 99 425-542 514-634 (667)
134 KOG0953|consensus 99.3 4.4E-11 9.6E-16 141.5 18.6 119 421-554 353-477 (700)
135 cd00079 HELICc Helicase superf 99.3 9.3E-12 2E-16 125.8 11.1 115 411-550 16-131 (131)
136 cd00268 DEADc DEAD-box helicas 99.3 9.1E-11 2E-15 128.7 16.7 64 39-102 21-91 (203)
137 COG0556 UvrB Helicase subunit 99.3 2.6E-09 5.7E-14 126.5 28.9 124 409-553 432-555 (663)
138 TIGR01407 dinG_rel DnaQ family 99.2 1.2E-09 2.7E-14 144.2 27.8 131 411-550 661-811 (850)
139 PRK13103 secA preprotein trans 99.2 2E-10 4.4E-15 146.0 18.4 128 352-497 385-514 (913)
140 TIGR02562 cas3_yersinia CRISPR 99.2 3.4E-10 7.3E-15 144.9 19.5 95 429-544 760-881 (1110)
141 PF00271 Helicase_C: Helicase 99.2 1.1E-11 2.5E-16 114.9 4.6 73 453-543 6-78 (78)
142 PRK12903 secA preprotein trans 99.2 5.1E-10 1.1E-14 141.0 20.3 166 352-553 362-538 (925)
143 KOG4150|consensus 99.2 2.1E-10 4.5E-15 134.9 14.9 206 319-547 412-633 (1034)
144 PRK05298 excinuclease ABC subu 99.2 9.7E-11 2.1E-15 149.8 11.5 124 410-553 433-556 (652)
145 COG1110 Reverse gyrase [DNA re 99.1 1.3E-08 2.8E-13 128.3 27.9 127 349-508 274-416 (1187)
146 PLN03142 Probable chromatin-re 99.1 3.2E-09 7E-14 139.4 22.3 111 424-557 486-602 (1033)
147 CHL00122 secA preprotein trans 99.1 5.7E-09 1.2E-13 132.5 23.0 128 352-497 360-491 (870)
148 smart00487 DEXDc DEAD-like hel 99.1 2.4E-09 5.3E-14 114.7 16.7 68 38-105 7-79 (201)
149 cd00046 DEXDc DEAD-like helica 99.1 1.7E-09 3.6E-14 109.1 13.9 84 55-140 1-94 (144)
150 PF07717 OB_NTP_bind: Oligonuc 99.0 2.9E-11 6.4E-16 121.0 -1.4 82 1192-1310 32-114 (114)
151 PRK12902 secA preprotein trans 99.0 1.9E-08 4.1E-13 127.6 22.4 128 352-497 375-506 (939)
152 smart00490 HELICc helicase sup 99.0 6.3E-10 1.4E-14 102.9 5.9 80 441-543 3-82 (82)
153 KOG0951|consensus 98.9 1E-08 2.2E-13 130.4 14.8 234 294-555 1235-1495(1674)
154 PRK07246 bifunctional ATP-depe 98.9 5.9E-07 1.3E-11 117.9 31.6 154 411-579 635-815 (820)
155 PF07652 Flavi_DEAD: Flaviviru 98.7 3.3E-08 7.2E-13 101.5 9.5 82 52-140 2-87 (148)
156 PF04851 ResIII: Type III rest 98.7 3.1E-08 6.7E-13 106.0 8.6 62 38-100 2-70 (184)
157 KOG1123|consensus 98.7 2.3E-07 4.9E-12 109.0 14.2 117 412-556 531-655 (776)
158 PRK08074 bifunctional ATP-depe 98.6 1.2E-05 2.7E-10 107.4 30.6 133 410-550 738-890 (928)
159 PRK14873 primosome assembly pr 98.5 2.2E-06 4.8E-11 109.5 20.0 67 295-370 242-312 (665)
160 PF02399 Herpes_ori_bp: Origin 98.4 1.3E-05 2.9E-10 101.6 21.1 108 424-554 281-388 (824)
161 COG0653 SecA Preprotein transl 98.3 1.2E-05 2.6E-10 102.4 17.8 197 316-548 307-539 (822)
162 PRK12901 secA preprotein trans 98.2 5E-06 1.1E-10 107.2 12.1 200 317-552 507-739 (1112)
163 KOG0385|consensus 98.2 6.9E-05 1.5E-09 92.9 19.7 115 423-557 485-602 (971)
164 KOG0387|consensus 98.1 0.00019 4.1E-09 89.6 22.6 115 424-557 545-661 (923)
165 KOG0384|consensus 97.8 0.00025 5.5E-09 92.0 16.6 133 424-582 698-837 (1373)
166 COG4889 Predicted helicase [Ge 97.8 4.8E-05 1E-09 94.7 9.2 103 427-547 462-577 (1518)
167 KOG0390|consensus 97.8 0.0004 8.6E-09 88.7 16.3 105 429-555 598-708 (776)
168 KOG0392|consensus 97.7 0.0011 2.4E-08 86.1 19.3 113 425-557 1340-1457(1549)
169 PF13245 AAA_19: Part of AAA d 97.4 0.00041 8.9E-09 64.7 6.5 51 50-100 6-62 (76)
170 PF06862 DUF1253: Protein of u 97.3 0.0075 1.6E-07 73.6 17.8 245 292-562 130-423 (442)
171 KOG1000|consensus 97.2 0.051 1.1E-06 65.5 23.3 79 421-504 488-568 (689)
172 PRK01172 ski2-like helicase; P 97.1 0.00017 3.6E-09 94.0 1.5 119 795-913 348-492 (674)
173 TIGR03117 cas_csf4 CRISPR-asso 97.1 0.0041 8.8E-08 79.4 13.5 57 43-99 5-65 (636)
174 PF13604 AAA_30: AAA domain; P 96.8 0.007 1.5E-07 66.8 10.3 58 41-99 3-65 (196)
175 COG1199 DinG Rad3-related DNA 96.7 0.014 3E-07 76.0 14.6 157 408-572 463-640 (654)
176 PRK10875 recD exonuclease V su 96.6 0.01 2.2E-07 76.0 11.2 62 42-103 155-222 (615)
177 TIGR01447 recD exodeoxyribonuc 96.6 0.014 3E-07 74.6 12.2 62 42-103 148-216 (586)
178 PRK11747 dinG ATP-dependent DN 96.4 0.024 5.1E-07 74.2 13.3 128 409-550 520-671 (697)
179 PF13086 AAA_11: AAA domain; P 96.4 0.0094 2E-07 66.2 8.4 62 41-102 3-75 (236)
180 KOG1803|consensus 96.4 0.0046 9.9E-08 76.2 6.1 60 42-101 188-250 (649)
181 PF00448 SRP54: SRP54-type pro 96.3 0.0088 1.9E-07 66.0 7.6 51 55-105 2-56 (196)
182 KOG0952|consensus 96.3 0.002 4.3E-08 83.0 2.2 147 293-446 1020-1174(1230)
183 TIGR00604 rad3 DNA repair heli 96.2 0.025 5.3E-07 74.4 12.1 196 351-550 441-671 (705)
184 PRK06526 transposase; Provisio 96.1 0.015 3.2E-07 66.8 8.4 22 49-70 93-114 (254)
185 PRK12723 flagellar biosynthesi 96.1 0.12 2.6E-06 62.8 16.3 53 317-370 252-306 (388)
186 PF00176 SNF2_N: SNF2 family N 96.1 0.036 7.7E-07 64.3 11.3 40 52-91 23-69 (299)
187 TIGR01448 recD_rel helicase, p 95.9 0.049 1.1E-06 71.5 12.4 61 36-96 320-384 (720)
188 COG1419 FlhF Flagellar GTP-bin 95.9 0.19 4.1E-06 60.6 16.1 54 316-370 278-332 (407)
189 cd00009 AAA The AAA+ (ATPases 95.6 0.12 2.7E-06 52.1 11.7 27 44-70 7-35 (151)
190 PRK14722 flhF flagellar biosyn 95.5 0.098 2.1E-06 63.2 12.1 49 317-366 213-262 (374)
191 PRK05703 flhF flagellar biosyn 95.4 0.26 5.5E-06 60.9 15.4 52 317-369 297-350 (424)
192 PRK10536 hypothetical protein; 95.3 0.025 5.4E-07 64.5 6.0 54 36-89 56-113 (262)
193 PF02562 PhoH: PhoH-like prote 95.3 0.019 4.2E-07 63.6 4.9 51 39-89 4-58 (205)
194 TIGR00376 DNA helicase, putati 95.3 0.04 8.6E-07 71.3 8.4 65 39-103 157-224 (637)
195 PF00580 UvrD-helicase: UvrD/R 95.3 0.036 7.7E-07 64.7 7.4 63 42-106 3-71 (315)
196 COG0610 Type I site-specific r 95.3 1 2.2E-05 61.2 21.6 51 476-545 589-639 (962)
197 PRK14974 cell division protein 95.3 0.47 1E-05 56.8 16.6 44 318-362 221-265 (336)
198 PRK11889 flhF flagellar biosyn 95.2 0.16 3.6E-06 61.2 12.5 46 319-365 320-366 (436)
199 PRK08181 transposase; Validate 95.2 0.16 3.4E-06 59.0 11.9 20 50-69 102-121 (269)
200 TIGR02768 TraA_Ti Ti-type conj 95.2 0.16 3.4E-06 67.1 13.4 60 37-96 350-412 (744)
201 KOG0391|consensus 94.6 0.17 3.6E-06 66.3 10.9 115 423-557 1274-1390(1958)
202 PF13307 Helicase_C_2: Helicas 94.5 0.022 4.7E-07 61.3 2.6 121 424-550 8-147 (167)
203 PRK07003 DNA polymerase III su 94.5 0.13 2.9E-06 66.3 9.8 39 318-358 118-156 (830)
204 KOG1802|consensus 94.5 0.076 1.7E-06 66.0 7.2 64 40-103 411-477 (935)
205 smart00488 DEXDc2 DEAD-like he 94.4 0.11 2.3E-06 61.0 8.0 35 41-75 10-48 (289)
206 smart00489 DEXDc3 DEAD-like he 94.4 0.11 2.3E-06 61.0 8.0 35 41-75 10-48 (289)
207 PF09848 DUF2075: Uncharacteri 94.3 0.14 3E-06 61.8 9.1 17 55-71 2-18 (352)
208 PRK06835 DNA replication prote 94.2 0.3 6.5E-06 58.3 11.5 54 316-370 243-297 (329)
209 PRK06645 DNA polymerase III su 94.2 0.25 5.4E-06 62.2 11.2 48 315-366 124-171 (507)
210 PRK14949 DNA polymerase III su 94.1 0.17 3.6E-06 66.6 9.6 44 318-365 118-161 (944)
211 PRK13889 conjugal transfer rel 94.1 0.35 7.5E-06 65.2 12.7 61 36-96 343-406 (988)
212 PRK15483 type III restriction- 94.0 0.77 1.7E-05 61.2 15.4 46 480-543 501-546 (986)
213 PRK02362 ski2-like helicase; P 93.8 0.023 5E-07 75.1 1.2 119 794-913 366-514 (737)
214 TIGR02760 TraI_TIGR conjugativ 93.7 4.1 8.9E-05 59.4 23.0 62 37-98 427-492 (1960)
215 KOG2340|consensus 93.7 1.9 4.2E-05 53.0 16.5 116 425-560 552-674 (698)
216 PRK12726 flagellar biosynthesi 93.6 0.31 6.6E-06 58.8 9.9 52 318-370 284-336 (407)
217 PF13401 AAA_22: AAA domain; P 93.6 0.071 1.5E-06 54.0 4.1 55 52-106 2-64 (131)
218 PF07517 SecA_DEAD: SecA DEAD- 93.6 0.79 1.7E-05 53.0 12.9 100 36-139 72-180 (266)
219 PRK08691 DNA polymerase III su 93.6 0.24 5.1E-06 63.9 9.4 42 315-358 115-156 (709)
220 PRK07764 DNA polymerase III su 93.5 0.38 8.1E-06 63.9 11.5 41 316-358 117-157 (824)
221 PRK14964 DNA polymerase III su 93.4 0.16 3.5E-06 63.5 7.4 42 315-358 112-153 (491)
222 PRK07994 DNA polymerase III su 93.3 0.16 3.4E-06 65.5 7.2 39 317-357 117-155 (647)
223 PRK07952 DNA replication prote 93.1 0.55 1.2E-05 53.7 10.7 54 317-371 160-214 (244)
224 PRK12727 flagellar biosynthesi 93.0 0.45 9.7E-06 59.6 10.4 52 317-369 426-477 (559)
225 PF01695 IstB_IS21: IstB-like 93.0 0.29 6.4E-06 53.2 7.9 22 48-69 41-62 (178)
226 PRK06893 DNA replication initi 93.0 0.27 5.9E-06 55.6 7.9 50 317-366 89-139 (229)
227 PRK14956 DNA polymerase III su 92.9 0.2 4.3E-06 62.2 7.1 41 318-362 120-160 (484)
228 PRK14962 DNA polymerase III su 92.9 0.43 9.4E-06 59.7 10.1 48 315-366 113-160 (472)
229 COG1111 MPH1 ERCC4-like helica 92.8 6.8 0.00015 48.5 19.4 73 425-503 58-136 (542)
230 PRK14723 flhF flagellar biosyn 92.8 0.73 1.6E-05 60.3 12.2 50 317-367 261-311 (767)
231 PRK14960 DNA polymerase III su 92.7 0.38 8.2E-06 61.6 9.4 40 317-358 116-155 (702)
232 KOG0389|consensus 92.7 0.55 1.2E-05 60.0 10.5 114 424-557 776-891 (941)
233 PRK08903 DnaA regulatory inact 92.7 1 2.2E-05 50.6 12.0 18 53-70 41-58 (227)
234 PRK08116 hypothetical protein; 92.5 0.63 1.4E-05 54.0 10.3 15 55-69 115-129 (268)
235 PF00437 T2SE: Type II/IV secr 92.5 0.15 3.3E-06 58.9 5.1 31 47-77 120-150 (270)
236 PRK00149 dnaA chromosomal repl 92.5 0.55 1.2E-05 58.6 10.4 15 55-69 149-163 (450)
237 PRK14952 DNA polymerase III su 92.3 0.44 9.5E-06 61.0 9.3 42 315-358 114-155 (584)
238 PRK12323 DNA polymerase III su 92.3 0.28 6.1E-06 62.6 7.5 40 317-358 122-161 (700)
239 PRK14957 DNA polymerase III su 92.3 0.5 1.1E-05 60.0 9.6 42 315-358 115-156 (546)
240 PRK08727 hypothetical protein; 92.2 0.72 1.6E-05 52.4 10.1 17 54-70 41-57 (233)
241 TIGR02782 TrbB_P P-type conjug 92.1 0.28 6E-06 57.9 6.8 46 44-89 122-171 (299)
242 PRK05642 DNA replication initi 92.0 0.34 7.4E-06 55.0 7.1 48 317-364 95-142 (234)
243 COG2909 MalT ATP-dependent tra 92.0 1.5 3.3E-05 57.0 13.4 35 41-75 21-58 (894)
244 PRK13826 Dtr system oriT relax 92.0 1.1 2.5E-05 60.8 12.9 61 36-96 378-441 (1102)
245 PRK14088 dnaA chromosomal repl 91.8 1.4 3E-05 54.9 12.8 14 56-69 132-145 (440)
246 PRK14961 DNA polymerase III su 91.8 0.55 1.2E-05 56.9 9.0 42 315-358 115-156 (363)
247 PRK08939 primosomal protein Dn 91.8 1.6 3.4E-05 51.8 12.5 54 317-370 215-269 (306)
248 PRK14721 flhF flagellar biosyn 91.7 1.1 2.5E-05 55.0 11.5 52 317-369 267-319 (420)
249 PRK14958 DNA polymerase III su 91.6 0.51 1.1E-05 59.7 8.7 40 317-358 117-156 (509)
250 PRK13833 conjugal transfer pro 91.6 0.31 6.8E-06 57.9 6.4 27 46-72 136-162 (323)
251 PF13555 AAA_29: P-loop contai 91.6 0.18 3.9E-06 45.2 3.4 18 54-71 23-40 (62)
252 COG2804 PulE Type II secretory 91.6 0.25 5.4E-06 61.0 5.7 41 38-78 240-282 (500)
253 PRK09112 DNA polymerase III su 91.4 0.44 9.6E-06 57.4 7.5 41 316-358 138-178 (351)
254 PRK14951 DNA polymerase III su 91.2 0.6 1.3E-05 60.1 8.9 42 315-358 120-161 (618)
255 PRK14969 DNA polymerase III su 91.2 0.97 2.1E-05 57.5 10.6 42 315-358 115-156 (527)
256 PRK09111 DNA polymerase III su 91.2 0.91 2E-05 58.4 10.4 42 315-358 128-169 (598)
257 PRK13894 conjugal transfer ATP 91.1 0.37 8.1E-06 57.3 6.5 27 46-72 140-166 (319)
258 TIGR00362 DnaA chromosomal rep 91.1 0.95 2.1E-05 55.7 10.2 15 55-69 137-151 (405)
259 smart00382 AAA ATPases associa 91.1 0.28 6E-06 48.9 4.7 25 54-78 2-26 (148)
260 COG0466 Lon ATP-dependent Lon 91.1 0.73 1.6E-05 58.8 9.1 34 36-69 324-365 (782)
261 PRK06921 hypothetical protein; 91.1 1.2 2.6E-05 51.7 10.4 17 53-69 116-132 (266)
262 PRK12377 putative replication 91.0 1.3 2.7E-05 51.0 10.3 16 54-69 101-116 (248)
263 PRK13900 type IV secretion sys 90.9 0.39 8.4E-06 57.5 6.3 26 47-72 153-178 (332)
264 cd01130 VirB11-like_ATPase Typ 90.7 0.32 6.8E-06 53.2 5.0 26 46-71 17-42 (186)
265 PRK07471 DNA polymerase III su 90.6 1.3 2.8E-05 53.8 10.5 45 315-361 137-181 (365)
266 PRK13851 type IV secretion sys 90.6 0.29 6.3E-06 58.7 4.9 28 46-73 154-181 (344)
267 PF05127 Helicase_RecD: Helica 90.6 0.14 3.1E-06 55.5 2.1 45 58-102 1-48 (177)
268 TIGR03117 cas_csf4 CRISPR-asso 90.5 1.8 3.8E-05 56.0 12.1 77 412-496 458-538 (636)
269 PRK14087 dnaA chromosomal repl 90.3 1.1 2.3E-05 56.0 9.8 16 55-70 142-157 (450)
270 COG0553 HepA Superfamily II DN 90.2 0.63 1.4E-05 62.5 8.2 111 427-557 713-825 (866)
271 PRK14729 miaA tRNA delta(2)-is 90.2 0.54 1.2E-05 55.3 6.5 56 124-181 92-151 (300)
272 PRK14086 dnaA chromosomal repl 90.1 1 2.2E-05 57.6 9.3 14 56-69 316-329 (617)
273 COG2805 PilT Tfp pilus assembl 90.1 0.23 4.9E-06 57.4 3.2 23 53-75 124-146 (353)
274 PRK14955 DNA polymerase III su 90.0 0.85 1.8E-05 56.0 8.4 40 315-356 123-162 (397)
275 KOG0388|consensus 90.0 1 2.2E-05 56.7 8.8 115 423-557 1042-1157(1185)
276 TIGR00596 rad1 DNA repair prot 89.9 0.31 6.7E-06 64.4 4.7 24 424-447 294-317 (814)
277 PF02367 UPF0079: Uncharacteri 89.8 0.5 1.1E-05 48.4 5.1 37 43-79 4-40 (123)
278 COG2812 DnaX DNA polymerase II 89.6 0.25 5.4E-06 61.8 3.3 41 315-357 115-155 (515)
279 PRK14950 DNA polymerase III su 89.5 0.94 2E-05 58.4 8.6 41 315-357 116-156 (585)
280 PRK06731 flhF flagellar biosyn 89.5 2.7 5.8E-05 48.9 11.4 51 318-369 153-204 (270)
281 TIGR02524 dot_icm_DotB Dot/Icm 89.4 0.37 7.9E-06 58.3 4.5 25 47-71 126-151 (358)
282 PHA03333 putative ATPase subun 88.9 8.7 0.00019 49.7 16.0 52 53-104 186-240 (752)
283 PRK14965 DNA polymerase III su 88.8 1.2 2.6E-05 57.3 8.8 42 315-358 115-156 (576)
284 COG1484 DnaC DNA replication p 88.5 2.5 5.4E-05 48.7 10.3 23 47-69 98-120 (254)
285 PRK08451 DNA polymerase III su 88.5 1.4 3.1E-05 55.7 9.0 42 315-358 113-154 (535)
286 PF05970 PIF1: PIF1-like helic 88.5 0.8 1.7E-05 55.6 6.5 55 42-96 4-66 (364)
287 KOG0989|consensus 88.3 0.61 1.3E-05 54.2 4.9 41 316-358 126-166 (346)
288 PRK12422 chromosomal replicati 88.2 1.1 2.5E-05 55.7 7.7 15 55-69 142-156 (445)
289 PRK11054 helD DNA helicase IV; 88.2 2.2 4.9E-05 55.9 10.7 68 36-105 193-266 (684)
290 TIGR00678 holB DNA polymerase 88.1 2 4.4E-05 46.8 8.9 41 315-357 92-132 (188)
291 PF00308 Bac_DnaA: Bacterial d 88.1 1.7 3.7E-05 48.9 8.4 14 56-69 36-49 (219)
292 COG1444 Predicted P-loop ATPas 88.0 2.2 4.8E-05 55.5 10.3 48 55-102 232-283 (758)
293 PRK00254 ski2-like helicase; P 88.0 0.19 4.2E-06 66.3 0.9 64 39-102 23-90 (720)
294 PRK12724 flagellar biosynthesi 87.9 0.62 1.3E-05 57.0 5.0 51 54-104 223-278 (432)
295 cd01131 PilT Pilus retraction 87.9 0.4 8.7E-06 53.0 3.2 18 55-72 2-19 (198)
296 PRK14953 DNA polymerase III su 87.9 1.5 3.2E-05 55.3 8.5 40 315-356 115-154 (486)
297 PRK05973 replicative DNA helic 87.8 0.73 1.6E-05 52.5 5.3 53 21-77 34-87 (237)
298 cd01129 PulE-GspE PulE/GspE Th 87.8 0.65 1.4E-05 53.8 5.0 33 42-74 66-100 (264)
299 PRK07133 DNA polymerase III su 87.8 2.2 4.9E-05 55.7 10.2 42 315-358 114-155 (725)
300 TIGR02640 gas_vesic_GvpN gas v 87.8 0.97 2.1E-05 52.2 6.4 30 42-71 9-38 (262)
301 TIGR03499 FlhF flagellar biosy 87.6 0.86 1.9E-05 53.3 5.9 50 53-102 193-248 (282)
302 PRK14954 DNA polymerase III su 87.6 2.3 5E-05 55.0 10.1 61 315-379 123-183 (620)
303 COG1121 ZnuC ABC-type Mn/Zn tr 87.5 3.1 6.8E-05 47.7 10.1 62 315-381 153-214 (254)
304 PRK05563 DNA polymerase III su 87.5 1.6 3.6E-05 55.9 8.8 40 315-356 115-154 (559)
305 TIGR00604 rad3 DNA repair heli 87.5 1 2.2E-05 59.4 7.2 47 43-89 18-69 (705)
306 PRK10919 ATP-dependent DNA hel 87.3 1.1 2.3E-05 58.8 7.2 63 41-105 4-72 (672)
307 PF13872 AAA_34: P-loop contai 87.3 6 0.00013 46.5 12.3 38 54-91 62-103 (303)
308 PRK14963 DNA polymerase III su 87.2 2.4 5.2E-05 53.7 9.8 41 315-357 112-152 (504)
309 PRK10416 signal recognition pa 87.0 3 6.5E-05 49.7 10.0 50 54-103 114-167 (318)
310 COG4962 CpaF Flp pilus assembl 86.8 1.1 2.4E-05 53.0 6.1 45 47-91 166-211 (355)
311 PRK10436 hypothetical protein; 86.8 0.74 1.6E-05 57.4 4.9 32 42-73 204-237 (462)
312 PRK14959 DNA polymerase III su 86.7 2.5 5.4E-05 54.4 9.6 39 316-356 116-154 (624)
313 TIGR02788 VirB11 P-type DNA tr 86.7 0.78 1.7E-05 54.4 4.9 24 49-72 139-162 (308)
314 PRK05896 DNA polymerase III su 86.6 1.4 3.1E-05 56.3 7.5 42 315-358 115-156 (605)
315 TIGR00174 miaA tRNA isopenteny 86.6 2.6 5.6E-05 49.5 9.0 52 124-177 88-143 (287)
316 TIGR00064 ftsY signal recognit 86.6 1.1 2.5E-05 52.1 6.1 51 54-104 72-126 (272)
317 PHA02544 44 clamp loader, smal 86.6 5.8 0.00013 46.9 12.2 25 46-70 32-59 (316)
318 PF13207 AAA_17: AAA domain; P 86.5 0.43 9.4E-06 47.7 2.3 14 56-69 1-14 (121)
319 COG0513 SrmB Superfamily II DN 86.5 2.6 5.7E-05 53.5 9.7 72 428-503 102-179 (513)
320 COG1126 GlnQ ABC-type polar am 86.3 0.42 9.2E-06 53.1 2.2 22 50-71 24-45 (240)
321 COG0324 MiaA tRNA delta(2)-iso 86.2 2.4 5.2E-05 50.0 8.4 52 125-176 93-146 (308)
322 PRK14948 DNA polymerase III su 86.1 3.5 7.5E-05 53.5 10.6 40 315-356 117-156 (620)
323 TIGR00150 HI0065_YjeE ATPase, 86.0 1.2 2.6E-05 46.2 5.2 31 44-74 12-42 (133)
324 PF13671 AAA_33: AAA domain; P 85.8 0.7 1.5E-05 47.6 3.5 20 56-75 1-20 (143)
325 KOG1131|consensus 85.7 2 4.3E-05 52.7 7.5 35 42-76 23-57 (755)
326 PRK11747 dinG ATP-dependent DN 85.5 2.5 5.4E-05 55.7 9.1 56 43-98 33-96 (697)
327 PF13173 AAA_14: AAA domain 85.5 0.77 1.7E-05 46.9 3.6 24 53-76 1-24 (128)
328 COG1136 SalX ABC-type antimicr 85.4 0.49 1.1E-05 53.3 2.2 21 51-71 28-48 (226)
329 TIGR02525 plasmid_TraJ plasmid 85.2 0.92 2E-05 55.1 4.6 20 52-71 147-166 (372)
330 PRK10917 ATP-dependent DNA hel 85.1 2 4.3E-05 56.6 7.9 78 425-503 310-388 (681)
331 PRK14970 DNA polymerase III su 85.0 2.6 5.6E-05 51.1 8.3 25 46-70 28-55 (367)
332 TIGR01420 pilT_fam pilus retra 85.0 0.72 1.6E-05 55.5 3.5 20 53-72 121-140 (343)
333 PF06745 KaiC: KaiC; InterPro 84.7 1 2.2E-05 50.6 4.4 26 53-78 18-43 (226)
334 PRK14873 primosome assembly pr 84.6 2.1 4.6E-05 55.8 7.8 85 413-503 178-262 (665)
335 PRK14971 DNA polymerase III su 84.5 3.2 6.9E-05 53.9 9.2 40 315-356 117-156 (614)
336 PRK05707 DNA polymerase III su 84.1 3.8 8.2E-05 49.1 9.0 42 315-358 102-143 (328)
337 COG3839 MalK ABC-type sugar tr 84.0 0.59 1.3E-05 55.7 2.2 22 50-71 25-46 (338)
338 PRK05580 primosome assembly pr 84.0 2.2 4.8E-05 56.0 7.6 74 425-503 190-263 (679)
339 TIGR02538 type_IV_pilB type IV 83.8 1.1 2.3E-05 57.6 4.6 31 41-71 301-333 (564)
340 TIGR00595 priA primosomal prot 83.8 2.7 5.9E-05 53.2 8.1 74 425-503 25-98 (505)
341 PRK08233 hypothetical protein; 83.8 1.3 2.8E-05 47.6 4.5 18 54-71 3-20 (182)
342 KOG2228|consensus 83.8 15 0.00033 43.6 13.1 42 322-363 140-183 (408)
343 PF12846 AAA_10: AAA-like doma 83.7 1 2.3E-05 52.0 4.1 38 54-91 1-40 (304)
344 COG1116 TauB ABC-type nitrate/ 83.7 0.64 1.4E-05 52.8 2.2 22 50-71 25-46 (248)
345 PF13177 DNA_pol3_delta2: DNA 83.6 2.8 6.1E-05 44.9 6.9 44 316-361 99-142 (162)
346 TIGR03263 guanyl_kin guanylate 83.5 0.89 1.9E-05 49.0 3.2 18 54-71 1-18 (180)
347 PF12340 DUF3638: Protein of u 83.5 7.5 0.00016 44.0 10.4 88 32-121 16-109 (229)
348 PRK06995 flhF flagellar biosyn 83.3 1.9 4.1E-05 54.1 6.2 52 53-104 255-312 (484)
349 TIGR02533 type_II_gspE general 83.3 1.2 2.6E-05 56.0 4.6 32 41-72 227-260 (486)
350 PHA02244 ATPase-like protein 83.3 2 4.3E-05 51.9 6.1 30 42-71 107-136 (383)
351 COG1110 Reverse gyrase [DNA re 83.3 2.5 5.3E-05 56.0 7.3 68 423-490 123-191 (1187)
352 PRK04296 thymidine kinase; Pro 83.2 1 2.2E-05 49.5 3.5 24 54-77 2-25 (190)
353 PF12775 AAA_7: P-loop contain 83.1 1.4 3E-05 51.4 4.7 32 46-77 24-56 (272)
354 PRK00300 gmk guanylate kinase; 83.0 0.98 2.1E-05 49.8 3.3 20 52-71 3-22 (205)
355 COG5008 PilU Tfp pilus assembl 82.8 0.84 1.8E-05 51.8 2.6 22 51-72 124-145 (375)
356 TIGR01650 PD_CobS cobaltochela 82.8 1.9 4.2E-05 51.2 5.8 28 45-72 55-82 (327)
357 COG0470 HolB ATPase involved i 82.7 2.5 5.4E-05 49.8 6.7 40 317-358 107-146 (325)
358 COG1199 DinG Rad3-related DNA 82.6 2.4 5.3E-05 55.5 7.2 52 46-97 26-80 (654)
359 PRK13764 ATPase; Provisional 82.4 1.8 3.8E-05 55.6 5.6 26 46-71 248-274 (602)
360 cd01124 KaiC KaiC is a circadi 82.4 1 2.2E-05 48.6 3.1 22 56-77 1-22 (187)
361 COG0593 DnaA ATPase involved i 82.3 9.2 0.0002 46.9 11.3 43 319-361 175-218 (408)
362 PLN02840 tRNA dimethylallyltra 82.3 4.9 0.00011 49.5 9.0 28 124-151 110-137 (421)
363 PRK10867 signal recognition pa 82.2 6.7 0.00015 48.7 10.3 49 55-103 101-154 (433)
364 COG1219 ClpX ATP-dependent pro 82.2 1.1 2.3E-05 52.3 3.2 32 38-69 75-112 (408)
365 PRK11773 uvrD DNA-dependent he 82.1 2.6 5.7E-05 55.8 7.3 64 40-105 10-79 (721)
366 PF13238 AAA_18: AAA domain; P 82.0 0.86 1.9E-05 45.6 2.2 14 57-70 1-14 (129)
367 COG0630 VirB11 Type IV secreto 82.0 1.3 2.9E-05 52.5 4.1 29 47-75 136-164 (312)
368 TIGR03877 thermo_KaiC_1 KaiC d 81.9 1 2.3E-05 51.1 3.1 27 52-78 19-45 (237)
369 PF05729 NACHT: NACHT domain 81.9 1.2 2.6E-05 46.6 3.3 49 322-370 84-139 (166)
370 COG3973 Superfamily I DNA and 81.8 2.6 5.6E-05 53.0 6.4 63 42-106 215-285 (747)
371 cd00984 DnaB_C DnaB helicase C 81.7 0.97 2.1E-05 51.2 2.7 30 48-77 7-36 (242)
372 PF00005 ABC_tran: ABC transpo 81.6 0.78 1.7E-05 46.9 1.8 21 52-72 9-29 (137)
373 TIGR01074 rep ATP-dependent DN 81.6 3 6.4E-05 54.8 7.5 62 42-105 4-71 (664)
374 TIGR03878 thermo_KaiC_2 KaiC d 81.6 1.1 2.3E-05 51.9 3.0 26 52-77 34-59 (259)
375 TIGR02397 dnaX_nterm DNA polym 81.5 9.4 0.0002 45.8 11.2 40 315-356 113-152 (355)
376 cd00544 CobU Adenosylcobinamid 81.4 1.7 3.8E-05 46.9 4.4 47 57-104 2-48 (169)
377 PF07728 AAA_5: AAA domain (dy 81.2 1.2 2.6E-05 45.9 3.0 14 56-69 1-14 (139)
378 KOG1970|consensus 81.2 1.3 2.8E-05 55.0 3.6 19 53-71 109-127 (634)
379 PF00625 Guanylate_kin: Guanyl 81.1 2.6 5.6E-05 45.9 5.6 19 53-71 1-19 (183)
380 PRK14530 adenylate kinase; Pro 80.9 1.5 3.3E-05 48.9 3.9 18 54-71 3-20 (215)
381 TIGR03345 VI_ClpV1 type VI sec 80.8 7.1 0.00015 52.6 10.7 14 56-69 598-611 (852)
382 TIGR01075 uvrD DNA helicase II 80.4 2.7 5.9E-05 55.6 6.5 63 41-105 6-74 (715)
383 COG4525 TauB ABC-type taurine 80.4 1.1 2.3E-05 49.1 2.2 21 50-70 27-47 (259)
384 PRK04301 radA DNA repair and r 80.3 3 6.6E-05 49.6 6.3 27 51-77 99-125 (317)
385 cd00820 PEPCK_HprK Phosphoenol 80.2 1.1 2.5E-05 44.6 2.3 23 52-74 13-35 (107)
386 PLN02796 D-glycerate 3-kinase 80.2 3.6 7.8E-05 49.4 6.7 16 56-71 102-117 (347)
387 PRK06647 DNA polymerase III su 80.2 4.1 8.9E-05 52.3 7.8 40 315-356 115-154 (563)
388 cd00071 GMPK Guanosine monopho 80.1 1.3 2.9E-05 46.0 2.8 15 57-71 2-16 (137)
389 PF00004 AAA: ATPase family as 80.1 2 4.4E-05 43.1 4.2 14 57-70 1-14 (132)
390 PRK06305 DNA polymerase III su 80.0 6 0.00013 49.5 9.0 39 317-357 119-157 (451)
391 PRK10078 ribose 1,5-bisphospho 80.0 1.2 2.5E-05 48.7 2.5 18 54-71 2-19 (186)
392 COG1117 PstB ABC-type phosphat 80.0 1.1 2.4E-05 49.8 2.2 20 51-70 30-49 (253)
393 PLN02165 adenylate isopentenyl 80.0 1.4 3E-05 52.5 3.3 42 29-70 14-59 (334)
394 PRK00771 signal recognition pa 79.9 8.6 0.00019 47.9 10.2 49 55-103 96-148 (437)
395 TIGR02238 recomb_DMC1 meiotic 79.6 2.7 5.9E-05 50.0 5.6 53 25-77 62-119 (313)
396 PRK09183 transposase/IS protei 79.6 7.4 0.00016 45.0 9.0 24 51-74 99-122 (259)
397 PF03193 DUF258: Protein of un 79.5 1.9 4.1E-05 46.2 3.8 26 46-72 28-53 (161)
398 TIGR03015 pepcterm_ATPase puta 79.5 4.4 9.5E-05 46.5 7.2 24 54-77 43-66 (269)
399 TIGR00643 recG ATP-dependent D 79.5 4.2 9.2E-05 53.0 7.8 78 425-503 284-362 (630)
400 cd01394 radB RadB. The archaea 79.5 1.4 3.1E-05 49.0 3.1 26 52-77 17-42 (218)
401 TIGR01359 UMP_CMP_kin_fam UMP- 79.4 1.7 3.7E-05 46.9 3.5 18 56-73 1-18 (183)
402 KOG2373|consensus 79.2 0.97 2.1E-05 52.9 1.6 27 52-78 271-297 (514)
403 COG0802 Predicted ATPase or ki 79.2 2.9 6.2E-05 44.2 4.9 46 43-89 14-59 (149)
404 cd01120 RecA-like_NTPases RecA 79.1 1.5 3.3E-05 45.4 3.0 21 56-76 1-21 (165)
405 TIGR02237 recomb_radB DNA repa 79.1 1.5 3.2E-05 48.6 3.0 26 52-77 10-35 (209)
406 PRK11634 ATP-dependent RNA hel 78.8 8.3 0.00018 50.3 10.1 75 425-503 74-154 (629)
407 PRK07940 DNA polymerase III su 78.8 4.7 0.0001 49.5 7.4 43 315-360 113-155 (394)
408 PF13191 AAA_16: AAA ATPase do 78.7 1.7 3.7E-05 46.5 3.3 21 53-73 23-43 (185)
409 cd03238 ABC_UvrA The excision 78.5 1.6 3.5E-05 47.5 3.0 22 51-72 18-39 (176)
410 PF04665 Pox_A32: Poxvirus A32 78.5 2.8 6E-05 47.9 5.0 39 50-88 8-49 (241)
411 PRK14737 gmk guanylate kinase; 78.4 1.6 3.4E-05 47.9 2.9 22 53-74 3-24 (186)
412 PTZ00035 Rad51 protein; Provis 78.4 3.9 8.5E-05 49.1 6.5 52 25-76 84-140 (337)
413 PRK00698 tmk thymidylate kinas 78.4 2.5 5.4E-05 46.4 4.5 19 53-71 2-20 (205)
414 TIGR02322 phosphon_PhnN phosph 78.4 1.4 3E-05 47.5 2.5 17 55-71 2-18 (179)
415 KOG0741|consensus 78.2 5.7 0.00012 49.3 7.6 25 45-69 245-271 (744)
416 PRK14527 adenylate kinase; Pro 78.2 2.1 4.5E-05 46.9 3.8 21 53-73 5-25 (191)
417 PLN03187 meiotic recombination 78.1 3.7 8E-05 49.4 6.1 25 53-77 125-149 (344)
418 COG1122 CbiO ABC-type cobalt t 78.1 1.3 2.8E-05 50.5 2.1 52 318-370 155-206 (235)
419 TIGR02236 recomb_radA DNA repa 78.0 3.9 8.4E-05 48.4 6.3 26 52-77 93-118 (310)
420 PRK10646 ADP-binding protein; 78.0 3.1 6.8E-05 44.2 4.9 29 44-72 18-46 (153)
421 PRK05541 adenylylsulfate kinas 78.0 1.2 2.6E-05 48.0 1.8 22 50-71 3-24 (176)
422 cd01127 TrwB Bacterial conjuga 78.0 1.9 4.1E-05 53.2 3.8 41 52-92 40-82 (410)
423 TIGR00580 mfd transcription-re 77.9 4.7 0.0001 54.6 7.7 78 425-503 500-578 (926)
424 COG1120 FepC ABC-type cobalami 77.9 1.3 2.9E-05 50.9 2.2 21 51-71 25-45 (258)
425 PRK08533 flagellar accessory p 77.9 1.8 3.8E-05 49.2 3.2 27 51-77 21-47 (230)
426 PRK05800 cobU adenosylcobinami 77.7 3.1 6.7E-05 45.0 4.9 50 56-106 3-52 (170)
427 COG0467 RAD55 RecA-superfamily 77.7 1.8 3.8E-05 49.9 3.2 28 51-78 20-47 (260)
428 PRK07261 topology modulation p 77.6 2.1 4.6E-05 46.2 3.6 15 56-70 2-16 (171)
429 TIGR03819 heli_sec_ATPase heli 77.3 2.9 6.3E-05 50.3 4.9 29 44-72 167-196 (340)
430 PRK07399 DNA polymerase III su 77.1 23 0.0005 42.2 12.4 42 315-359 120-161 (314)
431 TIGR01360 aden_kin_iso1 adenyl 76.9 2.5 5.4E-05 45.6 3.9 18 54-71 3-20 (188)
432 PRK14531 adenylate kinase; Pro 76.7 2.5 5.3E-05 46.1 3.8 17 55-71 3-19 (183)
433 PF03215 Rad17: Rad17 cell cyc 76.6 2.4 5.2E-05 53.7 4.2 18 54-71 45-62 (519)
434 TIGR00235 udk uridine kinase. 76.6 1.8 3.8E-05 48.1 2.7 19 53-71 5-23 (207)
435 PRK04328 hypothetical protein; 76.6 2 4.3E-05 49.4 3.1 26 53-78 22-47 (249)
436 cd01122 GP4d_helicase GP4d_hel 76.4 1.9 4.2E-05 49.7 3.1 31 47-77 23-53 (271)
437 PRK08356 hypothetical protein; 76.4 2.4 5.2E-05 46.7 3.6 20 55-74 6-25 (195)
438 COG0563 Adk Adenylate kinase a 76.3 2.4 5.2E-05 46.2 3.6 16 56-71 2-17 (178)
439 PRK11776 ATP-dependent RNA hel 76.2 9.4 0.0002 47.8 9.3 75 425-503 72-152 (460)
440 KOG0347|consensus 76.1 4.6 0.0001 50.2 6.1 56 428-488 266-321 (731)
441 COG1102 Cmk Cytidylate kinase 76.1 3.3 7.1E-05 44.3 4.2 17 56-72 2-18 (179)
442 TIGR03881 KaiC_arch_4 KaiC dom 75.9 2.1 4.5E-05 48.2 3.1 27 51-77 17-43 (229)
443 PRK00091 miaA tRNA delta(2)-is 75.7 2.3 5E-05 50.4 3.5 18 54-71 4-21 (307)
444 TIGR03238 dnd_assoc_3 dnd syst 75.6 2 4.3E-05 53.4 2.9 22 51-72 29-50 (504)
445 PF02456 Adeno_IVa2: Adenoviru 75.5 3 6.4E-05 48.7 4.1 48 317-370 233-280 (369)
446 KOG1002|consensus 75.5 12 0.00027 45.9 9.2 134 38-247 183-327 (791)
447 PF13871 Helicase_C_4: Helicas 75.5 9 0.00019 44.7 8.1 121 472-642 53-176 (278)
448 PF02492 cobW: CobW/HypB/UreG, 75.4 3.4 7.4E-05 44.8 4.5 32 55-86 1-33 (178)
449 PRK14738 gmk guanylate kinase; 75.4 2.2 4.9E-05 47.4 3.1 20 53-72 12-31 (206)
450 PRK13973 thymidylate kinase; P 75.3 3.2 6.9E-05 46.4 4.3 18 54-71 3-20 (213)
451 PRK12402 replication factor C 75.2 3.8 8.3E-05 48.6 5.3 28 44-71 24-53 (337)
452 TIGR01166 cbiO cobalt transpor 75.2 1.8 3.8E-05 47.3 2.2 21 51-71 15-35 (190)
453 TIGR02655 circ_KaiC circadian 75.1 2.1 4.5E-05 54.1 3.0 27 52-78 19-45 (484)
454 COG3910 Predicted ATPase [Gene 75.1 3 6.5E-05 45.6 3.7 40 31-72 16-55 (233)
455 COG1875 NYN ribonuclease and A 74.8 4.2 9E-05 48.6 5.1 54 36-89 225-285 (436)
456 PLN02674 adenylate kinase 74.8 5.1 0.00011 45.9 5.8 22 55-76 32-53 (244)
457 cd00227 CPT Chloramphenicol (C 74.7 2.1 4.6E-05 46.1 2.6 17 54-70 2-18 (175)
458 PRK07667 uridine kinase; Provi 74.7 2.9 6.3E-05 46.0 3.7 25 46-70 5-33 (193)
459 COG1125 OpuBA ABC-type proline 74.6 1.8 3.9E-05 49.3 2.0 22 50-71 23-44 (309)
460 KOG0741|consensus 74.6 5.7 0.00012 49.3 6.3 45 56-100 540-584 (744)
461 COG0552 FtsY Signal recognitio 74.5 38 0.00083 40.4 12.8 50 56-105 141-194 (340)
462 PF14532 Sigma54_activ_2: Sigm 74.5 2.7 5.9E-05 43.5 3.3 30 40-69 7-36 (138)
463 COG2255 RuvB Holliday junction 74.5 2.9 6.2E-05 48.4 3.6 15 55-69 53-67 (332)
464 PRK11331 5-methylcytosine-spec 74.4 3.6 7.7E-05 51.0 4.7 29 43-71 183-211 (459)
465 PRK10689 transcription-repair 74.4 6.4 0.00014 54.6 7.6 78 425-503 649-727 (1147)
466 cd03292 ABC_FtsE_transporter F 74.3 1.9 4E-05 47.9 2.1 53 316-370 151-203 (214)
467 TIGR00041 DTMP_kinase thymidyl 74.3 3.6 7.8E-05 44.9 4.4 18 54-71 3-20 (195)
468 TIGR01073 pcrA ATP-dependent D 74.2 5.8 0.00013 52.7 7.0 62 41-104 6-73 (726)
469 PRK08118 topology modulation p 74.2 2.1 4.5E-05 46.1 2.4 14 56-69 3-16 (167)
470 PF13481 AAA_25: AAA domain; P 74.2 2.9 6.3E-05 45.4 3.6 24 53-76 31-54 (193)
471 cd03255 ABC_MJ0796_Lo1CDE_FtsE 74.1 1.9 4.1E-05 48.1 2.1 44 315-359 154-199 (218)
472 cd03226 ABC_cobalt_CbiO_domain 74.0 1.9 4.2E-05 47.6 2.1 53 316-370 141-193 (205)
473 PRK06067 flagellar accessory p 73.9 2.6 5.6E-05 47.7 3.2 26 52-77 23-48 (234)
474 cd03258 ABC_MetN_methionine_tr 73.9 1.9 4.2E-05 48.5 2.2 54 315-370 154-208 (233)
475 PRK14532 adenylate kinase; Pro 73.8 3 6.5E-05 45.4 3.6 16 56-71 2-17 (188)
476 cd01123 Rad51_DMC1_radA Rad51_ 73.7 2.6 5.6E-05 47.5 3.1 27 51-77 16-42 (235)
477 PRK06964 DNA polymerase III su 73.6 5.4 0.00012 48.0 5.9 44 315-360 128-171 (342)
478 cd02019 NK Nucleoside/nucleoti 73.5 2.8 6E-05 38.2 2.7 15 56-70 1-15 (69)
479 TIGR03608 L_ocin_972_ABC putat 73.4 2 4.3E-05 47.4 2.0 43 316-359 149-192 (206)
480 TIGR02315 ABC_phnC phosphonate 73.3 2 4.4E-05 48.6 2.2 54 315-370 159-213 (243)
481 smart00763 AAA_PrkA PrkA AAA d 73.3 3.4 7.4E-05 49.8 4.1 51 318-370 235-293 (361)
482 cd03224 ABC_TM1139_LivF_branch 73.3 2 4.2E-05 48.0 2.0 53 316-370 147-199 (222)
483 PF00931 NB-ARC: NB-ARC domain 73.3 4.5 9.7E-05 46.8 5.0 33 45-77 6-42 (287)
484 PF13476 AAA_23: AAA domain; P 73.2 2.6 5.6E-05 45.6 2.9 19 53-71 18-36 (202)
485 cd03235 ABC_Metallic_Cations A 73.2 2.1 4.5E-05 47.6 2.2 23 50-72 21-43 (213)
486 PRK05480 uridine/cytidine kina 73.2 2.2 4.7E-05 47.4 2.3 18 53-70 5-22 (209)
487 PRK13541 cytochrome c biogenes 73.2 2.1 4.5E-05 47.0 2.2 21 51-71 23-43 (195)
488 cd03269 ABC_putative_ATPase Th 73.1 2.1 4.5E-05 47.5 2.2 53 316-370 143-195 (210)
489 PRK06547 hypothetical protein; 73.1 5.3 0.00011 43.3 5.2 25 47-71 6-32 (172)
490 PRK06762 hypothetical protein; 73.1 3.8 8.3E-05 43.5 4.1 19 55-73 3-21 (166)
491 cd03225 ABC_cobalt_CbiO_domain 73.1 2 4.4E-05 47.6 2.0 53 316-370 149-201 (211)
492 cd03222 ABC_RNaseL_inhibitor T 73.0 2 4.4E-05 46.8 1.9 22 50-71 21-42 (177)
493 cd01672 TMPK Thymidine monopho 72.8 4.2 9.1E-05 44.0 4.4 16 56-71 2-17 (200)
494 PRK15177 Vi polysaccharide exp 72.7 2.2 4.7E-05 47.7 2.2 21 51-71 10-30 (213)
495 TIGR01425 SRP54_euk signal rec 72.7 4.8 0.0001 49.7 5.3 48 55-102 101-152 (429)
496 cd01393 recA_like RecA is a b 72.6 2.8 6.1E-05 46.8 3.1 27 51-77 16-42 (226)
497 cd02020 CMPK Cytidine monophos 72.5 3.6 7.8E-05 42.3 3.6 21 56-76 1-21 (147)
498 TIGR02785 addA_Gpos recombinat 72.5 6.9 0.00015 55.0 7.4 63 42-106 4-71 (1232)
499 COG1702 PhoH Phosphate starvat 72.5 3.5 7.7E-05 48.9 3.8 52 37-88 126-181 (348)
500 TIGR02673 FtsE cell division A 72.4 2.3 4.9E-05 47.3 2.2 53 316-370 152-204 (214)
No 1
>KOG0922|consensus
Probab=100.00 E-value=5.4e-115 Score=1031.20 Aligned_cols=565 Identities=42% Similarity=0.679 Sum_probs=529.4
Q ss_pred hhhhhhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCC---cEEEecchHHHHHHH
Q psy3476 20 KQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISL 96 (1417)
Q Consensus 20 ~~~~~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~---~i~~tqPrr~aa~~~ 96 (1417)
.+.........++++|+.|||++++++|++++.+++++||.|+||||||||+|||++|.|+. +|.||||||+||+++
T Consensus 32 ~~~~~~~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavsl 111 (674)
T KOG0922|consen 32 AQSYGKSTNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSL 111 (674)
T ss_pred ccccccccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHH
Confidence 34444556788999999999999999999999999999999999999999999999999985 499999999999999
Q ss_pred HHHHHHHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhh
Q psy3476 97 SKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKK 176 (1417)
Q Consensus 97 a~rva~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1417)
|+|||.|+++.+|+.|||.|||++.+++.|+|+|+|+|+|||++..|
T Consensus 112 A~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~D--------------------------------- 158 (674)
T KOG0922|consen 112 AKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKD--------------------------------- 158 (674)
T ss_pred HHHHHHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcC---------------------------------
Confidence 99999999999999999999999999999999999999999988665
Q ss_pred hhhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhcccccccee
Q psy3476 177 AEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLL 256 (1417)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~ 256 (1417)
T Consensus 159 -------------------------------------------------------------------------------- 158 (674)
T KOG0922|consen 159 -------------------------------------------------------------------------------- 158 (674)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcc
Q psy3476 257 GVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGD 336 (1417)
Q Consensus 257 ~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d 336 (1417)
+.|++|++|||||||||++++|
T Consensus 159 ----------------------------------------------------------p~LskYsvIIlDEAHERsl~TD 180 (674)
T KOG0922|consen 159 ----------------------------------------------------------PLLSKYSVIILDEAHERSLHTD 180 (674)
T ss_pred ----------------------------------------------------------CccccccEEEEechhhhhhHHH
Confidence 6789999999999999999999
Q ss_pred hHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHH
Q psy3476 337 FLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSII 416 (1417)
Q Consensus 337 ~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l 416 (1417)
++++++|.+.+.|+++|+|+||||+|++.|++|| ++++++.++||.|||++.|.+.+..++.. ..+..+
T Consensus 181 iLlGlLKki~~~R~~LklIimSATlda~kfS~yF-~~a~i~~i~GR~fPVei~y~~~p~~dYv~----------a~~~tv 249 (674)
T KOG0922|consen 181 ILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYF-NNAPILTIPGRTFPVEILYLKEPTADYVD----------AALITV 249 (674)
T ss_pred HHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHh-cCCceEeecCCCCceeEEeccCCchhhHH----------HHHHHH
Confidence 9999999999999999999999999999999999 68999999999999999999977766633 334444
Q ss_pred HhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCC---cEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhcc
Q psy3476 417 DKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQG---WIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETS 493 (1417)
Q Consensus 417 ~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~---~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~G 493 (1417)
.+++...+.|+||||++|++||+.+++.|.+..+.... ..+.|+||.||.++|.+||+..+.|.||||+||||||+|
T Consensus 250 ~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETS 329 (674)
T KOG0922|consen 250 IQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETS 329 (674)
T ss_pred HHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeee
Confidence 45555577899999999999999999999886543222 268999999999999999999999999999999999999
Q ss_pred CCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHHHhhccCCCcccccChH
Q psy3476 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSID 573 (1417)
Q Consensus 494 IdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~~l~~~~~pEI~r~~L~ 573 (1417)
||||+|.||||+|++|.+.|++..+++.+...|||++++.||+|||||++||+|||||++++|+.|++.+.|||.|++|.
T Consensus 330 lTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls 409 (674)
T KOG0922|consen 330 LTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLS 409 (674)
T ss_pred EEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhcccCCCCceeeechH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcCh-hhhhccCCCCChhhHHHHHhhhccCChhhH
Q psy3476 574 SLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTV 652 (1417)
Q Consensus 574 ~~lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~-LG~~ls~lpldp~lak~Ll~~~~f~cle~v 652 (1417)
.++|+||++|++|+..|+|++||+.+++..|++.|+.+||||.++.+|. +|+.|+.+|++|.++|||+.+..++|.+++
T Consensus 410 ~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~ 489 (674)
T KOG0922|consen 410 SAVLQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEI 489 (674)
T ss_pred HHHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchh
Confidence 9999999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHhhhccCCCccccCCCCChh-HHHHHhhcccCCCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHH
Q psy3476 653 LSLAAVLSVQSPFTNRAFRDPD-CETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRS 731 (1417)
Q Consensus 653 l~IaA~Lsv~~~F~~~~~~~~~-~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~ 731 (1417)
++|+|+||+++.|.+|..++.+ +...|.+|.+.+|||+|++|+|+.|.+. +..++||.+|+|+++.|+.+.++|.
T Consensus 490 l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~----~~~~~wC~en~i~~r~l~~a~~ir~ 565 (674)
T KOG0922|consen 490 LTIAAMLSVQSVFSRPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKEN----GTSKKWCKENFINARSLKRAKDIRK 565 (674)
T ss_pred hhheeeeeccceecCccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhc----CChhhHHHHhcccHHHHHHHHHHHH
Confidence 9999999999999999887777 8889999999999999999999999863 4678999999999999999999999
Q ss_pred HHHHHHHHCCCCcCCCCCCCChhHHHHHHhcCchHHHHHHH
Q psy3476 732 QFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIK 772 (1417)
Q Consensus 732 QL~~iL~~~gl~~~~~~~~~~~~s~~ral~~G~~~~L~~l~ 772 (1417)
||.+++.+.++...+++.+ .+.+.+|+.+|+|+|++.+.
T Consensus 566 QL~~i~~~~~~~~~s~~~d--~~~i~k~l~aGff~N~A~~~ 604 (674)
T KOG0922|consen 566 QLRRILDKFGLPVSSCGGD--MEKIRKCLCAGFFRNVAERD 604 (674)
T ss_pred HHHHHHHHcCCCccCCCCC--HHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988766555 68999999999999999986
No 2
>KOG0923|consensus
Probab=100.00 E-value=1.3e-111 Score=984.73 Aligned_cols=566 Identities=37% Similarity=0.611 Sum_probs=528.1
Q ss_pred hhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCC----cEEEecchHHHHHHHHHHH
Q psy3476 25 FSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ----RIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 25 ~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~----~i~~tqPrr~aa~~~a~rv 100 (1417)
..+...|++.|++||||.++++++.++++++|+||.|+||||||||+|||+.|+|+. +|.||||||+||+++|.||
T Consensus 251 ~~~~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRV 330 (902)
T KOG0923|consen 251 YERRESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARV 330 (902)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHH
Confidence 335678999999999999999999999999999999999999999999999999983 4999999999999999999
Q ss_pred HHHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhh
Q psy3476 101 AYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 180 (1417)
Q Consensus 101 a~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1417)
|+|++.++|+.|||.||||++++++|.|.|||+|||+|+++.+
T Consensus 331 A~EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~e------------------------------------- 373 (902)
T KOG0923|consen 331 AEEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSE------------------------------------- 373 (902)
T ss_pred HHHhCcccccccceEEEeccccCcceeeeeecchhHHHHHhcc-------------------------------------
Confidence 9999999999999999999999999999999999999998765
Q ss_pred hHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccC
Q psy3476 181 PKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVIS 260 (1417)
Q Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s 260 (1417)
T Consensus 374 -------------------------------------------------------------------------------- 373 (902)
T KOG0923|consen 374 -------------------------------------------------------------------------------- 373 (902)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHH
Q psy3476 261 PPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLG 340 (1417)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ 340 (1417)
+.|..|++|||||||||.+++|++.+
T Consensus 374 ------------------------------------------------------pdLasYSViiiDEAHERTL~TDILfg 399 (902)
T KOG0923|consen 374 ------------------------------------------------------PDLASYSVIIVDEAHERTLHTDILFG 399 (902)
T ss_pred ------------------------------------------------------ccccceeEEEeehhhhhhhhhhHHHH
Confidence 66889999999999999999999999
Q ss_pred HHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhC
Q psy3476 341 VIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKY 420 (1417)
Q Consensus 341 llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~ 420 (1417)
+++.+.+.|+++|++++|||+|++.|+.|| +++|++.+|||.|||+++|.+.+..++. ...+..|.+++
T Consensus 400 LvKDIar~RpdLKllIsSAT~DAekFS~fF-DdapIF~iPGRRyPVdi~Yt~~PEAdYl----------dAai~tVlqIH 468 (902)
T KOG0923|consen 400 LVKDIARFRPDLKLLISSATMDAEKFSAFF-DDAPIFRIPGRRYPVDIFYTKAPEADYL----------DAAIVTVLQIH 468 (902)
T ss_pred HHHHHHhhCCcceEEeeccccCHHHHHHhc-cCCcEEeccCcccceeeecccCCchhHH----------HHHHhhheeeE
Confidence 999999999999999999999999999999 7999999999999999999988877663 33445555666
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHHHhhh----hccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCc
Q psy3476 421 PRTERGDVLIFMSGISEISSIVRAAQEYN----EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITI 496 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~~~eie~la~~L~~~~----~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdI 496 (1417)
...+.|+||||++++++|+.+.+.|.+.. .+...+.++|+|+.||.+.|.+||++.|+|.||||+||||||+|+||
T Consensus 469 ~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTI 548 (902)
T KOG0923|consen 469 LTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTI 548 (902)
T ss_pred eccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceee
Confidence 66778999999999999999988886543 34567899999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH-HhhccCCCcccccChHHH
Q psy3476 497 DGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSL 575 (1417)
Q Consensus 497 P~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~-~l~~~~~pEI~r~~L~~~ 575 (1417)
|+|.||||+|++|+.+|++.+|+.+|...|||+|++.||+|||||+|||+|||||+...|. .+...+.|||+|.+|.++
T Consensus 549 dgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nv 628 (902)
T KOG0923|consen 549 DGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNV 628 (902)
T ss_pred cCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhH
Confidence 9999999999999999999999999999999999999999999999999999999999887 577788899999999999
Q ss_pred HHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHH
Q psy3476 576 LLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655 (1417)
Q Consensus 576 lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~I 655 (1417)
+|.||++||.|+..|+|++||+.+.+..|++.|+.+||++..|+||.+|+.|++||+||+++|||+.+..+.|.+++++|
T Consensus 629 VL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~Eiiti 708 (902)
T KOG0923|consen 629 VLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITI 708 (902)
T ss_pred HHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCC-CccccCCCCChhHHHHHhhcccCCCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy3476 656 AAVLSVQ-SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFK 734 (1417)
Q Consensus 656 aA~Lsv~-~~F~~~~~~~~~~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~QL~ 734 (1417)
+||||+. ++|++|......++.+++.|....|||++++++|+.|.+. ..+.+||.+|++.+++|.++.++|.||.
T Consensus 709 aamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es----~~s~~wC~e~~iq~~sm~rardir~qL~ 784 (902)
T KOG0923|consen 709 AAMLSVGASVFYRPKDKQVHADNARKNFEEPVGDHIVLLNVYNQWKES----KYSTQWCYENFIQYRSMKRARDIRDQLE 784 (902)
T ss_pred HHHHhcCchheecchhhhhhhhhhhhccCCCCcchhhhhHHHHHHhhc----chhhHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999985 7899998888888889999999999999999999999765 3578999999999999999999999999
Q ss_pred HHHHHCCCCcCCCCCCCChhHHHHHHhcCchHHHHHHHhhhccc
Q psy3476 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE 778 (1417)
Q Consensus 735 ~iL~~~gl~~~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~~ 778 (1417)
.++...++-..++.. +..++.+++.+|+|++++.+.+.+.+.
T Consensus 785 gll~~v~~~~~s~~~--~~~~irk~i~aGff~h~a~l~~~g~y~ 826 (902)
T KOG0923|consen 785 GLLERVEIDLSSNQN--DLDKIRKAITAGFFYHTAKLSKGGHYR 826 (902)
T ss_pred HHhhhccccccCChH--HHHHHHHHHhccccccceeccCCCcce
Confidence 999999887666433 578999999999999999998765443
No 3
>KOG0924|consensus
Probab=100.00 E-value=9.3e-110 Score=967.70 Aligned_cols=564 Identities=35% Similarity=0.602 Sum_probs=526.9
Q ss_pred hhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCC---cEEEecchHHHHHHHHHHHH
Q psy3476 25 FSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVA 101 (1417)
Q Consensus 25 ~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~---~i~~tqPrr~aa~~~a~rva 101 (1417)
|-.-+.++++|+.||++..++++++.|+.|+++||+|+||||||||++||++++|+. -|.||||||+||+++|+||+
T Consensus 342 fa~~k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa 421 (1042)
T KOG0924|consen 342 FASKKSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVA 421 (1042)
T ss_pred ccccchHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHH
Confidence 444456899999999999999999999999999999999999999999999999985 49999999999999999999
Q ss_pred HHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhh
Q psy3476 102 YETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAP 181 (1417)
Q Consensus 102 ~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1417)
.|++..+|..|||.||||+.+++.|+|.|+|+|+|||+...|
T Consensus 422 ~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d-------------------------------------- 463 (1042)
T KOG0924|consen 422 EEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKD-------------------------------------- 463 (1042)
T ss_pred HHhCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhh--------------------------------------
Confidence 999999999999999999999999999999999999987554
Q ss_pred HHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCC
Q psy3476 182 KRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISP 261 (1417)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~ 261 (1417)
T Consensus 464 -------------------------------------------------------------------------------- 463 (1042)
T KOG0924|consen 464 -------------------------------------------------------------------------------- 463 (1042)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHH
Q psy3476 262 PLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV 341 (1417)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~l 341 (1417)
..|.+|++||+||||||++++|++.++
T Consensus 464 -----------------------------------------------------~~L~kYSviImDEAHERslNtDilfGl 490 (1042)
T KOG0924|consen 464 -----------------------------------------------------RDLDKYSVIIMDEAHERSLNTDILFGL 490 (1042)
T ss_pred -----------------------------------------------------hhhhheeEEEechhhhcccchHHHHHH
Confidence 457789999999999999999999999
Q ss_pred HHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCC
Q psy3476 342 IKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP 421 (1417)
Q Consensus 342 lk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 421 (1417)
++.+...|.++|+|++|||+|++.|++|| ++||.+.++||+|||++.|...+..+|.. ..+....+++.
T Consensus 491 lk~~larRrdlKliVtSATm~a~kf~nfF-gn~p~f~IpGRTyPV~~~~~k~p~eDYVe----------aavkq~v~Ihl 559 (1042)
T KOG0924|consen 491 LKKVLARRRDLKLIVTSATMDAQKFSNFF-GNCPQFTIPGRTYPVEIMYTKTPVEDYVE----------AAVKQAVQIHL 559 (1042)
T ss_pred HHHHHHhhccceEEEeeccccHHHHHHHh-CCCceeeecCCccceEEEeccCchHHHHH----------HHHhhheEeec
Confidence 99999999999999999999999999999 58999999999999999999888877633 33343444455
Q ss_pred CCCCCcEEEEeCCHHHHHHHHHHHHhhhh-----ccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCc
Q psy3476 422 RTERGDVLIFMSGISEISSIVRAAQEYNE-----KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITI 496 (1417)
Q Consensus 422 ~~~~g~iLVFl~~~~eie~la~~L~~~~~-----~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdI 496 (1417)
....|++|||.+|+++|+..+..+..... ...++.|+|+||.||.+-|.++|+..+.|.+||||||||||+|+||
T Consensus 560 ~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi 639 (1042)
T KOG0924|consen 560 SGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTI 639 (1042)
T ss_pred cCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceee
Confidence 56779999999999999999888765332 2347899999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH-HhhccCCCcccccChHHH
Q psy3476 497 DGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSL 575 (1417)
Q Consensus 497 P~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~-~l~~~~~pEI~r~~L~~~ 575 (1417)
|+|.||||||+.|.++|++..|+..+..+|||+|++.||+|||||+|||.|||+||+..|. .|.+.+.|||+|++|.++
T Consensus 640 ~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nv 719 (1042)
T KOG0924|consen 640 PGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNV 719 (1042)
T ss_pred cceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhH
Confidence 9999999999999999999999999999999999999999999999999999999998776 799999999999999999
Q ss_pred HHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHH
Q psy3476 576 LLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655 (1417)
Q Consensus 576 lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~I 655 (1417)
+|.|+++|+.++..|+|++||+.+.+.+++..|..+|||+..|.||++|+.|+.||+||.++|||+.++.++|.+++++|
T Consensus 720 VLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsI 799 (1042)
T KOG0924|consen 720 VLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSI 799 (1042)
T ss_pred HHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCccccCCCCChhHHHHHhhcccCCCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy3476 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQ 735 (1417)
Q Consensus 656 aA~Lsv~~~F~~~~~~~~~~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~QL~~ 735 (1417)
++|||+...|++|..+++++..+|.+|...+|||||+||+|++|.+. ..+..||.+|+|+.++|..+.++|+||++
T Consensus 800 vSmLSvp~VF~rpker~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~----~~~~~WCnd~~l~~kaL~~arevR~ql~~ 875 (1042)
T KOG0924|consen 800 VSMLSVPAVFYRPKEREEEADAAREKFQVPESDHLTLLNVFNQWRKN----KYSSMWCNDHYLQVKALKKAREVRRQLLE 875 (1042)
T ss_pred HHHhcccceeeccccchhhhhhHHhhhcCCCCchhhHHHHHHHHHhc----CCchhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865 35678999999999999999999999999
Q ss_pred HHHHCCCCcCCCCCCCChhHHHHHHhcCchHHHHHHHhhhcc
Q psy3476 736 VLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777 (1417)
Q Consensus 736 iL~~~gl~~~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~ 777 (1417)
+|++.++...++ .+.+-+++|+++|+|-|.+.++..+.|
T Consensus 876 il~~l~~~l~S~---~dwdivrKCIcs~~fhn~Arlkg~g~Y 914 (1042)
T KOG0924|consen 876 ILKQLKLPLISS---DDWDIVRKCICSAYFHNAARLKGIGEY 914 (1042)
T ss_pred HHHHcCCCcccC---chHHHHHHHHHHHHHHHHHHhccCceE
Confidence 999999987765 458999999999999999999876655
No 4
>KOG0920|consensus
Probab=100.00 E-value=5e-106 Score=1001.79 Aligned_cols=554 Identities=38% Similarity=0.650 Sum_probs=501.6
Q ss_pred hhhhhhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHH
Q psy3476 20 KQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACI 94 (1417)
Q Consensus 20 ~~~~~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~ 94 (1417)
.++.+.+...++++.|++||++.++++|+++|.+++|++|+|+||||||||+||||++.. .++|+||||||++|+
T Consensus 154 ~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAI 233 (924)
T KOG0920|consen 154 SEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAI 233 (924)
T ss_pred chhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHH
Confidence 344556678899999999999999999999999999999999999999999999999864 689999999999999
Q ss_pred HHHHHHHHHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHh
Q psy3476 95 SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKR 174 (1417)
Q Consensus 95 ~~a~rva~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1417)
++|+|||+|+++..|..|||+||++++.+..|+++|||+|+|||.++.|
T Consensus 234 svAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~------------------------------- 282 (924)
T KOG0920|consen 234 SVAERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSD------------------------------- 282 (924)
T ss_pred HHHHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccC-------------------------------
Confidence 9999999999999999999999999999999999999999999998765
Q ss_pred hhhhhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccc
Q psy3476 175 KKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDF 254 (1417)
Q Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~ 254 (1417)
T Consensus 283 -------------------------------------------------------------------------------- 282 (924)
T KOG0920|consen 283 -------------------------------------------------------------------------------- 282 (924)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccC
Q psy3476 255 LLGVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLH 334 (1417)
Q Consensus 255 l~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~ 334 (1417)
+.+.++++||+||+|||+++
T Consensus 283 ------------------------------------------------------------~~l~~vthiivDEVHER~i~ 302 (924)
T KOG0920|consen 283 ------------------------------------------------------------PTLSGVTHIIVDEVHERSIN 302 (924)
T ss_pred ------------------------------------------------------------cccccCceeeeeeEEEccCC
Confidence 56778999999999999999
Q ss_pred cchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEecccccccc--------cc---ccC
Q psy3476 335 GDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDR--------TK---SEK 403 (1417)
Q Consensus 335 ~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~--------~~---~~~ 403 (1417)
+||++.+++.++..++++|+|+||||+|++.|++|| +++++++++|++||+..+|........ .. ...
T Consensus 303 ~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF-~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~ 381 (924)
T KOG0920|consen 303 TDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYF-GGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERS 381 (924)
T ss_pred cccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHh-CCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccC
Confidence 999999999999999999999999999999999999 599999999999999988754332110 00 000
Q ss_pred ----------CCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc--cCCcEEEEecCCCCHHHHHH
Q psy3476 404 ----------LDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK--SQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 404 ----------~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~--~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
.....+..+.+.+.........|.||||+||.++|..+.+.|...... ..++.+.++||.|+.++|+.
T Consensus 382 ~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~ 461 (924)
T KOG0920|consen 382 QLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQA 461 (924)
T ss_pred ccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHH
Confidence 001123344445555555566899999999999999999999753322 24588999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEec
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLY 551 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~ 551 (1417)
||...+.|.+|||+||||||+|||||||.||||||++|++.||+..+++.+...|+|++++.||+|||||..+|+||+||
T Consensus 462 VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~ 541 (924)
T KOG0920|consen 462 VFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLY 541 (924)
T ss_pred hcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhhc-cCCCcccccChHHHHHHHHhhCCCCCcCC--CCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhcc
Q psy3476 552 SEEQYSLLAE-YSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLS 628 (1417)
Q Consensus 552 t~~~~~~l~~-~~~pEI~r~~L~~~lL~lk~lgi~~~~~f--~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls 628 (1417)
++..|+.+.. ++.|||.|.+|.+++|++|.++.+++..| ..++||+.+++..|+..|.++||++.+++||+||+.++
T Consensus 542 ~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la 621 (924)
T KOG0920|consen 542 TRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLA 621 (924)
T ss_pred chhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHH
Confidence 9999998776 99999999999999999999998888877 47999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCChhHHHHHhhcccC-CCChHHHHHHHHHHHHhhhhh-
Q psy3476 629 DLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESN-HGDPLTVLNAYKEWLGVKKDR- 706 (1417)
Q Consensus 629 ~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~~~-~sD~ltlln~f~~w~~~~~~~- 706 (1417)
.||+||++|||+++|+.|+|++++++|||+|+..+||..+..++...+++++.|..+ .|||++++++|+.|.++...+
T Consensus 622 ~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~ 701 (924)
T KOG0920|consen 622 SLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGP 701 (924)
T ss_pred hCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999888888754 599999999999999886542
Q ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCCCcC
Q psy3476 707 VRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITD 745 (1417)
Q Consensus 707 ~~~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~gl~~~ 745 (1417)
...++||++|+|+..+|+++..+|+||.+.|.+.|++..
T Consensus 702 ~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~ 740 (924)
T KOG0920|consen 702 SAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPI 740 (924)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccC
Confidence 367899999999999999999999999999999999754
No 5
>KOG0925|consensus
Probab=100.00 E-value=1.7e-102 Score=883.31 Aligned_cols=584 Identities=33% Similarity=0.538 Sum_probs=536.3
Q ss_pred HhhhhhhhhhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC---CcEEEecchHHH
Q psy3476 16 YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92 (1417)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~---~~i~~tqPrr~a 92 (1417)
...|..++.-+++.+|.+.|..||+|.++.+.++.+.+|+.++++|+||||||||||||.++... ..|+||||||+|
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrva 103 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVA 103 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHH
Confidence 44567778888899999999999999999999999999999999999999999999999998654 469999999999
Q ss_pred HHHHHHHHHHHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHH
Q psy3476 93 CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAI 172 (1417)
Q Consensus 93 a~~~a~rva~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (1417)
|+++|+|||.||.-.+|..|||.||+|++.+++|-+.|||+|||+|+.++|
T Consensus 104 amsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~----------------------------- 154 (699)
T KOG0925|consen 104 AMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSD----------------------------- 154 (699)
T ss_pred HHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhC-----------------------------
Confidence 999999999999999999999999999999999999999999999987665
Q ss_pred HhhhhhhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccc
Q psy3476 173 KRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYG 252 (1417)
Q Consensus 173 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~ 252 (1417)
T Consensus 155 -------------------------------------------------------------------------------- 154 (699)
T KOG0925|consen 155 -------------------------------------------------------------------------------- 154 (699)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccc
Q psy3476 253 DFLLGVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERH 332 (1417)
Q Consensus 253 d~l~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~ 332 (1417)
+.+..|++||+||||||+
T Consensus 155 --------------------------------------------------------------p~l~~y~viiLDeahERt 172 (699)
T KOG0925|consen 155 --------------------------------------------------------------PLLGRYGVIILDEAHERT 172 (699)
T ss_pred --------------------------------------------------------------cccccccEEEechhhhhh
Confidence 668889999999999999
Q ss_pred cCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHH
Q psy3476 333 LHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRI 412 (1417)
Q Consensus 333 l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~i 412 (1417)
+.+|.++++++.+...|+++|+|+||||+++.+|..|| +++|++.++| .+|++++|.+.+..++ ++..
T Consensus 173 lATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf-~n~Pll~vpg-~~PvEi~Yt~e~erDy----------lEaa 240 (699)
T KOG0925|consen 173 LATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYF-GNAPLLAVPG-THPVEIFYTPEPERDY----------LEAA 240 (699)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHh-CCCCeeecCC-CCceEEEecCCCChhH----------HHHH
Confidence 99999999999999999999999999999999999999 7999999999 9999999999887766 4455
Q ss_pred HHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHh----hhhccCCcEEEEecCCCCHHHHHHHhccCCCC-----CceE
Q psy3476 413 LSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG-----LRKC 483 (1417)
Q Consensus 413 l~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~----~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G-----~rkV 483 (1417)
+..+.+++...++|+||||+++.++|+.+++.+.. +........|+||| +.+|+.+|++.+.. .|||
T Consensus 241 irtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~Rkv 316 (699)
T KOG0925|consen 241 IRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKV 316 (699)
T ss_pred HHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceE
Confidence 66666666667799999999999999999999874 23344678999999 77888999988743 4899
Q ss_pred EEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH-Hhhcc
Q psy3476 484 IVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS-LLAEY 562 (1417)
Q Consensus 484 LVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~-~l~~~ 562 (1417)
+|+||+||++++|++|.+|||.|+.|+++|++.-..+++...||||+++.||+|||||+.||+||+||+++.++ .|.+.
T Consensus 317 Vvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~ 396 (699)
T KOG0925|consen 317 VVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQ 396 (699)
T ss_pred EEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 69999
Q ss_pred CCCcccccChHHHHHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHh
Q psy3476 563 STPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVF 642 (1417)
Q Consensus 563 ~~pEI~r~~L~~~lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~ 642 (1417)
+.|||++.+|.+++|+||.+|+.++..|+|++||.++.+.+|++.|..++|+|++|+||++|..||+||+||.+||||+.
T Consensus 397 typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~ 476 (699)
T KOG0925|consen 397 TYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIG 476 (699)
T ss_pred CcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhhHHHHhhhccCCCccccCC-CCChhHHHHHhhcccCCCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHH
Q psy3476 643 GSMFHQIDTVLSLAAVLSVQSPFTNRA-FRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQ 721 (1417)
Q Consensus 643 ~~~f~cle~vl~IaA~Lsv~~~F~~~~-~~~~~~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~ 721 (1417)
++.|.|.+++++|+||||+.+.|.+|. ..++.+.++++.|++.+|||+|++|+|++|++. ....+||+.||||++
T Consensus 477 S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~----~~~~~WC~~~flN~r 552 (699)
T KOG0925|consen 477 SCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLNVYHAFKQN----NEDPNWCYDNFLNYR 552 (699)
T ss_pred cCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhc----CCChhHHHHhcccHH
Confidence 999999999999999999999999987 667778899999999999999999999999864 246789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcCCCC--CCCChhHHHHHHhcCchHHHHHHHhhhccccccccccccccc
Q psy3476 722 RFYEVTKLRSQFKQVLGDSGLITDIPG--PDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 790 (1417)
Q Consensus 722 ~L~ei~~lr~QL~~iL~~~gl~~~~~~--~~~~~~s~~ral~~G~~~~L~~l~~~~~~~~~r~rk~l~~~~ 790 (1417)
+|..+.++|.||.+++.++++...++. +..++..+++|+.+|+|++++++.++..|-.-+...+..+..
T Consensus 553 al~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhp 623 (699)
T KOG0925|consen 553 ALKSADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHP 623 (699)
T ss_pred HHHhHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEecc
Confidence 999999999999999999999766643 344577899999999999999998877765555555555544
No 6
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-95 Score=914.58 Aligned_cols=568 Identities=37% Similarity=0.600 Sum_probs=504.1
Q ss_pred hhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC---CcEEEecchHHHHHHHHHHH
Q psy3476 24 KFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 24 ~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~---~~i~~tqPrr~aa~~~a~rv 100 (1417)
.-.+...+.++|..||++..+++|++++.+++++||+||||||||||+||++++.++ ..|.||||||+||+++|+||
T Consensus 35 ~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~Rv 114 (845)
T COG1643 35 RSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERV 114 (845)
T ss_pred cccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHH
Confidence 344667889999999999999999999999999999999999999999999999986 58999999999999999999
Q ss_pred HHHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhh
Q psy3476 101 AYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 180 (1417)
Q Consensus 101 a~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1417)
|+|+++++|..|||.||||++++++|+|.|||+|+|+|+++.|
T Consensus 115 Aeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D------------------------------------- 157 (845)
T COG1643 115 AEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQND------------------------------------- 157 (845)
T ss_pred HHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhC-------------------------------------
Confidence 9999999999999999999999999999999999999998776
Q ss_pred hHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccC
Q psy3476 181 PKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVIS 260 (1417)
Q Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s 260 (1417)
T Consensus 158 -------------------------------------------------------------------------------- 157 (845)
T COG1643 158 -------------------------------------------------------------------------------- 157 (845)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHH
Q psy3476 261 PPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLG 340 (1417)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ 340 (1417)
+.|+.|++||+||+|||++++|++++
T Consensus 158 ------------------------------------------------------~~Ls~ys~vIiDEaHERSl~tDilLg 183 (845)
T COG1643 158 ------------------------------------------------------PLLSGYSVVIIDEAHERSLNTDILLG 183 (845)
T ss_pred ------------------------------------------------------cccccCCEEEEcchhhhhHHHHHHHH
Confidence 56889999999999999999999999
Q ss_pred HHHHHhccCC-CCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhh
Q psy3476 341 VIKCLLHSTA-EVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKK 419 (1417)
Q Consensus 341 llk~l~~~r~-~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 419 (1417)
+++.+...++ ++|+|+||||+|.+.|++|| +++|++.++||.|||+++|.+....++. ....+...+...
T Consensus 184 llk~~~~~rr~DLKiIimSATld~~rfs~~f-~~apvi~i~GR~fPVei~Y~~~~~~d~~--------l~~ai~~~v~~~ 254 (845)
T COG1643 184 LLKDLLARRRDDLKLIIMSATLDAERFSAYF-GNAPVIEIEGRTYPVEIRYLPEAEADYI--------LLDAIVAAVDIH 254 (845)
T ss_pred HHHHHHhhcCCCceEEEEecccCHHHHHHHc-CCCCEEEecCCccceEEEecCCCCcchh--------HHHHHHHHHHHh
Confidence 9999766655 89999999999999999999 6799999999999999999876654431 123344444444
Q ss_pred CCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCe
Q psy3476 420 YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGI 499 (1417)
Q Consensus 420 ~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V 499 (1417)
. ..+.|+||||+||.+||+.+++.|.+ ........|+||||.|+.++|.++|++.+.|+||||+||||||+|||||+|
T Consensus 255 ~-~~~~GdILvFLpG~~EI~~~~~~L~~-~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gI 332 (845)
T COG1643 255 L-REGSGSILVFLPGQREIERTAEWLEK-AELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGI 332 (845)
T ss_pred c-cCCCCCEEEECCcHHHHHHHHHHHHh-ccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCe
Confidence 4 46689999999999999999999987 111156899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHHHhhccCCCcccccChHHHHHHH
Q psy3476 500 RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSL 579 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~~l~~~~~pEI~r~~L~~~lL~l 579 (1417)
+||||||+.|++.||+.+++..+.+.|||||++.||+|||||++||+||+||++++|..|+.++.|||.|++|++++|+|
T Consensus 333 r~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l 412 (845)
T COG1643 333 RYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQL 412 (845)
T ss_pred EEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCC-CCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhh
Q psy3476 580 VCMGLG-DVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658 (1417)
Q Consensus 580 k~lgi~-~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~ 658 (1417)
+++|++ ++..|+|++||+..++..|++.|..+||||.++.||++|+.|+.||+||++|+||+.+..++|++++++|+|+
T Consensus 413 ~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~ 492 (845)
T COG1643 413 KSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASM 492 (845)
T ss_pred HhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHh
Confidence 999996 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC---ccccCCCCCh---hHHHHH-hhccc---CCCChHHHHHHHHHHHHhhhhh--chHHHHHHHcCCCHHHHHHH
Q psy3476 659 LSVQS---PFTNRAFRDP---DCETAR-KELES---NHGDPLTVLNAYKEWLGVKKDR--VRSKKWCKRRGIEEQRFYEV 726 (1417)
Q Consensus 659 Lsv~~---~F~~~~~~~~---~~~~~r-~~f~~---~~sD~ltlln~f~~w~~~~~~~--~~~~~WC~~~~L~~~~L~ei 726 (1417)
||+++ .|..+..... +...++ ..+.+ ..+||++++++|..|+..+... ....+||..+.++.+.|.++
T Consensus 493 Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 572 (845)
T COG1643 493 LSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRA 572 (845)
T ss_pred hccCCCcchhccccchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhh
Confidence 99999 6777655444 222222 23334 5799999999999998765211 25679999999999999999
Q ss_pred HHHHHHHHHHHHH-CCCCcCCCCCCC----------------ChhHHHHHHhcCchHHHHHHHh
Q psy3476 727 TKLRSQFKQVLGD-SGLITDIPGPDA----------------SLSSRERALRHGEIKLLQAIKR 773 (1417)
Q Consensus 727 ~~lr~QL~~iL~~-~gl~~~~~~~~~----------------~~~s~~ral~~G~~~~L~~l~~ 773 (1417)
.+++.|+...... .|.+......+. ..+...+++.+|.+.++.++..
T Consensus 573 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~ 636 (845)
T COG1643 573 PWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQL 636 (845)
T ss_pred HHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeeec
Confidence 9999999888877 554433222221 1356778888888888877653
No 7
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=9.7e-95 Score=933.30 Aligned_cols=559 Identities=35% Similarity=0.565 Sum_probs=502.9
Q ss_pred HHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC---CcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 32 RETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 32 ~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~---~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
..++.+|||+.++++|+++|.+++++||+|+||||||||+||++++.+. +.|+||||||+||+++|+||++|+++.+
T Consensus 67 ~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 67 ITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 4467899999999999999999999999999999999999999999765 3799999999999999999999999999
Q ss_pred CCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhc
Q psy3476 109 SNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 188 (1417)
Q Consensus 109 g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 188 (1417)
|..|||.|+++++.+..|+|+|||+|+|++++..+
T Consensus 147 G~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d--------------------------------------------- 181 (1294)
T PRK11131 147 GGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQD--------------------------------------------- 181 (1294)
T ss_pred cceeceeecCccccCCCCCEEEEChHHHHHHHhcC---------------------------------------------
Confidence 99999999999999999999999999999987544
Q ss_pred cccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCc
Q psy3476 189 ADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGE 268 (1417)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~ 268 (1417)
T Consensus 182 -------------------------------------------------------------------------------- 181 (1294)
T PRK11131 182 -------------------------------------------------------------------------------- 181 (1294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhcc
Q psy3476 269 IVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHS 348 (1417)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~ 348 (1417)
+.|++|++|||||||||++++||++++++.+...
T Consensus 182 ----------------------------------------------~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~ 215 (1294)
T PRK11131 182 ----------------------------------------------RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR 215 (1294)
T ss_pred ----------------------------------------------CccccCcEEEecCccccccccchHHHHHHHhhhc
Confidence 4578899999999999999999999999998888
Q ss_pred CCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcE
Q psy3476 349 TAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428 (1417)
Q Consensus 349 r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~i 428 (1417)
+++.|+|+||||++.+.|+++| .+++++.++|+.+|++++|.+....... ...+....++..+.... ....|++
T Consensus 216 rpdlKvILmSATid~e~fs~~F-~~apvI~V~Gr~~pVei~y~p~~~~~~~----~~~d~l~~ll~~V~~l~-~~~~GdI 289 (1294)
T PRK11131 216 RPDLKVIITSATIDPERFSRHF-NNAPIIEVSGRTYPVEVRYRPIVEEADD----TERDQLQAIFDAVDELG-REGPGDI 289 (1294)
T ss_pred CCCceEEEeeCCCCHHHHHHHc-CCCCEEEEcCccccceEEEeecccccch----hhHHHHHHHHHHHHHHh-cCCCCCE
Confidence 8899999999999999999999 5688999999999999999875432110 01112333444444333 3457899
Q ss_pred EEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcc
Q psy3476 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKV 508 (1417)
Q Consensus 429 LVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~ 508 (1417)
||||||+++|+.+++.|.+.. .....+.++||+|++++|.++|+. .|.++|||||||||+|||||+|+||||+|++
T Consensus 290 LVFLpg~~EIe~lae~L~~~~--~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~ 365 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLN--LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTA 365 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcC--CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCc
Confidence 999999999999999998632 234568999999999999999986 5789999999999999999999999999999
Q ss_pred cceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHHHhhccCCCcccccChHHHHHHHHhhCCCCCc
Q psy3476 509 KEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVR 588 (1417)
Q Consensus 509 k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~~l~~~~~pEI~r~~L~~~lL~lk~lgi~~~~ 588 (1417)
|.+.||+.++++.+...|||+++|.||+|||||.++|+||+||++++|..+++++.|||+|++|.+++|+++++|++++.
T Consensus 366 k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~ 445 (1294)
T PRK11131 366 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIA 445 (1294)
T ss_pred cccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhHHHHHHHHhcCCCCCC-----CCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCC
Q psy3476 589 KFPFLEAPPAENIESSVRSLTQHGAIDSK-----ERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663 (1417)
Q Consensus 589 ~f~~l~pP~~~~l~~Al~~L~~lGaId~~-----~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~ 663 (1417)
.|+|++||+.++|..|++.|.++||||.+ ++||++|+.|++||+||++||||+.|+.|+|++++++|+|+||+++
T Consensus 446 ~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~d 525 (1294)
T PRK11131 446 AFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQD 525 (1294)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999864 4799999999999999999999999999999999999999999999
Q ss_pred ccccCCCCChhHHHHHhhcccCCCChHHHHHHHHHHHHhhhh--hchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCC
Q psy3476 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKD--RVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSG 741 (1417)
Q Consensus 664 ~F~~~~~~~~~~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~--~~~~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~g 741 (1417)
||..|..++.+++..++.|.+..|||++++|+|+.|.+..+. ....++||++||||+.+|+++.+++.||.++++++|
T Consensus 526 pf~~p~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g 605 (1294)
T PRK11131 526 PRERPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELG 605 (1294)
T ss_pred cccCCchhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 999998888888889999999999999999999999764321 224578999999999999999999999999999999
Q ss_pred CCcCCCCCCCChhHHHHHHhcCchHHHHHHHh
Q psy3476 742 LITDIPGPDASLSSRERALRHGEIKLLQAIKR 773 (1417)
Q Consensus 742 l~~~~~~~~~~~~s~~ral~~G~~~~L~~l~~ 773 (1417)
+....+ +.+.+.+++|+.+|++.|++....
T Consensus 606 ~~~~~~--~~~~~~i~~all~G~~~nva~~~~ 635 (1294)
T PRK11131 606 IPVNSE--PAEYREIHTALLTGLLSHIGMKDA 635 (1294)
T ss_pred CCCCCC--cccHHHHHHHHHhhcHHHHeeccC
Confidence 976553 335889999999999999986543
No 8
>KOG0926|consensus
Probab=100.00 E-value=4.9e-94 Score=847.95 Aligned_cols=541 Identities=37% Similarity=0.588 Sum_probs=467.9
Q ss_pred hchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCC--------cEEEecchHHHHHHHH
Q psy3476 26 STLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ--------RIACTQPRRIACISLS 97 (1417)
Q Consensus 26 ~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~--------~i~~tqPrr~aa~~~a 97 (1417)
++..+||+.|..|||....++|+++|..|.+|||||+||||||||+|||++|+|+. -|.+|||||+||+++|
T Consensus 243 ~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamA 322 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMA 322 (1172)
T ss_pred cCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999983 3999999999999999
Q ss_pred HHHHHHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhh
Q psy3476 98 KRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKA 177 (1417)
Q Consensus 98 ~rva~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1417)
+|||.|++. +|+.|||+|||++..++.|+|+|||+|+|||++.+|
T Consensus 323 kRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~D---------------------------------- 367 (1172)
T KOG0926|consen 323 KRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIEND---------------------------------- 367 (1172)
T ss_pred HHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHh----------------------------------
Confidence 999999998 999999999999999999999999999999998764
Q ss_pred hhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceee
Q psy3476 178 EEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLG 257 (1417)
Q Consensus 178 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~ 257 (1417)
++|+.||+||+||+|||++|+|+|||
T Consensus 368 ------------------------------------------------------flL~kYSvIIlDEAHERSvnTDILiG 393 (1172)
T KOG0926|consen 368 ------------------------------------------------------FLLTKYSVIILDEAHERSVNTDILIG 393 (1172)
T ss_pred ------------------------------------------------------HhhhhceeEEechhhhccchHHHHHH
Confidence 56777888888888888888888877
Q ss_pred ccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcch
Q psy3476 258 VISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337 (1417)
Q Consensus 258 ~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ 337 (1417)
|+|+....+. |-|
T Consensus 394 mLSRiV~LR~-----------------------------------------------------------k~~-------- 406 (1172)
T KOG0926|consen 394 MLSRIVPLRQ-----------------------------------------------------------KYY-------- 406 (1172)
T ss_pred HHHHHHHHHH-----------------------------------------------------------HHh--------
Confidence 7774221110 000
Q ss_pred HHHHHHHHhccCCCCcEEEEccCCCHHHHH---HHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHH
Q psy3476 338 LLGVIKCLLHSTAEVKIILMSATINIELFH---TYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILS 414 (1417)
Q Consensus 338 ll~llk~l~~~r~~~qvIlmSATln~~~~~---~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~ 414 (1417)
+. ...-..+|+|+||||+-+.+|. ..|...+|++.++.|+|||.+||......+|... .+ +...
T Consensus 407 -----ke-~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~e------Af-rKtc 473 (1172)
T KOG0926|consen 407 -----KE-QCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAE------AF-RKTC 473 (1172)
T ss_pred -----hh-hcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHH------HH-HHHH
Confidence 00 0123578999999999888887 4676688999999999999999988776665331 12 2333
Q ss_pred HHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh--------------------------------------------
Q psy3476 415 IIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE-------------------------------------------- 450 (1417)
Q Consensus 415 ~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~-------------------------------------------- 450 (1417)
.|++. .+.|.||||++|+.++..+++.|++..+
T Consensus 474 ~IH~k---LP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~e 550 (1172)
T KOG0926|consen 474 KIHKK---LPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDE 550 (1172)
T ss_pred HHhhc---CCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchh
Confidence 44544 4589999999999999999999976310
Q ss_pred --------------------------------------------------ccCCcEEEEecCCCCHHHHHHHhccCCCCC
Q psy3476 451 --------------------------------------------------KSQGWIVLPLHSTLSLEEQDRVFHYAPEGL 480 (1417)
Q Consensus 451 --------------------------------------------------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~ 480 (1417)
....+-|+||||-|+.++|.+||+..+.|.
T Consensus 551 d~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~ 630 (1172)
T KOG0926|consen 551 DIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGE 630 (1172)
T ss_pred hhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCc
Confidence 011457999999999999999999999999
Q ss_pred ceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH-Hh
Q psy3476 481 RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS-LL 559 (1417)
Q Consensus 481 rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~-~l 559 (1417)
|-||||||+||+|+|||+|+||||||+.|++.||..+|+++|...|||+|++.||+|||||+|||+|||||+...|+ .|
T Consensus 631 RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~F 710 (1172)
T KOG0926|consen 631 RLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDF 710 (1172)
T ss_pred eEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 79
Q ss_pred hccCCCcccccChHHHHHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHH
Q psy3476 560 AEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKM 639 (1417)
Q Consensus 560 ~~~~~pEI~r~~L~~~lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~ 639 (1417)
.++..|||++.|.++++|+||+|+|.++..|||++||...+++.|...|..+||||.+|.+|+||+.||.||+.|+++||
T Consensus 711 e~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKm 790 (1172)
T KOG0926|consen 711 EEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKM 790 (1172)
T ss_pred hhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCChhhHHHHhhhccCCCccccCCCC-----------Ch-------------hH--------HHHHhhcccCCC
Q psy3476 640 LVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFR-----------DP-------------DC--------ETARKELESNHG 687 (1417)
Q Consensus 640 Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~-----------~~-------------~~--------~~~r~~f~~~~s 687 (1417)
|+.+.+..|+...+.++++||+..+|...... ++ +. .+++..|....|
T Consensus 791 L~~~~Q~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~s 870 (1172)
T KOG0926|consen 791 LATSDQHNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDS 870 (1172)
T ss_pred HHHHHhhcchhHHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCc
Confidence 99999999999999999999999888652110 00 00 113344555678
Q ss_pred ChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCC
Q psy3476 688 DPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742 (1417)
Q Consensus 688 D~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~gl 742 (1417)
|.++++.+..++..+. +..+||..|||..++|.|+.+||.||..++...++
T Consensus 871 d~l~Ll~Av~a~ey~~----~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i 921 (1172)
T KOG0926|consen 871 DALVLLSAVSAAEYAE----NGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNI 921 (1172)
T ss_pred cHHHHHHHHHHHHhhh----hcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999988876553 34459999999999999999999999999985544
No 9
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.5e-92 Score=916.84 Aligned_cols=559 Identities=35% Similarity=0.573 Sum_probs=502.6
Q ss_pred HHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC---CcEEEecchHHHHHHHHHHHHHHHccc
Q psy3476 31 IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQ 107 (1417)
Q Consensus 31 ~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~---~~i~~tqPrr~aa~~~a~rva~e~~~~ 107 (1417)
...++..|||+.++++|+++|.+++++||+|+||||||||+|+++++.+. ++|+||||||+||+++|+|||+|+++.
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~ 138 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTP 138 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCC
Confidence 34567889999999999999999999999999999999999999999875 479999999999999999999999999
Q ss_pred cCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhh
Q psy3476 108 YSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKML 187 (1417)
Q Consensus 108 ~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (1417)
+|..|||+||++++.+.+|+|+|||+|+|+++++.|
T Consensus 139 lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d-------------------------------------------- 174 (1283)
T TIGR01967 139 LGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQD-------------------------------------------- 174 (1283)
T ss_pred cceEEeeEEcCCcccCCCceeeeccccHHHHHhhhC--------------------------------------------
Confidence 999999999999999999999999999999987654
Q ss_pred ccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCC
Q psy3476 188 KADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGG 267 (1417)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~ 267 (1417)
T Consensus 175 -------------------------------------------------------------------------------- 174 (1283)
T TIGR01967 175 -------------------------------------------------------------------------------- 174 (1283)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhc
Q psy3476 268 EIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 347 (1417)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~ 347 (1417)
+.|++|++|||||||||++++|+++++++.+..
T Consensus 175 -----------------------------------------------~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~ 207 (1283)
T TIGR01967 175 -----------------------------------------------RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP 207 (1283)
T ss_pred -----------------------------------------------cccccCcEEEEcCcchhhccchhHHHHHHHHHh
Confidence 457889999999999999999999999999988
Q ss_pred cCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCc
Q psy3476 348 STAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427 (1417)
Q Consensus 348 ~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~ 427 (1417)
.++++|+|+||||++.+.|++|| .+++++.++|+.+|++++|.+........ +......++..+.+.+. ...|+
T Consensus 208 ~rpdLKlIlmSATld~~~fa~~F-~~apvI~V~Gr~~PVev~Y~~~~~~~~~~----~~~~~~~i~~~I~~l~~-~~~Gd 281 (1283)
T TIGR01967 208 RRPDLKIIITSATIDPERFSRHF-NNAPIIEVSGRTYPVEVRYRPLVEEQEDD----DLDQLEAILDAVDELFA-EGPGD 281 (1283)
T ss_pred hCCCCeEEEEeCCcCHHHHHHHh-cCCCEEEECCCcccceeEEecccccccch----hhhHHHHHHHHHHHHHh-hCCCC
Confidence 88999999999999999999999 57899999999999999997653211100 11122334444544433 35689
Q ss_pred EEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCc
Q psy3476 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGK 507 (1417)
Q Consensus 428 iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~ 507 (1417)
||||+||+++|+.+++.|.+.. ..++.+.++||+|++++|.++|+.+ +.+||||||||||+|||||+|+||||+|+
T Consensus 282 ILVFLpg~~EI~~l~~~L~~~~--~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl 357 (1283)
T TIGR01967 282 ILIFLPGEREIRDAAEILRKRN--LRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGT 357 (1283)
T ss_pred EEEeCCCHHHHHHHHHHHHhcC--CCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCC
Confidence 9999999999999999998632 2357899999999999999999875 35899999999999999999999999999
Q ss_pred ccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHHHhhccCCCcccccChHHHHHHHHhhCCCCC
Q psy3476 508 VKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDV 587 (1417)
Q Consensus 508 ~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~~l~~~~~pEI~r~~L~~~lL~lk~lgi~~~ 587 (1417)
.|.+.||+.++++.+...|||+++|.||+|||||.++|+||+||+++++..+++++.|||+|.+|.+++|+++++|++++
T Consensus 358 ~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di 437 (1283)
T TIGR01967 358 ARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDI 437 (1283)
T ss_pred ccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcchhHHHHHHHHhcCCCCCCC---CcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCc
Q psy3476 588 RKFPFLEAPPAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664 (1417)
Q Consensus 588 ~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~---~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~ 664 (1417)
..|+|++||+..++..|++.|..+||||.++ +||++|+.|+.||++|++||||+.|..++|++++++|+|+||+++|
T Consensus 438 ~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp 517 (1283)
T TIGR01967 438 AAFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDP 517 (1283)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999988 7999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChhHHHHHhhcccCCCChHHHHHHHHHHHHhhhhh--chHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCC
Q psy3476 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDR--VRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742 (1417)
Q Consensus 665 F~~~~~~~~~~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~~--~~~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~gl 742 (1417)
|..|..++..++..++.|....|||++++|+|+.|.+.+... ...++||++||||+.+|+++.++++||.++++++|+
T Consensus 518 ~~~p~~~~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~ 597 (1283)
T TIGR01967 518 RERPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGL 597 (1283)
T ss_pred CCCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999888888888899999999999999999999997643221 245799999999999999999999999999999998
Q ss_pred CcCCCCCCCChhHHHHHHhcCchHHHHHHH
Q psy3476 743 ITDIPGPDASLSSRERALRHGEIKLLQAIK 772 (1417)
Q Consensus 743 ~~~~~~~~~~~~s~~ral~~G~~~~L~~l~ 772 (1417)
....+. .+.+.+.+++.+|++.+++...
T Consensus 598 ~~~~~~--~~~~~i~~~l~~g~~~~iA~~~ 625 (1283)
T TIGR01967 598 KLNEEP--ADYDAIHKALLSGLLSQIGMKD 625 (1283)
T ss_pred CcCCCC--ccHHHHHHHHHHhhHHHHheeC
Confidence 654432 2456799999999999988654
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.5e-76 Score=755.18 Aligned_cols=444 Identities=32% Similarity=0.496 Sum_probs=405.2
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC--CcEEEecchHHHHHHHHHHHHHHHccccCCeEEEE
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF--QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQ 115 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~--~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ 115 (1417)
|||+.+.++|+++|.+++++||+|+|||||||++|+++++... ++|+|+||||++|+++|+|+++++++.+|..|||.
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 7999999999999999999999999999999999999998753 58999999999999999999999999999999999
Q ss_pred EeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccchhh
Q psy3476 116 IRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 195 (1417)
Q Consensus 116 ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 195 (1417)
++++++.+.+|+|+|+|+|+|++++..+
T Consensus 81 vr~~~~~s~~t~I~v~T~G~Llr~l~~d---------------------------------------------------- 108 (819)
T TIGR01970 81 VRGENKVSRRTRLEVVTEGILTRMIQDD---------------------------------------------------- 108 (819)
T ss_pred EccccccCCCCcEEEECCcHHHHHHhhC----------------------------------------------------
Confidence 9999999999999999999999877543
Q ss_pred hhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccccccc
Q psy3476 196 EEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADYF 275 (1417)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~~~ 275 (1417)
T Consensus 109 -------------------------------------------------------------------------------- 108 (819)
T TIGR01970 109 -------------------------------------------------------------------------------- 108 (819)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhc-cCCCCcE
Q psy3476 276 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH-STAEVKI 354 (1417)
Q Consensus 276 l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~-~r~~~qv 354 (1417)
+.|++|++|||||+|||++++|+++++++.+.. .+++.|+
T Consensus 109 ---------------------------------------~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlql 149 (819)
T TIGR01970 109 ---------------------------------------PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKI 149 (819)
T ss_pred ---------------------------------------cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceE
Confidence 457789999999999999999999888876654 5789999
Q ss_pred EEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCC
Q psy3476 355 ILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434 (1417)
Q Consensus 355 IlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~ 434 (1417)
|+||||++.+.+.+|| ++++++.++|+.+|++++|.+....++. ...+...+.+.+. ...|++||||||
T Consensus 150 IlmSATl~~~~l~~~l-~~~~vI~~~gr~~pVe~~y~~~~~~~~~---------~~~v~~~l~~~l~-~~~g~iLVFlpg 218 (819)
T TIGR01970 150 LAMSATLDGERLSSLL-PDAPVVESEGRSFPVEIRYLPLRGDQRL---------EDAVSRAVEHALA-SETGSILVFLPG 218 (819)
T ss_pred EEEeCCCCHHHHHHHc-CCCcEEEecCcceeeeeEEeecchhhhH---------HHHHHHHHHHHHH-hcCCcEEEEECC
Confidence 9999999999999999 5788999999999999998764322110 0111222222222 236899999999
Q ss_pred HHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecc
Q psy3476 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYD 514 (1417)
Q Consensus 435 ~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD 514 (1417)
+++|+.+++.|.+... .++.+.++||+|++++|.++++.|++|++||||||||||+|||||+|++|||+|+.|...||
T Consensus 219 ~~eI~~l~~~L~~~~~--~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd 296 (819)
T TIGR01970 219 QAEIRRVQEQLAERLD--SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFD 296 (819)
T ss_pred HHHHHHHHHHHHhhcC--CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccc
Confidence 9999999999976321 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHHHhhccCCCcccccChHHHHHHHHhhCCCCCcCCCCCC
Q psy3476 515 VTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLE 594 (1417)
Q Consensus 515 ~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~~l~~~~~pEI~r~~L~~~lL~lk~lgi~~~~~f~~l~ 594 (1417)
+.++++.+.+.|||+++|.||+|||||.++|+||+||+++++..+.++..|||.+.+|.+++|+++++|+.++..|+|++
T Consensus 297 ~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~ 376 (819)
T TIGR01970 297 PKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLD 376 (819)
T ss_pred cccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCcc
Q psy3476 595 APPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665 (1417)
Q Consensus 595 pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F 665 (1417)
||+.+++..|++.|..+||||.+++||++|+.|+.||++|++||||+.|+.++|.+++++|||+|+.++++
T Consensus 377 ~P~~~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~ 447 (819)
T TIGR01970 377 APPSVALAAARQLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLP 447 (819)
T ss_pred CcCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998864
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9.1e-74 Score=731.38 Aligned_cols=441 Identities=34% Similarity=0.513 Sum_probs=397.2
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC--CcEEEecchHHHHHHHHHHHHHHHccccCCeEEE
Q psy3476 37 SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF--QRIACTQPRRIACISLSKRVAYETLSQYSNLVGY 114 (1417)
Q Consensus 37 ~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~--~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy 114 (1417)
.|||+.+.++|++++.+++++||+|+|||||||++|+++++.+. .+|+|+||||++|+++|++++.++++.+|..|||
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 59999999999999999999999999999999999999998754 5899999999999999999999999999999999
Q ss_pred EEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccchh
Q psy3476 115 QIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYE 194 (1417)
Q Consensus 115 ~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 194 (1417)
.++++++.+.+|+|+|+|+|+|++.+..+
T Consensus 83 ~vr~~~~~~~~t~I~v~T~G~Llr~l~~d--------------------------------------------------- 111 (812)
T PRK11664 83 RMRAESKVGPNTRLEVVTEGILTRMIQRD--------------------------------------------------- 111 (812)
T ss_pred EecCccccCCCCcEEEEChhHHHHHHhhC---------------------------------------------------
Confidence 99999999999999999999999876543
Q ss_pred hhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccccccc
Q psy3476 195 IEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADY 274 (1417)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~~ 274 (1417)
T Consensus 112 -------------------------------------------------------------------------------- 111 (812)
T PRK11664 112 -------------------------------------------------------------------------------- 111 (812)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhc-cCCCCc
Q psy3476 275 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH-STAEVK 353 (1417)
Q Consensus 275 ~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~-~r~~~q 353 (1417)
+.|+++++|||||+|||++++|+.+++++.+.. .++++|
T Consensus 112 ----------------------------------------~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lq 151 (812)
T PRK11664 112 ----------------------------------------PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLK 151 (812)
T ss_pred ----------------------------------------CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccce
Confidence 457889999999999999999999888776654 578999
Q ss_pred EEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeC
Q psy3476 354 IILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMS 433 (1417)
Q Consensus 354 vIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~ 433 (1417)
+|+||||++.+.+.+|| .+++++.++|+.+|++.+|.+....++. ...+...+.+.+. ...|++|||||
T Consensus 152 lilmSATl~~~~l~~~~-~~~~~I~~~gr~~pV~~~y~~~~~~~~~---------~~~v~~~l~~~l~-~~~g~iLVFlp 220 (812)
T PRK11664 152 LLIMSATLDNDRLQQLL-PDAPVIVSEGRSFPVERRYQPLPAHQRF---------DEAVARATAELLR-QESGSLLLFLP 220 (812)
T ss_pred EEEEecCCCHHHHHHhc-CCCCEEEecCccccceEEeccCchhhhH---------HHHHHHHHHHHHH-hCCCCEEEEcC
Confidence 99999999999999999 5788999999999999998765432210 1112222333332 34689999999
Q ss_pred CHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceec
Q psy3476 434 GISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSY 513 (1417)
Q Consensus 434 ~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~y 513 (1417)
|+++|+.+++.|.+... .++.+.++||+|++++|+++++.|++|++||||||||||+|||||+|++|||+|+.|...|
T Consensus 221 g~~ei~~l~~~L~~~~~--~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~y 298 (812)
T PRK11664 221 GVGEIQRVQEQLASRVA--SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARF 298 (812)
T ss_pred CHHHHHHHHHHHHHhcc--CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccc
Confidence 99999999999986321 4688999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHHHhhccCCCcccccChHHHHHHHHhhCCCCCcCCCCC
Q psy3476 514 DVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFL 593 (1417)
Q Consensus 514 D~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~~l~~~~~pEI~r~~L~~~lL~lk~lgi~~~~~f~~l 593 (1417)
|+..+++.+.+.|||+++|.||+|||||.++|.||+||+++++..+.++..|||++.+|++++|.++++|+.++..|+|+
T Consensus 299 d~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~l 378 (812)
T PRK11664 299 DPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWL 378 (812)
T ss_pred cccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChh--hHHHHhhhccC
Q psy3476 594 EAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQID--TVLSLAAVLSV 661 (1417)
Q Consensus 594 ~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle--~vl~IaA~Lsv 661 (1417)
+||+..++.+|++.|+.+||||.+++||++|+.|+.||++|++||||+.|..++|.. .+..++|+|+.
T Consensus 379 d~P~~~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e 448 (812)
T PRK11664 379 DQPPAAALAAAKRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEE 448 (812)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999998642 45566666654
No 12
>KOG0921|consensus
Probab=100.00 E-value=3.6e-64 Score=600.01 Aligned_cols=565 Identities=30% Similarity=0.486 Sum_probs=460.1
Q ss_pred hchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC-------CcEEEecchHHHHHHHHH
Q psy3476 26 STLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF-------QRIACTQPRRIACISLSK 98 (1417)
Q Consensus 26 ~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~-------~~i~~tqPrr~aa~~~a~ 98 (1417)
..+.++.++|..|||..+..+|++++..+++++|-++||||||||+.|+|+|+-. ..+.++||||+.|+.+|+
T Consensus 365 ~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiae 444 (1282)
T KOG0921|consen 365 EALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAE 444 (1282)
T ss_pred cchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHH
Confidence 3678899999999999999999999999999999999999999999999999643 469999999999999999
Q ss_pred HHHHHHccccCCeEEEEEeeccccc-CCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhh
Q psy3476 99 RVAYETLSQYSNLVGYQIRFEKHRR-EKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKA 177 (1417)
Q Consensus 99 rva~e~~~~~g~~vGy~ir~e~~~~-~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1417)
||+.|+++.+|++|||++|+++.++ +...|.|||.|++++++.+.
T Consensus 445 rva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g---------------------------------- 490 (1282)
T KOG0921|consen 445 RVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG---------------------------------- 490 (1282)
T ss_pred HHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc----------------------------------
Confidence 9999999999999999999999875 56789999999999988654
Q ss_pred hhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceee
Q psy3476 178 EEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLG 257 (1417)
Q Consensus 178 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~ 257 (1417)
+-..+|+|+||.|+|++++|||..
T Consensus 491 --------------------------------------------------------lrg~sh~i~deiherdv~~dfll~ 514 (1282)
T KOG0921|consen 491 --------------------------------------------------------LRGISHVIIDEIHERDVDTDFVLI 514 (1282)
T ss_pred --------------------------------------------------------ccccccccchhhhhhccchHHHHH
Confidence 235678888888888888887653
Q ss_pred ccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcch
Q psy3476 258 VISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337 (1417)
Q Consensus 258 ~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ 337 (1417)
++. .+......+.||.|++.+++|+
T Consensus 515 ~lr-------------------------------------------------------~m~~ty~dl~v~lmsatIdTd~ 539 (1282)
T KOG0921|consen 515 VLR-------------------------------------------------------EMISTYRDLRVVLMSATIDTDL 539 (1282)
T ss_pred HHH-------------------------------------------------------hhhccchhhhhhhhhcccchhh
Confidence 321 2233455677888888888888
Q ss_pred HHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEecccc----cccccccc-CCCC------
Q psy3476 338 LLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV----ELDRTKSE-KLDP------ 406 (1417)
Q Consensus 338 ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~----~~~~~~~~-~~~~------ 406 (1417)
+..++..+ .++.++++|+|.+.|..++ -.+++..+++++.+.+..+.... ..+..+.. ....
T Consensus 540 f~~~f~~~------p~~~~~grt~pvq~F~led-~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~ 612 (1282)
T KOG0921|consen 540 FTNFFSSI------PDVTVHGRTFPVQSFFLED-IIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNES 612 (1282)
T ss_pred hhhhhccc------cceeeccccccHHHHHHHH-hhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcch
Confidence 77766544 3457888888877776665 46777778887777765443221 11111100 0000
Q ss_pred -----------ChHHHHHHHHHh-hCCCCCCCcEEEEeCCHHHHHHHHHHHHhhh--hccCCcEEEEecCCCCHHHHHHH
Q psy3476 407 -----------GPYIRILSIIDK-KYPRTERGDVLIFMSGISEISSIVRAAQEYN--EKSQGWIVLPLHSTLSLEEQDRV 472 (1417)
Q Consensus 407 -----------~~~~~il~~l~~-~~~~~~~g~iLVFl~~~~eie~la~~L~~~~--~~~~~~~V~~LHs~Ls~~eR~~v 472 (1417)
.....+.+.+.. +....-.|.|+||+|+.+++..+...+..+. .+...+.++++|+.++.+++.+|
T Consensus 613 ~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkv 692 (1282)
T KOG0921|consen 613 TRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKV 692 (1282)
T ss_pred hhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhc
Confidence 001122332222 2223446899999999999999999886543 34567889999999999999999
Q ss_pred hccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecC
Q psy3476 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552 (1417)
Q Consensus 473 ~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t 552 (1417)
++..+.|..|+|++|+++++++||.++++|||+++++.+.|.....+..|.+.|.|+-+..||.||+||..+|.|+++.+
T Consensus 693 f~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs 772 (1282)
T KOG0921|consen 693 FEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCS 772 (1282)
T ss_pred cCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCcccccChHHHHHHHHhhCCCCCcCC--CCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCC
Q psy3476 553 EEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDL 630 (1417)
Q Consensus 553 ~~~~~~l~~~~~pEI~r~~L~~~lL~lk~lgi~~~~~f--~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~l 630 (1417)
...|+.+.+...||+.+.++..+.|..|.+....+..| -.+.||+.+++..+-..|...+++|.++.+|++|+.++++
T Consensus 773 ~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l 852 (1282)
T KOG0921|consen 773 RARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARL 852 (1282)
T ss_pred HHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhc
Confidence 99999999999999999999999999998877777766 4689999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCChhHHHHHhhccc-CCCChHHHHHHHHHHHHhhhhh-ch
Q psy3476 631 PVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELES-NHGDPLTVLNAYKEWLGVKKDR-VR 708 (1417)
Q Consensus 631 pldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~~-~~sD~ltlln~f~~w~~~~~~~-~~ 708 (1417)
|+.|.++||++.+..++|.+-+..+|+..+...+|..........+-.++.|.. .-+||.+...+-+.|......+ ..
T Consensus 853 ~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~ 932 (1282)
T KOG0921|consen 853 PIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVSVIQGYREAVQMGAAA 932 (1282)
T ss_pred cCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccccccccchhhhhhhhhhHHHhhhhhhh
Confidence 999999999999999999999999999999998887644333333333445543 3467766666655554433222 35
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCC
Q psy3476 709 SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742 (1417)
Q Consensus 709 ~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~gl 742 (1417)
.++||.+++++...+......++|+++.|+.+++
T Consensus 933 e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~f 966 (1282)
T KOG0921|consen 933 EREFCERYSLSNPVLKMTDGARRQLIDVLRQCSF 966 (1282)
T ss_pred hhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccC
Confidence 6799999999999999999999999999987665
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.5e-52 Score=519.84 Aligned_cols=300 Identities=20% Similarity=0.331 Sum_probs=237.1
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCcc-cceeEEec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRL-YPIQLEYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~-~pv~v~~~ 391 (1417)
..|+++++|||||||||...+|+++.+++.+... ..|+++||||++ .+.+.+|| ++++.+.++++. +|++.+|.
T Consensus 287 ~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~--~rq~ILmSATl~~dv~~l~~~~-~~p~~I~I~grt~~pV~~~yi 363 (675)
T PHA02653 287 NKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK--IRSLFLMTATLEDDRDRIKEFF-PNPAFVHIPGGTLFPISEVYV 363 (675)
T ss_pred cccccCCEEEccccccCccchhHHHHHHHHhhhh--cCEEEEEccCCcHhHHHHHHHh-cCCcEEEeCCCcCCCeEEEEe
Confidence 4578899999999999999999998888765432 248999999994 66888998 578889999985 99999887
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
+............. .....++..+.+.. ...++++||||||+++++.+++.|.+.. +++.+.++||+|++.+ +
T Consensus 364 ~~~~~~~~~~~y~~-~~k~~~l~~L~~~~-~~~~g~iLVFlpg~~ei~~l~~~L~~~~---~~~~v~~LHG~Lsq~e--q 436 (675)
T PHA02653 364 KNKYNPKNKRAYIE-EEKKNIVTALKKYT-PPKGSSGIVFVASVSQCEEYKKYLEKRL---PIYDFYIIHGKVPNID--E 436 (675)
T ss_pred ecCcccccchhhhH-HHHHHHHHHHHHhh-cccCCcEEEEECcHHHHHHHHHHHHhhc---CCceEEeccCCcCHHH--H
Confidence 54321111100000 11122333333221 1235799999999999999999997632 3688999999999864 4
Q ss_pred HhccC-CCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEe
Q psy3476 472 VFHYA-PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRL 550 (1417)
Q Consensus 472 v~~~f-~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L 550 (1417)
+++.| ++|+++||||||+||||||||+|++|||+|+++.+. +..+ .+.|+|+++|.||+|||||.++|.||+|
T Consensus 437 ~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g----~~~~iSkasa~QRaGRAGR~~~G~c~rL 510 (675)
T PHA02653 437 ILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGG----KEMFISKSMRTQRKGRVGRVSPGTYVYF 510 (675)
T ss_pred HHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccC----cccccCHHHHHHhccCcCCCCCCeEEEE
Confidence 44555 789999999999999999999999999999877652 2222 3569999999999999999999999999
Q ss_pred cCHHHHHHhhccCCCcccccC---hHHHHHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChh--hh
Q psy3476 551 YSEEQYSLLAEYSTPEIRRVS---IDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSL--GR 625 (1417)
Q Consensus 551 ~t~~~~~~l~~~~~pEI~r~~---L~~~lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~L--G~ 625 (1417)
|++++. .| |.+.+ |..++|+++++|+... .+.|++||+.+++..|++.|..+||+|+ ++|.+ |+
T Consensus 511 yt~~~~-------~p-I~ri~~~~L~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~ 579 (675)
T PHA02653 511 YDLDLL-------KP-IKRIDSEFLHNYILYAKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNY 579 (675)
T ss_pred ECHHHh-------HH-HHHHhHHHHHHHHHHHHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccc
Confidence 999875 23 55555 8999999999999544 4559999999999999999999998754 79999 99
Q ss_pred hccCCCCChhhHHHHHhhhc
Q psy3476 626 FLSDLPVDIPLGKMLVFGSM 645 (1417)
Q Consensus 626 ~ls~lpldp~lak~Ll~~~~ 645 (1417)
.++.+ +.||++++|+.
T Consensus 580 ~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 580 YVNML----EYAKIYVKGGI 595 (675)
T ss_pred cHHHH----HHhHHHhcccH
Confidence 99998 99999998864
No 14
>KOG0922|consensus
Probab=100.00 E-value=2.9e-55 Score=522.05 Aligned_cols=212 Identities=25% Similarity=0.458 Sum_probs=208.5
Q ss_pred hhhhHHHhhhccccccCCCcccccccHHHHhhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHHHH
Q psy3476 795 EEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 874 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A~~ 874 (1417)
+||++|.||+|||||++||+||||||+++|+.|++.++|||+|++|+.++|+||++|++|+..|+|+|||+.+++..|++
T Consensus 363 ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~ 442 (674)
T KOG0922|consen 363 ISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPPEALEEALE 442 (674)
T ss_pred chHHHHhhhcccCCCCCCceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCChHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccccch-hhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhcccc-cccCCCCccC
Q psy3476 875 SLTQHGAIDSKERVTT-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLG-RFLSDLPVDI 952 (1417)
Q Consensus 875 ~L~~lgald~~~~lT~-lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~~-~~~~~~~f~~ 952 (1417)
.|+.+||||++|.||. +|++|+.+|++|.++|||+.+..+||++++++|||+||.++++.++.+.+.. ++.++..|..
T Consensus 443 ~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~ 522 (674)
T KOG0922|consen 443 ELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFAN 522 (674)
T ss_pred HHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhcC
Confidence 9999999999999998 9999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred CCCCccccccccccc-----hhhHHHHhhhhccccchhhhhhh-ccccccCCCccccccc
Q psy3476 953 PLGKMLVFGSMFHQI-----DTMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPLGK 1006 (1417)
Q Consensus 953 ~~gd~lt~l~~~~~~-----~~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~ 1006 (1417)
++|||+|++|+|++| +++||.+||+|+++|++|.+++. |.++++++++++.|++
T Consensus 523 ~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~ 582 (674)
T KOG0922|consen 523 PEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCG 582 (674)
T ss_pred cccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCC
Confidence 999999999999999 59999999999999999999999 9999999999998887
No 15
>KOG0924|consensus
Probab=100.00 E-value=6.3e-54 Score=501.24 Aligned_cols=212 Identities=27% Similarity=0.465 Sum_probs=207.0
Q ss_pred hhhhHHHhhhccccccCCCcccccccHHHH-hhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHHH
Q psy3476 795 EEEEEEEEGERLESRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 873 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~pG~CyRLyt~~~~-~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A~ 873 (1417)
||+.+|.||+||||||+||+||||||+.+| +.|.+.++|||||++|+++||.||++|++++.+|+|+||||.+.+.+|+
T Consensus 670 IS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sl 749 (1042)
T KOG0924|consen 670 ISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSL 749 (1042)
T ss_pred chhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHH
Confidence 899999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhcccccccCCCCccCC
Q psy3476 874 RSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIP 953 (1417)
Q Consensus 874 ~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~~~~~~~~~f~~~ 953 (1417)
..|+.|||||+.|.||++|++|+.||+||.|+||||.|+.+||.+||++|++|||...+|.++++....++.++..|.++
T Consensus 750 y~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~ 829 (1042)
T KOG0924|consen 750 YQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVP 829 (1042)
T ss_pred HHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccc-----hhhHHHHhhhhccccchhhhhhh-ccccccCCCccccccc
Q psy3476 954 LGKMLVFGSMFHQI-----DTMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPLGK 1006 (1417)
Q Consensus 954 ~gd~lt~l~~~~~~-----~~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~ 1006 (1417)
+||||||||||++| +..||++||||++||++|..++. |+.|++++++++.|+.
T Consensus 830 ~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~~ 888 (1042)
T KOG0924|consen 830 ESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISSD 888 (1042)
T ss_pred CCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccCc
Confidence 99999999999999 59999999999999999999999 9999999888887765
No 16
>KOG0925|consensus
Probab=100.00 E-value=5.4e-51 Score=463.97 Aligned_cols=215 Identities=26% Similarity=0.414 Sum_probs=209.2
Q ss_pred hhhhHHHhhhccccccCCCcccccccHHHHh-hhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHHH
Q psy3476 795 EEEEEEEEGERLESRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 873 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~-~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A~ 873 (1417)
|||.+|+||+|||||+.||+||||||++.|+ .|.+.+.|||+|++|+++||+||.+||.++.+|+|+|||.++++.+|+
T Consensus 360 ISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrAL 439 (699)
T KOG0925|consen 360 ISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRAL 439 (699)
T ss_pred chHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHH
Confidence 9999999999999999999999999999996 799999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhh-hcccccccCCCCccC
Q psy3476 874 RSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKER-VTSLGRFLSDLPVDI 952 (1417)
Q Consensus 874 ~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~-~~~~~~~~~~~~f~~ 952 (1417)
+.|..|+|||++|+||++|..|+.||+||.++||||.+++|+|.+|+++|+||||..+.+.++. +.+..++.++..|.|
T Consensus 440 E~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH 519 (699)
T KOG0925|consen 440 EVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAH 519 (699)
T ss_pred HHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 666688899999999
Q ss_pred CCCCccccccccccc-----hhhHHHHhhhhccccchhhhhhh-ccccccCCCccccccccccccc
Q psy3476 953 PLGKMLVFGSMFHQI-----DTMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGS 1012 (1417)
Q Consensus 953 ~~gd~lt~l~~~~~~-----~~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~ 1012 (1417)
++|||+||+|||++| +++||.+||||++||++|.-+|. |+|+|+|+.+++.+.. |||
T Consensus 520 ~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~---F~S 582 (699)
T KOG0925|consen 520 IDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTD---FGS 582 (699)
T ss_pred CCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCC---CCC
Confidence 999999999999999 59999999999999999999999 9999999999999999 663
No 17
>KOG0923|consensus
Probab=100.00 E-value=1.4e-49 Score=465.58 Aligned_cols=212 Identities=24% Similarity=0.467 Sum_probs=204.3
Q ss_pred hhhhHHHhhhccccccCCCcccccccHHHHh-hhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHHH
Q psy3476 795 EEEEEEEEGERLESRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 873 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~-~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A~ 873 (1417)
+|++.|.||+||||||+||+||||||...|. .+.+.++|||+|++|+++||.||++||+|+.+|||+||||.+++..|+
T Consensus 579 iSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aL 658 (902)
T KOG0923|consen 579 ISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKAL 658 (902)
T ss_pred echhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHH
Confidence 8999999999999999999999999999996 688888999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhcccc-ccchhhhcccccccCCCCccC
Q psy3476 874 RSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGA-IDSKERVTSLGRFLSDLPVDI 952 (1417)
Q Consensus 874 ~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~-~~~~~~~~~~~~~~~~~~f~~ 952 (1417)
+.|+.|||||..|.||-+||+|+.||+||+++|||+.+.+++|.++|++||||||.+. ++.++.+++--+|-+...|.+
T Consensus 659 E~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~ 738 (902)
T KOG0923|consen 659 EQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEE 738 (902)
T ss_pred HHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCC
Confidence 9999999999999999999999999999999999999999999999999999999766 799999999999999999999
Q ss_pred CCCCccccccccccc-----hhhHHHHhhhhccccchhhhhhh-ccccccCCCccccccc
Q psy3476 953 PLGKMLVFGSMFHQI-----DTMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPLGK 1006 (1417)
Q Consensus 953 ~~gd~lt~l~~~~~~-----~~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~ 1006 (1417)
+.|||+++++||++| +.+||.+||+++++|.+|..+++ |..++.+.++...|+.
T Consensus 739 ~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~ 798 (902)
T KOG0923|consen 739 PVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQ 798 (902)
T ss_pred CCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCCh
Confidence 999999999999998 69999999999999999999999 9988888888888877
No 18
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.3e-46 Score=485.08 Aligned_cols=212 Identities=25% Similarity=0.425 Sum_probs=200.3
Q ss_pred hhhhhhHHHhhhccccccCCCcccccccHHHHhhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHH
Q psy3476 793 EIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 872 (1417)
Q Consensus 793 ~~~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A 872 (1417)
+-+|++.+.||+|||||++||+||||||+++|+.+++++.|||+|++|+++||+++++|++++..|+|+|||+..++..|
T Consensus 382 ~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~a 461 (1294)
T PRK11131 382 EPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDG 461 (1294)
T ss_pred eecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccc-----cccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhcccccccCC
Q psy3476 873 VRSLTQHGAIDSK-----ERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSD 947 (1417)
Q Consensus 873 ~~~L~~lgald~~-----~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~~~~~~~ 947 (1417)
++.|+.+||||++ ++||++|+.|++||+||++||||+.|+.|||++++++|||+||+++++.++.+++..++.+|
T Consensus 462 l~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~ 541 (1294)
T PRK11131 462 VRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKH 541 (1294)
T ss_pred HHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHH
Confidence 9999999999864 57999999999999999999999999999999999999999999999999989888999999
Q ss_pred CCccCCCCCccccccccccch-----------hhHHHHhhhhccccchhhhhhh-ccccccCCCccccc
Q psy3476 948 LPVDIPLGKMLVFGSMFHQID-----------TMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPL 1004 (1417)
Q Consensus 948 ~~f~~~~gd~lt~l~~~~~~~-----------~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~ 1004 (1417)
..|.+++|||+|++|+|+.|. ..||.+||||+.+|+++..++. |.++++++++++.+
T Consensus 542 ~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~ 610 (1294)
T PRK11131 542 RRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNS 610 (1294)
T ss_pred HhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999882 3699999999999999999999 88888877665543
No 19
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.6e-44 Score=463.48 Aligned_cols=208 Identities=26% Similarity=0.455 Sum_probs=196.2
Q ss_pred hhhhhhHHHhhhccccccCCCcccccccHHHHhhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHH
Q psy3476 793 EIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 872 (1417)
Q Consensus 793 ~~~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A 872 (1417)
.-+|++.|.||+|||||++||+||||||+++|+.+++++.|||+|+||++++|++++||++++.+|+|+|||+..++..|
T Consensus 375 ~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A 454 (1283)
T TIGR01967 375 EPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDG 454 (1283)
T ss_pred ccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccc---ccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhcccccccCCCC
Q psy3476 873 VRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLP 949 (1417)
Q Consensus 873 ~~~L~~lgald~~~---~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~~~~~~~~~ 949 (1417)
++.|..+||||++| +||++|+.|+.||+||++||||+.|..+||++++++|||+||.++++.++.+++..++.++..
T Consensus 455 ~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~ 534 (1283)
T TIGR01967 455 FRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQAHAR 534 (1283)
T ss_pred HHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHH
Confidence 99999999999998 799999999999999999999999999999999999999999999988888888899999999
Q ss_pred ccCCCCCccccccccccch-----------hhHHHHhhhhccccchhhhhhh-ccccccCCCc
Q psy3476 950 VDIPLGKMLVFGSMFHQID-----------TMLLLDLALNFGAIDSKERVTS-LGRFLSDLPV 1000 (1417)
Q Consensus 950 f~~~~gd~lt~l~~~~~~~-----------~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~ 1000 (1417)
|.+++|||++++|+|+.|. ..||.+||||+.+|+++.+++. |.++++++++
T Consensus 535 f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~ 597 (1283)
T TIGR01967 535 FKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGL 597 (1283)
T ss_pred hcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999871 5899999999999999888888 7766655543
No 20
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-38 Score=407.18 Aligned_cols=554 Identities=19% Similarity=0.155 Sum_probs=353.7
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC--CCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEE
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG--FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQ 115 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~--~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ 115 (1417)
..++.+|.++++.+.++++++++||||||||+++.+++++.. ..++++..|+|..|.+.++.+.+ + ..+|..|++.
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~-l-~~~g~~v~~~ 98 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSR-L-RSLGMRVKIS 98 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHH-H-hhcCCeEEEE
Confidence 346899999999999999999999999999999888877642 24677777999888888887764 2 2356666654
Q ss_pred Eeecccc---cCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccc
Q psy3476 116 IRFEKHR---REKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNA 192 (1417)
Q Consensus 116 ir~e~~~---~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 192 (1417)
+...... -....|+++|++.+...+..+
T Consensus 99 ~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~------------------------------------------------- 129 (674)
T PRK01172 99 IGDYDDPPDFIKRYDVVILTSEKADSLIHHD------------------------------------------------- 129 (674)
T ss_pred eCCCCCChhhhccCCEEEECHHHHHHHHhCC-------------------------------------------------
Confidence 4311110 123456666665433222111
Q ss_pred hhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccccc
Q psy3476 193 YEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAA 272 (1417)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~ 272 (1417)
T Consensus 130 -------------------------------------------------------------------------------- 129 (674)
T PRK01172 130 -------------------------------------------------------------------------------- 129 (674)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccc--cCcchHHHHHHHHhccCC
Q psy3476 273 DYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERH--LHGDFLLGVIKCLLHSTA 350 (1417)
Q Consensus 273 ~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~--l~~d~ll~llk~l~~~r~ 350 (1417)
...+.++++||+||+|... ..+..+..++..+...++
T Consensus 130 -----------------------------------------~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~ 168 (674)
T PRK01172 130 -----------------------------------------PYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNP 168 (674)
T ss_pred -----------------------------------------hhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCc
Confidence 0246789999999999432 122345556666666678
Q ss_pred CCcEEEEccCC-CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 351 EVKIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 351 ~~qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
+.|+|+||||+ |.+++++|+ +++.+....|+.|++................. ...+...+.+.. ..++++|
T Consensus 169 ~~riI~lSATl~n~~~la~wl--~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~----~~~~~~~i~~~~--~~~~~vL 240 (674)
T PRK01172 169 DARILALSATVSNANELAQWL--NASLIKSNFRPVPLKLGILYRKRLILDGYERS----QVDINSLIKETV--NDGGQVL 240 (674)
T ss_pred CCcEEEEeCccCCHHHHHHHh--CCCccCCCCCCCCeEEEEEecCeeeecccccc----cccHHHHHHHHH--hCCCcEE
Confidence 89999999999 899999999 35667777888887753321110000000000 011223333322 3468999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccC--------------------CcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQ--------------------GWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~--------------------~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
|||+++++++.++..|.+...... ...+..+||+|++++|..+++.|++|.++|||||++
T Consensus 241 VF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~ 320 (674)
T PRK01172 241 VFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPT 320 (674)
T ss_pred EEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecch
Confidence 999999999999999876432111 124788999999999999999999999999999999
Q ss_pred hhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEec-CHHHHHHhhcc--C
Q psy3476 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLY-SEEQYSLLAEY--S 563 (1417)
Q Consensus 490 ae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~-t~~~~~~l~~~--~ 563 (1417)
+++|||+|+..+||+. ...|+. ....++|.+++.||+|||||.| .|.++.+. ++++++.+.++ .
T Consensus 321 la~Gvnipa~~VII~~----~~~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~ 390 (674)
T PRK01172 321 LAAGVNLPARLVIVRD----ITRYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSG 390 (674)
T ss_pred hhccCCCcceEEEEcC----ceEeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcC
Confidence 9999999999888861 122332 2235789999999999999998 57777664 33334333332 2
Q ss_pred CCccccc------ChHHHHHHHHhhCC----CCCcCC-----CCCCCCC---cchhHHHHHHHHhcCCCCCCC--CcChh
Q psy3476 564 TPEIRRV------SIDSLLLSLVCMGL----GDVRKF-----PFLEAPP---AENIESSVRSLTQHGAIDSKE--RVTSL 623 (1417)
Q Consensus 564 ~pEI~r~------~L~~~lL~lk~lgi----~~~~~f-----~~l~pP~---~~~l~~Al~~L~~lGaId~~~--~lT~L 623 (1417)
.|+.... .+...+|..++.|. .++..| .+..+++ .+.++++++.|.+.|+|+.++ .+|++
T Consensus 391 ~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~l 470 (674)
T PRK01172 391 EPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRL 470 (674)
T ss_pred CCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHH
Confidence 2332222 22333556666664 222222 2334332 457899999999999998654 58999
Q ss_pred hhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCChhHHHHHhh---cccCC--CChHHHHHHHHH
Q psy3476 624 GRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKE---LESNH--GDPLTVLNAYKE 698 (1417)
Q Consensus 624 G~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~---f~~~~--sD~ltlln~f~~ 698 (1417)
|++++.+|++|..++.+..+..-.. ....+..+++....|. |...+++ +..++. ..... ..++...-+.++
T Consensus 471 G~~~s~~~l~~~t~~~~~~~l~~~~--~~~~~l~~~~~~~e~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~ll~~ 546 (674)
T PRK01172 471 GKLTSDLYIDPESALILKSAFDHDY--DEDLALYYISLCREII-PANTRDD-YYAMEFLEDIGVIDGDISAAKTAMVLRG 546 (674)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhccC--CHHHHHHHhhcCcccc-ccccchH-HHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 9999999999999999987764332 2234566666677773 3222222 111111 11111 122333345677
Q ss_pred HHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCCChhHHHHHHhcCchHHHHHHHhhhccc
Q psy3476 699 WLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE 778 (1417)
Q Consensus 699 w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~gl~~~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~~ 778 (1417)
|.+.. ....-++.+++..+.++.+..--..+...+..+.=.-. ..-..-.+.+.+++..|-...+..|.+ .+ .
T Consensus 547 ~~~~~----~~~~i~~~~~~~~g~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~l~~~~~rl~~gv~~~~~~L~~-ip-~ 619 (674)
T PRK01172 547 WISEA----SMQKITDTYGIAPGDVQARASSADWISYSLARLSSIYK-PEMRRKLEILNIRIKEGIREDLIDLVL-IP-K 619 (674)
T ss_pred HHcCC----CHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHcCCCHHHHhhcC-CC-C
Confidence 86532 23345778899988888886555555432222100000 000112445667799999888888873 43 5
Q ss_pred cccccccccccccc
Q psy3476 779 APKRRKMLKADNAY 792 (1417)
Q Consensus 779 ~~r~rk~l~~~~~~ 792 (1417)
.+|.|.+.-.+.+.
T Consensus 620 ~~~~~a~~l~~~g~ 633 (674)
T PRK01172 620 VGRVRARRLYDAGF 633 (674)
T ss_pred CCHHHHHHHHHcCC
Confidence 66777776666644
No 21
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.1e-37 Score=394.84 Aligned_cols=450 Identities=18% Similarity=0.206 Sum_probs=286.4
Q ss_pred cCCCCccEEEEecCcccccCc---chHHHHHHHHhccCCCCcEEEEccCC-CHHHHHHHhccCceEEEeCCcccceeEEe
Q psy3476 315 NFLSSYDVLVLDEIHERHLHG---DFLLGVIKCLLHSTAEVKIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPIQLEY 390 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~---d~ll~llk~l~~~r~~~qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv~v~~ 390 (1417)
.+++++++||+||+| ...+. ..+..++.++....++.|+|+||||+ |.+.+++|++ +..+....|+.|+....
T Consensus 133 ~~l~~v~lvViDE~H-~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~--~~~~~~~~rpv~l~~~v 209 (737)
T PRK02362 133 PWLDDITCVVVDEVH-LIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLD--AELVDSEWRPIDLREGV 209 (737)
T ss_pred hhhhhcCEEEEECcc-ccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhC--CCcccCCCCCCCCeeeE
Confidence 457789999999999 33333 33455566666667889999999999 7899999993 44555566766665432
Q ss_pred ccccccccc-cccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc------------------
Q psy3476 391 HPIVELDRT-KSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK------------------ 451 (1417)
Q Consensus 391 ~~~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~------------------ 451 (1417)
......... ....+........+..+.+.+ ..++++||||+++++++.+++.|......
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~ 287 (737)
T PRK02362 210 FYGGAIHFDDSQREVEVPSKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIR 287 (737)
T ss_pred ecCCeeccccccccCCCccchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 111110000 001111101122333333332 24689999999999999999988653210
Q ss_pred -------------cCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCC
Q psy3476 452 -------------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAK 518 (1417)
Q Consensus 452 -------------~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~ 518 (1417)
.-...+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||++ ...||...+
T Consensus 288 ~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g 363 (737)
T PRK02362 288 EVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAG 363 (737)
T ss_pred hccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCC
Confidence 001368899999999999999999999999999999999999999999999973 345775432
Q ss_pred ccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHH-HHH-HhhccC--CCcccc------cChHHHHHHHHhhCCC
Q psy3476 519 MSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEE-QYS-LLAEYS--TPEIRR------VSIDSLLLSLVCMGLG 585 (1417)
Q Consensus 519 ~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~-~~~-~l~~~~--~pEI~r------~~L~~~lL~lk~lgi~ 585 (1417)
..|+|.++|.||+|||||.| .|.|+.+.... +.. .+..+. .|+... ..+...++..++.|..
T Consensus 364 -----~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~ 438 (737)
T PRK02362 364 -----MQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFA 438 (737)
T ss_pred -----ceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCcc
Confidence 24789999999999999998 39999988653 222 122221 233222 2466778888877632
Q ss_pred C----CcCC---CCCCCCC------cchhHHHHHHHHhcCCCCCCCC---cChhhhhccCCCCChhhHHHHHhhhccCCh
Q psy3476 586 D----VRKF---PFLEAPP------AENIESSVRSLTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQI 649 (1417)
Q Consensus 586 ~----~~~f---~~l~pP~------~~~l~~Al~~L~~lGaId~~~~---lT~LG~~ls~lpldp~lak~Ll~~~~f~cl 649 (1417)
. +..| .|...+. .+.++.+++.|.+.|+|+.++. +|++|++++.++++|..+..+..+.....-
T Consensus 439 ~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~ 518 (737)
T PRK02362 439 RTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKK 518 (737)
T ss_pred CCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhccc
Confidence 1 1111 2322222 2358999999999999987654 899999999999999999999877543221
Q ss_pred hhHHHHhhhccCCCccccCCCCChhHHHHHhhcc--------c-----CCCChH------HHHHHHHHHHHhhhhhchHH
Q psy3476 650 DTVLSLAAVLSVQSPFTNRAFRDPDCETARKELE--------S-----NHGDPL------TVLNAYKEWLGVKKDRVRSK 710 (1417)
Q Consensus 650 e~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~--------~-----~~sD~l------tlln~f~~w~~~~~~~~~~~ 710 (1417)
.....+.-+++....|.....+..+.+..++... . ...++- -..-+.++|.+. ....
T Consensus 519 ~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~----~~~~ 594 (737)
T PRK02362 519 PTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDE----VDEE 594 (737)
T ss_pred CchHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhC----CCHH
Confidence 1234555566667777665554444333322110 0 111111 112235566542 2334
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHH----HHHHHHCCCCcCCCCCCCChhHHHHHHhcCchHHHHHHHhhhccccccccccc
Q psy3476 711 KWCKRRGIEEQRFYEVTKLRSQF----KQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKML 786 (1417)
Q Consensus 711 ~WC~~~~L~~~~L~ei~~lr~QL----~~iL~~~gl~~~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~~~~r~rk~l 786 (1417)
.-++++++..+.++.+.+.-..| .+++...++ ........+.+.+.+|-...+..|. +.. ..|++|.+.
T Consensus 595 ~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~~~~-----~~~~~~~~l~~~l~~gv~~~~~~L~-~ip-~i~~~~a~~ 667 (737)
T PRK02362 595 RITERYGVGPGDIRGKVETAEWLLHAAERLASELDL-----DLARAARELEKRVEYGVREELLDLV-GLR-GVGRVRARR 667 (737)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhCc-----cHHHHHHHHHHHHHhCCCHHHHHHh-CCC-CCCHHHHHH
Confidence 56778889877776665544444 444444332 0112244567788888888888886 333 455555544
Q ss_pred ccc
Q psy3476 787 KAD 789 (1417)
Q Consensus 787 ~~~ 789 (1417)
-.+
T Consensus 668 l~~ 670 (737)
T PRK02362 668 LYN 670 (737)
T ss_pred HHH
Confidence 433
No 22
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.5e-35 Score=377.25 Aligned_cols=448 Identities=18% Similarity=0.142 Sum_probs=275.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCC-CHHHHHHHhccCceEEEeCCcccceeE--Eec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPIQL--EYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv~v--~~~ 391 (1417)
.+++++++||+||+| ...+.+....+...+.+...+.|+|+||||+ |.+.+++|++ +..+....|+.|+.. .+.
T Consensus 134 ~~l~~l~lvViDE~H-~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~~~la~wl~--~~~~~~~~rpv~l~~~~~~~ 210 (720)
T PRK00254 134 SWIKDVKLVVADEIH-LIGSYDRGATLEMILTHMLGRAQILGLSATVGNAEELAEWLN--AELVVSDWRPVKLRKGVFYQ 210 (720)
T ss_pred hhhhcCCEEEEcCcC-ccCCccchHHHHHHHHhcCcCCcEEEEEccCCCHHHHHHHhC--CccccCCCCCCcceeeEecC
Confidence 356789999999999 3333344444444455556788999999999 8999999994 444555666666532 221
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh---------------------
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE--------------------- 450 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~--------------------- 450 (1417)
............. .......+.+.+ ..++++||||++++.++.++..+.....
T Consensus 211 ~~~~~~~~~~~~~----~~~~~~~~~~~i--~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (720)
T PRK00254 211 GFLFWEDGKIERF----PNSWESLVYDAV--KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEEN 284 (720)
T ss_pred CeeeccCcchhcc----hHHHHHHHHHHH--HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Confidence 1110000000000 011222222322 2367899999999999988877643210
Q ss_pred -------ccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccc
Q psy3476 451 -------KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQ 523 (1417)
Q Consensus 451 -------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~ 523 (1417)
..-...+.++||+|++++|..+++.|++|.++|||||+++++|||+|++++||... ..|+. +.
T Consensus 285 ~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~~------~~ 354 (720)
T PRK00254 285 PTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT----KRYSN------FG 354 (720)
T ss_pred CCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcCC------CC
Confidence 00123589999999999999999999999999999999999999999999999733 23431 12
Q ss_pred eeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHH-HHhhcc--CCCccc------ccChHHHHHHHHhhCC-CCCc--
Q psy3476 524 EFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQY-SLLAEY--STPEIR------RVSIDSLLLSLVCMGL-GDVR-- 588 (1417)
Q Consensus 524 ~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~-~~l~~~--~~pEI~------r~~L~~~lL~lk~lgi-~~~~-- 588 (1417)
..+++.+++.||+|||||.| .|.++.+.+.++. +.+..+ ..||.. ...+...++..++.+. .+..
T Consensus 355 ~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~ 434 (720)
T PRK00254 355 WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKEL 434 (720)
T ss_pred ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHH
Confidence 23566789999999999987 5999988764431 112222 122211 1245566777766653 2221
Q ss_pred ------CCCCCCCCCc----chhHHHHHHHHhcCCCCCCC----CcChhhhhccCCCCChhhHHHHHhhhcc-CChhhHH
Q psy3476 589 ------KFPFLEAPPA----ENIESSVRSLTQHGAIDSKE----RVTSLGRFLSDLPVDIPLGKMLVFGSMF-HQIDTVL 653 (1417)
Q Consensus 589 ------~f~~l~pP~~----~~l~~Al~~L~~lGaId~~~----~lT~LG~~ls~lpldp~lak~Ll~~~~f-~cle~vl 653 (1417)
+|.+...|+. +.+++++..|.+.|+|+.++ .+|++|++++.++++|..++++..+..- .--....
T Consensus 435 ~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~ 514 (720)
T PRK00254 435 VNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPL 514 (720)
T ss_pred HHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHH
Confidence 3333333442 46788899999999997542 4799999999999999999998776532 1012345
Q ss_pred HHhhhccCCCccccCCCCChhHHHHHhhccc-------C-----CCChHH------HHHHHHHHHHhhhhhchHHHHHHH
Q psy3476 654 SLAAVLSVQSPFTNRAFRDPDCETARKELES-------N-----HGDPLT------VLNAYKEWLGVKKDRVRSKKWCKR 715 (1417)
Q Consensus 654 ~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~~-------~-----~sD~lt------lln~f~~w~~~~~~~~~~~~WC~~ 715 (1417)
.|..+++..+.|.....++.+....+..... . ..|.-+ ..-+.++|.+.. ....-+++
T Consensus 515 ~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~----~~~~~~~~ 590 (720)
T PRK00254 515 GIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEV----PEGEIVET 590 (720)
T ss_pred HHHHHhhCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHH
Confidence 6777778888887655555443333311110 0 012212 122345665321 22334667
Q ss_pred cCCCHHHHHHHHHHHHHHHHHH----HHCCCCcCCCCCCCChhHHHHHHhcCchHHHHHHHhhhccccccccccccccc
Q psy3476 716 RGIEEQRFYEVTKLRSQFKQVL----GDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 790 (1417)
Q Consensus 716 ~~L~~~~L~ei~~lr~QL~~iL----~~~gl~~~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~~~~r~rk~l~~~~ 790 (1417)
+++..+.++.+.+.-..|...+ ...|... +--..+..+..++..|-...+..|.+ .. ..|++|+...++.
T Consensus 591 ~~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~---~~~~~l~~l~~rl~~g~~~~~~~L~~-ip-gig~~~~~~l~~~ 664 (720)
T PRK00254 591 YNIDPGDLYRILELADWLMYSLIELYKLFEPKQ---EVLDYLETLHLRVKHGVREELLELMR-LP-MIGRKRARALYNA 664 (720)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHhCcch---hHHHHHHHHHHHHHcCCCHHHhhhhc-CC-CCCHHHHHHHHHc
Confidence 7888888877766655555544 4333210 00011334566778888777777762 33 4555555554444
No 23
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.2e-37 Score=390.07 Aligned_cols=209 Identities=27% Similarity=0.398 Sum_probs=183.5
Q ss_pred hhhhhHHHhhhccccccCCCcccccccHHHHhhhhcCCccchhhcchHHHHHHHHHhcCC-CcccCCCCCCCCccchHHH
Q psy3476 794 IEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAENIESS 872 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~-~~~~f~~l~~P~~~~l~~A 872 (1417)
-+||+.|.||+|||||++||+||||||+++|+.|++++.|||+|+||++++|+|++||++ |+..|+|+|||+..++..|
T Consensus 359 ~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A 438 (845)
T COG1643 359 PISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAA 438 (845)
T ss_pred EechhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHHHHHH
Confidence 499999999999999999999999999999999999999999999999999999999996 9999999999999999999
Q ss_pred HHHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhcccc---ccchhhhccc---ccccC
Q psy3476 873 VRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGA---IDSKERVTSL---GRFLS 946 (1417)
Q Consensus 873 ~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~---~~~~~~~~~~---~~~~~ 946 (1417)
++.|+.+||||++|.||++|+.|+.||+||++|+||+.|..+||++++++|||+||.++ .+........ .++..
T Consensus 439 ~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~ 518 (845)
T COG1643 439 LTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLL 518 (845)
T ss_pred HHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 1222222211 22222
Q ss_pred -CCCccC---CCCCccccccccccc-----------hhhHHHHhhhhccccchhhhhhh-ccccccC-CCccc
Q psy3476 947 -DLPVDI---PLGKMLVFGSMFHQI-----------DTMLLLDLALNFGAIDSKERVTS-LGRFLSD-LPVDI 1002 (1417)
Q Consensus 947 -~~~f~~---~~gd~lt~l~~~~~~-----------~~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~-~~~~~ 1002 (1417)
...+.. +.|||++++++|..| ...||..++++..+|.++.|+.. ++..+.+ .+..+
T Consensus 519 ~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~ 591 (845)
T COG1643 519 KRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRIL 591 (845)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchh
Confidence 244444 899999999999977 47899999999999999999988 6655544 44433
No 24
>KOG0330|consensus
Probab=100.00 E-value=1.1e-34 Score=325.82 Aligned_cols=310 Identities=21% Similarity=0.247 Sum_probs=238.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC-----CcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEE
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF-----QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQI 116 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~-----~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~i 116 (1417)
..|.+.+.....++.+|..|+||||||..+..+|++.-+ ...+|..|+|..|.|+++.. +.++...|-.|-.-+
T Consensus 86 ~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~f-e~Lg~~iglr~~~lv 164 (476)
T KOG0330|consen 86 KIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQF-EALGSGIGLRVAVLV 164 (476)
T ss_pred hhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHH-HHhccccCeEEEEEe
Confidence 668889999999999999999999999887777766433 36889999999999998754 444555555544444
Q ss_pred eeccc------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccc
Q psy3476 117 RFEKH------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKAD 190 (1417)
Q Consensus 117 r~e~~------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 190 (1417)
.+..+ .+.+..|+++|+|.|.+++.+.
T Consensus 165 GG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T----------------------------------------------- 197 (476)
T KOG0330|consen 165 GGMDMMLQANQLSKKPHILVATPGRLWDHLENT----------------------------------------------- 197 (476)
T ss_pred cCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc-----------------------------------------------
Confidence 44333 2457889999999999877532
Q ss_pred cchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccc
Q psy3476 191 NAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIV 270 (1417)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~ 270 (1417)
T Consensus 198 -------------------------------------------------------------------------------- 197 (476)
T KOG0330|consen 198 -------------------------------------------------------------------------------- 197 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCC
Q psy3476 271 AADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA 350 (1417)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~ 350 (1417)
....+.+++++|+|||| |.++.||...+-+++...+.
T Consensus 198 ------------------------------------------kgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~ 234 (476)
T KOG0330|consen 198 ------------------------------------------KGFSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPR 234 (476)
T ss_pred ------------------------------------------cCccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCc
Confidence 00236678899999999 99999999999999999999
Q ss_pred CCcEEEEccCCC--HHHHHHHhccCceEEEeCCcc--cc-eeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCC
Q psy3476 351 EVKIILMSATIN--IELFHTYFNRIAKIIKVPGRL--YP-IQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTER 425 (1417)
Q Consensus 351 ~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~--~p-v~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 425 (1417)
..|.+++|||++ +.++..---.++..+.++... .+ +..+|...+.... ...++.++.+ ..+
T Consensus 235 erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K----------~~yLV~ll~e----~~g 300 (476)
T KOG0330|consen 235 ERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDK----------DTYLVYLLNE----LAG 300 (476)
T ss_pred cceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecccccc----------chhHHHHHHh----hcC
Confidence 999999999994 445543222344444443321 11 1122222211111 1122333332 336
Q ss_pred CcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcC
Q psy3476 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDS 505 (1417)
Q Consensus 426 g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIds 505 (1417)
+++||||++...+..++-.|+. .++...+|||.|+++.|...++.|++|.+.|+||||+|+||+|||.|++|||
T Consensus 301 ~s~iVF~~t~~tt~~la~~L~~-----lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN- 374 (476)
T KOG0330|consen 301 NSVIVFCNTCNTTRFLALLLRN-----LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN- 374 (476)
T ss_pred CcEEEEEeccchHHHHHHHHHh-----cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe-
Confidence 8999999999999999999988 7899999999999999999999999999999999999999999999999999
Q ss_pred CcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 506 GKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 506 G~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
||.|....+|+ ||+||+||.| +|+++.|++..+.+.+
T Consensus 375 -------yDiP~~skDYI----------HRvGRtaRaGrsG~~ItlVtqyDve~~ 412 (476)
T KOG0330|consen 375 -------YDIPTHSKDYI----------HRVGRTARAGRSGKAITLVTQYDVELV 412 (476)
T ss_pred -------cCCCCcHHHHH----------HHcccccccCCCcceEEEEehhhhHHH
Confidence 99999888887 9999999999 8999999999776543
No 25
>KOG0926|consensus
Probab=100.00 E-value=3.5e-36 Score=357.97 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=179.8
Q ss_pred hhhhhhHHHhhhccccccCCCcccccccHHHHh-hhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHH
Q psy3476 793 EIEEEEEEEEGERLESRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 871 (1417)
Q Consensus 793 ~~~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~-~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~ 871 (1417)
+-+|+..|.||+|||||++||+||||||...|+ .+.+++.|||++.+.++++|+||+|+|.++.+|||.+||...++.+
T Consensus 675 ~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~ 754 (1172)
T KOG0926|consen 675 DWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEK 754 (1172)
T ss_pred EeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHH
Confidence 348999999999999999999999999999997 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchh--------------h
Q psy3476 872 SVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE--------------R 937 (1417)
Q Consensus 872 A~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~--------------~ 937 (1417)
|.+.|..|||||.+|.||.+|+.|+.||+.|+++|||+.+.+++|+.-...++++||.+.++-.. .
T Consensus 755 Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~e 834 (1172)
T KOG0926|consen 755 AERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPE 834 (1172)
T ss_pred HHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccchhhhhhhcccccccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999987742111 1
Q ss_pred hcccc------------------cccCCCCccCCCCCccccccccccc-----hhhHHHHhhhhccccchhhhhhh-ccc
Q psy3476 938 VTSLG------------------RFLSDLPVDIPLGKMLVFGSMFHQI-----DTMLLLDLALNFGAIDSKERVTS-LGR 993 (1417)
Q Consensus 938 ~~~~~------------------~~~~~~~f~~~~gd~lt~l~~~~~~-----~~~~c~~~~l~~~~~~~~~~~~~-l~~ 993 (1417)
++..- .....-.|...++|.|+++.+-.++ ...+|..|+|-.++|.++..++. |.+
T Consensus 835 E~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~Ll~Av~a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~ 914 (1172)
T KOG0926|consen 835 EKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVLLSAVSAAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTN 914 (1172)
T ss_pred hhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHH
Confidence 10100 1113457888899999999987665 57799999999999999988888 765
Q ss_pred ccc
Q psy3476 994 FLS 996 (1417)
Q Consensus 994 ~~~ 996 (1417)
+++
T Consensus 915 lv~ 917 (1172)
T KOG0926|consen 915 LVN 917 (1172)
T ss_pred HHH
Confidence 544
No 26
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.4e-33 Score=343.41 Aligned_cols=205 Identities=23% Similarity=0.339 Sum_probs=158.8
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCcc--cceeEEec
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRL--YPIQLEYH 391 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~--~pv~v~~~ 391 (1417)
.++++++||+|||| ++++.+|...+...+...++..|+++||||++ ...+...+..++..+.+.... ..++.+|.
T Consensus 144 ~l~~l~~lViDEad-~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~ 222 (460)
T PRK11776 144 DLDALNTLVLDEAD-RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFY 222 (460)
T ss_pred cHHHCCEEEEECHH-HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEE
Confidence 36678999999999 77788888888888878888899999999995 345565554555555444321 11222222
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
..... .....+...+....++++||||+++++++.+++.|.+ .++.+..+||+|++.+|+.
T Consensus 223 ~~~~~--------------~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~-----~~~~v~~~hg~~~~~eR~~ 283 (460)
T PRK11776 223 EVSPD--------------ERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNA-----QGFSALALHGDLEQRDRDQ 283 (460)
T ss_pred EeCcH--------------HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHh-----CCCcEEEEeCCCCHHHHHH
Confidence 11110 1122222222223467899999999999999999987 5788999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEe
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRL 550 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L 550 (1417)
+++.|++|..+|||||+++++|||||++++||+ ||.|.....|+ ||+|||||.| .|.||.+
T Consensus 284 ~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~--------~d~p~~~~~yi----------qR~GRtGR~g~~G~ai~l 345 (460)
T PRK11776 284 VLVRFANRSCSVLVATDVAARGLDIKALEAVIN--------YELARDPEVHV----------HRIGRTGRAGSKGLALSL 345 (460)
T ss_pred HHHHHHcCCCcEEEEecccccccchhcCCeEEE--------ecCCCCHhHhh----------hhcccccCCCCcceEEEE
Confidence 999999999999999999999999999999999 88887666665 9999999999 7999999
Q ss_pred cCHHHHHH
Q psy3476 551 YSEEQYSL 558 (1417)
Q Consensus 551 ~t~~~~~~ 558 (1417)
+++++...
T Consensus 346 ~~~~e~~~ 353 (460)
T PRK11776 346 VAPEEMQR 353 (460)
T ss_pred EchhHHHH
Confidence 99887654
No 27
>KOG0331|consensus
Probab=100.00 E-value=1.4e-33 Score=336.75 Aligned_cols=213 Identities=23% Similarity=0.353 Sum_probs=165.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhcc-CCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCcccceeEEec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHS-TAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRLYPIQLEYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~-r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~pv~v~~~ 391 (1417)
..|++++++|+|||| |+++.+|...+.+++.+. +++.|++++|||.+ +..+++-|..+...+.+-+...-..-+
T Consensus 235 ~~l~~v~ylVLDEAD-rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~-- 311 (519)
T KOG0331|consen 235 LNLSRVTYLVLDEAD-RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANH-- 311 (519)
T ss_pred ccccceeEEEeccHH-hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhc--
Confidence 357889999999999 999999999999999999 66668999999996 556665554444444433221000000
Q ss_pred cccccccccccCCCC-ChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHH
Q psy3476 392 PIVELDRTKSEKLDP-GPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD 470 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~-~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~ 470 (1417)
.. .......+. .....+...|.+.. ...++++||||.|+..|++++..++. .+|.+..+||+.++++|+
T Consensus 312 ---~i-~qive~~~~~~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~-----~~~~a~~iHGd~sQ~eR~ 381 (519)
T KOG0331|consen 312 ---NI-RQIVEVCDETAKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRR-----KGWPAVAIHGDKSQSERD 381 (519)
T ss_pred ---ch-hhhhhhcCHHHHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHh-----cCcceeeecccccHHHHH
Confidence 00 000011111 11223333444443 56678999999999999999999987 569999999999999999
Q ss_pred HHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEE
Q psy3476 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYR 549 (1417)
Q Consensus 471 ~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~ 549 (1417)
.+++.|++|+..||||||+|++|+|||+|++||| ||+|.+++.|+ ||+||+||.| .|.+|.
T Consensus 382 ~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn--------ydfP~~vEdYV----------HRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 382 WVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN--------YDFPNNVEDYV----------HRIGRTGRAGKKGTAIT 443 (519)
T ss_pred HHHHhcccCCcceEEEcccccccCCCccccEEEe--------CCCCCCHHHHH----------hhcCccccCCCCceEEE
Confidence 9999999999999999999999999999999999 99999988888 9999999988 799999
Q ss_pred ecCHHHHHH
Q psy3476 550 LYSEEQYSL 558 (1417)
Q Consensus 550 L~t~~~~~~ 558 (1417)
+++..++..
T Consensus 444 fft~~~~~~ 452 (519)
T KOG0331|consen 444 FFTSDNAKL 452 (519)
T ss_pred EEeHHHHHH
Confidence 999988764
No 28
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-32 Score=334.58 Aligned_cols=309 Identities=18% Similarity=0.172 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC------------CCcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG------------FQRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~------------~~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
..+|.+++..+.++++++++||||||||..+..++++.. ..++++..|+|.+|.|+.+.+ ..+....
T Consensus 32 t~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~-~~l~~~~ 110 (423)
T PRK04837 32 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADA-EPLAQAT 110 (423)
T ss_pred CHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHH-HHHhccC
Confidence 467899999999999999999999999988666654311 246999999999999997754 3444445
Q ss_pred CCeEEEEEeeccc------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhH
Q psy3476 109 SNLVGYQIRFEKH------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182 (1417)
Q Consensus 109 g~~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1417)
|-.++.....+.. ......|+++|+|.|++.+...
T Consensus 111 ~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~--------------------------------------- 151 (423)
T PRK04837 111 GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN--------------------------------------- 151 (423)
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---------------------------------------
Confidence 5566554433221 1234578888887777654321
Q ss_pred HhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCC
Q psy3476 183 RRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPP 262 (1417)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~ 262 (1417)
T Consensus 152 -------------------------------------------------------------------------------- 151 (423)
T PRK04837 152 -------------------------------------------------------------------------------- 151 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHH
Q psy3476 263 LHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVI 342 (1417)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ll 342 (1417)
...+++++++|+|||| +.++.+|...+.
T Consensus 152 ---------------------------------------------------~~~l~~v~~lViDEad-~l~~~~f~~~i~ 179 (423)
T PRK04837 152 ---------------------------------------------------HINLGAIQVVVLDEAD-RMFDLGFIKDIR 179 (423)
T ss_pred ---------------------------------------------------CcccccccEEEEecHH-HHhhcccHHHHH
Confidence 0236678999999999 677777777766
Q ss_pred HHHhccC--CCCcEEEEccCCCHH--HHH-HHhccCceEEEeCCccc---ceeEEeccccccccccccCCCCChHHHHHH
Q psy3476 343 KCLLHST--AEVKIILMSATINIE--LFH-TYFNRIAKIIKVPGRLY---PIQLEYHPIVELDRTKSEKLDPGPYIRILS 414 (1417)
Q Consensus 343 k~l~~~r--~~~qvIlmSATln~~--~~~-~~f~~~~~vi~v~gr~~---pv~v~~~~~~~~~~~~~~~~~~~~~~~il~ 414 (1417)
..+...+ ...+.+++|||++.. .+. .++ .++..+.+..... .+...+... .......
T Consensus 180 ~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~-~~p~~i~v~~~~~~~~~i~~~~~~~--------------~~~~k~~ 244 (423)
T PRK04837 180 WLFRRMPPANQRLNMLFSATLSYRVRELAFEHM-NNPEYVEVEPEQKTGHRIKEELFYP--------------SNEEKMR 244 (423)
T ss_pred HHHHhCCCccceeEEEEeccCCHHHHHHHHHHC-CCCEEEEEcCCCcCCCceeEEEEeC--------------CHHHHHH
Confidence 6555554 345678999999643 333 344 3444444432211 111111000 0111222
Q ss_pred HHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccC
Q psy3476 415 IIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494 (1417)
Q Consensus 415 ~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GI 494 (1417)
.+...+.....+++||||+++..++.+++.|.. .++.+..+||++++++|..+++.|++|+.+|||||+++++||
T Consensus 245 ~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~-----~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGi 319 (423)
T PRK04837 245 LLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAA-----DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGL 319 (423)
T ss_pred HHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHh-----CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCC
Confidence 333333333467899999999999999999986 578999999999999999999999999999999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
|||+|++||+ ||.|.+...|. ||+|||||.| .|.|+.|+++++...+
T Consensus 320 Dip~v~~VI~--------~d~P~s~~~yi----------qR~GR~gR~G~~G~ai~~~~~~~~~~~ 367 (423)
T PRK04837 320 HIPAVTHVFN--------YDLPDDCEDYV----------HRIGRTGRAGASGHSISLACEEYALNL 367 (423)
T ss_pred CccccCEEEE--------eCCCCchhheE----------eccccccCCCCCeeEEEEeCHHHHHHH
Confidence 9999999999 99998877777 9999999999 7999999998876543
No 29
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.2e-32 Score=343.58 Aligned_cols=207 Identities=20% Similarity=0.330 Sum_probs=157.2
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCH--HHHHHHhcc-CceEEEeCCcc----cceeE
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINI--ELFHTYFNR-IAKIIKVPGRL----YPIQL 388 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~--~~~~~~f~~-~~~vi~v~gr~----~pv~v 388 (1417)
.+.++++||||||| ++++.+|...+.+.+...+++.|++++|||++. +.+.+.+.. ....+.+.... ..+..
T Consensus 274 ~l~~v~~lViDEAd-~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q 352 (545)
T PTZ00110 274 NLRRVTYLVLDEAD-RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQ 352 (545)
T ss_pred ChhhCcEEEeehHH-hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeE
Confidence 46678999999999 888889998888888888899999999999953 455555433 22233322110 00110
Q ss_pred EeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHH
Q psy3476 389 EYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEE 468 (1417)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~e 468 (1417)
.+.. .. .......+...+.... ...+++||||++++.++.+++.|.. .++.+..+||++++++
T Consensus 353 ~~~~--~~--------~~~k~~~L~~ll~~~~--~~~~k~LIF~~t~~~a~~l~~~L~~-----~g~~~~~ihg~~~~~e 415 (545)
T PTZ00110 353 EVFV--VE--------EHEKRGKLKMLLQRIM--RDGDKILIFVETKKGADFLTKELRL-----DGWPALCIHGDKKQEE 415 (545)
T ss_pred EEEE--Ee--------chhHHHHHHHHHHHhc--ccCCeEEEEecChHHHHHHHHHHHH-----cCCcEEEEECCCcHHH
Confidence 0000 00 0011223334443332 1467999999999999999999976 5788999999999999
Q ss_pred HHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeE
Q psy3476 469 QDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVC 547 (1417)
Q Consensus 469 R~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~c 547 (1417)
|..+++.|++|+.+|||||+++++|||||+|++||+ ||.|..+..|+ ||+||+||.| +|.|
T Consensus 416 R~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~--------~d~P~s~~~yv----------qRiGRtGR~G~~G~a 477 (545)
T PTZ00110 416 RTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN--------FDFPNQIEDYV----------HRIGRTGRAGAKGAS 477 (545)
T ss_pred HHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE--------eCCCCCHHHHH----------HHhcccccCCCCceE
Confidence 999999999999999999999999999999999999 99887665555 9999999999 7999
Q ss_pred EEecCHHHHHH
Q psy3476 548 YRLYSEEQYSL 558 (1417)
Q Consensus 548 y~L~t~~~~~~ 558 (1417)
|.|+++++...
T Consensus 478 i~~~~~~~~~~ 488 (545)
T PTZ00110 478 YTFLTPDKYRL 488 (545)
T ss_pred EEEECcchHHH
Confidence 99999887653
No 30
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.3e-32 Score=332.38 Aligned_cols=313 Identities=19% Similarity=0.210 Sum_probs=228.3
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---------CCCcEEEecchHHHHHHHHHHHHHHHccccCC
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---------GFQRIACTQPRRIACISLSKRVAYETLSQYSN 110 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---------~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~ 110 (1417)
.+.+|.+++..+.++++++++||||||||..+..++++. +..++++..|+|.+|.|+++++.. +....+.
T Consensus 24 p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~-l~~~~~~ 102 (434)
T PRK11192 24 PTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARE-LAKHTHL 102 (434)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHH-HHccCCc
Confidence 457899999999999999999999999998765544431 235799999999999999886543 3334444
Q ss_pred eEEEEEeecc------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHh
Q psy3476 111 LVGYQIRFEK------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRR 184 (1417)
Q Consensus 111 ~vGy~ir~e~------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (1417)
.++....... ....+..|+++|+|.|++.+...
T Consensus 103 ~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~----------------------------------------- 141 (434)
T PRK11192 103 DIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE----------------------------------------- 141 (434)
T ss_pred EEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-----------------------------------------
Confidence 5544332111 12334578888888777654321
Q ss_pred hhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCc
Q psy3476 185 KMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264 (1417)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~ 264 (1417)
T Consensus 142 -------------------------------------------------------------------------------- 141 (434)
T PRK11192 142 -------------------------------------------------------------------------------- 141 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHH
Q psy3476 265 CGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKC 344 (1417)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~ 344 (1417)
...+.++++||+|||| ++++.+|...+...
T Consensus 142 -------------------------------------------------~~~~~~v~~lViDEah-~~l~~~~~~~~~~i 171 (434)
T PRK11192 142 -------------------------------------------------NFDCRAVETLILDEAD-RMLDMGFAQDIETI 171 (434)
T ss_pred -------------------------------------------------CcCcccCCEEEEECHH-HHhCCCcHHHHHHH
Confidence 0235678899999999 77888888777777
Q ss_pred HhccCCCCcEEEEccCCCH---HHHHHHhccCceEEEeCCccc-c--eeEEeccccccccccccCCCCChHHHHHHHHHh
Q psy3476 345 LLHSTAEVKIILMSATINI---ELFHTYFNRIAKIIKVPGRLY-P--IQLEYHPIVELDRTKSEKLDPGPYIRILSIIDK 418 (1417)
Q Consensus 345 l~~~r~~~qvIlmSATln~---~~~~~~f~~~~~vi~v~gr~~-p--v~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 418 (1417)
....+...|+++||||++. ..+..++..+...+.+..... . +...+.. ..........+..
T Consensus 172 ~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~-------------~~~~~~k~~~l~~ 238 (434)
T PRK11192 172 AAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYR-------------ADDLEHKTALLCH 238 (434)
T ss_pred HHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEE-------------eCCHHHHHHHHHH
Confidence 6667778899999999963 455555543333333322110 0 1111100 0111233444444
Q ss_pred hCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCC
Q psy3476 419 KYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDG 498 (1417)
Q Consensus 419 ~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~ 498 (1417)
.+.....+++||||+++++++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+
T Consensus 239 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~-----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~ 313 (434)
T PRK11192 239 LLKQPEVTRSIVFVRTRERVHELAGWLRK-----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDD 313 (434)
T ss_pred HHhcCCCCeEEEEeCChHHHHHHHHHHHh-----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCC
Confidence 44434568999999999999999999987 5788999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHhh
Q psy3476 499 IRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLLA 560 (1417)
Q Consensus 499 V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l~ 560 (1417)
|++||+ ||.|.....| .||+|||||.| .|.++.+++..+...+.
T Consensus 314 v~~VI~--------~d~p~s~~~y----------iqr~GR~gR~g~~g~ai~l~~~~d~~~~~ 358 (434)
T PRK11192 314 VSHVIN--------FDMPRSADTY----------LHRIGRTGRAGRKGTAISLVEAHDHLLLG 358 (434)
T ss_pred CCEEEE--------ECCCCCHHHH----------hhcccccccCCCCceEEEEecHHHHHHHH
Confidence 999999 8887655544 49999999998 79999999988876544
No 31
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.2e-32 Score=339.94 Aligned_cols=209 Identities=22% Similarity=0.281 Sum_probs=153.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCcccce---eEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRLYPI---QLE 389 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~pv---~v~ 389 (1417)
..++++++||+|||| ++++.+|...+.+.+... ++.|++++|||++ .+.+..++..+...+.+.....+. ...
T Consensus 266 ~~l~~v~~lViDEad-~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~ 343 (518)
T PLN00206 266 IELDNVSVLVLDEVD-CMLERGFRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQL 343 (518)
T ss_pred ccchheeEEEeecHH-HHhhcchHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEE
Confidence 346788999999999 677777777666655444 5689999999995 456777775555555543221111 111
Q ss_pred eccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHH
Q psy3476 390 YHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQ 469 (1417)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR 469 (1417)
+.... .......+.+.+.... ...+++||||+++..++.+++.|... .++.+..+||++++++|
T Consensus 344 ~~~~~----------~~~k~~~l~~~l~~~~--~~~~~~iVFv~s~~~a~~l~~~L~~~----~g~~~~~~Hg~~~~~eR 407 (518)
T PLN00206 344 AIWVE----------TKQKKQKLFDILKSKQ--HFKPPAVVFVSSRLGADLLANAITVV----TGLKALSIHGEKSMKER 407 (518)
T ss_pred EEecc----------chhHHHHHHHHHHhhc--ccCCCEEEEcCCchhHHHHHHHHhhc----cCcceEEeeCCCCHHHH
Confidence 10000 0011123333333221 22468999999999999999988642 46789999999999999
Q ss_pred HHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEE
Q psy3476 470 DRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCY 548 (1417)
Q Consensus 470 ~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy 548 (1417)
..+++.|++|+.+|||||+++++|||+|+|++||+ ||.|.+... |.||+|||||.| +|.++
T Consensus 408 ~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~--------~d~P~s~~~----------yihRiGRaGR~g~~G~ai 469 (518)
T PLN00206 408 REVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII--------FDMPNTIKE----------YIHQIGRASRMGEKGTAI 469 (518)
T ss_pred HHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE--------eCCCCCHHH----------HHHhccccccCCCCeEEE
Confidence 99999999999999999999999999999999999 888775544 559999999999 79999
Q ss_pred EecCHHHHHHh
Q psy3476 549 RLYSEEQYSLL 559 (1417)
Q Consensus 549 ~L~t~~~~~~l 559 (1417)
.++++++...+
T Consensus 470 ~f~~~~~~~~~ 480 (518)
T PLN00206 470 VFVNEEDRNLF 480 (518)
T ss_pred EEEchhHHHHH
Confidence 99998876544
No 32
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.5e-32 Score=333.74 Aligned_cols=206 Identities=22% Similarity=0.302 Sum_probs=156.9
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCH--HHHHHHhccCceEEEeCCcccc---eeEEe
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINI--ELFHTYFNRIAKIIKVPGRLYP---IQLEY 390 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~--~~~~~~f~~~~~vi~v~gr~~p---v~v~~ 390 (1417)
.++++++||||||| +.++.++...+...+...+...|+++||||++. ..+..++..+...+.+..+... +..++
T Consensus 146 ~l~~v~~lViDEah-~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~ 224 (456)
T PRK10590 146 KLDQVEILVLDEAD-RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHV 224 (456)
T ss_pred ccccceEEEeecHH-HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEE
Confidence 46788999999999 777888887777777777788899999999963 4555555344444444322211 11111
Q ss_pred ccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHH
Q psy3476 391 HPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD 470 (1417)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~ 470 (1417)
.. .+ .......+...+......++||||+++.+++.+++.|.. .++.+..+||++++++|.
T Consensus 225 ~~-----------~~---~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~-----~g~~~~~lhg~~~~~~R~ 285 (456)
T PRK10590 225 HF-----------VD---KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNK-----DGIRSAAIHGNKSQGART 285 (456)
T ss_pred EE-----------cC---HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHH-----CCCCEEEEECCCCHHHHH
Confidence 10 00 011122233333334457899999999999999999976 578899999999999999
Q ss_pred HHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEE
Q psy3476 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYR 549 (1417)
Q Consensus 471 ~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~ 549 (1417)
.+++.|++|+.+|||||+++++|||||+|++||+ ||.|.....|+ ||+|||||.| .|.|+.
T Consensus 286 ~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~--------~~~P~~~~~yv----------qR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 286 RALADFKSGDIRVLVATDIAARGLDIEELPHVVN--------YELPNVPEDYV----------HRIGRTGRAAATGEALS 347 (456)
T ss_pred HHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE--------eCCCCCHHHhh----------hhccccccCCCCeeEEE
Confidence 9999999999999999999999999999999999 99887655555 9999999999 799999
Q ss_pred ecCHHHHHHh
Q psy3476 550 LYSEEQYSLL 559 (1417)
Q Consensus 550 L~t~~~~~~l 559 (1417)
+++.++...+
T Consensus 348 l~~~~d~~~~ 357 (456)
T PRK10590 348 LVCVDEHKLL 357 (456)
T ss_pred EecHHHHHHH
Confidence 9998876543
No 33
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-32 Score=337.90 Aligned_cols=312 Identities=23% Similarity=0.274 Sum_probs=237.2
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC-----C-c-EEEecchHHHHHHHHHHHHHHHcccc-CCe
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF-----Q-R-IACTQPRRIACISLSKRVAYETLSQY-SNL 111 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~-----~-~-i~~tqPrr~aa~~~a~rva~e~~~~~-g~~ 111 (1417)
....|...+..+..++++++.|+||||||..+..++++.-. . . .++..|+|.+|.|+++.+..- +... +-.
T Consensus 52 pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~-~~~~~~~~ 130 (513)
T COG0513 52 PTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKL-GKNLGGLR 130 (513)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHH-HhhcCCcc
Confidence 34668899999999999999999999999887777776422 1 2 789999999999998755433 3322 233
Q ss_pred EEEEEeeccc------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhh
Q psy3476 112 VGYQIRFEKH------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRK 185 (1417)
Q Consensus 112 vGy~ir~e~~------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1417)
+...+...+. .....+|+++|||.|++++...
T Consensus 131 ~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~------------------------------------------ 168 (513)
T COG0513 131 VAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG------------------------------------------ 168 (513)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC------------------------------------------
Confidence 4443333221 1224789999999888765432
Q ss_pred hhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcC
Q psy3476 186 MLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHC 265 (1417)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~ 265 (1417)
T Consensus 169 -------------------------------------------------------------------------------- 168 (513)
T COG0513 169 -------------------------------------------------------------------------------- 168 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHH
Q psy3476 266 GGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCL 345 (1417)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l 345 (1417)
...++++.++|+|||| |+++.+|...+.+++
T Consensus 169 ------------------------------------------------~l~l~~v~~lVlDEAD-rmLd~Gf~~~i~~I~ 199 (513)
T COG0513 169 ------------------------------------------------KLDLSGVETLVLDEAD-RMLDMGFIDDIEKIL 199 (513)
T ss_pred ------------------------------------------------CcchhhcCEEEeccHh-hhhcCCCHHHHHHHH
Confidence 0346789999999999 899999999999999
Q ss_pred hccCCCCcEEEEccCCCH--HHHHHHhccCceEEEeCCcc-----cceeEEeccccccccccccCCCCChHHHHHHHHHh
Q psy3476 346 LHSTAEVKIILMSATINI--ELFHTYFNRIAKIIKVPGRL-----YPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDK 418 (1417)
Q Consensus 346 ~~~r~~~qvIlmSATln~--~~~~~~f~~~~~vi~v~gr~-----~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 418 (1417)
...+.+.|++++|||++. ..++.-+..++..+.+.... ..++..|..... .......+..
T Consensus 200 ~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~-------------~~~k~~~L~~ 266 (513)
T COG0513 200 KALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES-------------EEEKLELLLK 266 (513)
T ss_pred HhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC-------------HHHHHHHHHH
Confidence 999999999999999964 34443333455555554211 112222221111 0123444444
Q ss_pred hCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCC
Q psy3476 419 KYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDG 498 (1417)
Q Consensus 419 ~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~ 498 (1417)
.+.....+++||||+|+..++.++..|.. .++.+..+||+|++++|.++++.|++|..+|+||||+|++|||||+
T Consensus 267 ll~~~~~~~~IVF~~tk~~~~~l~~~l~~-----~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~ 341 (513)
T COG0513 267 LLKDEDEGRVIVFVRTKRLVEELAESLRK-----RGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPD 341 (513)
T ss_pred HHhcCCCCeEEEEeCcHHHHHHHHHHHHH-----CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccc
Confidence 44444556899999999999999999987 6799999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHH-HHHHh
Q psy3476 499 IRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEE-QYSLL 559 (1417)
Q Consensus 499 V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~-~~~~l 559 (1417)
|.+||| ||.|.....|+ ||+||+||.| .|.++.|+++. +...+
T Consensus 342 v~~Vin--------yD~p~~~e~yv----------HRiGRTgRaG~~G~ai~fv~~~~e~~~l 386 (513)
T COG0513 342 VSHVIN--------YDLPLDPEDYV----------HRIGRTGRAGRKGVAISFVTEEEEVKKL 386 (513)
T ss_pred cceeEE--------ccCCCCHHHhe----------eccCccccCCCCCeEEEEeCcHHHHHHH
Confidence 999999 99999888888 9999999999 79999999864 55443
No 34
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.9e-32 Score=340.47 Aligned_cols=312 Identities=20% Similarity=0.259 Sum_probs=228.6
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
..+.+|.+++..+.+++++|++||||||||.++..++++.. ..+++|+.|+|.+|.|+++.+..-.....|..+.
T Consensus 28 ~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~ 107 (629)
T PRK11634 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVV 107 (629)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 34577999999999999999999999999998777766532 2478999999999999988776544332233333
Q ss_pred EEEeecc------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhh
Q psy3476 114 YQIRFEK------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKML 187 (1417)
Q Consensus 114 y~ir~e~------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (1417)
......+ .....+.|+++|+|.+++.+...
T Consensus 108 ~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~-------------------------------------------- 143 (629)
T PRK11634 108 ALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG-------------------------------------------- 143 (629)
T ss_pred EEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC--------------------------------------------
Confidence 2222111 11234678888888777655332
Q ss_pred ccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCC
Q psy3476 188 KADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGG 267 (1417)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~ 267 (1417)
T Consensus 144 -------------------------------------------------------------------------------- 143 (629)
T PRK11634 144 -------------------------------------------------------------------------------- 143 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhc
Q psy3476 268 EIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 347 (1417)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~ 347 (1417)
...++++++||||||| .+++.+|...+...+..
T Consensus 144 ----------------------------------------------~l~l~~l~~lVlDEAd-~ml~~gf~~di~~Il~~ 176 (629)
T PRK11634 144 ----------------------------------------------TLDLSKLSGLVLDEAD-EMLRMGFIEDVETIMAQ 176 (629)
T ss_pred ----------------------------------------------CcchhhceEEEeccHH-HHhhcccHHHHHHHHHh
Confidence 0236678999999999 56777888888888888
Q ss_pred cCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCccc--c-eeEEeccccccccccccCCCCChHHHHHHHHHhhCCC
Q psy3476 348 STAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRLY--P-IQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPR 422 (1417)
Q Consensus 348 ~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~--p-v~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 422 (1417)
.+...|+++||||++ ...+.+.|..+...+.+..... + +...|.... .......+.+.+..
T Consensus 177 lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~--------------~~~k~~~L~~~L~~ 242 (629)
T PRK11634 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW--------------GMRKNEALVRFLEA 242 (629)
T ss_pred CCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEec--------------hhhHHHHHHHHHHh
Confidence 888999999999995 3344444434555555443221 1 111111100 00111222222222
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFV 502 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~V 502 (1417)
....++||||+++..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++|
T Consensus 243 ~~~~~~IVF~~tk~~a~~l~~~L~~-----~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 243 EDFDAAIIFVRTKNATLEVAEALER-----NGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred cCCCCEEEEeccHHHHHHHHHHHHh-----CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 3457899999999999999999987 67889999999999999999999999999999999999999999999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
|+ ||.|.+...|+ ||+|||||.| .|.++.+++..+...
T Consensus 318 I~--------~d~P~~~e~yv----------qRiGRtGRaGr~G~ai~~v~~~e~~~ 356 (629)
T PRK11634 318 VN--------YDIPMDSESYV----------HRIGRTGRAGRAGRALLFVENRERRL 356 (629)
T ss_pred EE--------eCCCCCHHHHH----------HHhccccCCCCcceEEEEechHHHHH
Confidence 99 99887655555 9999999999 699999998876543
No 35
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.6e-32 Score=338.05 Aligned_cols=313 Identities=17% Similarity=0.199 Sum_probs=221.5
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC------------CCcEEEecchHHHHHHHHHHHHHHHccc
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG------------FQRIACTQPRRIACISLSKRVAYETLSQ 107 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~------------~~~i~~tqPrr~aa~~~a~rva~e~~~~ 107 (1417)
.+.+|.+.+..+.++++++++||||||||..+..++++.. ..++++..|+|.+|.|+++.+ ..++..
T Consensus 32 ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~-~~l~~~ 110 (572)
T PRK04537 32 CTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDA-VKFGAD 110 (572)
T ss_pred CCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHH-HHHhcc
Confidence 3567899999999999999999999999998776665421 247999999999999998874 444445
Q ss_pred cCCeEEEEEeeccc------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhh
Q psy3476 108 YSNLVGYQIRFEKH------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAP 181 (1417)
Q Consensus 108 ~g~~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1417)
.|-.|+........ ......|+++|+|.|++.+...
T Consensus 111 ~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~-------------------------------------- 152 (572)
T PRK04537 111 LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH-------------------------------------- 152 (572)
T ss_pred CCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc--------------------------------------
Confidence 55555543332211 1234567788887777654321
Q ss_pred HHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCC
Q psy3476 182 KRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISP 261 (1417)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~ 261 (1417)
T Consensus 153 -------------------------------------------------------------------------------- 152 (572)
T PRK04537 153 -------------------------------------------------------------------------------- 152 (572)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHH
Q psy3476 262 PLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV 341 (1417)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~l 341 (1417)
....+.++++||||||| +.++.+|...+
T Consensus 153 ---------------------------------------------------~~~~l~~v~~lViDEAh-~lld~gf~~~i 180 (572)
T PRK04537 153 ---------------------------------------------------KVVSLHACEICVLDEAD-RMFDLGFIKDI 180 (572)
T ss_pred ---------------------------------------------------cccchhheeeeEecCHH-HHhhcchHHHH
Confidence 00235578899999999 56677777766
Q ss_pred HHHHhccCC--CCcEEEEccCCCHH---HHHHHhccCceEEEeCCccc-ceeEEeccccccccccccCCCCChHHHHHHH
Q psy3476 342 IKCLLHSTA--EVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLY-PIQLEYHPIVELDRTKSEKLDPGPYIRILSI 415 (1417)
Q Consensus 342 lk~l~~~r~--~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~-pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~ 415 (1417)
...+...+. +.|+++||||++.. ....++ .....+.+..... ...+....... ........
T Consensus 181 ~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l-~~p~~i~v~~~~~~~~~i~q~~~~~------------~~~~k~~~ 247 (572)
T PRK04537 181 RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHM-NEPEKLVVETETITAARVRQRIYFP------------ADEEKQTL 247 (572)
T ss_pred HHHHHhcccccCceEEEEeCCccHHHHHHHHHHh-cCCcEEEeccccccccceeEEEEec------------CHHHHHHH
Confidence 666555543 67999999999643 233444 3322232222111 11111000000 01112223
Q ss_pred HHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCC
Q psy3476 416 IDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495 (1417)
Q Consensus 416 l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GId 495 (1417)
+...+......++||||++++.++.+++.|.+ .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||
T Consensus 248 L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~-----~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGID 322 (572)
T PRK04537 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLER-----HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLH 322 (572)
T ss_pred HHHHHhcccCCcEEEEeCCHHHHHHHHHHHHH-----cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCC
Confidence 33333334567899999999999999999987 5688999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 496 IP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
||+|++||+ ||.|.....| .||+|||||.| .|.|+.|+++.+...+
T Consensus 323 ip~V~~VIn--------yd~P~s~~~y----------vqRiGRaGR~G~~G~ai~~~~~~~~~~l 369 (572)
T PRK04537 323 IDGVKYVYN--------YDLPFDAEDY----------VHRIGRTARLGEEGDAISFACERYAMSL 369 (572)
T ss_pred ccCCCEEEE--------cCCCCCHHHH----------hhhhcccccCCCCceEEEEecHHHHHHH
Confidence 999999999 8887655544 59999999999 7999999988765443
No 36
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=6e-31 Score=334.02 Aligned_cols=417 Identities=21% Similarity=0.247 Sum_probs=263.0
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCccc--ccCcchHHHHHHHHhccCCCCcEEEEccCC-CHHHHHHHhc
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHER--HLHGDFLLGVIKCLLHSTAEVKIILMSATI-NIELFHTYFN 371 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER--~l~~d~ll~llk~l~~~r~~~qvIlmSATl-n~~~~~~~f~ 371 (1417)
|++|+||++++........ ++.++++|||||+|-- ..++..++.++.+.....+..|+|++|||+ |..++++|+
T Consensus 124 ~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL- 200 (766)
T COG1204 124 DVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWL- 200 (766)
T ss_pred CEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHh-
Confidence 5667777777765554432 7889999999999921 124557788888887777789999999999 899999999
Q ss_pred cCceEEEeCCcccceeEE--eccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhh
Q psy3476 372 RIAKIIKVPGRLYPIQLE--YHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYN 449 (1417)
Q Consensus 372 ~~~~vi~v~gr~~pv~v~--~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~ 449 (1417)
++..+...+++.|..-. +.......................+.+...+ .++|++||||++++.+...++.+....
T Consensus 201 -~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~ 277 (766)
T COG1204 201 -NAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKM 277 (766)
T ss_pred -CCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHH
Confidence 45544555555443211 1111000000000001111223333333333 457899999999999999999987411
Q ss_pred h----------------c----------------cCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 450 E----------------K----------------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 450 ~----------------~----------------~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
. . .-...+..+|+||+.++|..+++.|+.|++|||+||+++++|||.|
T Consensus 278 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLP 357 (766)
T COG1204 278 SATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLP 357 (766)
T ss_pred hhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCc
Confidence 0 0 0122467789999999999999999999999999999999999999
Q ss_pred CeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEec-CHHHHH---HhhccCCCccccc
Q psy3476 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLY-SEEQYS---LLAEYSTPEIRRV 570 (1417)
Q Consensus 498 ~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~-t~~~~~---~l~~~~~pEI~r~ 570 (1417)
+-++||. ...+||+..+ ...+++.++.||.|||||+| -|..+.+. +.++.+ .......||....
T Consensus 358 A~~VIIk----~~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s 428 (766)
T COG1204 358 ARTVIIK----DTRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIES 428 (766)
T ss_pred ceEEEEe----eeEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHH
Confidence 9999995 3456776222 45789999999999999999 36666555 333222 2222344444111
Q ss_pred ------ChHHHHHHHHhhCCCCCc-----------CCCCCC----CCCcchhHHHHHHHHhcC-CCCCC---CCcChhhh
Q psy3476 571 ------SIDSLLLSLVCMGLGDVR-----------KFPFLE----APPAENIESSVRSLTQHG-AIDSK---ERVTSLGR 625 (1417)
Q Consensus 571 ------~L~~~lL~lk~lgi~~~~-----------~f~~l~----pP~~~~l~~Al~~L~~lG-aId~~---~~lT~LG~ 625 (1417)
++...++.+.+.+ +.. .|.... --....+..++..|.+.+ .++.. -..|++|+
T Consensus 429 ~l~~~~~~~~~l~~v~~~~--~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~ 506 (766)
T COG1204 429 KLGDELNLRTFLLGVISVG--DAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALHATELGK 506 (766)
T ss_pred hhcccccchheEEEEEecc--chhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccchhHHHH
Confidence 1222222222222 111 010111 123346788899999986 55543 35899999
Q ss_pred hccCCCCChhhHHHHHhhhccCCh-hhHHHHhhhccCCCccccCCCCChhHHHH-HhhcccCCCChH-------------
Q psy3476 626 FLSDLPVDIPLGKMLVFGSMFHQI-DTVLSLAAVLSVQSPFTNRAFRDPDCETA-RKELESNHGDPL------------- 690 (1417)
Q Consensus 626 ~ls~lpldp~lak~Ll~~~~f~cl-e~vl~IaA~Lsv~~~F~~~~~~~~~~~~~-r~~f~~~~sD~l------------- 690 (1417)
.+++++++|..++.+.......-. ...+.+...++..+.|.....+....... ...+. .++|.+
T Consensus 507 ~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~ 585 (766)
T COG1204 507 LVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELVLDELE-EQSDYLLGERLDELAVEYN 585 (766)
T ss_pred HhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhhhhhhhhhHHHHH-hcchHHhhccccccchhhH
Confidence 999999999999998877654433 25667777777777776544333322221 11111 111111
Q ss_pred HHHH------HHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy3476 691 TVLN------AYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQF 733 (1417)
Q Consensus 691 tlln------~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~QL 733 (1417)
.+++ ....|... .....-+.++++....+..+..-+.++
T Consensus 586 ~~l~~~~~~~~l~~wi~~----~~~~~i~~~~~~~~~dl~~~~~~a~w~ 630 (766)
T COG1204 586 LLLQALKTAARLLDWINE----ADEDEILNAYGVAPGDLLRIAETAEWL 630 (766)
T ss_pred HHHHHHHHHHHHHHHHHh----CcHHHHHHHhCcchhhHHhhcchhhhh
Confidence 1121 23345432 134456888999998888888877777
No 37
>PTZ00424 helicase 45; Provisional
Probab=99.98 E-value=6.4e-31 Score=317.60 Aligned_cols=208 Identities=20% Similarity=0.328 Sum_probs=150.9
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHH--HHHHHhccCceEEEeCCcccc---eeEEe
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIE--LFHTYFNRIAKIIKVPGRLYP---IQLEY 390 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~--~~~~~f~~~~~vi~v~gr~~p---v~v~~ 390 (1417)
.++++++||+||+| +..+.++...+...+....++.|++++|||++.+ .+...+..+...+.+...... +...+
T Consensus 167 ~l~~i~lvViDEah-~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (401)
T PTZ00424 167 RVDDLKLFILDEAD-EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFY 245 (401)
T ss_pred ccccccEEEEecHH-HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEE
Confidence 46788999999999 4455556656666666777889999999999643 333333233333333322111 11111
Q ss_pred ccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHH
Q psy3476 391 HPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD 470 (1417)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~ 470 (1417)
... + ........+...+......++||||+++++++.+++.+.. .++.+..+||++++++|.
T Consensus 246 ~~~-----------~--~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~-----~~~~~~~~h~~~~~~~R~ 307 (401)
T PTZ00424 246 VAV-----------E--KEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHE-----RDFTVSCMHGDMDQKDRD 307 (401)
T ss_pred Eec-----------C--hHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHH-----CCCcEEEEeCCCCHHHHH
Confidence 100 0 0011122222222223456899999999999999999976 567899999999999999
Q ss_pred HHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEE
Q psy3476 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYR 549 (1417)
Q Consensus 471 ~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~ 549 (1417)
.+++.|++|+.+|||||+++++|||+|++++||+ ||.|.....|. ||+|||||.| .|.|+.
T Consensus 308 ~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~--------~~~p~s~~~y~----------qr~GRagR~g~~G~~i~ 369 (401)
T PTZ00424 308 LIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN--------YDLPASPENYI----------HRIGRSGRFGRKGVAIN 369 (401)
T ss_pred HHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE--------ECCCCCHHHEe----------ecccccccCCCCceEEE
Confidence 9999999999999999999999999999999999 88776555554 9999999998 799999
Q ss_pred ecCHHHHHHhh
Q psy3476 550 LYSEEQYSLLA 560 (1417)
Q Consensus 550 L~t~~~~~~l~ 560 (1417)
++++++.+.+.
T Consensus 370 l~~~~~~~~~~ 380 (401)
T PTZ00424 370 FVTPDDIEQLK 380 (401)
T ss_pred EEcHHHHHHHH
Confidence 99998876543
No 38
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=5.8e-31 Score=324.81 Aligned_cols=206 Identities=20% Similarity=0.313 Sum_probs=148.7
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccC--CCCcEEEEccCCC--HHHHHHHhccCceEEEeCCcccc---ee
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST--AEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRLYP---IQ 387 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r--~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~p---v~ 387 (1417)
..++++++|||||+| +.++.++...+.+.+.... .+.|+|++|||++ ...+.+.+..+...+.+...... +.
T Consensus 233 ~~l~~l~~lViDEah-~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 311 (475)
T PRK01297 233 VHLDMVEVMVLDEAD-RMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVE 311 (475)
T ss_pred cccccCceEEechHH-HHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCccc
Confidence 357788999999999 5566666655555544443 3579999999994 34455444345544444322111 11
Q ss_pred EEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHH
Q psy3476 388 LEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLE 467 (1417)
Q Consensus 388 v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~ 467 (1417)
.++.... .. .....+.+.+.....+++||||+++++++.+++.|.+ .++.+..+||+++++
T Consensus 312 ~~~~~~~----------~~----~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~-----~~~~~~~~~g~~~~~ 372 (475)
T PRK01297 312 QHVYAVA----------GS----DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVK-----DGINAAQLSGDVPQH 372 (475)
T ss_pred EEEEEec----------ch----hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHH-----cCCCEEEEECCCCHH
Confidence 1111000 00 1112222222223456899999999999999999976 567899999999999
Q ss_pred HHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCe
Q psy3476 468 EQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGV 546 (1417)
Q Consensus 468 eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~ 546 (1417)
+|.++++.|++|+++|||||+++++|||||++++||+ ||.|. |.++|.||+|||||.| .|.
T Consensus 373 ~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~~~P~----------s~~~y~Qr~GRaGR~g~~g~ 434 (475)
T PRK01297 373 KRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN--------FTLPE----------DPDDYVHRIGRTGRAGASGV 434 (475)
T ss_pred HHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE--------eCCCC----------CHHHHHHhhCccCCCCCCce
Confidence 9999999999999999999999999999999999999 77765 4556669999999999 799
Q ss_pred EEEecCHHHHHH
Q psy3476 547 CYRLYSEEQYSL 558 (1417)
Q Consensus 547 cy~L~t~~~~~~ 558 (1417)
++.++++++...
T Consensus 435 ~i~~~~~~d~~~ 446 (475)
T PRK01297 435 SISFAGEDDAFQ 446 (475)
T ss_pred EEEEecHHHHHH
Confidence 999999876543
No 39
>KOG0345|consensus
Probab=99.98 E-value=1.6e-31 Score=306.08 Aligned_cols=326 Identities=21% Similarity=0.242 Sum_probs=242.1
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC--------C--cEEEecchHHHHHHHHHHHHHHHccccC
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF--------Q--RIACTQPRRIACISLSKRVAYETLSQYS 109 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~--------~--~i~~tqPrr~aa~~~a~rva~e~~~~~g 109 (1417)
+.+.|...+..+.+++.+++.++||||||.++..++++.-. . -.++..|+|.+|.|+.+ |+..+.+.+-
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~-V~~~F~~~l~ 107 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIRE-VAQPFLEHLP 107 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHH-HHHHHHHhhh
Confidence 45668999999999999999999999999998888776421 1 35677899999999876 4444444321
Q ss_pred C-eEEEEEeecc-------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhh
Q psy3476 110 N-LVGYQIRFEK-------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAP 181 (1417)
Q Consensus 110 ~-~vGy~ir~e~-------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1417)
+ .+-..|.+.+ -..+...|+++|||.|++.++...
T Consensus 108 ~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~------------------------------------- 150 (567)
T KOG0345|consen 108 NLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREA------------------------------------- 150 (567)
T ss_pred ccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchh-------------------------------------
Confidence 1 1111222211 123567799999999998876530
Q ss_pred HHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCC
Q psy3476 182 KRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISP 261 (1417)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~ 261 (1417)
T Consensus 151 -------------------------------------------------------------------------------- 150 (567)
T KOG0345|consen 151 -------------------------------------------------------------------------------- 150 (567)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHH
Q psy3476 262 PLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV 341 (1417)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~l 341 (1417)
....+.+++++|+|||| |.++.+|...+
T Consensus 151 ---------------------------------------------------~~l~~rsLe~LVLDEAD-rLldmgFe~~~ 178 (567)
T KOG0345|consen 151 ---------------------------------------------------EKLSFRSLEILVLDEAD-RLLDMGFEASV 178 (567)
T ss_pred ---------------------------------------------------hhccccccceEEecchH-hHhcccHHHHH
Confidence 00124578899999999 99999999999
Q ss_pred HHHHhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCcc---cc--eeEEeccccccccccccCCCCChHHHHHH
Q psy3476 342 IKCLLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRL---YP--IQLEYHPIVELDRTKSEKLDPGPYIRILS 414 (1417)
Q Consensus 342 lk~l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~---~p--v~v~~~~~~~~~~~~~~~~~~~~~~~il~ 414 (1417)
-.++..++.+.+.=+||||.+ ++++....-.|+..|.+.... .| +..+|.... +. ....
T Consensus 179 n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~-------------a~-eK~~ 244 (567)
T KOG0345|consen 179 NTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE-------------AD-EKLS 244 (567)
T ss_pred HHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEec-------------HH-HHHH
Confidence 999999999999999999994 556666555666666665433 34 333333221 11 1223
Q ss_pred HHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccC
Q psy3476 415 IIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494 (1417)
Q Consensus 415 ~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GI 494 (1417)
.+.+.+.+...+++|||.+|...++.....+..+. ....++.+||.|.+.+|.++++.|.+....+++|||+|+|||
T Consensus 245 ~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l---~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 245 QLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL---KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHhccccccEEEEecCcchHHHHHHHHHHHh---CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 33334444567899999999999999999988763 567899999999999999999999998899999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCH--HHHHHhhc-cCCCccccc
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSE--EQYSLLAE-YSTPEIRRV 570 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~--~~~~~l~~-~~~pEI~r~ 570 (1417)
|||+|++||+ ||+|...+.++ ||+||+||.| .|.++.|..+ ++|-.|.. ...|++.+.
T Consensus 322 Dip~iD~VvQ--------~DpP~~~~~Fv----------HR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~ 383 (567)
T KOG0345|consen 322 DIPGIDLVVQ--------FDPPKDPSSFV----------HRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERI 383 (567)
T ss_pred CCCCceEEEe--------cCCCCChhHHH----------hhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhh
Confidence 9999999999 99999888877 9999999999 6887776644 34444433 334666554
No 40
>KOG0342|consensus
Probab=99.97 E-value=4.8e-31 Score=304.60 Aligned_cols=320 Identities=19% Similarity=0.195 Sum_probs=241.4
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc----CC-----CcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA----GF-----QRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~----~~-----~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
.-+...|+..+..+..++.+++.|-||||||.++..+..|. .+ -.+++..|||..|+|.+..+-+-+....
T Consensus 103 ~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~ 182 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHE 182 (543)
T ss_pred cchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCC
Confidence 34567788999999999999999999999998755554443 22 2478888999999999874444443444
Q ss_pred CCeEEEEEeecccc------cCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhH
Q psy3476 109 SNLVGYQIRFEKHR------REKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182 (1417)
Q Consensus 109 g~~vGy~ir~e~~~------~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1417)
+.+||+.|.+.... .....|+++|||.|++++++.
T Consensus 183 ~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt--------------------------------------- 223 (543)
T KOG0342|consen 183 SITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNT--------------------------------------- 223 (543)
T ss_pred CcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcC---------------------------------------
Confidence 78899988776543 236889999999999998764
Q ss_pred HhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCC
Q psy3476 183 RRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPP 262 (1417)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~ 262 (1417)
++
T Consensus 224 ---------------------------------------------------------------------~~--------- 225 (543)
T KOG0342|consen 224 ---------------------------------------------------------------------SG--------- 225 (543)
T ss_pred ---------------------------------------------------------------------Cc---------
Confidence 00
Q ss_pred CcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHH
Q psy3476 263 LHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVI 342 (1417)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ll 342 (1417)
....+.+++|+|||| |.++.+|..++.
T Consensus 226 ----------------------------------------------------f~~r~~k~lvlDEAD-rlLd~GF~~di~ 252 (543)
T KOG0342|consen 226 ----------------------------------------------------FLFRNLKCLVLDEAD-RLLDIGFEEDVE 252 (543)
T ss_pred ----------------------------------------------------chhhccceeEeecch-hhhhcccHHHHH
Confidence 123455899999999 999999999999
Q ss_pred HHHhccCCCCcEEEEccCCC--HHHHHHHhc-cCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhh
Q psy3476 343 KCLLHSTAEVKIILMSATIN--IELFHTYFN-RIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKK 419 (1417)
Q Consensus 343 k~l~~~r~~~qvIlmSATln--~~~~~~~f~-~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 419 (1417)
+++...+...|..++|||.+ +++++..-. .++..+.+....-+.+..-.+ ..+..... ...+..+...+.+.
T Consensus 253 ~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~---Qgyvv~~~--~~~f~ll~~~LKk~ 327 (543)
T KOG0342|consen 253 QIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLE---QGYVVAPS--DSRFSLLYTFLKKN 327 (543)
T ss_pred HHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhccc---ceEEeccc--cchHHHHHHHHHHh
Confidence 99999999999999999996 344444332 234444433221111111000 00000000 11134455555554
Q ss_pred CCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCe
Q psy3476 420 YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGI 499 (1417)
Q Consensus 420 ~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V 499 (1417)
.. ..+|+|||+|...+..+++.|+. ..+.|..+||+.++..|..++..|++.+.-||||||+++||+|+|+|
T Consensus 328 ~~---~~KiiVF~sT~~~vk~~~~lL~~-----~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 328 IK---RYKIIVFFSTCMSVKFHAELLNY-----IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred cC---CceEEEEechhhHHHHHHHHHhh-----cCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 32 37899999999999999999986 57889999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 500 RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
+.||+ ||+|.+...|+ ||+||+||.| .|..+.+..+++..-
T Consensus 400 ~~VvQ--------~~~P~d~~~YI----------HRvGRTaR~gk~G~alL~l~p~El~F 441 (543)
T KOG0342|consen 400 DWVVQ--------YDPPSDPEQYI----------HRVGRTAREGKEGKALLLLAPWELGF 441 (543)
T ss_pred eEEEE--------eCCCCCHHHHH----------HHhccccccCCCceEEEEeChhHHHH
Confidence 99999 99999877777 9999999998 799999988877643
No 41
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.97 E-value=2.7e-30 Score=300.27 Aligned_cols=328 Identities=22% Similarity=0.269 Sum_probs=231.4
Q ss_pred cccchhhhhhccccccccccccCCCCccEEEEecCc--ccccCcchHHHHHHHHhccCCCCcEEEEccCC-CHHHHHHHh
Q psy3476 294 GDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIH--ERHLHGDFLLGVIKCLLHSTAEVKIILMSATI-NIELFHTYF 370 (1417)
Q Consensus 294 ~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaH--ER~l~~d~ll~llk~l~~~r~~~qvIlmSATl-n~~~~~~~f 370 (1417)
+|++|||-+-+++.-.. ...+.++++|||||+| +..-.+.-+.+++.++....++.|+|.+|||+ |++.+++.+
T Consensus 316 ADIIVGTYEGiD~lLRt---g~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l 392 (830)
T COG1202 316 ADIIVGTYEGIDYLLRT---GKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKL 392 (830)
T ss_pred CcEEEeechhHHHHHHc---CCcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHh
Confidence 45566666655543222 1678899999999999 11122345678888888888999999999999 999999999
Q ss_pred ccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhh----CCCCCCCcEEEEeCCHHHHHHHHHHHH
Q psy3476 371 NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKK----YPRTERGDVLIFMSGISEISSIVRAAQ 446 (1417)
Q Consensus 371 ~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~----~~~~~~g~iLVFl~~~~eie~la~~L~ 446 (1417)
++..+..+.|++|++-|..-...... ....+..++... ....-.|++|||.+++..|..+++.|.
T Consensus 393 --~a~lV~y~~RPVplErHlvf~~~e~e---------K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~ 461 (830)
T COG1202 393 --GAKLVLYDERPVPLERHLVFARNESE---------KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALT 461 (830)
T ss_pred --CCeeEeecCCCCChhHeeeeecCchH---------HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhh
Confidence 68899999999998866543221110 011122222222 223457999999999999999999998
Q ss_pred hhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceee
Q psy3476 447 EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW 526 (1417)
Q Consensus 447 ~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ 526 (1417)
. .++.+.|+|+||+..+|..++..|.++.+.++|+|..++.|||+|+-.+|..| -.....|
T Consensus 462 ~-----kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs--------------LaMG~~W 522 (830)
T COG1202 462 G-----KGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES--------------LAMGIEW 522 (830)
T ss_pred c-----CCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH--------------HHccccc
Confidence 7 68999999999999999999999999999999999999999999987776652 1234579
Q ss_pred cCHhhHHhhcCcCCCCC---CCeEEEecCHH-HHH----------Hhh-ccCCCccccc------ChHHHHHHHHhhCCC
Q psy3476 527 ISKASAEQRKGRAGRTG---PGVCYRLYSEE-QYS----------LLA-EYSTPEIRRV------SIDSLLLSLVCMGLG 585 (1417)
Q Consensus 527 ISkasa~QR~GRAGR~g---~G~cy~L~t~~-~~~----------~l~-~~~~pEI~r~------~L~~~lL~lk~lgi~ 585 (1417)
+|..++.||.|||||++ .|++|.+..+. .|+ .+. -...||...+ ..++ +|. +.++.
T Consensus 523 Ls~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~-vLA--~~~v~ 599 (830)
T COG1202 523 LSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEEN-VLA--SAGVT 599 (830)
T ss_pred CCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHH-HHH--Hhhhc
Confidence 99999999999999998 69999886432 111 111 1122322221 2222 222 22222
Q ss_pred CCc----CCCCCCCCCcchhHHHHHHHHhcCCCCCCC---CcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhh
Q psy3476 586 DVR----KFPFLEAPPAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658 (1417)
Q Consensus 586 ~~~----~f~~l~pP~~~~l~~Al~~L~~lGaId~~~---~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~ 658 (1417)
+.. ..+-..--..-..+.++..|++.|+|+.+| ++|+.|++++...+.|..|-.|..++ ....+| +.|++.
T Consensus 600 ~s~~~i~~v~~~~~g~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v-~~~~~p-l~i~~~ 677 (830)
T COG1202 600 NSLSVIERVNSLMLGAAFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIREGV-LASMDP-LRIAAE 677 (830)
T ss_pred CcHHHHhhcChhhccccCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHHHHHhh-hccCCh-HhHhhc
Confidence 111 111000011234678999999999999876 59999999999999999999988875 333344 445555
Q ss_pred c
Q psy3476 659 L 659 (1417)
Q Consensus 659 L 659 (1417)
|
T Consensus 678 l 678 (830)
T COG1202 678 L 678 (830)
T ss_pred c
Confidence 4
No 42
>KOG0920|consensus
Probab=99.97 E-value=2.1e-33 Score=352.12 Aligned_cols=358 Identities=23% Similarity=0.386 Sum_probs=292.7
Q ss_pred hhhhHHHhhhccccccCCCcccccccHHHHhhhhc-CCccchhhcchHHHHHHHHHhcCCCcccC--CCCCCCCccchHH
Q psy3476 795 EEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAE-YSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPAENIES 871 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~-~~~PEI~r~~L~~~vL~lk~~g~~~~~~f--~~l~~P~~~~l~~ 871 (1417)
+|+.+|+||+|||||+++|+|||||++..|+.+.+ +++|||+|++|.++||++|.++.+++..| ..+|||+..++..
T Consensus 517 vSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~ 596 (924)
T KOG0920|consen 517 VSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDL 596 (924)
T ss_pred ccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHH
Confidence 78999999999999999999999999999998777 99999999999999999999999999887 7889999999999
Q ss_pred HHHHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhcccccccCCCCcc
Q psy3476 872 SVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVD 951 (1417)
Q Consensus 872 A~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~~~~~~~~~f~ 951 (1417)
|+..|..+||||+++.||++|+.++.||+||++|||++.|+.|+|+|++++|||+|+..+++..+..+...+++++..|.
T Consensus 597 a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~ 676 (924)
T KOG0920|consen 597 AIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLA 676 (924)
T ss_pred HHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888777766
Q ss_pred CCC-CCccccccccccc----------hhhHHHHhhhhccccchhhhhhh-ccccccCCCcccccccccccccccchhhH
Q psy3476 952 IPL-GKMLVFGSMFHQI----------DTMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQIDT 1019 (1417)
Q Consensus 952 ~~~-gd~lt~l~~~~~~----------~~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1019 (1417)
... ||||+++++|++| ...||.+|||+..+|++-+..+. +...+.+.++-=.+..
T Consensus 677 ~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~------------- 743 (924)
T KOG0920|consen 677 LDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISST------------- 743 (924)
T ss_pred cCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcc-------------
Confidence 555 9999999999999 27899999999999999998888 7755555544221110
Q ss_pred HHHHHHhhhcCccccccccccccccccCCCCccccchhhhcccccccchhHHHHHhhhhccCCchhhHHHHHhhhcccch
Q psy3476 1020 MLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEEAGERLESMD 1099 (1417)
Q Consensus 1020 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~gk~~~~g~~f~~~d~~~~~~~~l~f~~~~~~~~~~~~~~r~~~~~ 1099 (1417)
.+
T Consensus 744 ---------------------------------------------------------------~~--------------- 745 (924)
T KOG0920|consen 744 ---------------------------------------------------------------AA--------------- 745 (924)
T ss_pred ---------------------------------------------------------------cc---------------
Confidence 00
Q ss_pred hhHHHHHhcCChhhHHhhcccccccchHHHHHHHhhhccccchhHHHHHHhhccchhhhHhhhhccccccchhhhccccc
Q psy3476 1100 ANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIA 1179 (1417)
Q Consensus 1100 ~~~~~~~~~~~g~~l~~~~~~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~~~lk~ilmsat~~~~~f~~yf~~~~ 1179 (1417)
T Consensus 746 -------------------------------------------------------------------------------- 745 (924)
T KOG0920|consen 746 -------------------------------------------------------------------------------- 745 (924)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCcchHHHHHHHHHhCCCCcccccCcCCcccccccccccccCCCeEEeCCCCcCCCCCcccccccCCCCCC
Q psy3476 1180 KDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDP 1259 (1417)
Q Consensus 1180 ~~~~~~~~~~~~~~~~l~~~iL~~glyP~~a~~d~~n~~~~~~~~~~~t~~k~~v~lhP~s~~~~~~~~l~~~~~~~~~~ 1259 (1417)
......+.+..+..+++++||+|+|||++..+. ...+.++--|.|++.+.|.+||+|++.+...+
T Consensus 746 --~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~--~~~~~~~~~~~~~~~~~v~i~~~sv~~~~~~~----------- 810 (924)
T KOG0920|consen 746 --LTDSECNHNSQNPELVRAVLCAGLYPNIAFVRR--MEPKSKSVTFVTKADGRVIIHPSSVNEQSTGF----------- 810 (924)
T ss_pred --cCchhhhhcCCCHHHHHHHHhccCCCceeeeec--ccCCcCcceeecCCceeEEEecchhhcccccc-----------
Confidence 000011235788999999999999999999776 33344666778888889999999998876622
Q ss_pred CCCCCCCCCCccccchhHHHHHHHHhccc-hhhhcccccchHHHHhhccceee-ecCCeeEE---EecceEEecccCccc
Q psy3476 1260 PPGLKLPGRNVISSKHQLLVYMSLLETSK-PFLVNCLRMPALQTLLLFSSAIH-TNSDFTRL---VFDSWIEVFVPLQEA 1334 (1417)
Q Consensus 1260 ~~~~~~~~~~~~s~~hq~~~~~~~leT~k-~yl~~~~~~~~~~~lll~~~~i~-~~~~~~~~---~~d~wl~~~~~~~~~ 1334 (1417)
. .+ +++|.++++|++ +|+++|+.+|+++ +|||++.+. +...-.++ +.|+|+.+..+...+
T Consensus 811 ~------------~p--~l~~~~k~~t~~~~~~rd~T~v~~~~-~llfgg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 875 (924)
T KOG0920|consen 811 Q------------SP--FLVFPEKVKSTRLVSLRDTTSVSSSA-LLLFGGGISTVRMKSGSLALLLPDGWLRFKALPKTA 875 (924)
T ss_pred C------------Cc--ceEEeeecccCCcceeeecCCCCcHH-heeecCCceeecCCCCccceecCCceEEeecchhHH
Confidence 1 11 458999999999 9999999999999 888999754 33333333 349999999884443
Q ss_pred ccccchhhhHHHHHHHHHHhhc
Q psy3476 1335 KSTADVNQLEHSLTRDLVQFMS 1356 (1417)
Q Consensus 1335 ~~~~~~~~~~~~l~~~l~~~~~ 1356 (1417)
.....+ ++.|-+-+.+++.
T Consensus 876 ~~~~~L---r~~l~~~l~~~~~ 894 (924)
T KOG0920|consen 876 RLLKEL---RRELDSLLSKKIR 894 (924)
T ss_pred HHHHHH---HHHHHHHHHHhcc
Confidence 332222 3344444444443
No 43
>KOG0333|consensus
Probab=99.97 E-value=1.7e-30 Score=300.12 Aligned_cols=203 Identities=23% Similarity=0.401 Sum_probs=160.6
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCC-------------------------CCcEEEEccCCC--HH-HHHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-------------------------EVKIILMSATIN--IE-LFHT 368 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~-------------------------~~qvIlmSATln--~~-~~~~ 368 (1417)
+++..+||+|||+ |+++.+|...+.+++..++. -.|.+.||||++ ++ ....
T Consensus 394 l~qctyvvldead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ 472 (673)
T KOG0333|consen 394 LNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARS 472 (673)
T ss_pred hccCceEeccchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHH
Confidence 5678899999999 99999999999988876541 168999999995 34 4456
Q ss_pred HhccCceEEEeC--CcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHH
Q psy3476 369 YFNRIAKIIKVP--GRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQ 446 (1417)
Q Consensus 369 ~f~~~~~vi~v~--gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~ 446 (1417)
|| ..+.++++. |++.|.-.........+ ....++.+.+.+. ...++|||+|+++.|+.+|+.|.
T Consensus 473 yl-r~pv~vtig~~gk~~~rveQ~v~m~~ed---------~k~kkL~eil~~~----~~ppiIIFvN~kk~~d~lAk~Le 538 (673)
T KOG0333|consen 473 YL-RRPVVVTIGSAGKPTPRVEQKVEMVSED---------EKRKKLIEILESN----FDPPIIIFVNTKKGADALAKILE 538 (673)
T ss_pred Hh-hCCeEEEeccCCCCccchheEEEEecch---------HHHHHHHHHHHhC----CCCCEEEEEechhhHHHHHHHHh
Confidence 77 556666654 44444321111111110 1133444444432 35689999999999999999998
Q ss_pred hhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceee
Q psy3476 447 EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW 526 (1417)
Q Consensus 447 ~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ 526 (1417)
+ .++.+..|||+-++++|..+++.|++|...|+||||+|++|||||+|.+||| ||....+..|.
T Consensus 539 K-----~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin--------ydmaksieDYt--- 602 (673)
T KOG0333|consen 539 K-----AGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN--------YDMAKSIEDYT--- 602 (673)
T ss_pred h-----ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee--------cchhhhHHHHH---
Confidence 8 6799999999999999999999999999999999999999999999999999 99998877777
Q ss_pred cCHhhHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 527 ISKASAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 527 ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
||+||+||.| .|.++.|+++++-.
T Consensus 603 -------HRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 603 -------HRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred -------HHhccccccccCceeEEEeccchhH
Confidence 9999999999 79999999998844
No 44
>KOG0343|consensus
Probab=99.97 E-value=3.4e-30 Score=298.52 Aligned_cols=317 Identities=18% Similarity=0.209 Sum_probs=242.8
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc----CCC-----cEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA----GFQ-----RIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~----~~~-----~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
.-.-+...|...|..-..++.++-.|.||||||.++.-+++|. .+. -.+|..|+|.+|+|+..-+.+ .|.
T Consensus 88 ~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~k-vgk 166 (758)
T KOG0343|consen 88 KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNK-VGK 166 (758)
T ss_pred CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHH-Hhh
Confidence 3345567888888888889999999999999998866666653 332 256667888888887654322 222
Q ss_pred ccCCeEEEEEeec-----ccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhh
Q psy3476 107 QYSNLVGYQIRFE-----KHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAP 181 (1417)
Q Consensus 107 ~~g~~vGy~ir~e-----~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1417)
.-+-..|..|.+. ...-.+..|++||||.||++|...
T Consensus 167 ~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~-------------------------------------- 208 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDEN-------------------------------------- 208 (758)
T ss_pred ccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhc--------------------------------------
Confidence 2233455555433 233356789999999999987432
Q ss_pred HHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCC
Q psy3476 182 KRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISP 261 (1417)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~ 261 (1417)
|
T Consensus 209 -----------------------------------------~-------------------------------------- 209 (758)
T KOG0343|consen 209 -----------------------------------------P-------------------------------------- 209 (758)
T ss_pred -----------------------------------------C--------------------------------------
Confidence 0
Q ss_pred CCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHH
Q psy3476 262 PLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV 341 (1417)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~l 341 (1417)
. ..-+++.++|+|||| |.++++|...+
T Consensus 210 ~----------------------------------------------------f~t~~lQmLvLDEAD-R~LDMGFk~tL 236 (758)
T KOG0343|consen 210 N----------------------------------------------------FSTSNLQMLVLDEAD-RMLDMGFKKTL 236 (758)
T ss_pred C----------------------------------------------------CCCCcceEEEeccHH-HHHHHhHHHHH
Confidence 0 123467899999999 99999999999
Q ss_pred HHHHhccCCCCcEEEEccCC--CHHHHHHHhccCceEEEeCCc---cccee--EEeccccccccccccCCCCChHHHHHH
Q psy3476 342 IKCLLHSTAEVKIILMSATI--NIELFHTYFNRIAKIIKVPGR---LYPIQ--LEYHPIVELDRTKSEKLDPGPYIRILS 414 (1417)
Q Consensus 342 lk~l~~~r~~~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr---~~pv~--v~~~~~~~~~~~~~~~~~~~~~~~il~ 414 (1417)
-.++..+++..|.++||||- ++.+++..--.++..|.+-.. .+|-. ..|.- .+....+.
T Consensus 237 ~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~--------------v~l~~Ki~ 302 (758)
T KOG0343|consen 237 NAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVI--------------VPLEDKID 302 (758)
T ss_pred HHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEE--------------EehhhHHH
Confidence 99999999999999999999 577888775455655554311 12221 11211 12334556
Q ss_pred HHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccC
Q psy3476 415 IIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494 (1417)
Q Consensus 415 ~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GI 494 (1417)
.+...+.+....++|||++|++++..+++.+.++. +++.+..|||+|++..|..++..|-..+--|++||++++||+
T Consensus 303 ~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlr---pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGL 379 (758)
T KOG0343|consen 303 MLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLR---PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGL 379 (758)
T ss_pred HHHHHHHhccccceEEEEehhhHHHHHHHHHHhcC---CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccC
Confidence 66666655667899999999999999999998754 789999999999999999999999988889999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
|+|.|++||. ||.|.++.+|+ ||+||+.|.. .|.|+.+.++++.+.
T Consensus 380 DFpaVdwViQ--------~DCPedv~tYI----------HRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 380 DFPAVDWVIQ--------VDCPEDVDTYI----------HRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred CCcccceEEE--------ecCchhHHHHH----------HHhhhhhcccCCCceEEEEcchhHHH
Confidence 9999999999 99999888888 9999999998 799999988877554
No 45
>KOG0340|consensus
Probab=99.97 E-value=1.1e-29 Score=282.69 Aligned_cols=317 Identities=20% Similarity=0.228 Sum_probs=232.3
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC----Cc-EEEecchHHHHHHHHHHHHHHHccccCCeEEEEE
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QR-IACTQPRRIACISLSKRVAYETLSQYSNLVGYQI 116 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~----~~-i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~i 116 (1417)
+.|+..+..|.+++++|-+|.||||||+.+..++++... .. -++.-|+|..|.++++++..- |...+..+-..+
T Consensus 32 piQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~al-Gk~l~lK~~viv 110 (442)
T KOG0340|consen 32 PIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIAL-GKLLNLKVSVIV 110 (442)
T ss_pred chHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHh-cccccceEEEEE
Confidence 348999999999999999999999999999988887543 21 456678999999999988653 444555555545
Q ss_pred eeccc------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccc
Q psy3476 117 RFEKH------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKAD 190 (1417)
Q Consensus 117 r~e~~------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 190 (1417)
.+.+. .+++..++++|+|.+-..+.++.
T Consensus 111 GG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~---------------------------------------------- 144 (442)
T KOG0340|consen 111 GGTDMIMQAAILSDRPHVVVATPGRLADHLSSNL---------------------------------------------- 144 (442)
T ss_pred ccHHHhhhhhhcccCCCeEecCccccccccccCC----------------------------------------------
Confidence 55443 34567788888887776654430
Q ss_pred cchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccc
Q psy3476 191 NAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIV 270 (1417)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~ 270 (1417)
| .
T Consensus 145 --------------------------------------------------------------~----~------------ 146 (442)
T KOG0340|consen 145 --------------------------------------------------------------G----V------------ 146 (442)
T ss_pred --------------------------------------------------------------c----c------------
Confidence 0 0
Q ss_pred cccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCC
Q psy3476 271 AADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA 350 (1417)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~ 350 (1417)
....+.++.++|+|||| |.+.++|-..+.-+....+.
T Consensus 147 ------------------------------------------~~~~~~rlkflVlDEAD-rvL~~~f~d~L~~i~e~lP~ 183 (442)
T KOG0340|consen 147 ------------------------------------------CSWIFQRLKFLVLDEAD-RVLAGCFPDILEGIEECLPK 183 (442)
T ss_pred ------------------------------------------chhhhhceeeEEecchh-hhhccchhhHHhhhhccCCC
Confidence 00346788999999999 99999998888888888888
Q ss_pred CCcEEEEccCCCHHHHHHHhcc--C---ceEEEe-CCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCC
Q psy3476 351 EVKIILMSATINIELFHTYFNR--I---AKIIKV-PGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424 (1417)
Q Consensus 351 ~~qvIlmSATln~~~~~~~f~~--~---~~vi~v-~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 424 (1417)
..|..++|||++. .+...++- . +..... ++-..+-.+...........+ -.-.+..+ ..+...+
T Consensus 184 ~RQtLlfSATitd-~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk--------daYLv~~L-r~~~~~~ 253 (442)
T KOG0340|consen 184 PRQTLLFSATITD-TIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK--------DAYLVHLL-RDFENKE 253 (442)
T ss_pred ccceEEEEeehhh-HHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh--------HHHHHHHH-hhhhhcc
Confidence 8899999999952 23333311 0 111111 111111111000000000000 01122222 3343346
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEc
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVD 504 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VId 504 (1417)
.+.++||+++..+++.++..|+. -++.+..+||.|++.+|...+.+|+++..+||||||+|++|+|||.|..|||
T Consensus 254 ~~simIFvnttr~cQ~l~~~l~~-----le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN 328 (442)
T KOG0340|consen 254 NGSIMIFVNTTRECQLLSMTLKN-----LEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN 328 (442)
T ss_pred CceEEEEeehhHHHHHHHHHHhh-----hceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe
Confidence 89999999999999999999987 5789999999999999999999999999999999999999999999999999
Q ss_pred CCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 505 SGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 505 sG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
||.|.....|+ ||+||+.|.| .|.++.++++.+.+.+
T Consensus 329 --------~diPr~P~~yi----------HRvGRtARAGR~G~aiSivt~rDv~l~ 366 (442)
T KOG0340|consen 329 --------HDIPRDPKDYI----------HRVGRTARAGRKGMAISIVTQRDVELL 366 (442)
T ss_pred --------cCCCCCHHHHH----------HhhcchhcccCCcceEEEechhhHHHH
Confidence 99999888888 9999999999 6999999998776543
No 46
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=3.4e-29 Score=321.11 Aligned_cols=215 Identities=19% Similarity=0.169 Sum_probs=142.2
Q ss_pred CCCCccEEEEecCcccccCcchHH---HHHHHHhc----cCCCCcEEEEccCC-CHHHHHHHhccCc-eEEEeCCcccc-
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLL---GVIKCLLH----STAEVKIILMSATI-NIELFHTYFNRIA-KIIKVPGRLYP- 385 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll---~llk~l~~----~r~~~qvIlmSATl-n~~~~~~~f~~~~-~vi~v~gr~~p- 385 (1417)
.++++++|||||+|. .. +.|.. .+++++.+ ...+.|+|++|||+ |...+.+++.+.. .++..++.+.+
T Consensus 154 ~l~~l~~vViDEah~-~~-g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~ 231 (742)
T TIGR03817 154 FLRRLRYVVIDECHS-YR-GVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGA 231 (742)
T ss_pred HHhcCCEEEEeChhh-cc-CccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCc
Confidence 367899999999993 32 22332 23333322 24578999999999 5555665553322 22222222222
Q ss_pred eeEEe-cccccc-ccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc---cCCcEEEEe
Q psy3476 386 IQLEY-HPIVEL-DRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK---SQGWIVLPL 460 (1417)
Q Consensus 386 v~v~~-~~~~~~-~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~---~~~~~V~~L 460 (1417)
....+ .+.... ...................+...+. .+.++||||+|++.++.++..+++.... ..+..+..+
T Consensus 232 ~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~ 309 (742)
T TIGR03817 232 RTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAY 309 (742)
T ss_pred eEEEEecCCccccccccccccccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhe
Confidence 12211 221100 0000000001112223333433332 2578999999999999999998764321 124578899
Q ss_pred cCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCC
Q psy3476 461 HSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540 (1417)
Q Consensus 461 Hs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAG 540 (1417)
||++++++|.++++.|++|+.++|||||++|+|||||++++||+ |+.|.+ .++|+||+||||
T Consensus 310 hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~--------~~~P~s----------~~~y~qRiGRaG 371 (742)
T TIGR03817 310 RAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI--------AGFPGT----------RASLWQQAGRAG 371 (742)
T ss_pred ecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE--------eCCCCC----------HHHHHHhccccC
Confidence 99999999999999999999999999999999999999999999 777764 455669999999
Q ss_pred CCC-CCeEEEecC
Q psy3476 541 RTG-PGVCYRLYS 552 (1417)
Q Consensus 541 R~g-~G~cy~L~t 552 (1417)
|.| .|.++.+.+
T Consensus 372 R~G~~g~ai~v~~ 384 (742)
T TIGR03817 372 RRGQGALVVLVAR 384 (742)
T ss_pred CCCCCcEEEEEeC
Confidence 999 699998886
No 47
>KOG0338|consensus
Probab=99.97 E-value=1.2e-29 Score=291.88 Aligned_cols=310 Identities=22% Similarity=0.269 Sum_probs=228.7
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC--------CcEEEecchHHHHHHHHH---HHHHHHccccCC
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF--------QRIACTQPRRIACISLSK---RVAYETLSQYSN 110 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~--------~~i~~tqPrr~aa~~~a~---rva~e~~~~~g~ 110 (1417)
+.|...+..-.-++.++-||.||||||..+..+++|.-. .|++|..|+|.+|+|+.. ++|.... -
T Consensus 206 pIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~----I 281 (691)
T KOG0338|consen 206 PIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTD----I 281 (691)
T ss_pred chhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhcc----c
Confidence 347777777778899999999999999999999988532 479999999999998764 4444433 4
Q ss_pred eEEEEEeecc------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHh
Q psy3476 111 LVGYQIRFEK------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRR 184 (1417)
Q Consensus 111 ~vGy~ir~e~------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (1417)
.||..|.+-+ .......|+++|||.|.+++.+.
T Consensus 282 ~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs----------------------------------------- 320 (691)
T KOG0338|consen 282 TVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNS----------------------------------------- 320 (691)
T ss_pred eeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccC-----------------------------------------
Confidence 5555554322 23456889999999988776442
Q ss_pred hhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCc
Q psy3476 185 KMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264 (1417)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~ 264 (1417)
|+
T Consensus 321 --------------------------------------~s---------------------------------------- 322 (691)
T KOG0338|consen 321 --------------------------------------PS---------------------------------------- 322 (691)
T ss_pred --------------------------------------CC----------------------------------------
Confidence 10
Q ss_pred CCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHH
Q psy3476 265 CGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKC 344 (1417)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~ 344 (1417)
..++++.++|+|||| |+++.+|...+-.+
T Consensus 323 --------------------------------------------------f~ldsiEVLvlDEAD-RMLeegFademnEi 351 (691)
T KOG0338|consen 323 --------------------------------------------------FNLDSIEVLVLDEAD-RMLEEGFADEMNEI 351 (691)
T ss_pred --------------------------------------------------ccccceeEEEechHH-HHHHHHHHHHHHHH
Confidence 357788999999999 99999999998888
Q ss_pred HhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeC-Ccccce--eEEeccccccccccccCCCCChHHHHHHHHHhh
Q psy3476 345 LLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVP-GRLYPI--QLEYHPIVELDRTKSEKLDPGPYIRILSIIDKK 419 (1417)
Q Consensus 345 l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~-gr~~pv--~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 419 (1417)
+...+.+.|.++|||||+ ++++.+.--+.+.-|.++ ....+. ...|...-. ..+ .+. ..-+...+.+.
T Consensus 352 i~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~----~re-~dR--ea~l~~l~~rt 424 (691)
T KOG0338|consen 352 IRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRP----KRE-GDR--EAMLASLITRT 424 (691)
T ss_pred HHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheecc----ccc-ccc--HHHHHHHHHHh
Confidence 888889999999999995 556655432322222222 111111 111111000 000 001 11123333333
Q ss_pred CCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCe
Q psy3476 420 YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGI 499 (1417)
Q Consensus 420 ~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V 499 (1417)
+ ...++||+.|++.+..+.-.+-- .++.+.-+||.|++++|...++.|+++++.|||||++|++|+||++|
T Consensus 425 f----~~~~ivFv~tKk~AHRl~IllGL-----lgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 425 F----QDRTIVFVRTKKQAHRLRILLGL-----LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred c----ccceEEEEehHHHHHHHHHHHHH-----hhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 3 46799999999999988666543 57889999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 500 RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
..||| |+.|..+..|+ ||+||+.|.| .|..+.|..+++-..+
T Consensus 496 ~tVIN--------y~mP~t~e~Y~----------HRVGRTARAGRaGrsVtlvgE~dRkll 538 (691)
T KOG0338|consen 496 QTVIN--------YAMPKTIEHYL----------HRVGRTARAGRAGRSVTLVGESDRKLL 538 (691)
T ss_pred eEEEe--------ccCchhHHHHH----------HHhhhhhhcccCcceEEEeccccHHHH
Confidence 99999 88887766666 9999999999 7999999998866544
No 48
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1e-28 Score=304.13 Aligned_cols=209 Identities=22% Similarity=0.278 Sum_probs=149.4
Q ss_pred CCCCccEEEEecCcccccCc-chHHHHH--HHHhccCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEE
Q psy3476 316 FLSSYDVLVLDEIHERHLHG-DFLLGVI--KCLLHSTAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLE 389 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~-d~ll~ll--k~l~~~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~ 389 (1417)
...++++|||||||....++ +|...+. ..+....++.+++++|||++.. ++.+++.-..+.+.......| .+.
T Consensus 124 ~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~-nl~ 202 (470)
T TIGR00614 124 ERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRP-NLY 202 (470)
T ss_pred hcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCC-CcE
Confidence 35678999999999543332 4554442 2344455789999999999754 455555322222222211111 111
Q ss_pred eccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHH
Q psy3476 390 YHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQ 469 (1417)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR 469 (1417)
|..... .......+...+.+. .++..+||||+++++++.+++.|.+ .++.+..+||+|++++|
T Consensus 203 ~~v~~~---------~~~~~~~l~~~l~~~---~~~~~~IIF~~s~~~~e~la~~L~~-----~g~~~~~~H~~l~~~eR 265 (470)
T TIGR00614 203 YEVRRK---------TPKILEDLLRFIRKE---FKGKSGIIYCPSRKKSEQVTASLQN-----LGIAAGAYHAGLEISAR 265 (470)
T ss_pred EEEEeC---------CccHHHHHHHHHHHh---cCCCceEEEECcHHHHHHHHHHHHh-----cCCCeeEeeCCCCHHHH
Confidence 111000 011233444444432 2345679999999999999999987 57889999999999999
Q ss_pred HHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEE
Q psy3476 470 DRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCY 548 (1417)
Q Consensus 470 ~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy 548 (1417)
..+++.|++|+.+|||||+++++|||+|+|++||+ |+.|.+... |.||+|||||.| +|.|+
T Consensus 266 ~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~--------~~~P~s~~~----------y~Qr~GRaGR~G~~~~~~ 327 (470)
T TIGR00614 266 DDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH--------YSLPKSMES----------YYQESGRAGRDGLPSECH 327 (470)
T ss_pred HHHHHHHHcCCCcEEEEechhhccCCcccceEEEE--------eCCCCCHHH----------HHhhhcCcCCCCCCceEE
Confidence 99999999999999999999999999999999999 888875544 559999999999 89999
Q ss_pred EecCHHHHHHhh
Q psy3476 549 RLYSEEQYSLLA 560 (1417)
Q Consensus 549 ~L~t~~~~~~l~ 560 (1417)
.+|+..+...+.
T Consensus 328 ~~~~~~d~~~~~ 339 (470)
T TIGR00614 328 LFYAPADINRLR 339 (470)
T ss_pred EEechhHHHHHH
Confidence 999998876544
No 49
>KOG0328|consensus
Probab=99.96 E-value=3.3e-29 Score=271.02 Aligned_cols=207 Identities=19% Similarity=0.304 Sum_probs=165.0
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHH--HHHHHhccCceEEEeCCcccce---eEEec
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIE--LFHTYFNRIAKIIKVPGRLYPI---QLEYH 391 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~--~~~~~f~~~~~vi~v~gr~~pv---~v~~~ 391 (1417)
-..++++|+||+|| +++.+|...+......++++.|++++|||++.+ ...+.|..++.-+.+.....+. +.+|.
T Consensus 167 tr~vkmlVLDEaDe-mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v 245 (400)
T KOG0328|consen 167 TRAVKMLVLDEADE-MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFV 245 (400)
T ss_pred ccceeEEEeccHHH-HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhhee
Confidence 34688999999995 566688899999999999999999999999755 4456665544444443322222 22332
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
....+ ..+...+...|....-.+.+|||||+..++++.+.+++ .++.|..+||+|+++||++
T Consensus 246 ~ve~E-------------ewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~-----~nftVssmHGDm~qkERd~ 307 (400)
T KOG0328|consen 246 AVEKE-------------EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE-----ANFTVSSMHGDMEQKERDK 307 (400)
T ss_pred eechh-------------hhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHh-----hCceeeeccCCcchhHHHH
Confidence 22111 11334444455444456899999999999999999988 6789999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEe
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRL 550 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L 550 (1417)
+...|+.|+-+|+++|++-++|+|+|.|..||| ||.|.+.+.|+ ||+||+||.| .|.++.+
T Consensus 308 im~dFRsg~SrvLitTDVwaRGiDv~qVslviN--------YDLP~nre~YI----------HRIGRSGRFGRkGvainF 369 (400)
T KOG0328|consen 308 IMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN--------YDLPNNRELYI----------HRIGRSGRFGRKGVAINF 369 (400)
T ss_pred HHHHhhcCCceEEEEechhhccCCcceeEEEEe--------cCCCccHHHHh----------hhhccccccCCcceEEEE
Confidence 999999999999999999999999999999999 99998877777 9999999999 7999999
Q ss_pred cCHHHHHHhh
Q psy3476 551 YSEEQYSLLA 560 (1417)
Q Consensus 551 ~t~~~~~~l~ 560 (1417)
+..++...+.
T Consensus 370 Vk~~d~~~lr 379 (400)
T KOG0328|consen 370 VKSDDLRILR 379 (400)
T ss_pred ecHHHHHHHH
Confidence 9999887654
No 50
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.96 E-value=4.3e-28 Score=308.82 Aligned_cols=205 Identities=19% Similarity=0.192 Sum_probs=149.5
Q ss_pred CccEEEEecCcccccCc-chHHHHHH--HHhccCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEEecc
Q psy3476 319 SYDVLVLDEIHERHLHG-DFLLGVIK--CLLHSTAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLEYHP 392 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~-d~ll~llk--~l~~~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~~~~ 392 (1417)
.+++|||||||..+-++ +|...+.. .+....++.+++++|||++.. ++.+.++...+++...+...| .+.|..
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~V 659 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYSV 659 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEEE
Confidence 47889999999554444 57666543 344556788999999999643 455555322222222211111 222221
Q ss_pred ccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHH
Q psy3476 393 IVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRV 472 (1417)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v 472 (1417)
.... ......+...+... ..++..||||+++++++.+++.|.. .++.+.++||+|++++|..+
T Consensus 660 v~k~---------kk~le~L~~~I~~~---~~~esgIIYC~SRke~E~LAe~L~~-----~Gika~~YHAGLs~eeR~~v 722 (1195)
T PLN03137 660 VPKT---------KKCLEDIDKFIKEN---HFDECGIIYCLSRMDCEKVAERLQE-----FGHKAAFYHGSMDPAQRAFV 722 (1195)
T ss_pred eccc---------hhHHHHHHHHHHhc---ccCCCceeEeCchhHHHHHHHHHHH-----CCCCeeeeeCCCCHHHHHHH
Confidence 1100 00122333333322 2245789999999999999999987 67899999999999999999
Q ss_pred hccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEec
Q psy3476 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLY 551 (1417)
Q Consensus 473 ~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~ 551 (1417)
++.|..|+.+|||||+++++|||+|+|++||+ ||.|.++..|. ||+|||||.| +|.|+.+|
T Consensus 723 qe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH--------ydlPkSiEsYy----------QriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 723 QKQWSKDEINIICATVAFGMGINKPDVRFVIH--------HSLPKSIEGYH----------QECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHHHhcCCCcEEEEechhhcCCCccCCcEEEE--------cCCCCCHHHHH----------hhhcccCCCCCCceEEEEe
Confidence 99999999999999999999999999999999 99888776666 9999999999 89999999
Q ss_pred CHHHHHHh
Q psy3476 552 SEEQYSLL 559 (1417)
Q Consensus 552 t~~~~~~l 559 (1417)
+..++..+
T Consensus 785 s~~D~~~~ 792 (1195)
T PLN03137 785 SYSDYIRV 792 (1195)
T ss_pred cHHHHHHH
Confidence 98887543
No 51
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.96 E-value=3.9e-28 Score=306.95 Aligned_cols=205 Identities=19% Similarity=0.265 Sum_probs=148.9
Q ss_pred CCccEEEEecCcccccCc-chHHHH--HHHHhccCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEEec
Q psy3476 318 SSYDVLVLDEIHERHLHG-DFLLGV--IKCLLHSTAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLEYH 391 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~-d~ll~l--lk~l~~~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~~~ 391 (1417)
.++++|||||||..+.++ +|...+ +..+....++.+++++|||++.. .+.+.+.-..+.+.+.....| .+.|.
T Consensus 138 ~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~ 216 (607)
T PRK11057 138 WNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYT 216 (607)
T ss_pred CCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceee
Confidence 368999999999554433 354433 33344456789999999999644 344444323344433321111 11111
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
-.. .......++..+. ...++++||||+++++++.+++.|.+ .++.+..+||+|++++|.+
T Consensus 217 v~~----------~~~~~~~l~~~l~----~~~~~~~IIFc~tr~~~e~la~~L~~-----~g~~v~~~Ha~l~~~~R~~ 277 (607)
T PRK11057 217 LVE----------KFKPLDQLMRYVQ----EQRGKSGIIYCNSRAKVEDTAARLQS-----RGISAAAYHAGLDNDVRAD 277 (607)
T ss_pred eee----------ccchHHHHHHHHH----hcCCCCEEEEECcHHHHHHHHHHHHh-----CCCCEEEecCCCCHHHHHH
Confidence 000 0112233333332 23467899999999999999999987 6788999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEe
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRL 550 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L 550 (1417)
+++.|+.|..+|||||+++++|||+|+|++||+ ||.|.+. .+|.||+|||||.| +|.|+.+
T Consensus 278 i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~--------~d~P~s~----------~~y~Qr~GRaGR~G~~~~~ill 339 (607)
T PRK11057 278 VQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FDIPRNI----------ESYYQETGRAGRDGLPAEAMLF 339 (607)
T ss_pred HHHHHHCCCCCEEEEechhhccCCCCCcCEEEE--------eCCCCCH----------HHHHHHhhhccCCCCCceEEEE
Confidence 999999999999999999999999999999999 8887654 45559999999999 7999999
Q ss_pred cCHHHHHHhh
Q psy3476 551 YSEEQYSLLA 560 (1417)
Q Consensus 551 ~t~~~~~~l~ 560 (1417)
|+..+...+.
T Consensus 340 ~~~~d~~~~~ 349 (607)
T PRK11057 340 YDPADMAWLR 349 (607)
T ss_pred eCHHHHHHHH
Confidence 9998876544
No 52
>KOG0952|consensus
Probab=99.96 E-value=3.1e-28 Score=299.44 Aligned_cols=369 Identities=18% Similarity=0.207 Sum_probs=247.2
Q ss_pred cccchhhhhhccccccccccc-cCCCCccEEEEecCc-ccccCcchHHHHHHHHhc----cCCCCcEEEEccCC-CHHHH
Q psy3476 294 GDFLLGVIKCLLHSTVEVAAD-NFLSSYDVLVLDEIH-ERHLHGDFLLGVIKCLLH----STAEVKIILMSATI-NIELF 366 (1417)
Q Consensus 294 ~d~~lgt~~~L~~~~~~~~~d-~~L~~~~~VIlDEaH-ER~l~~d~ll~llk~l~~----~r~~~qvIlmSATl-n~~~~ 366 (1417)
.+++|.||++|+..++....| .+++.+++|||||+| -...++..++.++.+..+ .-..+++|++|||+ |.+++
T Consensus 212 tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDv 291 (1230)
T KOG0952|consen 212 TQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDV 291 (1230)
T ss_pred cCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHH
Confidence 467888999999877777554 467899999999999 112233455666555542 34678999999999 89999
Q ss_pred HHHhccC--ceEEEeCC--cccceeEEecccccc-ccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHH
Q psy3476 367 HTYFNRI--AKIIKVPG--RLYPIQLEYHPIVEL-DRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSI 441 (1417)
Q Consensus 367 ~~~f~~~--~~vi~v~g--r~~pv~v~~~~~~~~-~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~l 441 (1417)
+.|++-+ +.++...+ |+.|++..+.-.... .......++...+.++.+.+ .++.+++|||+++++..+.
T Consensus 292 A~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~------~~g~qVlvFvhsR~~Ti~t 365 (1230)
T KOG0952|consen 292 ARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL------QEGHQVLVFVHSRNETIRT 365 (1230)
T ss_pred HHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH------HcCCeEEEEEecChHHHHH
Confidence 9999654 45555555 455555444332222 11112223333344455444 3467999999999999999
Q ss_pred HHHHHhhhhc---------cC---------CcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 442 VRAAQEYNEK---------SQ---------GWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 442 a~~L~~~~~~---------~~---------~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
|+.|.+.... .+ ...+..+|+||..++|..+++.|..|.++|++||.++++|||+|+-.++|
T Consensus 366 A~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViI 445 (1230)
T KOG0952|consen 366 AKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVII 445 (1230)
T ss_pred HHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEe
Confidence 9998764321 01 13466789999999999999999999999999999999999999988888
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHHH------------------hhcc
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYSL------------------LAEY 562 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~~------------------l~~~ 562 (1417)
- .+..||...+. + .-.+.....|..|||||++ .|..+.+-+.+..+. +.+.
T Consensus 446 K----GT~~ydsskg~--f--~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dn 517 (1230)
T KOG0952|consen 446 K----GTQVYDSSKGS--F--VDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDN 517 (1230)
T ss_pred c----CCcccccccCc--e--eeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHh
Confidence 5 56789987752 1 2345678889999999998 588876666554332 2233
Q ss_pred CCCcccccChHHHHHHHHhhCCC--------CCcCC----CCCCC-CCc-----chhHHHHHHHHhcCCCCCC-----CC
Q psy3476 563 STPEIRRVSIDSLLLSLVCMGLG--------DVRKF----PFLEA-PPA-----ENIESSVRSLTQHGAIDSK-----ER 619 (1417)
Q Consensus 563 ~~pEI~r~~L~~~lL~lk~lgi~--------~~~~f----~~l~p-P~~-----~~l~~Al~~L~~lGaId~~-----~~ 619 (1417)
...||-...+.++--.+..++.. |+..+ ..+.+ |.. +.+..++..|.+...|--+ -+
T Consensus 518 LnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~ 597 (1230)
T KOG0952|consen 518 LNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLK 597 (1230)
T ss_pred hhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEc
Confidence 34444433222222223333211 11111 11222 222 2455677777777555322 25
Q ss_pred cChhhhhccCCCCChhhHHHHHhhhc-cCChhhHHHHhhhccCCCccccCCCCChhHHHHH
Q psy3476 620 VTSLGRFLSDLPVDIPLGKMLVFGSM-FHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETAR 679 (1417)
Q Consensus 620 lT~LG~~ls~lpldp~lak~Ll~~~~-f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r 679 (1417)
.|++||.++.+++.....+.++.... |--.+. |.+++|..++|.....++++.++.+
T Consensus 598 stdlGR~aS~yYik~ETme~~nn~~k~~~se~~---iL~lis~aeEfs~ik~R~eE~k~l~ 655 (1230)
T KOG0952|consen 598 STDLGRVASNYYIKYETMETFNNLPKSFYSEDD---ILALISMAEEFSQIKVREEEKKELK 655 (1230)
T ss_pred ccchhhhhhhhhhhhHHHHHHHhcccccCCHHH---HHHHHHhhHhhhhhhhhhhhHHHHH
Confidence 89999999999999999999998876 444444 5677777888988777776665554
No 53
>KOG0332|consensus
Probab=99.96 E-value=1.6e-28 Score=274.69 Aligned_cols=322 Identities=23% Similarity=0.276 Sum_probs=243.2
Q ss_pred hhhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----CCCcEEEecchHHHHHHHH
Q psy3476 23 EKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLS 97 (1417)
Q Consensus 23 ~~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----~~~~i~~tqPrr~aa~~~a 97 (1417)
-+|.+..+||+ ..||+-- ..-.++.|.++..|+|||+++..-++.. .....+|..|+|..|.+.-
T Consensus 108 M~F~kPskIQe--~aLPlll--------~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~ 177 (477)
T KOG0332|consen 108 MKFQKPSKIQE--TALPLLL--------AEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTG 177 (477)
T ss_pred hccCCcchHHH--hhcchhh--------cCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHH
Confidence 56777777776 4555521 1235689999999999999887766643 2357889999999999987
Q ss_pred HHHHHHHccccCCeEEEEEeecccccC---CccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHh
Q psy3476 98 KRVAYETLSQYSNLVGYQIRFEKHRRE---KTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKR 174 (1417)
Q Consensus 98 ~rva~e~~~~~g~~vGy~ir~e~~~~~---~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1417)
+ |..++|...+-++.|.+|....... ...|++.|+|.+++.+.. +|
T Consensus 178 e-Vv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~k-----------------------------lk- 226 (477)
T KOG0332|consen 178 E-VVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLK-----------------------------LK- 226 (477)
T ss_pred H-HHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHH-----------------------------HH-
Confidence 6 6678888777788899987632221 347999999998876532 11
Q ss_pred hhhhhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccc
Q psy3476 175 KKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDF 254 (1417)
Q Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~ 254 (1417)
T Consensus 227 -------------------------------------------------------------------------------- 226 (477)
T KOG0332|consen 227 -------------------------------------------------------------------------------- 226 (477)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccC
Q psy3476 255 LLGVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLH 334 (1417)
Q Consensus 255 l~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~ 334 (1417)
| ..+..++++|+|||+...-.
T Consensus 227 ----------~-------------------------------------------------id~~kikvfVlDEAD~Mi~t 247 (477)
T KOG0332|consen 227 ----------C-------------------------------------------------IDLEKIKVFVLDEADVMIDT 247 (477)
T ss_pred ----------h-------------------------------------------------hChhhceEEEecchhhhhhc
Confidence 0 23556889999999943333
Q ss_pred cchHHHHHHHHhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCcc---cceeEEeccccccccccccCCCCChH
Q psy3476 335 GDFLLGVIKCLLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRL---YPIQLEYHPIVELDRTKSEKLDPGPY 409 (1417)
Q Consensus 335 ~d~ll~llk~l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~---~pv~v~~~~~~~~~~~~~~~~~~~~~ 409 (1417)
.+|...-.++....+++.|++++|||.+ +..|+.-+-.++.++.+..+. .++...|..-...
T Consensus 248 qG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~------------- 314 (477)
T KOG0332|consen 248 QGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACR------------- 314 (477)
T ss_pred ccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccch-------------
Confidence 3566666666666778999999999994 556666665667777665543 3444444322221
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
....+.|.+.|....-|+.+|||.|++.+.+++..+.. .+..|..+||.|..++|..+.+.|+.|+-||+|+||+
T Consensus 315 ~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~-----~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV 389 (477)
T KOG0332|consen 315 DDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRA-----EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNV 389 (477)
T ss_pred hhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHh-----cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEech
Confidence 22344555555445568999999999999999999987 7899999999999999999999999999999999999
Q ss_pred hhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHH
Q psy3476 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEE 554 (1417)
Q Consensus 490 ae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~ 554 (1417)
.+||||++.|.+||| ||.|.....- -....|.||+||+||.| .|.++.|+...
T Consensus 390 ~ARGiDv~qVs~VvN--------ydlP~~~~~~----pD~etYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 390 CARGIDVAQVSVVVN--------YDLPVKYTGE----PDYETYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred hhcccccceEEEEEe--------cCCccccCCC----CCHHHHHHHhcccccccccceEEEeeccc
Confidence 999999999999999 9998764432 36678889999999999 79999988544
No 54
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=3.2e-27 Score=308.46 Aligned_cols=211 Identities=22% Similarity=0.158 Sum_probs=142.2
Q ss_pred CCCCccEEEEecCcccccCc---chHHHHHHHHhccC-CCCcEEEEccCC-CHHHHHHHhccC------ceEEEeCC---
Q psy3476 316 FLSSYDVLVLDEIHERHLHG---DFLLGVIKCLLHST-AEVKIILMSATI-NIELFHTYFNRI------AKIIKVPG--- 381 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~---d~ll~llk~l~~~r-~~~qvIlmSATl-n~~~~~~~f~~~------~~vi~v~g--- 381 (1417)
.+.++++||+||+|+ ..+. ..+...+.++.... ++.|+|++|||+ |.+.+++|+... .++..+..
T Consensus 169 ~l~~l~~VVIDE~H~-l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~ 247 (876)
T PRK13767 169 KLRTVKWVIVDEIHS-LAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFV 247 (876)
T ss_pred HHhcCCEEEEechhh-hccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCC
Confidence 577899999999993 3322 23334444444433 678999999999 678889988531 11111111
Q ss_pred cccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc-cCCcEEEEe
Q psy3476 382 RLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK-SQGWIVLPL 460 (1417)
Q Consensus 382 r~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~-~~~~~V~~L 460 (1417)
+.+++.+.. +...... .........+...+.+.+. ..+++||||||++.++.++..|.+.... ..+..+..+
T Consensus 248 k~~~i~v~~-p~~~l~~----~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~h 320 (876)
T PRK13767 248 KPFDIKVIS-PVDDLIH----TPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAH 320 (876)
T ss_pred ccceEEEec-cCccccc----cccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeee
Confidence 111221111 1100000 0000111233344444332 3578999999999999999999864321 124679999
Q ss_pred cCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCC
Q psy3476 461 HSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540 (1417)
Q Consensus 461 Hs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAG 540 (1417)
||+|++++|..+++.|++|..+|||||+++++|||||+|++||+ |+.|.+ .++|.||+||||
T Consensus 321 Hg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~--------~~~P~s----------v~~ylQRiGRaG 382 (876)
T PRK13767 321 HSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL--------LGSPKS----------VSRLLQRIGRAG 382 (876)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE--------eCCCCC----------HHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999 877764 455669999999
Q ss_pred CCC----CCeEEEecC
Q psy3476 541 RTG----PGVCYRLYS 552 (1417)
Q Consensus 541 R~g----~G~cy~L~t 552 (1417)
|.+ .|.++....
T Consensus 383 R~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 383 HRLGEVSKGRIIVVDR 398 (876)
T ss_pred CCCCCCCcEEEEEcCc
Confidence 873 477776543
No 55
>KOG0335|consensus
Probab=99.96 E-value=1.7e-28 Score=288.87 Aligned_cols=307 Identities=20% Similarity=0.260 Sum_probs=225.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH----cC-----------CCcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ----AG-----------FQRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile----~~-----------~~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
.+|+-.+..+.+++..+++|+||||||..+..++++ .+ +.++++..|+|.+|.|+..+..+-...
T Consensus 99 pvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~ 178 (482)
T KOG0335|consen 99 PVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYL 178 (482)
T ss_pred cceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccc
Confidence 457778899999999999999999999876655543 32 357999999999999998876654432
Q ss_pred c-cCCeEEEEEee----cccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhh
Q psy3476 107 Q-YSNLVGYQIRF----EKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAP 181 (1417)
Q Consensus 107 ~-~g~~vGy~ir~----e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1417)
. +-..++|.-+- .......+.|+++|+|.|...+.+.
T Consensus 179 s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g-------------------------------------- 220 (482)
T KOG0335|consen 179 SGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG-------------------------------------- 220 (482)
T ss_pred ccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc--------------------------------------
Confidence 1 11222332210 0112356889999999988765433
Q ss_pred HHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCC
Q psy3476 182 KRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISP 261 (1417)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~ 261 (1417)
T Consensus 221 -------------------------------------------------------------------------------- 220 (482)
T KOG0335|consen 221 -------------------------------------------------------------------------------- 220 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccC-cchHHH
Q psy3476 262 PLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLH-GDFLLG 340 (1417)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~-~d~ll~ 340 (1417)
.-.|++++++|||||| |+++ .+|...
T Consensus 221 ----------------------------------------------------~i~l~~~k~~vLDEAD-rMlD~mgF~p~ 247 (482)
T KOG0335|consen 221 ----------------------------------------------------KISLDNCKFLVLDEAD-RMLDEMGFEPQ 247 (482)
T ss_pred ----------------------------------------------------eeehhhCcEEEecchH-Hhhhhcccccc
Confidence 0236678899999999 8888 899999
Q ss_pred HHHHHhccC----CCCcEEEEccCCC--HHHHHHHhccC-ceEEEeC--Ccccc-eeEEeccccccccccccCCCCChHH
Q psy3476 341 VIKCLLHST----AEVKIILMSATIN--IELFHTYFNRI-AKIIKVP--GRLYP-IQLEYHPIVELDRTKSEKLDPGPYI 410 (1417)
Q Consensus 341 llk~l~~~r----~~~qvIlmSATln--~~~~~~~f~~~-~~vi~v~--gr~~p-v~v~~~~~~~~~~~~~~~~~~~~~~ 410 (1417)
+-+++.... ...|.++||||.+ .+.+..+|..+ ...+.+. |+.-. +....... ... ....
T Consensus 248 Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V-~~~---------~kr~ 317 (482)
T KOG0335|consen 248 IRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFV-NEM---------EKRS 317 (482)
T ss_pred HHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeee-cch---------hhHH
Confidence 988887653 3789999999995 44566666432 3223221 22111 11111111 000 1122
Q ss_pred HHHHHHHhhCCCCCCC-----cEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEE
Q psy3476 411 RILSIIDKKYPRTERG-----DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g-----~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLV 485 (1417)
++++.+.........+ .++|||.+++.+..++..|.. .++....+||..++.+|.+.++.|++|+..|+|
T Consensus 318 ~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~-----~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlV 392 (482)
T KOG0335|consen 318 KLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS-----NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLV 392 (482)
T ss_pred HHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc-----CCCCceeecchhhhhHHHHHHHHhhcCCcceEE
Confidence 3444443332111234 799999999999999999987 788999999999999999999999999999999
Q ss_pred ecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecC
Q psy3476 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYS 552 (1417)
Q Consensus 486 ATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t 552 (1417)
||||++||+|||+|++||+ ||.|..+..|+ ||+||+||.| .|.+..|+.
T Consensus 393 aT~VaaRGlDi~~V~hVIn--------yDmP~d~d~Yv----------HRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 393 ATNVAARGLDIPNVKHVIN--------YDMPADIDDYV----------HRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred EehhhhcCCCCCCCceeEE--------eecCcchhhHH----------HhccccccCCCCceeEEEec
Confidence 9999999999999999999 99999988888 9999999999 799999998
No 56
>KOG0336|consensus
Probab=99.96 E-value=3.7e-28 Score=272.93 Aligned_cols=211 Identities=21% Similarity=0.309 Sum_probs=161.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC--HHHHH-HHhccCceEEEeCCcccceeEEec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN--IELFH-TYFNRIAKIIKVPGRLYPIQLEYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln--~~~~~-~~f~~~~~vi~v~gr~~pv~v~~~ 391 (1417)
-.|..+.++|+|||| |+++++|...+.+++...||+.|+++.|||.+ +..++ +|+ .+ |++..-|..--+.+.-.
T Consensus 363 i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~-Ke-p~~v~vGsLdL~a~~sV 439 (629)
T KOG0336|consen 363 INLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYL-KE-PMIVYVGSLDLVAVKSV 439 (629)
T ss_pred eeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhh-hC-ceEEEecccceeeeeee
Confidence 357789999999999 99999999999999999999999999999996 44444 566 33 33333333211111111
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
.....-. -+ .....+++...+.. ....++||||..+..++.+...+.- .++..-.|||+-.+.+|+.
T Consensus 440 kQ~i~v~-----~d-~~k~~~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l-----~gi~~q~lHG~r~Q~DrE~ 506 (629)
T KOG0336|consen 440 KQNIIVT-----TD-SEKLEIVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCL-----KGISSQSLHGNREQSDREM 506 (629)
T ss_pred eeeEEec-----cc-HHHHHHHHHHHHhc--CCCceEEEEEechhhhhhccchhhh-----cccchhhccCChhhhhHHH
Confidence 0000000 00 01112333333333 4467899999999888887766654 6788999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEe
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRL 550 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L 550 (1417)
.++.|+.|+++|||||++|.+|+|+|||++|+| ||.|.+++.|+ ||+||+||+| .|..+.+
T Consensus 507 al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--------yDFP~nIeeYV----------HRvGrtGRaGr~G~sis~ 568 (629)
T KOG0336|consen 507 ALEDFKSGEVRILVATDLASRGLDVPDITHVYN--------YDFPRNIEEYV----------HRVGRTGRAGRTGTSISF 568 (629)
T ss_pred HHHhhhcCceEEEEEechhhcCCCchhcceeec--------cCCCccHHHHH----------HHhcccccCCCCcceEEE
Confidence 999999999999999999999999999999999 99999988888 9999999999 7999999
Q ss_pred cCHHHHHHh
Q psy3476 551 YSEEQYSLL 559 (1417)
Q Consensus 551 ~t~~~~~~l 559 (1417)
++..+....
T Consensus 569 lt~~D~~~a 577 (629)
T KOG0336|consen 569 LTRNDWSMA 577 (629)
T ss_pred EehhhHHHH
Confidence 999887643
No 57
>KOG0326|consensus
Probab=99.95 E-value=2.7e-28 Score=267.45 Aligned_cols=322 Identities=23% Similarity=0.261 Sum_probs=235.3
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCC-----cEEEecchHHHHHHHHHHHHH
Q psy3476 28 LMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ-----RIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 28 ~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~-----~i~~tqPrr~aa~~~a~rva~ 102 (1417)
++.|.+.--.-|. +.|++.+.....+++++..|..|+|||.....+++|.--. ..+|..|+|..|++.++ ++.
T Consensus 97 LmgIfe~G~ekPS-PiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSq-vc~ 174 (459)
T KOG0326|consen 97 LMGIFEKGFEKPS-PIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQ-VCK 174 (459)
T ss_pred HHHHHHhccCCCC-CccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHH-HHH
Confidence 4556555444443 4588888888999999999999999998877777774321 35677788999998865 677
Q ss_pred HHccccCCeEEEEEeecc------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhh
Q psy3476 103 ETLSQYSNLVGYQIRFEK------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKK 176 (1417)
Q Consensus 103 e~~~~~g~~vGy~ir~e~------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1417)
+++...|-.|-....+.+ +..+...++++|||.+++.+...
T Consensus 175 ~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg--------------------------------- 221 (459)
T KOG0326|consen 175 ELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG--------------------------------- 221 (459)
T ss_pred HHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc---------------------------------
Confidence 776665544332222111 12233456666666666543221
Q ss_pred hhhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhcccccccee
Q psy3476 177 AEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLL 256 (1417)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~ 256 (1417)
T Consensus 222 -------------------------------------------------------------------------------- 221 (459)
T KOG0326|consen 222 -------------------------------------------------------------------------------- 221 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcc
Q psy3476 257 GVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGD 336 (1417)
Q Consensus 257 ~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d 336 (1417)
-..+++...+|+|||| ..++.+
T Consensus 222 ---------------------------------------------------------Va~ls~c~~lV~DEAD-KlLs~~ 243 (459)
T KOG0326|consen 222 ---------------------------------------------------------VADLSDCVILVMDEAD-KLLSVD 243 (459)
T ss_pred ---------------------------------------------------------cccchhceEEEechhh-hhhchh
Confidence 1457788999999999 789999
Q ss_pred hHHHHHHHHhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCccc--ceeEEeccccccccccccCCCCChHHHH
Q psy3476 337 FLLGVIKCLLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRLY--PIQLEYHPIVELDRTKSEKLDPGPYIRI 412 (1417)
Q Consensus 337 ~ll~llk~l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~--pv~v~~~~~~~~~~~~~~~~~~~~~~~i 412 (1417)
|...+.+.+..++++.|++++|||.+ +..|.+-+..++-.|..-.... .++.+|....+. .....
T Consensus 244 F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~-----------qKvhC 312 (459)
T KOG0326|consen 244 FQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEER-----------QKVHC 312 (459)
T ss_pred hhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechh-----------hhhhh
Confidence 99999999999999999999999996 4444433324444444333222 233333322111 11122
Q ss_pred HHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhc
Q psy3476 413 LSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492 (1417)
Q Consensus 413 l~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~ 492 (1417)
+..+... ..-.+.+||||+.+.+|.+|+.+.+ -++.++..|+.|.++.|.+||..|++|.-+.+||||.+.+
T Consensus 313 LntLfsk---LqINQsIIFCNS~~rVELLAkKITe-----lGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TR 384 (459)
T KOG0326|consen 313 LNTLFSK---LQINQSIIFCNSTNRVELLAKKITE-----LGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTR 384 (459)
T ss_pred HHHHHHH---hcccceEEEeccchHhHHHHHHHHh-----ccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhc
Confidence 3333322 2346899999999999999999988 6788999999999999999999999999999999999999
Q ss_pred cCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 493 GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
||||++|++||| ||.|...++|. ||+||+||.| .|.++.|++-++...+
T Consensus 385 GIDiqavNvVIN--------FDfpk~aEtYL----------HRIGRsGRFGhlGlAInLityedrf~L 434 (459)
T KOG0326|consen 385 GIDIQAVNVVIN--------FDFPKNAETYL----------HRIGRSGRFGHLGLAINLITYEDRFNL 434 (459)
T ss_pred ccccceeeEEEe--------cCCCCCHHHHH----------HHccCCccCCCcceEEEEEehhhhhhH
Confidence 999999999999 99998777766 9999999999 7999999988776543
No 58
>KOG0348|consensus
Probab=99.95 E-value=1.4e-27 Score=276.41 Aligned_cols=326 Identities=21% Similarity=0.235 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC------CC-----cEEEecchHHHHHHHHHHHHHHHccccC
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG------FQ-----RIACTQPRRIACISLSKRVAYETLSQYS 109 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~------~~-----~i~~tqPrr~aa~~~a~rva~e~~~~~g 109 (1417)
...|++.|..+.+++.++|.++||||||.....+|.+.- .. -.+|..|+|..|.|+.+-+.+-... +-
T Consensus 161 TsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~-~h 239 (708)
T KOG0348|consen 161 TSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKP-FH 239 (708)
T ss_pred chHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcC-ce
Confidence 466888888889999999999999999988666665531 11 2678889999999999866655433 22
Q ss_pred C-eEEEEEeecccccC------CccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhH
Q psy3476 110 N-LVGYQIRFEKHRRE------KTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182 (1417)
Q Consensus 110 ~-~vGy~ir~e~~~~~------~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1417)
= --|+.+.+|++.++ ..+|++.|||.|++++.+-
T Consensus 240 WIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT--------------------------------------- 280 (708)
T KOG0348|consen 240 WIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT--------------------------------------- 280 (708)
T ss_pred EEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc---------------------------------------
Confidence 1 22667788888765 4579999999999887653
Q ss_pred HhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCC
Q psy3476 183 RRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPP 262 (1417)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~ 262 (1417)
T Consensus 281 -------------------------------------------------------------------------------- 280 (708)
T KOG0348|consen 281 -------------------------------------------------------------------------------- 280 (708)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHH
Q psy3476 263 LHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVI 342 (1417)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ll 342 (1417)
....++++.++|+||+| |.++.+|...+-
T Consensus 281 --------------------------------------------------~~i~~s~LRwlVlDEaD-rlleLGfekdit 309 (708)
T KOG0348|consen 281 --------------------------------------------------KSIKFSRLRWLVLDEAD-RLLELGFEKDIT 309 (708)
T ss_pred --------------------------------------------------chheeeeeeEEEecchh-HHHhccchhhHH
Confidence 00235568899999999 888888877665
Q ss_pred HHHhcc-------------CCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCc---cccee----------------E
Q psy3476 343 KCLLHS-------------TAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGR---LYPIQ----------------L 388 (1417)
Q Consensus 343 k~l~~~-------------r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr---~~pv~----------------v 388 (1417)
.++... ++..+-+++|||++ +..+++.--.++..|..+.. ..|-. .
T Consensus 310 ~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~ 389 (708)
T KOG0348|consen 310 QILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDS 389 (708)
T ss_pred HHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCccccccccc
Confidence 544332 23467899999994 56666654345555542211 01100 0
Q ss_pred EeccccccccccccCCCC-ChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc----------------
Q psy3476 389 EYHPIVELDRTKSEKLDP-GPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK---------------- 451 (1417)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~-~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~---------------- 451 (1417)
.-.|........ .+.+ -....+...|.+.....+..+++||+++.+.++--++.+......
T Consensus 390 ~~iPeqL~qry~--vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~ 467 (708)
T KOG0348|consen 390 FAIPEQLLQRYT--VVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPP 467 (708)
T ss_pred ccCcHHhhhceE--ecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChh
Confidence 000100000000 0001 112334445555555555668999999999999988888653211
Q ss_pred -cCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHh
Q psy3476 452 -SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKA 530 (1417)
Q Consensus 452 -~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISka 530 (1417)
..+..++.|||+|++++|..+|+.|.....-|++|||+|+||+|+|+|+.||. ||+|.. .+
T Consensus 468 l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~P~s----------~a 529 (708)
T KOG0348|consen 468 LFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDPPFS----------TA 529 (708)
T ss_pred hhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eCCCCC----------HH
Confidence 13567999999999999999999999999999999999999999999999999 999875 45
Q ss_pred hHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 531 SAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 531 sa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
+|.||+||+.|.| .|.+..+..+.+.+
T Consensus 530 dylHRvGRTARaG~kG~alLfL~P~Eae 557 (708)
T KOG0348|consen 530 DYLHRVGRTARAGEKGEALLFLLPSEAE 557 (708)
T ss_pred HHHHHhhhhhhccCCCceEEEecccHHH
Confidence 5559999999999 68887666554443
No 59
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.95 E-value=8.9e-27 Score=294.82 Aligned_cols=206 Identities=23% Similarity=0.281 Sum_probs=147.3
Q ss_pred CCCccEEEEecCcccccCc-chHHHHHH--HHhccCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEEe
Q psy3476 317 LSSYDVLVLDEIHERHLHG-DFLLGVIK--CLLHSTAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLEY 390 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~-d~ll~llk--~l~~~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~~ 390 (1417)
..++++|||||||..+.++ +|...+.+ .+....++.+++++|||.+.. .+.+++.-..+.+.+..-..| .+.|
T Consensus 125 ~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-nl~~ 203 (591)
T TIGR01389 125 RIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRP-NLRF 203 (591)
T ss_pred cCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCC-CcEE
Confidence 4578999999999554433 45554433 233344566799999999644 455666322222222111011 1111
Q ss_pred ccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHH
Q psy3476 391 HPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD 470 (1417)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~ 470 (1417)
..... ......+.+.+.. ..+++.||||+++++++.+++.|.. .++.+..+||+|+.++|.
T Consensus 204 ~v~~~----------~~~~~~l~~~l~~----~~~~~~IIf~~sr~~~e~la~~L~~-----~g~~~~~~H~~l~~~~R~ 264 (591)
T TIGR01389 204 SVVKK----------NNKQKFLLDYLKK----HRGQSGIIYASSRKKVEELAERLES-----QGISALAYHAGLSNKVRA 264 (591)
T ss_pred EEEeC----------CCHHHHHHHHHHh----cCCCCEEEEECcHHHHHHHHHHHHh-----CCCCEEEEECCCCHHHHH
Confidence 11000 1112334444432 2357899999999999999999976 578899999999999999
Q ss_pred HHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEE
Q psy3476 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYR 549 (1417)
Q Consensus 471 ~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~ 549 (1417)
.+++.|.+|..+|||||+++++|||+|+|++||+ ||.|.+...| .||+|||||.| +|.|+.
T Consensus 265 ~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~--------~~~p~s~~~y----------~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 265 ENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH--------YDMPGNLESY----------YQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred HHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE--------cCCCCCHHHH----------hhhhccccCCCCCceEEE
Confidence 9999999999999999999999999999999999 8887765554 49999999999 899999
Q ss_pred ecCHHHHHHhh
Q psy3476 550 LYSEEQYSLLA 560 (1417)
Q Consensus 550 L~t~~~~~~l~ 560 (1417)
+|+..+...+.
T Consensus 327 ~~~~~d~~~~~ 337 (591)
T TIGR01389 327 LYSPADIALLK 337 (591)
T ss_pred ecCHHHHHHHH
Confidence 99998876533
No 60
>KOG0347|consensus
Probab=99.95 E-value=1.6e-28 Score=284.91 Aligned_cols=112 Identities=20% Similarity=0.356 Sum_probs=104.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
.+|..|||||+.+.+..++-.|.. .++..++||+.|.+.+|.+.++.|++..-.|+||||+|+||+|||+|.+||
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~-----L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVI 536 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNN-----LDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVI 536 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhh-----cCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEE
Confidence 479999999999999999999987 568889999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
+ |..|.....|+ ||.||+.|.+ .|....|+.+.+...
T Consensus 537 H--------YqVPrtseiYV----------HRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 537 H--------YQVPRTSEIYV----------HRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred E--------eecCCccceeE----------ecccccccccCCCeEEEEeChHHhHH
Confidence 9 99999999998 9999999999 799999998877543
No 61
>KOG0339|consensus
Probab=99.95 E-value=6.6e-27 Score=268.86 Aligned_cols=208 Identities=26% Similarity=0.357 Sum_probs=163.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC--HHHHH-HHhccCceEEEeCCcccceeEEec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN--IELFH-TYFNRIAKIIKVPGRLYPIQLEYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln--~~~~~-~~f~~~~~vi~v~gr~~pv~v~~~ 391 (1417)
..+.+++++|+||++ |+.+++|...+-.+..+.+++.|.++||||+. ++.++ +++.+...++..+-..-
T Consensus 366 tn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgea------- 437 (731)
T KOG0339|consen 366 TNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEA------- 437 (731)
T ss_pred ccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhcc-------
Confidence 356789999999999 99999999999999999999999999999994 45554 55544444443321000
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCC-CCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYP-RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD 470 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~ 470 (1417)
..+....-.+-+. -..+++++.+.+. ....|++|||++.+..++.++..|.. .++.+..+||++.+.+|.
T Consensus 438 ---n~dITQ~V~V~~s-~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lkl-----k~~~v~llhgdkdqa~rn 508 (731)
T KOG0339|consen 438 ---NEDITQTVSVCPS-EEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKL-----KGFNVSLLHGDKDQAERN 508 (731)
T ss_pred ---ccchhheeeeccC-cHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcc-----ccceeeeecCchhhHHHH
Confidence 0000000000001 1223444443332 24568999999999999999999876 789999999999999999
Q ss_pred HHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEE
Q psy3476 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYR 549 (1417)
Q Consensus 471 ~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~ 549 (1417)
+++..|+.+...|+|+|+++++|+|||+++-||+ ||....+..+. ||+||+||.| .|+.|.
T Consensus 509 ~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn--------yD~ardIdtht----------hrigrtgRag~kGvayT 570 (731)
T KOG0339|consen 509 EVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN--------YDFARDIDTHT----------HRIGRTGRAGEKGVAYT 570 (731)
T ss_pred HHHHHHhhcCCceEEEeeHhhcCCCccccceeec--------ccccchhHHHH----------HHhhhcccccccceeeE
Confidence 9999999999999999999999999999999999 99999888888 9999999999 799999
Q ss_pred ecCHHHHH
Q psy3476 550 LYSEEQYS 557 (1417)
Q Consensus 550 L~t~~~~~ 557 (1417)
|+|+.+..
T Consensus 571 lvTeKDa~ 578 (731)
T KOG0339|consen 571 LVTEKDAE 578 (731)
T ss_pred EechhhHH
Confidence 99998875
No 62
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=2.1e-28 Score=313.90 Aligned_cols=156 Identities=25% Similarity=0.340 Sum_probs=145.8
Q ss_pred hhhhhHHHhhhccccccCCCcccccccHHHHhhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHHH
Q psy3476 794 IEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 873 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A~ 873 (1417)
-+|++.|.||+|||||++||+||||||+++|..|.+++.|||+|+||++++|++++||++++..|+|+||||..++.+|+
T Consensus 308 ~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~ 387 (819)
T TIGR01970 308 RISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAAR 387 (819)
T ss_pred EECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhcccccccCCCCccCC
Q psy3476 874 RSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIP 953 (1417)
Q Consensus 874 ~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~~~~~~~~~f~~~ 953 (1417)
+.|+.+||||++|+||++|+.|+.||+||++||||+.|+.+||.+++++|||+|+.+++... +
T Consensus 388 ~~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~-----------------~ 450 (819)
T TIGR01970 388 QLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ-----------------G 450 (819)
T ss_pred HHHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC-----------------C
Confidence 99999999999999999999999999999999999999999999999999999998764211 1
Q ss_pred CCCcccccccccc
Q psy3476 954 LGKMLVFGSMFHQ 966 (1417)
Q Consensus 954 ~gd~lt~l~~~~~ 966 (1417)
.+|....+..|+.
T Consensus 451 ~~d~~~~~~~~~~ 463 (819)
T TIGR01970 451 GADLMNRLHRLQQ 463 (819)
T ss_pred cccHHHHHHHHhh
Confidence 4687777777764
No 63
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.95 E-value=5.6e-26 Score=294.25 Aligned_cols=210 Identities=22% Similarity=0.248 Sum_probs=148.9
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhc--c
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN--R 372 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~--~ 372 (1417)
|+++|||..+. .+..+.+++++||||+| | + .......+...+++.++++||||+.+..+...+. .
T Consensus 556 dIVIGTp~ll~-------~~v~f~~L~llVIDEah-r-f----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~ 622 (926)
T TIGR00580 556 DILIGTHKLLQ-------KDVKFKDLGLLIIDEEQ-R-F----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIR 622 (926)
T ss_pred eEEEchHHHhh-------CCCCcccCCEEEeeccc-c-c----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCC
Confidence 45667774331 12457899999999999 3 1 1122334445567889999999987665543322 2
Q ss_pred CceEEEeC-CcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc
Q psy3476 373 IAKIIKVP-GRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK 451 (1417)
Q Consensus 373 ~~~vi~v~-gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~ 451 (1417)
+..++..+ ....|+..++.+.. ...+...+.+.+ ..+++++||||+.++++.+++.|++..
T Consensus 623 d~s~I~~~p~~R~~V~t~v~~~~--------------~~~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~-- 684 (926)
T TIGR00580 623 DLSIIATPPEDRLPVRTFVMEYD--------------PELVREAIRREL--LRGGQVFYVHNRIESIEKLATQLRELV-- 684 (926)
T ss_pred CcEEEecCCCCccceEEEEEecC--------------HHHHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhC--
Confidence 34444433 22235544432210 011222232222 236899999999999999999998743
Q ss_pred cCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhh
Q psy3476 452 SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKAS 531 (1417)
Q Consensus 452 ~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkas 531 (1417)
++..+..+||+|++++|.++++.|++|+.+|||||+++|+|||||++++||. ++.+.. +-++
T Consensus 685 -p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi--------~~a~~~---------gls~ 746 (926)
T TIGR00580 685 -PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII--------ERADKF---------GLAQ 746 (926)
T ss_pred -CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE--------ecCCCC---------CHHH
Confidence 4678999999999999999999999999999999999999999999999997 665431 2235
Q ss_pred HHhhcCcCCCCC-CCeEEEecCH
Q psy3476 532 AEQRKGRAGRTG-PGVCYRLYSE 553 (1417)
Q Consensus 532 a~QR~GRAGR~g-~G~cy~L~t~ 553 (1417)
+.||+||+||.| .|.||.+++.
T Consensus 747 l~Qr~GRvGR~g~~g~aill~~~ 769 (926)
T TIGR00580 747 LYQLRGRVGRSKKKAYAYLLYPH 769 (926)
T ss_pred HHHHhcCCCCCCCCeEEEEEECC
Confidence 669999999999 7999999854
No 64
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.94 E-value=4.3e-26 Score=291.34 Aligned_cols=210 Identities=19% Similarity=0.198 Sum_probs=141.5
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCc
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIA 374 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~ 374 (1417)
++++||+..+.. ...+.++++|||||+| |. ... ....+.......++++||||+.+..++....+..
T Consensus 366 ~IvVgT~~ll~~-------~v~~~~l~lvVIDE~H-rf-g~~----qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~ 432 (681)
T PRK10917 366 DIVIGTHALIQD-------DVEFHNLGLVIIDEQH-RF-GVE----QRLALREKGENPHVLVMTATPIPRTLAMTAYGDL 432 (681)
T ss_pred CEEEchHHHhcc-------cchhcccceEEEechh-hh-hHH----HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCC
Confidence 455666665531 1347889999999999 32 111 1222333344688999999986665443221222
Q ss_pred eEEEe---CCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHH--------HHHHHHH
Q psy3476 375 KIIKV---PGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS--------EISSIVR 443 (1417)
Q Consensus 375 ~vi~v---~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~--------eie~la~ 443 (1417)
.+..+ +....|+...+.... ....+++.+.+.. ..+++++||||..+ .++.+++
T Consensus 433 ~~s~i~~~p~~r~~i~~~~~~~~-------------~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~ 497 (681)
T PRK10917 433 DVSVIDELPPGRKPITTVVIPDS-------------RRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYE 497 (681)
T ss_pred ceEEEecCCCCCCCcEEEEeCcc-------------cHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHH
Confidence 22222 221224443332211 1223344444443 34679999999654 4455666
Q ss_pred HHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccc
Q psy3476 444 AAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQ 523 (1417)
Q Consensus 444 ~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~ 523 (1417)
.|.+.. .++.+..+||+|++++|+.+++.|++|+.+|||||+++|+|||+|++++||+ ||.+..
T Consensus 498 ~L~~~~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~r~----- 561 (681)
T PRK10917 498 ELQEAF---PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI--------ENAERF----- 561 (681)
T ss_pred HHHHHC---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE--------eCCCCC-----
Confidence 666532 3478999999999999999999999999999999999999999999999998 777641
Q ss_pred eeecCHhhHHhhcCcCCCCC-CCeEEEecC
Q psy3476 524 EFWISKASAEQRKGRAGRTG-PGVCYRLYS 552 (1417)
Q Consensus 524 ~~~ISkasa~QR~GRAGR~g-~G~cy~L~t 552 (1417)
+.+++.||+||+||.| +|.||.+++
T Consensus 562 ----gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 562 ----GLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ----CHHHHHHHhhcccCCCCceEEEEEEC
Confidence 2356679999999999 899999985
No 65
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=282.22 Aligned_cols=285 Identities=20% Similarity=0.202 Sum_probs=190.1
Q ss_pred cccchhhhhhccccccccccccCCCCccEEEEecCccccc--CcchHHHHHHHHhccCCCCcEEEEccCC-CHHHHHHHh
Q psy3476 294 GDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHL--HGDFLLGVIKCLLHSTAEVKIILMSATI-NIELFHTYF 370 (1417)
Q Consensus 294 ~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l--~~d~ll~llk~l~~~r~~~qvIlmSATl-n~~~~~~~f 370 (1417)
+|+++.||+.+.-+...-.....|.++.+|||||+|+-.. .+..+...+.++...-++.|.|++|||+ |.+..++|+
T Consensus 124 PdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL 203 (814)
T COG1201 124 PHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFL 203 (814)
T ss_pred CcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHh
Confidence 4566667776553333223346789999999999993221 1122223344555555599999999999 899999999
Q ss_pred ccC---ceEEEeCCcc-cceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHH
Q psy3476 371 NRI---AKIIKVPGRL-YPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQ 446 (1417)
Q Consensus 371 ~~~---~~vi~v~gr~-~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~ 446 (1417)
.+. +.++.+.+.. ..+++.......... ..........|.+... ....+|||+||+..++.++..|+
T Consensus 204 ~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~-------~~~~~~~~~~i~~~v~--~~~ttLIF~NTR~~aE~l~~~L~ 274 (814)
T COG1201 204 VGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD-------EELWAALYERIAELVK--KHRTTLIFTNTRSGAERLAFRLK 274 (814)
T ss_pred cCCCCceEEEEcccCCcceEEEEecCCccccc-------cchhHHHHHHHHHHHh--hcCcEEEEEeChHHHHHHHHHHH
Confidence 753 4677666533 333333222111111 1122233333333332 23489999999999999999998
Q ss_pred hhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceee
Q psy3476 447 EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW 526 (1417)
Q Consensus 447 ~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ 526 (1417)
+.. ...+..+||+++.++|..+++.|++|..|++|||+.+|-||||.+|+.||+ |..|.+.+.+.
T Consensus 275 ~~~----~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq--------~~SP~sV~r~l--- 339 (814)
T COG1201 275 KLG----PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ--------LGSPKSVNRFL--- 339 (814)
T ss_pred Hhc----CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE--------eCCcHHHHHHh---
Confidence 743 267999999999999999999999999999999999999999999999999 88888776666
Q ss_pred cCHhhHHhhcCcCCCCC----CCeEEEecCHHHHHH--------hhccCCCcccccChHHHHHHHHhhCCCCCc------
Q psy3476 527 ISKASAEQRKGRAGRTG----PGVCYRLYSEEQYSL--------LAEYSTPEIRRVSIDSLLLSLVCMGLGDVR------ 588 (1417)
Q Consensus 527 ISkasa~QR~GRAGR~g----~G~cy~L~t~~~~~~--------l~~~~~pEI~r~~L~~~lL~lk~lgi~~~~------ 588 (1417)
||+||+|+.- .|..|.....+-.+. --....+++...+|+-+.-++.++-+....
T Consensus 340 -------QRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y 412 (814)
T COG1201 340 -------QRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAY 412 (814)
T ss_pred -------HhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHH
Confidence 9999999864 365555442222221 113456777777887776666665443311
Q ss_pred -----CCCCCCCCCcchhHHHHHHHHh
Q psy3476 589 -----KFPFLEAPPAENIESSVRSLTQ 610 (1417)
Q Consensus 589 -----~f~~l~pP~~~~l~~Al~~L~~ 610 (1417)
.+||- .-+.+...+.++.|..
T Consensus 413 ~~vrraypy~-~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 413 RVVRRAYPYA-DLSREDFRLVLRYLAG 438 (814)
T ss_pred HHHHhccccc-cCCHHHHHHHHHHHhh
Confidence 12332 2234566777777776
No 66
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.94 E-value=2.2e-25 Score=283.13 Aligned_cols=212 Identities=16% Similarity=0.173 Sum_probs=140.0
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCc
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIA 374 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~ 374 (1417)
++++||+..+.. ...+.++++|||||+|.- .......+.... ......++++||||+....++....+..
T Consensus 340 ~IiVgT~~ll~~-------~~~~~~l~lvVIDEaH~f--g~~qr~~l~~~~-~~~~~~~~l~~SATp~prtl~l~~~~~l 409 (630)
T TIGR00643 340 HLVVGTHALIQE-------KVEFKRLALVIIDEQHRF--GVEQRKKLREKG-QGGFTPHVLVMSATPIPRTLALTVYGDL 409 (630)
T ss_pred CEEEecHHHHhc-------cccccccceEEEechhhc--cHHHHHHHHHhc-ccCCCCCEEEEeCCCCcHHHHHHhcCCc
Confidence 456666665541 134688999999999932 112111222111 1112678999999985554442221221
Q ss_pred --eEEE-eCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHH--------HHHHHHH
Q psy3476 375 --KIIK-VPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS--------EISSIVR 443 (1417)
Q Consensus 375 --~vi~-v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~--------eie~la~ 443 (1417)
..+. .+....|+...+.... ....++..+.+.+ ..+++++|||+..+ .++.+++
T Consensus 410 ~~~~i~~~p~~r~~i~~~~~~~~-------------~~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~ 474 (630)
T TIGR00643 410 DTSIIDELPPGRKPITTVLIKHD-------------EKDIVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYE 474 (630)
T ss_pred ceeeeccCCCCCCceEEEEeCcc-------------hHHHHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHH
Confidence 1221 2222234444332211 1123344444333 23678999999764 4556666
Q ss_pred HHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccc
Q psy3476 444 AAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQ 523 (1417)
Q Consensus 444 ~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~ 523 (1417)
.|.+.. .++.+..+||+|++++|..+++.|++|+.+|||||+++|+|||+|++++||. ||.+..
T Consensus 475 ~L~~~~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi--------~~~~r~----- 538 (630)
T TIGR00643 475 RLKKAF---PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI--------EDAERF----- 538 (630)
T ss_pred HHHhhC---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE--------eCCCcC-----
Confidence 665432 5678999999999999999999999999999999999999999999999998 776641
Q ss_pred eeecCHhhHHhhcCcCCCCC-CCeEEEec
Q psy3476 524 EFWISKASAEQRKGRAGRTG-PGVCYRLY 551 (1417)
Q Consensus 524 ~~~ISkasa~QR~GRAGR~g-~G~cy~L~ 551 (1417)
+-+++.||+||+||.| +|.||.++
T Consensus 539 ----gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 539 ----GLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred ----CHHHHHHHhhhcccCCCCcEEEEEE
Confidence 3456779999999999 89999998
No 67
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.94 E-value=2.1e-25 Score=295.51 Aligned_cols=231 Identities=19% Similarity=0.228 Sum_probs=149.0
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCc---chHHHHHHHHhcc-CCCCcEEEEccCC-CHHHHHHH
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHG---DFLLGVIKCLLHS-TAEVKIILMSATI-NIELFHTY 369 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~---d~ll~llk~l~~~-r~~~qvIlmSATl-n~~~~~~~ 369 (1417)
|++++||+++..+... .....|+++++|||||+|+. ... ..+...+.++... ..+.|+|++|||+ |.+.+++|
T Consensus 101 dILVTTPEsL~~LLts-k~r~~L~~Vr~VIVDE~H~L-~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~eevA~~ 178 (1490)
T PRK09751 101 DILITTPESLYLMLTS-RARETLRGVETVIIDEVHAV-AGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAF 178 (1490)
T ss_pred CEEEecHHHHHHHHhh-hhhhhhccCCEEEEecHHHh-cccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCHHHHHHH
Confidence 5566677766543211 11246899999999999933 332 2233344444443 4678999999999 78899999
Q ss_pred hccC--ceEEEeC-CcccceeEEecccccccccc---ccCC-------CCChHHHHHHHHHhhCCCCCCCcEEEEeCCHH
Q psy3476 370 FNRI--AKIIKVP-GRLYPIQLEYHPIVELDRTK---SEKL-------DPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436 (1417)
Q Consensus 370 f~~~--~~vi~v~-gr~~pv~v~~~~~~~~~~~~---~~~~-------~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~ 436 (1417)
+... ..++..+ .+..++++.. +........ .... .......+...+...+ ...+++||||||+.
T Consensus 179 L~g~~pv~Iv~~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i--~~~~stLVFvNSR~ 255 (1490)
T PRK09751 179 LGGDRPVTVVNPPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEV--LRHRSTIVFTNSRG 255 (1490)
T ss_pred hcCCCCEEEECCCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHHHHHHHHH--hcCCCEEEECCCHH
Confidence 9643 2233222 2233444322 211100000 0000 0000011111122222 23578999999999
Q ss_pred HHHHHHHHHHhhhhc----------------------------cCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc
Q psy3476 437 EISSIVRAAQEYNEK----------------------------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488 (1417)
Q Consensus 437 eie~la~~L~~~~~~----------------------------~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn 488 (1417)
.++.++..|++.... .....+..+||+|++++|..+++.|++|+.+|||||+
T Consensus 256 ~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATs 335 (1490)
T PRK09751 256 LAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATS 335 (1490)
T ss_pred HHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCc
Confidence 999999999764311 0113467899999999999999999999999999999
Q ss_pred hhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC--CCeEE
Q psy3476 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG--PGVCY 548 (1417)
Q Consensus 489 Iae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy 548 (1417)
++|+||||++|++||+ |+.|. |.++|.||+|||||.. .+.++
T Consensus 336 sLELGIDIg~VDlVIq--------~gsP~----------sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 336 SLELGIDMGAVDLVIQ--------VATPL----------SVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHccCCcccCCEEEE--------eCCCC----------CHHHHHHHhCCCCCCCCCccEEE
Confidence 9999999999999999 76654 5666779999999974 34444
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.94 E-value=1.4e-25 Score=267.38 Aligned_cols=201 Identities=20% Similarity=0.259 Sum_probs=124.6
Q ss_pred ccEEEEecCcccccCc--chHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccc
Q psy3476 320 YDVLVLDEIHERHLHG--DFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELD 397 (1417)
Q Consensus 320 ~~~VIlDEaHER~l~~--d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~ 397 (1417)
.++||+||+|. .... +++..+++.+. ..+.|+++||||++ +.+.+++....... .. ...+..... ......
T Consensus 125 ~~~iViDE~h~-~~~~~~~~l~~~l~~l~--~~~~~~i~~SATlp-~~l~~~~~~~~~~~-~~-~~~~~~~~~-~~~~~~ 197 (358)
T TIGR01587 125 NSLLIFDEVHF-YDEYTLALILAVLEVLK--DNDVPILLMSATLP-KFLKEYAEKIGYVE-FN-EPLDLKEER-RFERHR 197 (358)
T ss_pred CCEEEEeCCCC-CCHHHHHHHHHHHHHHH--HcCCCEEEEecCch-HHHHHHHhcCCCcc-cc-cCCCCcccc-cccccc
Confidence 47999999993 3332 23334444333 35789999999997 45666663211110 00 001110000 000000
Q ss_pred cccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH----Hh
Q psy3476 398 RTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR----VF 473 (1417)
Q Consensus 398 ~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~----v~ 473 (1417)
..............+...+ +.. ..++++||||+++++++.+++.|.+.. ....+..+||++++.+|.+ ++
T Consensus 198 ~~~~~~~~~~~~~~l~~l~-~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~---~~~~~~~~h~~~~~~~r~~~~~~~~ 271 (358)
T TIGR01587 198 FIKIESDKVGEISSLERLL-EFI--KKGGKIAIIVNTVDRAQEFYQQLKENA---PEEEIMLLHSRFTEKDRAKKEAELL 271 (358)
T ss_pred ceeeccccccCHHHHHHHH-HHh--hCCCeEEEEECCHHHHHHHHHHHHhhc---CCCeEEEEECCCCHHHHHHHHHHHH
Confidence 0000000001111222222 222 236799999999999999999998632 2346999999999999976 48
Q ss_pred ccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCC-----CeEE
Q psy3476 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP-----GVCY 548 (1417)
Q Consensus 474 ~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~-----G~cy 548 (1417)
+.|++|..+|||||+++|+||||| +++||+ |+. +..++.||+||+||.|. |.+|
T Consensus 272 ~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~--------~~~------------~~~~~iqr~GR~gR~g~~~~~~~~~~ 330 (358)
T TIGR01587 272 EEMKKNEKFVIVATQVIEASLDIS-ADVMIT--------ELA------------PIDSLIQRLGRLHRYGRKNGENFEVY 330 (358)
T ss_pred HHhcCCCCeEEEECcchhceeccC-CCEEEE--------cCC------------CHHHHHHHhccccCCCCCCCCCCeEE
Confidence 899999999999999999999997 667775 432 23467799999999872 3777
Q ss_pred EecCHH
Q psy3476 549 RLYSEE 554 (1417)
Q Consensus 549 ~L~t~~ 554 (1417)
.++...
T Consensus 331 v~~~~~ 336 (358)
T TIGR01587 331 IITIAP 336 (358)
T ss_pred EEeecC
Confidence 776544
No 69
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.94 E-value=2.8e-25 Score=280.32 Aligned_cols=188 Identities=19% Similarity=0.223 Sum_probs=124.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhcc--CC---CCcEEEEccCCCH--HHHHHHhccCceEEEeCCcccce-
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHS--TA---EVKIILMSATINI--ELFHTYFNRIAKIIKVPGRLYPI- 386 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~--r~---~~qvIlmSATln~--~~~~~~f~~~~~vi~v~gr~~pv- 386 (1417)
..|++++++|+|||| ++.+|...+..++... ++ +.|+++||||++. ..+...+..+...+.+..+....
T Consensus 167 g~L~~v~~LVLDEAD---Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ 243 (844)
T TIGR02621 167 GFLGQDALIVHDEAH---LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAK 243 (844)
T ss_pred hhhccceEEEEehhh---hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccccccc
Confidence 357899999999999 5667777766666542 22 3699999999963 34444443333233332211111
Q ss_pred e-EEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCC
Q psy3476 387 Q-LEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLS 465 (1417)
Q Consensus 387 ~-v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls 465 (1417)
. .+|.+.... ......+..+...+. ..++++||||||+++++.+++.|.+ .++ ..+||+|+
T Consensus 244 ki~q~v~v~~e----------~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~-----~g~--~lLHG~m~ 305 (844)
T TIGR02621 244 KIVKLVPPSDE----------KFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPK-----EKF--ELLTGTLR 305 (844)
T ss_pred ceEEEEecChH----------HHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHh-----cCC--eEeeCCCC
Confidence 1 112111000 011122222222221 3467899999999999999999976 233 89999999
Q ss_pred HHHHH-----HHhccCCC----CC-------ceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCH
Q psy3476 466 LEEQD-----RVFHYAPE----GL-------RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISK 529 (1417)
Q Consensus 466 ~~eR~-----~v~~~f~~----G~-------rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISk 529 (1417)
+.+|. ++++.|++ |. .+|||||+++|+||||+. ++||+ ++.| .
T Consensus 306 q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~--------d~aP------------~ 364 (844)
T TIGR02621 306 GAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC--------DLAP------------F 364 (844)
T ss_pred HHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE--------CCCC------------H
Confidence 99999 78888876 44 689999999999999997 66665 3322 2
Q ss_pred hhHHhhcCcCCCCCC
Q psy3476 530 ASAEQRKGRAGRTGP 544 (1417)
Q Consensus 530 asa~QR~GRAGR~g~ 544 (1417)
.+|.||+||+||.|.
T Consensus 365 esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 365 ESMQQRFGRVNRFGE 379 (844)
T ss_pred HHHHHHhcccCCCCC
Confidence 466699999999983
No 70
>KOG0951|consensus
Probab=99.93 E-value=6.8e-25 Score=272.17 Aligned_cols=365 Identities=20% Similarity=0.249 Sum_probs=241.6
Q ss_pred CCCccEEEEecCccccc---CcchHHHHHHHHhc----cCCCCcEEEEccCC-CHHHHHHHhccCc-eEEE--eCCcccc
Q psy3476 317 LSSYDVLVLDEIHERHL---HGDFLLGVIKCLLH----STAEVKIILMSATI-NIELFHTYFNRIA-KIIK--VPGRLYP 385 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l---~~d~ll~llk~l~~----~r~~~qvIlmSATl-n~~~~~~~f~~~~-~vi~--v~gr~~p 385 (1417)
.+-|+++|+||+| ++ ++..+..+..+... .....+++++|||+ |.++.+.|+.-+. .++. -.-|+.|
T Consensus 435 ~qlvrLlIIDEIH--LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvP 512 (1674)
T KOG0951|consen 435 EQLVRLLIIDEIH--LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVP 512 (1674)
T ss_pred HHHHHHHhhhhhh--hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCC
Confidence 4457889999999 44 44555555444332 23578999999999 7888888774322 2222 3567888
Q ss_pred eeEEeccccccccccc-cCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhh----------h----
Q psy3476 386 IQLEYHPIVELDRTKS-EKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYN----------E---- 450 (1417)
Q Consensus 386 v~v~~~~~~~~~~~~~-~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~----------~---- 450 (1417)
++..|.........+. +.++...+.+ +.+. ...++||||+.+++|..+.|+.++..+ .
T Consensus 513 L~qq~Igi~ek~~~~~~qamNe~~yeK----Vm~~---agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~ 585 (1674)
T KOG0951|consen 513 LKQQYIGITEKKPLKRFQAMNEACYEK----VLEH---AGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSA 585 (1674)
T ss_pred ccceEeccccCCchHHHHHHHHHHHHH----HHHh---CCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccc
Confidence 8877776554332111 1111112222 2222 345899999999999999999987311 0
Q ss_pred ------------------ccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCccccee
Q psy3476 451 ------------------KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMS 512 (1417)
Q Consensus 451 ------------------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~ 512 (1417)
..-.+.+..+|+||+..+|..+++.|.+|.++|+|+|.++++|||+|+-+++|- ...+
T Consensus 586 s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqv 661 (1674)
T KOG0951|consen 586 SREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQV 661 (1674)
T ss_pred hhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----Cccc
Confidence 012456788899999999999999999999999999999999999999999996 5678
Q ss_pred cccCCCccccceeecCHhhHHhhcCcCCCCC-----CCeEEEecCHHHHH--HhhccC-CCcccccChHHHHHHHHhhCC
Q psy3476 513 YDVTAKMSTLQEFWISKASAEQRKGRAGRTG-----PGVCYRLYSEEQYS--LLAEYS-TPEIRRVSIDSLLLSLVCMGL 584 (1417)
Q Consensus 513 yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-----~G~cy~L~t~~~~~--~l~~~~-~pEI~r~~L~~~lL~lk~lgi 584 (1417)
||+.++. -..+|..+..||.|||||++ .|+.+.=+++-+|. .|.+.. .++-.-..|..-+-.-+.+|+
T Consensus 662 y~pekg~----w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv 737 (1674)
T KOG0951|consen 662 YDPEKGR----WTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGV 737 (1674)
T ss_pred cCcccCc----cccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcch
Confidence 9998873 34579999999999999997 35544444444443 233322 222222234333333444443
Q ss_pred CCCc--------CCCC---CCCCC-----------------cchhHHHHHHHHhcCCCCCC-----CCcChhhhhccCCC
Q psy3476 585 GDVR--------KFPF---LEAPP-----------------AENIESSVRSLTQHGAIDSK-----ERVTSLGRFLSDLP 631 (1417)
Q Consensus 585 ~~~~--------~f~~---l~pP~-----------------~~~l~~Al~~L~~lGaId~~-----~~lT~LG~~ls~lp 631 (1417)
.+.+ +|.+ +..|. .+.+.+|...|++.|.|--+ -..|.+|++.+.++
T Consensus 738 ~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yy 817 (1674)
T KOG0951|consen 738 RSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYY 817 (1674)
T ss_pred hhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceee
Confidence 3222 1100 11111 24678889999999999543 25899999999999
Q ss_pred CChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCChhHHHHHhhcc-------cCCCChHHHHHHHH-HHH
Q psy3476 632 VDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELE-------SNHGDPLTVLNAYK-EWL 700 (1417)
Q Consensus 632 ldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~-------~~~sD~ltlln~f~-~w~ 700 (1417)
+.-......-....-.|.+ +.+..+.|..+.|.....++++..+.++.+. .+-.|+.|-+|++. .|.
T Consensus 818 i~~~s~~~yn~~L~~~~~~--i~lfrifs~seEfk~~svr~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yi 892 (1674)
T KOG0951|consen 818 ITHGSMATYNELLKETMSE--IDLFRIFSKSEEFKYVSVREEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYI 892 (1674)
T ss_pred eecchHHHHHhhhhhhhcc--chhhhhhhhccccccCCccHHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHH
Confidence 9766655444443333333 4578888899999888877777666665433 34578888888864 344
No 71
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.93 E-value=2.4e-24 Score=284.53 Aligned_cols=195 Identities=19% Similarity=0.183 Sum_probs=136.5
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHH--HHhccCceEEEeCCc-ccceeEEecc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH--TYFNRIAKIIKVPGR-LYPIQLEYHP 392 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~--~~f~~~~~vi~v~gr-~~pv~v~~~~ 392 (1417)
.+.+++++||||+|. . ++ .....+...+++.++++||||+....+. .....+..++..+.. ..+++.....
T Consensus 719 ~~~~L~lLVIDEahr-f---G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~ 792 (1147)
T PRK10689 719 KWKDLGLLIVDEEHR-F---GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792 (1147)
T ss_pred CHhhCCEEEEechhh-c---ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEe
Confidence 467899999999993 2 11 1233445567789999999998655333 222234555544322 2333322211
Q ss_pred ccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHH
Q psy3476 393 IVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRV 472 (1417)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v 472 (1417)
. +. . .+...+...+ ..+|+++||||+++.++.+++.|.+.. ++..+..+||+|++++|.++
T Consensus 793 ~-----------~~--~-~~k~~il~el--~r~gqv~vf~n~i~~ie~la~~L~~~~---p~~~v~~lHG~m~q~eRe~i 853 (1147)
T PRK10689 793 Y-----------DS--L-VVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERV 853 (1147)
T ss_pred c-----------Cc--H-HHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhC---CCCcEEEEeCCCCHHHHHHH
Confidence 0 00 0 1112222222 236899999999999999999998743 45789999999999999999
Q ss_pred hccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEec
Q psy3476 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLY 551 (1417)
Q Consensus 473 ~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~ 551 (1417)
+..|++|+.+|||||+++|+|||||++++||. +++.. | +-+++.||+||+||.| .|.||.++
T Consensus 854 m~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi--------~~ad~----f-----glaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 854 MNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERADH----F-----GLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred HHHHHhcCCCEEEECchhhcccccccCCEEEE--------ecCCC----C-----CHHHHHHHhhccCCCCCceEEEEEe
Confidence 99999999999999999999999999999984 22211 1 2245779999999999 79999887
Q ss_pred C
Q psy3476 552 S 552 (1417)
Q Consensus 552 t 552 (1417)
.
T Consensus 917 ~ 917 (1147)
T PRK10689 917 P 917 (1147)
T ss_pred C
Confidence 4
No 72
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.93 E-value=1.5e-26 Score=297.52 Aligned_cols=136 Identities=32% Similarity=0.422 Sum_probs=130.8
Q ss_pred hhhhHHHhhhccccccCCCcccccccHHHHhhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHHHH
Q psy3476 795 EEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 874 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A~~ 874 (1417)
+|++.+.||+|||||++||+||||||+++|+.|+++++|||+|+||++++|.+++||+.++.+|+|+||||..++.+|++
T Consensus 312 iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~ 391 (812)
T PRK11664 312 ISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKR 391 (812)
T ss_pred echhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccccchhhhhcccCCCCccccchhhhcccccchh--hHHHHHHhhccc
Q psy3476 875 SLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQID--TMLLLDLALNFG 930 (1417)
Q Consensus 875 ~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~--~~l~i~a~ls~~ 930 (1417)
.|+.+||||++|+||++|+.|+.||+||++||||+.|..+||.. .++.+||+|+.+
T Consensus 392 ~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~ 449 (812)
T PRK11664 392 LLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEP 449 (812)
T ss_pred HHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999764 788888888754
No 73
>KOG0350|consensus
Probab=99.93 E-value=7.8e-25 Score=252.71 Aligned_cols=118 Identities=18% Similarity=0.305 Sum_probs=104.1
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFV 502 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~V 502 (1417)
....++|+|+++.+.+.+++..|.-.. ...+..+-.+.|+++...|.+.++.|..|.+.|+||||+++||||+.+|+.|
T Consensus 427 ~k~~r~lcf~~S~~sa~Rl~~~L~v~~-~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~V 505 (620)
T KOG0350|consen 427 NKLNRTLCFVNSVSSANRLAHVLKVEF-CSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNV 505 (620)
T ss_pred hhcceEEEEecchHHHHHHHHHHHHHh-ccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceE
Confidence 345689999999999999999987322 2355677789999999999999999999999999999999999999999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
|| ||+|.....|+ ||+||+||.| .|.||.+.+..+...|
T Consensus 506 IN--------Yd~P~~~ktyV----------HR~GRTARAgq~G~a~tll~~~~~r~F 545 (620)
T KOG0350|consen 506 IN--------YDPPASDKTYV----------HRAGRTARAGQDGYAITLLDKHEKRLF 545 (620)
T ss_pred ee--------cCCCchhhHHH----------HhhcccccccCCceEEEeeccccchHH
Confidence 99 99998887777 9999999999 7999999988765543
No 74
>KOG0341|consensus
Probab=99.92 E-value=3.4e-25 Score=247.67 Aligned_cols=204 Identities=20% Similarity=0.294 Sum_probs=151.7
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCH--HHHHHHhccCceEEEeCCcccceeEEecccc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINI--ELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV 394 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~--~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~ 394 (1417)
|.-.+++.+|||| |+++.+|...+-.++.......|.++||||++. +.|++----.+..+. -||.-.-......
T Consensus 324 Ld~CRyL~lDEAD-RmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvN-VGRAGAAsldViQ-- 399 (610)
T KOG0341|consen 324 LDACRYLTLDEAD-RMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVN-VGRAGAASLDVIQ-- 399 (610)
T ss_pred HHHHHHhhhhhHH-HHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEe-cccccccchhHHH--
Confidence 3345678999999 999999999998888888889999999999973 333332111112222 2332111110000
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
...+.+. ...+-.+.+.+.+ ...++|||+..+.+++.+.++|-- .+..+..+|||-.+++|....+
T Consensus 400 evEyVkq--------EaKiVylLeCLQK-T~PpVLIFaEkK~DVD~IhEYLLl-----KGVEavaIHGGKDQedR~~ai~ 465 (610)
T KOG0341|consen 400 EVEYVKQ--------EAKIVYLLECLQK-TSPPVLIFAEKKADVDDIHEYLLL-----KGVEAVAIHGGKDQEDRHYAIE 465 (610)
T ss_pred HHHHHHh--------hhhhhhHHHHhcc-CCCceEEEeccccChHHHHHHHHH-----ccceeEEeecCcchhHHHHHHH
Confidence 0011111 0111222333332 245899999999999999999865 7889999999999999999999
Q ss_pred cCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCH
Q psy3476 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSE 553 (1417)
Q Consensus 475 ~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~ 553 (1417)
.|+.|+..|+|||++|+.|+|+|+|.+||| ||.|..+..|+ ||+||+||.| .|.+-.|+.+
T Consensus 466 afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yDMP~eIENYV----------HRIGRTGRsg~~GiATTfINK 527 (610)
T KOG0341|consen 466 AFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YDMPEEIENYV----------HRIGRTGRSGKTGIATTFINK 527 (610)
T ss_pred HHhcCCCceEEEecchhccCCCccchhhcc--------CCChHHHHHHH----------HHhcccCCCCCcceeeeeecc
Confidence 999999999999999999999999999999 99999888877 9999999999 6999988876
Q ss_pred HHH
Q psy3476 554 EQY 556 (1417)
Q Consensus 554 ~~~ 556 (1417)
...
T Consensus 528 ~~~ 530 (610)
T KOG0341|consen 528 NQE 530 (610)
T ss_pred cch
Confidence 543
No 75
>KOG0334|consensus
Probab=99.92 E-value=3e-24 Score=267.71 Aligned_cols=317 Identities=19% Similarity=0.281 Sum_probs=234.9
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---------CC-CcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---------GF-QRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---------~~-~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
+....|.+++.+|..++.+|.+|.||||||..+..+++.. +- .--++..|+|..|.|+.+.+.+-... +
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~-l 465 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKL-L 465 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhh-c
Confidence 3345588899999999999999999999998765544422 11 13567789999999998877665443 5
Q ss_pred CCeEEEEEeecc------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhH
Q psy3476 109 SNLVGYQIRFEK------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182 (1417)
Q Consensus 109 g~~vGy~ir~e~------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1417)
|..+-....... .....+.|++||+|..+..+... ||.
T Consensus 466 ~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n-------------------~gr----------------- 509 (997)
T KOG0334|consen 466 GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCAN-------------------SGR----------------- 509 (997)
T ss_pred CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhc-------------------CCc-----------------
Confidence 554422211111 12234789999999888765432 000
Q ss_pred HhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCC
Q psy3476 183 RRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPP 262 (1417)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~ 262 (1417)
T Consensus 510 -------------------------------------------------------------------------------- 509 (997)
T KOG0334|consen 510 -------------------------------------------------------------------------------- 509 (997)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHH
Q psy3476 263 LHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVI 342 (1417)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ll 342 (1417)
-..|..+.++|+||+| |+++..|...+.
T Consensus 510 ---------------------------------------------------vtnlrR~t~lv~deaD-rmfdmgfePq~~ 537 (997)
T KOG0334|consen 510 ---------------------------------------------------VTNLRRVTYLVLDEAD-RMFDMGFEPQIT 537 (997)
T ss_pred ---------------------------------------------------cccccccceeeechhh-hhheeccCcccc
Confidence 0346678899999999 899999999988
Q ss_pred HHHhccCCCCcEEEEccCCCHH--HHHHHhccCceEEEeCCccccee-EEeccccccccccccCCCCChHHHHHHHHHhh
Q psy3476 343 KCLLHSTAEVKIILMSATINIE--LFHTYFNRIAKIIKVPGRLYPIQ-LEYHPIVELDRTKSEKLDPGPYIRILSIIDKK 419 (1417)
Q Consensus 343 k~l~~~r~~~qvIlmSATln~~--~~~~~f~~~~~vi~v~gr~~pv~-v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 419 (1417)
.++...+++.|.+++|||.+.. .++.-....+--+.+.++..-.. +... ...-......+.+++++|...
T Consensus 538 ~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~-------v~V~~~e~eKf~kL~eLl~e~ 610 (997)
T KOG0334|consen 538 RILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQV-------VRVCAIENEKFLKLLELLGER 610 (997)
T ss_pred hHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEE-------EEEecCchHHHHHHHHHHHHH
Confidence 8888899999999999999744 34433322222233344321110 0000 000111223456677777665
Q ss_pred CCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCe
Q psy3476 420 YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGI 499 (1417)
Q Consensus 420 ~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V 499 (1417)
+ ..+++||||..++.+..+.+.|.+ .++.+..+||+.++.+|..+++.|++|..+++|||+++++|+|++++
T Consensus 611 ~---e~~~tiiFv~~qe~~d~l~~~L~~-----ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l 682 (997)
T KOG0334|consen 611 Y---EDGKTIIFVDKQEKADALLRDLQK-----AGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKEL 682 (997)
T ss_pred h---hcCCEEEEEcCchHHHHHHHHHHh-----cCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccc
Confidence 4 378999999999999999999987 67888889999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 500 RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
-.||+ ||.|..+..|+ ||.||+||+| .|.||.|.++++..
T Consensus 683 ~Lvvn--------yd~pnh~edyv----------hR~gRTgragrkg~AvtFi~p~q~~ 723 (997)
T KOG0334|consen 683 ILVVN--------YDFPNHYEDYV----------HRVGRTGRAGRKGAAVTFITPDQLK 723 (997)
T ss_pred eEEEE--------cccchhHHHHH----------HHhcccccCCccceeEEEeChHHhh
Confidence 99999 99999988877 9999999999 69999999986554
No 76
>KOG4284|consensus
Probab=99.92 E-value=3.2e-24 Score=252.04 Aligned_cols=313 Identities=19% Similarity=0.203 Sum_probs=233.8
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH-----cCCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEE
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ-----AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQI 116 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile-----~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~i 116 (1417)
..|..++.++..+=.+||++..|+|||..+--..++ .....++++.|+|..|+|+-.-+.+--..--|-.+...|
T Consensus 50 kiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfI 129 (980)
T KOG4284|consen 50 KIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFI 129 (980)
T ss_pred chhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEe
Confidence 346678888999989999999999999643222222 233467788899998999877654433222344444444
Q ss_pred eecc-----cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhcccc
Q psy3476 117 RFEK-----HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 191 (1417)
Q Consensus 117 r~e~-----~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 191 (1417)
.+.. ..-.+++|+++|||.+++....+
T Consensus 130 GGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~------------------------------------------------ 161 (980)
T KOG4284|consen 130 GGTAHKLDLIRLKQTRIVIGTPGRIAQLVELG------------------------------------------------ 161 (980)
T ss_pred cCchhhhhhhhhhhceEEecCchHHHHHHHhc------------------------------------------------
Confidence 4332 23357889999999988765433
Q ss_pred chhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccc
Q psy3476 192 AYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVA 271 (1417)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~ 271 (1417)
T Consensus 162 -------------------------------------------------------------------------------- 161 (980)
T KOG4284|consen 162 -------------------------------------------------------------------------------- 161 (980)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccC-cchHHHHHHHHhccCC
Q psy3476 272 ADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLH-GDFLLGVIKCLLHSTA 350 (1417)
Q Consensus 272 ~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~-~d~ll~llk~l~~~r~ 350 (1417)
-...+.++++|+|||| ..++ ..|...+-+++..++.
T Consensus 162 ------------------------------------------~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~ 198 (980)
T KOG4284|consen 162 ------------------------------------------AMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQ 198 (980)
T ss_pred ------------------------------------------CCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcch
Confidence 0345678999999999 4555 5677777778888899
Q ss_pred CCcEEEEccCCC---HHHHHHHhccCceEEEeCCcc---cceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCC
Q psy3476 351 EVKIILMSATIN---IELFHTYFNRIAKIIKVPGRL---YPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424 (1417)
Q Consensus 351 ~~qvIlmSATln---~~~~~~~f~~~~~vi~v~gr~---~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 424 (1417)
..|++.+|||.+ .+.+++|+ +++..|....+. +.++.++........ ....+...++.+.+.+..-+
T Consensus 199 ~rQv~a~SATYp~nLdn~Lsk~m-rdp~lVr~n~~d~~L~GikQyv~~~~s~nn------sveemrlklq~L~~vf~~ip 271 (980)
T KOG4284|consen 199 IRQVAAFSATYPRNLDNLLSKFM-RDPALVRFNADDVQLFGIKQYVVAKCSPNN------SVEEMRLKLQKLTHVFKSIP 271 (980)
T ss_pred hheeeEEeccCchhHHHHHHHHh-cccceeecccCCceeechhheeeeccCCcc------hHHHHHHHHHHHHHHHhhCc
Confidence 999999999995 44677777 667777766542 333333322211111 11123445666666666556
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEc
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVD 504 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VId 504 (1417)
-.+.||||+....++.++..|.. .++.+..+.|.|++.+|..+++..+.-..+|||+||..+||||-|.|+.|||
T Consensus 272 y~QAlVF~~~~sra~~~a~~L~s-----sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN 346 (980)
T KOG4284|consen 272 YVQALVFCDQISRAEPIATHLKS-----SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN 346 (980)
T ss_pred hHHHHhhhhhhhhhhHHHHHhhc-----cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe
Confidence 67899999999999999999987 7899999999999999999999999999999999999999999999999999
Q ss_pred CCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 505 SGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 505 sG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
.|+|.+..+|. ||+|||||.| .|.++.++..+.
T Consensus 347 --------iD~p~d~eTY~----------HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 347 --------IDAPADEETYF----------HRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred --------cCCCcchHHHH----------HHhhhcccccccceeEEEeccch
Confidence 99998888777 9999999999 699998875543
No 77
>KOG0346|consensus
Probab=99.91 E-value=4.7e-24 Score=242.99 Aligned_cols=207 Identities=20% Similarity=0.279 Sum_probs=161.8
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCC--CHHHHHHHhccCceEEEeCCccccee--EEec
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQ--LEYH 391 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~--v~~~ 391 (1417)
.+..++++|+|||| -.+.-++...+.+....+++..|.++||||+ |++.+.+.|..++.++.+.....|.. +...
T Consensus 167 ~~~~l~~LVvDEAD-LllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy 245 (569)
T KOG0346|consen 167 YLDSLSFLVVDEAD-LLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQY 245 (569)
T ss_pred hhhheeeEEechhh-hhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEE
Confidence 46678999999999 6677788888888888899999999999999 67888898877777777765544421 1111
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
...+. +.+.+..+...+.-. .-.|++|||+|+.+.+..+.-.|.+ -++....|.|.||..-|..
T Consensus 246 ~v~cs--------e~DKflllyallKL~---LI~gKsliFVNtIdr~YrLkLfLeq-----FGiksciLNseLP~NSR~H 309 (569)
T KOG0346|consen 246 QVKCS--------EEDKFLLLYALLKLR---LIRGKSLIFVNTIDRCYRLKLFLEQ-----FGIKSCILNSELPANSRCH 309 (569)
T ss_pred EEEec--------cchhHHHHHHHHHHH---HhcCceEEEEechhhhHHHHHHHHH-----hCcHhhhhcccccccchhh
Confidence 11111 111122222221111 1268999999999999999888887 5678889999999999999
Q ss_pred HhccCCCCCceEEEecc-----------------------------------hhhccCCcCCeEEEEcCCcccceecccC
Q psy3476 472 VFHYAPEGLRKCIVSTN-----------------------------------IAETSITIDGIRFVVDSGKVKEMSYDVT 516 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATn-----------------------------------Iae~GIdIP~V~~VIdsG~~k~~~yD~~ 516 (1417)
|++.|..|...|||||| -++||||+..|..||| ||.|
T Consensus 310 ii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN--------FD~P 381 (569)
T KOG0346|consen 310 IIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN--------FDFP 381 (569)
T ss_pred HHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee--------cCCC
Confidence 99999999999999999 2458999999999999 9999
Q ss_pred CCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 517 AKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 517 ~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
....+|+ ||+||++|.+ +|.+..++.+.+..
T Consensus 382 ~t~~sYI----------HRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 382 ETVTSYI----------HRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred CchHHHH----------HhccccccCCCCCceEEEecchHHh
Confidence 9888887 9999999999 89999998776543
No 78
>KOG0921|consensus
Probab=99.91 E-value=5.4e-26 Score=274.05 Aligned_cols=585 Identities=9% Similarity=-0.105 Sum_probs=406.6
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-------CCcEEEecchHHHHHHHHHHHHH
Q psy3476 30 KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-------FQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 30 ~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-------~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
.|+..+.-+|+.++.++|++.+..+.+.++.+.||||||++.+++++|.- .+.++.++||+..|...+.+++-
T Consensus 397 ~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~ 476 (1282)
T KOG0921|consen 397 IIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIM 476 (1282)
T ss_pred eEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccccccccccee
Confidence 45556777999999999999999999999999999999999999999853 36799999999999999999999
Q ss_pred HHccccCCeEEEEEeeccc-ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhh
Q psy3476 103 ETLSQYSNLVGYQIRFEKH-RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAP 181 (1417)
Q Consensus 103 e~~~~~g~~vGy~ir~e~~-~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1417)
+.+..++...+|.++++.. .-....+-++|++.|++.+.+++
T Consensus 477 fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m------------------------------------- 519 (1282)
T KOG0921|consen 477 FCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREM------------------------------------- 519 (1282)
T ss_pred eeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHhh-------------------------------------
Confidence 9998888888887765543 34556778999999998887651
Q ss_pred HHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCC
Q psy3476 182 KRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISP 261 (1417)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~ 261 (1417)
-+..+++.|+.|+|++++|++.-.+
T Consensus 520 -----------------------------------------------------~~ty~dl~v~lmsatIdTd~f~~~f-- 544 (1282)
T KOG0921|consen 520 -----------------------------------------------------ISTYRDLRVVLMSATIDTDLFTNFF-- 544 (1282)
T ss_pred -----------------------------------------------------hccchhhhhhhhhcccchhhhhhhh--
Confidence 1345788999999999999753221
Q ss_pred CCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcc-hH-H
Q psy3476 262 PLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGD-FL-L 339 (1417)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d-~l-l 339 (1417)
. .+-.+ ++|.|++... |. .
T Consensus 545 --------------~------------------------------------------~~p~~---~~~grt~pvq~F~le 565 (1282)
T KOG0921|consen 545 --------------S------------------------------------------SIPDV---TVHGRTFPVQSFFLE 565 (1282)
T ss_pred --------------c------------------------------------------cccce---eeccccccHHHHHHH
Confidence 1 11111 8898877653 22 2
Q ss_pred HHHHHHhccCCCCcEEEEccCCCHHHHHHHhcc--CceEEEeCCccccee--EEeccccccc-c-ccccCCCCChHHHHH
Q psy3476 340 GVIKCLLHSTAEVKIILMSATINIELFHTYFNR--IAKIIKVPGRLYPIQ--LEYHPIVELD-R-TKSEKLDPGPYIRIL 413 (1417)
Q Consensus 340 ~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~--~~~vi~v~gr~~pv~--v~~~~~~~~~-~-~~~~~~~~~~~~~il 413 (1417)
.++.-+.. +-|+|-..+ .+|.. ..+...-.++-.... -.|......+ + ...........+.++
T Consensus 566 d~~~~~~~--------vp~~~~~~k---~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~ 634 (1282)
T KOG0921|consen 566 DIIQMTQF--------VPSEPSQKK---RKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALL 634 (1282)
T ss_pred Hhhhhhhc--------cCCCcCccc---hhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHH
Confidence 22221111 113332111 11110 011111111100000 0000000000 0 000011111122222
Q ss_pred HHHH------hhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh-ccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEe
Q psy3476 414 SIID------KKYPRTERGDVLIFMSGISEISSIVRAAQEYNE-KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486 (1417)
Q Consensus 414 ~~l~------~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~-~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVA 486 (1417)
..+. ..+.-.+++.+|+|++++.-.......+.++-- ......+.+.|+.+...++..+++....+.++++..
T Consensus 635 ~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsi 714 (1282)
T KOG0921|consen 635 NDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSI 714 (1282)
T ss_pred hhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEee
Confidence 2211 111124678999999999988888777765421 124456788899999999999999999999999999
Q ss_pred cchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHHHhhccCCCc
Q psy3476 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPE 566 (1417)
Q Consensus 487 TnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~~l~~~~~pE 566 (1417)
|+..++.|.+-++.+|++++..+.+.+-....++.+...|-+.....||.||++|...+.||.+++...+..|...+.+|
T Consensus 715 Tidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhe 794 (1282)
T KOG0921|consen 715 TIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHE 794 (1282)
T ss_pred eecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHH
Confidence 99999999999999999999999998888888888999999999999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHhhCCCCCcCCC--CCCCCCcchhHHHHHHHHhcCCCCCCC--CcChhhhhccCCCCChhhHHHHHh
Q psy3476 567 IRRVSIDSLLLSLVCMGLGDVRKFP--FLEAPPAENIESSVRSLTQHGAIDSKE--RVTSLGRFLSDLPVDIPLGKMLVF 642 (1417)
Q Consensus 567 I~r~~L~~~lL~lk~lgi~~~~~f~--~l~pP~~~~l~~Al~~L~~lGaId~~~--~lT~LG~~ls~lpldp~lak~Ll~ 642 (1417)
|-++.....++.++.+-...+..++ .+.+|+...... ..|...+.++..+ .+|.+++.....++.|..+++...
T Consensus 795 malTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m--~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~ 872 (1282)
T KOG0921|consen 795 IALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREM--GALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGS 872 (1282)
T ss_pred HHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHh--hhhhccCcccchhhhhhhccCcccccceeeechhhccch
Confidence 9988777666666655445555565 355555554443 3444444444444 589999999999999999999888
Q ss_pred hhccCChhhHHHHhhhccCCCccccCCCCChhHHHHHhhcccC-CCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHH
Q psy3476 643 GSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESN-HGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQ 721 (1417)
Q Consensus 643 ~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~~~-~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~ 721 (1417)
++.+-..+....++++-....+|...- ....-+..+|+.. .+||.+.+..+..|.-+..+++.-..||..+-+..-
T Consensus 873 ~m~~~as~~s~~~~~~~~~~~~~rl~g---~q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~ 949 (1282)
T KOG0921|consen 873 VMCDVASAMSFPTPFVPREKHHSRLSG---TQRKFAGNKFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKM 949 (1282)
T ss_pred hhhhhhccccccccccccccccccccc---chhhccccccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhh
Confidence 776554455555555544455554332 2223456677644 699999999999999876666777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCc-----CCCCCCCChhHHHHHHhcCchHHHHHHHhhhccccccccccccccc
Q psy3476 722 RFYEVTKLRSQFKQVLGDSGLIT-----DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 790 (1417)
Q Consensus 722 ~L~ei~~lr~QL~~iL~~~gl~~-----~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~~~~r~rk~l~~~~ 790 (1417)
+...-+++..||+ +|..-+.+. ...+++.+.+-....|..+.+++.+..+ +|||+|..+.
T Consensus 950 t~~a~~ql~d~L~-q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~lypn~~~y~--------ekrkvLtTe~ 1014 (1282)
T KOG0921|consen 950 TDGARRQLIDVLR-QCSFPEDILFDISVNVNGPDRELNLMRSLLVMALYPNVAYYV--------EKRKVLTTEQ 1014 (1282)
T ss_pred hhhhHHHHHHHHH-hccCccccccceeeccCCCCchhHHHHHHHHhhcCCccceec--------cceeEEeecc
Confidence 9999999999999 776555532 2234444454555556666666666553 5677777544
No 79
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=6.5e-23 Score=239.53 Aligned_cols=120 Identities=23% Similarity=0.307 Sum_probs=99.5
Q ss_pred HHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEe-------cCCCCHHHHHHHhccCCCCCceEEEe
Q psy3476 414 SIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPL-------HSTLSLEEQDRVFHYAPEGLRKCIVS 486 (1417)
Q Consensus 414 ~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~L-------Hs~Ls~~eR~~v~~~f~~G~rkVLVA 486 (1417)
+.+.+.+...+...+|||.+-++.++.+.+.|.+.... ..+..+ ..||++.+|.++++.|+.|..+||||
T Consensus 355 eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~---~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVa 431 (542)
T COG1111 355 EILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIK---ARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVA 431 (542)
T ss_pred HHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCc---ceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEE
Confidence 33444444455678999999999999999999874322 111222 36899999999999999999999999
Q ss_pred cchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHH
Q psy3476 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554 (1417)
Q Consensus 487 TnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~ 554 (1417)
|+|+|.|+|||++++||- |++..+.-..+ ||.||+||..+|.+|.|+++.
T Consensus 432 TSVgEEGLDIp~vDlVif--------YEpvpSeIR~I----------QR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 432 TSVGEEGLDIPEVDLVIF--------YEPVPSEIRSI----------QRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred cccccccCCCCcccEEEE--------ecCCcHHHHHH----------HhhCccccCCCCeEEEEEecC
Confidence 999999999999999998 99877655555 999999999999999999876
No 80
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.3e-23 Score=253.78 Aligned_cols=201 Identities=22% Similarity=0.274 Sum_probs=151.8
Q ss_pred CccEEEEecCcccccCc-chHHHHHH--HHhccCCCCcEEEEccCCCHH---HHHHHhccCce-EEEe-CCcccceeEEe
Q psy3476 319 SYDVLVLDEIHERHLHG-DFLLGVIK--CLLHSTAEVKIILMSATINIE---LFHTYFNRIAK-IIKV-PGRLYPIQLEY 390 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~-d~ll~llk--~l~~~r~~~qvIlmSATln~~---~~~~~f~~~~~-vi~v-~gr~~pv~v~~ 390 (1417)
.+.++||||||+-+-++ ||...+.. .+....+++.++.++||.+.. ++.+-+.-+.+ ++.. ..|+ .++|
T Consensus 131 ~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp---Ni~~ 207 (590)
T COG0514 131 PISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP---NLAL 207 (590)
T ss_pred CCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc---hhhh
Confidence 57899999999877776 78877754 344455689999999999754 44444432222 2221 1121 1111
Q ss_pred ccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHH
Q psy3476 391 HPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD 470 (1417)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~ 470 (1417)
.-.... .+..+.. .+.+ ......++.||||.|++.++.+++.|.. .++.+..+||||+.++|.
T Consensus 208 ~v~~~~----------~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~-----~g~~a~~YHaGl~~~eR~ 270 (590)
T COG0514 208 KVVEKG----------EPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRK-----NGISAGAYHAGLSNEERE 270 (590)
T ss_pred hhhhcc----------cHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHH-----CCCceEEecCCCCHHHHH
Confidence 100000 1122222 3332 1124467789999999999999999988 689999999999999999
Q ss_pred HHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEE
Q psy3476 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYR 549 (1417)
Q Consensus 471 ~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~ 549 (1417)
.+.+.|.++..+|+|||+.+.+|||.|||++||+ ||.|.++++|. |-+|||||.| |..|+.
T Consensus 271 ~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~lP~s~EsYy----------QE~GRAGRDG~~a~ail 332 (590)
T COG0514 271 RVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YDLPGSIESYY----------QETGRAGRDGLPAEAIL 332 (590)
T ss_pred HHHHHHhcCCCcEEEEeccccCccCCCCceEEEE--------ecCCCCHHHHH----------HHHhhccCCCCcceEEE
Confidence 9999999999999999999999999999999999 99998877777 9999999999 899999
Q ss_pred ecCHHHHH
Q psy3476 550 LYSEEQYS 557 (1417)
Q Consensus 550 L~t~~~~~ 557 (1417)
||++.+..
T Consensus 333 l~~~~D~~ 340 (590)
T COG0514 333 LYSPEDIR 340 (590)
T ss_pred eeccccHH
Confidence 99988865
No 81
>KOG0327|consensus
Probab=99.91 E-value=2.4e-23 Score=236.25 Aligned_cols=207 Identities=24% Similarity=0.366 Sum_probs=159.9
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHH--HHHHHhccCceEEEeCCcccceeEEecccc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIE--LFHTYFNRIAKIIKVPGRLYPIQLEYHPIV 394 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~--~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~ 394 (1417)
...++++|+||++|+ +.-+|...+...+...+++.|++++|||++.+ .+.+-|..++..+.+.... .+..+....
T Consensus 167 ~~~iKmfvlDEaDEm-Ls~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~--ltl~gikq~ 243 (397)
T KOG0327|consen 167 TDGIKMFVLDEADEM-LSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE--LTLEGIKQF 243 (397)
T ss_pred ccceeEEeecchHhh-hccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh--hhhhheeee
Confidence 446889999999964 56679999999999999999999999999644 5566665555555444322 111111000
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
.....+.+ ++..+...+. .-.+.+|||||++.+..+...|.. .++.+..+|+.|.+.+|..+..
T Consensus 244 ~i~v~k~~---------k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~-----~~~~~s~~~~d~~q~~R~~~~~ 307 (397)
T KOG0327|consen 244 YINVEKEE---------KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRA-----HGFTVSAIHGDMEQNERDTLMR 307 (397)
T ss_pred eeeccccc---------cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhh-----CCceEEEeecccchhhhhHHHH
Confidence 00001111 2222233332 356899999999999999999966 6899999999999999999999
Q ss_pred cCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCH
Q psy3476 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSE 553 (1417)
Q Consensus 475 ~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~ 553 (1417)
.|+.|..+|+|+|+.+++|+|+-.+..||+ ||.|.+...|. ||+||+||.| +|.++.++++
T Consensus 308 ef~~gssrvlIttdl~argidv~~~slvin--------ydlP~~~~~yi----------hR~gr~gr~grkg~~in~v~~ 369 (397)
T KOG0327|consen 308 EFRSGSSRVLITTDLLARGIDVQQVSLVVN--------YDLPARKENYI----------HRIGRAGRFGRKGVAINFVTE 369 (397)
T ss_pred HhhcCCceEEeeccccccccchhhcceeee--------eccccchhhhh----------hhcccccccCCCceeeeeehH
Confidence 999999999999999999999999999999 99998877776 9999999999 8999999999
Q ss_pred HHHHHhh
Q psy3476 554 EQYSLLA 560 (1417)
Q Consensus 554 ~~~~~l~ 560 (1417)
++...+.
T Consensus 370 ~d~~~lk 376 (397)
T KOG0327|consen 370 EDVRDLK 376 (397)
T ss_pred hhHHHHH
Confidence 8876654
No 82
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.90 E-value=2.2e-22 Score=249.61 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=87.9
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEec-chhhccCCcCCeEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST-NIAETSITIDGIRFV 502 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVAT-nIae~GIdIP~V~~V 502 (1417)
.++++|||+...++++.+++.|++ .+..+..+||+++.++|..+++.|++|...||||| +++++|+|+|+++.|
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~-----~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~v 417 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKK-----VYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHV 417 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHH-----cCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEE
Confidence 457899999999999999999987 56789999999999999999999999999999998 899999999999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCe
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~ 546 (1417)
|. ++++.. +..+.||+||+||.++|+
T Consensus 418 Il--------~~p~~s----------~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 418 IF--------AHPSKS----------KIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EE--------ecCCcc----------hhhhhhhhhccccCCCCC
Confidence 97 666553 445559999999998654
No 83
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.90 E-value=5.4e-22 Score=236.21 Aligned_cols=187 Identities=16% Similarity=0.231 Sum_probs=119.2
Q ss_pred CCCCccEEEEecCcccccCcc-hHH---HHHHHHhccCCCCcEEEEccCCCHHHHH---HHhccCceEEEeCCcc--c--
Q psy3476 316 FLSSYDVLVLDEIHERHLHGD-FLL---GVIKCLLHSTAEVKIILMSATINIELFH---TYFNRIAKIIKVPGRL--Y-- 384 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d-~ll---~llk~l~~~r~~~qvIlmSATln~~~~~---~~f~~~~~vi~v~gr~--~-- 384 (1417)
++.++++||+||+|....+.. .+. .....+.......++|+||||++..... +......+++.+.|+. +
T Consensus 142 ~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~ 221 (357)
T TIGR03158 142 FYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPD 221 (357)
T ss_pred hhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCC
Confidence 467899999999996554331 222 2233333233457999999999754222 2210135666666661 1
Q ss_pred ------------------ceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHH
Q psy3476 385 ------------------PIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQ 446 (1417)
Q Consensus 385 ------------------pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~ 446 (1417)
+++..+.+.. ...........+.+.+.+....++++||||+|++.++.+++.|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~ 293 (357)
T TIGR03158 222 NPELEADNKTQSFRPVLPPVELELIPAP--------DFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQ 293 (357)
T ss_pred ChhhhccccccccceeccceEEEEEeCC--------chhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHh
Confidence 1222222100 00001122334444444433456799999999999999999998
Q ss_pred hhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceee
Q psy3476 447 EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW 526 (1417)
Q Consensus 447 ~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ 526 (1417)
+.. .++.+..+||.+++.+|.++. +..|+|||+++|+|||||++. ||. + +.
T Consensus 294 ~~~---~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~~-vi~---------~-p~--------- 344 (357)
T TIGR03158 294 QQG---LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRDW-LIF---------S-AR--------- 344 (357)
T ss_pred hhC---CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCce-EEE---------C-CC---------
Confidence 621 245788999999999997653 578999999999999999874 442 2 32
Q ss_pred cCHhhHHhhcCcCC
Q psy3476 527 ISKASAEQRKGRAG 540 (1417)
Q Consensus 527 ISkasa~QR~GRAG 540 (1417)
+.++|.||+||+|
T Consensus 345 -~~~~yiqR~GR~g 357 (357)
T TIGR03158 345 -DAAAFWQRLGRLG 357 (357)
T ss_pred -CHHHHhhhcccCC
Confidence 3456669999998
No 84
>KOG0354|consensus
Probab=99.89 E-value=2.9e-22 Score=246.28 Aligned_cols=127 Identities=19% Similarity=0.332 Sum_probs=100.5
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc--cCCcEEEEe----cCCCCHHHHHHHhccCCCCCceEE
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK--SQGWIVLPL----HSTLSLEEQDRVFHYAPEGLRKCI 484 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~--~~~~~V~~L----Hs~Ls~~eR~~v~~~f~~G~rkVL 484 (1417)
.+.+.+.+.+...+...+|||+.+++.+..+...|.+.... .+.+-+..- -.+|++.+|.++++.|++|..+||
T Consensus 399 ~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvL 478 (746)
T KOG0354|consen 399 KLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVL 478 (746)
T ss_pred HHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEE
Confidence 34444444454556678999999999999999998753221 111222211 248999999999999999999999
Q ss_pred EecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHH
Q psy3476 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQY 556 (1417)
Q Consensus 485 VATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~ 556 (1417)
|||+|+|.|+||+.++.||- ||..++....+ ||+|| ||...|.|+.|++..+.
T Consensus 479 VATSV~EEGLDI~ec~lVIc--------Yd~~snpIrmI----------QrrGR-gRa~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 479 VATSVAEEGLDIGECNLVIC--------YDYSSNPIRMV----------QRRGR-GRARNSKCVLLTTGSEV 531 (746)
T ss_pred EEecchhccCCcccccEEEE--------ecCCccHHHHH----------HHhcc-ccccCCeEEEEEcchhH
Confidence 99999999999999999998 99888766666 99999 99999999999985443
No 85
>KOG0948|consensus
Probab=99.89 E-value=4e-23 Score=246.47 Aligned_cols=324 Identities=18% Similarity=0.192 Sum_probs=236.8
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC--CCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEEe
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG--FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~--~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ir 117 (1417)
+.++|...+..+..++.|+|+|.|.+|||..+-..|...- .+|+++|.|-+.+..|=.+.+-.|++ .||.. .
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~-----DVGLM-T 203 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFK-----DVGLM-T 203 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhc-----cccee-e
Confidence 4679999999999999999999999999976555554432 37999999998887887777777763 35552 3
Q ss_pred ecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccchhhhh
Q psy3476 118 FEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEE 197 (1417)
Q Consensus 118 ~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 197 (1417)
++-..++....++||+.+|..++-++
T Consensus 204 GDVTInP~ASCLVMTTEILRsMLYRG------------------------------------------------------ 229 (1041)
T KOG0948|consen 204 GDVTINPDASCLVMTTEILRSMLYRG------------------------------------------------------ 229 (1041)
T ss_pred cceeeCCCCceeeeHHHHHHHHHhcc------------------------------------------------------
Confidence 34456788899999999988877543
Q ss_pred HHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccccccccc
Q psy3476 198 EEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADYFLS 277 (1417)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~~~l~ 277 (1417)
T Consensus 230 -------------------------------------------------------------------------------- 229 (1041)
T KOG0948|consen 230 -------------------------------------------------------------------------------- 229 (1041)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 278 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 278 ~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
..-+..+..||+||+| .+-+.+-.-.+...+..++.+.+.|++
T Consensus 230 ------------------------------------SEvmrEVaWVIFDEIH-YMRDkERGVVWEETIIllP~~vr~VFL 272 (1041)
T KOG0948|consen 230 ------------------------------------SEVMREVAWVIFDEIH-YMRDKERGVVWEETIILLPDNVRFVFL 272 (1041)
T ss_pred ------------------------------------chHhheeeeEEeeeeh-hccccccceeeeeeEEeccccceEEEE
Confidence 0234567889999999 222222222223345567889999999
Q ss_pred ccCC-CHHHHHHHhc----cCceEEEeCCcccceeEEecccccccc----ccccCCCCC---------------------
Q psy3476 358 SATI-NIELFHTYFN----RIAKIIKVPGRLYPIQLEYHPIVELDR----TKSEKLDPG--------------------- 407 (1417)
Q Consensus 358 SATl-n~~~~~~~f~----~~~~vi~v~gr~~pv~v~~~~~~~~~~----~~~~~~~~~--------------------- 407 (1417)
|||+ |+..|++|.. .+|.++..+.|+.|++.+..|.-.... .....+..+
T Consensus 273 SATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~ 352 (1041)
T KOG0948|consen 273 SATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKA 352 (1041)
T ss_pred eccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccc
Confidence 9999 7999999985 489999999999999866444221110 000001111
Q ss_pred -----------------hHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhh---------------------
Q psy3476 408 -----------------PYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYN--------------------- 449 (1417)
Q Consensus 408 -----------------~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~--------------------- 449 (1417)
.+.+++..+.. ....+||||+-++++|+..|..+.++.
T Consensus 353 ~~k~~kG~~~~~~~~~s~i~kiVkmi~~----~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 353 NKKGRKGGTGGKGPGDSDIYKIVKMIME----RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred ccccccCCcCCCCCCcccHHHHHHHHHh----hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 12233333322 234589999999999999998875421
Q ss_pred -hcc------------CCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccC
Q psy3476 450 -EKS------------QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVT 516 (1417)
Q Consensus 450 -~~~------------~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~ 516 (1417)
+.. ..-.+..+||||-+--++.|+-.|.+|-+||++||.+.+.|+|.|+-++|.- ..+.||..
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT----~~rKfDG~ 504 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT----AVRKFDGK 504 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe----eccccCCc
Confidence 000 1124667799999999999999999999999999999999999999998874 33345543
Q ss_pred CCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHH
Q psy3476 517 AKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEE 554 (1417)
Q Consensus 517 ~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~ 554 (1417)
...|||..+|.||.|||||.| .|+|+.++++.
T Consensus 505 ------~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 505 ------KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ------ceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 356999999999999999999 69999988754
No 86
>KOG0344|consensus
Probab=99.89 E-value=6.9e-23 Score=242.55 Aligned_cols=231 Identities=19% Similarity=0.249 Sum_probs=160.4
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCc-chHHHHHHHHhcc-CCCCcEEEEccCCC--HHHHHHHh
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHG-DFLLGVIKCLLHS-TAEVKIILMSATIN--IELFHTYF 370 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~-d~ll~llk~l~~~-r~~~qvIlmSATln--~~~~~~~f 370 (1417)
|++++||..+...--.-...-.++++.++|+||+| +.+.. .|...+-.++... .+++++-+||||++ ++.+++..
T Consensus 264 dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i 342 (593)
T KOG0344|consen 264 DILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELI 342 (593)
T ss_pred HHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHh
Confidence 55666666643210000111368899999999999 55555 5555555544433 47889999999994 56666655
Q ss_pred ccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh
Q psy3476 371 NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE 450 (1417)
Q Consensus 371 ~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~ 450 (1417)
..+...+.+..+.-..+..-.... .... .......+.+.+... -..++|||+-+.+.+..+.+.|..
T Consensus 343 ~~~~~~vivg~~~sa~~~V~Qelv---F~gs---e~~K~lA~rq~v~~g----~~PP~lIfVQs~eRak~L~~~L~~--- 409 (593)
T KOG0344|consen 343 KSDLKRVIVGLRNSANETVDQELV---FCGS---EKGKLLALRQLVASG----FKPPVLIFVQSKERAKQLFEELEI--- 409 (593)
T ss_pred hccceeEEEecchhHhhhhhhhhe---eeec---chhHHHHHHHHHhcc----CCCCeEEEEecHHHHHHHHHHhhh---
Confidence 444444444433211100000000 0000 001122333344333 356899999999999999999852
Q ss_pred ccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHh
Q psy3476 451 KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKA 530 (1417)
Q Consensus 451 ~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISka 530 (1417)
..++.|...||..++.+|+.++++|+.|++.|++||++++||+|+-+|+.||| ||.|....+|+
T Consensus 410 -~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn--------yD~p~s~~syi------- 473 (593)
T KOG0344|consen 410 -YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN--------YDFPQSDLSYI------- 473 (593)
T ss_pred -ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe--------cCCCchhHHHH-------
Confidence 26789999999999999999999999999999999999999999999999999 99987655555
Q ss_pred hHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 531 SAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 531 sa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
||+||+||.| +|++|.+|++++...
T Consensus 474 ---hrIGRtgRag~~g~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 474 ---HRIGRTGRAGRSGKAITFYTDQDMPR 499 (593)
T ss_pred ---HHhhccCCCCCCcceEEEeccccchh
Confidence 9999999999 799999999966543
No 87
>PRK13766 Hef nuclease; Provisional
Probab=99.88 E-value=2.3e-21 Score=253.18 Aligned_cols=110 Identities=23% Similarity=0.320 Sum_probs=96.9
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCC--------CCHHHHHHHhccCCCCCceEEEecchhhccC
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHST--------LSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~--------Ls~~eR~~v~~~f~~G~rkVLVATnIae~GI 494 (1417)
.+++++||||++++.++.+++.|.. .++.+..+||. +++.+|..+++.|++|..+|+|||+++++|+
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~-----~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGl 437 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEK-----EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGL 437 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHh-----CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCC
Confidence 4578999999999999999999965 55667777775 9999999999999999999999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHH
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~ 555 (1417)
|+|++++||+ ||++.+...+ .||+||+||.++|.+|.|+++..
T Consensus 438 di~~~~~VI~--------yd~~~s~~r~----------iQR~GR~gR~~~~~v~~l~~~~t 480 (773)
T PRK13766 438 DIPSVDLVIF--------YEPVPSEIRS----------IQRKGRTGRQEEGRVVVLIAKGT 480 (773)
T ss_pred CcccCCEEEE--------eCCCCCHHHH----------HHHhcccCcCCCCEEEEEEeCCC
Confidence 9999999999 9987655444 49999999999999999987543
No 88
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.88 E-value=2.5e-21 Score=242.69 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=123.8
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++.+||.|. ..+.|.+.+ +..++.+|... |+.-...|...... ....+..++..+.+.+ ..+.++|
T Consensus 360 ~kl~GmTGTa~~~~~Ef~~iY--~l~v~~IPt~k-p~~r~d~~d~i~~~------~~~K~~ai~~~i~~~~--~~~~pvL 428 (762)
T TIGR03714 360 NKLSGMTGTGKVAEKEFIETY--SLSVVKIPTNK-PIIRIDYPDKIYAT------LPEKLMATLEDVKEYH--ETGQPVL 428 (762)
T ss_pred chhcccCCCChhHHHHHHHHh--CCCEEEcCCCC-CeeeeeCCCeEEEC------HHHHHHHHHHHHHHHh--hCCCCEE
Confidence 4788999998 345677766 56677777532 22221111111000 0012334555554443 3467899
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC---------CeE
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID---------GIR 500 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP---------~V~ 500 (1417)
|||++++.++.+++.|.+ .++.+..+||.+.+.++..+..+++.| +|+||||+|+||+||| ++.
T Consensus 429 Ift~s~~~se~ls~~L~~-----~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~ 501 (762)
T TIGR03714 429 LITGSVEMSEIYSELLLR-----EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLA 501 (762)
T ss_pred EEECcHHHHHHHHHHHHH-----CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeE
Confidence 999999999999999987 678899999999999999999888887 7999999999999999 999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
+||+ |++|.... . .||+|||||.| ||.++.+++.++
T Consensus 502 vIit--------~~~ps~ri----------d-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 502 VIGT--------ERMENSRV----------D-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred EEEe--------cCCCCcHH----------H-HHhhhcccCCCCceeEEEEEccch
Confidence 9998 88876422 2 59999999999 899999988654
No 89
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=6.1e-21 Score=236.87 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=117.0
Q ss_pred CcEEEEccCCC--HHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATIN--IELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++.+||||.. .+.|.++++ ..++.+|...-.....+....... .......++..+.+.. ..+.++|
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~--l~vv~IPt~kp~~r~~~~~~v~~t-------~~~K~~aL~~~i~~~~--~~~~pvL 477 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYG--LPVVRIPTNRPSQRRHLPDEVFLT-------AAAKWAAVAARVRELH--AQGRPVL 477 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHC--CCeEEeCCCCCccceecCCEEEeC-------HHHHHHHHHHHHHHHH--hcCCCEE
Confidence 37889999994 456777773 345555533211111111100000 0012333444444332 2346799
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC---CeE-----E
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID---GIR-----F 501 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP---~V~-----~ 501 (1417)
|||+|++.++.+++.|.+ .++.+..+||.++..++..+..++.. ..|+||||+|+||+||+ +|. +
T Consensus 478 Ift~t~~~se~L~~~L~~-----~gi~~~~Lhg~~~~rE~~ii~~ag~~--g~VlVATdmAgRGtDI~l~~~V~~~GGLh 550 (656)
T PRK12898 478 VGTRSVAASERLSALLRE-----AGLPHQVLNAKQDAEEAAIVARAGQR--GRITVATNMAGRGTDIKLEPGVAARGGLH 550 (656)
T ss_pred EEeCcHHHHHHHHHHHHH-----CCCCEEEeeCCcHHHHHHHHHHcCCC--CcEEEEccchhcccCcCCccchhhcCCCE
Confidence 999999999999999987 67899999999776666655555444 46999999999999999 776 9
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
||+ ||.|.+...|. ||+||+||.| +|.|+.+++.++
T Consensus 551 VI~--------~d~P~s~r~y~----------hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 551 VIL--------TERHDSARIDR----------QLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred EEE--------cCCCCCHHHHH----------HhcccccCCCCCeEEEEEechhH
Confidence 999 88887655555 9999999999 899999998755
No 90
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.87 E-value=2.5e-21 Score=249.85 Aligned_cols=330 Identities=19% Similarity=0.201 Sum_probs=214.3
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC----CcEEEecchHHHHHHHHHHHHHHHccccCC
Q psy3476 35 QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACTQPRRIACISLSKRVAYETLSQYSN 110 (1417)
Q Consensus 35 r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~----~~i~~tqPrr~aa~~~a~rva~e~~~~~g~ 110 (1417)
+..-.+|.||.++++.+.+++++||+.+||||||..+..+|++... .+.++.-|++.+|..-++|+.+... .+|.
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~-~~~~ 144 (851)
T COG1205 66 AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELIS-DLPG 144 (851)
T ss_pred hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHH-hCCC
Confidence 4445589999999999999999999999999999998888887543 4677888988888888888876653 3443
Q ss_pred eEEEEE-----eeccc---ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhH
Q psy3476 111 LVGYQI-----RFEKH---RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182 (1417)
Q Consensus 111 ~vGy~i-----r~e~~---~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1417)
.|+..+ ..+.+ .....+|++.++.||-..+...
T Consensus 145 ~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~--------------------------------------- 185 (851)
T COG1205 145 KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRN--------------------------------------- 185 (851)
T ss_pred cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccC---------------------------------------
Confidence 343322 00111 1334556665555555443322
Q ss_pred HhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCC
Q psy3476 183 RRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPP 262 (1417)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~ 262 (1417)
+.++
T Consensus 186 -------~~~~--------------------------------------------------------------------- 189 (851)
T COG1205 186 -------HDAW--------------------------------------------------------------------- 189 (851)
T ss_pred -------cchH---------------------------------------------------------------------
Confidence 0000
Q ss_pred CcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCc-ccccCcchHHHH
Q psy3476 263 LHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIH-ERHLHGDFLLGV 341 (1417)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaH-ER~l~~d~ll~l 341 (1417)
.-.++++++||+||+| -|+..+.-...+
T Consensus 190 ---------------------------------------------------~~~~~~Lk~lVvDElHtYrGv~GS~vA~l 218 (851)
T COG1205 190 ---------------------------------------------------LWLLRNLKYLVVDELHTYRGVQGSEVALL 218 (851)
T ss_pred ---------------------------------------------------HHHHhcCcEEEEecceeccccchhHHHHH
Confidence 0235668999999999 344444334445
Q ss_pred HHHHhcc----CCCCcEEEEccCC-C-HHHHHHHhccCceE-EEeCCcccceeEEeccccccccccccCCCCChHHHHHH
Q psy3476 342 IKCLLHS----TAEVKIILMSATI-N-IELFHTYFNRIAKI-IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILS 414 (1417)
Q Consensus 342 lk~l~~~----r~~~qvIlmSATl-n-~~~~~~~f~~~~~v-i~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~ 414 (1417)
++++... ..+.|+|.+|||+ | .+...++++..... +.-.+.+-.........+...... ...........-.
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~-~~~r~s~~~~~~~ 297 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELA-ESIRRSALAELAT 297 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhh-hhcccchHHHHHH
Confidence 5555443 3489999999999 4 44555666544444 433333333222222211110000 0011111222222
Q ss_pred HHHhhCCCCCCCcEEEEeCCHHHHHHHHHH----HHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh
Q psy3476 415 IIDKKYPRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490 (1417)
Q Consensus 415 ~l~~~~~~~~~g~iLVFl~~~~eie~la~~----L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa 490 (1417)
.+...+ ..+-++|||+.++..++.++.. +.... ......+..++|++..++|.+++..|+.|+.+++++||.+
T Consensus 298 ~~~~~~--~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Al 374 (851)
T COG1205 298 LAALLV--RNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNAL 374 (851)
T ss_pred HHHHHH--HcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhh
Confidence 222222 2356899999999999999733 33322 2234568899999999999999999999999999999999
Q ss_pred hccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecC
Q psy3476 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYS 552 (1417)
Q Consensus 491 e~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t 552 (1417)
|-||||.++..||..|+ |. .|..+++||+|||||.+ .+..+..+.
T Consensus 375 elgidiG~ldavi~~g~--------P~---------~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 375 ELGIDIGSLDAVIAYGY--------PG---------VSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred hhceeehhhhhHhhcCC--------CC---------chHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999999665 22 15677889999999998 555554444
No 91
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.7e-21 Score=245.91 Aligned_cols=330 Identities=18% Similarity=0.207 Sum_probs=239.3
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC--CCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG--FQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~--~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
....+..+|++.+..|..+..|+++||||||||...-.++.... .+++++|.|-+....|....+-.+.+.- ...||
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vG 194 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVG 194 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhh-hhhcc
Confidence 34556789999999999999999999999999976544444332 3579999999988888888887776532 23356
Q ss_pred EEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccch
Q psy3476 114 YQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAY 193 (1417)
Q Consensus 114 y~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 193 (1417)
. +.++-..++.+.++++|+.+|..++-.+
T Consensus 195 L-~TGDv~IN~~A~clvMTTEILRnMlyrg-------------------------------------------------- 223 (1041)
T COG4581 195 L-MTGDVSINPDAPCLVMTTEILRNMLYRG-------------------------------------------------- 223 (1041)
T ss_pred c-eecceeeCCCCceEEeeHHHHHHHhccC--------------------------------------------------
Confidence 4 3445567888999999998887776443
Q ss_pred hhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccccc
Q psy3476 194 EIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAAD 273 (1417)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~ 273 (1417)
T Consensus 224 -------------------------------------------------------------------------------- 223 (1041)
T COG4581 224 -------------------------------------------------------------------------------- 223 (1041)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCc
Q psy3476 274 YFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVK 353 (1417)
Q Consensus 274 ~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~q 353 (1417)
...+..+..||+||+| ..-+.+-.......++..+..++
T Consensus 224 ----------------------------------------~~~~~~i~~ViFDEvH-yi~D~eRG~VWEE~Ii~lP~~v~ 262 (1041)
T COG4581 224 ----------------------------------------SESLRDIEWVVFDEVH-YIGDRERGVVWEEVIILLPDHVR 262 (1041)
T ss_pred ----------------------------------------cccccccceEEEEeee-eccccccchhHHHHHHhcCCCCc
Confidence 0456778999999999 33333333444556677888999
Q ss_pred EEEEccCC-CHHHHHHHhc----cCceEEEeCCcccceeEEecccccc----ccccc---cC---------------CC-
Q psy3476 354 IILMSATI-NIELFHTYFN----RIAKIIKVPGRLYPIQLEYHPIVEL----DRTKS---EK---------------LD- 405 (1417)
Q Consensus 354 vIlmSATl-n~~~~~~~f~----~~~~vi~v~gr~~pv~v~~~~~~~~----~~~~~---~~---------------~~- 405 (1417)
+|+||||+ |++.|+.|+. .++.+|..+.|+.|++.++.+.... +.... .. ..
T Consensus 263 ~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~ 342 (1041)
T COG4581 263 FVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRET 342 (1041)
T ss_pred EEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhcccc
Confidence 99999999 8999999996 3788889999999999887654110 00000 00 00
Q ss_pred -C--------------------ChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhh---------------
Q psy3476 406 -P--------------------GPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYN--------------- 449 (1417)
Q Consensus 406 -~--------------------~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~--------------- 449 (1417)
. .....+++.+. ....-++++|+-++..|+..+..+....
T Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~----~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii 418 (1041)
T COG4581 343 DDGDVGRYARRTKALRGSAKGPAGRPEIVNKLD----KDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREII 418 (1041)
T ss_pred CccccccccccccccCCcccccccchHHHhhhh----hhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHH
Confidence 0 00011222221 1334589999999999999888775210
Q ss_pred --------hccCCc-------------EEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcc
Q psy3476 450 --------EKSQGW-------------IVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKV 508 (1417)
Q Consensus 450 --------~~~~~~-------------~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~ 508 (1417)
....++ .+..+|+||-+..+..++..|..|.+||++||.+.+.|+|.|.-++|+- ++.
T Consensus 419 ~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~-~l~ 497 (1041)
T COG4581 419 DHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFT-SLS 497 (1041)
T ss_pred HHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeee-eeE
Confidence 001111 2446799999999999999999999999999999999999998887773 443
Q ss_pred cceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecC
Q psy3476 509 KEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYS 552 (1417)
Q Consensus 509 k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t 552 (1417)
| ||.. ...|+|..+|.|+.|||||.| .|.++....
T Consensus 498 K---~dG~------~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 498 K---FDGN------GHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred E---ecCC------ceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 3 4422 346899999999999999999 599987743
No 92
>KOG0947|consensus
Probab=99.87 E-value=2.4e-21 Score=236.36 Aligned_cols=329 Identities=16% Similarity=0.171 Sum_probs=228.3
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHH--HHcCCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEE
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL--VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQ 115 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~i--le~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ 115 (1417)
.-+..+|++++..+..++.|.|.|+|.+|||..+-..| ......|.++|.|-+....| --.++.+.+|. || -
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQ----KfRDFk~tF~D-vg-L 369 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQ----KFRDFKETFGD-VG-L 369 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccc----hHHHHHHhccc-cc-e
Confidence 33467899999999999999999999999997654433 23345689999997654443 34455555553 45 4
Q ss_pred EeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccchhh
Q psy3476 116 IRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 195 (1417)
Q Consensus 116 ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 195 (1417)
+.++-...+...+++||+.+|..+|-++
T Consensus 370 lTGDvqinPeAsCLIMTTEILRsMLYrg---------------------------------------------------- 397 (1248)
T KOG0947|consen 370 LTGDVQINPEASCLIMTTEILRSMLYRG---------------------------------------------------- 397 (1248)
T ss_pred eecceeeCCCcceEeehHHHHHHHHhcc----------------------------------------------------
Confidence 5667778899999999999998877543
Q ss_pred hhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccccccc
Q psy3476 196 EEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADYF 275 (1417)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~~~ 275 (1417)
T Consensus 398 -------------------------------------------------------------------------------- 397 (1248)
T KOG0947|consen 398 -------------------------------------------------------------------------------- 397 (1248)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEE
Q psy3476 276 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKII 355 (1417)
Q Consensus 276 l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvI 355 (1417)
...++++..||+||+| ..-+.+-.-.+...++.+++++++|
T Consensus 398 --------------------------------------adliRDvE~VIFDEVH-YiND~eRGvVWEEViIMlP~HV~~I 438 (1248)
T KOG0947|consen 398 --------------------------------------ADLIRDVEFVIFDEVH-YINDVERGVVWEEVIIMLPRHVNFI 438 (1248)
T ss_pred --------------------------------------cchhhccceEEEeeee-ecccccccccceeeeeeccccceEE
Confidence 0234568899999999 1111111122334566788999999
Q ss_pred EEccCC-CHHHHHHHhcc----CceEEEeCCcccceeEEecccc------ccc-------c------cc-----------
Q psy3476 356 LMSATI-NIELFHTYFNR----IAKIIKVPGRLYPIQLEYHPIV------ELD-------R------TK----------- 400 (1417)
Q Consensus 356 lmSATl-n~~~~~~~f~~----~~~vi~v~gr~~pv~v~~~~~~------~~~-------~------~~----------- 400 (1417)
++|||+ |...|++|.+. +..++....|++|++.+..... ... . .+
T Consensus 439 lLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~ 518 (1248)
T KOG0947|consen 439 LLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKS 518 (1248)
T ss_pred EEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccc
Confidence 999999 79999999974 4556677789999886532110 000 0 00
Q ss_pred c--------------cCCC-----------CChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh-----
Q psy3476 401 S--------------EKLD-----------PGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE----- 450 (1417)
Q Consensus 401 ~--------------~~~~-----------~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~----- 450 (1417)
. .... .......+..+. .+....--+++|||-+++.|++.++.|....-
T Consensus 519 ~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin-~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~E 597 (1248)
T KOG0947|consen 519 DARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLIN-HLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKE 597 (1248)
T ss_pred cccccccccccCCcCCCCCCCcccccccccccccchHHHHHH-HHhhcccCceEEEEEccccHHHHHHHHhccCcccchh
Confidence 0 0000 000001233332 22223445899999999999999999864210
Q ss_pred -----------------cc------------CCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEE
Q psy3476 451 -----------------KS------------QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 451 -----------------~~------------~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~ 501 (1417)
.. -.-.+..+|||+-+--+.-|+..|..|.+||++||-++++|||.|+.++
T Consensus 598 KseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtv 677 (1248)
T KOG0947|consen 598 KSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTV 677 (1248)
T ss_pred HHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeE
Confidence 00 0124778899999999999999999999999999999999999999999
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEE 554 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~ 554 (1417)
|+++-. ..|.. ....+...+|.||+|||||.| .|.++.+....
T Consensus 678 VF~Sl~----KhDG~------efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 678 VFSSLR----KHDGN------EFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred Eeeehh----hccCc------ceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 998432 23322 123467789999999999999 59988776543
No 93
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1.1e-20 Score=239.11 Aligned_cols=167 Identities=21% Similarity=0.262 Sum_probs=123.1
Q ss_pred cEEEEccCCC--HHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEE
Q psy3476 353 KIILMSATIN--IELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLI 430 (1417)
Q Consensus 353 qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLV 430 (1417)
++.+||.|.- .+.|.+.+ +..++.+|.. .|..-...+...... .......++..+.+.. ..+.++||
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y--~l~v~~IPt~-kp~~r~d~~~~i~~~------~~~K~~al~~~i~~~~--~~~~pvLI 433 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVY--NMEVVQIPTN-RPIIRIDYPDKVFVT------LDEKYKAVIEEVKERH--ETGRPVLI 433 (790)
T ss_pred HHhccCCCChHHHHHHHHHh--CCcEEECCCC-CCcccccCCCeEEcC------HHHHHHHHHHHHHHHH--hcCCCEEE
Confidence 7889999983 34566665 5677777643 222211111110000 0112334445554432 24678999
Q ss_pred EeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCc---CCeE-----EE
Q psy3476 431 FMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITI---DGIR-----FV 502 (1417)
Q Consensus 431 Fl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdI---P~V~-----~V 502 (1417)
||+|++.++.+++.|.+ .++.+..+||.+.++++..+...+..| +|+||||+|+||+|| |+|. +|
T Consensus 434 f~~t~~~se~l~~~L~~-----~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~V 506 (790)
T PRK09200 434 GTGSIEQSETFSKLLDE-----AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAV 506 (790)
T ss_pred EeCcHHHHHHHHHHHHH-----CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEE
Confidence 99999999999999987 678999999999999999888888877 799999999999999 7998 99
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
|+ ||.|.+...|. ||+|||||.| +|.++.+++.++
T Consensus 507 I~--------~d~p~s~r~y~----------qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 507 IG--------TERMESRRVDL----------QLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred Ee--------ccCCCCHHHHH----------HhhccccCCCCCeeEEEEEcchH
Confidence 99 88887655555 9999999999 899999988654
No 94
>PRK09401 reverse gyrase; Reviewed
Probab=99.87 E-value=8.6e-21 Score=251.59 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=73.6
Q ss_pred CcEEEEeCCHHH---HHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEe----cchhhccCCcCC
Q psy3476 426 GDVLIFMSGISE---ISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS----TNIAETSITIDG 498 (1417)
Q Consensus 426 g~iLVFl~~~~e---ie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVA----TnIae~GIdIP~ 498 (1417)
.++||||+++.. ++.+++.|.. .++.+..+||+| + +.++.|++|+.+|||| ||+++||||+|+
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~-----~gi~v~~~hg~l----~-~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~ 398 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLED-----LGINAELAISGF----E-RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPE 398 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHH-----CCCcEEEEeCcH----H-HHHHHHHCCCCCEEEEecCCCCceeecCCCCc
Confidence 579999999777 9999999987 689999999999 2 2359999999999999 699999999999
Q ss_pred -eEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCC
Q psy3476 499 -IRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540 (1417)
Q Consensus 499 -V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAG 540 (1417)
|+|||+ ||.|.---++. -...+.||.||+-
T Consensus 399 ~IryVI~--------y~vP~~~~~~~----~~~~~~~~~~r~~ 429 (1176)
T PRK09401 399 RIRYAIF--------YGVPKFKFSLE----EELAPPFLLLRLL 429 (1176)
T ss_pred ceeEEEE--------eCCCCEEEecc----ccccCHHHHHHHH
Confidence 899999 66665111110 1122349999885
No 95
>PRK14701 reverse gyrase; Provisional
Probab=99.86 E-value=1.2e-20 Score=254.93 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=90.7
Q ss_pred CCcEEEEeCCHHHH---HHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEec----chhhccCCcC
Q psy3476 425 RGDVLIFMSGISEI---SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST----NIAETSITID 497 (1417)
Q Consensus 425 ~g~iLVFl~~~~ei---e~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVAT----nIae~GIdIP 497 (1417)
+.+.||||++++.+ +.+++.|.+ .++.+..+||+ |..+++.|++|+.+||||| ++++||||+|
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~-----~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP 399 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLE-----DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLP 399 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHH-----CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccC
Confidence 35789999998764 788998887 68999999995 8899999999999999999 5999999999
Q ss_pred C-eEEEEcCCcccceecccCC---Cccccceee---cCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 498 G-IRFVVDSGKVKEMSYDVTA---KMSTLQEFW---ISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 498 ~-V~~VIdsG~~k~~~yD~~~---~~~~l~~~~---ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
+ |+|||+ ||.|. ++..+.... .......++.|||||.| ++.|+..+..++...+
T Consensus 400 ~~Vryvi~--------~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~ 461 (1638)
T PRK14701 400 ERIRFAVF--------YGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFL 461 (1638)
T ss_pred CccCEEEE--------eCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHH
Confidence 9 999999 66665 333222110 01234567889999999 7888766666655543
No 96
>KOG0337|consensus
Probab=99.86 E-value=5.2e-21 Score=217.60 Aligned_cols=226 Identities=19% Similarity=0.245 Sum_probs=170.8
Q ss_pred ccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHH--HHHHHh
Q psy3476 293 HGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIE--LFHTYF 370 (1417)
Q Consensus 293 ~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~--~~~~~f 370 (1417)
|+|++++||+++.|+.+++. ..|+.+.+||+||++ |.+..+|...+-+.+.+.+.+.|.++||||++.. .|++-=
T Consensus 140 npDii~ATpgr~~h~~vem~--l~l~sveyVVfdEad-rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaG 216 (529)
T KOG0337|consen 140 NPDIIIATPGRLLHLGVEMT--LTLSSVEYVVFDEAD-RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAG 216 (529)
T ss_pred CCCEEEecCceeeeeehhee--ccccceeeeeehhhh-HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHcc
Confidence 46677778888888877775 668999999999999 9999999999999999999999999999999744 333322
Q ss_pred ccCceEEEeC--Ccccc-eeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHh
Q psy3476 371 NRIAKIIKVP--GRLYP-IQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQE 447 (1417)
Q Consensus 371 ~~~~~vi~v~--gr~~p-v~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~ 447 (1417)
..++..+.++ .+..+ ++..+.... .......++..+.... ...+.+||++|+..++.+...++.
T Consensus 217 l~~p~lVRldvetkise~lk~~f~~~~----------~a~K~aaLl~il~~~~---~~~~t~vf~~tk~hve~~~~ll~~ 283 (529)
T KOG0337|consen 217 LVPPVLVRLDVETKISELLKVRFFRVR----------KAEKEAALLSILGGRI---KDKQTIVFVATKHHVEYVRGLLRD 283 (529)
T ss_pred CCCCceEEeehhhhcchhhhhheeeec----------cHHHHHHHHHHHhccc---cccceeEEecccchHHHHHHHHHh
Confidence 1122222211 11000 000000000 0011122222332222 245799999999999999999987
Q ss_pred hhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeec
Q psy3476 448 YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWI 527 (1417)
Q Consensus 448 ~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~I 527 (1417)
.++.+-.++|.|.+..|..-+..|..++-.++|.|++|++|+|||...-||| ||.|.....+.
T Consensus 284 -----~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin--------yd~p~~~klFv---- 346 (529)
T KOG0337|consen 284 -----FGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN--------YDFPPDDKLFV---- 346 (529)
T ss_pred -----cCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc--------ccCCCCCceEE----
Confidence 6778888999999999999999999999999999999999999999999999 99999888888
Q ss_pred CHhhHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 528 SKASAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 528 Skasa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
||.||+.|.| .|..|.++..++..
T Consensus 347 ------hRVgr~aragrtg~aYs~V~~~~~~ 371 (529)
T KOG0337|consen 347 ------HRVGRVARAGRTGRAYSLVASTDDP 371 (529)
T ss_pred ------EEecchhhccccceEEEEEecccch
Confidence 9999999999 79999998776543
No 97
>PRK09694 helicase Cas3; Provisional
Probab=99.85 E-value=4e-20 Score=237.91 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=82.3
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHH----HHhccC-CCCC---ce
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD----RVFHYA-PEGL---RK 482 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~----~v~~~f-~~G~---rk 482 (1417)
.+++.+.+.. ..++++||||||++.++.+++.|++... ....+..+||.++..+|. ++++.| ++|+ .+
T Consensus 548 ~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~--~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ 623 (878)
T PRK09694 548 TLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNN--TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGR 623 (878)
T ss_pred HHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCe
Confidence 3444444433 3467899999999999999999986321 246799999999999994 566677 6676 47
Q ss_pred EEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 483 VLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
|||||+++|+||||+ ++++|. ... +.+++.||+||+||.+
T Consensus 624 ILVaTQViE~GLDId-~DvlIt--------dla------------PidsLiQRaGR~~R~~ 663 (878)
T PRK09694 624 ILVATQVVEQSLDLD-FDWLIT--------QLC------------PVDLLFQRLGRLHRHH 663 (878)
T ss_pred EEEECcchhheeecC-CCeEEE--------CCC------------CHHHHHHHHhccCCCC
Confidence 999999999999995 677775 222 2346669999999986
No 98
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.85 E-value=4.1e-20 Score=235.95 Aligned_cols=227 Identities=16% Similarity=0.213 Sum_probs=146.9
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchH-----HHHHHHHhccCCCCcEEEEccCCCHHHHHHH
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFL-----LGVIKCLLHSTAEVKIILMSATINIELFHTY 369 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~l-----l~llk~l~~~r~~~qvIlmSATln~~~~~~~ 369 (1417)
++++||+..++ ..++++++|||||+|+-+...+-. ..+ ........+.++|++|||++.+.+...
T Consensus 243 ~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~~ra~~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 243 KVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AVVRAKLENIPVVLGSATPSLESLANA 312 (679)
T ss_pred CEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcHHHH-HHHHhhccCCCEEEEcCCCCHHHHHHH
Confidence 56677777765 457899999999999554433211 111 122233568899999999998887776
Q ss_pred hccCceEEEeCCcc----cceeEEeccccccccc-cccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHH--------
Q psy3476 370 FNRIAKIIKVPGRL----YPIQLEYHPIVELDRT-KSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS-------- 436 (1417)
Q Consensus 370 f~~~~~vi~v~gr~----~pv~v~~~~~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~-------- 436 (1417)
..+....+..+.|. .| .+........... ....+ ...+++.+.+.+ ..+.++|||+|.+.
T Consensus 313 ~~g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~l----s~~l~~~i~~~l--~~g~qvll~~nrrGy~~~~~C~ 385 (679)
T PRK05580 313 QQGRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFL----SPPLLEAIKQRL--ERGEQVLLFLNRRGYAPFLLCR 385 (679)
T ss_pred hccceeEEEeccccccCCCC-eEEEEechhhhhhcccCCC----CHHHHHHHHHHH--HcCCeEEEEEcCCCCCCceEhh
Confidence 55556666666553 22 1222111110000 00111 123444444444 23568999987531
Q ss_pred ----------------------------------------------------HHHHHHHHHHhhhhccCCcEEEEecCCC
Q psy3476 437 ----------------------------------------------------EISSIVRAAQEYNEKSQGWIVLPLHSTL 464 (1417)
Q Consensus 437 ----------------------------------------------------eie~la~~L~~~~~~~~~~~V~~LHs~L 464 (1417)
.++.+++.|.+.. ++..+..+|+++
T Consensus 386 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f---p~~~v~~~~~d~ 462 (679)
T PRK05580 386 DCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF---PEARILRIDRDT 462 (679)
T ss_pred hCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC---CCCcEEEEeccc
Confidence 3455666665543 567899999998
Q ss_pred CH--HHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE--cCCcccceecccCCCccccceeecCHhhHHhhcCcCC
Q psy3476 465 SL--EEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV--DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540 (1417)
Q Consensus 465 s~--~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI--dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAG 540 (1417)
.. ++++++++.|++|+..|||+|+++++|+|+|+|++|+ | .|.......|...--.-+.+.|++||||
T Consensus 463 ~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~--------aD~~l~~pdfra~Er~~~~l~q~~GRag 534 (679)
T PRK05580 463 TRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLD--------ADLGLFSPDFRASERTFQLLTQVAGRAG 534 (679)
T ss_pred cccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEc--------CchhccCCccchHHHHHHHHHHHHhhcc
Confidence 74 6789999999999999999999999999999999884 5 5544444443322223356779999999
Q ss_pred CCC-CCeEEE
Q psy3476 541 RTG-PGVCYR 549 (1417)
Q Consensus 541 R~g-~G~cy~ 549 (1417)
|.+ +|.++.
T Consensus 535 R~~~~g~vii 544 (679)
T PRK05580 535 RAEKPGEVLI 544 (679)
T ss_pred CCCCCCEEEE
Confidence 977 799884
No 99
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.84 E-value=1.9e-19 Score=224.52 Aligned_cols=168 Identities=18% Similarity=0.216 Sum_probs=123.6
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++.+||.|. ..+.|.+.+ +.+++.+|... |+.-...|...... ....+..+++.+.+.+ ..+.++|
T Consensus 341 ~kl~GmTGTa~te~~E~~~iY--~l~vv~IPtnk-p~~R~d~~d~i~~t------~~~k~~ai~~~i~~~~--~~grpvL 409 (745)
T TIGR00963 341 EKLSGMTGTAKTEEEEFEKIY--NLEVVVVPTNR-PVIRKDLSDLVYKT------EEEKWKAVVDEIKERH--AKGQPVL 409 (745)
T ss_pred chhhccCCCcHHHHHHHHHHh--CCCEEEeCCCC-CeeeeeCCCeEEcC------HHHHHHHHHHHHHHHH--hcCCCEE
Confidence 4788999999 345677776 56677777432 22211111111000 0112344555554443 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCC-------eEEE
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDG-------IRFV 502 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~-------V~~V 502 (1417)
|||++.+.++.+++.|.+ .++....+||. +.+|+..+..|+.+...|+||||+|+||+||+. ..+|
T Consensus 410 V~t~si~~se~ls~~L~~-----~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~V 482 (745)
T TIGR00963 410 VGTTSVEKSELLSNLLKE-----RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYV 482 (745)
T ss_pred EEeCcHHHHHHHHHHHHH-----cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEE
Confidence 999999999999999987 67888999999 788999999999999999999999999999998 4499
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
|+ |+.|.+. ..+.||+||+||.| ||.+..+++.++
T Consensus 483 I~--------t~~p~s~----------ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 483 IG--------TERHESR----------RIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred Ee--------cCCCCcH----------HHHHHHhccccCCCCCcceEEEEeccH
Confidence 98 6666544 44559999999999 899988887664
No 100
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=1.1e-19 Score=228.12 Aligned_cols=107 Identities=15% Similarity=0.202 Sum_probs=89.2
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC-CceEEEecchhhccCCcCCeEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG-LRKCIVSTNIAETSITIDGIRFV 502 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G-~rkVLVATnIae~GIdIP~V~~V 502 (1417)
.+.++||||.....+..+++.|. +..+||++++.+|.++++.|+.| ..++||+|+++.+|||+|++++|
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~----------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vv 564 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG----------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVL 564 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC----------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEE
Confidence 46799999999998888877662 34589999999999999999875 78999999999999999999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCC-CeE-------EEecCHHHHH
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP-GVC-------YRLYSEEQYS 557 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~-G~c-------y~L~t~~~~~ 557 (1417)
|. ++.+.+ |+.++.||.||++|.++ |.+ |.|++++..+
T Consensus 565 I~--------~s~~~g---------S~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 565 IQ--------ISSHYG---------SRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred EE--------eCCCCC---------CHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 98 766532 67778899999999985 444 8888765443
No 101
>KOG0950|consensus
Probab=99.83 E-value=8.4e-20 Score=225.53 Aligned_cols=222 Identities=22% Similarity=0.264 Sum_probs=154.1
Q ss_pred cCCCCccEEEEecCccccc---CcchHHHHHHHHhcc--CCCCcEEEEccCC-CHHHHHHHhccCceEEEeCCcccceeE
Q psy3476 315 NFLSSYDVLVLDEIHERHL---HGDFLLGVIKCLLHS--TAEVKIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPIQL 388 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l---~~d~ll~llk~l~~~--r~~~qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv~v 388 (1417)
..+..++.||+||.| ... .+..++.++..+... ....|+|+||||+ |.+.+++|+ ++.+....-|+.|...
T Consensus 337 g~~~~~g~vvVdElh-mi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L--~A~~y~t~fRPv~L~E 413 (1008)
T KOG0950|consen 337 GRLDFLGMVVVDELH-MIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWL--DAFVYTTRFRPVPLKE 413 (1008)
T ss_pred CCccccCcEEEeeee-eeeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHh--hhhheecccCcccchh
Confidence 456678999999999 221 223344444444332 3447899999999 899999999 4666666677777665
Q ss_pred Eeccccccccc-cc--------------cCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhh----
Q psy3476 389 EYHPIVELDRT-KS--------------EKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYN---- 449 (1417)
Q Consensus 389 ~~~~~~~~~~~-~~--------------~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~---- 449 (1417)
+..+....-.. +. ...+++ .++....+.. .++.++|||||++..++.++..+....
T Consensus 414 ~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD---~~v~L~tet~--~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~ 488 (1008)
T KOG0950|consen 414 YIKPGSLIYESSRNKVLREIANLYSSNLGDEDPD---HLVGLCTETA--PEGSSVLVFCPSKKNCENVASLIAKKVPKHI 488 (1008)
T ss_pred ccCCCcccccchhhHHHHHhhhhhhhhcccCCCc---ceeeehhhhh--hcCCeEEEEcCcccchHHHHHHHHHHhhHhh
Confidence 44332211100 00 000111 1122222222 234569999999999999987654311
Q ss_pred -----------------------------hccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeE
Q psy3476 450 -----------------------------EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 450 -----------------------------~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~ 500 (1417)
...-.+.+..+|+|++.++|+.|+..|++|...|++||++++.|++.|+.+
T Consensus 489 ~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArR 568 (1008)
T KOG0950|consen 489 KSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARR 568 (1008)
T ss_pred hhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcce
Confidence 012345688889999999999999999999999999999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~~ 558 (1417)
|+|-.- .+.....++.+|.||+|||||+| -|.++..+.+.+...
T Consensus 569 VIiraP--------------~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~ 615 (1008)
T KOG0950|consen 569 VIIRAP--------------YVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKR 615 (1008)
T ss_pred eEEeCC--------------ccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhH
Confidence 999622 23344568889999999999999 599999998877654
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.82 E-value=7.7e-19 Score=196.05 Aligned_cols=202 Identities=20% Similarity=0.269 Sum_probs=135.9
Q ss_pred ccEEEEecCcccccCcchHHHH-HHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCccc----ceeEEecccc
Q psy3476 320 YDVLVLDEIHERHLHGDFLLGV-IKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLY----PIQLEYHPIV 394 (1417)
Q Consensus 320 ~~~VIlDEaHER~l~~d~ll~l-lk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~----pv~v~~~~~~ 394 (1417)
++++||||+|--.+..|-.+.+ .+.. ....--.|.||||.+-+.-.+...++...+.++.|.+ |+.-...-..
T Consensus 203 FD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~ 280 (441)
T COG4098 203 FDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGN 280 (441)
T ss_pred ccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEecc
Confidence 6789999999555555543332 2222 2345678999999987777777766777788886643 2221111000
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
-.......++ ..++..+|.+.. ..+.++|||+|+.+..+.+++.|+... +...+...||. .+.|.+..+
T Consensus 281 ~~k~l~r~kl----~~kl~~~lekq~--~~~~P~liF~p~I~~~eq~a~~lk~~~---~~~~i~~Vhs~--d~~R~EkV~ 349 (441)
T COG4098 281 WNKKLQRNKL----PLKLKRWLEKQR--KTGRPVLIFFPEIETMEQVAAALKKKL---PKETIASVHSE--DQHRKEKVE 349 (441)
T ss_pred HHHHhhhccC----CHHHHHHHHHHH--hcCCcEEEEecchHHHHHHHHHHHhhC---Cccceeeeecc--CccHHHHHH
Confidence 0001111111 124555665554 346799999999999999999996533 55677888987 356888889
Q ss_pred cCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC--C-CeEEEe
Q psy3476 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG--P-GVCYRL 550 (1417)
Q Consensus 475 ~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g--~-G~cy~L 550 (1417)
.|++|+.++|++|.|+|||||+|+|.++|- +.... -.|+++..|.+||+||.- | |..+-+
T Consensus 350 ~fR~G~~~lLiTTTILERGVTfp~vdV~Vl---------gaeh~-------vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 350 AFRDGKITLLITTTILERGVTFPNVDVFVL---------GAEHR-------VFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred HHHcCceEEEEEeehhhcccccccceEEEe---------cCCcc-------cccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 999999999999999999999999987763 11111 136788889999999976 3 765433
No 103
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=1.5e-19 Score=223.27 Aligned_cols=225 Identities=14% Similarity=0.208 Sum_probs=147.4
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHH----HHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV----IKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~l----lk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
++++||+..++ ..+.++++|||||+|+-+...+-...+ +........+.++|++|||+..+.+....
T Consensus 78 ~IVVGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~ 148 (505)
T TIGR00595 78 LVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAK 148 (505)
T ss_pred CEEECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHh
Confidence 46777877776 457899999999999555433211100 11222334688999999999988877766
Q ss_pred ccCceEEEeCCcc----cceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHH---------
Q psy3476 371 NRIAKIIKVPGRL----YPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE--------- 437 (1417)
Q Consensus 371 ~~~~~vi~v~gr~----~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~e--------- 437 (1417)
.+....+..+.|. .| .+........ .....+ ...+++.+.+.+ ..++++|||+|++.-
T Consensus 149 ~g~~~~~~l~~r~~~~~~p-~v~vid~~~~--~~~~~l----s~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 149 QKAYRLLVLTRRVSGRKPP-EVKLIDMRKE--PRQSFL----SPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred cCCeEEeechhhhcCCCCC-eEEEEecccc--cccCCc----cHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhC
Confidence 4444555554332 22 1222111100 000111 223455555554 346789999876542
Q ss_pred ---------------------------------------------------HHHHHHHHHhhhhccCCcEEEEecCCCCH
Q psy3476 438 ---------------------------------------------------ISSIVRAAQEYNEKSQGWIVLPLHSTLSL 466 (1417)
Q Consensus 438 ---------------------------------------------------ie~la~~L~~~~~~~~~~~V~~LHs~Ls~ 466 (1417)
++.+.+.|.+.. ++..+..+|++++.
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f---p~~~v~~~d~d~~~ 296 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF---PGARIARIDSDTTS 296 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC---CCCcEEEEeccccc
Confidence 466667776643 56789999999987
Q ss_pred HHH--HHHhccCCCCCceEEEecchhhccCCcCCeEEEE--cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCC
Q psy3476 467 EEQ--DRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV--DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542 (1417)
Q Consensus 467 ~eR--~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI--dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~ 542 (1417)
.++ +++++.|++|+.+|||+|+++++|+|+|+|+.|+ | +|.......|...--.-+.+.|++|||||.
T Consensus 297 ~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~--------aD~~l~~pd~ra~E~~~~ll~q~~GRagR~ 368 (505)
T TIGR00595 297 RKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD--------ADSGLHSPDFRAAERGFQLLTQVAGRAGRA 368 (505)
T ss_pred CccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------CcccccCcccchHHHHHHHHHHHHhccCCC
Confidence 766 8899999999999999999999999999999774 6 555444444322222335677999999998
Q ss_pred C-CCeEE
Q psy3476 543 G-PGVCY 548 (1417)
Q Consensus 543 g-~G~cy 548 (1417)
+ +|.++
T Consensus 369 ~~~g~vi 375 (505)
T TIGR00595 369 EDPGQVI 375 (505)
T ss_pred CCCCEEE
Confidence 7 79887
No 104
>KOG0352|consensus
Probab=99.82 E-value=1.3e-19 Score=205.63 Aligned_cols=212 Identities=18% Similarity=0.207 Sum_probs=151.2
Q ss_pred CccEEEEecCcccccCc-chHHHHHHH--HhccCCCCcEEEEccCCCHHHHHHHhc---cCceEEEeCCcccceeEEecc
Q psy3476 319 SYDVLVLDEIHERHLHG-DFLLGVIKC--LLHSTAEVKIILMSATINIELFHTYFN---RIAKIIKVPGRLYPIQLEYHP 392 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~-d~ll~llk~--l~~~r~~~qvIlmSATln~~~~~~~f~---~~~~vi~v~gr~~pv~v~~~~ 392 (1417)
.+.++|+||||.-+-++ ||..++++. +...-++..-+.++||.+.+.-.+.+. -.-|+-......|.-.++|.-
T Consensus 141 ~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~ 220 (641)
T KOG0352|consen 141 VLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDN 220 (641)
T ss_pred eeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHH
Confidence 35789999999766555 777777664 444557889999999997654333331 112221111112222222211
Q ss_pred ccccccccccCCCCChHHHHHHHHHhhC---------CCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCC
Q psy3476 393 IVELDRTKSEKLDPGPYIRILSIIDKKY---------PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHST 463 (1417)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~il~~l~~~~---------~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~ 463 (1417)
... .+-.+++..+.+.-.+.+ ++...|--||+|.|+++++.++-.|.. .++....+|+|
T Consensus 221 ~~K-------~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~-----~Gi~A~AYHAG 288 (641)
T KOG0352|consen 221 HMK-------SFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEI-----AGIPAMAYHAG 288 (641)
T ss_pred HHH-------HHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhh-----cCcchHHHhcc
Confidence 100 000112222222222221 123357789999999999999998876 78899999999
Q ss_pred CCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 464 LSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 464 Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
|...||..|.+...+|+..||+||+...+|||-|+|++||+ ||++.++..|. |-.|||||.|
T Consensus 289 LK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~~~qn~AgYY----------QESGRAGRDG 350 (641)
T KOG0352|consen 289 LKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH--------WSPSQNLAGYY----------QESGRAGRDG 350 (641)
T ss_pred cccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe--------cCchhhhHHHH----------HhccccccCC
Confidence 99999999999999999999999999999999999999999 99998877776 9999999999
Q ss_pred -CCeEEEecCHHHHHHhh
Q psy3476 544 -PGVCYRLYSEEQYSLLA 560 (1417)
Q Consensus 544 -~G~cy~L~t~~~~~~l~ 560 (1417)
+..|-..|++++.+.+.
T Consensus 351 k~SyCRLYYsR~D~~~i~ 368 (641)
T KOG0352|consen 351 KRSYCRLYYSRQDKNALN 368 (641)
T ss_pred CccceeeeecccchHHHH
Confidence 89998889988877544
No 105
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.81 E-value=1.7e-18 Score=230.24 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=68.3
Q ss_pred CCcEEEEeCCH---HHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEe----cchhhccCCcC
Q psy3476 425 RGDVLIFMSGI---SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS----TNIAETSITID 497 (1417)
Q Consensus 425 ~g~iLVFl~~~---~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVA----TnIae~GIdIP 497 (1417)
++++||||+++ +.++.+++.|.+ .++.+..+||+++. .+++.|++|+.+|||| ||+++||||||
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~-----~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip 396 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLEN-----HGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLP 396 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHh-----CCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCC
Confidence 35789999999 999999999987 67899999999973 6889999999999999 59999999999
Q ss_pred C-eEEEEcCCcccceecccCC
Q psy3476 498 G-IRFVVDSGKVKEMSYDVTA 517 (1417)
Q Consensus 498 ~-V~~VIdsG~~k~~~yD~~~ 517 (1417)
+ |+|||+ ||.|.
T Consensus 397 ~~V~~vI~--------~~~P~ 409 (1171)
T TIGR01054 397 ERVRYAVF--------LGVPK 409 (1171)
T ss_pred ccccEEEE--------ECCCC
Confidence 9 899999 77775
No 106
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.81 E-value=1.1e-18 Score=212.21 Aligned_cols=199 Identities=20% Similarity=0.257 Sum_probs=140.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCC-CCcEEEEccCCCHHHHH-HHhcc-CceEE-EeCCcccceeEEe
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-EVKIILMSATINIELFH-TYFNR-IAKII-KVPGRLYPIQLEY 390 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~-~~qvIlmSATln~~~~~-~~f~~-~~~vi-~v~gr~~pv~v~~ 390 (1417)
-.+.++.+||+||=| | |.-.--..+..... ...++.||||+=+..++ ..|++ +..+| ..|....|+....
T Consensus 380 V~F~~LgLVIiDEQH-R-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~ 453 (677)
T COG1200 380 VEFHNLGLVIIDEQH-R-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVV 453 (677)
T ss_pred eeecceeEEEEeccc-c-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEE
Confidence 357789999999999 4 22111222333334 57899999999444443 45532 22222 3444446777766
Q ss_pred ccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHH--------HHHHHHHhhhhccCCcEEEEecC
Q psy3476 391 HPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEIS--------SIVRAAQEYNEKSQGWIVLPLHS 462 (1417)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie--------~la~~L~~~~~~~~~~~V~~LHs 462 (1417)
.+... ...+++.|.+.+ ..+.++.|-||-.++.+ .+++.|+.. .+++.+..+||
T Consensus 454 i~~~~-------------~~~v~e~i~~ei--~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~---~~~~~vgL~HG 515 (677)
T COG1200 454 IPHER-------------RPEVYERIREEI--AKGRQAYVVCPLIEESEKLELQAAEELYEELKSF---LPELKVGLVHG 515 (677)
T ss_pred ecccc-------------HHHHHHHHHHHH--HcCCEEEEEeccccccccchhhhHHHHHHHHHHH---cccceeEEEec
Confidence 55422 234555555554 34778999999776654 344444432 36788999999
Q ss_pred CCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCC
Q psy3476 463 TLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542 (1417)
Q Consensus 463 ~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~ 542 (1417)
.|+.++++.|++.|++|+.+|+|||++.|-|||+|+.++.|- +|+.+ + --|+..|-+||+||.
T Consensus 516 rm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI--------e~AER----F-----GLaQLHQLRGRVGRG 578 (677)
T COG1200 516 RMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI--------ENAER----F-----GLAQLHQLRGRVGRG 578 (677)
T ss_pred CCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE--------echhh----h-----hHHHHHHhccccCCC
Confidence 999999999999999999999999999999999999998875 55443 2 245677999999998
Q ss_pred C-CCeEEEecCHH
Q psy3476 543 G-PGVCYRLYSEE 554 (1417)
Q Consensus 543 g-~G~cy~L~t~~ 554 (1417)
+ ++.|+.+|...
T Consensus 579 ~~qSyC~Ll~~~~ 591 (677)
T COG1200 579 DLQSYCVLLYKPP 591 (677)
T ss_pred CcceEEEEEeCCC
Confidence 8 89999998643
No 107
>KOG0351|consensus
Probab=99.77 E-value=3.7e-18 Score=219.18 Aligned_cols=206 Identities=23% Similarity=0.275 Sum_probs=153.4
Q ss_pred ccEEEEecCcccccCc-chHHHHHHH--HhccCCCCcEEEEccCCCHH---HHHHHhc-cCceEEEeCCcccceeEEecc
Q psy3476 320 YDVLVLDEIHERHLHG-DFLLGVIKC--LLHSTAEVKIILMSATINIE---LFHTYFN-RIAKIIKVPGRLYPIQLEYHP 392 (1417)
Q Consensus 320 ~~~VIlDEaHER~l~~-d~ll~llk~--l~~~r~~~qvIlmSATln~~---~~~~~f~-~~~~vi~v~gr~~pv~v~~~~ 392 (1417)
+..+||||||.-+-++ ||...+.+. +....+...+|.++||.... ++.+-++ .++.++... ..+-.++|.-
T Consensus 386 lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s--fnR~NL~yeV 463 (941)
T KOG0351|consen 386 LALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS--FNRPNLKYEV 463 (941)
T ss_pred eEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc--CCCCCceEEE
Confidence 7899999999666555 677766543 34445668999999999543 4444442 234433221 1111122211
Q ss_pred ccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHH
Q psy3476 393 IVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRV 472 (1417)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v 472 (1417)
.... +.+....+...+... .+.+..||+|.++.+|+.++..|+. .++....+|+||+..+|..|
T Consensus 464 ~~k~--------~~~~~~~~~~~~~~~---~~~~s~IIYC~sr~~ce~vs~~L~~-----~~~~a~~YHAGl~~~~R~~V 527 (941)
T KOG0351|consen 464 SPKT--------DKDALLDILEESKLR---HPDQSGIIYCLSRKECEQVSAVLRS-----LGKSAAFYHAGLPPKERETV 527 (941)
T ss_pred Eecc--------CccchHHHHHHhhhc---CCCCCeEEEeCCcchHHHHHHHHHH-----hchhhHhhhcCCCHHHHHHH
Confidence 1111 011223333334333 4567899999999999999999988 56889999999999999999
Q ss_pred hccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEec
Q psy3476 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLY 551 (1417)
Q Consensus 473 ~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~ 551 (1417)
.+.|-.++.+|||||=.+.+|||.|||++||+ |..|..++.|. |-+|||||.| +..|..+|
T Consensus 528 q~~w~~~~~~VivATVAFGMGIdK~DVR~ViH--------~~lPks~E~YY----------QE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 528 QKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH--------YSLPKSFEGYY----------QEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred HHHHhcCCCeEEEEEeeccCCCCCCceeEEEE--------CCCchhHHHHH----------HhccccCcCCCcceeEEec
Confidence 99999999999999999999999999999999 88898888887 9999999999 89999999
Q ss_pred CHHHHHHhhc
Q psy3476 552 SEEQYSLLAE 561 (1417)
Q Consensus 552 t~~~~~~l~~ 561 (1417)
...++..+..
T Consensus 590 ~~~D~~~l~~ 599 (941)
T KOG0351|consen 590 GYADISELRR 599 (941)
T ss_pred chhHHHHHHH
Confidence 9998876553
No 108
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.77 E-value=1.3e-17 Score=203.78 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=83.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
.+.+++||+...+++..++..+.. ++. +..+.+..+..+|..+++.|+.|.+++||++.++..|+|+|++.++|
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~-----~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i 355 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLA-----PGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLI 355 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcC-----CCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEE
Confidence 356899999999999999999875 444 88899999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
. -.+ + -|+..+.||+||.=|..
T Consensus 356 ~--------~~~-t---------~S~~~~~Q~lGR~LR~~ 377 (442)
T COG1061 356 I--------LRP-T---------GSRRLFIQRLGRGLRPA 377 (442)
T ss_pred E--------eCC-C---------CcHHHHHHHhhhhccCC
Confidence 6 222 2 26677789999999954
No 109
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=8e-17 Score=202.94 Aligned_cols=168 Identities=20% Similarity=0.280 Sum_probs=122.8
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++-+||.|. ..+.|.+.+ +.+++.+|... |..-...|...... ....+..+++.+.... ..+.++|
T Consensus 376 ~kl~GmTGTa~~e~~Ef~~iY--~l~vv~IPtnk-p~~r~d~~d~i~~t------~~~K~~al~~~i~~~~--~~g~pvL 444 (796)
T PRK12906 376 KKLSGMTGTAKTEEEEFREIY--NMEVITIPTNR-PVIRKDSPDLLYPT------LDSKFNAVVKEIKERH--AKGQPVL 444 (796)
T ss_pred chhhccCCCCHHHHHHHHHHh--CCCEEEcCCCC-CeeeeeCCCeEEcC------HHHHHHHHHHHHHHHH--hCCCCEE
Confidence 3788999999 345666666 56677777532 32222111111000 0112334555554433 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCc---CCeE-----E
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITI---DGIR-----F 501 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdI---P~V~-----~ 501 (1417)
|||++.+.++.+++.|.+ .++....||+.+...++..+-+++++|. |+||||+|+||.|| ++|. +
T Consensus 445 I~t~si~~se~ls~~L~~-----~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLh 517 (796)
T PRK12906 445 VGTVAIESSERLSHLLDE-----AGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLA 517 (796)
T ss_pred EEeCcHHHHHHHHHHHHH-----CCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcE
Confidence 999999999999999987 6788999999999999999999998886 99999999999999 4899 9
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
||+ ++.|.+.. .+.||.|||||.| ||.+..+++-++
T Consensus 518 VI~--------te~pes~r----------i~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 518 VIG--------TERHESRR----------IDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred EEe--------eecCCcHH----------HHHHHhhhhccCCCCcceEEEEeccc
Confidence 998 66665444 4559999999999 899987777653
No 110
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=8.3e-17 Score=203.53 Aligned_cols=128 Identities=13% Similarity=0.114 Sum_probs=93.8
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.|+-+||.|. ..+.|.+.+ +..++.+|... |+.-...|..... .....+..+++.+.+.+ ..+.++|
T Consensus 380 ~kLsGMTGTa~te~~Ef~~iY--~l~Vv~IPtnk-p~~R~d~~d~v~~------t~~~k~~av~~~i~~~~--~~g~PVL 448 (896)
T PRK13104 380 NKLSGMTGTADTEAYEFQQIY--NLEVVVIPTNR-SMIRKDEADLVYL------TQADKFQAIIEDVRECG--VRKQPVL 448 (896)
T ss_pred chhccCCCCChhHHHHHHHHh--CCCEEECCCCC-CcceecCCCeEEc------CHHHHHHHHHHHHHHHH--hCCCCEE
Confidence 4788999999 355777777 56777777532 2221111111000 00112445556565544 3577999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
|||++.+.++.+++.|.+ .++....||+.+.+.++..+.++|++|. |+||||+|+||+||-
T Consensus 449 Vgt~Sie~sE~ls~~L~~-----~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~ 509 (896)
T PRK13104 449 VGTVSIEASEFLSQLLKK-----ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIV 509 (896)
T ss_pred EEeCcHHHHHHHHHHHHH-----cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCccee
Confidence 999999999999999988 7889999999999999999999999994 999999999999985
No 111
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.72 E-value=2.8e-16 Score=207.96 Aligned_cols=117 Identities=22% Similarity=0.303 Sum_probs=87.8
Q ss_pred HHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh----ccCCcEEEEecCCCCHHHHHHHhccCCCCCc-eEEEecchh
Q psy3476 416 IDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE----KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR-KCIVSTNIA 490 (1417)
Q Consensus 416 l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~----~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~r-kVLVATnIa 490 (1417)
+.+.+....++++||||.++++++.+++.|.+... ......+..+||+.+ ++..+++.|+++.. +|+|+++++
T Consensus 689 l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL 766 (1123)
T PRK11448 689 LAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLL 766 (1123)
T ss_pred HHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEeccc
Confidence 33334333458999999999999999998876432 112235667888875 46779999999876 799999999
Q ss_pred hccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCC--Ce-EEEecC
Q psy3476 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP--GV-CYRLYS 552 (1417)
Q Consensus 491 e~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~--G~-cy~L~t 552 (1417)
.+|+|+|.|.+||. ++++. |+..|.||+||+.|..+ |+ ++.++.
T Consensus 767 ~TG~DvP~v~~vVf--------~rpvk----------S~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 767 TTGIDVPSICNLVF--------LRRVR----------SRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred ccCCCcccccEEEE--------ecCCC----------CHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 99999999999997 55554 55666799999999876 44 344444
No 112
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.71 E-value=5.2e-16 Score=198.20 Aligned_cols=196 Identities=21% Similarity=0.232 Sum_probs=147.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhc--cCceEEEeC-CcccceeEEec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN--RIAKIIKVP-GRLYPIQLEYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~--~~~~vi~v~-gr~~pv~v~~~ 391 (1417)
-.+.+++++||||-| | |.-.--..+..++.++-++-||||+=+..+.--+. .+..+|..| .+.+||..+..
T Consensus 712 v~FkdLGLlIIDEEq-R-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~ 785 (1139)
T COG1197 712 VKFKDLGLLIIDEEQ-R-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVS 785 (1139)
T ss_pred cEEecCCeEEEechh-h-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEe
Confidence 457899999999999 3 22223344556678999999999994444432221 244555544 56688888776
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
+.... .+-+.|.+.+ ..+|++-.-.|..+.|+.+++.|+++- +...+...||.|+..+-+.
T Consensus 786 ~~d~~--------------~ireAI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LV---PEarI~vaHGQM~e~eLE~ 846 (1139)
T COG1197 786 EYDDL--------------LIREAILREL--LRGGQVFYVHNRVESIEKKAERLRELV---PEARIAVAHGQMRERELEE 846 (1139)
T ss_pred cCChH--------------HHHHHHHHHH--hcCCEEEEEecchhhHHHHHHHHHHhC---CceEEEEeecCCCHHHHHH
Confidence 54321 2333444443 348999999999999999999999866 6678999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceeccc-CCCccccceeecCHhhHHhhcCcCCCCC-CCeEEE
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDV-TAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYR 549 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~-~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~ 549 (1417)
++..|-+|...|||||.|.|+|||||+++-+|- .+. .-| -|+..|.+||+||.. .|+||.
T Consensus 847 vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII--------e~AD~fG----------LsQLyQLRGRVGRS~~~AYAYf 908 (1139)
T COG1197 847 VMLDFYNGEYDVLVCTTIIETGIDIPNANTIII--------ERADKFG----------LAQLYQLRGRVGRSNKQAYAYF 908 (1139)
T ss_pred HHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------ecccccc----------HHHHHHhccccCCccceEEEEE
Confidence 999999999999999999999999999976663 111 123 355669999999998 699999
Q ss_pred ecCH
Q psy3476 550 LYSE 553 (1417)
Q Consensus 550 L~t~ 553 (1417)
+|..
T Consensus 909 l~p~ 912 (1139)
T COG1197 909 LYPP 912 (1139)
T ss_pred eecC
Confidence 9975
No 113
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=4.2e-16 Score=197.21 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=92.8
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++.+||.|. ..+.|.+.+ +..++.+|... |+.-...|...... ....+..++..+.+.+ ..+.++|
T Consensus 366 ~kl~GmTGTa~te~~E~~~iY--~l~vv~IPtnk-p~~r~d~~d~i~~t------~~~K~~aI~~~I~~~~--~~grpVL 434 (830)
T PRK12904 366 EKLAGMTGTADTEAEEFREIY--NLDVVVIPTNR-PMIRIDHPDLIYKT------EKEKFDAVVEDIKERH--KKGQPVL 434 (830)
T ss_pred chhcccCCCcHHHHHHHHHHh--CCCEEEcCCCC-CeeeeeCCCeEEEC------HHHHHHHHHHHHHHHH--hcCCCEE
Confidence 3788999999 355677766 56777777532 33222222111100 0112345555555443 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
|||++.+.++.+++.|.+ .++....|||. +.+|+..+..|+.+...|+||||+|+||+||+
T Consensus 435 Ift~Si~~se~Ls~~L~~-----~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 435 VGTVSIEKSELLSKLLKK-----AGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred EEeCcHHHHHHHHHHHHH-----CCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 999999999999999987 67889999996 78899999999999999999999999999997
No 114
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=1.9e-15 Score=190.80 Aligned_cols=128 Identities=17% Similarity=0.120 Sum_probs=92.9
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++-+||.|. ....|.+.+ +..++.+|... |+.-...+..... -....+..+++.+.+.+ ..+.+||
T Consensus 385 ~kL~GMTGTa~te~~Ef~~iY--~l~Vv~IPTnk-p~~R~d~~d~iy~------t~~~K~~Aii~ei~~~~--~~GrpVL 453 (908)
T PRK13107 385 EKLAGMTGTADTEAFEFQHIY--GLDTVVVPTNR-PMVRKDMADLVYL------TADEKYQAIIKDIKDCR--ERGQPVL 453 (908)
T ss_pred hHhhcccCCChHHHHHHHHHh--CCCEEECCCCC-CccceeCCCcEEe------CHHHHHHHHHHHHHHHH--HcCCCEE
Confidence 3788999998 344666666 56677777432 2211111111000 00122445666665554 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
|||++.+.++.+++.|.. .++....||+..+..++..+.++++.|. |+||||+|+||.||-
T Consensus 454 V~t~sv~~se~ls~~L~~-----~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIk 514 (908)
T PRK13107 454 VGTVSIEQSELLARLMVK-----EKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIV 514 (908)
T ss_pred EEeCcHHHHHHHHHHHHH-----CCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCccee
Confidence 999999999999999987 6788999999999999999999999998 999999999999985
No 115
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.64 E-value=7.5e-15 Score=190.70 Aligned_cols=116 Identities=20% Similarity=0.237 Sum_probs=96.1
Q ss_pred HHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC--CceEEEecchhhcc
Q psy3476 416 IDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG--LRKCIVSTNIAETS 493 (1417)
Q Consensus 416 l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G--~rkVLVATnIae~G 493 (1417)
+.+.+....+.++||||++++.+..+++.|+.. .++.+..+||+|++.+|+++.+.|+++ ..+|+|||+++++|
T Consensus 484 L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~----~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseG 559 (956)
T PRK04914 484 LIDFLKSHRSEKVLVICAKAATALQLEQALRER----EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEG 559 (956)
T ss_pred HHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc----cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccC
Confidence 333333344678999999999999999999541 578899999999999999999999874 58999999999999
Q ss_pred CCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCe--EEEecCH
Q psy3476 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGV--CYRLYSE 553 (1417)
Q Consensus 494 IdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~--cy~L~t~ 553 (1417)
+|++.+++||+ ||.|.+...|. ||+||+||.| .|. +|.++.+
T Consensus 560 lNlq~a~~VIn--------fDlP~nP~~~e----------QRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 560 RNFQFASHLVL--------FDLPFNPDLLE----------QRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred CCcccccEEEE--------ecCCCCHHHHH----------HHhcccccCCCCceEEEEEccCC
Confidence 99999999999 99987766655 9999999999 443 4444443
No 116
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.63 E-value=6.1e-15 Score=190.43 Aligned_cols=198 Identities=22% Similarity=0.332 Sum_probs=118.3
Q ss_pred ccEEEEecCcccccCcc-hHHHHHHHHhc-cCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEEecccc
Q psy3476 320 YDVLVLDEIHERHLHGD-FLLGVIKCLLH-STAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLEYHPIV 394 (1417)
Q Consensus 320 ~~~VIlDEaHER~l~~d-~ll~llk~l~~-~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~ 394 (1417)
.+++|+||+| .+..+ .+..++..+.. ...+.++|+||||++.. .+.+++..+..+..... ..|....+.-
T Consensus 339 ~S~vIlDE~h--~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~-~~~~~~e~~~-- 413 (733)
T COG1203 339 TSLVILDEVH--LYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAK-FCPKEDEPGL-- 413 (733)
T ss_pred hhchhhccHH--hhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccc-cccccccccc--
Confidence 5789999999 33333 33333332222 23578999999999743 44555533222221111 0010000000
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
...........+.......+.... .++++++|-|||++.+.++++.|+.. +..+..+||.+...+|.+.++
T Consensus 414 --~~~~~~~~~~~~~~~~~~~~~~~~--~~~~kvlvI~NTV~~Aie~Y~~Lk~~-----~~~v~LlHSRf~~~dR~~ke~ 484 (733)
T COG1203 414 --KRKERVDVEDGPQEELIELISEEV--KEGKKVLVIVNTVDRAIELYEKLKEK-----GPKVLLLHSRFTLKDREEKER 484 (733)
T ss_pred --ccccchhhhhhhhHhhhhcchhhh--ccCCcEEEEEecHHHHHHHHHHHHhc-----CCCEEEEecccchhhHHHHHH
Confidence 000000000000001122222222 45789999999999999999999873 227999999999999998877
Q ss_pred cC----CCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeE
Q psy3476 475 YA----PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVC 547 (1417)
Q Consensus 475 ~f----~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~c 547 (1417)
.. ..+.-.|+|||++.|.||||+ .+++| +...+-.+..||+||.+|.| +|..
T Consensus 485 ~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~ 543 (733)
T COG1203 485 ELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKI 543 (733)
T ss_pred HHHHHHhccCCeEEEEeeEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCce
Confidence 43 456778999999999999997 44444 23334455569999999999 4666
Q ss_pred EEecC
Q psy3476 548 YRLYS 552 (1417)
Q Consensus 548 y~L~t 552 (1417)
|..-.
T Consensus 544 ~v~~~ 548 (733)
T COG1203 544 YVYND 548 (733)
T ss_pred eEeec
Confidence 65443
No 117
>KOG0329|consensus
Probab=99.60 E-value=2.1e-15 Score=162.37 Aligned_cols=170 Identities=24% Similarity=0.336 Sum_probs=115.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCc----ccceeE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGR----LYPIQL 388 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr----~~pv~v 388 (1417)
..|++++++|+||++....+.|....+-.+....+.+.|++.+|||++ ..-...-|..++--+.++.. .+.+..
T Consensus 181 l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ 260 (387)
T KOG0329|consen 181 LNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQ 260 (387)
T ss_pred CchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHH
Confidence 357789999999999666666777777777777888999999999995 33444444343332333221 122223
Q ss_pred EeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHH
Q psy3476 389 EYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEE 468 (1417)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~e 468 (1417)
+|........ ..++.++++. .+-.+++||+.+...+.
T Consensus 261 ~YvkLke~eK----------Nrkl~dLLd~----LeFNQVvIFvKsv~Rl~----------------------------- 297 (387)
T KOG0329|consen 261 YYVKLKENEK----------NRKLNDLLDV----LEFNQVVIFVKSVQRLS----------------------------- 297 (387)
T ss_pred HHHhhhhhhh----------hhhhhhhhhh----hhhcceeEeeehhhhhh-----------------------------
Confidence 3322111110 1122222221 23568999998765411
Q ss_pred HHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeE
Q psy3476 469 QDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVC 547 (1417)
Q Consensus 469 R~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~c 547 (1417)
| ..+ +|||++..+|+||..|+.|+| ||.|.+..+|. ||.|||||.| .|.+
T Consensus 298 -------f---~kr-~vat~lfgrgmdiervNi~~N--------Ydmp~~~DtYl----------Hrv~rAgrfGtkgla 348 (387)
T KOG0329|consen 298 -------F---QKR-LVATDLFGRGMDIERVNIVFN--------YDMPEDSDTYL----------HRVARAGRFGTKGLA 348 (387)
T ss_pred -------h---hhh-hHHhhhhccccCcccceeeec--------cCCCCCchHHH----------HHhhhhhccccccce
Confidence 1 123 899999999999999999999 99998877776 9999999999 7999
Q ss_pred EEecCHHHH
Q psy3476 548 YRLYSEEQY 556 (1417)
Q Consensus 548 y~L~t~~~~ 556 (1417)
+.+.+.+.-
T Consensus 349 itfvs~e~d 357 (387)
T KOG0329|consen 349 ITFVSDEND 357 (387)
T ss_pred eehhcchhh
Confidence 999876544
No 118
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.57 E-value=6.1e-16 Score=151.72 Aligned_cols=91 Identities=24% Similarity=0.282 Sum_probs=64.5
Q ss_pred HHHHHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhccc---------
Q psy3476 871 SSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSL--------- 941 (1417)
Q Consensus 871 ~A~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~--------- 941 (1417)
+|++.|+.+||||++++||++|+.|+.||++|++||||+.|+.++|++++++|||+||.++++..+...+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999998777532211
Q ss_pred --ccccCCCCccCCCCCccccc
Q psy3476 942 --GRFLSDLPVDIPLGKMLVFG 961 (1417)
Q Consensus 942 --~~~~~~~~f~~~~gd~lt~l 961 (1417)
.....+..+.++.|||+|||
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 23456788999999999986
No 119
>KOG0353|consensus
Probab=99.56 E-value=6.2e-14 Score=157.30 Aligned_cols=215 Identities=19% Similarity=0.213 Sum_probs=136.9
Q ss_pred CccEEEEecCcccccCc-chHHHH--HHHHhccCCCCcEEEEccCCCHH---HHHHHhcc-CceEEEeCCcccceeEEec
Q psy3476 319 SYDVLVLDEIHERHLHG-DFLLGV--IKCLLHSTAEVKIILMSATINIE---LFHTYFNR-IAKIIKVPGRLYPIQLEYH 391 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~-d~ll~l--lk~l~~~r~~~qvIlmSATln~~---~~~~~f~~-~~~vi~v~gr~~pv~v~~~ 391 (1417)
-+..|-+||+|.-+-++ ||..++ +..+.+..++..+|+++||.... +..+.+.- .+-.+... .....+.|.
T Consensus 215 ~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~--fnr~nl~ye 292 (695)
T KOG0353|consen 215 FFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG--FNRPNLKYE 292 (695)
T ss_pred eeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc--cCCCCceeE
Confidence 36788899999554443 454333 44555677899999999998322 22222210 11111111 000111111
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
...... ...+....+...|...+ .+..-||||-++++++.++..|+. .++....+|+.|.++++..
T Consensus 293 v~qkp~------n~dd~~edi~k~i~~~f---~gqsgiiyc~sq~d~ekva~alkn-----~gi~a~~yha~lep~dks~ 358 (695)
T KOG0353|consen 293 VRQKPG------NEDDCIEDIAKLIKGDF---AGQSGIIYCFSQKDCEKVAKALKN-----HGIHAGAYHANLEPEDKSG 358 (695)
T ss_pred eeeCCC------ChHHHHHHHHHHhcccc---CCCcceEEEeccccHHHHHHHHHh-----cCccccccccccCcccccc
Confidence 110000 01122344555544333 244569999999999999999987 7888999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCcccccee---------------------ecCH-
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEF---------------------WISK- 529 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~---------------------~ISk- 529 (1417)
+-+..-.|++.|||||-...+|||-|+|++||+ ...|..+..|... -|..
T Consensus 359 ~hq~w~a~eiqvivatvafgmgidkpdvrfvih--------hsl~ksienyyqasarillrmtkqknksdtggstqinil 430 (695)
T KOG0353|consen 359 AHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH--------HSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINIL 430 (695)
T ss_pred ccccccccceEEEEEEeeecccCCCCCeeEEEe--------cccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehh
Confidence 999999999999999999999999999999999 3444444333300 0000
Q ss_pred ----------h-hHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 530 ----------A-SAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 530 ----------a-sa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
+ =.....|||||.+ +..|+..|.-.+..
T Consensus 431 evctnfkiffavfsekesgragrd~~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 431 EVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIF 470 (695)
T ss_pred hhhccceeeeeeecchhccccccCCCcccEEEEechHHHH
Confidence 0 0001689999999 89999888765543
No 120
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.54 E-value=2.3e-15 Score=190.20 Aligned_cols=107 Identities=13% Similarity=0.228 Sum_probs=95.4
Q ss_pred hhhhhHHHhhhccccccCCCcccccccHHHHhhhhcCCccchhhcc---hHHHHHHHHHhcCCCcccCCCCCCCCccchH
Q psy3476 794 IEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVS---IDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 870 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~~~~PEI~r~~---L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~ 870 (1417)
-+|++++.||+|||||++||.||||||++++ .| |+|++ |++++|++|+||++.+ .+.|+|||+.+++.
T Consensus 486 ~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~-------~p-I~ri~~~~L~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~ 556 (675)
T PHA02653 486 FISKSMRTQRKGRVGRVSPGTYVYFYDLDLL-------KP-IKRIDSEFLHNYILYAKYFNLTLP-EDLFVIPSNLDRLR 556 (675)
T ss_pred ccCHHHHHHhccCcCCCCCCeEEEEECHHHh-------HH-HHHHhHHHHHHHHHHHHHcCCCCc-ccccCCCCCHHHHH
Confidence 3799999999999999999999999999875 24 66666 8999999999999655 45599999999999
Q ss_pred HHHHHHhhccccccccccchh--hhhcccCCCCccccchhhhccccc
Q psy3476 871 SSVRSLTQHGAIDSKERVTTL--GRFLSDLPVDIPLGKMLVFGSMFH 915 (1417)
Q Consensus 871 ~A~~~L~~lgald~~~~lT~l--G~~l~~lPvdp~lak~Ll~~~~~~ 915 (1417)
+|++.|..+||+|+ +||.+ |+.|+.+ ++||++++|+...
T Consensus 557 ~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~~~ 597 (675)
T PHA02653 557 KTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGILA 597 (675)
T ss_pred HHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccHhH
Confidence 99999999999876 79999 9999999 9999999986543
No 121
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=3.7e-13 Score=170.51 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC--CcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEEe
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF--QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~--~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ir 117 (1417)
+..+|.+++..+..++.+|..++||+|||..+..+++.... ..+.+..|+|.+|.+.++.+ ..+...+|-+||..+.
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m-~~L~k~lGLsV~~i~G 171 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWV-GSVLRWLGLTTGVLVS 171 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHH-HHHHhhcCCeEEEEeC
Confidence 88899999999999999999999999999987777664432 23556677888888888754 4445567778887654
Q ss_pred ecccc----cCCccEEEEccchh-HHhhcC
Q psy3476 118 FEKHR----REKTKIVFITEGLL-LRQDSG 142 (1417)
Q Consensus 118 ~e~~~----~~~t~I~~~T~g~l-lr~l~~ 142 (1417)
..... .-.+.|+|+|||.| ++.+..
T Consensus 172 G~~~~eq~~~y~~DIVygTPgRLgfDyLrd 201 (970)
T PRK12899 172 GSPLEKRKEIYQCDVVYGTASEFGFDYLRD 201 (970)
T ss_pred CCCHHHHHHHcCCCEEEECCChhHHHHhhC
Confidence 32221 12478999999999 777643
No 122
>KOG0349|consensus
Probab=99.51 E-value=6.7e-14 Score=159.50 Aligned_cols=109 Identities=18% Similarity=0.312 Sum_probs=94.5
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
...+.+|||.|+.+|+.+.+.+++... ..+.+.++||+..+.||.+.++.|+.+..|.+|||++|++|+||.++-++|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg--~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGG--KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCC--ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEE
Confidence 346899999999999999999987443 568999999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecC
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYS 552 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t 552 (1417)
| -..|. .+.+|.||+||+||.. -|.++.|+.
T Consensus 582 n--------vtlpd----------~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 582 N--------VTLPD----------DKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred E--------EecCc----------ccchhhhhhhccchhhhcceeEEEee
Confidence 9 33343 4455669999999998 599888874
No 123
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.51 E-value=1.6e-14 Score=141.79 Aligned_cols=91 Identities=40% Similarity=0.646 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCChhHH--HHHh
Q psy3476 603 SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCE--TARK 680 (1417)
Q Consensus 603 ~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~--~~r~ 680 (1417)
.|++.|+.+||||.+++||++|+.|+.||++|++||||+.|..++|++++++|+|+||+.++|..+...+...+ ..++
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999998755443322 2333
Q ss_pred h---------cccCCCChHHHH
Q psy3476 681 E---------LESNHGDPLTVL 693 (1417)
Q Consensus 681 ~---------f~~~~sD~ltll 693 (1417)
+ +.+..|||+|++
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 3 467789999986
No 124
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.50 E-value=2.8e-13 Score=171.90 Aligned_cols=125 Identities=21% Similarity=0.191 Sum_probs=103.4
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
..++..+.+.. ..+.++||||++++.++.+++.|.+ .++.+..+||++++.+|.++++.|++|+..|+|||++
T Consensus 429 ~~Ll~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~-----~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 429 DDLLSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKE-----LGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred HHHHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhh-----hccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 34555555443 3467899999999999999999987 5678999999999999999999999999999999999
Q ss_pred hhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHH
Q psy3476 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554 (1417)
Q Consensus 490 ae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~ 554 (1417)
+++|+|+|++++||. +|... ...+-|..++.||+|||||..+|.|+.+++..
T Consensus 502 L~rGfDiP~v~lVvi--------~Dadi-----fG~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 502 LREGLDLPEVSLVAI--------LDADK-----EGFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred hcCCeeeCCCcEEEE--------eCccc-----ccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 999999999999998 55321 11234566777999999999999999887654
No 125
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.47 E-value=1.2e-12 Score=164.94 Aligned_cols=228 Identities=17% Similarity=0.203 Sum_probs=137.9
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHH----HHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV----IKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~l----lk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
.+++||...++ ..+.++++|||||-|+-++..+-...+ +..+.....+..+|+-|||...+.+..-.
T Consensus 298 ~vVIGtRSAlF---------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~ 368 (730)
T COG1198 298 RVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAE 368 (730)
T ss_pred eEEEEechhhc---------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhh
Confidence 46678888887 779999999999999655433211111 11122233578999999999999888776
Q ss_pred ccCceEEEeCCccc---ceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHH----------
Q psy3476 371 NRIAKIIKVPGRLY---PIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE---------- 437 (1417)
Q Consensus 371 ~~~~~vi~v~gr~~---pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~e---------- 437 (1417)
.+....+.+..|.. +..+...............+ ...+++.|.+.+ ..+.++|+|+|.+.-
T Consensus 369 ~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~l----S~~Ll~~i~~~l--~~geQ~llflnRRGys~~l~C~~Cg 442 (730)
T COG1198 369 SGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSL----SPALLEAIRKTL--ERGEQVLLFLNRRGYAPLLLCRDCG 442 (730)
T ss_pred cCceEEEEccccccccCCCcceEEeccccccccCccC----CHHHHHHHHHHH--hcCCeEEEEEccCCccceeecccCC
Confidence 55566676666644 33333332222111111111 123444444443 234566666633221
Q ss_pred --------------------------------------------------HHHHHHHHHhhhhccCCcEEEEecCCCCHH
Q psy3476 438 --------------------------------------------------ISSIVRAAQEYNEKSQGWIVLPLHSTLSLE 467 (1417)
Q Consensus 438 --------------------------------------------------ie~la~~L~~~~~~~~~~~V~~LHs~Ls~~ 467 (1417)
++++.+.|.++. ++..+..+-++....
T Consensus 443 ~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F---P~~rv~r~d~Dtt~~ 519 (730)
T COG1198 443 YIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF---PGARIIRIDSDTTRR 519 (730)
T ss_pred CcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC---CCCcEEEEccccccc
Confidence 233334444433 566777777776654
Q ss_pred H--HHHHhccCCCCCceEEEecchhhccCCcCCeEEEE--cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 468 E--QDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV--DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 468 e--R~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI--dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
. =+..+..|.+|+..|||.|++++.|.|+|+++.|. | -|.--+..+|...--.-.-+.|-+|||||.+
T Consensus 520 k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~--------aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~ 591 (730)
T COG1198 520 KGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLD--------ADTGLGSPDFRASERTFQLLMQVAGRAGRAG 591 (730)
T ss_pred hhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEe--------chhhhcCCCcchHHHHHHHHHHHHhhhccCC
Confidence 3 34678899999999999999999999999999774 2 2222222233211122234569999999996
Q ss_pred -CCeEE
Q psy3476 544 -PGVCY 548 (1417)
Q Consensus 544 -~G~cy 548 (1417)
+|.++
T Consensus 592 ~~G~Vv 597 (730)
T COG1198 592 KPGEVV 597 (730)
T ss_pred CCCeEE
Confidence 78765
No 126
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.46 E-value=1.1e-14 Score=139.87 Aligned_cols=90 Identities=23% Similarity=0.293 Sum_probs=77.9
Q ss_pred HHHHHHhhccccccccccchhhhhcccCCCCccccchhhhcccc-cchhhHHHHHHhhccccccchhhhcccccccCCCC
Q psy3476 871 SSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMF-HQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLP 949 (1417)
Q Consensus 871 ~A~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~-~cl~~~l~i~a~ls~~~~~~~~~~~~~~~~~~~~~ 949 (1417)
+|++.|+.+||||++|+||++|+.|+.||++|++||||+.|+.+ +|.+++++|+|+++.++++.+. .+....+..+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999 9999999999999988865544 334445556667
Q ss_pred ccCC-CCCccccc
Q psy3476 950 VDIP-LGKMLVFG 961 (1417)
Q Consensus 950 f~~~-~gd~lt~l 961 (1417)
|... .|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 7777 89999874
No 127
>KOG0949|consensus
Probab=99.42 E-value=8.5e-12 Score=154.24 Aligned_cols=97 Identities=21% Similarity=0.201 Sum_probs=76.3
Q ss_pred EEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhc
Q psy3476 457 VLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536 (1417)
Q Consensus 457 V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~ 536 (1417)
+..+|+||...+|..|+-.|+.|...|++||.+++-|||.|..++|.- ..+++ ...-.|.|++
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~--------------gDsLQ---L~plny~Qma 1027 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFA--------------GDSLQ---LDPLNYKQMA 1027 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEe--------------ccccc---cCchhHHhhh
Confidence 556699999999999999999999999999999999999998888874 12333 4556788999
Q ss_pred CcCCCCC---CCeEE-EecCHHHHHHhhccCCCccccc
Q psy3476 537 GRAGRTG---PGVCY-RLYSEEQYSLLAEYSTPEIRRV 570 (1417)
Q Consensus 537 GRAGR~g---~G~cy-~L~t~~~~~~l~~~~~pEI~r~ 570 (1417)
|||||.| -|.+. .=++.....++.-...|.|+-.
T Consensus 1028 GRAGRRGFD~lGnV~FmgiP~~kv~rLlts~L~diqG~ 1065 (1330)
T KOG0949|consen 1028 GRAGRRGFDTLGNVVFMGIPRQKVQRLLTSLLPDIQGA 1065 (1330)
T ss_pred ccccccccccccceEEEeCcHHHHHHHHHHhhhcccCC
Confidence 9999999 47664 4466666666555555665543
No 128
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.39 E-value=3.5e-13 Score=129.52 Aligned_cols=90 Identities=36% Similarity=0.601 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhcc-CChhhHHHHhhhccCCCccccCCCCChhHHHHHhh
Q psy3476 603 SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMF-HQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKE 681 (1417)
Q Consensus 603 ~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f-~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~ 681 (1417)
+|++.|+.+||||.++++|++|+.|+.||++|++||||+.+..+ +|.+++++|+|++++.++|..+ ....+....++.
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 8999999999999999998766 445566677788
Q ss_pred cccC-CCChHHHH
Q psy3476 682 LESN-HGDPLTVL 693 (1417)
Q Consensus 682 f~~~-~sD~ltll 693 (1417)
|... .|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 8887 89999863
No 129
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.38 E-value=5.2e-11 Score=147.53 Aligned_cols=154 Identities=16% Similarity=0.228 Sum_probs=100.5
Q ss_pred HHHHHHHhhCCC--C--CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccC-CCCCceEEE
Q psy3476 411 RILSIIDKKYPR--T--ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA-PEGLRKCIV 485 (1417)
Q Consensus 411 ~il~~l~~~~~~--~--~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f-~~G~rkVLV 485 (1417)
.+...+.+.+.. . ..+++||||.+..+++.+.+.+.+..++..+--+..+.+.-...+ ..+-+-+ ++...+|.+
T Consensus 408 ~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q-~~Id~f~~ke~~P~Iai 486 (875)
T COG4096 408 TVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ-ALIDNFIDKEKYPRIAI 486 (875)
T ss_pred HHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH-HHHHHHHhcCCCCceEE
Confidence 344445444443 1 247899999999999999999988776655555666666654333 3222222 344568999
Q ss_pred ecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCC--C------eEEEec---CHH
Q psy3476 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP--G------VCYRLY---SEE 554 (1417)
Q Consensus 486 ATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~--G------~cy~L~---t~~ 554 (1417)
+.+.+.+|||+|.|..+|- +..- -|+.-++||+||+-|..+ | ..|.++ ..-
T Consensus 487 tvdlL~TGiDvpev~nlVF---------~r~V---------rSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~ 548 (875)
T COG4096 487 TVDLLTTGVDVPEVVNLVF---------DRKV---------RSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNT 548 (875)
T ss_pred ehhhhhcCCCchheeeeee---------hhhh---------hhHHHHHHHhcCccccCccccCccccceeEEEEEhhhhh
Confidence 9999999999999987773 2211 378889999999999863 3 233333 333
Q ss_pred HHHHhhccCCCcccccChHHHHHHHHhhC
Q psy3476 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMG 583 (1417)
Q Consensus 555 ~~~~l~~~~~pEI~r~~L~~~lL~lk~lg 583 (1417)
++-.+.+...+.-.+.++..-++.-....
T Consensus 549 ~~~~~~~~~~e~~~~~~l~~rLF~~~~~~ 577 (875)
T COG4096 549 EYFEMDPEMREGRVRVSLEQRLFADRLFD 577 (875)
T ss_pred hhhccCcccccccccchHHHHHhhhhhcc
Confidence 44455555666666666666555544433
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=6e-11 Score=147.50 Aligned_cols=167 Identities=22% Similarity=0.215 Sum_probs=107.7
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++-+||.|. ..+.|.+.+ +.+++.+|.. .|+.-...|...... ....+..+++.+.+.+ ..+.+||
T Consensus 363 ~kLsGMTGTa~t~~~Ef~~iY--~l~Vv~IPtn-kp~~R~d~~d~iy~t------~~~k~~Aii~ei~~~~--~~GrPVL 431 (764)
T PRK12326 363 PTVCGMTGTAVAAGEQLRQFY--DLGVSVIPPN-KPNIREDEADRVYAT------AAEKNDAIVEHIAEVH--ETGQPVL 431 (764)
T ss_pred chheeecCCChhHHHHHHHHh--CCcEEECCCC-CCceeecCCCceEeC------HHHHHHHHHHHHHHHH--HcCCCEE
Confidence 4788999999 466777777 4667777754 232211111111000 0112445666665554 3477999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC------------
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID------------ 497 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP------------ 497 (1417)
|.+.+.++.+.+++.|.+ .++....|++.-...|-..|-++-+.| .|.||||.|.||-||.
T Consensus 432 Vgt~sI~~SE~ls~~L~~-----~gI~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V 504 (764)
T PRK12326 432 VGTHDVAESEELAERLRA-----AGVPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRV 504 (764)
T ss_pred EEeCCHHHHHHHHHHHHh-----CCCcceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHH
Confidence 999999999999999987 567777788775544444444444444 6999999999999985
Q ss_pred ---CeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHH
Q psy3476 498 ---GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEE 554 (1417)
Q Consensus 498 ---~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~ 554 (1417)
+=-+||-+.+ +-|+--=.|-.|||||.| ||.+-.+.|-+
T Consensus 505 ~~~GGLhVIgTer------------------heSrRID~QLrGRaGRQGDpGss~f~lSle 547 (764)
T PRK12326 505 AELGGLHVIGTGR------------------HRSERLDNQLRGRAGRQGDPGSSVFFVSLE 547 (764)
T ss_pred HHcCCcEEEeccC------------------CchHHHHHHHhcccccCCCCCceeEEEEcc
Confidence 1224554332 223334459999999999 89876565544
No 131
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=6.8e-12 Score=159.49 Aligned_cols=169 Identities=19% Similarity=0.228 Sum_probs=119.5
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.|+-+|+.|. ....|.+.+ +..++.+|... |+.-...+... + .-....+..++..+.... ..+.++|
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY--~L~Vv~IPTnr-P~~R~D~~d~v--y----~t~~eK~~Ali~~I~~~~--~~grpVL 602 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIY--KLDVVVIPTNK-PIVRKDMDDLV--Y----KTRREKYNAIVLKVEELQ--KKGQPVL 602 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHh--CCcEEECCCCC-CcceecCCCeE--e----cCHHHHHHHHHHHHHHHh--hCCCCEE
Confidence 4788899998 355677766 56677776432 22211111100 0 000112344555554443 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC---CeEE-----
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID---GIRF----- 501 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP---~V~~----- 501 (1417)
|||+|++.++.+++.|.. .++....||+ .+.+|+..+..|+.+...|+||||+|+||+||+ +|..
T Consensus 603 Ift~Sve~sE~Ls~~L~~-----~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~ 675 (1025)
T PRK12900 603 VGTASVEVSETLSRMLRA-----KRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLF 675 (1025)
T ss_pred EEeCcHHHHHHHHHHHHH-----cCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCce
Confidence 999999999999999987 6788889997 578899999999999999999999999999999 5533
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQY 556 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~ 556 (1417)
||+ ++.+. |...+.||+|||||.| ||.+..+++.++.
T Consensus 676 VIg--------terhe----------s~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 676 ILG--------SERHE----------SRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred eeC--------CCCCc----------hHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 355 33333 4445569999999999 8999988887654
No 132
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.32 E-value=1.4e-11 Score=130.49 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC----CCcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG----FQRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~----~~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
++|.++++.+.++++++|.||||||||+.+..+++... ..++++..|++..+.++.+++.....
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~ 69 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFS 69 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccc
Confidence 67999999999999999999999999998877765532 23899999999999999887766543
No 133
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.32 E-value=2.3e-11 Score=155.95 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=70.5
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHH---------------------HHHHHhccCCC-CCce
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLE---------------------EQDRVFHYAPE-GLRK 482 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~---------------------eR~~v~~~f~~-G~rk 482 (1417)
+++.+|||.++..+..+.+.+.++.....+.....+++..+.+ ....+.+.|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 5899999999999999999987754332123444454443222 12356777765 6789
Q ss_pred EEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCC
Q psy3476 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542 (1417)
Q Consensus 483 VLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~ 542 (1417)
|+|.++.+-+|+|.|.+.+++ .|-|.... .+.|.+||+-|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLy---------ldKplk~h----------~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLY---------LDKPLKYH----------GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEE---------Eecccccc----------HHHHHHHHhccc
Confidence 999999999999999988776 33443322 345999999994
No 134
>KOG0953|consensus
Probab=99.31 E-value=4.4e-11 Score=141.45 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=91.2
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCC--CCceEEEecchhhccCCcCC
Q psy3476 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE--GLRKCIVSTNIAETSITIDG 498 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~--G~rkVLVATnIae~GIdIP~ 498 (1417)
.+-.+|+++| |-++++|-.+...+.+. .+..+..+||+||++.|.+--..|.+ +..+|+||||...+|+|+.
T Consensus 353 ~nlk~GDCvV-~FSkk~I~~~k~kIE~~----g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~- 426 (700)
T KOG0953|consen 353 SNLKPGDCVV-AFSKKDIFTVKKKIEKA----GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN- 426 (700)
T ss_pred ccCCCCCeEE-EeehhhHHHHHHHHHHh----cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-
Confidence 3345788876 44678899998888762 34558999999999998877777765 8899999999999999995
Q ss_pred eEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC----CCeEEEecCHH
Q psy3476 499 IRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG----PGVCYRLYSEE 554 (1417)
Q Consensus 499 V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g----~G~cy~L~t~~ 554 (1417)
|+-||-+-+ ...+.-.+.+++.+++.|-+|||||.| .|.+-.|+.++
T Consensus 427 IrRiiF~sl---------~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 427 IRRIIFYSL---------IKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred eeEEEEeec---------ccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 666664222 122233456899999999999999998 48888887664
No 135
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.31 E-value=9.3e-12 Score=125.77 Aligned_cols=115 Identities=30% Similarity=0.465 Sum_probs=96.6
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa 490 (1417)
.+.+.+.+.. ..++++|||+++.+.++.+++.|.+ ....+..+||+++..+|..+++.|.+|..+++++|+.+
T Consensus 16 ~i~~~i~~~~--~~~~~~lvf~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~ 88 (131)
T cd00079 16 ALLELLKEHL--KKGGKVLIFCPSKKMLDELAELLRK-----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHhcc--cCCCcEEEEeCcHHHHHHHHHHHHh-----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChh
Confidence 3444444432 2578999999999999999999986 56789999999999999999999999999999999999
Q ss_pred hccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEe
Q psy3476 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRL 550 (1417)
Q Consensus 491 e~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L 550 (1417)
++|+|+|++++||. ++++ .+..++.|++||+||.| .|.|+.+
T Consensus 89 ~~G~d~~~~~~vi~--------~~~~----------~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVIN--------YDLP----------WSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEE--------eCCC----------CCHHHheecccccccCCCCceEEeC
Confidence 99999999999987 5554 34555669999999999 7888753
No 136
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.26 E-value=9.1e-11 Score=128.72 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=51.2
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH----c---CCCcEEEecchHHHHHHHHHHHHH
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ----A---GFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile----~---~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
..+.+|.++++.+.+++++++++|||+|||..+..++++ . ...++++..|++..+.+.++.+..
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~ 91 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARK 91 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999875555443 2 234688888999988888776544
No 137
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.25 E-value=2.6e-09 Score=126.55 Aligned_cols=124 Identities=23% Similarity=0.251 Sum_probs=102.2
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc
Q psy3476 409 YIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488 (1417)
Q Consensus 409 ~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn 488 (1417)
...++..|.+.. ..+..+||-+-|++-++.+.+.|.+ .++++..+||++..-+|.+++...+.|...|||.-|
T Consensus 432 vdDL~~EI~~r~--~~~eRvLVTtLTKkmAEdLT~Yl~e-----~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGIN 504 (663)
T COG0556 432 VDDLLSEIRKRV--AKNERVLVTTLTKKMAEDLTEYLKE-----LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN 504 (663)
T ss_pred HHHHHHHHHHHH--hcCCeEEEEeehHHHHHHHHHHHHh-----cCceEEeeeccchHHHHHHHHHHHhcCCccEEEeeh
Confidence 344555555543 2357899999999999999999988 789999999999999999999999999999999999
Q ss_pred hhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCH
Q psy3476 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553 (1417)
Q Consensus 489 Iae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~ 553 (1417)
.+-.|+|+|.|..|.- .|.... . +.-|-.|..|-+|||.|.-.|+++ ||..
T Consensus 505 LLREGLDiPEVsLVAI--------lDADKe--G---FLRse~SLIQtIGRAARN~~GkvI-lYAD 555 (663)
T COG0556 505 LLREGLDLPEVSLVAI--------LDADKE--G---FLRSERSLIQTIGRAARNVNGKVI-LYAD 555 (663)
T ss_pred hhhccCCCcceeEEEE--------eecCcc--c---cccccchHHHHHHHHhhccCCeEE-EEch
Confidence 9999999999999875 444321 1 224667778999999999999998 4443
No 138
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.23 E-value=1.2e-09 Score=144.22 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=86.9
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa 490 (1417)
.+...|.+.+. ..+|++|||+++.+..+.+++.|...... .++.+.. .+.. .+|.++++.|++|+..|+++|+.+
T Consensus 661 ~ia~~i~~l~~-~~~g~~LVlftS~~~l~~v~~~L~~~~~~-~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf 735 (850)
T TIGR01407 661 EIASYIIEITA-ITSPKILVLFTSYEMLHMVYDMLNELPEF-EGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHHHhhhccc-cCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEccee
Confidence 45555555443 34689999999999999999998652211 2333333 2322 468889999999999999999999
Q ss_pred hccCCcCCeE--EEEcCCcccceecccCCC--------------cccccee--ecCHhhHHhhcCcCCCCC--CCeEEEe
Q psy3476 491 ETSITIDGIR--FVVDSGKVKEMSYDVTAK--------------MSTLQEF--WISKASAEQRKGRAGRTG--PGVCYRL 550 (1417)
Q Consensus 491 e~GIdIP~V~--~VIdsG~~k~~~yD~~~~--------------~~~l~~~--~ISkasa~QR~GRAGR~g--~G~cy~L 550 (1417)
.+|||+|+.. .||-.|+. |.+|.. -..+... |-......|-+||.=|.. .|..+.+
T Consensus 736 ~EGVD~~g~~l~~viI~~LP----f~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLP----FANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred ecccccCCCceEEEEEeCCC----CCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 9999999865 45555553 222221 1112111 223345789999999987 4776654
No 139
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=2e-10 Score=145.97 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=81.7
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++-+||.|. ..+.|.+.+ +..++.+|... |+.-...+... + .-....+..+++.+.+.+ ..+.+||
T Consensus 385 ~kLsGMTGTa~te~~Ef~~iY--~l~Vv~IPTnk-P~~R~D~~d~v--y----~t~~eK~~Ai~~ei~~~~--~~GrPVL 453 (913)
T PRK13103 385 NKLSGMTGTADTEAFEFRQIY--GLDVVVIPPNK-PLARKDFNDLV--Y----LTAEEKYAAIITDIKECM--ALGRPVL 453 (913)
T ss_pred chhccCCCCCHHHHHHHHHHh--CCCEEECCCCC-CcccccCCCeE--E----cCHHHHHHHHHHHHHHHH--hCCCCEE
Confidence 4788999999 355677776 56777777432 22211111100 0 000123455666666554 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
|-+.+.+..+.+++.|.+ .++..-.|++.-...|-..|-++-+.| .|.||||.|.||-||-
T Consensus 454 VGT~SVe~SE~ls~~L~~-----~gi~h~VLNAk~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIk 514 (913)
T PRK13103 454 VGTATIETSEHMSNLLKK-----EGIEHKVLNAKYHEKEAEIIAQAGRPG--ALTIATNMAGRGTDIL 514 (913)
T ss_pred EEeCCHHHHHHHHHHHHH-----cCCcHHHhccccchhHHHHHHcCCCCC--cEEEeccCCCCCCCEe
Confidence 999999999999999987 455555566664444544555444444 6999999999999983
No 140
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.20 E-value=3.4e-10 Score=144.89 Aligned_cols=95 Identities=16% Similarity=0.048 Sum_probs=68.0
Q ss_pred EEEeCCHHHHHHHHHHHHhhhh-ccCCcEEEEecCCCCHHHHHHHhccC--------------------------CCCCc
Q psy3476 429 LIFMSGISEISSIVRAAQEYNE-KSQGWIVLPLHSTLSLEEQDRVFHYA--------------------------PEGLR 481 (1417)
Q Consensus 429 LVFl~~~~eie~la~~L~~~~~-~~~~~~V~~LHs~Ls~~eR~~v~~~f--------------------------~~G~r 481 (1417)
||=+++.+.+..+++.|..... ....+.+..+||..+...|..+++.. ..+..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 6667788888888888765432 23456788899999888888766432 12567
Q ss_pred eEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCC
Q psy3476 482 KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544 (1417)
Q Consensus 482 kVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~ 544 (1417)
.|+|||++.|.|+|++--..+.+ +. +-.+..||+||..|.+.
T Consensus 840 ~i~v~Tqv~E~g~D~dfd~~~~~-----------~~----------~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDHDYDWAIAD-----------PS----------SMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEecccCCeeeec-----------cC----------cHHHHHHHhhccccccc
Confidence 99999999999999973222222 33 44455599999999883
No 141
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.20 E-value=1.1e-11 Score=114.94 Aligned_cols=73 Identities=29% Similarity=0.413 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhH
Q psy3476 453 QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASA 532 (1417)
Q Consensus 453 ~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa 532 (1417)
.++.+..+||+++.++|..+++.|.+|..+|||||+++++|||+|++++||. |+++. |..++
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~~~~----------~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YDPPW----------SPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SSSES----------SHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cccCC----------CHHHH
Confidence 6789999999999999999999999999999999999999999999999999 66654 55566
Q ss_pred HhhcCcCCCCC
Q psy3476 533 EQRKGRAGRTG 543 (1417)
Q Consensus 533 ~QR~GRAGR~g 543 (1417)
.|++||+||.|
T Consensus 68 ~Q~~GR~~R~g 78 (78)
T PF00271_consen 68 IQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSTTT
T ss_pred HHHhhcCCCCC
Confidence 69999999986
No 142
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=5.1e-10 Score=141.00 Aligned_cols=166 Identities=17% Similarity=0.206 Sum_probs=104.0
Q ss_pred CcEEEEccCCC--HHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATIN--IELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++-+||.|.. .+.|.+.+ +..++.+|... |+.-...|...... ....+..+++.+.+.+ ..+.+||
T Consensus 362 ~kLsGMTGTA~te~~Ef~~iY--~l~Vv~IPTnk-P~~R~D~~d~iy~t------~~~K~~Aii~ei~~~~--~~gqPVL 430 (925)
T PRK12903 362 KKLSGMTGTAKTEEQEFIDIY--NMRVNVVPTNK-PVIRKDEPDSIFGT------KHAKWKAVVKEVKRVH--KKGQPIL 430 (925)
T ss_pred chhhccCCCCHHHHHHHHHHh--CCCEEECCCCC-CeeeeeCCCcEEEc------HHHHHHHHHHHHHHHH--hcCCCEE
Confidence 47889999983 44666666 56777777532 32222211111000 0122445666665554 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeE--------E
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR--------F 501 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~--------~ 501 (1417)
|.+.+.+..+.+++.|.+ .++..-.|++.-...|-..|-++-+. -.|.||||.|.||-||---. +
T Consensus 431 VgT~SIe~SE~ls~~L~~-----~gi~h~vLNAk~~e~EA~IIa~AG~~--GaVTIATNMAGRGTDI~Lg~~V~~~GGLh 503 (925)
T PRK12903 431 IGTAQVEDSETLHELLLE-----ANIPHTVLNAKQNAREAEIIAKAGQK--GAITIATNMAGRGTDIKLSKEVLELGGLY 503 (925)
T ss_pred EEeCcHHHHHHHHHHHHH-----CCCCceeecccchhhHHHHHHhCCCC--CeEEEecccccCCcCccCchhHHHcCCcE
Confidence 999999999999999987 56666677776444444444333333 36999999999999996222 6
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSE 553 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~ 553 (1417)
||-+.+. -|+--=.|-.|||||.| ||.+-.+.+-
T Consensus 504 VIgTerh------------------eSrRIDnQLrGRaGRQGDpGss~f~lSL 538 (925)
T PRK12903 504 VLGTDKA------------------ESRRIDNQLRGRSGRQGDVGESRFFISL 538 (925)
T ss_pred EEecccC------------------chHHHHHHHhcccccCCCCCcceEEEec
Confidence 6653321 12222339999999999 8987544443
No 143
>KOG4150|consensus
Probab=99.18 E-value=2.1e-10 Score=134.85 Aligned_cols=206 Identities=14% Similarity=0.098 Sum_probs=137.3
Q ss_pred CccEEEEecCcccc-cCcchHHHHHHHHhc------cCCCCcEEEEccCC--CHHHHHHHhc-cCceEEEeCCccccee-
Q psy3476 319 SYDVLVLDEIHERH-LHGDFLLGVIKCLLH------STAEVKIILMSATI--NIELFHTYFN-RIAKIIKVPGRLYPIQ- 387 (1417)
Q Consensus 319 ~~~~VIlDEaHER~-l~~d~ll~llk~l~~------~r~~~qvIlmSATl--n~~~~~~~f~-~~~~vi~v~gr~~pv~- 387 (1417)
...++++||+|-.. +.+......++.+.. ...+++++-.|||+ +.+...+.|+ +...+++++|.+..-+
T Consensus 412 ~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~ 491 (1034)
T KOG4150|consen 412 EELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKL 491 (1034)
T ss_pred HHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccce
Confidence 34578899999222 122222233333332 24688999999999 4666677774 3567788888876544
Q ss_pred -EEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCC---cEEEEecCC
Q psy3476 388 -LEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQG---WIVLPLHST 463 (1417)
Q Consensus 388 -v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~---~~V~~LHs~ 463 (1417)
+.|.|........ .+ ..........+.+.. ..+-.+|.||+.++-|+.+....++....... -.+..+.||
T Consensus 492 ~V~WNP~~~P~~~~-~~--~~~i~E~s~~~~~~i--~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGG 566 (1034)
T KOG4150|consen 492 FVLWNPSAPPTSKS-EK--SSKVVEVSHLFAEMV--QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGG 566 (1034)
T ss_pred EEEeCCCCCCcchh-hh--hhHHHHHHHHHHHHH--HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCc
Confidence 3344433222111 11 011222222222222 22457999999999999887766553322211 135567899
Q ss_pred CCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 464 LSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 464 Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
.+.++|++|+...-.|+.+-|+|||.+|-||||.+.+.|+.+|+ |.|-++++|..|||||..
T Consensus 567 Y~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRN 628 (1034)
T KOG4150|consen 567 YIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRN 628 (1034)
T ss_pred cchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccC------------------chhHHHHHHHhccccccC
Confidence 99999999999988999999999999999999999999999776 567888899999999987
Q ss_pred -CCeE
Q psy3476 544 -PGVC 547 (1417)
Q Consensus 544 -~G~c 547 (1417)
+...
T Consensus 629 k~SLa 633 (1034)
T KOG4150|consen 629 KPSLA 633 (1034)
T ss_pred CCceE
Confidence 4443
No 144
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.15 E-value=9.7e-11 Score=149.81 Aligned_cols=124 Identities=23% Similarity=0.205 Sum_probs=103.6
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
..+++.+.+.. ..+.++||||++++.++.+++.|.. .++.+..+||++++.+|..+++.|++|...|+|||++
T Consensus 433 ~~L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~-----~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~ 505 (652)
T PRK05298 433 DDLLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKE-----LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINL 505 (652)
T ss_pred HHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhh-----cceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCH
Confidence 34555555443 3467899999999999999999987 6788999999999999999999999999999999999
Q ss_pred hhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCH
Q psy3476 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553 (1417)
Q Consensus 490 ae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~ 553 (1417)
+++|+|+|++++||. +|.+. ...|-+..+|.||+||+||...|.|+.+++.
T Consensus 506 L~rGfdlp~v~lVii--------~d~ei-----fG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 506 LREGLDIPEVSLVAI--------LDADK-----EGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred HhCCccccCCcEEEE--------eCCcc-----cccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 999999999999998 55421 1123466778899999999889999988873
No 145
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.13 E-value=1.3e-08 Score=128.32 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=87.4
Q ss_pred CCCCcEEEEccCCC-----HHHHHHHhccCceEEEeCCcc---cceeEEeccccccccccccCCCCChHHHHHHHHHhhC
Q psy3476 349 TAEVKIILMSATIN-----IELFHTYFNRIAKIIKVPGRL---YPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKY 420 (1417)
Q Consensus 349 r~~~qvIlmSATln-----~~~~~~~f~~~~~vi~v~gr~---~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~ 420 (1417)
...-++|++|||.. ...|.+.++- .+.+.. -.+...|... ....++++.+.+.
T Consensus 274 ~k~g~LvvsSATg~~rg~R~~LfReLlgF-----evG~~~~~LRNIvD~y~~~-------------~~~e~~~elvk~l- 334 (1187)
T COG1110 274 RKLGILVVSSATGKPRGSRLKLFRELLGF-----EVGSGGEGLRNIVDIYVES-------------ESLEKVVELVKKL- 334 (1187)
T ss_pred cCCceEEEeeccCCCCCchHHHHHHHhCC-----ccCccchhhhheeeeeccC-------------ccHHHHHHHHHHh-
Confidence 35678999999993 3456666631 111110 0111111111 2244555555443
Q ss_pred CCCCCCcEEEEeCC---HHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEec----chhhcc
Q psy3476 421 PRTERGDVLIFMSG---ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST----NIAETS 493 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~---~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVAT----nIae~G 493 (1417)
+...|||++. ++.++++++.|+. .++++...|+. ..+.++.|..|+..|+|.. .++-+|
T Consensus 335 ----G~GgLIfV~~d~G~e~aeel~e~Lr~-----~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRG 400 (1187)
T COG1110 335 ----GDGGLIFVPIDYGREKAEELAEYLRS-----HGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRG 400 (1187)
T ss_pred ----CCCeEEEEEcHHhHHHHHHHHHHHHh-----cCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeec
Confidence 3467999998 9999999999987 78999999984 3678999999999999975 589999
Q ss_pred CCcCC-eEEEEcCCcc
Q psy3476 494 ITIDG-IRFVVDSGKV 508 (1417)
Q Consensus 494 IdIP~-V~~VIdsG~~ 508 (1417)
||+|. ++|+|-.|-.
T Consensus 401 lDLP~rirYaIF~GvP 416 (1187)
T COG1110 401 LDLPHRIRYAVFYGVP 416 (1187)
T ss_pred CCchhheeEEEEecCC
Confidence 99995 6899985543
No 146
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.10 E-value=3.2e-09 Score=139.35 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=91.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCC---CCceEEEecchhhccCCcCCeE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE---GLRKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~---G~rkVLVATnIae~GIdIP~V~ 500 (1417)
.+.+||||+.-......+.+.|.. .++....+||+++.++|..+++.|.. +..-+|++|.++..|||+...+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~-----~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad 560 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMY-----RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATAD 560 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHH-----cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCC
Confidence 456899999887777777777765 57889999999999999999999964 3356789999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYS 557 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~ 557 (1417)
+||. ||++-+.... .|+.||+-|.| +=.+|+|+++...+
T Consensus 561 ~VIi--------yD~dWNP~~d----------~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 561 IVIL--------YDSDWNPQVD----------LQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred EEEE--------eCCCCChHHH----------HHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 9998 8887654444 49999999999 34688999876554
No 147
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.09 E-value=5.7e-09 Score=132.53 Aligned_cols=128 Identities=16% Similarity=0.117 Sum_probs=81.9
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++.+||.|. ..+.|.+.+ +..++.+|... |+.-...|...... ....+..+++.+.+.+ ..+.+||
T Consensus 360 ~kL~GMTGTa~te~~Ef~~iY--~l~vv~IPtnk-p~~R~d~~d~v~~t------~~~K~~AI~~ei~~~~--~~grPVL 428 (870)
T CHL00122 360 PKLSGMTGTAKTEELEFEKIY--NLEVVCIPTHR-PMLRKDLPDLIYKD------ELSKWRAIADECLQMH--QTGRPIL 428 (870)
T ss_pred chhcccCCCCHHHHHHHHHHh--CCCEEECCCCC-CccceeCCCeEEeC------HHHHHHHHHHHHHHHH--hcCCCEE
Confidence 4788999999 344677766 56777777432 22211111111000 0112345566555554 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCC--CHHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTL--SLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~L--s~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
|-+.+.+..+.+++.|.+ .++..-.|++.- ...|-..|-++-+.| .|.||||.|.||.||-
T Consensus 429 IgT~SIe~SE~ls~~L~~-----~gi~h~vLNAk~~~~~~EA~IIA~AG~~G--~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 429 IGTTTIEKSELLSQLLKE-----YRLPHQLLNAKPENVRRESEIVAQAGRKG--SITIATNMAGRGTDII 491 (870)
T ss_pred EeeCCHHHHHHHHHHHHH-----cCCccceeeCCCccchhHHHHHHhcCCCC--cEEEeccccCCCcCee
Confidence 999999999999999987 567777777763 234444444444444 6999999999999983
No 148
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.08 E-value=2.4e-09 Score=114.68 Aligned_cols=68 Identities=25% Similarity=0.300 Sum_probs=56.6
Q ss_pred CCcHHHHHHHHHHHhcC-CeEEEEcCCCcchhHHHHHHHHHcCC----CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 38 LPVAQYKQEIIDTVLKE-RVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~-~~~iI~a~TGsGKTt~ipq~ile~~~----~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
-+...+|.++++.+... ++++|.|+||||||+.+..++++... .+++++.|++..+.+..+++.....
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 45578999999999988 99999999999999988877776543 4699999998888888887766553
No 149
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.07 E-value=1.7e-09 Score=109.09 Aligned_cols=84 Identities=26% Similarity=0.220 Sum_probs=60.1
Q ss_pred CeEEEEcCCCcchhHHHHHHHHHcC----CCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEEeecccc------cC
Q psy3476 55 RVVIIAGDTGCGKSTQIPQYLVQAG----FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR------RE 124 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~ile~~----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ir~e~~~------~~ 124 (1417)
++++|.|+||||||+++..++.+.. ..+++++.|++.++.+..+++...... +..+.+........ ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 4679999999999999888877653 368999999999999998887776543 44455544433332 34
Q ss_pred CccEEEEccchhHHhh
Q psy3476 125 KTKIVFITEGLLLRQD 140 (1417)
Q Consensus 125 ~t~I~~~T~g~llr~l 140 (1417)
...|+++|.+.+.+.+
T Consensus 79 ~~~i~i~t~~~~~~~~ 94 (144)
T cd00046 79 KTDIVVGTPGRLLDEL 94 (144)
T ss_pred CCCEEEECcHHHHHHH
Confidence 5677777776665543
No 150
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.02 E-value=2.9e-11 Score=120.95 Aligned_cols=82 Identities=29% Similarity=0.471 Sum_probs=61.7
Q ss_pred chHHHHHHHHHhCCCCcccccCcCCcccccccccccccCCCeEEeCCCCcCCC-CCcccccccCCCCCCCCCCCCCCCCc
Q psy3476 1192 KDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTS-QPDVLRISEDDIVDPPPGLKLPGRNV 1270 (1417)
Q Consensus 1192 ~~~~l~~~iL~~glyP~~a~~d~~n~~~~~~~~~~~t~~k~~v~lhP~s~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 1270 (1417)
.++.+++.+||+|+|||+|..|..+ ...++..+..|.+||+|++.+ .|++
T Consensus 32 ~~~~~i~~~l~aG~~~nvA~~~~~~-------~y~~~~~~~~v~iHPsS~l~~~~p~~---------------------- 82 (114)
T PF07717_consen 32 DQWELIRAALCAGFYPNVARRDNKG-------SYKTLSNGQPVFIHPSSVLFKKPPKW---------------------- 82 (114)
T ss_dssp THCHHHHHHHHHHHCCCEEEE-TTS-------SEEETTTG-EEEE-TTSTTTTTT-SE----------------------
T ss_pred ccHHHHHHHHHHhhhhheEEeCCCC-------CEEEecCCCEEEEecCcccccccccc----------------------
Confidence 7889999999999999999877444 344556666899999998644 4433
Q ss_pred cccchhHHHHHHHHhccchhhhcccccchHHHHhhcccee
Q psy3476 1271 ISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAI 1310 (1417)
Q Consensus 1271 ~s~~hq~~~~~~~leT~k~yl~~~~~~~~~~~lll~~~~i 1310 (1417)
++|.++++|+|+||++|+.|++.. |++|++.+
T Consensus 83 -------vvy~e~~~t~k~y~~~~t~I~~~w-l~~~~~~~ 114 (114)
T PF07717_consen 83 -------VVYHELVRTSKPYMRDVTAISPEW-LLLFAPHY 114 (114)
T ss_dssp -------EEEEEEEESSSEEEEEEEE--HHH-HHHH-TTT
T ss_pred -------chhhhheecCCcEEEECcCCCHHH-HHHHcccC
Confidence 389999999999999999999999 88888753
No 151
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=1.9e-08 Score=127.57 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=80.9
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++-+||.|. ..+.|.+.+ +..++.+|... |+.-...|...... ....+..+++.+.+.+ ..+.+||
T Consensus 375 ~kLsGMTGTa~te~~Ef~~iY--~l~Vv~IPTnk-P~~R~d~~d~vy~t------~~~K~~Ai~~ei~~~~--~~GrPVL 443 (939)
T PRK12902 375 PKLAGMTGTAKTEEVEFEKTY--KLEVTVIPTNR-PRRRQDWPDQVYKT------EIAKWRAVANETAEMH--KQGRPVL 443 (939)
T ss_pred chhcccCCCCHHHHHHHHHHh--CCcEEEcCCCC-CeeeecCCCeEEcC------HHHHHHHHHHHHHHHH--hCCCCEE
Confidence 4788999998 345677776 56777777532 32221111111000 0112445666665554 3477999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCC-CC-HHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHST-LS-LEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~-Ls-~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
|-+.+.+..+.+++.|.+ .++..-.|++. .. ..|-..|-++-+.| .|.||||.|.||-||-
T Consensus 444 IgT~SVe~SE~ls~~L~~-----~gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIk 506 (939)
T PRK12902 444 VGTTSVEKSELLSALLQE-----QGIPHNLLNAKPENVEREAEIVAQAGRKG--AVTIATNMAGRGTDII 506 (939)
T ss_pred EeeCCHHHHHHHHHHHHH-----cCCchheeeCCCcchHhHHHHHHhcCCCC--cEEEeccCCCCCcCEe
Confidence 999999999999999987 55666667775 22 33333444444443 6999999999998873
No 152
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.98 E-value=6.3e-10 Score=102.87 Aligned_cols=80 Identities=38% Similarity=0.530 Sum_probs=69.4
Q ss_pred HHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCcc
Q psy3476 441 IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMS 520 (1417)
Q Consensus 441 la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~ 520 (1417)
+++.|.. .++.+..+||+++.++|..+++.|.+|..+|+++|+++++|+|+|+++.||. +++
T Consensus 3 l~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~~----- 64 (82)
T smart00490 3 LAELLKE-----LGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YDL----- 64 (82)
T ss_pred HHHHHHH-----CCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eCC-----
Confidence 4455554 4688999999999999999999999999999999999999999999999998 554
Q ss_pred ccceeecCHhhHHhhcCcCCCCC
Q psy3476 521 TLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 521 ~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
+.+..++.|++||+||.|
T Consensus 65 -----~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 65 -----PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred -----CCCHHHHHHhhcccccCC
Confidence 346677779999999975
No 153
>KOG0951|consensus
Probab=98.91 E-value=1e-08 Score=130.38 Aligned_cols=234 Identities=14% Similarity=0.152 Sum_probs=147.5
Q ss_pred cccchhhhhhccccccccccccCCCCccEEEEecCcccc-cCcch---HHHHHHHHhccCCCCcEEEEccCC-CHHHHHH
Q psy3476 294 GDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERH-LHGDF---LLGVIKCLLHSTAEVKIILMSATI-NIELFHT 368 (1417)
Q Consensus 294 ~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~-l~~d~---ll~llk~l~~~r~~~qvIlmSATl-n~~~~~~ 368 (1417)
+++++.||++|... ...+++++.|.||.|.-+ ..+.. .-.+..+....-+.+|++.+|..+ |+.++ -
T Consensus 1235 ~~vii~tpe~~d~l-------q~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~-i 1306 (1674)
T KOG0951|consen 1235 GQVIISTPEQWDLL-------QSIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDL-I 1306 (1674)
T ss_pred cceEEechhHHHHH-------hhhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhh-c
Confidence 45667777777644 156788999999999322 11111 112233334445788999999888 77777 2
Q ss_pred HhccCceE--EEeCCcccceeEEecccccccccc-ccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHH
Q psy3476 369 YFNRIAKI--IKVPGRLYPIQLEYHPIVELDRTK-SEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAA 445 (1417)
Q Consensus 369 ~f~~~~~v--i~v~gr~~pv~v~~~~~~~~~~~~-~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L 445 (1417)
++ ....+ +....|+.|.+++........+.. ...+....+ ..+.+.. ..+.+.+||+|+++.+..++..+
T Consensus 1307 g~-s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~----~ai~~~a--~~~k~~~vf~p~rk~~~~~a~~~ 1379 (1674)
T KOG0951|consen 1307 GA-SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTY----TAIVRHA--GNRKPAIVFLPTRKHARLVAVDL 1379 (1674)
T ss_pred cc-cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHH----HHHHHHh--cCCCCeEEEeccchhhhhhhhcc
Confidence 22 22333 344567888887765433322211 001111122 2233322 35778999999999999888766
Q ss_pred Hhhhh-------------------ccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCC
Q psy3476 446 QEYNE-------------------KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSG 506 (1417)
Q Consensus 446 ~~~~~-------------------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG 506 (1417)
..++. .+-...|. |-+|+..++..+-..|..|.+.|.|...- ..|+-...--+||.
T Consensus 1380 ~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvm-- 1454 (1674)
T KOG0951|consen 1380 VTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVM-- 1454 (1674)
T ss_pred chhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEe--
Confidence 43220 11122233 99999999999999999999999887765 88887765555553
Q ss_pred cccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHH
Q psy3476 507 KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555 (1417)
Q Consensus 507 ~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~ 555 (1417)
.+..||.... .|. ..+.++..|+.|+|.| .|.|+.+.....
T Consensus 1455 --gt~~ydg~e~--~~~--~y~i~~ll~m~G~a~~--~~k~vi~~~~~~ 1495 (1674)
T KOG0951|consen 1455 --GTQYYDGKEH--SYE--DYPIAELLQMVGLASG--AGKCVIMCHTPK 1495 (1674)
T ss_pred --cceeeccccc--ccc--cCchhHHHHHhhhhcC--CccEEEEecCch
Confidence 4566887643 343 3466899999999998 577777764433
No 154
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.90 E-value=5.9e-07 Score=117.90 Aligned_cols=154 Identities=8% Similarity=0.103 Sum_probs=95.0
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecC-CCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHS-TLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs-~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
.+.+.|.... ..+|++||+.++.+..+.+++.|... .+.+ ...| +.+ +.++.+.|+++...||++|..
T Consensus 635 ~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-----~~~~-l~Qg~~~~---~~~l~~~F~~~~~~vLlG~~s 703 (820)
T PRK07246 635 EIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-----QVSH-LAQEKNGT---AYNIKKRFDRGEQQILLGLGS 703 (820)
T ss_pred HHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-----CCcE-EEeCCCcc---HHHHHHHHHcCCCeEEEecch
Confidence 4555554444 34789999999999999999998652 2333 2223 222 456788898888899999999
Q ss_pred hhccCCcCC--eEEEEcCCcccceecccCCC--------------ccccceeecC--HhhHHhhcCcCCCCC--CCeEEE
Q psy3476 490 AETSITIDG--IRFVVDSGKVKEMSYDVTAK--------------MSTLQEFWIS--KASAEQRKGRAGRTG--PGVCYR 549 (1417)
Q Consensus 490 ae~GIdIP~--V~~VIdsG~~k~~~yD~~~~--------------~~~l~~~~IS--kasa~QR~GRAGR~g--~G~cy~ 549 (1417)
+-.|||+|+ ...||-.++. |.+|.. -+.+...-+. .-.+.|=+||.=|.. .|.++.
T Consensus 704 FwEGVD~p~~~~~~viI~kLP----F~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~i 779 (820)
T PRK07246 704 FWEGVDFVQADRMIEVITRLP----FDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLI 779 (820)
T ss_pred hhCCCCCCCCCeEEEEEecCC----CCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 999999973 4444444543 222211 1223222233 345789999999987 588765
Q ss_pred ecCH---HHH-HHhhccCCC--cccccChHHHHHHH
Q psy3476 550 LYSE---EQY-SLLAEYSTP--EIRRVSIDSLLLSL 579 (1417)
Q Consensus 550 L~t~---~~~-~~l~~~~~p--EI~r~~L~~~lL~l 579 (1417)
+=.+ ..| ..+....++ .+...++.++.-.+
T Consensus 780 lD~R~~~k~Yg~~~l~sLP~~~~~~~~~~~~~~~~~ 815 (820)
T PRK07246 780 LDRRILTKSYGKQILASLAEEFLISQQNFSDVLVEI 815 (820)
T ss_pred ECCcccccHHHHHHHHhCCCCCccccCCHHHHHHHH
Confidence 4322 223 334333333 24456666664444
No 155
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.74 E-value=3.3e-08 Score=101.45 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=51.5
Q ss_pred hcCCeEEEEcCCCcchhHH-HHHHHHHcC--CCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEEeecc-cccCCcc
Q psy3476 52 LKERVVIIAGDTGCGKSTQ-IPQYLVQAG--FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK-HRREKTK 127 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~-ipq~ile~~--~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ir~e~-~~~~~t~ 127 (1417)
.+++..+|-..+|+|||+. +|+.+.+.- ..|+++..|+|+.+..+++.+. |..+.|+...-. ......-
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~~~~~g~~~ 74 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARMRTHFGSSI 74 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS----SSSS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHh-------cCCcccCceeeeccccCCCc
Confidence 4678899999999999996 666666543 3589999999998777766552 234555543321 2234556
Q ss_pred EEEEccchhHHhh
Q psy3476 128 IVFITEGLLLRQD 140 (1417)
Q Consensus 128 I~~~T~g~llr~l 140 (1417)
|.++|.+.+.+.+
T Consensus 75 i~vMc~at~~~~~ 87 (148)
T PF07652_consen 75 IDVMCHATYGHFL 87 (148)
T ss_dssp EEEEEHHHHHHHH
T ss_pred ccccccHHHHHHh
Confidence 7777777666544
No 156
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.71 E-value=3.1e-08 Score=105.98 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=47.7
Q ss_pred CCcHHHHHHHHHHHhc-------CCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHH
Q psy3476 38 LPVAQYKQEIIDTVLK-------ERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~-------~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rv 100 (1417)
..++.+|+++++.+.. ++.+++.+|||||||..+..++.+... +++++.|+...+.|....+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-EEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-ceeEecCHHHHHHHHHHHH
Confidence 3467899999888873 689999999999999887776666555 8888889977666666555
No 157
>KOG1123|consensus
Probab=98.66 E-value=2.3e-07 Score=109.00 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=83.7
Q ss_pred HHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC-CceEEEecchh
Q psy3476 412 ILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG-LRKCIVSTNIA 490 (1417)
Q Consensus 412 il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G-~rkVLVATnIa 490 (1417)
.++.+.+.+. ..+.+||||.-+.=.....|-.|.+ -.+||..++.||.+|++.|+-+ ++.-|+-+-++
T Consensus 531 aCqfLI~~HE-~RgDKiIVFsDnvfALk~YAikl~K----------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVg 599 (776)
T KOG1123|consen 531 ACQFLIKFHE-RRGDKIIVFSDNVFALKEYAIKLGK----------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVG 599 (776)
T ss_pred HHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHcCC----------ceEECCCchhHHHHHHHhcccCCccceEEEeecc
Confidence 3444444443 3467899998876655555444432 3479999999999999999865 57888999999
Q ss_pred hccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC----C---CeEEEecCHHHH
Q psy3476 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG----P---GVCYRLYSEEQY 556 (1417)
Q Consensus 491 e~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g----~---G~cy~L~t~~~~ 556 (1417)
.+|||+|..++.|+ ..... =|+-+-.||.||.-|.. + ...|.|++++..
T Consensus 600 DtSiDLPEAnvLIQ--------ISSH~---------GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 600 DTSIDLPEANVLIQ--------ISSHG---------GSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred CccccCCcccEEEE--------Ecccc---------cchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 99999999999998 22221 25666779999888865 2 346777766544
No 158
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.61 E-value=1.2e-05 Score=107.35 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=87.1
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
..+.+.|.+... ..+|.+|||.++.+..+.+++.|...... .++.+.. . ++....|.++.+.|+.+...|+++|..
T Consensus 738 ~~la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~-~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~s 813 (928)
T PRK08074 738 EEVAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEEL-EGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSS 813 (928)
T ss_pred HHHHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccc-cCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCc
Confidence 345555555443 34689999999999999999999753211 1222222 2 333345778888898888899999999
Q ss_pred hhccCCcCCe--EEEEcCCcccceecccCCC--------------cccccee--ecCHhhHHhhcCcCCCCC--CCeEEE
Q psy3476 490 AETSITIDGI--RFVVDSGKVKEMSYDVTAK--------------MSTLQEF--WISKASAEQRKGRAGRTG--PGVCYR 549 (1417)
Q Consensus 490 ae~GIdIP~V--~~VIdsG~~k~~~yD~~~~--------------~~~l~~~--~ISkasa~QR~GRAGR~g--~G~cy~ 549 (1417)
+..|||+|+- +.||-.++. |.+|.. -+.+... |.......|-+||.=|.. .|.++.
T Consensus 814 FwEGVD~pg~~l~~viI~kLP----F~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~i 889 (928)
T PRK08074 814 FWEGIDIPGDELSCLVIVRLP----FAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFV 889 (928)
T ss_pred ccCccccCCCceEEEEEecCC----CCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEE
Confidence 9999999974 677665553 332321 1112211 223445689999999988 487764
Q ss_pred e
Q psy3476 550 L 550 (1417)
Q Consensus 550 L 550 (1417)
+
T Consensus 890 l 890 (928)
T PRK08074 890 L 890 (928)
T ss_pred e
Confidence 4
No 159
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.55 E-value=2.2e-06 Score=109.50 Aligned_cols=67 Identities=6% Similarity=-0.027 Sum_probs=45.6
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHH----HHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV----IKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~l----lk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
.+++||...++ ..+.++++|||||-|+-++..+-...+ +........+..+|+.|||...+.+...-
T Consensus 242 ~IViGtRSAvF---------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~ 312 (665)
T PRK14873 242 RVVVGTRSAVF---------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVE 312 (665)
T ss_pred cEEEEcceeEE---------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHh
Confidence 46778888887 778999999999999554443311110 11122234688999999999988776544
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.40 E-value=1.3e-05 Score=101.55 Aligned_cols=108 Identities=22% Similarity=0.155 Sum_probs=72.4
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
.+.+|-||++|....+.+++.... ....|+.++|.-+.. .+.. =++.+|++=|++...|+++....+=-
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~-----~~~~Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~ 349 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCAR-----FTKKVLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDS 349 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHh-----cCCeEEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceE
Confidence 467888999999999988888876 345788888876655 2221 34589999999999999997654322
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHH
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~ 554 (1417)
..+++|...+. .+..+..|+.||+=.......|..+...
T Consensus 350 ~f~yvk~~~~g------------pd~~s~~Q~lgRvR~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 350 MFAYVKPMSYG------------PDMVSVYQMLGRVRSLLDNEIYVYIDAS 388 (824)
T ss_pred EEEEecCCCCC------------CcHHHHHHHHHHHHhhccCeEEEEEecc
Confidence 22222222121 1234567999999777766666665544
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.31 E-value=1.2e-05 Score=102.45 Aligned_cols=197 Identities=20% Similarity=0.270 Sum_probs=111.9
Q ss_pred CCCCccEEEEecCcccccCc-chHHHHHHHHhcc---------------------CCCCcEEEEccCCC--HHHHHHHhc
Q psy3476 316 FLSSYDVLVLDEIHERHLHG-DFLLGVIKCLLHS---------------------TAEVKIILMSATIN--IELFHTYFN 371 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~-d~ll~llk~l~~~---------------------r~~~qvIlmSATln--~~~~~~~f~ 371 (1417)
...+-.++|+||.-.|.+.+ .+-.++...+... +--.++.+|+.|.. ...|..++
T Consensus 307 IVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY- 385 (822)
T COG0653 307 IVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIY- 385 (822)
T ss_pred EEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhcc-
Confidence 34577899999998766554 2222222222111 11245667777773 44666666
Q ss_pred cCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc
Q psy3476 372 RIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK 451 (1417)
Q Consensus 372 ~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~ 451 (1417)
+..++.+|... |+.- .+.+...+ .-....+..++..|...+ ..+.+|||-..+.+..+.+.+.|.+
T Consensus 386 -~l~vv~iPTnr-p~~R--~D~~D~vy----~t~~~K~~Aiv~~I~~~~--~~gqPvLvgT~sie~SE~ls~~L~~---- 451 (822)
T COG0653 386 -GLDVVVIPTNR-PIIR--LDEPDLVY----KTEEEKFKAIVEDIKERH--EKGQPVLVGTVSIEKSELLSKLLRK---- 451 (822)
T ss_pred -CCceeeccCCC-cccC--CCCccccc----cchHHHHHHHHHHHHHHH--hcCCCEEEcCcceecchhHHHHHHh----
Confidence 34444444321 1110 00000000 011123455666666655 4478999999999999999999987
Q ss_pred cCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeE-----------EEEcCCcccceecccCCCcc
Q psy3476 452 SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR-----------FVVDSGKVKEMSYDVTAKMS 520 (1417)
Q Consensus 452 ~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~-----------~VIdsG~~k~~~yD~~~~~~ 520 (1417)
.++....|.+.-...|-..+-++-..| -|-||||.|.+|-||---. +||-+.+.-
T Consensus 452 -~~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhE----------- 517 (822)
T COG0653 452 -AGIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHE----------- 517 (822)
T ss_pred -cCCCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccch-----------
Confidence 445445555554445544454444443 4789999999999984211 334322211
Q ss_pred ccceeecCHhhHHhhcCcCCCCC-CCeEE
Q psy3476 521 TLQEFWISKASAEQRKGRAGRTG-PGVCY 548 (1417)
Q Consensus 521 ~l~~~~ISkasa~QR~GRAGR~g-~G~cy 548 (1417)
|+-=-.|-.||+||.| ||..-
T Consensus 518 -------SRRIDnQLRGRsGRQGDpG~S~ 539 (822)
T COG0653 518 -------SRRIDNQLRGRAGRQGDPGSSR 539 (822)
T ss_pred -------hhHHHHHhhcccccCCCcchhh
Confidence 1222238899999999 88764
No 162
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.24 E-value=5e-06 Score=107.16 Aligned_cols=200 Identities=20% Similarity=0.212 Sum_probs=122.7
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhc----------------------cCCCCcEEEEccCC--CHHHHHHHhcc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLH----------------------STAEVKIILMSATI--NIELFHTYFNR 372 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~----------------------~r~~~qvIlmSATl--n~~~~~~~f~~ 372 (1417)
..+=.++||||.-.|...+--+..=+..... .+--.++-+||.|. ....|.+.+
T Consensus 507 V~dgkV~IVDe~TGRim~gRr~sdGLHQAIEAKE~V~I~~e~qT~AtIT~QnyFR~Y~kLsGMTGTA~tea~Ef~~IY-- 584 (1112)
T PRK12901 507 VMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYHKLAGMTGTAETEAGEFWDIY-- 584 (1112)
T ss_pred EECCEEEEEeCCCCccCCCCccchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHh--
Confidence 3455789999987666554222111111111 01224788999999 355677777
Q ss_pred CceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhcc
Q psy3476 373 IAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKS 452 (1417)
Q Consensus 373 ~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~ 452 (1417)
+..++.+|... |+.-.-.+... + ......+..+++.+.+.+ ..+.+|||-+.+.+..+.+++.|..
T Consensus 585 ~L~Vv~IPTnr-P~~R~D~~D~v--y----~t~~eK~~Aii~ei~~~~--~~GrPVLVGT~SVe~SE~lS~~L~~----- 650 (1112)
T PRK12901 585 KLDVVVIPTNR-PIARKDKEDLV--Y----KTKREKYNAVIEEITELS--EAGRPVLVGTTSVEISELLSRMLKM----- 650 (1112)
T ss_pred CCCEEECCCCC-CcceecCCCeE--e----cCHHHHHHHHHHHHHHHH--HCCCCEEEEeCcHHHHHHHHHHHHH-----
Confidence 56677777431 22111111100 0 001123456666666655 3477999999999999999999987
Q ss_pred CCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC--------CeEEEEcCCcccceecccCCCccccce
Q psy3476 453 QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID--------GIRFVVDSGKVKEMSYDVTAKMSTLQE 524 (1417)
Q Consensus 453 ~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP--------~V~~VIdsG~~k~~~yD~~~~~~~l~~ 524 (1417)
.++..-.|++.....|-..|-++-..| .|-||||.|.||-||- +=-+||-+.+
T Consensus 651 ~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTer----------------- 711 (1112)
T PRK12901 651 RKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTER----------------- 711 (1112)
T ss_pred cCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEEccC-----------------
Confidence 455555666665555555555555555 5899999999999986 2235554322
Q ss_pred eecCHhhHHhhcCcCCCCC-CCeEEEecC
Q psy3476 525 FWISKASAEQRKGRAGRTG-PGVCYRLYS 552 (1417)
Q Consensus 525 ~~ISkasa~QR~GRAGR~g-~G~cy~L~t 552 (1417)
+-|+---.|-.|||||.| ||.+-.+.+
T Consensus 712 -heSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 712 -HESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred -CCcHHHHHHHhcccccCCCCCcceEEEE
Confidence 234444459999999999 898754544
No 163
>KOG0385|consensus
Probab=98.18 E-value=6.9e-05 Score=92.93 Aligned_cols=115 Identities=23% Similarity=0.286 Sum_probs=86.9
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC---CceEEEecchhhccCCcCCe
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG---LRKCIVSTNIAETSITIDGI 499 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G---~rkVLVATnIae~GIdIP~V 499 (1417)
..+..||||-- ...+-+.|..+.. -.++...-+.|.++.++|...++.|..- +.-.+++|-...-|||+-+.
T Consensus 485 ~~GhRVLIFSQ----mt~mLDILeDyc~-~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aA 559 (971)
T KOG0385|consen 485 EQGHRVLIFSQ----MTRMLDILEDYCM-LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAA 559 (971)
T ss_pred hCCCeEEEeHH----HHHHHHHHHHHHH-hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccc
Confidence 34668999953 3334444444332 2678899999999999999999888643 45578999999999999999
Q ss_pred EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 500 RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
+.||- ||..-+. -.--+|.+|+-|.|-..+=++|||+++...+
T Consensus 560 DtVIl--------yDSDWNP-------Q~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 560 DTVIL--------YDSDWNP-------QVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred cEEEE--------ecCCCCc-------hhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 99997 7765443 2344677888888888899999999987665
No 164
>KOG0387|consensus
Probab=98.15 E-value=0.00019 Score=89.64 Aligned_cols=115 Identities=18% Similarity=0.265 Sum_probs=89.9
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCc--eEEEecchhhccCCcCCeEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR--KCIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~r--kVLVATnIae~GIdIP~V~~ 501 (1417)
.+..+|+|-.++....-+-..|.. ..++..+.+.|..+...|..+.+.|.++.. -.|++|-+..-|+|+-+.+-
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~----~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnR 620 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRR----AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANR 620 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHh----cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCce
Confidence 355899999999888877777763 368999999999999999999999997753 46889999999999999888
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
||- |||.-+.+. -.++.-|+-|-|-...=.+|||.+....+
T Consensus 621 VII--------fDPdWNPSt-------D~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 621 VII--------FDPDWNPST-------DNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred EEE--------ECCCCCCcc-------chHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 876 887655443 34555566665555566789999876554
No 165
>KOG0384|consensus
Probab=97.85 E-value=0.00025 Score=91.97 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=94.0
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCC---CCceEEEecchhhccCCcCCeE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE---GLRKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~---G~rkVLVATnIae~GIdIP~V~ 500 (1417)
.+..||||--=+.-.+-++++|.. .++..--|.|++..+-|+..++.|.. ...-.|+||-...-|||+-..+
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~-----r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatAD 772 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSL-----RGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATAD 772 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHH-----cCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccc
Confidence 456899998777777777777765 67888899999999999999998864 3467899999999999999887
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHHH-hhccCCCcccccChHHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLL 576 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~~-l~~~~~pEI~r~~L~~~l 576 (1417)
-||- ||..-+.+.=. |-..||-|-| .=.+|||+|+..++. +-+- --....|+..+
T Consensus 773 TVII--------FDSDWNPQNDL----------QAqARaHRIGQkk~VnVYRLVTk~TvEeEilER---Ak~KmvLD~aV 831 (1373)
T KOG0384|consen 773 TVII--------FDSDWNPQNDL----------QAQARAHRIGQKKHVNVYRLVTKNTVEEEILER---AKLKMVLDHAV 831 (1373)
T ss_pred eEEE--------eCCCCCcchHH----------HHHHHHHhhcccceEEEEEEecCCchHHHHHHH---HHHHhhhHHHH
Confidence 7775 66544332222 4444555555 467899999887763 2110 11223567777
Q ss_pred HHHHhh
Q psy3476 577 LSLVCM 582 (1417)
Q Consensus 577 L~lk~l 582 (1417)
+|....
T Consensus 832 IQ~m~t 837 (1373)
T KOG0384|consen 832 IQRMDT 837 (1373)
T ss_pred HHhhcc
Confidence 766543
No 166
>COG4889 Predicted helicase [General function prediction only]
Probab=97.82 E-value=4.8e-05 Score=94.72 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=74.8
Q ss_pred cEEEEeCCHHHHHHHHHHHHh----hh----hccCCcE--EEEecCCCCHHHHHHHhc---cCCCCCceEEEecchhhcc
Q psy3476 427 DVLIFMSGISEISSIVRAAQE----YN----EKSQGWI--VLPLHSTLSLEEQDRVFH---YAPEGLRKCIVSTNIAETS 493 (1417)
Q Consensus 427 ~iLVFl~~~~eie~la~~L~~----~~----~~~~~~~--V~~LHs~Ls~~eR~~v~~---~f~~G~rkVLVATnIae~G 493 (1417)
..+-||.+.++...+++.+.. |. ....++. +-...|.|...+|...+. .|++..-||+--.-.+..|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 467788777776666665432 11 1123344 344567888888865543 5677888999888899999
Q ss_pred CCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeE
Q psy3476 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547 (1417)
Q Consensus 494 IdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~c 547 (1417)
||+|..+-||- ||+...+...+ |-+||.-|..+|+-
T Consensus 542 VDVPaLDsViF--------f~pr~smVDIV----------QaVGRVMRKa~gK~ 577 (1518)
T COG4889 542 VDVPALDSVIF--------FDPRSSMVDIV----------QAVGRVMRKAKGKK 577 (1518)
T ss_pred CCccccceEEE--------ecCchhHHHHH----------HHHHHHHHhCcCCc
Confidence 99999999997 88887666655 99999999887653
No 167
>KOG0390|consensus
Probab=97.76 E-value=0.0004 Score=88.74 Aligned_cols=105 Identities=18% Similarity=0.275 Sum_probs=77.7
Q ss_pred EEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC--C-ceEEEecchhhccCCcCCeEEEEcC
Q psy3476 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG--L-RKCIVSTNIAETSITIDGIRFVVDS 505 (1417)
Q Consensus 429 LVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G--~-rkVLVATnIae~GIdIP~V~~VIds 505 (1417)
.|.+.....+..+.+.+-++ .++.++.|||.++..+|+.+.+.|.+- . .-.+.+|-.-+-||++=+...||-
T Consensus 598 ~v~Isny~~tldl~e~~~~~----~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil- 672 (776)
T KOG0390|consen 598 SVLISNYTQTLDLFEQLCRW----RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL- 672 (776)
T ss_pred EEEeccHHHHHHHHHHHHhh----cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE-
Confidence 34445555555555555442 378999999999999999999999643 3 345677788889999999888887
Q ss_pred CcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHH
Q psy3476 506 GKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQ 555 (1417)
Q Consensus 506 G~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~ 555 (1417)
||+.-+...=. |-++||=|.| +-+.|+|.+...
T Consensus 673 -------~D~dWNPa~d~----------QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 673 -------FDPDWNPAVDQ----------QAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred -------eCCCCCchhHH----------HHHHHhccCCCcceEEEEEeecCCC
Confidence 88776544433 7788888887 677899987653
No 168
>KOG0392|consensus
Probab=97.73 E-value=0.0011 Score=86.07 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=84.0
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC-CceE-EEecchhhccCCcCCeEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG-LRKC-IVSTNIAETSITIDGIRFV 502 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G-~rkV-LVATnIae~GIdIP~V~~V 502 (1417)
+.++||||--+..++-+.+-|.+ +..+.+.-..|.|..++.+|.++.++|.++ .+.| +++|-+..-|+|+-+.+-|
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k--~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTV 1417 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFK--KYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTV 1417 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhh--hhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceE
Confidence 35799999999988888877754 223455667899999999999999999998 5776 5688999999999999988
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHH
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYS 557 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~ 557 (1417)
|- -+-.|+|-+ . +|-.-||-|-| -=.+|||+++...+
T Consensus 1418 VF----vEHDWNPMr---D-----------LQAMDRAHRIGQKrvVNVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1418 VF----VEHDWNPMR---D-----------LQAMDRAHRIGQKRVVNVYRLITRGTLE 1457 (1549)
T ss_pred EE----EecCCCchh---h-----------HHHHHHHHhhcCceeeeeeeehhcccHH
Confidence 85 111133322 2 26666666666 35589999887654
No 169
>PF13245 AAA_19: Part of AAA domain
Probab=97.35 E-value=0.00041 Score=64.66 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=41.1
Q ss_pred HHhcCCeEEEEcCCCcchhHHHHHHHHHcC------CCcEEEecchHHHHHHHHHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQIPQYLVQAG------FQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ipq~ile~~------~~~i~~tqPrr~aa~~~a~rv 100 (1417)
++.++++++|.||.|||||+.+.+.+.+.. ..+|++..|++.++..+.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 555678888999999999987666554432 468999999999999998887
No 170
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.28 E-value=0.0075 Score=73.62 Aligned_cols=245 Identities=15% Similarity=0.152 Sum_probs=150.8
Q ss_pred cccccchhhhhhcccccc----ccccccCCCCccEEEEecCccc-ccCcchHHHHHHHHhccCC----------------
Q psy3476 292 LHGDFLLGVIKCLLHSTV----EVAADNFLSSYDVLVLDEIHER-HLHGDFLLGVIKCLLHSTA---------------- 350 (1417)
Q Consensus 292 ~~~d~~lgt~~~L~~~~~----~~~~d~~L~~~~~VIlDEaHER-~l~~d~ll~llk~l~~~r~---------------- 350 (1417)
.++|+++++|-.|-...- ......+|+.+.++|+|.+|-. +-+.+.+..+++.+...+.
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 357888888876542111 1233367999999999999921 2233555555555544331
Q ss_pred -----CCcEEEEccCCCHH---HHHHHhccCceEEEeCCc----------ccceeEEeccccccccccccCCCCChH---
Q psy3476 351 -----EVKIILMSATINIE---LFHTYFNRIAKIIKVPGR----------LYPIQLEYHPIVELDRTKSEKLDPGPY--- 409 (1417)
Q Consensus 351 -----~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr----------~~pv~v~~~~~~~~~~~~~~~~~~~~~--- 409 (1417)
-.|.|++|+..+++ .+...+.+-...+.+... ..++...|.......... .....+
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~---~~d~Rf~yF 286 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPAD---DPDARFKYF 286 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcch---hhhHHHHHH
Confidence 26899999998765 233333221222221111 112222222211111000 000111
Q ss_pred -HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc
Q psy3476 410 -IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488 (1417)
Q Consensus 410 -~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn 488 (1417)
..++..+.+ ....+.+|||+|+.=+-..+-..|++ .++....+|--.+..+-.+.-..|..|+.+|++-|-
T Consensus 287 ~~~iLP~l~~---~~~~~~~LIfIPSYfDfVRlRN~lk~-----~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TE 358 (442)
T PF06862_consen 287 TKKILPQLKR---DSKMSGTLIFIPSYFDFVRLRNYLKK-----ENISFVQISEYTSNSDISRARSQFFHGRKPILLYTE 358 (442)
T ss_pred HHHHHHHhhh---ccCCCcEEEEecchhhhHHHHHHHHh-----cCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEh
Confidence 123333322 35568899999999999999888875 678888999889999988889999999999999995
Q ss_pred hhh--ccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCC----CCCCeEEEecCHHHHHHhhcc
Q psy3476 489 IAE--TSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR----TGPGVCYRLYSEEQYSLLAEY 562 (1417)
Q Consensus 489 Iae--~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR----~g~G~cy~L~t~~~~~~l~~~ 562 (1417)
=+- +=..|-+|+.||- |.+|....-|. ++..+.+.... .+...|..||++-+.-.++..
T Consensus 359 R~HFfrRy~irGi~~viF--------Y~~P~~p~fY~-------El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIF--------YGPPENPQFYS-------ELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred HHhhhhhceecCCcEEEE--------ECCCCChhHHH-------HHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 432 3467888999997 88887765554 33444443332 225889999999887666543
No 171
>KOG1000|consensus
Probab=97.24 E-value=0.051 Score=65.52 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=65.7
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCC--ceEEEecchhhccCCcCC
Q psy3476 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL--RKCIVSTNIAETSITIDG 498 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~--rkVLVATnIae~GIdIP~ 498 (1417)
...++.+.+||+.-..-.+.+...+.+ .++..+.+.|..+..+|...-+.|.... +--|++-..+..|+|+.+
T Consensus 488 ~d~~~~KflVFaHH~~vLd~Iq~~~~~-----r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tA 562 (689)
T KOG1000|consen 488 PDAPPRKFLVFAHHQIVLDTIQVEVNK-----RKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTA 562 (689)
T ss_pred ccCCCceEEEEehhHHHHHHHHHHHHH-----cCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeec
Confidence 334567899999999888888888876 6788899999999999999999887553 344778888999999999
Q ss_pred eEEEEc
Q psy3476 499 IRFVVD 504 (1417)
Q Consensus 499 V~~VId 504 (1417)
...||-
T Consensus 563 a~~VVF 568 (689)
T KOG1000|consen 563 ASVVVF 568 (689)
T ss_pred cceEEE
Confidence 998885
No 172
>PRK01172 ski2-like helicase; Provisional
Probab=97.11 E-value=0.00017 Score=94.01 Aligned_cols=119 Identities=23% Similarity=0.221 Sum_probs=77.8
Q ss_pred hhhhHHHhhhccccccC---CCcccc-cccHHHH---hhhh-cCCcc--------chhhcchHHHHHHHHHhcCCCcccC
Q psy3476 795 EEEEEEEEGERLESRTG---PGVCYR-LYSEEQY---SLLA-EYSTP--------EIRRVSIDSLLLSLVCMGLGDVRKF 858 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~---pG~CyR-Lyt~~~~---~~l~-~~~~P--------EI~r~~L~~~vL~lk~~g~~~~~~f 858 (1417)
+|..+..||.|||||.+ .|.|+= +++++.+ .++- ..+.| ++.+.++...+..-...+..++.+|
T Consensus 348 ~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~ 427 (674)
T PRK01172 348 LSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILF 427 (674)
T ss_pred CCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHH
Confidence 68889999999999986 555443 3444333 3322 23222 4444443333322222222444444
Q ss_pred ---CCC--CCCC---ccchHHHHHHHhhcccccccc--ccchhhhhcccCCCCccccchhhhccc
Q psy3476 859 ---PFL--EAPP---AENIESSVRSLTQHGAIDSKE--RVTTLGRFLSDLPVDIPLGKMLVFGSM 913 (1417)
Q Consensus 859 ---~~l--~~P~---~~~l~~A~~~L~~lgald~~~--~lT~lG~~l~~lPvdp~lak~Ll~~~~ 913 (1417)
.|+ ++++ .+.++.|++.|...|+|++++ .+|++|+.++.+|++|..++++..+..
T Consensus 428 l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 492 (674)
T PRK01172 428 YNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFD 492 (674)
T ss_pred HHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 444 4432 456899999999999998654 579999999999999999999876644
No 173
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.10 E-value=0.0041 Score=79.39 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH----cCCCcEEEecchHHHHHHHHHH
Q psy3476 43 YKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ----AGFQRIACTQPRRIACISLSKR 99 (1417)
Q Consensus 43 ~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile----~~~~~i~~tqPrr~aa~~~a~r 99 (1417)
+-+.|.+++.+++.+++.|+||+|||......++. ....+++|.-|++..+.|+.+.
T Consensus 5 ~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~ 65 (636)
T TIGR03117 5 FYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSE 65 (636)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHH
Confidence 34667888889999999999999999876555443 2246899999999998888863
No 174
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.76 E-value=0.007 Score=66.76 Aligned_cols=58 Identities=28% Similarity=0.504 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhc--CCeEEEEcCCCcchhHHHHHH---HHHcCCCcEEEecchHHHHHHHHHH
Q psy3476 41 AQYKQEIIDTVLK--ERVVIIAGDTGCGKSTQIPQY---LVQAGFQRIACTQPRRIACISLSKR 99 (1417)
Q Consensus 41 ~~~q~~il~~i~~--~~~~iI~a~TGsGKTt~ipq~---ile~~~~~i~~tqPrr~aa~~~a~r 99 (1417)
..-|.+++..+.. +++++|.|+.|||||+.+-.. +.+.+ .+|+++.|+.-|+..+.+.
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHHHHHHHHHh
Confidence 3568888888853 358999999999999864432 23333 6788888887777666554
No 175
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.74 E-value=0.014 Score=76.04 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=94.4
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCc-eEEEe
Q psy3476 408 PYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR-KCIVS 486 (1417)
Q Consensus 408 ~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~r-kVLVA 486 (1417)
....+...+..... ..+|.+|||+|+.+..+.+++.+..... ......+|..+.. ..++.|+.+.- .++|+
T Consensus 463 ~~~~~~~~i~~~~~-~~~~~~lvlF~Sy~~l~~~~~~~~~~~~----~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~ 534 (654)
T COG1199 463 LLAKLAAYLREILK-ASPGGVLVLFPSYEYLKRVAERLKDERS----TLPVLTQGEDERE---ELLEKFKASGEGLILVG 534 (654)
T ss_pred HHHHHHHHHHHHHh-hcCCCEEEEeccHHHHHHHHHHHhhcCc----cceeeecCCCcHH---HHHHHHHHhcCCeEEEe
Confidence 34455555555544 3456999999999999999999876211 1345567776655 44444444333 89999
Q ss_pred cchhhccCCcCCe--EEEEcCCcccce----------ecccCCC--ccccceeecCHhhHHhhcCcCCCCC--CCeEEEe
Q psy3476 487 TNIAETSITIDGI--RFVVDSGKVKEM----------SYDVTAK--MSTLQEFWISKASAEQRKGRAGRTG--PGVCYRL 550 (1417)
Q Consensus 487 TnIae~GIdIP~V--~~VIdsG~~k~~----------~yD~~~~--~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy~L 550 (1417)
|..+..|||+|+- +.||-.|..-.. .|....+ .-.+...+.......|-+||+=|.. .|.++.+
T Consensus 535 ~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 535 GGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred eccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 9999999999975 555544543221 1111111 1112223444556789999999976 4888765
Q ss_pred cC---HHHH-HHhhccCCCcccccCh
Q psy3476 551 YS---EEQY-SLLAEYSTPEIRRVSI 572 (1417)
Q Consensus 551 ~t---~~~~-~~l~~~~~pEI~r~~L 572 (1417)
=. ...+ ..+++...+.+.....
T Consensus 615 D~R~~~~~y~~~l~~~l~~~~~~~~~ 640 (654)
T COG1199 615 DKRYATKRYGKLLLDSLPPFPKSKDL 640 (654)
T ss_pred cccchhhhHHHHHHHhCCCCcccccc
Confidence 32 2223 3455555555554433
No 176
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.57 E-value=0.01 Score=76.04 Aligned_cols=62 Identities=24% Similarity=0.425 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHH---HHcC---CCcEEEecchHHHHHHHHHHHHHH
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL---VQAG---FQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~i---le~~---~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.+|++++.....+++++|.|++|+||||.+-..+ .+.. ..+|.++.|+.-||..+.+.+...
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 6899998888899999999999999999865544 2322 247999999999988887766543
No 177
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.55 E-value=0.014 Score=74.63 Aligned_cols=62 Identities=26% Similarity=0.421 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHH---HHcC----CCcEEEecchHHHHHHHHHHHHHH
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL---VQAG----FQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~i---le~~----~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.+|++++.....+++++|+|+.|+||||.+-..+ .+.. ..+|.++.|+--||..+.+.+...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 6788899999999999999999999999765543 3322 147999999998888777766443
No 178
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.40 E-value=0.024 Score=74.20 Aligned_cols=128 Identities=11% Similarity=0.127 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCC----CCCceEE
Q psy3476 409 YIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAP----EGLRKCI 484 (1417)
Q Consensus 409 ~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~----~G~rkVL 484 (1417)
...+.+.|.+.+. .+|.+|||+++.+..+.+++.+... .+..+ ..++.. .+.++++.|+ .|...|+
T Consensus 520 ~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~----~~~~l-l~Q~~~---~~~~ll~~f~~~~~~~~~~VL 589 (697)
T PRK11747 520 TAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRD----LRLML-LVQGDQ---PRQRLLEKHKKRVDEGEGSVL 589 (697)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHh----cCCcE-EEeCCc---hHHHHHHHHHHHhccCCCeEE
Confidence 4456666666654 3455899999999999999998652 12233 235543 3555664444 5778899
Q ss_pred EecchhhccCCcCC--eEEEEcCCcccceecccCCC--------------ccccce--eecCHhhHHhhcCcCCCCC--C
Q psy3476 485 VSTNIAETSITIDG--IRFVVDSGKVKEMSYDVTAK--------------MSTLQE--FWISKASAEQRKGRAGRTG--P 544 (1417)
Q Consensus 485 VATnIae~GIdIP~--V~~VIdsG~~k~~~yD~~~~--------------~~~l~~--~~ISkasa~QR~GRAGR~g--~ 544 (1417)
++|..+..|||+|+ .+.||-.|+. |.+|.. -+.+.. .|--...+.|-+||.=|.. .
T Consensus 590 ~g~~sf~EGVD~pGd~l~~vII~kLP----F~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~ 665 (697)
T PRK11747 590 FGLQSFAEGLDLPGDYLTQVIITKIP----FAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDR 665 (697)
T ss_pred EEeccccccccCCCCceEEEEEEcCC----CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCce
Confidence 99999999999987 6777766653 222221 111111 1122334789999999987 5
Q ss_pred CeEEEe
Q psy3476 545 GVCYRL 550 (1417)
Q Consensus 545 G~cy~L 550 (1417)
|..+.+
T Consensus 666 G~i~il 671 (697)
T PRK11747 666 GRVTIL 671 (697)
T ss_pred EEEEEE
Confidence 877655
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.39 E-value=0.0094 Score=66.15 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCCe-EEEEcCCCcchhHHHHHHHHHc----------CCCcEEEecchHHHHHHHHHHHHH
Q psy3476 41 AQYKQEIIDTVLKERV-VIIAGDTGCGKSTQIPQYLVQA----------GFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~-~iI~a~TGsGKTt~ipq~ile~----------~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
...|.+++..+.+... ++|.||.|||||+.+...+... ...+|+++.|+..|+..+.+++.+
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4568888888888876 9999999999998776655443 225799999999999999998877
No 180
>KOG1803|consensus
Probab=96.38 E-value=0.0046 Score=76.20 Aligned_cols=60 Identities=18% Similarity=0.385 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcC-CeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHHHHHHHHHHH
Q psy3476 42 QYKQEIIDTVLKE-RVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVA 101 (1417)
Q Consensus 42 ~~q~~il~~i~~~-~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~aa~~~a~rva 101 (1417)
..|.+++....+. ...+|.||+|+|||+.+...|... ...+|+|+.|+.+|.-.+-+|+.
T Consensus 188 ~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 188 SSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred HHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 4566777766655 789999999999997655555442 22689999999999999888865
No 181
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.34 E-value=0.0088 Score=66.04 Aligned_cols=51 Identities=25% Similarity=0.338 Sum_probs=35.5
Q ss_pred CeEEEEcCCCcchhHHHHHHHHH---cCC-CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 55 RVVIIAGDTGCGKSTQIPQYLVQ---AGF-QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~ile---~~~-~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
++++++||||+||||.+...... .+. ..++++-.-|++|..-.+..|+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc
Confidence 47899999999999976543322 222 2467777778887777777777664
No 182
>KOG0952|consensus
Probab=96.25 E-value=0.002 Score=82.96 Aligned_cols=147 Identities=15% Similarity=0.167 Sum_probs=88.3
Q ss_pred ccccchhhhhhccccccccccccCCCCccEEEEecCcccccC-cchHHHHHHHHhc----cCCCCcEEEEccCC-CHHHH
Q psy3476 293 HGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLH-GDFLLGVIKCLLH----STAEVKIILMSATI-NIELF 366 (1417)
Q Consensus 293 ~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~-~d~ll~llk~l~~----~r~~~qvIlmSATl-n~~~~ 366 (1417)
++++++.||++++.....|.....+.+++.+|+||.|.-..+ +..+..+..+... ..+..+++++|--+ |..++
T Consensus 1020 ~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dl 1099 (1230)
T KOG0952|consen 1020 EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDL 1099 (1230)
T ss_pred cCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHH
Confidence 346677888888888888888899999999999999933322 2233222222211 23456777776444 89999
Q ss_pred HHHhccC-ceEEEeCCcccceeEEecccccccc-ccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHH
Q psy3476 367 HTYFNRI-AKIIKVPGRLYPIQLEYHPIVELDR-TKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRA 444 (1417)
Q Consensus 367 ~~~f~~~-~~vi~v~gr~~pv~v~~~~~~~~~~-~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~ 444 (1417)
++|++.. .+.+.-.-|+.|.++++...+...+ ......+. ...+.+... .+..++|||+.+++.....+..
T Consensus 1100 a~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnk----pa~qaik~~---sp~~p~lifv~srrqtrlta~~ 1172 (1230)
T KOG0952|consen 1100 ADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNK----PAFQAIKTH---SPIKPVLIFVSSRRQTRLTALD 1172 (1230)
T ss_pred HHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhccc----HHHHHHhcC---CCCCceEEEeecccccccchHh
Confidence 9999532 2223334567777777665554222 11111111 123333322 4568999999988776655554
Q ss_pred HH
Q psy3476 445 AQ 446 (1417)
Q Consensus 445 L~ 446 (1417)
|.
T Consensus 1173 li 1174 (1230)
T KOG0952|consen 1173 LI 1174 (1230)
T ss_pred HH
Confidence 43
No 183
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.22 E-value=0.025 Score=74.36 Aligned_cols=196 Identities=14% Similarity=0.095 Sum_probs=105.4
Q ss_pred CCcEEEEccCC-CHHHHHHHhccCceEEEeCCcccce---eEEecccccc----ccccccCCCCChHHHHHHHHHhhCCC
Q psy3476 351 EVKIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPI---QLEYHPIVEL----DRTKSEKLDPGPYIRILSIIDKKYPR 422 (1417)
Q Consensus 351 ~~qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv---~v~~~~~~~~----~~~~~~~~~~~~~~~il~~l~~~~~~ 422 (1417)
-..+|++|||+ +.+.|.+.++-..+.....+..+|- .+........ ........++.....+...|.+...
T Consensus 441 ~~svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~- 519 (705)
T TIGR00604 441 VRSVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSK- 519 (705)
T ss_pred cCEEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhh-
Confidence 34699999999 6777887775322222111122221 1111111000 0000111112234455566666554
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhh--c-cCCcEEEEecCCCCHHHHHHHhccCCC----CCceEEEec--chhhcc
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNE--K-SQGWIVLPLHSTLSLEEQDRVFHYAPE----GLRKCIVST--NIAETS 493 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~--~-~~~~~V~~LHs~Ls~~eR~~v~~~f~~----G~rkVLVAT--nIae~G 493 (1417)
..+|.+|||.|+....+.+++.+..... . .....++.=..+. .++..+++.|+. |.-.|++|+ ..+..|
T Consensus 520 ~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~--~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEG 597 (705)
T TIGR00604 520 IIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA--QETSDALERYKQAVSEGRGAVLLSVAGGKVSEG 597 (705)
T ss_pred cCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc--chHHHHHHHHHHHHhcCCceEEEEecCCcccCc
Confidence 3468899999999999999988765211 0 0111222211221 466778877743 455699999 889999
Q ss_pred CCcCC--eEEEEcCCcccceecccCC-------------Ccc-ccceeecCHhhHHhhcCcCCCCCC--CeEEEe
Q psy3476 494 ITIDG--IRFVVDSGKVKEMSYDVTA-------------KMS-TLQEFWISKASAEQRKGRAGRTGP--GVCYRL 550 (1417)
Q Consensus 494 IdIP~--V~~VIdsG~~k~~~yD~~~-------------~~~-~l~~~~ISkasa~QR~GRAGR~g~--G~cy~L 550 (1417)
||++| .+.||-.|+.-....|+.. +.. .+. .+-.--...|-+||+=|... |..+.+
T Consensus 598 IDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 598 IDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFY-EFDAMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred cccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHH-HHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 99997 4777777775421111100 000 011 11122456799999999884 665543
No 184
>PRK06526 transposase; Provisional
Probab=96.15 E-value=0.015 Score=66.82 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=18.4
Q ss_pred HHHhcCCeEEEEcCCCcchhHH
Q psy3476 49 DTVLKERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 49 ~~i~~~~~~iI~a~TGsGKTt~ 70 (1417)
+.+..+.++++.||+|+|||+.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHL 114 (254)
T ss_pred chhhcCceEEEEeCCCCchHHH
Confidence 4456778999999999999973
No 185
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.12 Score=62.83 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=33.2
Q ss_pred CCCccEEEEecCcccccCcc-hHHHHHHHHhccCCC-CcEEEEccCCCHHHHHHHh
Q psy3476 317 LSSYDVLVLDEIHERHLHGD-FLLGVIKCLLHSTAE-VKIILMSATINIELFHTYF 370 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d-~ll~llk~l~~~r~~-~qvIlmSATln~~~~~~~f 370 (1417)
+.++++||||++. |+.... .+..+.+.+....++ -.++++|||...+.+.+.|
T Consensus 252 ~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 252 SKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred hCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 4678999999998 654322 222333333333333 4678899999777666665
No 186
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=96.07 E-value=0.036 Score=64.31 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=22.9
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHH---HcCCC----cEEEecchHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLV---QAGFQ----RIACTQPRRI 91 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~il---e~~~~----~i~~tqPrr~ 91 (1417)
....-.+++-++|+|||.++..++. +.... +++|..|..+
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l 69 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSL 69 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccch
Confidence 3456789999999999988776654 33322 3777777633
No 187
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.87 E-value=0.049 Score=71.48 Aligned_cols=61 Identities=23% Similarity=0.403 Sum_probs=46.2
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHH--HH-cC-CCcEEEecchHHHHHHH
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL--VQ-AG-FQRIACTQPRRIACISL 96 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~i--le-~~-~~~i~~tqPrr~aa~~~ 96 (1417)
....+...|.+++..+..+++++|.|+.|+||||.+-..+ ++ .+ ..+|+++.|+--||..+
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRL 384 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHH
Confidence 4466788999999999999999999999999999754332 22 22 25688888887776544
No 188
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.87 E-value=0.19 Score=60.63 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=36.5
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccCCCHHHHHHHh
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSATln~~~~~~~f 370 (1417)
.+.++++|.||=+- |+........=++.+.... +.--.+.+|||...+++.+.+
T Consensus 278 ~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 278 ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHH
Confidence 46778999999997 6655544444444444433 444567799999877777666
No 189
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.59 E-value=0.12 Score=52.10 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=20.6
Q ss_pred HHHHHHHHhc--CCeEEEEcCCCcchhHH
Q psy3476 44 KQEIIDTVLK--ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 44 q~~il~~i~~--~~~~iI~a~TGsGKTt~ 70 (1417)
.+++...+.. +..++|.||+|||||+.
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTL 35 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 3445555555 78999999999999974
No 190
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.098 Score=63.18 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=32.6
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhcc-CCCCcEEEEccCCCHHHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHS-TAEVKIILMSATINIELF 366 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~-r~~~qvIlmSATln~~~~ 366 (1417)
+.+.++|+||++- +....+.+...+..+... .+.-.++++|||...+.+
T Consensus 213 l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 213 LRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred hcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 5678999999997 554445555555555332 344568889999965443
No 191
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.38 E-value=0.26 Score=60.94 Aligned_cols=52 Identities=25% Similarity=0.324 Sum_probs=29.4
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhc-c-CCCCcEEEEccCCCHHHHHHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLH-S-TAEVKIILMSATINIELFHTY 369 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~-~-r~~~qvIlmSATln~~~~~~~ 369 (1417)
+.++++||||.+- +.....-....+..+.. . .+....+++|||.....+.+.
T Consensus 297 ~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 297 LRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred hCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 3468999999996 33222222222333322 2 334557889999965555443
No 192
>PRK10536 hypothetical protein; Provisional
Probab=95.34 E-value=0.025 Score=64.54 Aligned_cols=54 Identities=19% Similarity=0.377 Sum_probs=44.2
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHH----HcCCCcEEEecch
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV----QAGFQRIACTQPR 89 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~il----e~~~~~i~~tqPr 89 (1417)
.--|....|...+.++.+++++++.||+|||||+....+.+ +..+.+|+++.|.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 44677889999999999999999999999999997665544 3345678888876
No 193
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.33 E-value=0.019 Score=63.59 Aligned_cols=51 Identities=24% Similarity=0.425 Sum_probs=36.4
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHH----HHcCCCcEEEecch
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL----VQAGFQRIACTQPR 89 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~i----le~~~~~i~~tqPr 89 (1417)
|....|...++++.+.+++++.||.|||||....... .+..+.+|+++.|.
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~ 58 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPP 58 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 6678899999999999999999999999998655443 33445789999876
No 194
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.31 E-value=0.04 Score=71.33 Aligned_cols=65 Identities=25% Similarity=0.356 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHHhcC-CeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHHHHHHHHHHHHH
Q psy3476 39 PVAQYKQEIIDTVLKE-RVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~-~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.+...|.+++.....+ ++++|.||+|+|||+.+...+.+. ...+|+++.|+..|+..+.+++...
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 4577888888877765 899999999999998776655442 2248999999999999999988763
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.31 E-value=0.036 Score=64.67 Aligned_cols=63 Identities=22% Similarity=0.360 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHH---HHHHcC-C--CcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ---YLVQAG-F--QRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq---~ile~~-~--~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
.-|.+++.. .++.++|.|..|||||+.+.. +++..+ . .+|+|+.+++.||..+..|+...++.
T Consensus 3 ~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 3 DEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 457778777 677889999999999997654 444444 2 58999999999999999999886654
No 196
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.28 E-value=1 Score=61.24 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=37.1
Q ss_pred CCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCC
Q psy3476 476 APEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545 (1417)
Q Consensus 476 f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G 545 (1417)
.++...++||-+|.+=||.|-|...... .|-+-.-..++ |=.-|+-|.-++
T Consensus 589 ~~~d~~kilIV~dmlLTGFDaP~L~TmY---------vDK~Lk~H~L~----------QAisRtNR~~~~ 639 (962)
T COG0610 589 LKDDPLDLLIVVDMLLTGFDAPCLNTLY---------VDKPLKYHNLI----------QAISRTNRVFPG 639 (962)
T ss_pred CcCCCCCEEEEEccccccCCccccceEE---------eccccccchHH----------HHHHHhccCCCC
Confidence 5667799999999999999999765443 34454444455 888888887543
No 197
>PRK14974 cell division protein FtsY; Provisional
Probab=95.27 E-value=0.47 Score=56.77 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=30.5
Q ss_pred CCccEEEEecCccccc-CcchHHHHHHHHhccCCCCcEEEEccCCC
Q psy3476 318 SSYDVLVLDEIHERHL-HGDFLLGVIKCLLHSTAEVKIILMSATIN 362 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l-~~d~ll~llk~l~~~r~~~qvIlmSATln 362 (1417)
.++++|+||.+. |.. +.+++..+.+......++..++++|||..
T Consensus 221 ~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 221 RGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred CCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 357899999998 543 44555555444444567888899999984
No 198
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.16 Score=61.25 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=28.6
Q ss_pred CccEEEEecCcccccCc-chHHHHHHHHhccCCCCcEEEEccCCCHHH
Q psy3476 319 SYDVLVLDEIHERHLHG-DFLLGVIKCLLHSTAEVKIILMSATINIEL 365 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~-d~ll~llk~l~~~r~~~qvIlmSATln~~~ 365 (1417)
++++|+||-+= |+... ..+..+.+.+....++..++.+|||...++
T Consensus 320 ~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 320 RVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred CCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 57899999996 44433 334444444444445555677999985443
No 199
>PRK08181 transposase; Validated
Probab=95.17 E-value=0.16 Score=58.97 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.7
Q ss_pred HHhcCCeEEEEcCCCcchhH
Q psy3476 50 TVLKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt 69 (1417)
.+..++++++.||+|+|||.
T Consensus 102 ~~~~~~nlll~Gp~GtGKTH 121 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSH 121 (269)
T ss_pred HHhcCceEEEEecCCCcHHH
Confidence 45678899999999999996
No 200
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.15 E-value=0.16 Score=67.08 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=42.7
Q ss_pred CCCcHHHHHHHHHHHhc-CCeEEEEcCCCcchhHHHHHHH--HHcCCCcEEEecchHHHHHHH
Q psy3476 37 SLPVAQYKQEIIDTVLK-ERVVIIAGDTGCGKSTQIPQYL--VQAGFQRIACTQPRRIACISL 96 (1417)
Q Consensus 37 ~lp~~~~q~~il~~i~~-~~~~iI~a~TGsGKTt~ipq~i--le~~~~~i~~tqPrr~aa~~~ 96 (1417)
...+..-|.+++..+.. +++++|.|+.|+||||.+-..+ ++....+|+.+.|+-.||..+
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGL 412 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHH
Confidence 35567889999998876 6899999999999998754322 233234577777776665544
No 201
>KOG0391|consensus
Probab=94.64 E-value=0.17 Score=66.30 Aligned_cols=115 Identities=26% Similarity=0.295 Sum_probs=90.4
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCc--eEEEecchhhccCCcCCeE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR--KCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~r--kVLVATnIae~GIdIP~V~ 500 (1417)
.++..+|||.--..-.+-+-..|.- .++.-+-|.|....++|+...++|....+ ..|++|---..|||+-+.+
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLny-----HgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgAD 1348 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNY-----HGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGAD 1348 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhh-----cceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCc
Confidence 4577999997655444444444433 67888899999999999999999987653 5789999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
.||- ||..-+ |.=-+++.-|+-|.|++..=+.|||+++...+
T Consensus 1349 TVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1349 TVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred eEEE--------ecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 9996 886543 22346777788888888889999999987665
No 202
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=94.55 E-value=0.022 Score=61.30 Aligned_cols=121 Identities=19% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc--hhhccCCcCC--e
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN--IAETSITIDG--I 499 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn--Iae~GIdIP~--V 499 (1417)
.+|.+|||+|+.+..+.+.+.+...... .++.+..- ...++..+++.|+++.-.|++++. .+..|||+|+ .
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E--ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchh
Confidence 3689999999999999999988653211 12222222 245678888899999999999998 9999999996 6
Q ss_pred EEEEcCCcccceecccCC-------------CccccceeecCHhhHHhhcCcCCCCCC--CeEEEe
Q psy3476 500 RFVVDSGKVKEMSYDVTA-------------KMSTLQEFWISKASAEQRKGRAGRTGP--GVCYRL 550 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~-------------~~~~l~~~~ISkasa~QR~GRAGR~g~--G~cy~L 550 (1417)
+.||-.|+.-...-|+.. ....+ ..+-.--...|-+||+=|... |..+.+
T Consensus 83 r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~l~Qa~GR~iR~~~D~g~i~ll 147 (167)
T PF13307_consen 83 RAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDW-YLPPAIRKLKQAIGRLIRSEDDYGVIILL 147 (167)
T ss_dssp EEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHH-THHHHHHHHHHHHHCC--STT-EEEEEEE
T ss_pred heeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhH-hhHHHHHHHhhhcCcceeccCCcEEEEEE
Confidence 777776764322222110 00111 112233457789999999884 655544
No 203
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.52 E-value=0.13 Score=66.32 Aligned_cols=39 Identities=28% Similarity=0.500 Sum_probs=27.9
Q ss_pred CCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 318 SSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
.+++++||||+| ++..+-...++|.+..-+++.++|+.+
T Consensus 118 gr~KVIIIDEah--~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVH--MLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChh--hCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 468999999999 455555677888776655666666554
No 204
>KOG1802|consensus
Probab=94.46 E-value=0.076 Score=65.98 Aligned_cols=64 Identities=20% Similarity=0.327 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHH---HHHHHHHcCCCcEEEecchHHHHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQ---IPQYLVQAGFQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~---ipq~ile~~~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
+..-|..+...+.++...+|+||+|+|||.. |...+.+.....|+|..|..+|.-++|+.+-+.
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc
Confidence 3578999999999999999999999999964 444455667789999999999999999887553
No 205
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=94.37 E-value=0.11 Score=61.03 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=27.6
Q ss_pred HHHHHH----HHHHHhcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 41 AQYKQE----IIDTVLKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 41 ~~~q~~----il~~i~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
++.|.+ +.+.+.+++.+++.||||+|||..+....
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~a 48 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLT 48 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHH
Confidence 555665 77778899999999999999997655433
No 206
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=94.37 E-value=0.11 Score=61.03 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=27.6
Q ss_pred HHHHHH----HHHHHhcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 41 AQYKQE----IIDTVLKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 41 ~~~q~~----il~~i~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
++.|.+ +.+.+.+++.+++.||||+|||..+....
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~a 48 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLT 48 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHH
Confidence 555665 77778899999999999999997655433
No 207
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.34 E-value=0.14 Score=61.77 Aligned_cols=17 Identities=35% Similarity=0.739 Sum_probs=14.4
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
++++|.|..|||||..+
T Consensus 2 ~v~~I~G~aGTGKTvla 18 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLA 18 (352)
T ss_pred eEEEEEecCCcCHHHHH
Confidence 57899999999999643
No 208
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.24 E-value=0.3 Score=58.31 Aligned_cols=54 Identities=17% Similarity=0.340 Sum_probs=30.0
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccCCCHHHHHHHh
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSATln~~~~~~~f 370 (1417)
.+.+++++|||+++ ....+++....+..+...+ ..-+-+++|..++++.+.+.+
T Consensus 243 ~l~~~DLLIIDDlG-~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~ 297 (329)
T PRK06835 243 LLINCDLLIIDDLG-TEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTY 297 (329)
T ss_pred HhccCCEEEEeccC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 35578999999998 2233344433333333322 222345666667666665544
No 209
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.21 E-value=0.25 Score=62.21 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=28.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHH
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELF 366 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~ 366 (1417)
+...+++++||||+| .+...-...+++.+...++...+|+ +|-+.+.+
T Consensus 124 P~~~~~KVvIIDEa~--~Ls~~a~naLLk~LEepp~~~vfI~--aTte~~kI 171 (507)
T PRK06645 124 PLQGKHKIFIIDEVH--MLSKGAFNALLKTLEEPPPHIIFIF--ATTEVQKI 171 (507)
T ss_pred cccCCcEEEEEEChh--hcCHHHHHHHHHHHhhcCCCEEEEE--EeCChHHh
Confidence 556789999999999 4444555566666654434433333 34344433
No 210
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.13 E-value=0.17 Score=66.60 Aligned_cols=44 Identities=25% Similarity=0.414 Sum_probs=31.8
Q ss_pred CCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHH
Q psy3476 318 SSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIEL 365 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~ 365 (1417)
..++++|||||| .+..+....++|.+..-+..+++|+. |-+...
T Consensus 118 gk~KViIIDEAh--~LT~eAqNALLKtLEEPP~~vrFILa--TTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVH--MLSRSSFNALLKTLEEPPEHVKFLLA--TTDPQK 161 (944)
T ss_pred CCcEEEEEechH--hcCHHHHHHHHHHHhccCCCeEEEEE--CCCchh
Confidence 468899999999 55667778888888776666666664 544333
No 211
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.06 E-value=0.35 Score=65.17 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=43.4
Q ss_pred cCCCcHHHHHHHHHHHhc-CCeEEEEcCCCcchhHHHHHH--HHHcCCCcEEEecchHHHHHHH
Q psy3476 36 NSLPVAQYKQEIIDTVLK-ERVVIIAGDTGCGKSTQIPQY--LVQAGFQRIACTQPRRIACISL 96 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~-~~~~iI~a~TGsGKTt~ipq~--ile~~~~~i~~tqPrr~aa~~~ 96 (1417)
..+.+..-|.+++..+.. +++++|+|..|+||||.+-.. +++..-.+|+.+.|+-.||..+
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENL 406 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHH
Confidence 456778889999988776 568999999999999964321 2333334677777876665444
No 212
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=94.00 E-value=0.77 Score=61.21 Aligned_cols=46 Identities=17% Similarity=0.084 Sum_probs=33.6
Q ss_pred CceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 480 LRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 480 ~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
.++.|++-+.+..|-|-|++-++.- .... -|.-+..|-+||.-|..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~--------l~~~----------~s~~~~~q~~gr~lr~~ 546 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAK--------LRSS----------GSETSKLQEVGRGLRLP 546 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEE--------eccC----------CchHHHHHHhccceecc
Confidence 6899999999999999998766553 2211 13345569999998864
No 213
>PRK02362 ski2-like helicase; Provisional
Probab=93.82 E-value=0.023 Score=75.06 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=81.2
Q ss_pred hhhhhHHHhhhccccccCC---CcccccccHH-----HHhhhhcCCccchhh------cchHHHHHHHHHhcCC----Cc
Q psy3476 794 IEEEEEEEEGERLESRTGP---GVCYRLYSEE-----QYSLLAEYSTPEIRR------VSIDSLLLSLVCMGLG----DV 855 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~p---G~CyRLyt~~-----~~~~l~~~~~PEI~r------~~L~~~vL~lk~~g~~----~~ 855 (1417)
..+.++-.||.|||||-+- |.||=++... .|+.+-.. .||=.. ..|...+|...+.|.- ++
T Consensus 366 ~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~-~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~ 444 (737)
T PRK02362 366 PIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWA-DPEDVRSKLATEPALRTHVLSTIASGFARTRDGL 444 (737)
T ss_pred eCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhC-CCCceeecCCChhhHHHHHHHHHHhCccCCHHHH
Confidence 3678889999999999763 8999888653 13333321 222121 2355666776666632 22
Q ss_pred ccC---CCCCCCCc------cchHHHHHHHhhccccccccc---cchhhhhcccCCCCccccchhhhccc
Q psy3476 856 RKF---PFLEAPPA------ENIESSVRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVFGSM 913 (1417)
Q Consensus 856 ~~f---~~l~~P~~------~~l~~A~~~L~~lgald~~~~---lT~lG~~l~~lPvdp~lak~Ll~~~~ 913 (1417)
..| .|+-.+.. +.+..+++.|...|+|+.++. .|++|+.++.++++|.-+..+..+..
T Consensus 445 ~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 445 LEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLE 514 (737)
T ss_pred HHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhh
Confidence 222 44444433 348899999999999987654 79999999999999999998876643
No 214
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.72 E-value=4.1 Score=59.42 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=44.1
Q ss_pred CCCcHHHHHHHHHHHhcC--CeEEEEcCCCcchhHHHHHH--HHHcCCCcEEEecchHHHHHHHHH
Q psy3476 37 SLPVAQYKQEIIDTVLKE--RVVIIAGDTGCGKSTQIPQY--LVQAGFQRIACTQPRRIACISLSK 98 (1417)
Q Consensus 37 ~lp~~~~q~~il~~i~~~--~~~iI~a~TGsGKTt~ipq~--ile~~~~~i~~tqPrr~aa~~~a~ 98 (1417)
.+++..-|.+.+..+..+ ++.+|.|+.|+||||.+-.. +++..-.+|.+..|+.-||..+++
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e 492 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQ 492 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 456777888888887664 79999999999999864332 334333467777788766655543
No 215
>KOG2340|consensus
Probab=93.68 E-value=1.9 Score=53.05 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=80.1
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhh--ccCCcCCeEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAE--TSITIDGIRFV 502 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae--~GIdIP~V~~V 502 (1417)
...+||+.|+.=+-.++-..+++ ..+....+|--.+...-.+.-+.|-.|..+|++-|.-+- +--+|.+|+-|
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~-----e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~v 626 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKK-----EEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNV 626 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhh-----hhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeE
Confidence 45799999999998888888765 233333333333333333444557788899999996543 56788999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-----CCeEEEecCHHHHHHhh
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-----PGVCYRLYSEEQYSLLA 560 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-----~G~cy~L~t~~~~~~l~ 560 (1417)
|- |.+|+...-|. +...+.+|+.-.| .-.|-.||++-+--.+.
T Consensus 627 Vf--------YqpP~~P~FYs-------Eiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le 674 (698)
T KOG2340|consen 627 VF--------YQPPNNPHFYS-------EIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLE 674 (698)
T ss_pred EE--------ecCCCCcHHHH-------HHHhhhhhhhccCCccccceEEEEEeechhhHHHH
Confidence 98 99998766553 6668888774443 24688899987765544
No 216
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.60 E-value=0.31 Score=58.80 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=31.9
Q ss_pred CCccEEEEecCccccc-CcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 318 SSYDVLVLDEIHERHL-HGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l-~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
.++++|+||=+= |+. +.+.+..+.+......++.-++.+|||....++.+.+
T Consensus 284 ~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 284 NCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred CCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 468999999986 433 3333333333333344556677889988766665554
No 217
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.60 E-value=0.071 Score=54.01 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=34.5
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHHc--------CCCcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQA--------GFQRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile~--------~~~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
++++.++|.|++|||||+.+-+++.+. ...-+.+..|.......++..++.+++.
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 64 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGL 64 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCc
Confidence 456789999999999999988877654 3334666666655556667777776643
No 218
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=93.60 E-value=0.79 Score=53.04 Aligned_cols=100 Identities=17% Similarity=0.087 Sum_probs=51.8
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHH--HHHcCCCcEEEecchHHHHHHHHHHHHHHHc---cccCC
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQY--LVQAGFQRIACTQPRRIACISLSKRVAYETL---SQYSN 110 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~--ile~~~~~i~~tqPrr~aa~~~a~rva~e~~---~~~g~ 110 (1417)
+.+-...+--+++..+.-++--|+...||-|||..+... +....-..+-|.-... -+|+|=+++++ ..+|-
T Consensus 72 r~~g~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~Nd----yLA~RD~~~~~~~y~~LGl 147 (266)
T PF07517_consen 72 RTLGLRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSND----YLAKRDAEEMRPFYEFLGL 147 (266)
T ss_dssp HHTS----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSH----HHHHHHHHHHHHHHHHTT-
T ss_pred HHcCCcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccH----HHhhccHHHHHHHHHHhhh
Confidence 445555555666655544444499999999999764433 3222222332222222 23444444443 46789
Q ss_pred eEEEEEeecccc----cCCccEEEEccchhHHh
Q psy3476 111 LVGYQIRFEKHR----REKTKIVFITEGLLLRQ 139 (1417)
Q Consensus 111 ~vGy~ir~e~~~----~~~t~I~~~T~g~llr~ 139 (1417)
+||+........ .-...|+|+|.+-+---
T Consensus 148 sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD 180 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYAADIVYGTNSEFGFD 180 (266)
T ss_dssp -EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHH
T ss_pred ccccCccccCHHHHHHHHhCcccccccchhhHH
Confidence 999866543211 12457999999876643
No 219
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.55 E-value=0.24 Score=63.87 Aligned_cols=42 Identities=29% Similarity=0.448 Sum_probs=29.6
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+.+.+++++||||+| .+.......+++.+...+...++|+.+
T Consensus 115 P~~gk~KVIIIDEad--~Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 115 PTAGKYKVYIIDEVH--MLSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhCCcEEEEEECcc--ccCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 345678999999999 455555667777777666667666654
No 220
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.54 E-value=0.38 Score=63.94 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=30.6
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
....++++||||+| .+..+-...++|.+......+.+|+.+
T Consensus 117 ~~~~~KV~IIDEad--~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 117 AESRYKIFIIDEAH--MVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred hcCCceEEEEechh--hcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 34678999999999 455666777888887766677777654
No 221
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.37 E-value=0.16 Score=63.45 Aligned_cols=42 Identities=29% Similarity=0.479 Sum_probs=30.0
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...+++++||||+| .+..+-...+++.+..-++...+|+.+
T Consensus 112 P~~~~~KVvIIDEah--~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 112 PISSKFKVYIIDEVH--MLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cccCCceEEEEeChH--hCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 556789999999999 555555667777776656666666543
No 222
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.27 E-value=0.16 Score=65.45 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=28.9
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
-..++++||||+| .+..+-...++|.+..-++..++|+.
T Consensus 117 ~g~~KV~IIDEah--~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 117 RGRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred cCCCEEEEEechH--hCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 3578999999999 55666677888877765566666664
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.12 E-value=0.55 Score=53.72 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=34.0
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccCCCHHHHHHHhc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSATINIELFHTYFN 371 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSATln~~~~~~~f~ 371 (1417)
+.+++++||||++... .+++...++..+...| .+.+-++++.-++.+.+.+.++
T Consensus 160 l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g 214 (244)
T PRK07952 160 LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLG 214 (244)
T ss_pred hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhC
Confidence 5578999999999332 4556655655554443 2234455555667777777663
No 224
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.03 E-value=0.45 Score=59.65 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=30.3
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~ 369 (1417)
+.++++||||.+- ++.....+...+..+........+++++++....++.+.
T Consensus 426 l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ei 477 (559)
T PRK12727 426 LRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEV 477 (559)
T ss_pred hccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHH
Confidence 4568999999996 433222222223333333345678889999865544443
No 225
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.98 E-value=0.29 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=15.9
Q ss_pred HHHHhcCCeEEEEcCCCcchhH
Q psy3476 48 IDTVLKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 48 l~~i~~~~~~iI~a~TGsGKTt 69 (1417)
.+.+.+++++++.|+||+|||.
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKTh 62 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTH 62 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHH
T ss_pred CCCcccCeEEEEEhhHhHHHHH
Confidence 4455678899999999999996
No 226
>PRK06893 DNA replication initiation factor; Validated
Probab=92.97 E-value=0.27 Score=55.61 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=27.0
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCC-CCcEEEEccCCCHHHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-EVKIILMSATINIELF 366 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~-~~qvIlmSATln~~~~ 366 (1417)
+.+++++||||+|....+.+....+...+..... ..+++++|++..+..+
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l 139 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHAL 139 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHc
Confidence 4467899999999322222222233333332222 3456788888755443
No 227
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.90 E-value=0.2 Score=62.22 Aligned_cols=41 Identities=29% Similarity=0.510 Sum_probs=27.7
Q ss_pred CCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC
Q psy3476 318 SSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN 362 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln 362 (1417)
..+.++|||||| .+..+....+++.+..-+. +++++-||-+
T Consensus 120 g~~KV~IIDEah--~Ls~~A~NALLKtLEEPp~--~viFILaTte 160 (484)
T PRK14956 120 GKYKVYIIDEVH--MLTDQSFNALLKTLEEPPA--HIVFILATTE 160 (484)
T ss_pred CCCEEEEEechh--hcCHHHHHHHHHHhhcCCC--ceEEEeecCC
Confidence 468899999999 5666777788887755333 4444445543
No 228
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.87 E-value=0.43 Score=59.72 Aligned_cols=48 Identities=25% Similarity=0.457 Sum_probs=26.6
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHH
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELF 366 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~ 366 (1417)
+...++.+|||||+| .+..+....+++.+...++. +++.-||-+...+
T Consensus 113 p~~~~~kVvIIDE~h--~Lt~~a~~~LLk~LE~p~~~--vv~Ilattn~~kl 160 (472)
T PRK14962 113 PMEGKYKVYIIDEVH--MLTKEAFNALLKTLEEPPSH--VVFVLATTNLEKV 160 (472)
T ss_pred hhcCCeEEEEEEChH--HhHHHHHHHHHHHHHhCCCc--EEEEEEeCChHhh
Confidence 445678899999999 33344444555555443333 3333334354444
No 229
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=92.81 E-value=6.8 Score=48.52 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=57.7
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc------hhhccCCcCC
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN------IAETSITIDG 498 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn------Iae~GIdIP~ 498 (1417)
+|++|+-.||+--+.+-++.+.+... .+.-.+..|.|..++++|..... +.+|+|||+ +.+-=+|+.+
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~-ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~d 131 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTG-IPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDD 131 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhC-CChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCccChHH
Confidence 55788889999988888888876432 24457899999999999998886 358999995 4444588999
Q ss_pred eEEEE
Q psy3476 499 IRFVV 503 (1417)
Q Consensus 499 V~~VI 503 (1417)
+.++|
T Consensus 132 v~~li 136 (542)
T COG1111 132 VSLLI 136 (542)
T ss_pred ceEEE
Confidence 98887
No 230
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.79 E-value=0.73 Score=60.29 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=32.3
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHh-ccCCCCcEEEEccCCCHHHHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLL-HSTAEVKIILMSATINIELFH 367 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~-~~r~~~qvIlmSATln~~~~~ 367 (1417)
+.++++|+||=+= |+....-+...+..+. ...+.-.++++|||...+.+.
T Consensus 261 ~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 261 LGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred hcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 4567899999997 5554433444444443 345666788899998655444
No 231
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.73 E-value=0.38 Score=61.63 Aligned_cols=40 Identities=23% Similarity=0.427 Sum_probs=27.9
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
..+++++||||+| .+.......+++.+...++...+|+.+
T Consensus 116 ~gk~KV~IIDEVh--~LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 116 QGRFKVYLIDEVH--MLSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred cCCcEEEEEechH--hcCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 3568999999999 555555667777776655566666543
No 232
>KOG0389|consensus
Probab=92.71 E-value=0.55 Score=60.00 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=86.2
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCC--ceEEEecchhhccCCcCCeEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL--RKCIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~--rkVLVATnIae~GIdIP~V~~ 501 (1417)
.+.+||+|----.-.+-+-..|.. .++....|.|.....+|+.+++.|...+ .-+|++|-...-|||+-+.++
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~-----l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~ 850 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDT-----LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANT 850 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHh-----cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccce
Confidence 457899996544333333333433 6788999999999999999999998654 457899999999999999999
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
||- ||...+. -.--+|.-|+-|.|-+.|=.+|+|+++...+
T Consensus 851 VIi--------hD~dFNP-------~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 851 VII--------HDIDFNP-------YDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred EEE--------eecCCCC-------cccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 986 6654432 2234566777777777799999999988765
No 233
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.66 E-value=1 Score=50.61 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=15.5
Q ss_pred cCCeEEEEcCCCcchhHH
Q psy3476 53 KERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ 70 (1417)
.+..+++.|++|||||+.
T Consensus 41 ~~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 456899999999999973
No 234
>PRK08116 hypothetical protein; Validated
Probab=92.54 E-value=0.63 Score=54.04 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=13.4
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
..+++.|++|+|||.
T Consensus 115 ~gl~l~G~~GtGKTh 129 (268)
T PRK08116 115 VGLLLWGSVGTGKTY 129 (268)
T ss_pred ceEEEECCCCCCHHH
Confidence 458999999999996
No 235
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.47 E-value=0.15 Score=58.91 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=23.6
Q ss_pred HHHHHhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+...++.+.+++|+|+|||||||++-.++..
T Consensus 120 l~~~v~~~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 120 LRSAVRGRGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp HHHCHHTTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HhhccccceEEEEECCCccccchHHHHHhhh
Confidence 3344567899999999999999987555443
No 236
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.47 E-value=0.55 Score=58.58 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=13.3
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
..++|.||+|+|||+
T Consensus 149 ~~l~l~G~~G~GKTh 163 (450)
T PRK00149 149 NPLFIYGGVGLGKTH 163 (450)
T ss_pred CeEEEECCCCCCHHH
Confidence 458999999999996
No 237
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.33 E-value=0.44 Score=61.00 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=30.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+....++++||||+| .+..+-...+++.+..-++...+|+.+
T Consensus 114 P~~~~~KVvIIDEah--~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 114 PAQSRYRIFIVDEAH--MVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred hhcCCceEEEEECCC--cCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 445689999999999 556666777788877666666666644
No 238
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.32 E-value=0.28 Score=62.65 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=29.5
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
..+++++||||+| .++..-...++|.+..-+.+.++|+.|
T Consensus 122 ~gr~KViIIDEah--~Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVH--MLTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChH--hcCHHHHHHHHHhhccCCCCceEEEEe
Confidence 4578999999999 455566678888776656667666654
No 239
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.27 E-value=0.5 Score=59.98 Aligned_cols=42 Identities=29% Similarity=0.403 Sum_probs=29.0
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...+++++||||+| .+..+....+++.+..-+....+|+.+
T Consensus 115 p~~g~~kViIIDEa~--~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 115 PSQGRYKVYLIDEVH--MLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred hhcCCcEEEEEechh--hccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 345678999999999 345556667777776655566666644
No 240
>PRK08727 hypothetical protein; Validated
Probab=92.22 E-value=0.72 Score=52.37 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=14.3
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
...+++.|++|||||+.
T Consensus 41 ~~~l~l~G~~G~GKThL 57 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHL 57 (233)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 34689999999999963
No 241
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.14 E-value=0.28 Score=57.90 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc----CCCcEEEecch
Q psy3476 44 KQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA----GFQRIACTQPR 89 (1417)
Q Consensus 44 q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~----~~~~i~~tqPr 89 (1417)
.+.+..+++.+.+++|+|+|||||||.+-..+-.- ...+|++..-.
T Consensus 122 ~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~ 171 (299)
T TIGR02782 122 RDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDT 171 (299)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCc
Confidence 34455677888999999999999999754433221 13466665544
No 242
>PRK05642 DNA replication initiation factor; Validated
Probab=92.02 E-value=0.34 Score=55.04 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=27.1
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIE 364 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~ 364 (1417)
+.+++++|||++|.-.........+...+...+..-+.+++++|..+.
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 445688999999922222233334444444444444667888877544
No 243
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.02 E-value=1.5 Score=57.00 Aligned_cols=35 Identities=23% Similarity=0.516 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcC---CeEEEEcCCCcchhHHHHHHH
Q psy3476 41 AQYKQEIIDTVLKE---RVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 41 ~~~q~~il~~i~~~---~~~iI~a~TGsGKTt~ipq~i 75 (1417)
+..+..+++.+..+ +.++|++|-|+||||.+.||.
T Consensus 21 ~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~ 58 (894)
T COG2909 21 YVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWR 58 (894)
T ss_pred ccccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHH
Confidence 44566777777654 799999999999999888775
No 244
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=91.99 E-value=1.1 Score=60.82 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=42.8
Q ss_pred cCCCcHHHHHHHHHHHh-cCCeEEEEcCCCcchhHHHHHH--HHHcCCCcEEEecchHHHHHHH
Q psy3476 36 NSLPVAQYKQEIIDTVL-KERVVIIAGDTGCGKSTQIPQY--LVQAGFQRIACTQPRRIACISL 96 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~-~~~~~iI~a~TGsGKTt~ipq~--ile~~~~~i~~tqPrr~aa~~~ 96 (1417)
....+..-|.+++..+. .+++++|+|+-|+||||.+-.. +++....+|+...|+--||..+
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHH
Confidence 34667888999998774 5789999999999999965432 2333334666667776555444
No 245
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.83 E-value=1.4 Score=54.86 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=13.0
Q ss_pred eEEEEcCCCcchhH
Q psy3476 56 VVIIAGDTGCGKST 69 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt 69 (1417)
.++|.||+|+|||+
T Consensus 132 ~l~lyG~~G~GKTH 145 (440)
T PRK14088 132 PLFIYGGVGLGKTH 145 (440)
T ss_pred eEEEEcCCCCcHHH
Confidence 58999999999996
No 246
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.78 E-value=0.55 Score=56.92 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=27.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...+++++||||+| .+..+....+++.+...++..++|+.+
T Consensus 115 p~~~~~kviIIDEa~--~l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 115 PSKSRFKVYLIDEVH--MLSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cccCCceEEEEEChh--hcCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 344578899999999 344444556677666555566666543
No 247
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.78 E-value=1.6 Score=51.78 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccCCCHHHHHHHh
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSATln~~~~~~~f 370 (1417)
+.+++++||||+.--.........++..+...| ...+-.++|.-++.+.+.+.|
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 567899999999832222222224444443322 233445556567778887777
No 248
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.70 E-value=1.1 Score=55.00 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=32.0
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccCCCHHHHHHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSATINIELFHTY 369 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSATln~~~~~~~ 369 (1417)
+.++++++||.+= |.-....+..-++.+.... +.-.++++|||...+.+.+.
T Consensus 267 l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 267 LRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred hcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 5678899999974 5544333444455554433 34456779999965555443
No 249
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.62 E-value=0.51 Score=59.66 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=29.1
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
-.+++++||||+| ++..+....+++.+..-++...+|+.+
T Consensus 117 ~~~~kV~iIDE~~--~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 117 KGRFKVYLIDEVH--MLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred cCCcEEEEEEChH--hcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 3478999999999 555666677888777666666666643
No 250
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.61 E-value=0.31 Score=57.91 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=22.4
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+..++..+.+++|+|+|||||||.+-
T Consensus 136 ~L~~~v~~~~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 136 VIRSAIDSRLNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHcCCeEEEECCCCCCHHHHHH
Confidence 355677788899999999999999753
No 251
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.61 E-value=0.18 Score=45.22 Aligned_cols=18 Identities=44% Similarity=0.713 Sum_probs=15.9
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+++++|.|++||||||.+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 458999999999999974
No 252
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.59 E-value=0.25 Score=61.00 Aligned_cols=41 Identities=22% Similarity=0.433 Sum_probs=28.0
Q ss_pred CCcHHHHHHHHHHHh--cCCeEEEEcCCCcchhHHHHHHHHHc
Q psy3476 38 LPVAQYKQEIIDTVL--KERVVIIAGDTGCGKSTQIPQYLVQA 78 (1417)
Q Consensus 38 lp~~~~q~~il~~i~--~~~~~iI~a~TGsGKTt~ipq~ile~ 78 (1417)
|.....+.+.+..+. .+..++++|||||||||..-.++-+.
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 444555555554443 35688999999999999776665543
No 253
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.37 E-value=0.44 Score=57.41 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=30.1
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
.-..+.++|||||| .++..-...+++.+..-+....+|++|
T Consensus 138 ~~g~~rVviIDeAd--~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 138 GDGNWRIVIIDPAD--DMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred ccCCceEEEEEchh--hcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 34578899999999 455666778888887755566666665
No 254
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.24 E-value=0.6 Score=60.07 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=28.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+....++++||||+| .+..+-...+++.+..-+....+|+.+
T Consensus 120 p~~g~~KV~IIDEvh--~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 120 PVQGRFKVFMIDEVH--MLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cccCCceEEEEEChh--hCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 334578999999999 455555667777766655556666544
No 255
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.22 E-value=0.97 Score=57.51 Aligned_cols=42 Identities=26% Similarity=0.416 Sum_probs=29.5
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...+++++||||+| .+...-...+++.+...+....+|+.+
T Consensus 115 p~~~~~kVvIIDEad--~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 115 PTRGRFKVYIIDEVH--MLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cccCCceEEEEcCcc--cCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 445678999999999 444455667778777766666666654
No 256
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.20 E-value=0.91 Score=58.43 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=30.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+.+..+++|||||+| .+...-...+++.+..-++...+|+.+
T Consensus 128 P~~a~~KVvIIDEad--~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 128 PVSARYKVYIIDEVH--MLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred hhcCCcEEEEEEChH--hCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 556789999999999 445555667777776666677777654
No 257
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.15 E-value=0.37 Score=57.30 Aligned_cols=27 Identities=37% Similarity=0.624 Sum_probs=22.2
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
-+..+++.+.+++|+|+|||||||.+-
T Consensus 140 ~L~~~v~~~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 140 AIIAAVRAHRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHcCCeEEEECCCCCCHHHHHH
Confidence 344567889999999999999998653
No 258
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=91.11 E-value=0.95 Score=55.66 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=13.2
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
..++|.|++|+|||+
T Consensus 137 n~l~l~G~~G~GKTh 151 (405)
T TIGR00362 137 NPLFIYGGVGLGKTH 151 (405)
T ss_pred CeEEEECCCCCcHHH
Confidence 357899999999996
No 259
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.10 E-value=0.28 Score=48.89 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHHc
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYLVQA 78 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~ile~ 78 (1417)
+..++|.||+||||||.+-..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 5688999999999998665554443
No 260
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=0.73 Score=58.82 Aligned_cols=34 Identities=21% Similarity=0.488 Sum_probs=27.4
Q ss_pred cCCCcHHHHHHHHHHHh--------cCCeEEEEcCCCcchhH
Q psy3476 36 NSLPVAQYKQEIIDTVL--------KERVVIIAGDTGCGKST 69 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~--------~~~~~iI~a~TGsGKTt 69 (1417)
..--+-..++.|++.+. ++..++++||+|.|||.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTS 365 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTS 365 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchh
Confidence 33456678899998774 66799999999999994
No 261
>PRK06921 hypothetical protein; Provisional
Probab=91.06 E-value=1.2 Score=51.69 Aligned_cols=17 Identities=24% Similarity=0.636 Sum_probs=15.2
Q ss_pred cCCeEEEEcCCCcchhH
Q psy3476 53 KERVVIIAGDTGCGKST 69 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt 69 (1417)
.+..+++.|+||+|||+
T Consensus 116 ~~~~l~l~G~~G~GKTh 132 (266)
T PRK06921 116 RKNSIALLGQPGSGKTH 132 (266)
T ss_pred CCCeEEEECCCCCcHHH
Confidence 46789999999999996
No 262
>PRK12377 putative replication protein; Provisional
Probab=90.97 E-value=1.3 Score=51.00 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=14.4
Q ss_pred CCeEEEEcCCCcchhH
Q psy3476 54 ERVVIIAGDTGCGKST 69 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt 69 (1417)
...+++.|++|+|||+
T Consensus 101 ~~~l~l~G~~GtGKTh 116 (248)
T PRK12377 101 CTNFVFSGKPGTGKNH 116 (248)
T ss_pred CCeEEEECCCCCCHHH
Confidence 4688999999999996
No 263
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.89 E-value=0.39 Score=57.48 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=21.6
Q ss_pred HHHHHhcCCeEEEEcCCCcchhHHHH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
+..+++.+.+++|+|+|||||||.+-
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHH
Confidence 34466789999999999999999763
No 264
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.74 E-value=0.32 Score=53.19 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=21.7
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
-+...+..+.+++|+|||||||||.+
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 34456778999999999999999965
No 265
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.62 E-value=1.3 Score=53.82 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=32.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCC
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 361 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATl 361 (1417)
+.-..+.++||||+| .++......++|.+..-++...+|++|...
T Consensus 137 ~~~~~~kVviIDead--~m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 137 AAEGGWRVVIVDTAD--EMNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cccCCCEEEEEechH--hcCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 344678899999999 456667778888887655666666665543
No 266
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.61 E-value=0.29 Score=58.72 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=22.6
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~ipq 73 (1417)
-+-.+++.+.+++|+|+|||||||.+-.
T Consensus 154 ~l~~~v~~~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 154 FLHACVVGRLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHcCCeEEEECCCCccHHHHHHH
Confidence 3445677899999999999999997643
No 267
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=90.59 E-value=0.14 Score=55.46 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=25.3
Q ss_pred EEEcCCCcchhHHHHHHHHH---cCCCcEEEecchHHHHHHHHHHHHH
Q psy3476 58 IIAGDTGCGKSTQIPQYLVQ---AGFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 58 iI~a~TGsGKTt~ipq~ile---~~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
||+|+-|.|||+.+-..+.. .+..+|+||.|+..++.++.+.+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~ 48 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEK 48 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHh
Confidence 68999999999976655433 3335899999999888777665443
No 268
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=90.53 E-value=1.8 Score=56.00 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=53.5
Q ss_pred HHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCC----CCceEEEec
Q psy3476 412 ILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE----GLRKCIVST 487 (1417)
Q Consensus 412 il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~----G~rkVLVAT 487 (1417)
+.+.+.+.+. ..+|.+||-+++...++.+++.+.... .+. +...|..+ .+...++.|++ |...||++|
T Consensus 458 ~~~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l----~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 458 VSLSTAAILR-KAQGGTLVLTTAFSHISAIGQLVELGI----PAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred HHHHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhc----CCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeC
Confidence 4444444443 347899999999999999999986522 222 33455443 23445555554 578999999
Q ss_pred chhhccCCc
Q psy3476 488 NIAETSITI 496 (1417)
Q Consensus 488 nIae~GIdI 496 (1417)
+.+-.|||+
T Consensus 530 ~sfweGvDv 538 (636)
T TIGR03117 530 GGAWTGIDL 538 (636)
T ss_pred Ccccccccc
Confidence 999999999
No 269
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=90.34 E-value=1.1 Score=55.98 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.6
Q ss_pred CeEEEEcCCCcchhHH
Q psy3476 55 RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ 70 (1417)
..++|.|++|+|||+.
T Consensus 142 npl~i~G~~G~GKTHL 157 (450)
T PRK14087 142 NPLFIYGESGMGKTHL 157 (450)
T ss_pred CceEEECCCCCcHHHH
Confidence 3588999999999963
No 270
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=90.19 E-value=0.63 Score=62.52 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=87.6
Q ss_pred cEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC--CceEEEecchhhccCCcCCeEEEEc
Q psy3476 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG--LRKCIVSTNIAETSITIDGIRFVVD 504 (1417)
Q Consensus 427 ~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G--~rkVLVATnIae~GIdIP~V~~VId 504 (1417)
++|||..-..-..-+...+.. .++....++|+++.++|...++.|.++ ..-++++|-....|+|.-+...||.
T Consensus 713 kvlifsq~t~~l~il~~~l~~-----~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~ 787 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKA-----LGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL 787 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHh-----cCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE
Confidence 799999999988888888876 346799999999999999999999985 5667888889999999999999998
Q ss_pred CCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 505 SGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 505 sG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
||+.-+.... .++..|+-|.|+..+=.+|++.++...+
T Consensus 788 --------~d~~wnp~~~-------~Qa~dRa~RigQ~~~v~v~r~i~~~tiE 825 (866)
T COG0553 788 --------FDPWWNPAVE-------LQAIDRAHRIGQKRPVKVYRLITRGTIE 825 (866)
T ss_pred --------eccccChHHH-------HHHHHHHHHhcCcceeEEEEeecCCcHH
Confidence 7775443322 2444455555555577889999887644
No 271
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=90.19 E-value=0.54 Score=55.35 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=35.5
Q ss_pred CCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHh----hhhhhHHHHHHHHhhhhhhhh
Q psy3476 124 EKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERA----LRHGEIKLLQAIKRKKAEEAP 181 (1417)
Q Consensus 124 ~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 181 (1417)
.+..|+++-+|..++.+..+...+|.+ +-..|++. ...|.-.|.+.|+..|-+.+.
T Consensus 92 gk~PilvGGTglYi~all~gl~~~p~~--~~~~r~~~~~~~~~~g~~~l~~~L~~~DP~~A~ 151 (300)
T PRK14729 92 KKIPIFVGGSAFYFKHLKYGLPSTPPV--SSKIRIYVNNLFTLKGKSYLLEELKRVDFIRYE 151 (300)
T ss_pred CCCEEEEeCchHHHHHHHcCCCCCCCC--CHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHh
Confidence 345689999999999998875444433 33334442 345666677777766654433
No 272
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.07 E-value=1 Score=57.63 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=12.8
Q ss_pred eEEEEcCCCcchhH
Q psy3476 56 VVIIAGDTGCGKST 69 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt 69 (1417)
.++|.|++|||||.
T Consensus 316 pL~LyG~sGsGKTH 329 (617)
T PRK14086 316 PLFIYGESGLGKTH 329 (617)
T ss_pred cEEEECCCCCCHHH
Confidence 48999999999996
No 273
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.05 E-value=0.23 Score=57.44 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCcchhHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
....++|.|||||||||.+...|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamI 146 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMI 146 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHH
Confidence 45689999999999998765444
No 274
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.99 E-value=0.85 Score=55.98 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=24.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
+.+.++.++||||+| .+...-...+++.+...++...+|+
T Consensus 123 p~~~~~kvvIIdea~--~l~~~~~~~LLk~LEep~~~t~~Il 162 (397)
T PRK14955 123 PQKGRYRVYIIDEVH--MLSIAAFNAFLKTLEEPPPHAIFIF 162 (397)
T ss_pred hhcCCeEEEEEeChh--hCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 567788999999999 3333334455555544334444444
No 275
>KOG0388|consensus
Probab=89.99 E-value=1 Score=56.68 Aligned_cols=115 Identities=20% Similarity=0.206 Sum_probs=88.0
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCC-ceEEEecchhhccCCcCCeEE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL-RKCIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~-rkVLVATnIae~GIdIP~V~~ 501 (1417)
.++..+|+|..--+-+.-+-+.|.. .++.-+.|.|.....+|..+...+.... .-.+++|-...-|||+.+.+.
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~y-----r~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADT 1116 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVY-----RGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADT 1116 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHh-----hccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccce
Confidence 4567899998777777777777755 6788999999999999999999887654 456889999999999999999
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
||- ||..-+.. -..++.-|+-|-|-+..-.+|+|.++...+
T Consensus 1117 ViF--------YdSDWNPT-------~D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1117 VIF--------YDSDWNPT-------ADQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred EEE--------ecCCCCcc-------hhhHHHHHHHhccCccceeeeeecccccHH
Confidence 996 77554322 223445555555555567899999987665
No 276
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=89.91 E-value=0.31 Score=64.43 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=20.3
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHh
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQE 447 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~ 447 (1417)
+++.|||||+....|..+.+.|..
T Consensus 294 ~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 294 GPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCCcEEEEEcchHHHHHHHHHHHh
Confidence 457899999999999998887744
No 277
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=89.76 E-value=0.5 Score=48.37 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC
Q psy3476 43 YKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG 79 (1417)
Q Consensus 43 ~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~ 79 (1417)
.-+.+.+.+..++++++.|+-|+||||.+-.++...+
T Consensus 4 la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 4 LAKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp HHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456778889999999999999999986554444333
No 278
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=89.61 E-value=0.25 Score=61.83 Aligned_cols=41 Identities=29% Similarity=0.440 Sum_probs=32.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
|.-.+|++.||||+| ++...-..+++|.+..-++.+.+|+.
T Consensus 115 P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~hV~FIlA 155 (515)
T COG2812 115 PSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSHVKFILA 155 (515)
T ss_pred CccccceEEEEecHH--hhhHHHHHHHhcccccCccCeEEEEe
Confidence 567789999999999 78888888999988776666655553
No 279
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.52 E-value=0.94 Score=58.42 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=26.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
+.+.++++|||||+| .+..+-...+++.+..-++...+|+.
T Consensus 116 p~~~~~kVvIIDEa~--~L~~~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 116 PALARYKVYIIDEVH--MLSTAAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred cccCCeEEEEEeChH--hCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 455678999999999 44455556666666554444444443
No 280
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.47 E-value=2.7 Score=48.94 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=32.3
Q ss_pred CCccEEEEecCccccc-CcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHH
Q psy3476 318 SSYDVLVLDEIHERHL-HGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l-~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~ 369 (1417)
.++++||||.+= |+. +.+.+..+.+.+....++..++.+|||...++..++
T Consensus 153 ~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 153 ARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred CCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 368999999996 443 344455555544444556567789999855444333
No 281
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.38 E-value=0.37 Score=58.26 Aligned_cols=25 Identities=52% Similarity=0.834 Sum_probs=20.1
Q ss_pred HHHHHh-cCCeEEEEcCCCcchhHHH
Q psy3476 47 IIDTVL-KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 47 il~~i~-~~~~~iI~a~TGsGKTt~i 71 (1417)
+.+.+. .+..++|+|||||||||.+
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHH
Confidence 445554 6789999999999999965
No 282
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=88.90 E-value=8.7 Score=49.66 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=38.4
Q ss_pred cCCeEEEEcCCCcchhHHHHHH---HHHcCCCcEEEecchHHHHHHHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQY---LVQAGFQRIACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~---ile~~~~~i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
+.+..++.+|=|+|||+.+-.+ +......+|++|.|+.-.+.++-+++..-+
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHH
Confidence 4567799999999999875433 222122589999999888888888776554
No 283
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.81 E-value=1.2 Score=57.33 Aligned_cols=42 Identities=26% Similarity=0.462 Sum_probs=29.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...+++++||||+| .+..+-...+++.+..-++...+|+.+
T Consensus 115 p~~~~~KVvIIdev~--~Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 115 PSRSRYKIFIIDEVH--MLSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cccCCceEEEEEChh--hCCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 455789999999999 455555667777776655566666543
No 284
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=88.54 E-value=2.5 Score=48.74 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=18.7
Q ss_pred HHHHHhcCCeEEEEcCCCcchhH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt 69 (1417)
..+.+..+.++++.|++|+|||.
T Consensus 98 ~~~~~~~~~nl~l~G~~G~GKTh 120 (254)
T COG1484 98 LVEFFERGENLVLLGPPGVGKTH 120 (254)
T ss_pred HHHHhccCCcEEEECCCCCcHHH
Confidence 33455578899999999999996
No 285
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=88.50 E-value=1.4 Score=55.73 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=31.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+....++++|||||| .+..+....+++.+..-++...+|+.+
T Consensus 113 P~~~~~KVvIIDEad--~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 113 PSMARFKIFIIDEVH--MLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cccCCeEEEEEECcc--cCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 456688999999999 455666777788777766666666654
No 286
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=88.45 E-value=0.8 Score=55.57 Aligned_cols=55 Identities=24% Similarity=0.400 Sum_probs=41.3
Q ss_pred HHHHHHHHHH------hcCCeEEEEcCCCcchhHHHHHHH--HHcCCCcEEEecchHHHHHHH
Q psy3476 42 QYKQEIIDTV------LKERVVIIAGDTGCGKSTQIPQYL--VQAGFQRIACTQPRRIACISL 96 (1417)
Q Consensus 42 ~~q~~il~~i------~~~~~~iI~a~TGsGKTt~ipq~i--le~~~~~i~~tqPrr~aa~~~ 96 (1417)
..|+++++.+ .++.++.|.|+-|+|||+.+-.++ +......++++.|+.+||..+
T Consensus 4 ~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhc
Confidence 4566666666 778899999999999998764443 233335799999999988765
No 287
>KOG0989|consensus
Probab=88.26 E-value=0.61 Score=54.17 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=30.8
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
....+++||+||+| ++..|-...+.+.+.......++|+..
T Consensus 126 ~~~~fKiiIlDEcd--smtsdaq~aLrr~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 126 PCPPFKIIILDECD--SMTSDAQAALRRTMEDFSRTTRFILIC 166 (346)
T ss_pred CCCcceEEEEechh--hhhHHHHHHHHHHHhccccceEEEEEc
Confidence 45668999999999 666777777777776666667777764
No 288
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=88.18 E-value=1.1 Score=55.66 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=13.3
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
..++|.||+|+|||+
T Consensus 142 npl~L~G~~G~GKTH 156 (445)
T PRK12422 142 NPIYLFGPEGSGKTH 156 (445)
T ss_pred ceEEEEcCCCCCHHH
Confidence 458999999999997
No 289
>PRK11054 helD DNA helicase IV; Provisional
Probab=88.16 E-value=2.2 Score=55.87 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=52.0
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHH---HHHHHcCC---CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP---QYLVQAGF---QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ip---q~ile~~~---~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
.+-|+...|.+++.. ....++|.|..|||||+.+. .+++..+. .+|+++..+|-||..+.+|+....+
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 456888888888753 44567899999999998754 45555442 4799999999999999999877653
No 290
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.14 E-value=2 Score=46.79 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=26.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
+......+|||||+| .+..+....+++.+...++...+|+.
T Consensus 92 ~~~~~~kviiide~~--~l~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 92 PQESGRRVVIIEDAE--RMNEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cccCCeEEEEEechh--hhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 445678999999999 34444555666666554444444444
No 291
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=88.10 E-value=1.7 Score=48.92 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=12.9
Q ss_pred eEEEEcCCCcchhH
Q psy3476 56 VVIIAGDTGCGKST 69 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt 69 (1417)
.+.|.||+|+|||.
T Consensus 36 ~l~l~G~~G~GKTH 49 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH 49 (219)
T ss_dssp EEEEEESTTSSHHH
T ss_pred ceEEECCCCCCHHH
Confidence 58999999999997
No 292
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=88.02 E-value=2.2 Score=55.52 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=36.3
Q ss_pred CeEEEEcCCCcchhHHHHHH---HHHcC-CCcEEEecchHHHHHHHHHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQY---LVQAG-FQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~---ile~~-~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
+.++|+|+=|=|||..+-.+ +...+ ..+|++|.|+..++.++.+...+
T Consensus 232 ~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~ 283 (758)
T COG1444 232 RALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGK 283 (758)
T ss_pred ceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHH
Confidence 38999999999999876533 33333 46999999999888777765433
No 293
>PRK00254 ski2-like helicase; Provisional
Probab=87.95 E-value=0.19 Score=66.26 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=51.2
Q ss_pred CcHHHHHHHHHH-HhcCCeEEEEcCCCcchhHHHHHHHHHc---CCCcEEEecchHHHHHHHHHHHHH
Q psy3476 39 PVAQYKQEIIDT-VLKERVVIIAGDTGCGKSTQIPQYLVQA---GFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 39 p~~~~q~~il~~-i~~~~~~iI~a~TGsGKTt~ipq~ile~---~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
-.+.+|.++++. +.+++++++++|||||||..+..++++. ...++++..|+|..+.+..+++..
T Consensus 23 ~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~ 90 (720)
T PRK00254 23 ELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKD 90 (720)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHH
Confidence 356789999975 8899999999999999999876666543 235788889999988888877653
No 294
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.90 E-value=0.62 Score=57.04 Aligned_cols=51 Identities=35% Similarity=0.428 Sum_probs=35.7
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHHc----CC-CcEEEecchHHHHHHHHHHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYLVQA----GF-QRIACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~ile~----~~-~~i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
+.+++++|||||||||++.++.... +. ..++-+-+-|.++....++.+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~l 278 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTM 278 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhc
Confidence 4578899999999999988776432 22 235566677888777666665543
No 295
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=87.88 E-value=0.4 Score=53.02 Aligned_cols=18 Identities=44% Similarity=0.804 Sum_probs=15.3
Q ss_pred CeEEEEcCCCcchhHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ip 72 (1417)
..++|+|||||||||.+-
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468999999999999653
No 296
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.86 E-value=1.5 Score=55.34 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=25.7
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
+...++.++||||+| .+..+....+++.+...++..-+|+
T Consensus 115 P~~~~~KVvIIDEad--~Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 115 PIKGKYKVYIIDEAH--MLTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred cccCCeeEEEEEChh--hcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 556788999999999 4444445566666655444444443
No 297
>PRK05973 replicative DNA helicase; Provisional
Probab=87.84 E-value=0.73 Score=52.46 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=38.7
Q ss_pred hhhhhhchHHHHHH-hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 21 QKEKFSTLMKIRET-QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 21 ~~~~~~~~~~~~~~-r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+.+.|..+.-+... ....| .+++..-+..+..++|.|++|+|||+...|++.+
T Consensus 34 ~~~g~~~w~~~~~~~~~~~p----~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~ 87 (237)
T PRK05973 34 AEEGFSSWSLLAAKAAATTP----AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVE 87 (237)
T ss_pred HHhccchHHHHHHhccCCCC----HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 56667777665533 23355 3456667788999999999999999987777765
No 298
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.84 E-value=0.65 Score=53.83 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=22.5
Q ss_pred HHHHHHHH-HHh-cCCeEEEEcCCCcchhHHHHHH
Q psy3476 42 QYKQEIID-TVL-KERVVIIAGDTGCGKSTQIPQY 74 (1417)
Q Consensus 42 ~~q~~il~-~i~-~~~~~iI~a~TGsGKTt~ipq~ 74 (1417)
..+.+.+. .+. .+..++|+|+|||||||.+-.+
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~al 100 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSA 100 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHH
Confidence 33444444 443 3568999999999999966443
No 299
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=87.77 E-value=2.2 Score=55.67 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=28.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+....++++|||||| .+..+....+++.+..-++...+|+.+
T Consensus 114 P~~g~~KV~IIDEa~--~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 114 PTQSKYKIYIIDEVH--MLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred hhcCCCEEEEEEChh--hCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 456789999999999 455556667777766544444444433
No 300
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=87.75 E-value=0.97 Score=52.25 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHH
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
...+.++..+..+..+++.||+|||||+.+
T Consensus 9 ~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 9 RVTSRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 445678888889999999999999999743
No 301
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=87.61 E-value=0.86 Score=53.31 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=31.5
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHH---Hc-C-C-CcEEEecchHHHHHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLV---QA-G-F-QRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~il---e~-~-~-~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
.+++++++||||+||||.+..... .. + . ..++-+-|-|.++.......+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~ 248 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAK 248 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHH
Confidence 345899999999999997655433 22 3 2 2355566667766554444443
No 302
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.55 E-value=2.3 Score=54.98 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=35.1
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEe
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKV 379 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v 379 (1417)
+.+.++++|||||+| .+...-...+++.+..-++...+|+.+ | +...+..-+...+.++..
T Consensus 123 P~~~~~KVvIIdEad--~Lt~~a~naLLK~LEePp~~tv~IL~t-~-~~~kLl~TI~SRc~~vef 183 (620)
T PRK14954 123 PQKGRYRVYIIDEVH--MLSTAAFNAFLKTLEEPPPHAIFIFAT-T-ELHKIPATIASRCQRFNF 183 (620)
T ss_pred hhcCCCEEEEEeChh--hcCHHHHHHHHHHHhCCCCCeEEEEEe-C-ChhhhhHHHHhhceEEec
Confidence 567789999999999 334444556666665544555555554 3 334443333334444443
No 303
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=87.54 E-value=3.1 Score=47.74 Aligned_cols=62 Identities=24% Similarity=0.278 Sum_probs=42.1
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCC
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPG 381 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~g 381 (1417)
...++-+++++||-= -.+|..-...+...+...+.+-+.|+|. |-|.....+|+ ..++.+..
T Consensus 153 AL~~~p~lllLDEP~-~gvD~~~~~~i~~lL~~l~~eg~tIl~v-tHDL~~v~~~~---D~vi~Ln~ 214 (254)
T COG1121 153 ALAQNPDLLLLDEPF-TGVDVAGQKEIYDLLKELRQEGKTVLMV-THDLGLVMAYF---DRVICLNR 214 (254)
T ss_pred HhccCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEE-eCCcHHhHhhC---CEEEEEcC
Confidence 456788999999986 5666665666666666666555666665 66878888888 34555443
No 304
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=87.49 E-value=1.6 Score=55.86 Aligned_cols=40 Identities=30% Similarity=0.425 Sum_probs=25.6
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
+....+.++||||+| .+..+-...+++.+..-+....+|+
T Consensus 115 p~~~~~kViIIDE~~--~Lt~~a~naLLKtLEepp~~~ifIl 154 (559)
T PRK05563 115 PSEAKYKVYIIDEVH--MLSTGAFNALLKTLEEPPAHVIFIL 154 (559)
T ss_pred cccCCeEEEEEECcc--cCCHHHHHHHHHHhcCCCCCeEEEE
Confidence 456689999999999 4455556667776654333333333
No 305
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.48 E-value=1 Score=59.43 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH----cC-CCcEEEecch
Q psy3476 43 YKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ----AG-FQRIACTQPR 89 (1417)
Q Consensus 43 ~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile----~~-~~~i~~tqPr 89 (1417)
+-+.+++++..+++.++.+|||+|||..+.-..+. .+ ..+|++...+
T Consensus 18 ~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRT 69 (705)
T TIGR00604 18 YMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRT 69 (705)
T ss_pred HHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEccc
Confidence 34456777789999999999999999765544443 22 2456555444
No 306
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=87.29 E-value=1.1 Score=58.83 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHH---HHHHH-cCC--CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP---QYLVQ-AGF--QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ip---q~ile-~~~--~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
...|.+++.. .+..++|.|..|||||+.+. .++++ .+. .+|+++--+|-||..+.+|+....+
T Consensus 4 n~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 4 NPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4557777764 34567888999999998754 34554 354 4799999999999999999987654
No 307
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=87.26 E-value=6 Score=46.46 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHHc---CCC-cEEEecchHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYLVQA---GFQ-RIACTQPRRI 91 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~ile~---~~~-~i~~tqPrr~ 91 (1417)
..-.+|-=.||.||--|+...|+++ |.. .|+++..--+
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL 103 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDL 103 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhh
Confidence 3455666679999999999999886 333 5888876544
No 308
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.16 E-value=2.4 Score=53.68 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=25.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
+.+.+..+|||||+| .+..+....+++.+...++...+|+.
T Consensus 112 p~~~~~kVVIIDEad--~ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 112 PLRGGRKVYILDEAH--MMSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred cccCCCeEEEEECcc--ccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 455678999999999 33444566666666554444444443
No 309
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=87.00 E-value=3 Score=49.73 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCcchhHHHHHH---HHHcCCCc-EEEecchHHHHHHHHHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQY---LVQAGFQR-IACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~---ile~~~~~-i~~tqPrr~aa~~~a~rva~e 103 (1417)
+.++.++||+|+||||.+... +...+..- ++-.-+.|.+|..-....+..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~ 167 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGER 167 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHH
Confidence 468899999999999975433 33333322 333445566655444444444
No 310
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=86.84 E-value=1.1 Score=53.02 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=31.1
Q ss_pred HHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC-CcEEEecchHH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF-QRIACTQPRRI 91 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~-~~i~~tqPrr~ 91 (1417)
+..++....+++|+|.|||||||.+=.....-.. .|++|.+-+..
T Consensus 166 L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaE 211 (355)
T COG4962 166 LRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAE 211 (355)
T ss_pred HHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhh
Confidence 3445556679999999999999976544433222 48888877643
No 311
>PRK10436 hypothetical protein; Provisional
Probab=86.76 E-value=0.74 Score=57.44 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=21.9
Q ss_pred HHHHHHHHH-H-hcCCeEEEEcCCCcchhHHHHH
Q psy3476 42 QYKQEIIDT-V-LKERVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 42 ~~q~~il~~-i-~~~~~~iI~a~TGsGKTt~ipq 73 (1417)
..+.+.+.. + ..+..++|+|||||||||.+-.
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 334444443 3 3567899999999999996543
No 312
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.68 E-value=2.5 Score=54.42 Aligned_cols=39 Identities=28% Similarity=0.490 Sum_probs=24.1
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
...++.+|||||+| .+..+....+++.+..-.+...+|+
T Consensus 116 ~~g~~kVIIIDEad--~Lt~~a~naLLk~LEEP~~~~ifIL 154 (624)
T PRK14959 116 MEGRYKVFIIDEAH--MLTREAFNALLKTLEEPPARVTFVL 154 (624)
T ss_pred hcCCceEEEEEChH--hCCHHHHHHHHHHhhccCCCEEEEE
Confidence 34578899999999 4445555666666654333333333
No 313
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=86.67 E-value=0.78 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=20.4
Q ss_pred HHHhcCCeEEEEcCCCcchhHHHH
Q psy3476 49 DTVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 49 ~~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
..++.+.+++|+|+|||||||.+-
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHH
Confidence 456688999999999999999653
No 314
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=86.65 E-value=1.4 Score=56.25 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=26.7
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...+++++||||+| .+..+-...+++.+..-++...+|+++
T Consensus 115 P~~~~~KVIIIDEad--~Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 115 PTTFKYKVYIIDEAH--MLSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred hhhCCcEEEEEechH--hCCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 345578999999999 344444556666665544555555544
No 315
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=86.61 E-value=2.6 Score=49.48 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=32.4
Q ss_pred CCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHh----hhhhhHHHHHHHHhhhh
Q psy3476 124 EKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERA----LRHGEIKLLQAIKRKKA 177 (1417)
Q Consensus 124 ~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 177 (1417)
.+..|+++-+|+.++.+..+....|.+ .-+.|++. ...|.-.|.+.|+..|-
T Consensus 88 g~~pi~vGGTg~Yi~all~g~~~~p~~--~~~~r~~l~~~~~~~g~~~l~~~L~~~DP 143 (287)
T TIGR00174 88 GKIPLLVGGTGLYLKALLEGLSPTPSA--DKLIREQLEILAEEQGWDFLYNELKKVDP 143 (287)
T ss_pred CCCEEEEcCcHHHHHHHHcCCCCCCCC--CHHHHHHHHHHHHHcCHHHHHHHHHhcCH
Confidence 356788999999999999875433322 33345443 33455556666665553
No 316
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=86.61 E-value=1.1 Score=52.06 Aligned_cols=51 Identities=27% Similarity=0.353 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCcchhHHHHHH---HHHcCCCc-EEEecchHHHHHHHHHHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQY---LVQAGFQR-IACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~---ile~~~~~-i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
.++++++|++|+||||.+... +.+.+..- ++.+-+-|.++..-.+.++..+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~ 126 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRL 126 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhC
Confidence 357888999999999975433 33444322 3344566776655444455543
No 317
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=86.55 E-value=5.8 Score=46.88 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=16.9
Q ss_pred HHHHHHhcCC---eEEEEcCCCcchhHH
Q psy3476 46 EIIDTVLKER---VVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 46 ~il~~i~~~~---~~iI~a~TGsGKTt~ 70 (1417)
.+...+.+++ .+++.||+|+|||+.
T Consensus 32 ~l~~~~~~~~~~~~lll~G~~G~GKT~l 59 (316)
T PHA02544 32 TFKSIVKKGRIPNMLLHSPSPGTGKTTV 59 (316)
T ss_pred HHHHHHhcCCCCeEEEeeCcCCCCHHHH
Confidence 4444444543 555599999999974
No 318
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=86.54 E-value=0.43 Score=47.71 Aligned_cols=14 Identities=64% Similarity=1.018 Sum_probs=12.9
Q ss_pred eEEEEcCCCcchhH
Q psy3476 56 VVIIAGDTGCGKST 69 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt 69 (1417)
+++|+|++||||||
T Consensus 1 vI~I~G~~gsGKST 14 (121)
T PF13207_consen 1 VIIISGPPGSGKST 14 (121)
T ss_dssp EEEEEESTTSSHHH
T ss_pred CEEEECCCCCCHHH
Confidence 57999999999997
No 319
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=86.50 E-value=2.6 Score=53.53 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=60.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc-----hhhcc-CCcCCeEE
Q psy3476 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN-----IAETS-ITIDGIRF 501 (1417)
Q Consensus 428 iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn-----Iae~G-IdIP~V~~ 501 (1417)
+||++||++-+.++++.+..+.....++.+..++||.+...|...++. | ..|||+|+ .++++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999999999887655447889999999999988866665 5 89999997 45555 88888877
Q ss_pred EE
Q psy3476 502 VV 503 (1417)
Q Consensus 502 VI 503 (1417)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 66
No 320
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.26 E-value=0.42 Score=53.06 Aligned_cols=22 Identities=50% Similarity=0.724 Sum_probs=19.1
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+.+++|+||.||||||.+
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHH
Confidence 4568899999999999999954
No 321
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=86.18 E-value=2.4 Score=49.99 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=35.2
Q ss_pred CccEEEEccchhHHhhcCCCCCCCCCCCcchh--hHHhhhhhhHHHHHHHHhhh
Q psy3476 125 KTKIVFITEGLLLRQDSGLITDIPGPDASLSS--RERALRHGEIKLLQAIKRKK 176 (1417)
Q Consensus 125 ~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 176 (1417)
+.-|+++-+|..++.|..+.+..|..+..+-. +.+....|.-.|.+.|++.+
T Consensus 93 k~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~~~~g~~~L~~~L~~~D 146 (308)
T COG0324 93 KLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAELAELGNDALHAELKKID 146 (308)
T ss_pred CCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhC
Confidence 46799999999999999886555433333322 23456777777777777555
No 322
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.10 E-value=3.5 Score=53.54 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=26.0
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
+....++++||||+| .+..+-...+++.+..-+....+|+
T Consensus 117 p~~~~~KViIIDEad--~Lt~~a~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 117 PVQARWKVYVIDECH--MLSTAAFNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred hhcCCceEEEEECcc--ccCHHHHHHHHHHHhcCCcCeEEEE
Confidence 345678999999999 4445556667777765444444444
No 323
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=86.01 E-value=1.2 Score=46.24 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcchhHHHHHH
Q psy3476 44 KQEIIDTVLKERVVIIAGDTGCGKSTQIPQY 74 (1417)
Q Consensus 44 q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ 74 (1417)
-+.+.+.+..++++++.|+.|+||||.+-.+
T Consensus 12 ~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l 42 (133)
T TIGR00150 12 GKAFAKPLDFGTVVLLKGDLGAGKTTLVQGL 42 (133)
T ss_pred HHHHHHhCCCCCEEEEEcCCCCCHHHHHHHH
Confidence 3456667778899999999999999865333
No 324
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=85.78 E-value=0.7 Score=47.56 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=15.9
Q ss_pred eEEEEcCCCcchhHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~i 75 (1417)
+++++|++||||||.+-++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 57999999999998554443
No 325
>KOG1131|consensus
Probab=85.74 E-value=2 Score=52.74 Aligned_cols=35 Identities=14% Similarity=0.361 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
.|-.++-.++..+.+.++.+|+|+|||..+...+.
T Consensus 23 ~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~ 57 (755)
T KOG1131|consen 23 EYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLII 57 (755)
T ss_pred HHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHH
Confidence 44556777888889999999999999976555443
No 326
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=85.50 E-value=2.5 Score=55.74 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=37.2
Q ss_pred HHHHHHHHHhc-----CCeEEEEcCCCcchhHH--HHHHHHHc-CCCcEEEecchHHHHHHHHH
Q psy3476 43 YKQEIIDTVLK-----ERVVIIAGDTGCGKSTQ--IPQYLVQA-GFQRIACTQPRRIACISLSK 98 (1417)
Q Consensus 43 ~q~~il~~i~~-----~~~~iI~a~TGsGKTt~--ipq~ile~-~~~~i~~tqPrr~aa~~~a~ 98 (1417)
+-.+|.+++.+ +++++|.|+||+|||.. +|..++.. ...+|+|.-.+..+-.|+..
T Consensus 33 M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 33 MIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVS 96 (697)
T ss_pred HHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHh
Confidence 34456677766 47899999999999975 44433332 23578777777665555543
No 327
>PF13173 AAA_14: AAA domain
Probab=85.47 E-value=0.77 Score=46.90 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=19.7
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
++++++|.||.||||||.+-|++-
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~ 24 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAK 24 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999997666554
No 328
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=85.43 E-value=0.49 Score=53.33 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.6
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+..+.|.||+||||||.+
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLL 48 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLL 48 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 468899999999999999964
No 329
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=85.25 E-value=0.92 Score=55.06 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=17.0
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+..++|+|||||||||.+
T Consensus 147 ~~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLA 166 (372)
T ss_pred hcCCEEEEECCCCCCHHHHH
Confidence 35678899999999999965
No 330
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=85.14 E-value=2 Score=56.56 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=66.5
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch-hhccCCcCCeEEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI-AETSITIDGIRFVV 503 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI-ae~GIdIP~V~~VI 503 (1417)
+.+++|.+||+.-+.+.++.++++... .++.+..+||+++..+|..++....+|...|+|+|.. +...+.+.++.+||
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~-~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEP-LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhh-cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 568999999999999999998876543 3588999999999999999999999999999999974 44467788887766
No 331
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.99 E-value=2.6 Score=51.13 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=18.7
Q ss_pred HHHHHHhcCC---eEEEEcCCCcchhHH
Q psy3476 46 EIIDTVLKER---VVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 46 ~il~~i~~~~---~~iI~a~TGsGKTt~ 70 (1417)
.+.+.+.+++ .++++||.|+|||+.
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~ 55 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTC 55 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHH
Confidence 4555555543 788999999999973
No 332
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.97 E-value=0.72 Score=55.51 Aligned_cols=20 Identities=35% Similarity=0.715 Sum_probs=17.2
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+.+++|+|||||||||.+-
T Consensus 121 ~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 46799999999999999653
No 333
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=84.69 E-value=1 Score=50.56 Aligned_cols=26 Identities=42% Similarity=0.649 Sum_probs=23.0
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHHc
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQA 78 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile~ 78 (1417)
.+.+++|.|++|||||+...||+.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~ 43 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG 43 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh
Confidence 56799999999999999999988764
No 334
>PRK14873 primosome assembly protein PriA; Provisional
Probab=84.64 E-value=2.1 Score=55.77 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=64.4
Q ss_pred HHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhc
Q psy3476 413 LSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492 (1417)
Q Consensus 413 l~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~ 492 (1417)
++.+.+.+ ..++++||.+|....+..+.+.++.... ...+..+||+++..+|.+.+....+|+.+|+|.|--|--
T Consensus 178 l~~i~~~l--~~Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF 252 (665)
T PRK14873 178 AAAAAATL--RAGRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF 252 (665)
T ss_pred HHHHHHHH--HcCCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE
Confidence 34444444 2367899999999999999999987552 245888999999999999999999999999999964331
Q ss_pred cCCcCCeEEEE
Q psy3476 493 SITIDGIRFVV 503 (1417)
Q Consensus 493 GIdIP~V~~VI 503 (1417)
.-+++...||
T Consensus 253 -aP~~~LgLII 262 (665)
T PRK14873 253 -APVEDLGLVA 262 (665)
T ss_pred -eccCCCCEEE
Confidence 2344544444
No 335
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.49 E-value=3.2 Score=53.86 Aligned_cols=40 Identities=23% Similarity=0.384 Sum_probs=26.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
+.+.+++++||||+| .+..+-...+++.+..-+....+|+
T Consensus 117 P~~~~~KVvIIdea~--~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 117 PQIGKYKIYIIDEVH--MLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred cccCCcEEEEEECcc--cCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 567789999999999 3444556666666665444444444
No 336
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=84.06 E-value=3.8 Score=49.09 Aligned_cols=42 Identities=14% Similarity=0.302 Sum_probs=29.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+....++++||||+| .++..-...++|.+..-+++..+|+.|
T Consensus 102 ~~~~~~kv~iI~~a~--~m~~~aaNaLLK~LEEPp~~~~fiL~t 143 (328)
T PRK05707 102 AQLGGRKVVLIEPAE--AMNRNAANALLKSLEEPSGDTVLLLIS 143 (328)
T ss_pred cccCCCeEEEECChh--hCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 445678999999999 456667788888777655555555444
No 337
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=83.99 E-value=0.59 Score=55.72 Aligned_cols=22 Identities=36% Similarity=0.755 Sum_probs=18.8
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+..+++.||+||||||.+
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlL 46 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLL 46 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3567899999999999999953
No 338
>PRK05580 primosome assembly protein PriA; Validated
Probab=83.98 E-value=2.2 Score=55.99 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=61.3
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
++++||.+|+++-+.++.+.+++.. +..+..+||+++..+|.+.+.....|..+|+|+|.-+-. +.+.++.+||
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liV 263 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLII 263 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEE
Confidence 5689999999999999999987643 357899999999999999999999999999999975432 4566776555
No 339
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=83.84 E-value=1.1 Score=57.59 Aligned_cols=31 Identities=19% Similarity=0.459 Sum_probs=21.2
Q ss_pred HHHHHHHHH-HHh-cCCeEEEEcCCCcchhHHH
Q psy3476 41 AQYKQEIID-TVL-KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 41 ~~~q~~il~-~i~-~~~~~iI~a~TGsGKTt~i 71 (1417)
...+.+.+. .+. .+..++|+|||||||||.+
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 333333443 343 4678899999999999865
No 340
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.79 E-value=2.7 Score=53.23 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=60.8
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
++++||.+|+..-+.++++.+++.. +..+..+||+++..+|..++....+|..+|||+|..+-. ..++++.+||
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lII 98 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLII 98 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEE
Confidence 5689999999999999999988643 346788999999999999999999999999999976443 4566666555
No 341
>PRK08233 hypothetical protein; Provisional
Probab=83.79 E-value=1.3 Score=47.63 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=15.1
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
..++.|.|++||||||+.
T Consensus 3 ~~iI~I~G~~GsGKtTla 20 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLT 20 (182)
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 357889999999999854
No 342
>KOG2228|consensus
Probab=83.76 E-value=15 Score=43.64 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=26.2
Q ss_pred EEEEecCccc--ccCcchHHHHHHHHhccCCCCcEEEEccCCCH
Q psy3476 322 VLVLDEIHER--HLHGDFLLGVIKCLLHSTAEVKIILMSATINI 363 (1417)
Q Consensus 322 ~VIlDEaHER--~l~~d~ll~llk~l~~~r~~~qvIlmSATln~ 363 (1417)
++|+||+|-- +.+.-.+-.+.......+.++-+|++|--+|.
T Consensus 140 iFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 140 IFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred EEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 5688899821 11222334445555556778888999888873
No 343
>PF12846 AAA_10: AAA-like domain
Probab=83.72 E-value=1 Score=52.04 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHHcCC--CcEEEecchHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYLVQAGF--QRIACTQPRRI 91 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~ile~~~--~~i~~tqPrr~ 91 (1417)
|.+++|.|+||||||+.+-..+.+... ..+++.-|...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~ 40 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGD 40 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCch
Confidence 568899999999999987655543221 45666677633
No 344
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.72 E-value=0.64 Score=52.78 Aligned_cols=22 Identities=50% Similarity=0.782 Sum_probs=18.9
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+.++.|.||+||||||.+
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLL 46 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLL 46 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHH
Confidence 3468899999999999999953
No 345
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=83.61 E-value=2.8 Score=44.90 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=33.5
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCC
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 361 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATl 361 (1417)
.-..++++|||||| .+..+...+++|.+..-+.+..+|+.+-..
T Consensus 99 ~~~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 99 SEGKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp TTSSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred hcCCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 34578999999999 566677888899888777788777776554
No 346
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=83.53 E-value=0.89 Score=48.98 Aligned_cols=18 Identities=39% Similarity=0.743 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
++.++|.||+||||||++
T Consensus 1 g~ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLV 18 (180)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467899999999999854
No 347
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=83.49 E-value=7.5 Score=44.05 Aligned_cols=88 Identities=13% Similarity=0.245 Sum_probs=53.6
Q ss_pred HHHhcCCCcHHHHHHHHHHHhc---CCeEEEEcCCCcchhHHHHHH---HHHcCCCcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 32 RETQNSLPVAQYKQEIIDTVLK---ERVVIIAGDTGCGKSTQIPQY---LVQAGFQRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 32 ~~~r~~lp~~~~q~~il~~i~~---~~~~iI~a~TGsGKTt~ipq~---ile~~~~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
.+...++=+.+.|.++...+.+ +++.+.+.-+|.|||+.|.-. ++.++..=+.+.-|+-++ .+...-+...++
T Consensus 16 ~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll-~q~~~~L~~~lg 94 (229)
T PF12340_consen 16 FEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALL-EQMRQMLRSRLG 94 (229)
T ss_pred HHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHH-HHHHHHHHHHHH
Confidence 3455677788889999888875 468999999999999975433 233443334455555433 333444444444
Q ss_pred cccCCeEEEEEeeccc
Q psy3476 106 SQYSNLVGYQIRFEKH 121 (1417)
Q Consensus 106 ~~~g~~vGy~ir~e~~ 121 (1417)
.-+|..| |.+.|+..
T Consensus 95 ~l~~r~i-~~lpFsR~ 109 (229)
T PF12340_consen 95 GLLNRRI-YHLPFSRS 109 (229)
T ss_pred HHhCCee-EEecccCC
Confidence 4344433 56666544
No 348
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.32 E-value=1.9 Score=54.05 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=33.2
Q ss_pred cCCeEEEEcCCCcchhHHHHHHH----HHcCCCc--EEEecchHHHHHHHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYL----VQAGFQR--IACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~i----le~~~~~--i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
.+.++.++||||+||||.+.... .+.|..+ ++-+-+-|+++..-.+.++..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~Aeil 312 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKIL 312 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHh
Confidence 45789999999999999765443 3344333 3444566777665555555543
No 349
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.29 E-value=1.2 Score=56.01 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=21.4
Q ss_pred HHHHHHHHHHH-h-cCCeEEEEcCCCcchhHHHH
Q psy3476 41 AQYKQEIIDTV-L-KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 41 ~~~q~~il~~i-~-~~~~~iI~a~TGsGKTt~ip 72 (1417)
...+.+.+..+ . .+..++|+|||||||||.+-
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 34444444433 3 34588999999999999653
No 350
>PHA02244 ATPase-like protein
Probab=83.28 E-value=2 Score=51.87 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHH
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.....+...+..+..++|.||||||||+.+
T Consensus 107 ~~~~ri~r~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 107 YETADIAKIVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 344566777888999999999999999744
No 351
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=83.27 E-value=2.5 Score=55.96 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=57.7
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEE-ecCCCCHHHHHHHhccCCCCCceEEEecchh
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLP-LHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~-LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa 490 (1417)
..++++++-+||..-+.++++.|.++.+....+.+.. +||.|+.++++.+.+++.+|..+|+|+|+-.
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 4467899999999999999999998776544344433 9999999999999999999999999999854
No 352
>PRK04296 thymidine kinase; Provisional
Probab=83.20 E-value=1 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+.++++.||+|+||||.+.+++..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~ 25 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYN 25 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHH
Confidence 457899999999999977666554
No 353
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.11 E-value=1.4 Score=51.36 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=24.6
Q ss_pred HHHH-HHhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 46 EIID-TVLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 46 ~il~-~i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
.+++ .+..++.++++||||||||..+-.++.+
T Consensus 24 ~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 24 YLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHcCCcEEEECCCCCchhHHHHhhhcc
Confidence 3444 3457789999999999999988777644
No 354
>PRK00300 gmk guanylate kinase; Provisional
Probab=82.95 E-value=0.98 Score=49.80 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=17.1
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..++.++|.||+||||||++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35789999999999999854
No 355
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.82 E-value=0.84 Score=51.84 Aligned_cols=22 Identities=50% Similarity=0.747 Sum_probs=18.1
Q ss_pred HhcCCeEEEEcCCCcchhHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
+.+...+||+|+|||||||...
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred cccCceEEEECCCCCCchhhHH
Confidence 4567799999999999998543
No 356
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=82.81 E-value=1.9 Score=51.23 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCcchhHHHH
Q psy3476 45 QEIIDTVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 45 ~~il~~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
..++..+..++.++|.|++|||||+.+-
T Consensus 55 ~~vl~~l~~~~~ilL~G~pGtGKTtla~ 82 (327)
T TIGR01650 55 KAICAGFAYDRRVMVQGYHGTGKSTHIE 82 (327)
T ss_pred HHHHHHHhcCCcEEEEeCCCChHHHHHH
Confidence 3477777788999999999999997443
No 357
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=82.66 E-value=2.5 Score=49.80 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=29.0
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
..++.+||||||| .+..+-...+++.+..-+.+..+|+.+
T Consensus 107 ~~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 107 EGGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 4678999999999 555566777777776666666666654
No 358
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=82.60 E-value=2.4 Score=55.45 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=33.9
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC---CCcEEEecchHHHHHHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACISLS 97 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~---~~~i~~tqPrr~aa~~~a 97 (1417)
.+.+++.+++.++|.||||+|||.....+.+..+ ..++++..+++..--|+-
T Consensus 26 ~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~ 80 (654)
T COG1199 26 AVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLL 80 (654)
T ss_pred HHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHH
Confidence 3446667788899999999999987655554433 145666656654444443
No 359
>PRK13764 ATPase; Provisional
Probab=82.39 E-value=1.8 Score=55.64 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=20.0
Q ss_pred HHHHHH-hcCCeEEEEcCCCcchhHHH
Q psy3476 46 EIIDTV-LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 46 ~il~~i-~~~~~~iI~a~TGsGKTt~i 71 (1417)
++++.+ ..+.+++|+|+|||||||.+
T Consensus 248 ~l~~~l~~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 248 KLKERLEERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHH
Confidence 445544 34678999999999999965
No 360
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=82.35 E-value=1 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=18.8
Q ss_pred eEEEEcCCCcchhHHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~ile 77 (1417)
.++|.||+|||||+...+++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999988877765
No 361
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=82.31 E-value=9.2 Score=46.93 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=24.3
Q ss_pred CccEEEEecCcccccCcchHHHHHHHHhccCCCC-cEEEEccCC
Q psy3476 319 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-KIILMSATI 361 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~-qvIlmSATl 361 (1417)
++++++||.++-..-.......+...+...+..- |+|+.|-..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~ 218 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRP 218 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCC
Confidence 6788999999833333234555555555555444 555555433
No 362
>PLN02840 tRNA dimethylallyltransferase
Probab=82.28 E-value=4.9 Score=49.50 Aligned_cols=28 Identities=29% Similarity=0.210 Sum_probs=21.2
Q ss_pred CCccEEEEccchhHHhhcCCCCCCCCCC
Q psy3476 124 EKTKIVFITEGLLLRQDSGLITDIPGPD 151 (1417)
Q Consensus 124 ~~t~I~~~T~g~llr~l~~d~~~~~~~~ 151 (1417)
.+..|+++-+|..++.+..+...+|.++
T Consensus 110 gkiPIvVGGTGlYl~aLl~G~~~~p~~~ 137 (421)
T PLN02840 110 GRVPIVAGGTGLYLRWYIYGKPDVPKSS 137 (421)
T ss_pred CCCEEEEcCccHHHHHHhcCCCCCCCCC
Confidence 3456999999999999998855555443
No 363
>PRK10867 signal recognition particle protein; Provisional
Probab=82.24 E-value=6.7 Score=48.70 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=32.5
Q ss_pred CeEEEEcCCCcchhHHHHHH---HHHc-CC-CcEEEecchHHHHHHHHHHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQY---LVQA-GF-QRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~---ile~-~~-~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.+++++|++||||||.+..+ +.+. +. .-++.+-++|.+|..-.+.++..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~ 154 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQ 154 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhh
Confidence 47889999999999975543 3344 43 24666778888776444444443
No 364
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.16 E-value=1.1 Score=52.33 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=21.4
Q ss_pred CCcHHHHHHHHHHH------hcCCeEEEEcCCCcchhH
Q psy3476 38 LPVAQYKQEIIDTV------LKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 38 lp~~~~q~~il~~i------~~~~~~iI~a~TGsGKTt 69 (1417)
..+|.|-.++-..- .+..++++.||||||||.
T Consensus 75 VAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTl 112 (408)
T COG1219 75 VAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTL 112 (408)
T ss_pred eeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHH
Confidence 44566655554321 233588999999999994
No 365
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=82.11 E-value=2.6 Score=55.80 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHH---HHHHH-cCC--CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP---QYLVQ-AGF--QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ip---q~ile-~~~--~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
+.+.|.+++.. ....++|.|..|||||+.+. .++++ .+. .+|+++--++-||..+-+|+.+..+
T Consensus 10 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 10 LNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred cCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 34567777664 34677889999999998754 34554 343 4788888888899999998877654
No 366
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=82.02 E-value=0.86 Score=45.64 Aligned_cols=14 Identities=43% Similarity=0.601 Sum_probs=12.5
Q ss_pred EEEEcCCCcchhHH
Q psy3476 57 VIIAGDTGCGKSTQ 70 (1417)
Q Consensus 57 ~iI~a~TGsGKTt~ 70 (1417)
++|.|++||||||.
T Consensus 1 I~i~G~~GsGKtTi 14 (129)
T PF13238_consen 1 IGISGIPGSGKTTI 14 (129)
T ss_dssp EEEEESTTSSHHHH
T ss_pred CEEECCCCCCHHHH
Confidence 58999999999984
No 367
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.01 E-value=1.3 Score=52.54 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=24.5
Q ss_pred HHHHHhcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
+..++..++.++|+|+|||||||.+-..+
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lnall 164 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNALL 164 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHH
Confidence 77788899999999999999999654433
No 368
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=81.94 E-value=1 Score=51.14 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=23.7
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHHc
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQA 78 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile~ 78 (1417)
..+.+++|.|++|||||+...||+++.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~ 45 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG 45 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998864
No 369
>PF05729 NACHT: NACHT domain
Probab=81.88 E-value=1.2 Score=46.59 Aligned_cols=49 Identities=24% Similarity=0.336 Sum_probs=30.5
Q ss_pred EEEEecCcccccCcch-----HHHHHHHHhcc--CCCCcEEEEccCCCHHHHHHHh
Q psy3476 322 VLVLDEIHERHLHGDF-----LLGVIKCLLHS--TAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 322 ~VIlDEaHER~l~~d~-----ll~llk~l~~~--r~~~qvIlmSATln~~~~~~~f 370 (1417)
++|||=+||-...... ....+..+... .++.++++.|.+-....+..++
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~ 139 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRL 139 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhc
Confidence 3788888755443322 33344444433 6788888888776666677777
No 370
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=81.78 E-value=2.6 Score=53.00 Aligned_cols=63 Identities=25% Similarity=0.352 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHH---HHHHcCC-----CcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ---YLVQAGF-----QRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq---~ile~~~-----~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
..|++|+.. ..++++||+|..||||||...+ |++-... ..|++.-|-|+-. +-..+|-=|+|+
T Consensus 215 kEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFl-eYis~VLPeLGe 285 (747)
T COG3973 215 KEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFL-EYISRVLPELGE 285 (747)
T ss_pred HhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHH-HHHHHhchhhcc
Confidence 456666654 4678999999999999998664 3432211 2499999998763 333456566654
No 371
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=81.74 E-value=0.97 Score=51.16 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=23.6
Q ss_pred HHHHhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 48 IDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 48 l~~i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+.-+..+++++|.|+||+|||+.+.|++..
T Consensus 7 ~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~ 36 (242)
T cd00984 7 TGGLQPGDLIIIAARPSMGKTAFALNIAEN 36 (242)
T ss_pred hcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 334567889999999999999877666554
No 372
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=81.65 E-value=0.78 Score=46.95 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=18.2
Q ss_pred hcCCeEEEEcCCCcchhHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ip 72 (1417)
..++.+.|.|+.||||||.+-
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~ 29 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLK 29 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEEccCCCcccccee
Confidence 568899999999999999653
No 373
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=81.63 E-value=3 Score=54.79 Aligned_cols=62 Identities=26% Similarity=0.386 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHH---HHHH-cCC--CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ---YLVQ-AGF--QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq---~ile-~~~--~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
+.|.+++.. ....++|.|..|||||+.+.. ++++ .+. .+|+++-.++-||..+-+|+.+.++
T Consensus 4 ~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 4 PQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred HHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 456677654 456789999999999987654 4444 343 4688877778888899999887664
No 374
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=81.58 E-value=1.1 Score=51.87 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.5
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
..+.+++|.|++|||||+...|++.+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999988888775
No 375
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=81.48 E-value=9.4 Score=45.77 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=24.7
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
+...+.++|||||+| .+..+....+++.+...+++..+|+
T Consensus 113 p~~~~~~vviidea~--~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 113 PSSGKYKVYIIDEVH--MLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred cccCCceEEEEeChh--hcCHHHHHHHHHHHhCCccceeEEE
Confidence 456678899999999 3344445556666644344444444
No 376
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=81.43 E-value=1.7 Score=46.91 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=33.6
Q ss_pred EEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHHHHHH
Q psy3476 57 VIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 57 ~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
++|.|++|||||+...+++.+.+ .++++...-+..-..+.+|+....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~-~~~~y~at~~~~d~em~~rI~~H~ 48 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG-GPVTYIATAEAFDDEMAERIARHR 48 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-CCeEEEEccCcCCHHHHHHHHHHH
Confidence 68999999999999999987744 455555444444566777766543
No 377
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.23 E-value=1.2 Score=45.87 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=12.7
Q ss_pred eEEEEcCCCcchhH
Q psy3476 56 VVIIAGDTGCGKST 69 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt 69 (1417)
.+++.||+|||||+
T Consensus 1 ~vlL~G~~G~GKt~ 14 (139)
T PF07728_consen 1 PVLLVGPPGTGKTT 14 (139)
T ss_dssp EEEEEESSSSSHHH
T ss_pred CEEEECCCCCCHHH
Confidence 47999999999996
No 378
>KOG1970|consensus
Probab=81.21 E-value=1.3 Score=54.99 Aligned_cols=19 Identities=42% Similarity=1.017 Sum_probs=16.6
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+++++|+||+||||||.+
T Consensus 109 ~~~iLLltGPsGcGKSTtv 127 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTV 127 (634)
T ss_pred CceEEEEeCCCCCCchhHH
Confidence 5679999999999999854
No 379
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=81.06 E-value=2.6 Score=45.85 Aligned_cols=19 Identities=42% Similarity=0.733 Sum_probs=16.0
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
+++.+||+||+||||||..
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~ 19 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLA 19 (183)
T ss_dssp SSSEEEEESSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3678999999999999743
No 380
>PRK14530 adenylate kinase; Provisional
Probab=80.91 E-value=1.5 Score=48.92 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+..++|.|++||||||+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQS 20 (215)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 557899999999999854
No 381
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=80.80 E-value=7.1 Score=52.64 Aligned_cols=14 Identities=36% Similarity=0.819 Sum_probs=12.8
Q ss_pred eEEEEcCCCcchhH
Q psy3476 56 VVIIAGDTGCGKST 69 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt 69 (1417)
++++.||||+|||.
T Consensus 598 ~~lf~Gp~GvGKT~ 611 (852)
T TIGR03345 598 VFLLVGPSGVGKTE 611 (852)
T ss_pred EEEEECCCCCCHHH
Confidence 58999999999996
No 382
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=80.36 E-value=2.7 Score=55.65 Aligned_cols=63 Identities=13% Similarity=0.216 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHH---HHHHHc-CC--CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP---QYLVQA-GF--QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ip---q~ile~-~~--~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
.+.|.+++.. ....++|.|..|||||+.+. .++++. +. .+|+++--++-||..+.+|+.+..+
T Consensus 6 n~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 6 NDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred CHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4557777654 34577999999999998754 345543 43 4788888888888888888877654
No 383
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=80.36 E-value=1.1 Score=49.15 Aligned_cols=21 Identities=38% Similarity=0.825 Sum_probs=18.8
Q ss_pred HHhcCCeEEEEcCCCcchhHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ 70 (1417)
.|.+++.+++.||.||||||.
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTL 47 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTL 47 (259)
T ss_pred eecCCCEEEEEcCCCccHHHH
Confidence 457899999999999999985
No 384
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=80.31 E-value=3 Score=49.57 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.0
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+..+.++.|+|++|||||+...|++..
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 345789999999999999877777654
No 385
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=80.23 E-value=1.1 Score=44.64 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=19.0
Q ss_pred hcCCeEEEEcCCCcchhHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQY 74 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ 74 (1417)
..++.+.|.||+||||||.+...
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALEL 35 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHh
Confidence 45788999999999999976543
No 386
>PLN02796 D-glycerate 3-kinase
Probab=80.18 E-value=3.6 Score=49.35 Aligned_cols=16 Identities=44% Similarity=0.839 Sum_probs=13.6
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
++-|+|++||||||.+
T Consensus 102 iIGI~G~sGSGKSTLa 117 (347)
T PLN02796 102 VIGISAPQGCGKTTLV 117 (347)
T ss_pred EEEEECCCCCcHHHHH
Confidence 3788999999999853
No 387
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=80.18 E-value=4.1 Score=52.28 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=25.5
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
+...+++++||||+| .+.......+++.+..-++...+|+
T Consensus 115 p~~~~~KVvIIDEa~--~Ls~~a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 115 PASSRYRVYIIDEVH--MLSNSAFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred hhcCCCEEEEEEChh--hcCHHHHHHHHHhhccCCCCEEEEE
Confidence 456789999999999 4444455666666654333443443
No 388
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=80.08 E-value=1.3 Score=45.98 Aligned_cols=15 Identities=40% Similarity=0.884 Sum_probs=13.0
Q ss_pred EEEEcCCCcchhHHH
Q psy3476 57 VIIAGDTGCGKSTQI 71 (1417)
Q Consensus 57 ~iI~a~TGsGKTt~i 71 (1417)
++|+|||||||||++
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999844
No 389
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=80.07 E-value=2 Score=43.08 Aligned_cols=14 Identities=36% Similarity=0.767 Sum_probs=12.4
Q ss_pred EEEEcCCCcchhHH
Q psy3476 57 VIIAGDTGCGKSTQ 70 (1417)
Q Consensus 57 ~iI~a~TGsGKTt~ 70 (1417)
++|.||.|||||+.
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58999999999973
No 390
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=80.05 E-value=6 Score=49.53 Aligned_cols=39 Identities=28% Similarity=0.490 Sum_probs=23.8
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
..++++|||||+| .+..+....+++.+..-++...+|+.
T Consensus 119 ~~~~kvvIIdead--~lt~~~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 119 KSRYKIYIIDEVH--MLTKEAFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred cCCCEEEEEecHH--hhCHHHHHHHHHHhhcCCCCceEEEE
Confidence 4578899999999 33333445556555554444445543
No 391
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=80.02 E-value=1.2 Score=48.70 Aligned_cols=18 Identities=22% Similarity=0.634 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+.+++|.||+||||||.+
T Consensus 2 g~~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLL 19 (186)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 568899999999999854
No 392
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=80.01 E-value=1.1 Score=49.78 Aligned_cols=20 Identities=45% Similarity=0.843 Sum_probs=17.9
Q ss_pred HhcCCeEEEEcCCCcchhHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ 70 (1417)
|.+++++-+.||.||||||.
T Consensus 30 i~~~~VTAlIGPSGcGKST~ 49 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTL 49 (253)
T ss_pred ccCCceEEEECCCCcCHHHH
Confidence 45889999999999999984
No 393
>PLN02165 adenylate isopentenyltransferase
Probab=79.97 E-value=1.4 Score=52.52 Aligned_cols=42 Identities=31% Similarity=0.491 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCcH----HHHHHHHHHHhcCCeEEEEcCCCcchhHH
Q psy3476 29 MKIRETQNSLPVA----QYKQEIIDTVLKERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 29 ~~~~~~r~~lp~~----~~q~~il~~i~~~~~~iI~a~TGsGKTt~ 70 (1417)
..+-..|..||-. .+|+.....=..+.+++|.||||||||+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iivIiGPTGSGKStL 59 (334)
T PLN02165 14 LPITIPRRKLPPPRSVVTMTSVAMEQNCKDKVVVIMGATGSGKSRL 59 (334)
T ss_pred CccccccccCCCCcccccccccccccCCCCCEEEEECCCCCcHHHH
Confidence 3444556666642 34444433334567999999999999974
No 394
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=79.87 E-value=8.6 Score=47.86 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcchhHHHHHH---HHHcCCC-cEEEecchHHHHHHHHHHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQY---LVQAGFQ-RIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~---ile~~~~-~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.+++++|++|+||||.+... +.+.++. .++.+-+.|.++....+.++..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~ 148 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEK 148 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 47889999999999975433 3344442 3445555666655544444444
No 395
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=79.64 E-value=2.7 Score=49.95 Aligned_cols=53 Identities=19% Similarity=0.324 Sum_probs=32.6
Q ss_pred hhchHHHHHHhcCCCcHHHHHHHHHHHh-----cCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 25 FSTLMKIRETQNSLPVAQYKQEIIDTVL-----KERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 25 ~~~~~~~~~~r~~lp~~~~q~~il~~i~-----~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
|.+-.++.+.|...+-..-=-+-++.+. .+.++.|.|++|||||+...|+++.
T Consensus 62 ~~ta~~~~~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 62 FITAFEISQKRKKVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred CccHHHHHHhhccCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 5555666665544322111123355544 4579999999999999877666543
No 396
>PRK09183 transposase/IS protein; Provisional
Probab=79.58 E-value=7.4 Score=45.01 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=19.8
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQY 74 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~ 74 (1417)
+..+.+++|.||+|||||+....+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 567789999999999999865444
No 397
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=79.53 E-value=1.9 Score=46.24 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=20.1
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
++.+.+.. +.+++.|++|.||||.+=
T Consensus 28 ~l~~~l~~-k~~vl~G~SGvGKSSLiN 53 (161)
T PF03193_consen 28 ELKELLKG-KTSVLLGQSGVGKSSLIN 53 (161)
T ss_dssp HHHHHHTT-SEEEEECSTTSSHHHHHH
T ss_pred HHHHHhcC-CEEEEECCCCCCHHHHHH
Confidence 34445444 999999999999999653
No 398
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=79.48 E-value=4.4 Score=46.52 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
...++|.||+||||||.+-.+.-+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHh
Confidence 448899999999999977665544
No 399
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=79.46 E-value=4.2 Score=53.03 Aligned_cols=78 Identities=12% Similarity=0.099 Sum_probs=65.2
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhh-ccCCcCCeEEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAE-TSITIDGIRFVV 503 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae-~GIdIP~V~~VI 503 (1417)
+.+++|-+||+.-+.+.++.++++... .++.+..+||+++..+|..+++...+|...|||+|...- .++.+.++.+||
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAP-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcc-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 568999999999999999988876543 368899999999999999999999999999999997543 356677777665
No 400
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=79.45 E-value=1.4 Score=49.04 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=21.0
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
..+.++.|.|++|||||+...|++.+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~ 42 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE 42 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999876666554
No 401
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=79.36 E-value=1.7 Score=46.92 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=14.7
Q ss_pred eEEEEcCCCcchhHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq 73 (1417)
+++|.|++||||||+.-.
T Consensus 1 ~i~i~G~pGsGKst~a~~ 18 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAK 18 (183)
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 478999999999985433
No 402
>KOG2373|consensus
Probab=79.21 E-value=0.97 Score=52.94 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=22.4
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHHc
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQA 78 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile~ 78 (1417)
+.+..+|+.|||||||||-+-.|-++.
T Consensus 271 R~GElTvlTGpTGsGKTTFlsEYsLDL 297 (514)
T KOG2373|consen 271 RPGELTVLTGPTGSGKTTFLSEYSLDL 297 (514)
T ss_pred CCCceEEEecCCCCCceeEehHhhHHH
Confidence 456799999999999999877776663
No 403
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=79.16 E-value=2.9 Score=44.17 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecch
Q psy3476 43 YKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPR 89 (1417)
Q Consensus 43 ~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPr 89 (1417)
.-+.+-+.+..+.++++.|+=|+||||.+--++..-+. ..-|+.|+
T Consensus 14 lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~-~~~V~SPT 59 (149)
T COG0802 14 LGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV-DGNVKSPT 59 (149)
T ss_pred HHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC-CCcccCCC
Confidence 34566677789999999999999999865444444333 33344444
No 404
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=79.14 E-value=1.5 Score=45.38 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=16.4
Q ss_pred eEEEEcCCCcchhHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~il 76 (1417)
+++|.|++|||||+.+-+++.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL 21 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH
Confidence 468999999999986655443
No 405
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=79.09 E-value=1.5 Score=48.58 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=20.4
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
..+.++.|.||+|||||+...|++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999866655543
No 406
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=78.85 E-value=8.3 Score=50.31 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=58.2
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc-----hhhc-cCCcCC
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN-----IAET-SITIDG 498 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn-----Iae~-GIdIP~ 498 (1417)
..++||.+|+++-+.++++.+..+.....++.+..+||+.+.+.+...+. +...|||+|+ .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~----~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR----QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 45799999999999999999887766556889999999998887766553 2357999995 3333 467788
Q ss_pred eEEEE
Q psy3476 499 IRFVV 503 (1417)
Q Consensus 499 V~~VI 503 (1417)
+.+||
T Consensus 150 l~~lV 154 (629)
T PRK11634 150 LSGLV 154 (629)
T ss_pred ceEEE
Confidence 87666
No 407
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=78.82 E-value=4.7 Score=49.47 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=26.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccC
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 360 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSAT 360 (1417)
+...+++++||||+| + ++......+++.+..-+++ .++++.||
T Consensus 113 p~~~~~kViiIDead-~-m~~~aanaLLk~LEep~~~-~~fIL~a~ 155 (394)
T PRK07940 113 PSTGRWRIVVIEDAD-R-LTERAANALLKAVEEPPPR-TVWLLCAP 155 (394)
T ss_pred cccCCcEEEEEechh-h-cCHHHHHHHHHHhhcCCCC-CeEEEEEC
Confidence 334578899999999 3 3444556677766543334 44555554
No 408
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=78.70 E-value=1.7 Score=46.48 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=12.6
Q ss_pred cCCeEEEEcCCCcchhHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq 73 (1417)
..++++|.|+.|+|||+.+-.
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~ 43 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRA 43 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 457899999999999986443
No 409
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=78.51 E-value=1.6 Score=47.45 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.1
Q ss_pred HhcCCeEEEEcCCCcchhHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
+..+..+.|.||.||||||.+-
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~ 39 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVN 39 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999999764
No 410
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=78.50 E-value=2.8 Score=47.89 Aligned_cols=39 Identities=33% Similarity=0.547 Sum_probs=25.9
Q ss_pred HHhcCC-eEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecc
Q psy3476 50 TVLKER-VVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQP 88 (1417)
Q Consensus 50 ~i~~~~-~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqP 88 (1417)
.+.... .++|.|++|||||+.+.-.+... .+..|++..|
T Consensus 8 ~l~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 8 SLLKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 344454 78899999999999877666543 3345554433
No 411
>PRK14737 gmk guanylate kinase; Provisional
Probab=78.42 E-value=1.6 Score=47.93 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=17.5
Q ss_pred cCCeEEEEcCCCcchhHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQY 74 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ 74 (1417)
.+..++|+||+||||||.+-..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l 24 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQAL 24 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999855433
No 412
>PTZ00035 Rad51 protein; Provisional
Probab=78.42 E-value=3.9 Score=49.15 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=30.2
Q ss_pred hhchHHHHHHhcCCCcHHHHHHHHHHHh-----cCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 25 FSTLMKIRETQNSLPVAQYKQEIIDTVL-----KERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 25 ~~~~~~~~~~r~~lp~~~~q~~il~~i~-----~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
|.+-.++.+.|...+-..-=-.-++.+. .+.++.|.|+.|||||+...++..
T Consensus 84 ~~ta~~~~~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~ 140 (337)
T PTZ00035 84 FISATEYLEARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCV 140 (337)
T ss_pred CCCHHHHHHhhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHH
Confidence 4444445444433222111223455554 467899999999999987655543
No 413
>PRK00698 tmk thymidylate kinase; Validated
Probab=78.37 E-value=2.5 Score=46.37 Aligned_cols=19 Identities=47% Similarity=0.665 Sum_probs=16.4
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..++|.|+.||||||++
T Consensus 2 ~~~~I~ieG~~gsGKsT~~ 20 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQI 20 (205)
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3578999999999999964
No 414
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=78.37 E-value=1.4 Score=47.53 Aligned_cols=17 Identities=35% Similarity=0.796 Sum_probs=14.6
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
+.++|.||+||||||.+
T Consensus 2 ~~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLL 18 (179)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57899999999999843
No 415
>KOG0741|consensus
Probab=78.20 E-value=5.7 Score=49.28 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=18.1
Q ss_pred HHHHHHHh--cCCeEEEEcCCCcchhH
Q psy3476 45 QEIIDTVL--KERVVIIAGDTGCGKST 69 (1417)
Q Consensus 45 ~~il~~i~--~~~~~iI~a~TGsGKTt 69 (1417)
.++++.+- .-+-+++-||+|+|||.
T Consensus 245 p~vie~lGi~HVKGiLLyGPPGTGKTL 271 (744)
T KOG0741|consen 245 PEVIEQLGIKHVKGILLYGPPGTGKTL 271 (744)
T ss_pred HHHHHHcCccceeeEEEECCCCCChhH
Confidence 35566553 23568999999999995
No 416
>PRK14527 adenylate kinase; Provisional
Probab=78.18 E-value=2.1 Score=46.89 Aligned_cols=21 Identities=48% Similarity=0.732 Sum_probs=17.5
Q ss_pred cCCeEEEEcCCCcchhHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq 73 (1417)
+.++++|.|++||||||+.-.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~ 25 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAER 25 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 567899999999999986543
No 417
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=78.14 E-value=3.7 Score=49.42 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=20.1
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
.+.++.|.|+.|||||+...|+.+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~ 149 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVT 149 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHH
Confidence 4569999999999999877666543
No 418
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=78.05 E-value=1.3 Score=50.53 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=34.5
Q ss_pred CCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 318 SSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
-+-+++|+||.= -+++..-...++..+...+.+...-++.+|=+.+.+..|-
T Consensus 155 ~~P~iliLDEPt-a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~a 206 (235)
T COG1122 155 MGPEILLLDEPT-AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYA 206 (235)
T ss_pred cCCCEEEEcCCC-CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhC
Confidence 356899999997 5677666666676666665554333344566777777765
No 419
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=78.02 E-value=3.9 Score=48.44 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=21.5
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
..+.++.|+|++|||||+...|++..
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~ 118 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVN 118 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999877777654
No 420
>PRK10646 ADP-binding protein; Provisional
Probab=78.00 E-value=3.1 Score=44.22 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcchhHHHH
Q psy3476 44 KQEIIDTVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 44 q~~il~~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
-+.+-..+..++++++.|+-|+||||.+-
T Consensus 18 ~~~la~~l~~g~vi~L~GdLGaGKTtf~r 46 (153)
T PRK10646 18 GARVAKACDGATVIYLYGDLGAGKTTFSR 46 (153)
T ss_pred HHHHHHhCCCCcEEEEECCCCCCHHHHHH
Confidence 44566677788999999999999998543
No 421
>PRK05541 adenylylsulfate kinase; Provisional
Probab=78.00 E-value=1.2 Score=47.96 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=18.2
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
....+.+++++|+.||||||+.
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a 24 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIA 24 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHH
Confidence 3456789999999999999854
No 422
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=77.98 E-value=1.9 Score=53.18 Aligned_cols=41 Identities=32% Similarity=0.347 Sum_probs=31.1
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIA 92 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~a 92 (1417)
...++++|.|+||||||+.+++.+... ...+++++-|....
T Consensus 40 ~~~~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~ 82 (410)
T cd01127 40 AEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGF 82 (410)
T ss_pred hhhccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcch
Confidence 346789999999999999887766542 23578888888653
No 423
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=77.93 E-value=4.7 Score=54.60 Aligned_cols=78 Identities=10% Similarity=0.134 Sum_probs=64.9
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc-hhhccCCcCCeEEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN-IAETSITIDGIRFVV 503 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn-Iae~GIdIP~V~~VI 503 (1417)
+.+++|.+||+.-+.+.++.+++.... .++.+..++|+.+..++.++.+..++|+..|||+|. ++...+.+.++.+||
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 468999999999999999998875543 356788999999999999999999999999999997 444557777877665
No 424
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=77.91 E-value=1.3 Score=50.88 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=18.6
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+.+++++.|.||.||||||.+
T Consensus 25 i~~G~i~~iiGpNG~GKSTLL 45 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLL 45 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHH
Confidence 457899999999999999964
No 425
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=77.87 E-value=1.8 Score=49.18 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+..+..++|.|++||||||...+++..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999987777664
No 426
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=77.74 E-value=3.1 Score=45.01 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=32.2
Q ss_pred eEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
.++|.|++|||||++.-++..+.+. ++++..+-+..--.+.+|+...+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-~~~~iat~~~~~~e~~~ri~~h~~~ 52 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-QVLYIATAQPFDDEMAARIAHHRQR 52 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-CcEeCcCCCCChHHHHHHHHHHHhc
Confidence 5799999999999998887766443 3333333222334566777665543
No 427
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=77.67 E-value=1.8 Score=49.90 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=24.6
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHHHc
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLVQA 78 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~ile~ 78 (1417)
+..+.+++|.|++|||||+...||+++.
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~ 47 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEG 47 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHH
Confidence 4567899999999999999999998864
No 428
>PRK07261 topology modulation protein; Provisional
Probab=77.60 E-value=2.1 Score=46.15 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=13.2
Q ss_pred eEEEEcCCCcchhHH
Q psy3476 56 VVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ 70 (1417)
.++|+|++||||||.
T Consensus 2 ri~i~G~~GsGKSTl 16 (171)
T PRK07261 2 KIAIIGYSGSGKSTL 16 (171)
T ss_pred EEEEEcCCCCCHHHH
Confidence 478999999999984
No 429
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=77.31 E-value=2.9 Score=50.30 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=21.8
Q ss_pred HHHHHH-HHhcCCeEEEEcCCCcchhHHHH
Q psy3476 44 KQEIID-TVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 44 q~~il~-~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
+.+++. .+..+.+++|+|+|||||||.+-
T Consensus 167 ~~~~L~~~v~~~~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAARLAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCHHHHHH
Confidence 334443 45677899999999999999653
No 430
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=77.10 E-value=23 Score=42.22 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=29.7
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEcc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSA 359 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSA 359 (1417)
+....++++|||++| .++..-...++|.+..-+ +..+|+.+.
T Consensus 120 p~~~~~kVvII~~ae--~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 120 PLEAPRKVVVIEDAE--TMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cccCCceEEEEEchh--hcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 556789999999999 345556677888776544 665666554
No 431
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=76.90 E-value=2.5 Score=45.62 Aligned_cols=18 Identities=39% Similarity=0.719 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
-++++|.|+.||||||++
T Consensus 3 ~~ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQC 20 (188)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357899999999999854
No 432
>PRK14531 adenylate kinase; Provisional
Probab=76.70 E-value=2.5 Score=46.06 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=14.4
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
+.+++.|++||||||+.
T Consensus 3 ~~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQA 19 (183)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35799999999999864
No 433
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=76.65 E-value=2.4 Score=53.75 Aligned_cols=18 Identities=39% Similarity=1.099 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
.++++++||+||||||.|
T Consensus 45 ~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTV 62 (519)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 458999999999999744
No 434
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=76.65 E-value=1.8 Score=48.15 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=16.0
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+.++.|+|++||||||.+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVA 23 (207)
T ss_pred CeEEEEEECCCCCCHHHHH
Confidence 4568889999999999843
No 435
>PRK04328 hypothetical protein; Provisional
Probab=76.61 E-value=2 Score=49.38 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=23.1
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHHc
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQA 78 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile~ 78 (1417)
.+.+++|.|++|||||+...||+.+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~ 47 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG 47 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999988763
No 436
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=76.43 E-value=1.9 Score=49.69 Aligned_cols=31 Identities=26% Similarity=0.539 Sum_probs=24.7
Q ss_pred HHHHHhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
++.-+..+.+++|.|+||+|||+.+.|++..
T Consensus 23 ~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 23 LTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3345667889999999999999977776654
No 437
>PRK08356 hypothetical protein; Provisional
Probab=76.40 E-value=2.4 Score=46.66 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=15.9
Q ss_pred CeEEEEcCCCcchhHHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQY 74 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~ 74 (1417)
.+++|+||+||||||+.-..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 36789999999999976443
No 438
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=76.33 E-value=2.4 Score=46.25 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=14.0
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
.++|.|++|||||||.
T Consensus 2 riiilG~pGaGK~T~A 17 (178)
T COG0563 2 RILILGPPGAGKSTLA 17 (178)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4799999999999964
No 439
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=76.22 E-value=9.4 Score=47.78 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=57.9
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc-----hhh-ccCCcCC
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN-----IAE-TSITIDG 498 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn-----Iae-~GIdIP~ 498 (1417)
...+||.+||++-+.++++.++.+.....++.+..++|+.+...+...+. +...|+|+|+ .+. ..+++.+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~ 147 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDA 147 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHH
Confidence 34799999999999999998887665445788999999999888766554 3468999994 333 3567788
Q ss_pred eEEEE
Q psy3476 499 IRFVV 503 (1417)
Q Consensus 499 V~~VI 503 (1417)
+.+||
T Consensus 148 l~~lV 152 (460)
T PRK11776 148 LNTLV 152 (460)
T ss_pred CCEEE
Confidence 87766
No 440
>KOG0347|consensus
Probab=76.13 E-value=4.6 Score=50.15 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=49.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc
Q psy3476 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488 (1417)
Q Consensus 428 iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn 488 (1417)
.|||.||++-+..+.+.|....+ ..++.+..+.|||+...|++++.. ...|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~-~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAE-KTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhcc-ccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 79999999999999999987654 478999999999999999999987 347999997
No 441
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=76.06 E-value=3.3 Score=44.29 Aligned_cols=17 Identities=41% Similarity=0.608 Sum_probs=14.0
Q ss_pred eEEEEcCCCcchhHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ip 72 (1417)
++.|+|+.||||||..-
T Consensus 2 ~ItIsG~pGsG~TTva~ 18 (179)
T COG1102 2 VITISGLPGSGKTTVAR 18 (179)
T ss_pred EEEeccCCCCChhHHHH
Confidence 46899999999998543
No 442
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=75.85 E-value=2.1 Score=48.16 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=22.0
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+..+..++|.|++|||||+...+++.+
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHH
Confidence 446789999999999999977776643
No 443
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=75.70 E-value=2.3 Score=50.38 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=15.3
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
..+++|+||||||||+..
T Consensus 4 ~~~i~i~GptgsGKt~la 21 (307)
T PRK00091 4 PKVIVIVGPTASGKTALA 21 (307)
T ss_pred ceEEEEECCCCcCHHHHH
Confidence 468999999999999743
No 444
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=75.64 E-value=2 Score=53.36 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.3
Q ss_pred HhcCCeEEEEcCCCcchhHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
+..++++.|+||.||||||.+-
T Consensus 29 i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 29 LPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred ecCCCEEEEECCCCCCHHHHHh
Confidence 4578999999999999999766
No 445
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=75.55 E-value=3 Score=48.68 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=26.6
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
-..|.++|+ .|......|..-.+ ..+.-+.|+-++|--+..-.++.|.
T Consensus 233 CTgy~VfVV--LHNmnPR~d~gGNI----~~LKiqAK~HIiSp~~~p~QlsRFi 280 (369)
T PF02456_consen 233 CTGYYVFVV--LHNMNPRRDIGGNI----ANLKIQAKCHIISPKMHPSQLSRFI 280 (369)
T ss_pred CceeEEEEE--eccCCcccccCCCc----cchhhhceeeeecCCCCHHHHHHHH
Confidence 356666655 56444444431111 1112245777888888877777776
No 446
>KOG1002|consensus
Probab=75.54 E-value=12 Score=45.91 Aligned_cols=134 Identities=19% Similarity=0.240 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHhcCCe-----EEEEcCCCcchhHHHHHHHHHcCC-CcEEEecchHHHHHHHHHHHHHHHccccCCe
Q psy3476 38 LPVAQYKQEIIDTVLKERV-----VIIAGDTGCGKSTQIPQYLVQAGF-QRIACTQPRRIACISLSKRVAYETLSQYSNL 111 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~-----~iI~a~TGsGKTt~ipq~ile~~~-~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~ 111 (1417)
+|+-.+|.|-+..+..... -|+.-+.|-|||.|.+..++..-- ..-++..|. +|..|--..++.... |+.
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~ra~tLVvaP~-VAlmQW~nEI~~~T~---gsl 258 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDRAPTLVVAPT-VALMQWKNEIERHTS---GSL 258 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccccCCeeEEccH-HHHHHHHHHHHHhcc---Cce
Q ss_pred EEEEEeecccccC-----CccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhh
Q psy3476 112 VGYQIRFEKHRRE-----KTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKM 186 (1417)
Q Consensus 112 vGy~ir~e~~~~~-----~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (1417)
--|.-.+-++... +-.++..|..++-......
T Consensus 259 kv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~------------------------------------------- 295 (791)
T KOG1002|consen 259 KVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQ------------------------------------------- 295 (791)
T ss_pred EEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhc-------------------------------------------
Q ss_pred hccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhh
Q psy3476 187 LKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHE 247 (1417)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~ 247 (1417)
..+-.++++.+.+--+.|.-+ |--||+||+|.
T Consensus 296 -----------------~~GfrrKngv~ke~SlLHsi~------------~~RiIlDEAH~ 327 (791)
T KOG1002|consen 296 -----------------DYGFRRKNGVDKEKSLLHSIK------------FYRIILDEAHN 327 (791)
T ss_pred -----------------cccccccCCcccccchhhhce------------eeeeehhhhcc
No 447
>PF13871 Helicase_C_4: Helicase_C-like
Probab=75.53 E-value=9 Score=44.70 Aligned_cols=121 Identities=19% Similarity=0.195 Sum_probs=76.6
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC--CCeEEE
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG--PGVCYR 549 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy~ 549 (1417)
..+.|.+|+..|+|-|..+.+||.+-+-.-+-| -.....-..+-|.|...+.|..||+-|.+ ..-.|+
T Consensus 53 e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~n----------qr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~ 122 (278)
T PF13871_consen 53 EKQAFMDGEKDVAIISDAGSTGISLHADRRVKN----------QRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYR 122 (278)
T ss_pred HHHHHhCCCceEEEEecccccccchhccccCCC----------CCceEEEEeeCCCCHHHHHHHhccccccccccCCEEE
Confidence 345789999999999999999999876555544 11222223445778889999999999998 333444
Q ss_pred ecCHH-HHHHhhccCCCcccccChHHHHHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhcc
Q psy3476 550 LYSEE-QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLS 628 (1417)
Q Consensus 550 L~t~~-~~~~l~~~~~pEI~r~~L~~~lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls 628 (1417)
+...+ -.+. -. ....-..|..+||++...+=|.-+...+
T Consensus 123 ~l~t~~~gE~----------------Rf------------------------as~va~rL~sLgAlt~gdr~~~~~~~~~ 162 (278)
T PF13871_consen 123 FLVTDLPGER----------------RF------------------------ASTVARRLESLGALTRGDRRAGGALDLS 162 (278)
T ss_pred EeecCCHHHH----------------HH------------------------HHHHHHHHhhccccccCccccccccccc
Confidence 33221 1110 00 1122356777888876554443335667
Q ss_pred CCCCChhhHHHHHh
Q psy3476 629 DLPVDIPLGKMLVF 642 (1417)
Q Consensus 629 ~lpldp~lak~Ll~ 642 (1417)
.+-++-.+|+.-+.
T Consensus 163 ~~n~~~~yg~~aL~ 176 (278)
T PF13871_consen 163 EFNLDNKYGRKALR 176 (278)
T ss_pred ccccchHHHHHHHH
Confidence 78888888876543
No 448
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=75.41 E-value=3.4 Score=44.80 Aligned_cols=32 Identities=38% Similarity=0.474 Sum_probs=22.5
Q ss_pred CeEEEEcCCCcchhHHHHHHH-HHcCCCcEEEe
Q psy3476 55 RVVIIAGDTGCGKSTQIPQYL-VQAGFQRIACT 86 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~i-le~~~~~i~~t 86 (1417)
.+++|+|--||||||.+-+.+ ......++++.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI 33 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVI 33 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEE
Confidence 368999999999999887777 44444454443
No 449
>PRK14738 gmk guanylate kinase; Provisional
Probab=75.35 E-value=2.2 Score=47.41 Aligned_cols=20 Identities=35% Similarity=0.674 Sum_probs=16.8
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+..++|+||.||||||++-
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~ 31 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLA 31 (206)
T ss_pred CCeEEEEECcCCCCHHHHHH
Confidence 46788999999999998553
No 450
>PRK13973 thymidylate kinase; Provisional
Probab=75.31 E-value=3.2 Score=46.42 Aligned_cols=18 Identities=50% Similarity=0.785 Sum_probs=16.1
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+..+++.|.-|||||||+
T Consensus 3 g~~IviEG~dGsGKtTq~ 20 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQI 20 (213)
T ss_pred ceEEEEEcCCCCCHHHHH
Confidence 678899999999999974
No 451
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=75.23 E-value=3.8 Score=48.62 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCC--eEEEEcCCCcchhHHH
Q psy3476 44 KQEIIDTVLKER--VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 44 q~~il~~i~~~~--~~iI~a~TGsGKTt~i 71 (1417)
.+.+.+.+..+. .+++.||+|+|||+.+
T Consensus 24 ~~~L~~~~~~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 24 VERLSRAVDSPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 344455555665 7999999999999743
No 452
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=75.15 E-value=1.8 Score=47.29 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.6
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..++++.|.|+.||||||.+
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl 35 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLL 35 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 467899999999999999965
No 453
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=75.15 E-value=2.1 Score=54.08 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=23.8
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHHc
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQA 78 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile~ 78 (1417)
-.+..++|.|++|||||+...||+++.
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g 45 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNG 45 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998863
No 454
>COG3910 Predicted ATPase [General function prediction only]
Probab=75.11 E-value=3 Score=45.58 Aligned_cols=40 Identities=30% Similarity=0.511 Sum_probs=30.2
Q ss_pred HHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHH
Q psy3476 31 IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 31 ~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
..+.--+||+..+-++-++ ..-++++|+|+.||||||.+-
T Consensus 16 ~~eYp~slPa~r~l~~~Le--F~apIT~i~GENGsGKSTLLE 55 (233)
T COG3910 16 FEEYPFSLPAFRHLEERLE--FRAPITFITGENGSGKSTLLE 55 (233)
T ss_pred hhhCcccchHHHhhhhhcc--ccCceEEEEcCCCccHHHHHH
Confidence 3445578898888877332 467899999999999999543
No 455
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=74.82 E-value=4.2 Score=48.58 Aligned_cols=54 Identities=20% Similarity=0.366 Sum_probs=41.8
Q ss_pred cCCCcHHHHHHHHHHHhcCC--eEEEEcCCCcchhHHHHHHHHH-----cCCCcEEEecch
Q psy3476 36 NSLPVAQYKQEIIDTVLKER--VVIIAGDTGCGKSTQIPQYLVQ-----AGFQRIACTQPR 89 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~--~~iI~a~TGsGKTt~ipq~ile-----~~~~~i~~tqPr 89 (1417)
.--|-..+|.-+++.+...+ .|.+.|.-|||||..+...-++ .-+.+|+++.|.
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~ 285 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPT 285 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCC
Confidence 44567788999999998765 7888999999999876554443 345789999887
No 456
>PLN02674 adenylate kinase
Probab=74.79 E-value=5.1 Score=45.94 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=17.1
Q ss_pred CeEEEEcCCCcchhHHHHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~il 76 (1417)
..++|.||+|||||||.-...-
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999997544333
No 457
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=74.65 E-value=2.1 Score=46.14 Aligned_cols=17 Identities=35% Similarity=0.731 Sum_probs=15.2
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
+++++++|+.||||||.
T Consensus 2 ~~~i~l~G~~gsGKst~ 18 (175)
T cd00227 2 GRIIILNGGSSAGKSSI 18 (175)
T ss_pred CCEEEEECCCCCCHHHH
Confidence 67899999999999983
No 458
>PRK07667 uridine kinase; Provisional
Probab=74.65 E-value=2.9 Score=46.02 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=17.9
Q ss_pred HHHHHHhcC----CeEEEEcCCCcchhHH
Q psy3476 46 EIIDTVLKE----RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 46 ~il~~i~~~----~~~iI~a~TGsGKTt~ 70 (1417)
+|++.+.+. -++-|+|++||||||.
T Consensus 5 ~~~~~~~~~~~~~~iIgI~G~~gsGKStl 33 (193)
T PRK07667 5 ELINIMKKHKENRFILGIDGLSRSGKTTF 33 (193)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHH
Confidence 445555432 3778999999999983
No 459
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=74.61 E-value=1.8 Score=49.34 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=19.0
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.|..+..+++.||.||||||..
T Consensus 23 ~I~~gef~vliGpSGsGKTTtL 44 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTL 44 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHH
Confidence 4568899999999999999964
No 460
>KOG0741|consensus
Probab=74.56 E-value=5.7 Score=49.33 Aligned_cols=45 Identities=20% Similarity=0.388 Sum_probs=35.3
Q ss_pred eEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rv 100 (1417)
.+++.||.|||||+.+.+......+.=|-+..|......+=..++
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc 584 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKC 584 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHH
Confidence 678999999999999999999999987877788765443333333
No 461
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=74.53 E-value=38 Score=40.42 Aligned_cols=50 Identities=30% Similarity=0.359 Sum_probs=33.9
Q ss_pred eEEEEcCCCcchhHHHH---HHHHHcCCCc-EEEecchHHHHHHHHHHHHHHHc
Q psy3476 56 VVIIAGDTGCGKSTQIP---QYLVQAGFQR-IACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ip---q~ile~~~~~-i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
+++++|-.|+||||.+. .++.+.|..- ++-.-+-|.+|+.-.+-+++..+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~g 194 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLG 194 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhC
Confidence 78889999999999754 4555666543 33344557777776666666543
No 462
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=74.52 E-value=2.7 Score=43.50 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhH
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt 69 (1417)
+...++++-.....+..++|.|++||||++
T Consensus 7 ~~~l~~~l~~~a~~~~pvli~GE~GtGK~~ 36 (138)
T PF14532_consen 7 MRRLRRQLERLAKSSSPVLITGEPGTGKSL 36 (138)
T ss_dssp HHHHHHHHHHHHCSSS-EEEECCTTSSHHH
T ss_pred HHHHHHHHHHHhCCCCcEEEEcCCCCCHHH
Confidence 344566677777788899999999999996
No 463
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=74.47 E-value=2.9 Score=48.39 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=14.0
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
+++++.||+|-||||
T Consensus 53 DHvLl~GPPGlGKTT 67 (332)
T COG2255 53 DHVLLFGPPGLGKTT 67 (332)
T ss_pred CeEEeeCCCCCcHHH
Confidence 589999999999997
No 464
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=74.41 E-value=3.6 Score=51.01 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcchhHHH
Q psy3476 43 YKQEIIDTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 43 ~q~~il~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+.++..+..++++++.|++|+|||+.+
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 45577888889999999999999999754
No 465
>PRK10689 transcription-repair coupling factor; Provisional
Probab=74.38 E-value=6.4 Score=54.60 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=62.8
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc-hhhccCCcCCeEEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN-IAETSITIDGIRFVV 503 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn-Iae~GIdIP~V~~VI 503 (1417)
+.+++|.+||+.-+.++++.+.+.... .++.+..++|+.+..++..+++..++|...|||+|. .+...+.+.++.+||
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 568999999999999999988764432 246788899999999999999988899999999996 444456667776655
No 466
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=74.31 E-value=1.9 Score=47.93 Aligned_cols=53 Identities=21% Similarity=0.208 Sum_probs=30.5
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
.+.+.+++++||.- ..++......+.+.+......-..|+++ |-+.+.+.++.
T Consensus 151 l~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~tiiiv-tH~~~~~~~~~ 203 (214)
T cd03292 151 IVNSPTILIADEPT-GNLDPDTTWEIMNLLKKINKAGTTVVVA-THAKELVDTTR 203 (214)
T ss_pred HHcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhC
Confidence 45678899999997 6677666655555554432222344443 33444444444
No 467
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=74.29 E-value=3.6 Score=44.87 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.9
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+..++|.|+.||||||+.
T Consensus 3 g~~IvieG~~GsGKsT~~ 20 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQA 20 (195)
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 568999999999999864
No 468
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=74.21 E-value=5.8 Score=52.68 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHH---HHHHc-CC--CcEEEecchHHHHHHHHHHHHHHH
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ---YLVQA-GF--QRIACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq---~ile~-~~--~~i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
.+.|.+++.. ....++|.|..|||||+.+.. ++++. +. .+|+++--++-||..+.+|+.+..
T Consensus 6 n~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 6 NPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 4567777764 345678999999999987543 44543 33 467777777788888888886654
No 469
>PRK08118 topology modulation protein; Reviewed
Probab=74.21 E-value=2.1 Score=46.14 Aligned_cols=14 Identities=50% Similarity=0.824 Sum_probs=12.8
Q ss_pred eEEEEcCCCcchhH
Q psy3476 56 VVIIAGDTGCGKST 69 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt 69 (1417)
-++|+|+.||||||
T Consensus 3 rI~I~G~~GsGKST 16 (167)
T PRK08118 3 KIILIGSGGSGKST 16 (167)
T ss_pred EEEEECCCCCCHHH
Confidence 47999999999997
No 470
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=74.17 E-value=2.9 Score=45.40 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=19.5
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
.+..++|.|++|+|||+.+.+++.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~ 54 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAA 54 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 688999999999999986555443
No 471
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=74.07 E-value=1.9 Score=48.08 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=27.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCC--CCcEEEEcc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA--EVKIILMSA 359 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~--~~qvIlmSA 359 (1417)
..+.+-+++++||.- ..++......+.+.+..... ..-+|+.|-
T Consensus 154 al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 199 (218)
T cd03255 154 ALANDPKIILADEPT-GNLDSETGKEVMELLRELNKEAGTTIVVVTH 199 (218)
T ss_pred HHccCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 345677899999998 67777666666665555433 333444443
No 472
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=73.97 E-value=1.9 Score=47.60 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=30.8
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
.+.+-+++++||.- ..++......+...+......-..|+++ |-+.+.+.++.
T Consensus 141 l~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~-sH~~~~~~~~~ 193 (205)
T cd03226 141 LLSGKDLLIFDEPT-SGLDYKNMERVGELIRELAAQGKAVIVI-THDYEFLAKVC 193 (205)
T ss_pred HHhCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCCCEEEEE-eCCHHHHHHhC
Confidence 45577899999998 6777766655555554432222344444 33444444444
No 473
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=73.93 E-value=2.6 Score=47.70 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.1
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
..+..++|.|++|||||+...|++++
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH
Confidence 35779999999999999988887765
No 474
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.93 E-value=1.9 Score=48.53 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=32.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCC-CcEEEEccCCCHHHHHHHh
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-VKIILMSATINIELFHTYF 370 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~-~qvIlmSATln~~~~~~~f 370 (1417)
..+.+-+++|+||-- ..++......+...+...... -..|+++ |-+.+.+.++.
T Consensus 154 al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tvii~-sH~~~~~~~~~ 208 (233)
T cd03258 154 ALANNPKVLLCDEAT-SALDPETTQSILALLRDINRELGLTIVLI-THEMEVVKRIC 208 (233)
T ss_pred HHhcCCCEEEecCCC-CcCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhC
Confidence 345678899999998 677776666665555544321 2334443 33455555555
No 475
>PRK14532 adenylate kinase; Provisional
Probab=73.83 E-value=3 Score=45.35 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.8
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
.+++.|++||||||+.
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 476
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=73.69 E-value=2.6 Score=47.47 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=22.0
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+..+.++.|.|++|||||+...+++..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 446789999999999999877776654
No 477
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=73.55 E-value=5.4 Score=48.00 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=31.7
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccC
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 360 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSAT 360 (1417)
+.-..++++|||++| .++..-...++|.+..-+++.-+|+.|.-
T Consensus 128 ~~~~~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 128 THRGGARVVVLYPAE--ALNVAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred CccCCceEEEEechh--hcCHHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 445678999999999 44556677888888765566666666544
No 478
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=73.49 E-value=2.8 Score=38.19 Aligned_cols=15 Identities=47% Similarity=0.842 Sum_probs=12.9
Q ss_pred eEEEEcCCCcchhHH
Q psy3476 56 VVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ 70 (1417)
++.|+|+.||||||+
T Consensus 1 ~i~i~G~~gsGKst~ 15 (69)
T cd02019 1 IIAITGGSGSGKSTV 15 (69)
T ss_pred CEEEECCCCCCHHHH
Confidence 367899999999984
No 479
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=73.37 E-value=2 Score=47.41 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=26.6
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCC-CCcEEEEcc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-EVKIILMSA 359 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~-~~qvIlmSA 359 (1417)
.+.+-+++|+||.- ..++......+.+.+..... ..-+|+.|-
T Consensus 149 l~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 192 (206)
T TIGR03608 149 ILKDPPLILADEPT-GSLDPKNRDEVLDLLLELNDEGKTIIIVTH 192 (206)
T ss_pred HHcCCCEEEEeCCc-CCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 45678999999998 66777666555555544322 333444443
No 480
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=73.32 E-value=2 Score=48.64 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=30.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCC-CcEEEEccCCCHHHHHHHh
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-VKIILMSATINIELFHTYF 370 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~-~qvIlmSATln~~~~~~~f 370 (1417)
..+.+-+++++||.- ..++......+...+...... -+.|+++ |-+.+.+.++.
T Consensus 159 al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiii~-tH~~~~~~~~~ 213 (243)
T TIGR02315 159 ALAQQPDLILADEPI-ASLDPKTSKQVMDYLKRINKEDGITVIIN-LHQVDLAKKYA 213 (243)
T ss_pred HHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhc
Confidence 345677899999998 667766655555555443221 2334443 33444444554
No 481
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=73.29 E-value=3.4 Score=49.76 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=30.9
Q ss_pred CCccEEEEecCcccccCcchHHHHHHHHhccC----CC---CcE-EEEccCCCHHHHHHHh
Q psy3476 318 SSYDVLVLDEIHERHLHGDFLLGVIKCLLHST----AE---VKI-ILMSATINIELFHTYF 370 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r----~~---~qv-IlmSATln~~~~~~~f 370 (1417)
.+=+++.++|+. ..+.+++..++..+.... .. ..+ .++=||.|.+++..+.
T Consensus 235 aNrGi~~f~Ei~--K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~ 293 (361)
T smart00763 235 ANRGILEFVEMF--KADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFK 293 (361)
T ss_pred ccCceEEEeehh--cCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhh
Confidence 355788999998 456677777777665432 10 000 1344666777776665
No 482
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=73.27 E-value=2 Score=48.04 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=31.2
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
.+.+-+++++||.- ..++......+.+.+......-..|+++ |-+.+.+.++.
T Consensus 147 l~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii~-sH~~~~~~~~~ 199 (222)
T cd03224 147 LMSRPKLLLLDEPS-EGLAPKIVEEIFEAIRELRDEGVTILLV-EQNARFALEIA 199 (222)
T ss_pred HhcCCCEEEECCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEE-eCCHHHHHHhc
Confidence 45678999999997 6777766666655554433222344443 33445555554
No 483
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=73.26 E-value=4.5 Score=46.83 Aligned_cols=33 Identities=36% Similarity=0.423 Sum_probs=24.8
Q ss_pred HHHHHHHhc----CCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 45 QEIIDTVLK----ERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 45 ~~il~~i~~----~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+++.+.+.. .+++.|.|..|+|||+.+.++..+
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc
Confidence 455566655 569999999999999977666543
No 484
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=73.24 E-value=2.6 Score=45.59 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=16.0
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
...+++|.||+|+||||.+
T Consensus 18 ~~g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp -SEEEEEEESTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4568999999999999964
No 485
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=73.21 E-value=2.1 Score=47.60 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=19.4
Q ss_pred HHhcCCeEEEEcCCCcchhHHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+..++++.|.||.||||||.+-
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~ 43 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLK 43 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHH
Confidence 34688999999999999999643
No 486
>PRK05480 uridine/cytidine kinase; Provisional
Probab=73.17 E-value=2.2 Score=47.41 Aligned_cols=18 Identities=44% Similarity=0.660 Sum_probs=15.4
Q ss_pred cCCeEEEEcCCCcchhHH
Q psy3476 53 KERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ 70 (1417)
+..++.|+|++||||||.
T Consensus 5 ~~~iI~I~G~sGsGKTTl 22 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTV 22 (209)
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 455889999999999984
No 487
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=73.15 E-value=2.1 Score=46.99 Aligned_cols=21 Identities=38% Similarity=0.773 Sum_probs=18.3
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..++.+.|.|+.||||||.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl 43 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLL 43 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHH
Confidence 457889999999999999954
No 488
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.12 E-value=2.1 Score=47.46 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=31.4
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
.+.+-+++++||-- ..++......+.+.+......-..|+++ |-+.+.+.++.
T Consensus 143 l~~~p~~lllDEP~-~~LD~~~~~~~~~~l~~~~~~~~tii~~-sH~~~~~~~~~ 195 (210)
T cd03269 143 VIHDPELLILDEPF-SGLDPVNVELLKDVIRELARAGKTVILS-THQMELVEELC 195 (210)
T ss_pred HhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEE-CCCHHHHHHhh
Confidence 45677899999998 6777766666665555433222344443 33545444444
No 489
>PRK06547 hypothetical protein; Provisional
Probab=73.12 E-value=5.3 Score=43.33 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=16.8
Q ss_pred HHHHHhcC--CeEEEEcCCCcchhHHH
Q psy3476 47 IIDTVLKE--RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 47 il~~i~~~--~~~iI~a~TGsGKTt~i 71 (1417)
+...+..+ .+++|.|++||||||..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 33444433 36677899999999843
No 490
>PRK06762 hypothetical protein; Provisional
Probab=73.12 E-value=3.8 Score=43.53 Aligned_cols=19 Identities=42% Similarity=0.742 Sum_probs=15.7
Q ss_pred CeEEEEcCCCcchhHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq 73 (1417)
.+++|+|+.||||||..-.
T Consensus 3 ~li~i~G~~GsGKST~A~~ 21 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQ 21 (166)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4789999999999996543
No 491
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=73.11 E-value=2 Score=47.57 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=31.3
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
.+.+-+++|+||.- ..++......+...+......-..|+++ |-+.+.+..+.
T Consensus 149 l~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~tvi~~-sH~~~~~~~~~ 201 (211)
T cd03225 149 LAMDPDILLLDEPT-AGLDPAGRRELLELLKKLKAEGKTIIIV-THDLDLLLELA 201 (211)
T ss_pred HhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhC
Confidence 45677899999997 6777766666666555443222344443 23444444444
No 492
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=72.95 E-value=2 Score=46.77 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.4
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+..+.|.||.||||||.+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl 42 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAV 42 (177)
T ss_pred EECCCCEEEEECCCCChHHHHH
Confidence 5578999999999999999954
No 493
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=72.84 E-value=4.2 Score=44.00 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=14.0
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
.++|.|+.||||||++
T Consensus 2 ~I~ieG~~GsGKtT~~ 17 (200)
T cd01672 2 FIVFEGIDGAGKTTLI 17 (200)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999854
No 494
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=72.71 E-value=2.2 Score=47.75 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=18.5
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..++++.|.||.||||||.+
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLl 30 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLT 30 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 457899999999999999965
No 495
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=72.69 E-value=4.8 Score=49.74 Aligned_cols=48 Identities=27% Similarity=0.506 Sum_probs=30.3
Q ss_pred CeEEEEcCCCcchhHHHHH---HHHHcCCC-cEEEecchHHHHHHHHHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQ---YLVQAGFQ-RIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq---~ile~~~~-~i~~tqPrr~aa~~~a~rva~ 102 (1417)
.+++++|++||||||.+.. ++...+.. -++.+-|.|.+|..-.+..+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~ 152 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNAT 152 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhh
Confidence 4788999999999997543 34444542 345566777766544443333
No 496
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=72.60 E-value=2.8 Score=46.85 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=21.2
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+..++++.|.|++|||||+.+.+++..
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 345789999999999999866665543
No 497
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=72.47 E-value=3.6 Score=42.34 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=16.1
Q ss_pred eEEEEcCCCcchhHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~il 76 (1417)
+++|+|++||||||..-...-
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 468999999999996554443
No 498
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=72.47 E-value=6.9 Score=55.01 Aligned_cols=63 Identities=13% Similarity=0.277 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH---cCC--CcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ---AGF--QRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile---~~~--~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
..|++++. ..+.+++|.|.-|||||+.+..-++. .+. .+|+++-=++.||..+..|+.+.+..
T Consensus 4 ~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~ 71 (1232)
T TIGR02785 4 DEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQK 71 (1232)
T ss_pred HHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHH
Confidence 45777776 35778999999999999876554433 232 46888888889999999888876643
No 499
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=72.47 E-value=3.5 Score=48.86 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=41.2
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHH----HHHHHcCCCcEEEecc
Q psy3476 37 SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP----QYLVQAGFQRIACTQP 88 (1417)
Q Consensus 37 ~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ip----q~ile~~~~~i~~tqP 88 (1417)
-.|...-|..-++++.+++.+.-.||-|+|||.... +.+......+|+.|.|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 356678899999999999999999999999996432 3333334478999999
No 500
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=72.38 E-value=2.3 Score=47.31 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=31.5
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
.+.+-+++|+||.- ..++......+.+.+......-+.|+++ |-+.+.+..+.
T Consensus 152 l~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~-tH~~~~~~~~~ 204 (214)
T TIGR02673 152 IVNSPPLLLADEPT-GNLDPDLSERILDLLKRLNKRGTTVIVA-THDLSLVDRVA 204 (214)
T ss_pred HhCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhc
Confidence 45678899999998 6777766666665555432222334443 33445555544
Done!