Query psy3476
Match_columns 1417
No_of_seqs 688 out of 3914
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 17:42:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 4.8E-81 1.6E-85 805.4 46.3 572 19-772 74-664 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 1.2E-50 4E-55 522.0 25.9 553 39-790 30-676 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 4.6E-48 1.6E-52 496.9 33.6 526 39-772 25-635 (702)
4 2zj8_A DNA helicase, putative 100.0 2.7E-46 9.3E-51 481.7 25.1 556 30-790 14-665 (720)
5 2xau_A PRE-mRNA-splicing facto 100.0 8.3E-42 2.9E-46 440.4 7.1 211 794-1004 415-636 (773)
6 3i4u_A ATP-dependent RNA helic 100.0 2.5E-37 8.6E-42 350.7 -1.4 151 855-1005 5-162 (270)
7 3eiq_A Eukaryotic initiation f 100.0 1.4E-34 4.7E-39 346.4 21.1 335 28-570 51-406 (414)
8 4f92_B U5 small nuclear ribonu 100.0 7.4E-34 2.5E-38 390.1 30.1 451 40-674 927-1463(1724)
9 3l9o_A ATP-dependent RNA helic 100.0 2.6E-34 9.1E-39 382.3 21.7 331 36-554 181-597 (1108)
10 4f92_B U5 small nuclear ribonu 100.0 5.1E-34 1.7E-38 391.7 23.5 366 295-679 183-637 (1724)
11 3pey_A ATP-dependent RNA helic 100.0 9.4E-33 3.2E-37 327.3 30.5 319 36-555 24-357 (395)
12 3fht_A ATP-dependent RNA helic 100.0 1.3E-32 4.4E-37 328.7 30.8 321 36-555 44-380 (412)
13 3o8b_A HCV NS3 protease/helica 100.0 2.8E-34 9.7E-39 359.8 14.8 302 30-555 208-515 (666)
14 2db3_A ATP-dependent RNA helic 100.0 3.7E-32 1.3E-36 330.1 29.8 306 39-554 78-407 (434)
15 4a4z_A Antiviral helicase SKI2 100.0 3.4E-33 1.2E-37 368.7 21.2 326 38-552 38-490 (997)
16 1s2m_A Putative ATP-dependent 100.0 5.1E-32 1.8E-36 323.2 28.2 311 39-559 43-370 (400)
17 2j0s_A ATP-dependent RNA helic 100.0 1.7E-32 5.9E-37 328.6 23.4 312 39-559 59-388 (410)
18 1hv8_A Putative ATP-dependent 100.0 1.1E-31 3.6E-36 315.1 28.5 314 34-559 23-350 (367)
19 2z83_A Helicase/nucleoside tri 100.0 6.3E-33 2.2E-37 339.3 17.1 295 44-554 11-313 (459)
20 2i4i_A ATP-dependent RNA helic 100.0 1.1E-31 3.7E-36 321.9 26.6 205 316-558 172-387 (417)
21 3fmp_B ATP-dependent RNA helic 100.0 1.4E-32 4.6E-37 337.5 18.6 321 36-555 111-447 (479)
22 1xti_A Probable ATP-dependent 100.0 5.2E-31 1.8E-35 312.9 29.9 310 39-556 30-359 (391)
23 2xgj_A ATP-dependent RNA helic 100.0 7.3E-31 2.5E-35 346.6 33.6 327 37-554 84-499 (1010)
24 2jlq_A Serine protease subunit 100.0 1.7E-32 5.9E-37 334.7 15.5 199 315-552 106-309 (451)
25 2z0m_A 337AA long hypothetical 100.0 1.3E-30 4.5E-35 302.5 25.9 302 38-557 15-325 (337)
26 3rc3_A ATP-dependent RNA helic 100.0 7.8E-31 2.7E-35 332.1 25.2 280 316-642 236-531 (677)
27 2whx_A Serine protease/ntpase/ 100.0 6.4E-32 2.2E-36 340.6 14.7 299 34-552 169-476 (618)
28 1fuu_A Yeast initiation factor 100.0 1.6E-31 5.4E-36 317.4 16.0 314 38-560 42-372 (394)
29 3i5x_A ATP-dependent RNA helic 100.0 5.3E-31 1.8E-35 329.6 19.8 213 316-558 223-453 (563)
30 3fho_A ATP-dependent RNA helic 100.0 1.1E-31 3.7E-36 332.4 13.3 336 40-572 142-492 (508)
31 2v1x_A ATP-dependent DNA helic 100.0 2.1E-30 7.3E-35 325.5 24.3 212 317-562 163-382 (591)
32 2ykg_A Probable ATP-dependent 100.0 1.7E-30 5.9E-35 332.9 23.9 151 412-582 385-554 (696)
33 3sqw_A ATP-dependent RNA helic 100.0 1.6E-30 5.5E-35 326.9 20.6 213 316-558 172-402 (579)
34 1oyw_A RECQ helicase, ATP-depe 100.0 2.9E-29 9.8E-34 311.6 22.7 204 318-559 138-348 (523)
35 1yks_A Genome polyprotein [con 100.0 2.2E-29 7.5E-34 306.3 20.0 200 315-552 95-297 (440)
36 2v6i_A RNA helicase; membrane, 100.0 3.3E-29 1.1E-33 304.0 19.7 197 315-550 89-287 (431)
37 3tbk_A RIG-I helicase domain; 100.0 9.2E-29 3.1E-33 306.7 23.5 116 423-557 387-510 (555)
38 3oiy_A Reverse gyrase helicase 100.0 6.2E-30 2.1E-34 307.7 12.3 192 316-554 136-365 (414)
39 4a2p_A RIG-I, retinoic acid in 100.0 6.9E-29 2.4E-33 308.4 21.8 116 423-557 388-511 (556)
40 1wp9_A ATP-dependent RNA helic 100.0 1.6E-28 5.3E-33 297.2 20.8 112 423-557 359-478 (494)
41 2wv9_A Flavivirin protease NS2 100.0 1.8E-28 6E-33 311.3 21.7 200 315-552 328-531 (673)
42 3i4u_A ATP-dependent RNA helic 100.0 6E-29 2E-33 282.1 11.8 182 587-774 5-187 (270)
43 4gl2_A Interferon-induced heli 100.0 5.4E-29 1.8E-33 319.3 9.8 108 425-551 400-516 (699)
44 4a2q_A RIG-I, retinoic acid in 99.9 3.8E-27 1.3E-31 306.8 22.2 116 423-557 629-752 (797)
45 1gm5_A RECG; helicase, replica 99.9 1.6E-27 5.5E-32 306.1 17.3 198 315-552 486-695 (780)
46 4a2w_A RIG-I, retinoic acid in 99.9 3E-26 1E-30 302.3 24.1 127 412-557 618-752 (936)
47 4ddu_A Reverse gyrase; topoiso 99.9 2.3E-26 8E-31 306.1 16.8 262 37-506 76-385 (1104)
48 2eyq_A TRCF, transcription-rep 99.9 2.1E-25 7E-30 298.7 25.6 198 315-554 721-922 (1151)
49 2oca_A DAR protein, ATP-depend 99.9 2.5E-25 8.4E-30 275.0 18.6 205 316-552 222-453 (510)
50 2fwr_A DNA repair protein RAD2 99.9 7.2E-26 2.5E-30 277.1 9.2 104 423-554 347-454 (472)
51 1tf5_A Preprotein translocase 99.9 9E-24 3.1E-28 267.1 23.0 106 425-555 432-546 (844)
52 1gku_B Reverse gyrase, TOP-RG; 99.9 2.8E-25 9.5E-30 295.7 9.0 73 425-508 275-352 (1054)
53 3llm_A ATP-dependent RNA helic 99.9 7E-24 2.4E-28 236.4 14.2 178 27-378 49-234 (235)
54 2fsf_A Preprotein translocase 99.9 4.6E-22 1.6E-26 250.9 23.1 168 352-555 377-584 (853)
55 3h1t_A Type I site-specific re 99.9 7.2E-23 2.5E-27 257.8 15.3 102 424-544 438-545 (590)
56 1nkt_A Preprotein translocase 99.9 5.9E-22 2E-26 250.0 22.8 119 410-555 447-618 (922)
57 3eaq_A Heat resistant RNA depe 99.8 1.2E-22 4.3E-27 223.1 2.0 162 424-608 30-211 (212)
58 3i32_A Heat resistant RNA depe 99.8 6.4E-22 2.2E-26 228.5 1.5 166 425-613 28-213 (300)
59 3jux_A Protein translocase sub 99.8 3.9E-19 1.3E-23 220.1 21.8 169 351-555 409-588 (822)
60 3dmq_A RNA polymerase-associat 99.8 2.7E-19 9.3E-24 236.6 15.0 110 423-554 501-615 (968)
61 1c4o_A DNA nucleotide excision 99.8 2.8E-18 9.5E-23 218.4 21.0 126 411-556 427-552 (664)
62 1z63_A Helicase of the SNF2/RA 99.8 1.2E-18 4E-23 214.7 15.7 111 424-556 340-455 (500)
63 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 2.2E-18 7.6E-23 226.9 14.6 209 318-552 400-707 (1038)
64 2rb4_A ATP-dependent RNA helic 99.7 8.5E-18 2.9E-22 178.7 10.6 129 413-558 22-151 (175)
65 1fuk_A Eukaryotic initiation f 99.7 9.8E-18 3.3E-22 176.5 9.4 112 424-558 29-141 (165)
66 2hjv_A ATP-dependent RNA helic 99.7 8.9E-18 3E-22 176.6 8.9 113 424-559 34-147 (163)
67 1z3i_X Similar to RAD54-like; 99.7 6.1E-16 2.1E-20 196.7 21.8 110 424-556 415-530 (644)
68 2d7d_A Uvrabc system protein B 99.7 1.2E-16 4.1E-21 203.3 12.8 127 410-556 432-558 (661)
69 1t5i_A C_terminal domain of A 99.7 3.7E-17 1.3E-21 173.6 6.7 108 424-554 30-138 (172)
70 2jgn_A DBX, DDX3, ATP-dependen 99.7 6E-17 2.1E-21 174.1 7.1 111 424-557 45-156 (185)
71 2p6n_A ATP-dependent RNA helic 99.7 5.5E-17 1.9E-21 175.4 6.7 107 425-554 54-161 (191)
72 3mwy_W Chromo domain-containin 99.7 5.4E-16 1.8E-20 201.9 16.8 111 424-557 571-687 (800)
73 2yjt_D ATP-dependent RNA helic 99.4 1.5E-17 5.2E-22 176.0 0.0 119 418-559 23-142 (170)
74 3ber_A Probable ATP-dependent 99.6 3.2E-15 1.1E-19 168.0 17.6 111 29-140 55-176 (249)
75 1qde_A EIF4A, translation init 99.6 1.2E-14 4.2E-19 159.5 18.7 104 36-140 33-146 (224)
76 2pl3_A Probable ATP-dependent 99.6 1E-14 3.5E-19 161.7 17.4 110 30-140 38-161 (236)
77 3fe2_A Probable ATP-dependent 99.6 9E-15 3.1E-19 163.1 15.7 101 39-140 51-167 (242)
78 3iuy_A Probable ATP-dependent 99.6 1.7E-14 5.8E-19 159.1 17.5 100 39-140 42-158 (228)
79 2gxq_A Heat resistant RNA depe 99.6 1.7E-14 6E-19 156.0 16.8 70 35-104 19-96 (207)
80 3bor_A Human initiation factor 99.6 1.7E-14 5.7E-19 160.6 17.0 101 39-140 52-164 (237)
81 1q0u_A Bstdead; DEAD protein, 99.6 2.3E-14 7.8E-19 157.2 16.6 105 35-140 22-141 (219)
82 1vec_A ATP-dependent RNA helic 99.6 5.5E-14 1.9E-18 152.1 18.4 102 39-140 25-137 (206)
83 3fmo_B ATP-dependent RNA helic 99.6 3.9E-14 1.3E-18 163.6 17.8 106 36-141 111-226 (300)
84 2oxc_A Probable ATP-dependent 99.5 5.1E-14 1.7E-18 155.9 16.3 102 39-140 46-157 (230)
85 3dkp_A Probable ATP-dependent 99.5 9.7E-14 3.3E-18 154.7 17.4 103 38-141 50-165 (245)
86 3ly5_A ATP-dependent RNA helic 99.5 3.3E-14 1.1E-18 160.9 13.8 102 38-140 75-191 (262)
87 1t6n_A Probable ATP-dependent 99.5 1.6E-13 5.4E-18 150.4 17.8 64 40-103 37-105 (220)
88 1wrb_A DJVLGB; RNA helicase, D 99.5 3.8E-13 1.3E-17 150.7 16.8 101 39-140 45-165 (253)
89 2ipc_A Preprotein translocase 99.5 8.6E-13 3E-17 166.5 21.5 99 39-140 79-184 (997)
90 3b6e_A Interferon-induced heli 99.4 1.8E-12 6.2E-17 140.6 11.1 106 34-141 28-148 (216)
91 2va8_A SSO2462, SKI2-type heli 99.2 7.9E-13 2.7E-17 170.2 -1.5 147 794-940 377-551 (715)
92 1rif_A DAR protein, DNA helica 99.2 3.6E-11 1.2E-15 137.2 10.6 66 38-103 112-180 (282)
93 2p6r_A Afuhel308 helicase; pro 99.2 5E-12 1.7E-16 162.4 2.8 145 794-938 357-529 (702)
94 1z5z_A Helicase of the SNF2/RA 99.1 3.4E-11 1.2E-15 137.1 7.3 122 411-556 100-226 (271)
95 2vl7_A XPD; helicase, unknown 99.1 4.2E-10 1.4E-14 140.2 16.9 127 411-550 371-518 (540)
96 2fz4_A DNA repair protein RAD2 99.0 2.1E-09 7.1E-14 119.9 15.1 94 36-138 90-184 (237)
97 2zj8_A DNA helicase, putative 98.8 2.4E-10 8.4E-15 147.2 -0.8 146 794-939 356-535 (720)
98 3crv_A XPD/RAD3 related DNA he 98.8 5.2E-08 1.8E-12 121.7 18.7 127 410-550 379-528 (551)
99 3llm_A ATP-dependent RNA helic 97.9 7.9E-07 2.7E-11 98.5 -3.4 77 1105-1182 158-234 (235)
100 3eaq_A Heat resistant RNA depe 97.8 2.1E-06 7.2E-11 93.8 -1.1 82 795-876 110-211 (212)
101 3i32_A Heat resistant RNA depe 97.7 3E-06 1E-10 97.7 -2.2 87 795-881 107-213 (300)
102 1w36_D RECD, exodeoxyribonucle 97.3 0.00058 2E-08 86.2 11.2 62 41-102 151-218 (608)
103 3rc3_A ATP-dependent RNA helic 96.8 0.00034 1.1E-08 89.1 2.1 81 795-885 414-500 (677)
104 3upu_A ATP-dependent DNA helic 96.5 0.0063 2.1E-07 74.1 10.7 61 40-100 26-94 (459)
105 3e1s_A Exodeoxyribonuclease V, 96.5 0.0061 2.1E-07 76.3 10.8 62 38-99 188-251 (574)
106 4a15_A XPD helicase, ATP-depen 96.2 0.0024 8.3E-08 80.6 4.2 185 350-550 374-581 (620)
107 4b3f_X DNA-binding protein smu 95.6 0.015 5E-07 73.9 7.8 63 40-102 190-255 (646)
108 2gk6_A Regulator of nonsense t 95.1 0.029 9.8E-07 71.0 8.3 63 40-102 181-246 (624)
109 4a15_A XPD helicase, ATP-depen 95.1 0.027 9.2E-07 71.2 8.0 58 43-100 11-71 (620)
110 2xzl_A ATP-dependent helicase 94.8 0.039 1.3E-06 71.7 8.3 63 40-102 361-426 (802)
111 2o0j_A Terminase, DNA packagin 94.7 0.37 1.3E-05 57.1 15.7 100 1-102 127-230 (385)
112 3cpe_A Terminase, DNA packagin 94.4 0.39 1.3E-05 60.3 15.8 101 1-103 127-231 (592)
113 2wjy_A Regulator of nonsense t 94.3 0.06 2E-06 69.9 8.4 63 40-102 357-422 (800)
114 2v6i_A RNA helicase; membrane, 93.7 0.064 2.2E-06 64.6 6.4 51 934-984 378-431 (431)
115 3te6_A Regulatory protein SIR3 92.7 0.31 1.1E-05 56.3 9.9 43 319-362 132-174 (318)
116 1jr3_A DNA polymerase III subu 91.7 0.69 2.3E-05 53.6 11.4 41 316-358 116-156 (373)
117 3syl_A Protein CBBX; photosynt 91.6 0.78 2.7E-05 51.8 11.5 16 54-69 67-82 (309)
118 1a5t_A Delta prime, HOLB; zinc 91.6 0.92 3.1E-05 52.4 12.2 42 315-358 104-145 (334)
119 2z83_A Helicase/nucleoside tri 91.2 0.017 5.9E-07 70.2 -3.2 75 1107-1182 94-169 (459)
120 3lfu_A DNA helicase II; SF1 he 91.1 0.22 7.6E-06 62.7 6.8 64 40-105 10-79 (647)
121 2zpa_A Uncharacterized protein 90.0 0.32 1.1E-05 61.4 6.6 55 41-96 177-233 (671)
122 2ykg_A Probable ATP-dependent 89.9 0.061 2.1E-06 68.4 0.1 103 39-142 13-128 (696)
123 3foz_A TRNA delta(2)-isopenten 89.7 1 3.5E-05 51.7 10.0 53 125-177 100-154 (316)
124 2jlq_A Serine protease subunit 89.6 0.026 8.8E-07 68.5 -3.6 74 1107-1181 92-166 (451)
125 3b85_A Phosphate starvation-in 89.1 0.22 7.5E-06 53.9 3.8 33 39-71 7-39 (208)
126 3ec2_A DNA replication protein 88.1 0.38 1.3E-05 50.1 4.6 19 53-71 37-55 (180)
127 1kgd_A CASK, peripheral plasma 87.8 0.23 7.9E-06 52.1 2.8 19 53-71 4-22 (180)
128 3n70_A Transport activator; si 87.3 0.38 1.3E-05 48.5 3.9 25 45-69 15-39 (145)
129 3co5_A Putative two-component 87.0 0.41 1.4E-05 48.2 4.0 26 44-69 17-42 (143)
130 3tr0_A Guanylate kinase, GMP k 86.8 0.27 9.4E-06 52.0 2.7 21 51-71 4-24 (205)
131 3u4q_A ATP-dependent helicase/ 86.8 0.51 1.8E-05 64.3 5.9 67 38-106 9-83 (1232)
132 1uaa_A REP helicase, protein ( 86.7 0.54 1.8E-05 59.7 5.8 64 41-106 4-73 (673)
133 2b8t_A Thymidine kinase; deoxy 86.4 0.48 1.6E-05 51.9 4.4 25 53-77 11-35 (223)
134 3u61_B DNA polymerase accessor 86.4 1.7 6E-05 49.4 9.4 39 317-357 103-142 (324)
135 2j41_A Guanylate kinase; GMP, 86.1 0.32 1.1E-05 51.5 2.7 21 51-71 3-23 (207)
136 1znw_A Guanylate kinase, GMP k 85.9 0.33 1.1E-05 52.0 2.8 22 50-71 16-37 (207)
137 2oap_1 GSPE-2, type II secreti 85.8 0.41 1.4E-05 58.9 3.9 25 47-71 253-277 (511)
138 2eyu_A Twitching motility prot 85.7 0.32 1.1E-05 54.5 2.6 21 51-71 22-42 (261)
139 1pjr_A PCRA; DNA repair, DNA r 85.6 0.99 3.4E-05 57.9 7.4 65 40-106 12-82 (724)
140 1lvg_A Guanylate kinase, GMP k 85.5 0.32 1.1E-05 51.9 2.4 19 53-71 3-21 (198)
141 1z6g_A Guanylate kinase; struc 85.1 0.37 1.3E-05 52.3 2.7 22 50-71 19-40 (218)
142 2orw_A Thymidine kinase; TMTK, 85.0 0.69 2.4E-05 48.9 4.7 25 53-77 2-26 (184)
143 1jbk_A CLPB protein; beta barr 84.9 0.92 3.1E-05 46.5 5.5 28 44-71 31-60 (195)
144 1xx6_A Thymidine kinase; NESG, 84.8 0.66 2.3E-05 49.5 4.4 37 53-89 7-45 (191)
145 2gza_A Type IV secretion syste 84.6 0.62 2.1E-05 54.7 4.5 28 46-73 167-194 (361)
146 1zp6_A Hypothetical protein AT 84.6 0.29 9.9E-06 51.2 1.5 22 50-71 5-26 (191)
147 4gp7_A Metallophosphoesterase; 84.4 0.28 9.7E-06 51.0 1.3 22 52-73 7-28 (171)
148 3tau_A Guanylate kinase, GMP k 84.1 0.55 1.9E-05 50.4 3.5 20 52-71 6-25 (208)
149 2gno_A DNA polymerase III, gam 84.0 2.3 7.9E-05 48.7 8.8 42 315-358 78-119 (305)
150 2p65_A Hypothetical protein PF 83.7 0.77 2.6E-05 47.0 4.3 26 45-70 32-59 (187)
151 3umf_A Adenylate kinase; rossm 83.7 0.49 1.7E-05 51.6 2.9 23 50-72 25-47 (217)
152 3vaa_A Shikimate kinase, SK; s 83.4 0.75 2.6E-05 48.8 4.2 21 51-71 22-42 (199)
153 2pt7_A CAG-ALFA; ATPase, prote 83.4 0.58 2E-05 54.3 3.5 24 48-71 165-188 (330)
154 4a4z_A Antiviral helicase SKI2 83.3 0.16 5.4E-06 67.6 -1.5 85 795-880 462-560 (997)
155 3a00_A Guanylate kinase, GMP k 83.3 0.48 1.6E-05 49.8 2.5 18 54-71 1-18 (186)
156 1p9r_A General secretion pathw 83.1 0.84 2.9E-05 54.7 4.8 28 44-71 155-184 (418)
157 3ney_A 55 kDa erythrocyte memb 82.7 0.69 2.4E-05 49.7 3.5 20 53-72 18-37 (197)
158 3vkw_A Replicase large subunit 82.5 0.71 2.4E-05 55.6 3.8 45 53-100 160-204 (446)
159 3dm5_A SRP54, signal recogniti 82.2 2.6 9E-05 50.7 8.6 33 709-741 398-430 (443)
160 1njg_A DNA polymerase III subu 82.2 1.2 4.1E-05 47.3 5.2 40 318-359 125-164 (250)
161 2w58_A DNAI, primosome compone 82.0 1.2 4.2E-05 46.9 5.2 16 55-70 55-70 (202)
162 3jvv_A Twitching mobility prot 81.9 0.66 2.2E-05 54.4 3.2 20 52-71 121-140 (356)
163 3trf_A Shikimate kinase, SK; a 81.3 1 3.4E-05 46.8 4.1 18 54-71 5-22 (185)
164 3a8t_A Adenylate isopentenyltr 81.3 0.67 2.3E-05 53.9 2.9 17 53-69 39-55 (339)
165 3lw7_A Adenylate kinase relate 81.3 0.85 2.9E-05 46.3 3.4 19 55-73 2-20 (179)
166 3lnc_A Guanylate kinase, GMP k 81.3 0.41 1.4E-05 52.1 1.1 22 50-71 23-44 (231)
167 1kht_A Adenylate kinase; phosp 81.0 0.68 2.3E-05 48.1 2.7 18 54-71 3-20 (192)
168 2ewv_A Twitching motility prot 80.9 0.61 2.1E-05 55.0 2.5 21 51-71 133-153 (372)
169 2ehv_A Hypothetical protein PH 80.8 0.66 2.2E-05 50.5 2.5 26 50-75 26-51 (251)
170 3pxi_A Negative regulator of g 80.8 4.3 0.00015 52.3 10.5 27 319-347 579-605 (758)
171 2zts_A Putative uncharacterize 80.6 0.73 2.5E-05 50.0 2.8 27 51-77 27-53 (251)
172 3exa_A TRNA delta(2)-isopenten 80.4 0.76 2.6E-05 52.9 2.9 18 54-71 3-20 (322)
173 2chg_A Replication factor C sm 80.4 1.6 5.6E-05 45.7 5.4 27 44-70 26-54 (226)
174 2dr3_A UPF0273 protein PH0284; 80.4 0.74 2.5E-05 49.9 2.8 26 51-76 20-45 (247)
175 1s96_A Guanylate kinase, GMP k 80.3 0.76 2.6E-05 50.1 2.8 21 51-71 13-33 (219)
176 2qor_A Guanylate kinase; phosp 80.0 0.94 3.2E-05 48.2 3.4 19 52-70 10-28 (204)
177 2cvh_A DNA repair and recombin 79.5 0.81 2.8E-05 48.7 2.7 26 50-75 16-41 (220)
178 3tif_A Uncharacterized ABC tra 79.4 0.65 2.2E-05 51.1 1.9 21 51-71 28-48 (235)
179 4a74_A DNA repair and recombin 79.4 0.67 2.3E-05 49.7 2.0 26 50-75 21-46 (231)
180 2whx_A Serine protease/ntpase/ 79.3 0.15 5E-06 64.4 -3.8 62 1107-1169 259-321 (618)
181 4eun_A Thermoresistant glucoki 79.3 0.85 2.9E-05 48.4 2.8 19 52-70 27-45 (200)
182 1zd8_A GTP:AMP phosphotransfer 79.1 1.1 3.8E-05 48.4 3.7 21 52-72 5-25 (227)
183 2c95_A Adenylate kinase 1; tra 78.9 1.4 4.9E-05 45.9 4.3 21 51-71 6-26 (196)
184 2qmh_A HPR kinase/phosphorylas 78.9 0.91 3.1E-05 48.9 2.8 20 53-72 33-52 (205)
185 2w0m_A SSO2452; RECA, SSPF, un 78.9 0.83 2.9E-05 48.8 2.5 26 50-75 19-44 (235)
186 1kag_A SKI, shikimate kinase I 78.8 0.87 3E-05 46.7 2.6 18 54-71 4-21 (173)
187 4tmk_A Protein (thymidylate ki 78.6 1.8 6.2E-05 46.9 5.1 19 53-71 2-20 (213)
188 3lda_A DNA repair protein RAD5 78.6 1.6 5.3E-05 52.1 4.9 25 53-77 177-201 (400)
189 3sr0_A Adenylate kinase; phosp 78.4 1.1 3.8E-05 48.4 3.3 17 56-72 2-18 (206)
190 2ze6_A Isopentenyl transferase 78.4 1.2 4.2E-05 49.4 3.8 14 56-69 3-16 (253)
191 3bos_A Putative DNA replicatio 78.3 2.1 7.1E-05 45.8 5.5 18 53-70 51-68 (242)
192 1t6n_A Probable ATP-dependent 78.2 11 0.00037 40.0 11.1 76 425-503 82-163 (220)
193 1ly1_A Polynucleotide kinase; 78.0 0.89 3.1E-05 46.7 2.4 17 55-71 3-19 (181)
194 2v54_A DTMP kinase, thymidylat 77.8 1.5 5.3E-05 46.0 4.2 20 53-72 3-22 (204)
195 2oxc_A Probable ATP-dependent 77.8 8.2 0.00028 41.5 10.1 76 423-503 90-171 (230)
196 3c8u_A Fructokinase; YP_612366 77.7 0.82 2.8E-05 48.9 2.0 18 53-70 21-38 (208)
197 1gm5_A RECG; helicase, replica 77.7 3.1 0.00011 53.7 7.8 78 425-503 417-495 (780)
198 2cbz_A Multidrug resistance-as 77.6 0.8 2.7E-05 50.5 1.9 45 316-361 142-189 (237)
199 2i1q_A DNA repair and recombin 77.6 1.9 6.3E-05 49.5 5.1 26 52-77 96-121 (322)
200 3kl4_A SRP54, signal recogniti 77.5 7.1 0.00024 46.9 10.3 48 55-102 98-149 (433)
201 1qhx_A CPT, protein (chloramph 77.4 1 3.5E-05 46.3 2.7 17 54-70 3-19 (178)
202 3kb2_A SPBC2 prophage-derived 77.4 1.4 4.8E-05 44.8 3.6 16 56-71 3-18 (173)
203 1htw_A HI0065; nucleotide-bind 77.2 1.4 4.9E-05 45.4 3.6 20 52-71 31-50 (158)
204 1knq_A Gluconate kinase; ALFA/ 76.9 0.97 3.3E-05 46.5 2.3 18 53-70 7-24 (175)
205 2kjq_A DNAA-related protein; s 76.7 1.3 4.3E-05 45.2 3.0 18 53-70 35-52 (149)
206 1n0w_A DNA repair protein RAD5 76.7 1 3.5E-05 48.7 2.5 26 51-76 21-46 (243)
207 2pcj_A ABC transporter, lipopr 76.7 0.85 2.9E-05 49.8 1.8 50 315-366 154-203 (224)
208 3tlx_A Adenylate kinase 2; str 76.6 1.5 5.1E-05 48.3 3.8 20 53-72 28-47 (243)
209 2z0h_A DTMP kinase, thymidylat 76.6 1.9 6.3E-05 45.1 4.4 17 56-72 2-18 (197)
210 1vec_A ATP-dependent RNA helic 76.4 15 0.00051 38.3 11.5 76 424-503 70-151 (206)
211 2bjv_A PSP operon transcriptio 76.3 1.6 5.4E-05 48.3 3.9 20 50-69 25-44 (265)
212 3iij_A Coilin-interacting nucl 76.3 1.6 5.6E-05 45.1 3.8 21 53-73 10-30 (180)
213 3gfo_A Cobalt import ATP-bindi 76.3 0.87 3E-05 51.4 1.8 22 51-72 31-52 (275)
214 2bwj_A Adenylate kinase 5; pho 76.2 1.9 6.4E-05 45.1 4.3 21 51-71 9-29 (199)
215 3asz_A Uridine kinase; cytidin 76.2 1 3.5E-05 47.9 2.2 20 52-71 4-23 (211)
216 2rhm_A Putative kinase; P-loop 76.0 1.6 5.4E-05 45.5 3.6 20 53-72 4-23 (193)
217 2qgz_A Helicase loader, putati 75.9 2.9 9.8E-05 47.8 6.1 18 54-71 152-169 (308)
218 2bdt_A BH3686; alpha-beta prot 75.6 0.92 3.1E-05 47.4 1.6 17 55-71 3-19 (189)
219 3nh6_A ATP-binding cassette SU 75.6 0.86 2.9E-05 52.3 1.5 48 316-366 205-252 (306)
220 3cm0_A Adenylate kinase; ATP-b 75.5 1.3 4.5E-05 45.9 2.8 19 53-71 3-21 (186)
221 3uie_A Adenylyl-sulfate kinase 75.4 1.1 3.8E-05 47.5 2.2 19 52-70 23-41 (200)
222 3kta_A Chromosome segregation 75.3 1.3 4.3E-05 46.0 2.6 17 55-71 27-43 (182)
223 2j9r_A Thymidine kinase; TK1, 75.3 1.6 5.4E-05 47.5 3.4 37 53-89 27-65 (214)
224 2pze_A Cystic fibrosis transme 75.3 0.98 3.4E-05 49.4 1.8 48 316-366 145-193 (229)
225 1sgw_A Putative ABC transporte 75.2 0.97 3.3E-05 49.1 1.7 21 51-71 32-52 (214)
226 3oiy_A Reverse gyrase helicase 75.2 2.8 9.7E-05 49.3 6.0 63 425-489 64-126 (414)
227 3fb4_A Adenylate kinase; psych 75.1 1.8 6.1E-05 46.2 3.8 18 56-73 2-19 (216)
228 1b0u_A Histidine permease; ABC 75.1 1 3.5E-05 50.5 1.9 52 316-370 168-220 (262)
229 2ff7_A Alpha-hemolysin translo 75.1 1 3.4E-05 50.0 1.9 42 315-358 159-200 (247)
230 1cr0_A DNA primase/helicase; R 75.1 1.1 3.8E-05 50.6 2.2 29 47-75 28-56 (296)
231 1g6h_A High-affinity branched- 75.1 1 3.4E-05 50.3 1.9 21 51-71 30-50 (257)
232 1ex7_A Guanylate kinase; subst 75.0 1.7 5.8E-05 46.2 3.6 17 55-71 2-18 (186)
233 1nlf_A Regulatory protein REPA 75.0 1.2 4E-05 50.0 2.4 26 50-75 26-51 (279)
234 1nij_A Hypothetical protein YJ 75.0 1.6 5.6E-05 50.1 3.7 35 55-89 5-39 (318)
235 1nks_A Adenylate kinase; therm 74.9 1.2 4.1E-05 46.2 2.3 16 56-71 3-18 (194)
236 3hgt_A HDA1 complex subunit 3; 74.9 5.3 0.00018 46.0 7.8 110 424-557 124-240 (328)
237 1wp9_A ATP-dependent RNA helic 74.8 0.88 3E-05 53.9 1.4 67 37-104 7-76 (494)
238 1tev_A UMP-CMP kinase; ploop, 74.7 1.5 5.1E-05 45.5 3.0 18 54-71 3-20 (196)
239 2ghi_A Transport protein; mult 74.7 1.1 3.6E-05 50.3 1.9 41 316-358 170-210 (260)
240 3dl0_A Adenylate kinase; phosp 74.7 1.9 6.6E-05 46.0 4.0 18 56-73 2-19 (216)
241 1ji0_A ABC transporter; ATP bi 74.5 1.1 3.6E-05 49.5 1.9 53 315-370 153-206 (240)
242 2jaq_A Deoxyguanosine kinase; 74.5 1.3 4.3E-05 46.6 2.4 16 56-71 2-17 (205)
243 4g1u_C Hemin import ATP-bindin 74.4 1.1 3.6E-05 50.4 1.8 50 319-370 165-215 (266)
244 1mv5_A LMRA, multidrug resista 74.3 0.94 3.2E-05 50.0 1.4 21 51-71 25-45 (243)
245 2bbw_A Adenylate kinase 4, AK4 74.0 1.4 4.9E-05 48.3 2.8 20 53-72 26-45 (246)
246 2plr_A DTMP kinase, probable t 73.9 1.3 4.4E-05 46.8 2.2 18 54-71 4-21 (213)
247 2vp4_A Deoxynucleoside kinase; 73.8 1.3 4.3E-05 48.3 2.2 20 52-71 18-37 (230)
248 2qt1_A Nicotinamide riboside k 73.8 1.1 3.7E-05 47.7 1.6 23 49-71 16-38 (207)
249 2zu0_C Probable ATP-dependent 73.7 1.1 3.9E-05 50.1 1.9 41 316-357 179-219 (267)
250 3t61_A Gluconokinase; PSI-biol 73.7 2 7E-05 45.3 3.8 17 54-70 18-34 (202)
251 2d2e_A SUFC protein; ABC-ATPas 73.6 1.1 3.9E-05 49.6 1.9 41 317-358 159-200 (250)
252 1gvn_B Zeta; postsegregational 73.6 3.7 0.00013 46.4 6.1 20 54-73 33-52 (287)
253 2pez_A Bifunctional 3'-phospho 73.5 1.3 4.6E-05 45.8 2.2 19 53-71 4-22 (179)
254 1cke_A CK, MSSA, protein (cyti 73.4 1.5 5E-05 47.1 2.6 19 54-72 5-23 (227)
255 1f2t_A RAD50 ABC-ATPase; DNA d 73.4 1.4 4.6E-05 45.0 2.2 18 54-71 23-40 (149)
256 2olj_A Amino acid ABC transpor 73.3 1.2 4.1E-05 50.0 1.9 54 315-370 173-226 (263)
257 1vpl_A ABC transporter, ATP-bi 73.3 1.2 4.1E-05 49.8 1.9 54 315-370 160-213 (256)
258 2wwf_A Thymidilate kinase, put 73.2 1.5 5.2E-05 46.4 2.7 19 53-71 9-27 (212)
259 2ixe_A Antigen peptide transpo 73.1 1.2 4.2E-05 50.1 1.9 49 315-365 170-219 (271)
260 1pzn_A RAD51, DNA repair and r 73.0 2.4 8.1E-05 49.5 4.4 26 52-77 129-154 (349)
261 4edh_A DTMP kinase, thymidylat 73.0 2.4 8.3E-05 45.8 4.2 19 53-71 5-23 (213)
262 2yz2_A Putative ABC transporte 72.6 1.3 4.3E-05 49.7 1.9 45 315-360 152-197 (266)
263 1m7g_A Adenylylsulfate kinase; 72.6 1.7 5.9E-05 46.4 2.9 21 51-71 22-42 (211)
264 1ye8_A Protein THEP1, hypothet 72.6 1.6 5.3E-05 45.9 2.5 52 317-370 97-150 (178)
265 2ihy_A ABC transporter, ATP-bi 72.6 1.2 4.2E-05 50.3 1.8 21 51-71 44-64 (279)
266 1nn5_A Similar to deoxythymidy 72.5 1.6 5.5E-05 46.2 2.7 20 52-71 7-26 (215)
267 1rz3_A Hypothetical protein rb 72.5 2 6.9E-05 45.6 3.4 17 54-70 22-38 (201)
268 2r44_A Uncharacterized protein 72.5 2 6.9E-05 49.1 3.7 26 44-69 36-61 (331)
269 3hjn_A DTMP kinase, thymidylat 72.5 3 0.0001 44.5 4.7 34 56-89 2-38 (197)
270 1ofh_A ATP-dependent HSL prote 72.4 4.2 0.00014 45.5 6.2 18 53-70 49-66 (310)
271 2qen_A Walker-type ATPase; unk 72.4 3 0.0001 47.4 5.1 32 46-77 23-54 (350)
272 3tqc_A Pantothenate kinase; bi 72.4 2.3 7.8E-05 49.1 4.0 16 56-71 94-109 (321)
273 1y63_A LMAJ004144AAA protein; 72.3 2 6.8E-05 44.9 3.3 19 53-71 9-27 (184)
274 3b9q_A Chloroplast SRP recepto 72.3 1.2 4.1E-05 50.9 1.7 20 53-72 99-118 (302)
275 3h4m_A Proteasome-activating n 72.1 3.9 0.00013 45.5 5.8 19 52-70 49-67 (285)
276 1zak_A Adenylate kinase; ATP:A 72.0 2.2 7.5E-05 45.8 3.6 18 54-71 5-22 (222)
277 1aky_A Adenylate kinase; ATP:A 72.0 2.4 8.2E-05 45.5 3.9 18 54-71 4-21 (220)
278 3crm_A TRNA delta(2)-isopenten 71.9 2.1 7.1E-05 49.5 3.5 15 55-69 6-20 (323)
279 2v1u_A Cell division control p 71.9 2.7 9.1E-05 48.6 4.6 22 53-74 43-64 (387)
280 2qi9_C Vitamin B12 import ATP- 71.9 1.3 4.5E-05 49.2 1.8 47 322-370 154-200 (249)
281 2cdn_A Adenylate kinase; phosp 71.8 2.7 9.1E-05 44.3 4.2 17 55-71 21-37 (201)
282 1zuh_A Shikimate kinase; alpha 71.8 2.6 8.8E-05 43.1 3.9 18 54-71 7-24 (168)
283 2qby_B CDC6 homolog 3, cell di 71.8 4.3 0.00015 47.0 6.3 21 54-74 45-65 (384)
284 2nq2_C Hypothetical ABC transp 71.7 1.3 4.5E-05 49.3 1.8 53 316-370 143-196 (253)
285 1ukz_A Uridylate kinase; trans 71.7 2.3 8E-05 44.8 3.7 19 55-73 16-34 (203)
286 2yvu_A Probable adenylyl-sulfa 71.6 1.6 5.3E-05 45.6 2.2 19 53-71 12-30 (186)
287 3d3q_A TRNA delta(2)-isopenten 71.6 2.1 7.2E-05 49.8 3.5 15 55-69 8-22 (340)
288 1gtv_A TMK, thymidylate kinase 71.6 1.3 4.4E-05 47.0 1.6 16 56-71 2-17 (214)
289 1rj9_A FTSY, signal recognitio 71.5 1.7 5.8E-05 49.8 2.7 19 53-71 101-119 (304)
290 2qz4_A Paraplegin; AAA+, SPG7, 71.4 5.3 0.00018 43.6 6.6 18 53-70 38-55 (262)
291 2pbr_A DTMP kinase, thymidylat 71.3 3.1 0.00011 43.0 4.5 16 56-71 2-17 (195)
292 3bh0_A DNAB-like replicative h 71.3 1.7 5.8E-05 49.8 2.6 33 45-77 59-91 (315)
293 2v9p_A Replication protein E1; 71.2 2.1 7.1E-05 49.1 3.3 21 51-71 123-143 (305)
294 1e4v_A Adenylate kinase; trans 71.1 2.5 8.5E-05 45.2 3.7 18 56-73 2-19 (214)
295 1qf9_A UMP/CMP kinase, protein 71.0 2.3 8E-05 43.9 3.4 17 55-71 7-23 (194)
296 2i3b_A HCR-ntpase, human cance 70.8 1.8 6.2E-05 45.9 2.6 18 54-71 1-18 (189)
297 3v9p_A DTMP kinase, thymidylat 70.6 3 0.0001 45.7 4.3 21 51-71 22-42 (227)
298 2px0_A Flagellar biosynthesis 70.4 6.5 0.00022 44.7 7.2 19 53-71 104-122 (296)
299 1hv8_A Putative ATP-dependent 70.4 1.2 4.2E-05 50.9 1.2 60 423-488 72-131 (367)
300 2vli_A Antibiotic resistance p 70.4 2.6 8.9E-05 43.4 3.6 20 54-73 5-24 (183)
301 3eph_A TRNA isopentenyltransfe 70.4 1.9 6.6E-05 51.2 2.8 15 55-69 3-17 (409)
302 1sxj_C Activator 1 40 kDa subu 70.2 3.6 0.00012 47.4 5.1 26 46-71 36-63 (340)
303 2f1r_A Molybdopterin-guanine d 70.1 1.7 5.8E-05 45.5 2.1 17 55-71 3-19 (171)
304 2orv_A Thymidine kinase; TP4A 69.9 2.8 9.7E-05 46.1 3.8 37 53-89 18-56 (234)
305 3fvq_A Fe(3+) IONS import ATP- 69.9 1.5 5.3E-05 51.3 1.9 21 51-71 27-47 (359)
306 3eiq_A Eukaryotic initiation f 69.9 1.1 3.9E-05 52.4 0.8 61 424-488 107-167 (414)
307 3b9p_A CG5977-PA, isoform A; A 69.8 4.2 0.00014 45.6 5.4 17 54-70 54-70 (297)
308 1vma_A Cell division protein F 69.7 5.6 0.00019 45.5 6.5 41 54-94 104-148 (306)
309 4eaq_A DTMP kinase, thymidylat 69.7 1.8 6.1E-05 47.3 2.2 19 53-71 25-43 (229)
310 1e6c_A Shikimate kinase; phosp 69.7 2.7 9.2E-05 42.9 3.5 17 55-71 3-19 (173)
311 2jeo_A Uridine-cytidine kinase 69.7 1.7 5.9E-05 47.6 2.1 22 50-71 21-42 (245)
312 2bbs_A Cystic fibrosis transme 69.6 1.6 5.5E-05 49.7 1.9 48 316-366 174-222 (290)
313 4a2p_A RIG-I, retinoic acid in 69.3 1.4 4.8E-05 53.8 1.5 102 38-140 6-120 (556)
314 3im1_A Protein SNU246, PRE-mRN 69.1 4 0.00014 47.1 5.1 65 612-678 1-67 (328)
315 1in4_A RUVB, holliday junction 69.1 2.5 8.4E-05 48.8 3.3 16 55-70 52-67 (334)
316 2iyv_A Shikimate kinase, SK; t 69.0 3.2 0.00011 43.0 3.9 17 55-71 3-19 (184)
317 3pfi_A Holliday junction ATP-d 68.9 4.7 0.00016 46.1 5.7 16 55-70 56-71 (338)
318 3lv8_A DTMP kinase, thymidylat 68.9 4.2 0.00014 44.8 5.0 19 53-71 26-44 (236)
319 1e9r_A Conjugal transfer prote 68.8 2.1 7.2E-05 51.2 2.8 40 53-92 52-93 (437)
320 3cf0_A Transitional endoplasmi 68.7 5.3 0.00018 45.2 6.0 20 52-71 47-66 (301)
321 3hws_A ATP-dependent CLP prote 68.5 6.1 0.00021 45.9 6.6 18 53-70 50-67 (363)
322 3a4m_A L-seryl-tRNA(SEC) kinas 68.4 3.4 0.00012 45.8 4.3 18 54-71 4-21 (260)
323 1z47_A CYSA, putative ABC-tran 68.3 1.7 5.9E-05 50.8 1.9 54 315-370 159-213 (355)
324 1sxj_D Activator 1 41 kDa subu 68.3 3.2 0.00011 47.5 4.1 26 45-70 47-74 (353)
325 3rlf_A Maltose/maltodextrin im 68.3 1.8 6E-05 51.2 1.9 20 52-71 27-46 (381)
326 4e22_A Cytidylate kinase; P-lo 68.2 2.3 7.8E-05 47.0 2.7 20 52-71 25-44 (252)
327 3e70_C DPA, signal recognition 68.1 4.3 0.00015 46.9 5.1 20 53-72 128-147 (328)
328 2xb4_A Adenylate kinase; ATP-b 68.1 2.7 9.3E-05 45.4 3.2 17 56-72 2-18 (223)
329 1lv7_A FTSH; alpha/beta domain 68.0 5.7 0.00019 43.5 5.9 17 54-70 45-61 (257)
330 1fnn_A CDC6P, cell division co 68.0 4.3 0.00015 46.9 5.2 21 56-76 46-66 (389)
331 2yhs_A FTSY, cell division pro 67.9 21 0.00073 43.5 11.2 40 53-92 292-335 (503)
332 3e2i_A Thymidine kinase; Zn-bi 67.8 2.9 9.8E-05 45.6 3.3 38 52-89 26-65 (219)
333 4ag6_A VIRB4 ATPase, type IV s 67.8 3.5 0.00012 48.5 4.4 38 53-90 34-73 (392)
334 2onk_A Molybdate/tungstate ABC 67.7 1.8 6.2E-05 47.8 1.7 53 315-370 140-194 (240)
335 2wv9_A Flavivirin protease NS2 67.7 0.48 1.6E-05 60.3 -3.3 54 1116-1170 324-377 (673)
336 2pt5_A Shikimate kinase, SK; a 67.5 3.5 0.00012 41.9 3.8 16 56-71 2-17 (168)
337 2yyz_A Sugar ABC transporter, 67.4 1.9 6.5E-05 50.6 1.9 53 315-370 147-201 (359)
338 1vht_A Dephospho-COA kinase; s 67.4 2.1 7.2E-05 45.8 2.2 18 54-71 4-21 (218)
339 2it1_A 362AA long hypothetical 67.3 1.9 6.5E-05 50.7 1.9 53 315-370 147-201 (362)
340 2og2_A Putative signal recogni 67.3 1.8 6E-05 50.9 1.6 19 54-72 157-175 (359)
341 3aez_A Pantothenate kinase; tr 67.1 1.8 6.1E-05 49.7 1.6 21 51-71 87-107 (312)
342 3gd7_A Fusion complex of cysti 67.1 1.9 6.5E-05 51.2 1.9 21 51-71 44-64 (390)
343 3d31_A Sulfate/molybdate ABC t 67.1 1.7 5.9E-05 50.7 1.5 53 315-370 141-195 (348)
344 1ojl_A Transcriptional regulat 67.0 3.1 0.0001 47.5 3.6 18 52-69 23-40 (304)
345 3be4_A Adenylate kinase; malar 67.0 3.3 0.00011 44.4 3.7 19 54-72 5-23 (217)
346 1ak2_A Adenylate kinase isoenz 67.0 3.5 0.00012 44.8 3.9 19 53-71 15-33 (233)
347 1xjc_A MOBB protein homolog; s 66.8 3.1 0.0001 43.5 3.2 18 55-72 5-22 (169)
348 1yks_A Genome polyprotein [con 66.8 0.63 2.1E-05 56.1 -2.4 53 1116-1169 91-143 (440)
349 1d2n_A N-ethylmaleimide-sensit 66.8 4.2 0.00014 45.1 4.6 16 55-70 65-80 (272)
350 2if2_A Dephospho-COA kinase; a 66.8 2.4 8.2E-05 44.7 2.4 16 56-71 3-18 (204)
351 1hqc_A RUVB; extended AAA-ATPa 66.7 5.4 0.00018 45.1 5.5 17 54-70 38-54 (324)
352 3tmk_A Thymidylate kinase; pho 66.4 4.9 0.00017 43.6 4.9 20 53-72 4-23 (216)
353 2z43_A DNA repair and recombin 66.3 2.6 8.8E-05 48.5 2.8 26 52-77 105-130 (324)
354 1s2m_A Putative ATP-dependent 66.3 1.8 6.3E-05 50.4 1.6 75 424-503 88-168 (400)
355 3qf7_A RAD50; ABC-ATPase, ATPa 66.3 2.3 7.8E-05 49.9 2.4 17 55-71 24-40 (365)
356 1np6_A Molybdopterin-guanine d 66.2 3.2 0.00011 43.5 3.2 19 54-72 6-24 (174)
357 3auy_A DNA double-strand break 66.2 2.2 7.4E-05 50.1 2.1 18 54-71 25-42 (371)
358 1jjv_A Dephospho-COA kinase; P 66.2 2.4 8.4E-05 44.8 2.4 16 56-71 4-19 (206)
359 4hlc_A DTMP kinase, thymidylat 66.1 2.3 7.9E-05 45.7 2.1 18 54-71 2-19 (205)
360 3tbk_A RIG-I helicase domain; 66.0 1.7 5.9E-05 52.9 1.3 103 38-141 3-118 (555)
361 1uf9_A TT1252 protein; P-loop, 66.0 2.4 8.1E-05 44.5 2.2 18 55-72 9-26 (203)
362 2fna_A Conserved hypothetical 65.9 5.6 0.00019 45.1 5.6 25 51-76 28-52 (357)
363 1v43_A Sugar-binding transport 65.8 2.1 7.2E-05 50.5 1.9 53 315-370 155-209 (372)
364 1g29_1 MALK, maltose transport 65.8 2.1 7.1E-05 50.5 1.9 52 316-370 154-207 (372)
365 2pjz_A Hypothetical protein ST 65.8 2.1 7E-05 48.0 1.7 34 316-350 143-176 (263)
366 1fuk_A Eukaryotic initiation f 65.7 1.5 5.1E-05 45.0 0.5 31 795-825 109-140 (165)
367 3nbx_X ATPase RAVA; AAA+ ATPas 65.7 3.7 0.00013 50.3 4.1 26 44-69 31-56 (500)
368 1iqp_A RFCS; clamp loader, ext 65.4 4.8 0.00017 45.3 4.8 39 318-358 109-147 (327)
369 2vhj_A Ntpase P4, P4; non- hyd 65.4 2.7 9.1E-05 48.6 2.6 23 53-75 122-144 (331)
370 4fcw_A Chaperone protein CLPB; 65.4 2.8 9.7E-05 47.1 2.8 15 55-69 48-62 (311)
371 1ixz_A ATP-dependent metallopr 65.3 4.6 0.00016 44.2 4.4 17 55-71 50-66 (254)
372 1tq4_A IIGP1, interferon-induc 64.9 3.9 0.00013 48.8 4.0 27 46-72 61-87 (413)
373 1via_A Shikimate kinase; struc 64.6 3.9 0.00013 42.0 3.5 16 55-70 5-20 (175)
374 2zr9_A Protein RECA, recombina 64.5 2.9 9.9E-05 48.8 2.8 26 51-76 58-83 (349)
375 2qby_A CDC6 homolog 1, cell di 64.4 3.7 0.00013 47.2 3.7 18 54-71 45-62 (386)
376 2p5t_B PEZT; postsegregational 64.1 3.9 0.00013 45.1 3.6 18 53-70 31-48 (253)
377 1tf7_A KAIC; homohexamer, hexa 64.1 2.9 9.8E-05 51.5 2.8 27 50-76 35-61 (525)
378 1oxx_K GLCV, glucose, ABC tran 64.1 1.8 6.1E-05 50.7 0.8 53 315-370 154-208 (353)
379 3qks_A DNA double-strand break 64.1 2.7 9.2E-05 45.0 2.2 18 54-71 23-40 (203)
380 1w4r_A Thymidine kinase; type 64.0 3.7 0.00013 44.0 3.2 24 53-76 19-42 (195)
381 3o8b_A HCV NS3 protease/helica 64.0 0.69 2.3E-05 58.6 -2.9 65 1104-1169 299-363 (666)
382 2r6a_A DNAB helicase, replicat 64.0 2.8 9.7E-05 50.5 2.6 30 47-76 196-225 (454)
383 1odf_A YGR205W, hypothetical 3 63.8 2.7 9.2E-05 47.7 2.2 17 54-70 31-47 (290)
384 1xwi_A SKD1 protein; VPS4B, AA 63.8 8.2 0.00028 44.2 6.4 17 54-70 45-61 (322)
385 3d8b_A Fidgetin-like protein 1 63.7 6.3 0.00021 45.8 5.4 19 53-71 116-134 (357)
386 3uk6_A RUVB-like 2; hexameric 63.5 5.4 0.00019 46.0 4.9 16 55-70 71-86 (368)
387 2eyq_A TRCF, transcription-rep 63.5 11 0.00039 50.7 8.5 78 425-503 652-730 (1151)
388 3tui_C Methionine import ATP-b 63.5 2.5 8.5E-05 49.7 1.9 53 315-370 177-231 (366)
389 1xti_A Probable ATP-dependent 63.4 27 0.00093 40.0 10.9 77 424-503 75-157 (391)
390 3pvs_A Replication-associated 63.2 3.7 0.00012 49.6 3.4 23 47-69 41-65 (447)
391 1p5z_B DCK, deoxycytidine kina 63.1 2.9 9.8E-05 46.3 2.3 19 53-71 23-41 (263)
392 1v5w_A DMC1, meiotic recombina 62.6 3.1 0.00011 48.3 2.5 26 52-77 120-145 (343)
393 1l8q_A Chromosomal replication 62.6 3.8 0.00013 46.7 3.2 17 54-70 37-53 (324)
394 4a82_A Cystic fibrosis transme 62.4 2.6 8.9E-05 52.6 1.9 20 52-71 365-384 (578)
395 1pui_A ENGB, probable GTP-bind 61.9 2.5 8.7E-05 44.4 1.5 20 52-71 24-43 (210)
396 3nwj_A ATSK2; P loop, shikimat 61.8 4.6 0.00016 44.8 3.6 17 54-70 48-64 (250)
397 2jgn_A DBX, DDX3, ATP-dependen 61.6 2.6 9E-05 44.3 1.5 31 795-825 125-156 (185)
398 1sxj_A Activator 1 95 kDa subu 61.6 8.2 0.00028 47.3 6.1 17 54-70 77-93 (516)
399 2ocp_A DGK, deoxyguanosine kin 61.3 3.2 0.00011 45.3 2.2 18 54-71 2-19 (241)
400 3hr8_A Protein RECA; alpha and 61.3 3.2 0.00011 48.6 2.3 24 53-76 60-83 (356)
401 3fe2_A Probable ATP-dependent 61.2 22 0.00076 38.4 9.0 75 424-503 101-181 (242)
402 3k1j_A LON protease, ATP-depen 61.0 5.3 0.00018 50.0 4.4 27 44-70 50-76 (604)
403 1sq5_A Pantothenate kinase; P- 60.9 5.2 0.00018 45.6 4.0 20 52-71 78-97 (308)
404 3t15_A Ribulose bisphosphate c 60.7 6.7 0.00023 44.3 4.8 17 54-70 36-52 (293)
405 2npi_A Protein CLP1; CLP1-PCF1 60.7 3.2 0.00011 50.3 2.2 23 49-71 133-155 (460)
406 2qp9_X Vacuolar protein sortin 60.5 6.5 0.00022 45.7 4.8 18 54-71 84-101 (355)
407 3b5x_A Lipid A export ATP-bind 60.5 3.1 0.00011 51.9 2.1 42 315-358 494-535 (582)
408 1u94_A RECA protein, recombina 60.4 3.9 0.00013 47.9 2.8 26 51-76 60-85 (356)
409 3qf4_B Uncharacterized ABC tra 60.3 2.9 9.8E-05 52.4 1.8 44 315-359 505-548 (598)
410 3qkt_A DNA double-strand break 60.2 3.3 0.00011 47.9 2.2 20 53-72 22-41 (339)
411 2q6t_A DNAB replication FORK h 60.0 3.6 0.00012 49.5 2.5 30 47-76 193-222 (444)
412 1iy2_A ATP-dependent metallopr 60.0 6.4 0.00022 43.8 4.4 17 55-71 74-90 (278)
413 3b60_A Lipid A export ATP-bind 60.0 3 0.0001 52.1 1.8 42 316-358 495-536 (582)
414 3sop_A Neuronal-specific septi 59.8 3.6 0.00012 46.2 2.3 16 56-71 4-19 (270)
415 1ltq_A Polynucleotide kinase; 59.8 3.6 0.00012 46.2 2.4 18 55-72 3-20 (301)
416 3qf4_A ABC transporter, ATP-bi 59.6 3.1 0.00011 52.0 1.9 42 315-358 493-534 (587)
417 1sxj_B Activator 1 37 kDa subu 59.5 8.6 0.00029 43.1 5.5 26 45-70 31-58 (323)
418 1c9k_A COBU, adenosylcobinamid 59.3 4.1 0.00014 43.0 2.5 48 57-106 2-49 (180)
419 2v26_A Myosin VI; calmodulin-b 59.2 7.7 0.00026 50.0 5.4 42 36-77 117-166 (784)
420 2x8a_A Nuclear valosin-contain 59.1 5.6 0.00019 44.6 3.8 16 55-70 45-60 (274)
421 4a1f_A DNAB helicase, replicat 59.1 3.9 0.00013 47.5 2.5 32 45-76 37-68 (338)
422 3pxg_A Negative regulator of g 59.0 5.2 0.00018 48.4 3.7 24 46-69 191-216 (468)
423 1e69_A Chromosome segregation 58.8 3.7 0.00013 47.1 2.2 18 54-71 24-41 (322)
424 1svm_A Large T antigen; AAA+ f 58.5 4 0.00014 48.2 2.5 20 52-71 167-186 (377)
425 3bgw_A DNAB-like replicative h 58.5 4 0.00014 49.2 2.5 26 51-76 194-219 (444)
426 2yv5_A YJEQ protein; hydrolase 58.2 6 0.0002 45.0 3.8 26 50-75 161-186 (302)
427 3vfd_A Spastin; ATPase, microt 58.0 9.2 0.00031 44.9 5.5 17 54-70 148-164 (389)
428 2chq_A Replication factor C sm 57.9 5.5 0.00019 44.6 3.5 15 56-70 40-54 (319)
429 2ius_A DNA translocase FTSK; n 57.8 5 0.00017 49.2 3.2 24 52-75 165-188 (512)
430 3cr8_A Sulfate adenylyltranfer 57.5 4.2 0.00014 50.5 2.5 20 51-70 366-385 (552)
431 2yl4_A ATP-binding cassette SU 57.2 3.2 0.00011 51.9 1.5 48 316-366 498-545 (595)
432 2r2a_A Uncharacterized protein 56.6 6.1 0.00021 42.2 3.4 21 56-76 7-27 (199)
433 4ddu_A Reverse gyrase; topoiso 56.3 9.2 0.00032 51.4 5.7 78 424-503 120-201 (1104)
434 2dyk_A GTP-binding protein; GT 56.3 5.7 0.0002 39.3 2.9 21 56-76 3-23 (161)
435 3b6e_A Interferon-induced heli 56.1 0.89 3.1E-05 48.1 -3.4 45 1120-1165 158-216 (216)
436 2rb4_A ATP-dependent RNA helic 56.1 3.4 0.00012 42.7 1.3 31 795-825 119-150 (175)
437 3eie_A Vacuolar protein sortin 56.1 7.4 0.00025 44.4 4.2 17 54-70 51-67 (322)
438 1q57_A DNA primase/helicase; d 56.0 4.1 0.00014 49.7 2.1 33 45-77 233-265 (503)
439 1g8p_A Magnesium-chelatase 38 55.9 5.6 0.00019 45.5 3.1 17 53-69 44-60 (350)
440 1um8_A ATP-dependent CLP prote 55.8 8.3 0.00028 44.9 4.6 17 53-69 71-87 (376)
441 2hjv_A ATP-dependent RNA helic 55.8 3.8 0.00013 41.8 1.5 31 795-825 114-145 (163)
442 1qde_A EIF4A, translation init 55.8 31 0.0011 36.4 8.8 75 423-503 80-160 (224)
443 3bor_A Human initiation factor 55.7 31 0.0011 37.1 9.0 76 424-503 97-178 (237)
444 2ce2_X GTPase HRAS; signaling 55.4 6 0.0002 39.1 2.9 21 56-76 5-25 (166)
445 3ld9_A DTMP kinase, thymidylat 55.1 8 0.00027 42.2 4.0 19 53-71 20-38 (223)
446 3ake_A Cytidylate kinase; CMP 55.0 5.1 0.00017 42.0 2.4 16 56-71 4-19 (208)
447 2wsm_A Hydrogenase expression/ 54.8 9.7 0.00033 40.3 4.6 25 53-77 29-53 (221)
448 1xp8_A RECA protein, recombina 54.5 5.5 0.00019 46.8 2.8 26 51-76 71-96 (366)
449 2f6r_A COA synthase, bifunctio 54.5 5 0.00017 45.2 2.3 18 55-72 76-93 (281)
450 2zan_A Vacuolar protein sortin 54.4 13 0.00044 44.6 6.1 18 54-71 167-184 (444)
451 2gxq_A Heat resistant RNA depe 54.4 26 0.00091 36.3 7.9 73 424-503 71-149 (207)
452 2rcn_A Probable GTPase ENGC; Y 54.1 6.7 0.00023 45.9 3.4 22 51-72 212-233 (358)
453 1uj2_A Uridine-cytidine kinase 54.0 5.3 0.00018 43.9 2.4 15 55-69 23-37 (252)
454 4a2q_A RIG-I, retinoic acid in 53.9 4 0.00014 52.9 1.5 103 38-141 247-362 (797)
455 3io5_A Recombination and repai 53.9 6.8 0.00023 45.2 3.3 22 56-77 30-51 (333)
456 2i4i_A ATP-dependent RNA helic 53.9 4 0.00014 47.8 1.5 68 36-103 34-124 (417)
457 2grj_A Dephospho-COA kinase; T 53.8 5.2 0.00018 42.5 2.2 19 54-72 12-30 (192)
458 1z2a_A RAS-related protein RAB 53.7 6.7 0.00023 39.0 2.9 20 56-75 7-26 (168)
459 2qag_B Septin-6, protein NEDD5 53.6 4.3 0.00015 48.6 1.7 23 50-72 36-60 (427)
460 1lw7_A Transcriptional regulat 53.6 4.6 0.00016 47.1 1.9 18 54-71 170-187 (365)
461 2c9o_A RUVB-like 1; hexameric 53.3 10 0.00035 45.6 5.0 15 55-69 64-78 (456)
462 3r20_A Cytidylate kinase; stru 52.9 8.4 0.00029 42.3 3.8 19 53-71 8-26 (233)
463 1lkx_A Myosin IE heavy chain; 52.9 11 0.00036 48.1 5.1 40 40-79 77-122 (697)
464 1tue_A Replication protein E1; 52.6 6.5 0.00022 42.5 2.7 15 55-69 59-73 (212)
465 2ged_A SR-beta, signal recogni 52.6 6.9 0.00024 40.3 2.9 23 54-76 48-70 (193)
466 2j0s_A ATP-dependent RNA helic 52.5 4.9 0.00017 47.0 1.9 75 424-503 104-184 (410)
467 1ky3_A GTP-binding protein YPT 52.4 7.1 0.00024 39.4 2.9 21 56-76 10-30 (182)
468 1u0l_A Probable GTPase ENGC; p 52.3 8.4 0.00029 43.7 3.8 21 51-71 166-186 (301)
469 2f9l_A RAB11B, member RAS onco 52.2 7.1 0.00024 40.8 2.9 20 56-75 7-26 (199)
470 2z4s_A Chromosomal replication 52.0 8.7 0.0003 46.1 4.0 17 54-70 130-146 (440)
471 3zvl_A Bifunctional polynucleo 52.0 7.2 0.00025 46.5 3.3 22 54-75 258-279 (416)
472 1w5s_A Origin recognition comp 51.8 8.1 0.00028 45.1 3.6 18 54-71 50-69 (412)
473 1yqt_A RNAse L inhibitor; ATP- 51.8 5.1 0.00017 49.5 2.0 22 51-72 44-65 (538)
474 4anj_A Unconventional myosin-V 51.7 11 0.00037 50.1 5.1 43 36-78 121-171 (1052)
475 1ek0_A Protein (GTP-binding pr 51.7 7.5 0.00026 38.7 2.9 21 56-76 5-25 (170)
476 4aby_A DNA repair protein RECN 51.7 2.7 9.3E-05 49.7 -0.5 39 321-360 317-355 (415)
477 1oix_A RAS-related protein RAB 51.7 7.2 0.00025 40.6 2.9 20 56-75 31-50 (191)
478 1u8z_A RAS-related protein RAL 51.3 7.7 0.00026 38.4 2.9 21 56-76 6-26 (168)
479 1kao_A RAP2A; GTP-binding prot 51.3 7.7 0.00026 38.4 2.9 21 56-76 5-25 (167)
480 3ux8_A Excinuclease ABC, A sub 51.2 5 0.00017 50.9 1.8 20 52-71 346-365 (670)
481 2wji_A Ferrous iron transport 51.1 7.7 0.00026 39.1 2.9 20 56-75 5-24 (165)
482 3pqc_A Probable GTP-binding pr 51.1 7.3 0.00025 39.9 2.8 22 55-76 24-45 (195)
483 1g16_A RAS-related protein SEC 51.0 7.7 0.00026 38.7 2.9 21 56-76 5-25 (170)
484 2v1x_A ATP-dependent DNA helic 50.8 18 0.00063 45.0 6.8 59 425-488 84-144 (591)
485 1tf7_A KAIC; homohexamer, hexa 50.8 6.1 0.00021 48.5 2.5 26 50-75 277-302 (525)
486 1z0j_A RAB-22, RAS-related pro 50.7 7.9 0.00027 38.6 2.9 21 56-76 8-28 (170)
487 3m6a_A ATP-dependent protease 50.6 6.5 0.00022 48.6 2.7 18 53-70 107-124 (543)
488 1a7j_A Phosphoribulokinase; tr 50.6 5.1 0.00018 45.4 1.6 17 54-70 5-21 (290)
489 4akg_A Glutathione S-transfera 50.5 7.3 0.00025 56.7 3.4 26 46-71 915-940 (2695)
490 4f4c_A Multidrug resistance pr 50.4 4.4 0.00015 55.5 1.2 21 51-71 1102-1122(1321)
491 1g41_A Heat shock protein HSLU 50.4 20 0.00067 43.2 6.7 18 54-71 50-67 (444)
492 2erx_A GTP-binding protein DI- 50.3 8.1 0.00028 38.5 2.9 20 56-75 5-24 (172)
493 2r62_A Cell division protease 50.2 4.8 0.00017 44.3 1.3 17 54-70 44-60 (268)
494 1sxj_E Activator 1 40 kDa subu 50.2 6.9 0.00024 44.8 2.7 43 317-361 132-174 (354)
495 3pxi_A Negative regulator of g 50.1 8.4 0.00029 49.5 3.7 25 46-70 191-217 (758)
496 1c1y_A RAS-related protein RAP 50.0 8.3 0.00028 38.3 2.9 20 56-75 5-24 (167)
497 1svi_A GTP-binding protein YSX 50.0 7.8 0.00027 39.9 2.8 22 54-75 23-44 (195)
498 2v3c_C SRP54, signal recogniti 49.9 27 0.00093 41.8 7.9 17 55-71 100-116 (432)
499 2hf9_A Probable hydrogenase ni 49.9 8.9 0.00031 40.7 3.3 24 54-77 38-61 (226)
500 2lkc_A Translation initiation 49.6 9.6 0.00033 38.4 3.4 22 54-75 8-29 (178)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.8e-81 Score=805.39 Aligned_cols=572 Identities=34% Similarity=0.563 Sum_probs=507.0
Q ss_pred hhhhhhhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC-----CcEEEecchHHHH
Q psy3476 19 FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF-----QRIACTQPRRIAC 93 (1417)
Q Consensus 19 ~~~~~~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~-----~~i~~tqPrr~aa 93 (1417)
|.....-.++.++.+.|..+|++.+|++|...+.++++++|+|||||||||++|+++++.+. .+++|++|+|.+|
T Consensus 74 f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La 153 (773)
T 2xau_A 74 FTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAA 153 (773)
T ss_dssp TTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHH
T ss_pred ccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHH
Confidence 44333334567788888899999999999999999999999999999999999999887543 3599999999999
Q ss_pred HHHHHHHHHHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHH
Q psy3476 94 ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIK 173 (1417)
Q Consensus 94 ~~~a~rva~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1417)
.+++++++.+++..+|..+||.++++......++|+++|+|++++.+..+
T Consensus 154 ~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~------------------------------ 203 (773)
T 2xau_A 154 MSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED------------------------------ 203 (773)
T ss_dssp HHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS------------------------------
T ss_pred HHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhC------------------------------
Confidence 99999999999999999999999999888889999999999999865432
Q ss_pred hhhhhhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhcccccc
Q psy3476 174 RKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGD 253 (1417)
Q Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d 253 (1417)
T Consensus 204 -------------------------------------------------------------------------------- 203 (773)
T 2xau_A 204 -------------------------------------------------------------------------------- 203 (773)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCccccc
Q psy3476 254 FLLGVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHL 333 (1417)
Q Consensus 254 ~l~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l 333 (1417)
..+.++++|||||+|+|++
T Consensus 204 -------------------------------------------------------------~~l~~~~~lIlDEah~R~l 222 (773)
T 2xau_A 204 -------------------------------------------------------------HDLSRYSCIILDEAHERTL 222 (773)
T ss_dssp -------------------------------------------------------------TTCTTEEEEEECSGGGCCH
T ss_pred -------------------------------------------------------------ccccCCCEEEecCcccccc
Confidence 3467889999999999999
Q ss_pred CcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHH
Q psy3476 334 HGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRIL 413 (1417)
Q Consensus 334 ~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il 413 (1417)
+.+++..+++.+...+++.++|+||||++.+.+.+|| ++++++.++++.+|++++|.+....++ ....+
T Consensus 223 d~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~-~~~~vi~v~gr~~pv~~~~~~~~~~~~----------~~~~l 291 (773)
T 2xau_A 223 ATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYF-NDAPLLAVPGRTYPVELYYTPEFQRDY----------LDSAI 291 (773)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHT-TSCCEEECCCCCCCEEEECCSSCCSCH----------HHHHH
T ss_pred chHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHh-cCCCcccccCcccceEEEEecCCchhH----------HHHHH
Confidence 9999999999988888899999999999999999999 578899999999999998876543222 22233
Q ss_pred HHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh------ccCCcEEEEecCCCCHHHHHHHhccCC-----CCCce
Q psy3476 414 SIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE------KSQGWIVLPLHSTLSLEEQDRVFHYAP-----EGLRK 482 (1417)
Q Consensus 414 ~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~------~~~~~~V~~LHs~Ls~~eR~~v~~~f~-----~G~rk 482 (1417)
..+.+.+....+|++||||+|+++++.+++.|.+... ...++.+.++||+|++++|.++++.|+ +|.++
T Consensus 292 ~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k 371 (773)
T 2xau_A 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK 371 (773)
T ss_dssp HHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE
T ss_pred HHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE
Confidence 3333333224578999999999999999999975321 236789999999999999999999999 99999
Q ss_pred EEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHH-HHhhc
Q psy3476 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQY-SLLAE 561 (1417)
Q Consensus 483 VLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~-~~l~~ 561 (1417)
||||||++|+|||||+|++|||+|+.|.+.||+..++..+...|+|+++|.||+|||||.++|.||+||+++++ ..+.+
T Consensus 372 VlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~ 451 (773)
T 2xau_A 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIE 451 (773)
T ss_dssp EEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCS
T ss_pred EEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 57999
Q ss_pred cCCCcccccChHHHHHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHH
Q psy3476 562 YSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLV 641 (1417)
Q Consensus 562 ~~~pEI~r~~L~~~lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll 641 (1417)
+..|||.+.+|.+++|+++.+|+.++..|+|++||+.+.+..|++.|..+||||.++++|++|+.|+.||++|++||||+
T Consensus 452 ~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~ 531 (773)
T 2xau_A 452 QSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLI 531 (773)
T ss_dssp SCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHH
T ss_pred cCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCChhhHHHHhhhccCCCccccCCCCChhHHHHHhhcccCCCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHH
Q psy3476 642 FGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQ 721 (1417)
Q Consensus 642 ~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~ 721 (1417)
.|+.++|++++++|+|+|+++++|..|...+++++.+|+.|....|||++++|+|++|.+....+...++||++|||+++
T Consensus 532 ~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~ 611 (773)
T 2xau_A 532 GSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYR 611 (773)
T ss_dssp HGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHH
T ss_pred hhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHH
Confidence 99999999999999999999999999998888888999999999999999999999997653211122789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcCCCCC--CCChhHHHHHHhcCchHHHHHHH
Q psy3476 722 RFYEVTKLRSQFKQVLGDSGLITDIPGP--DASLSSRERALRHGEIKLLQAIK 772 (1417)
Q Consensus 722 ~L~ei~~lr~QL~~iL~~~gl~~~~~~~--~~~~~s~~ral~~G~~~~L~~l~ 772 (1417)
+|+++.++|+||.++|.+.|+....++. ..+.+.+.+++.+|++++++...
T Consensus 612 ~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~ 664 (773)
T 2xau_A 612 SLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKR 664 (773)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHHhChHhheeec
Confidence 9999999999999999999987654332 12346789999999998887554
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-50 Score=521.96 Aligned_cols=553 Identities=16% Similarity=0.115 Sum_probs=374.8
Q ss_pred CcHHHHHHHHHH-HhcCCeEEEEcCCCcchhHHHHHHHHHcC---CCcEEEecchHHHHHHHHHHHH--HHHccccCCeE
Q psy3476 39 PVAQYKQEIIDT-VLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACISLSKRVA--YETLSQYSNLV 112 (1417)
Q Consensus 39 p~~~~q~~il~~-i~~~~~~iI~a~TGsGKTt~ipq~ile~~---~~~i~~tqPrr~aa~~~a~rva--~e~~~~~g~~v 112 (1417)
..+.+|.++++. +.++++++|+||||||||+++++++++.. ..+++|++|+|.+|.++++++. .+.+..+|..+
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~ 109 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTS 109 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 568999999998 88999999999999999999999998642 3689999999999999999882 12223333333
Q ss_pred EEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccc
Q psy3476 113 GYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNA 192 (1417)
Q Consensus 113 Gy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 192 (1417)
|+..+.+... ..++|+|+|+|++.+.+..+
T Consensus 110 G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~------------------------------------------------- 139 (715)
T 2va8_A 110 GDYDTDDAWL-KNYDIIITTYEKLDSLWRHR------------------------------------------------- 139 (715)
T ss_dssp SCSSSCCGGG-GGCSEEEECHHHHHHHHHHC-------------------------------------------------
T ss_pred CCCCCchhhc-CCCCEEEEcHHHHHHHHhCC-------------------------------------------------
Confidence 4433433322 37899999999988765322
Q ss_pred hhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccccc
Q psy3476 193 YEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAA 272 (1417)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~ 272 (1417)
T Consensus 140 -------------------------------------------------------------------------------- 139 (715)
T 2va8_A 140 -------------------------------------------------------------------------------- 139 (715)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCC
Q psy3476 273 DYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV 352 (1417)
Q Consensus 273 ~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~ 352 (1417)
..+++++++||+||+|+.. +.++...+...+.+. ++.
T Consensus 140 -----------------------------------------~~~l~~~~~vIiDE~H~l~-~~~~~~~l~~i~~~~-~~~ 176 (715)
T 2va8_A 140 -----------------------------------------PEWLNEVNYFVLDELHYLN-DPERGPVVESVTIRA-KRR 176 (715)
T ss_dssp -----------------------------------------CGGGGGEEEEEECSGGGGG-CTTTHHHHHHHHHHH-HTS
T ss_pred -----------------------------------------hhHhhccCEEEEechhhcC-CcccchHHHHHHHhc-ccC
Confidence 0235578999999999543 323332222222222 289
Q ss_pred cEEEEccCC-CHHHHHHHhccCceEEEeCCcccceeEEeccccc------ccccc--ccCCCCChHHHHHHHHHhhCCCC
Q psy3476 353 KIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVE------LDRTK--SEKLDPGPYIRILSIIDKKYPRT 423 (1417)
Q Consensus 353 qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~------~~~~~--~~~~~~~~~~~il~~l~~~~~~~ 423 (1417)
|+|+||||+ |.+.+++|+ +++.+..++|++|+...+..... ..+.. ...+.. ...+...+.+.+ .
T Consensus 177 ~ii~lSATl~n~~~~~~~l--~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~ 250 (715)
T 2va8_A 177 NLLALSATISNYKQIAKWL--GAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHG--DDAIIAYTLDSL--S 250 (715)
T ss_dssp EEEEEESCCTTHHHHHHHH--TCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEES--SSHHHHHHHHHH--T
T ss_pred cEEEEcCCCCCHHHHHHHh--CCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhccc--chHHHHHHHHHH--h
Confidence 999999999 599999999 47888999999998865532210 00000 000000 012233333333 2
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhc-------------------------------cCCcEEEEecCCCCHHHHHHH
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEK-------------------------------SQGWIVLPLHSTLSLEEQDRV 472 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~-------------------------------~~~~~V~~LHs~Ls~~eR~~v 472 (1417)
.++++||||+|+++++.+++.|.+.... .....+.++||+|+.++|..+
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 4689999999999999999999864211 001358999999999999999
Q ss_pred hccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEE
Q psy3476 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYR 549 (1417)
Q Consensus 473 ~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~ 549 (1417)
++.|++|.++|||||+++++|||+|++++||++ ...||+..+.. ..|+|.+++.||+|||||.| +|.||+
T Consensus 331 ~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 403 (715)
T 2va8_A 331 EEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIV 403 (715)
T ss_dssp HHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEE
T ss_pred HHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEE
Confidence 999999999999999999999999999999995 45677544322 46899999999999999999 899999
Q ss_pred ecCHHH-HHH-hhc--cCCCcccccChHH------HHHHHHhhCCC----CCcCC---CCCC-CCCcchhHHHHHHHHhc
Q psy3476 550 LYSEEQ-YSL-LAE--YSTPEIRRVSIDS------LLLSLVCMGLG----DVRKF---PFLE-APPAENIESSVRSLTQH 611 (1417)
Q Consensus 550 L~t~~~-~~~-l~~--~~~pEI~r~~L~~------~lL~lk~lgi~----~~~~f---~~l~-pP~~~~l~~Al~~L~~l 611 (1417)
++++.+ +.. +.. ...||+.+.++.. .+|.++..|.. ++..| .|+. +|+...++.|++.|.++
T Consensus 404 l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~ 483 (715)
T 2va8_A 404 VVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEH 483 (715)
T ss_dssp ECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHT
T ss_pred EeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHC
Confidence 998765 333 222 4578888876554 77888887732 22211 3332 44456799999999999
Q ss_pred CCCCCCC---CcChhhhhccCCCCChhhHHHHHhhhcc---CChhhHHHHhhhccCCCccccCCCCChhHHHHHhhccc-
Q psy3476 612 GAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMF---HQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELES- 684 (1417)
Q Consensus 612 GaId~~~---~lT~LG~~ls~lpldp~lak~Ll~~~~f---~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~~- 684 (1417)
|+|+.++ .+|++|+.++.+|++|.++++++.+... .|..+++.|+|+.+ .|.....+..+.+..++.+..
T Consensus 484 g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~---e~~~~~~r~~e~~~l~~~~~~~ 560 (715)
T 2va8_A 484 SFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTP---DGPLVSVGRNEEEELIELLEDL 560 (715)
T ss_dssp TSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHST---TSCCCCCCHHHHHHHHHHHTTC
T ss_pred cCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCc---ccccCccChHHHHHHHHHHHhc
Confidence 9998764 7999999999999999999999999887 67777777666543 344444444444444333221
Q ss_pred --------CCC--------ChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHHHHHH----HHHHCCCCc
Q psy3476 685 --------NHG--------DPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQ----VLGDSGLIT 744 (1417)
Q Consensus 685 --------~~s--------D~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~QL~~----iL~~~gl~~ 744 (1417)
+.. .++-..-+.++|.+. .....+|+++++..+.++.+.+....|.+ ++...|...
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~----~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~ 636 (715)
T 2va8_A 561 DCELLIEEPYEEDEYSLYINALKVALIMKDWMDE----VDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNE 636 (715)
T ss_dssp SSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred chhhcccccccccchhhhHHHHHHHHHHHHHHcC----CCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 000 122223345666532 24567899999999998888775555544 555555421
Q ss_pred CCCCCCCChhHHHHHHhcCchHHHHHHHhhhccccccccccccccc
Q psy3476 745 DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 790 (1417)
Q Consensus 745 ~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~~~~r~rk~l~~~~ 790 (1417)
. ........+++.+|-...+..|. +.+ ..|+.|++.-.+.
T Consensus 637 ~----~~~l~~l~~rl~~gv~~e~~~L~-qlp-~i~~~rar~L~~~ 676 (715)
T 2va8_A 637 H----ADKLRILNLRVRDGIKEELLELV-QIS-GVGRKRARLLYNN 676 (715)
T ss_dssp H----HHHHHHHHHHHHHTCCGGGHHHH-TST-TCCHHHHHHHHHT
T ss_pred H----HHHHHHHHHHHHcCCChhhcchh-hCC-CCCHHHHHHHHHc
Confidence 1 11245567788888877777775 333 4556665544433
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.6e-48 Score=496.86 Aligned_cols=526 Identities=18% Similarity=0.181 Sum_probs=376.8
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC--CCcEEEecchHHHHHHHHHHHHHHHccccCCeEEE--
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG--FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGY-- 114 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~--~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy-- 114 (1417)
..+.+|.++++.+.++++++|+||||||||+++++++++.. ..+++|++|+|.+|.++++++. .. ..+|..||.
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~-~~-~~~g~~v~~~~ 102 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK-KW-EKIGLRIGIST 102 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT-TT-TTTTCCEEEEC
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHH-HH-HhcCCEEEEEe
Confidence 34677999999999999999999999999999999988653 3689999999999999999883 22 233444544
Q ss_pred --EEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccc
Q psy3476 115 --QIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNA 192 (1417)
Q Consensus 115 --~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 192 (1417)
..+.+.. ...++|+|+|+|++.+.+..+
T Consensus 103 G~~~~~~~~-~~~~~Iiv~Tpe~l~~~l~~~------------------------------------------------- 132 (702)
T 2p6r_A 103 GDYESRDEH-LGDCDIIVTTSEKADSLIRNR------------------------------------------------- 132 (702)
T ss_dssp SSCBCCSSC-STTCSEEEEEHHHHHHHHHTT-------------------------------------------------
T ss_pred CCCCcchhh-ccCCCEEEECHHHHHHHHHcC-------------------------------------------------
Confidence 3333322 237899999999988765432
Q ss_pred hhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccccc
Q psy3476 193 YEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAA 272 (1417)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~ 272 (1417)
T Consensus 133 -------------------------------------------------------------------------------- 132 (702)
T 2p6r_A 133 -------------------------------------------------------------------------------- 132 (702)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCccccc--CcchHHHHHHHHhccCC
Q psy3476 273 DYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHL--HGDFLLGVIKCLLHSTA 350 (1417)
Q Consensus 273 ~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l--~~d~ll~llk~l~~~r~ 350 (1417)
..+++++++||+||+|+..- .+..+..++..+...++
T Consensus 133 -----------------------------------------~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (702)
T 2p6r_A 133 -----------------------------------------ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171 (702)
T ss_dssp -----------------------------------------CSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT
T ss_pred -----------------------------------------hhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCc
Confidence 02355789999999995221 22334444555555678
Q ss_pred CCcEEEEccCCC-HHHHHHHhccCceEEEeCCcccceeEEeccccccccccccC---CCCChHHHHHHHHHhhCCCCCCC
Q psy3476 351 EVKIILMSATIN-IELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEK---LDPGPYIRILSIIDKKYPRTERG 426 (1417)
Q Consensus 351 ~~qvIlmSATln-~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~---~~~~~~~~il~~l~~~~~~~~~g 426 (1417)
+.|+|+||||++ .+.+++|+ +++++..++|++|+...+............. .... ....+.+.+ ..++
T Consensus 172 ~~~ii~lSATl~n~~~~~~~l--~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~ 243 (702)
T 2p6r_A 172 ALRVIGLSATAPNVTEIAEWL--DADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVK----FEELVEECV--AENG 243 (702)
T ss_dssp TCEEEEEECCCTTHHHHHHHT--TCEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECC----HHHHHHHHH--HTTC
T ss_pred CceEEEECCCcCCHHHHHHHh--CCCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhh----HHHHHHHHH--hcCC
Confidence 899999999994 99999999 4788999999999987654322211111000 0000 122222222 2468
Q ss_pred cEEEEeCCHHHHHHHHHHHHhhhhc-------------------------cCCcEEEEecCCCCHHHHHHHhccCCCCCc
Q psy3476 427 DVLIFMSGISEISSIVRAAQEYNEK-------------------------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLR 481 (1417)
Q Consensus 427 ~iLVFl~~~~eie~la~~L~~~~~~-------------------------~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~r 481 (1417)
++||||+++++++.+++.|.+.... ..+..+.++||+|++++|..+++.|++|.+
T Consensus 244 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 323 (702)
T 2p6r_A 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 323 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCC
Confidence 9999999999999999998764211 001357889999999999999999999999
Q ss_pred eEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHHH
Q psy3476 482 KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 482 kVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~~ 558 (1417)
+|||||+++++|||+|++++||++ ...|| +. ..|+|.+++.||+|||||.| +|.||.++++.+++.
T Consensus 324 ~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 324 KVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp CEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred eEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 999999999999999999999995 45677 11 56899999999999999999 899999999888665
Q ss_pred hhc---cCCCcccccChHH------HHHHHHhhCCC-CCc--------CCCCC--CCCCcchhHHHHHHHHhcCCCCCC-
Q psy3476 559 LAE---YSTPEIRRVSIDS------LLLSLVCMGLG-DVR--------KFPFL--EAPPAENIESSVRSLTQHGAIDSK- 617 (1417)
Q Consensus 559 l~~---~~~pEI~r~~L~~------~lL~lk~lgi~-~~~--------~f~~l--~pP~~~~l~~Al~~L~~lGaId~~- 617 (1417)
+.+ ...||+.+.++.. .++.++..|.. +.. +|.+. .+|..+.++.|++.|.+.|+|+.+
T Consensus 393 ~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~ 472 (702)
T 2p6r_A 393 AVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAA 472 (702)
T ss_dssp HHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECC
Confidence 432 4578888876554 67777777732 211 22221 367888999999999999999977
Q ss_pred -CCcChhhhhccCCCCChhhHHHHHhhhcc--CChhhHHHHhhhccCCCccccCCCCChhHHHHHhhcc--------cC-
Q psy3476 618 -ERVTSLGRFLSDLPVDIPLGKMLVFGSMF--HQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELE--------SN- 685 (1417)
Q Consensus 618 -~~lT~LG~~ls~lpldp~lak~Ll~~~~f--~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~--------~~- 685 (1417)
..+|++|+.++.+|++|.++++++.+... .|...++.++++.+ .|.....+..+ +...+.+. .+
T Consensus 473 ~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~---e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~ 548 (702)
T 2p6r_A 473 HLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTP---DMERLTVRKTD-SWVEEEAFRLRKELSYYPS 548 (702)
T ss_dssp SEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHST---TSCCCCCCTTT-HHHHHHHHHHGGGSSCCCC
T ss_pred eeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCc---ccccCCCCCch-HHHHHHHHhccccccCCcc
Confidence 68999999999999999999999999888 78888887776544 33332233333 22222111 11
Q ss_pred -CC-------ChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHH----HHHHHHHHCCCCcCCCCCCCCh
Q psy3476 686 -HG-------DPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRS----QFKQVLGDSGLITDIPGPDASL 753 (1417)
Q Consensus 686 -~s-------D~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~----QL~~iL~~~gl~~~~~~~~~~~ 753 (1417)
.. .++-..-+.++|.+. ......|+++++..+.++.+.+--. .+.+++...|.. ..
T Consensus 549 ~~~~~~~~~~~~~k~~~lL~~~~~~----~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g~~--------~l 616 (702)
T 2p6r_A 549 DFSVEYDWFLSEVKTALCLKDWIEE----KDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNT--------SV 616 (702)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------SS
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHcC----CChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHHcCHH--------HH
Confidence 11 233344456778642 2455789999998888877766544 444566666642 34
Q ss_pred hHHHHHHhcCchHHHHHHH
Q psy3476 754 SSRERALRHGEIKLLQAIK 772 (1417)
Q Consensus 754 ~s~~ral~~G~~~~L~~l~ 772 (1417)
....+++.+|-...+..|.
T Consensus 617 ~~l~~ri~~gv~~~~~~L~ 635 (702)
T 2p6r_A 617 SGLTERIKHGVKEELLELV 635 (702)
T ss_dssp TTHHHHHHHTCCGGGHHHH
T ss_pred HHHHHHHHcCCCcchHhhh
Confidence 5667788888877776665
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.7e-46 Score=481.69 Aligned_cols=556 Identities=16% Similarity=0.088 Sum_probs=371.3
Q ss_pred HHHHHhcCCCcHHHHHHHHHH-HhcCCeEEEEcCCCcchhHHHHHHHHHcC---CCcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 30 KIRETQNSLPVAQYKQEIIDT-VLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 30 ~~~~~r~~lp~~~~q~~il~~-i~~~~~~iI~a~TGsGKTt~ipq~ile~~---~~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
+..+.+.--..+.+|.++++. +.++++++|+||||||||+++++++++.. ..+++|++|+|.+|.++++++. .+
T Consensus 14 ~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~-~l- 91 (720)
T 2zj8_A 14 STLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQ-DW- 91 (720)
T ss_dssp HHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTG-GG-
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHH-HH-
Confidence 344444444678999999998 88999999999999999999988887543 3689999999999999999984 22
Q ss_pred cccCCeEEEEEe---ecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhH
Q psy3476 106 SQYSNLVGYQIR---FEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182 (1417)
Q Consensus 106 ~~~g~~vGy~ir---~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1417)
..+|..||..+. .+.+....++|+|+|+|++.+.+..+
T Consensus 92 ~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~--------------------------------------- 132 (720)
T 2zj8_A 92 EKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHG--------------------------------------- 132 (720)
T ss_dssp GGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHT---------------------------------------
T ss_pred HhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcC---------------------------------------
Confidence 334666665443 22222346889999999887654321
Q ss_pred HhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCC
Q psy3476 183 RRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPP 262 (1417)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~ 262 (1417)
T Consensus 133 -------------------------------------------------------------------------------- 132 (720)
T 2zj8_A 133 -------------------------------------------------------------------------------- 132 (720)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHH
Q psy3476 263 LHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVI 342 (1417)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ll 342 (1417)
..+++++++||+||+| +..+.+....+.
T Consensus 133 ---------------------------------------------------~~~l~~~~~vIiDE~H-~l~~~~r~~~~~ 160 (720)
T 2zj8_A 133 ---------------------------------------------------SSWIKDVKILVADEIH-LIGSRDRGATLE 160 (720)
T ss_dssp ---------------------------------------------------CTTGGGEEEEEEETGG-GGGCTTTHHHHH
T ss_pred ---------------------------------------------------hhhhhcCCEEEEECCc-ccCCCcccHHHH
Confidence 0235678999999999 322222332222
Q ss_pred HHHhccCCCCcEEEEccCC-CHHHHHHHhccCceEEEeCCcccceeEEecccccccccccc-CCCCChHHHHHHHHHhhC
Q psy3476 343 KCLLHSTAEVKIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSE-KLDPGPYIRILSIIDKKY 420 (1417)
Q Consensus 343 k~l~~~r~~~qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~-~~~~~~~~~il~~l~~~~ 420 (1417)
..+...+.+.|+|+||||+ |.+.+++|+ +++.+..++|++|+...+............ .........+.+.+
T Consensus 161 ~ll~~l~~~~~ii~lSATl~n~~~~~~~l--~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 234 (720)
T 2zj8_A 161 VILAHMLGKAQIIGLSATIGNPEELAEWL--NAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI---- 234 (720)
T ss_dssp HHHHHHBTTBEEEEEECCCSCHHHHHHHT--TEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH----
T ss_pred HHHHHhhcCCeEEEEcCCcCCHHHHHHHh--CCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHH----
Confidence 2222233489999999999 799999999 467788889999988654322211111100 00111122222222
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc----------------------------cCCcEEEEecCCCCHHHHHHH
Q psy3476 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEK----------------------------SQGWIVLPLHSTLSLEEQDRV 472 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~~~eie~la~~L~~~~~~----------------------------~~~~~V~~LHs~Ls~~eR~~v 472 (1417)
..++++||||+++++++.+++.|.+.... .....+.++||+|++++|..+
T Consensus 235 --~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 312 (720)
T 2zj8_A 235 --RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLV 312 (720)
T ss_dssp --HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred --hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHH
Confidence 23689999999999999999999764211 001248999999999999999
Q ss_pred hccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEE
Q psy3476 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYR 549 (1417)
Q Consensus 473 ~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~ 549 (1417)
++.|++|.++|||||+++++|||+|++++||+++ ..|| ..+ ..|+|.+++.||+|||||.| +|.||.
T Consensus 313 ~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 382 (720)
T 2zj8_A 313 EENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGII 382 (720)
T ss_dssp HHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEE
T ss_pred HHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEE
Confidence 9999999999999999999999999999999955 3566 222 25899999999999999998 699999
Q ss_pred ecCHHHHHH----hhccCCCccccc-----ChHHHHHHHHhhCCC-C---Cc---CCCCC------CCCCcchhHHHHHH
Q psy3476 550 LYSEEQYSL----LAEYSTPEIRRV-----SIDSLLLSLVCMGLG-D---VR---KFPFL------EAPPAENIESSVRS 607 (1417)
Q Consensus 550 L~t~~~~~~----l~~~~~pEI~r~-----~L~~~lL~lk~lgi~-~---~~---~f~~l------~pP~~~~l~~Al~~ 607 (1417)
++++.+.+. +.....+++... .+...++.++..|.. + +. .+.|+ +++..+.+..+++.
T Consensus 383 l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (720)
T 2zj8_A 383 VSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYF 462 (720)
T ss_dssp ECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHH
T ss_pred EecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHH
Confidence 998766432 322233333322 366667777777632 1 11 12332 22223579999999
Q ss_pred HHhcCCCC-CCC---CcChhhhhccCCCCChhhHHHHHhhhcc----CChhhHHHHhhhccC-CCccccCCCCChhHHHH
Q psy3476 608 LTQHGAID-SKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMF----HQIDTVLSLAAVLSV-QSPFTNRAFRDPDCETA 678 (1417)
Q Consensus 608 L~~lGaId-~~~---~lT~LG~~ls~lpldp~lak~Ll~~~~f----~cle~vl~IaA~Lsv-~~~F~~~~~~~~~~~~~ 678 (1417)
|.+.|+|+ .++ .+|++|+.++.+|++|.++++++.+... .|..+++.|+|+.+. .+.|.+ ..+.+..
T Consensus 463 L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r----~~e~~~l 538 (720)
T 2zj8_A 463 LLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYS----KREFERL 538 (720)
T ss_dssp HHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCC----HHHHHHH
T ss_pred HHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccC----HHHHHHH
Confidence 99999998 655 6999999999999999999999999887 899999999887763 344433 3332222
Q ss_pred Hhhcc-----------cCCC----------ChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHH----HHHH
Q psy3476 679 RKELE-----------SNHG----------DPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKL----RSQF 733 (1417)
Q Consensus 679 r~~f~-----------~~~s----------D~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~l----r~QL 733 (1417)
++.+. -..+ .++-..-+.++|.+. .....-++++++..+.++.+.+- -+.+
T Consensus 539 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~----~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~ 614 (720)
T 2zj8_A 539 EEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINE----VPEGEIVEKYSVEPGDIYRIVETAEWLVYSL 614 (720)
T ss_dssp HHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhC----CCHHHHHHHhCCChHhHHHHHHHHHHHHHHH
Confidence 22210 0111 122222345666532 23345578888888877766554 4455
Q ss_pred HHHHHHCCCCcCCCCCCCChhHHHHHHhcCchHHHHHHHhhhccccccccccccccc
Q psy3476 734 KQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 790 (1417)
Q Consensus 734 ~~iL~~~gl~~~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~~~~r~rk~l~~~~ 790 (1417)
.+++...|.... ...+....+++.+|-...+..|. +.+ ..++.|.+.-.+.
T Consensus 615 ~~i~~~~g~~~~----~~~l~~l~~rl~~gv~~e~~~L~-qlp-~v~~~rar~L~~~ 665 (720)
T 2zj8_A 615 KEIAKVLGAYEI----VDYLETLRVRVKYGIREELIPLM-QLP-LVGRRRARALYNS 665 (720)
T ss_dssp HHHHHHHTCGGG----HHHHHHHHHHHHHTCCGGGGGGT-TST-TCCHHHHHHHHTT
T ss_pred HHHHHHcCcHHH----HHHHHHHHHHHHcCCCccchhhh-hCC-CCCHHHHHHHHHc
Confidence 556666665211 11244466677777665555554 222 2444444444433
No 5
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.3e-42 Score=440.40 Aligned_cols=211 Identities=24% Similarity=0.392 Sum_probs=199.3
Q ss_pred hhhhhHHHhhhccccccCCCcccccccHHHH-hhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHH
Q psy3476 794 IEEEEEEEEGERLESRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 872 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~pG~CyRLyt~~~~-~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A 872 (1417)
-+|++.+.||+|||||.++|.||+||++++| +.|.+++.|||+|++|++++|++++||++++..|+|++||+.+++.+|
T Consensus 415 p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a 494 (773)
T 2xau_A 415 PISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRA 494 (773)
T ss_dssp ECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHH
T ss_pred cCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHH
Confidence 3689999999999999999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhcccccccCCCCccC
Q psy3476 873 VRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDI 952 (1417)
Q Consensus 873 ~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~~~~~~~~~f~~ 952 (1417)
++.|..+||||++|+||++|+.|+.||+||++||||+.|+.++|++++++|||+|+.++++.++.+.+.+++.++..|.+
T Consensus 495 ~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~ 574 (773)
T 2xau_A 495 LEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAH 574 (773)
T ss_dssp HHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCC
T ss_pred HHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888889999999
Q ss_pred CCCCccccccccccc---h------hhHHHHhhhhccccchhhhhhh-ccccccCCCccccc
Q psy3476 953 PLGKMLVFGSMFHQI---D------TMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPL 1004 (1417)
Q Consensus 953 ~~gd~lt~l~~~~~~---~------~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~ 1004 (1417)
++|||+|++|+|++| . ..||.+||||+++|+++..++. |.+++++.++++.+
T Consensus 575 ~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~ 636 (773)
T 2xau_A 575 PDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNT 636 (773)
T ss_dssp TTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 999999999999988 2 6899999999999999999988 88777766665444
No 6
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=350.70 Aligned_cols=151 Identities=15% Similarity=0.205 Sum_probs=133.6
Q ss_pred cccCCC-CCCCCccchHHHHHHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhcccccc
Q psy3476 855 VRKFPF-LEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAID 933 (1417)
Q Consensus 855 ~~~f~~-l~~P~~~~l~~A~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~ 933 (1417)
...|+| +||||.+++.+|++.|+.+||||++|+||++|+.|+.||+||++||||+.|..++|++++++|||+||.++++
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f 84 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF 84 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCB
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCccc
Confidence 467899 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccccccCCCCccCCCCCccccccccccc-----hhhHHHHhhhhccccchhhhhhh-ccccccCCCcccccc
Q psy3476 934 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQI-----DTMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPLG 1005 (1417)
Q Consensus 934 ~~~~~~~~~~~~~~~~f~~~~gd~lt~l~~~~~~-----~~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~ 1005 (1417)
.++.+++..++.++..|.+++|||+|++|+|++| +..||.+||||+++|+++..++. |.+++++.++++.++
T Consensus 85 ~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~ 162 (270)
T 3i4u_A 85 YRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSC 162 (270)
T ss_dssp CCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred cCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 9999888899999999999999999999999998 36899999999999999999999 887776665544333
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=346.36 Aligned_cols=335 Identities=17% Similarity=0.222 Sum_probs=228.4
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHH
Q psy3476 28 LMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 28 ~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
+.+..+...-.+.+.+|.++++.+.++++++++||||||||++++.++++.. ..+++++.|+|.++.++++++..
T Consensus 51 ~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 130 (414)
T 3eiq_A 51 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMA 130 (414)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHH
Confidence 3444444566778999999999999999999999999999999988888753 35799999999999999887765
Q ss_pred HHccccCCeEEEEEeeccc-------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhh
Q psy3476 103 ETLSQYSNLVGYQIRFEKH-------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRK 175 (1417)
Q Consensus 103 e~~~~~g~~vGy~ir~e~~-------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (1417)
. +...+..++..+..... ....+.|+++|+|.|++.+..+
T Consensus 131 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-------------------------------- 177 (414)
T 3eiq_A 131 L-GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR-------------------------------- 177 (414)
T ss_dssp H-GGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT--------------------------------
T ss_pred H-hcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC--------------------------------
Confidence 3 44445555554433221 1245688888888887755321
Q ss_pred hhhhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccce
Q psy3476 176 KAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFL 255 (1417)
Q Consensus 176 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l 255 (1417)
T Consensus 178 -------------------------------------------------------------------------------- 177 (414)
T 3eiq_A 178 -------------------------------------------------------------------------------- 177 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCc
Q psy3476 256 LGVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHG 335 (1417)
Q Consensus 256 ~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~ 335 (1417)
...+.++++||+|||| +..+.
T Consensus 178 ----------------------------------------------------------~~~~~~~~~vViDEah-~~~~~ 198 (414)
T 3eiq_A 178 ----------------------------------------------------------YLSPKYIKMFVLDEAD-EMLSR 198 (414)
T ss_dssp ----------------------------------------------------------SSCSTTCCEEEECSHH-HHHHT
T ss_pred ----------------------------------------------------------CcccccCcEEEEECHH-Hhhcc
Confidence 0234568899999999 45566
Q ss_pred chHHHHHHHHhccCCCCcEEEEccCCCHHH--HHHHhccCceEEEeCCcccce---eEEeccccccccccccCCCCChHH
Q psy3476 336 DFLLGVIKCLLHSTAEVKIILMSATINIEL--FHTYFNRIAKIIKVPGRLYPI---QLEYHPIVELDRTKSEKLDPGPYI 410 (1417)
Q Consensus 336 d~ll~llk~l~~~r~~~qvIlmSATln~~~--~~~~f~~~~~vi~v~gr~~pv---~v~~~~~~~~~~~~~~~~~~~~~~ 410 (1417)
++...+...+...+++.++|+||||++.+. +...+..+...+.+.....+. ...+.... .......
T Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 269 (414)
T 3eiq_A 199 GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVE---------REEWKLD 269 (414)
T ss_dssp TTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECS---------SSTTHHH
T ss_pred CcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeC---------hHHhHHH
Confidence 677777777777888999999999996443 223232344444333222111 11111100 0011122
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa 490 (1417)
.+... +.....+++||||+++++++.+++.|.+ .++.+..+||++++++|..+++.|++|..+|||||+++
T Consensus 270 ~l~~~----~~~~~~~~~lvf~~~~~~~~~l~~~l~~-----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 340 (414)
T 3eiq_A 270 TLCDL----YETLTITQAVIFINTRRKVDWLTEKMHA-----RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 340 (414)
T ss_dssp HHHHH----HHSSCCSSCEEECSCHHHHHHHHHHHHT-----TTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSC
T ss_pred HHHHH----HHhCCCCcEEEEeCCHHHHHHHHHHHHh-----cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcc
Confidence 22222 2223467999999999999999999987 57889999999999999999999999999999999999
Q ss_pred hccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH---hhccCCCc
Q psy3476 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL---LAEYSTPE 566 (1417)
Q Consensus 491 e~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~---l~~~~~pE 566 (1417)
++|||+|++++||+ ||.+.+ ..+|.||+|||||.| +|.||.++++.+... +..+...+
T Consensus 341 ~~Gidip~v~~Vi~--------~~~p~s----------~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 402 (414)
T 3eiq_A 341 ARGIDVQQVSLVIN--------YDLPTN----------RENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS 402 (414)
T ss_dssp C--CCGGGCSCEEE--------SSCCSS----------THHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCC
T ss_pred ccCCCccCCCEEEE--------eCCCCC----------HHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCC
Confidence 99999999999999 777654 455669999999998 799999999877654 33444444
Q ss_pred cccc
Q psy3476 567 IRRV 570 (1417)
Q Consensus 567 I~r~ 570 (1417)
+...
T Consensus 403 ~~~~ 406 (414)
T 3eiq_A 403 IEEM 406 (414)
T ss_dssp CEEC
T ss_pred cccc
Confidence 4443
No 8
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.4e-34 Score=390.07 Aligned_cols=451 Identities=14% Similarity=0.112 Sum_probs=304.1
Q ss_pred cHHHHHHHHHHHh-cCCeEEEEcCCCcchhHHHHHHHHH----cCCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEE
Q psy3476 40 VAQYKQEIIDTVL-KERVVIIAGDTGCGKSTQIPQYLVQ----AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGY 114 (1417)
Q Consensus 40 ~~~~q~~il~~i~-~~~~~iI~a~TGsGKTt~ipq~ile----~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy 114 (1417)
..+.|.+++..+. .+++++|+||||||||+++..+|++ ....+++++.|+|..|.+.++.+.+.++..+|..||.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEE
Confidence 3567889999884 6789999999999999976666554 3456899999999999999999988888777777775
Q ss_pred EEeecc---cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhcccc
Q psy3476 115 QIRFEK---HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 191 (1417)
Q Consensus 115 ~ir~e~---~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 191 (1417)
..+..+ +...+..|++||++.+
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkl------------------------------------------------------- 1031 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKW------------------------------------------------------- 1031 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHH-------------------------------------------------------
T ss_pred EECCCCcchhhcCCCCEEEECHHHH-------------------------------------------------------
Confidence 332110 1112345556665543
Q ss_pred chhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccc
Q psy3476 192 AYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVA 271 (1417)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~ 271 (1417)
T Consensus 1032 -------------------------------------------------------------------------------- 1031 (1724)
T 4f92_B 1032 -------------------------------------------------------------------------------- 1031 (1724)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccc-cCcchHHHHHHHHh----
Q psy3476 272 ADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERH-LHGDFLLGVIKCLL---- 346 (1417)
Q Consensus 272 ~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~-l~~d~ll~llk~l~---- 346 (1417)
......+.....++++++||+||+|... ..+..+..++.++.
T Consensus 1032 ---------------------------------d~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~ 1078 (1724)
T 4f92_B 1032 ---------------------------------DILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISS 1078 (1724)
T ss_dssp ---------------------------------HHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHh
Confidence 3322222223456789999999999221 12233344443332
Q ss_pred ccCCCCcEEEEccCC-CHHHHHHHhccC-ce--EEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCC
Q psy3476 347 HSTAEVKIILMSATI-NIELFHTYFNRI-AK--IIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPR 422 (1417)
Q Consensus 347 ~~r~~~qvIlmSATl-n~~~~~~~f~~~-~~--vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 422 (1417)
...+++|+|+||||+ |++++++|++.. .. .+....|+.|++.+............ . ..........+.+.
T Consensus 1079 ~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~--~-~~~~~~~~~~i~~~--- 1152 (1724)
T 4f92_B 1079 QIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTR--L-LSMAKPVYHAITKH--- 1152 (1724)
T ss_dssp TTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHH--H-HTTHHHHHHHHHHH---
T ss_pred hcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhh--h-hhhcchHHHHHHHh---
Confidence 345789999999999 899999999632 22 34445677777765433222111000 0 00112223333333
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhc-----------------------------cCCcEEEEecCCCCHHHHHHHh
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEK-----------------------------SQGWIVLPLHSTLSLEEQDRVF 473 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~-----------------------------~~~~~V~~LHs~Ls~~eR~~v~ 473 (1417)
..++++||||++++.++.++..|...... .....|..+||||++++|..|+
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 44689999999999999999887543211 0123588999999999999999
Q ss_pred ccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEe
Q psy3476 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRL 550 (1417)
Q Consensus 474 ~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L 550 (1417)
+.|++|.++|||||+++++|||+|++++||.+ ...||.... ...+.|..++.||+|||||.| .|.|+.+
T Consensus 1233 ~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~----~~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll 1304 (1724)
T 4f92_B 1233 QLFSSGAIQVVVASRSLCWGMNVAAHLVIIMD----TQYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1304 (1724)
T ss_dssp HHHHHTSBCEEEEEGGGSSSCCCCBSEEEEEC----SEEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred HHHHCCCCeEEEEChHHHcCCCCCccEEEEec----CccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEE
Confidence 99999999999999999999999999999973 334665432 234789999999999999998 6999999
Q ss_pred cCHHHHHHhhcc-CCCcccc----cChHHHHHHHHhhCCC-CCc--------CC-----------CCCCCCC--------
Q psy3476 551 YSEEQYSLLAEY-STPEIRR----VSIDSLLLSLVCMGLG-DVR--------KF-----------PFLEAPP-------- 597 (1417)
Q Consensus 551 ~t~~~~~~l~~~-~~pEI~r----~~L~~~lL~lk~lgi~-~~~--------~f-----------~~l~pP~-------- 597 (1417)
+.+.+...+..+ ..|+... ..+...++..+..|.- +.. +| .-+...+
T Consensus 1305 ~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l 1384 (1724)
T 4f92_B 1305 CQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHL 1384 (1724)
T ss_dssp EEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHH
T ss_pred ecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHH
Confidence 877655543332 2333333 3455666666665532 111 11 0111111
Q ss_pred cchhHHHHHHHHhcCCCCC--CC--CcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCCh
Q psy3476 598 AENIESSVRSLTQHGAIDS--KE--RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDP 673 (1417)
Q Consensus 598 ~~~l~~Al~~L~~lGaId~--~~--~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~ 673 (1417)
.+.++.+++.|.+.|+|.. ++ .+|++|++++.++++|..++++..+....+. ...+..+++...+|.....+..
T Consensus 1385 ~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~--~~~~L~il~~a~ef~~i~~R~~ 1462 (1724)
T 4f92_B 1385 SELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTK--VRGLIEIISNAAEYENIPIRHH 1462 (1724)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCC--HHHHHHHHHTSGGGTTCCCCTT
T ss_pred HHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCC--HHHHHHHhcCCccccccccccc
Confidence 2357789999999999953 33 4799999999999999999999887665543 2234455666778877655554
Q ss_pred h
Q psy3476 674 D 674 (1417)
Q Consensus 674 ~ 674 (1417)
+
T Consensus 1463 E 1463 (1724)
T 4f92_B 1463 E 1463 (1724)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-34 Score=382.29 Aligned_cols=331 Identities=16% Similarity=0.156 Sum_probs=247.9
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
...+.+.+|.++++.+.++++++|+||||||||+++..++++. ...+++++.|+|.++.|.++++.+.++ .||
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~Vg 255 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-----DVG 255 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS-----SEE
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC-----Ccc
Confidence 3456789999999999999999999999999999988887765 246899999999999999999888764 577
Q ss_pred EEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccch
Q psy3476 114 YQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAY 193 (1417)
Q Consensus 114 y~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 193 (1417)
+ +.++...+..+.|+|+|+|+|++++..+
T Consensus 256 l-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~-------------------------------------------------- 284 (1108)
T 3l9o_A 256 L-MTGDITINPDAGCLVMTTEILRSMLYRG-------------------------------------------------- 284 (1108)
T ss_dssp E-ECSSCBCCCSCSEEEEEHHHHHHHHHHC--------------------------------------------------
T ss_pred E-EeCccccCCCCCEEEeChHHHHHHHHcC--------------------------------------------------
Confidence 7 4455556678999999999999876432
Q ss_pred hhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccccc
Q psy3476 194 EIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAAD 273 (1417)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~ 273 (1417)
T Consensus 285 -------------------------------------------------------------------------------- 284 (1108)
T 3l9o_A 285 -------------------------------------------------------------------------------- 284 (1108)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCc
Q psy3476 274 YFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVK 353 (1417)
Q Consensus 274 ~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~q 353 (1417)
...+.++++||||||| +..+.++...+...+...+++.|
T Consensus 285 ----------------------------------------~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~~~q 323 (1108)
T 3l9o_A 285 ----------------------------------------SEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVR 323 (1108)
T ss_dssp ----------------------------------------SSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCTTSE
T ss_pred ----------------------------------------ccccccCCEEEEhhhh-hccccchHHHHHHHHHhcCCCce
Confidence 0124467899999999 77777777777777777888999
Q ss_pred EEEEccCC-CHHHHHHHhc----cCceEEEeCCcccceeEEecccccccccc----c------------cCCCC------
Q psy3476 354 IILMSATI-NIELFHTYFN----RIAKIIKVPGRLYPIQLEYHPIVELDRTK----S------------EKLDP------ 406 (1417)
Q Consensus 354 vIlmSATl-n~~~~~~~f~----~~~~vi~v~gr~~pv~v~~~~~~~~~~~~----~------------~~~~~------ 406 (1417)
+|+||||+ +...+.+|+. ..+.++....++.|+..++.+........ . ..+..
T Consensus 324 vl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (1108)
T 3l9o_A 324 YVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDP 403 (1108)
T ss_dssp EEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--------
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccc
Confidence 99999999 6667787774 25778888889999876654322110000 0 00000
Q ss_pred --------------------ChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhcc--------------
Q psy3476 407 --------------------GPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKS-------------- 452 (1417)
Q Consensus 407 --------------------~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~-------------- 452 (1417)
.....+...+. .+.....+++||||+++++++.++..|.......
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~-~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~ 482 (1108)
T 3l9o_A 404 NSTDSRGKKGQTYKGGSAKGDAKGDIYKIVK-MIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNA 482 (1108)
T ss_dssp ---------------------CHHHHHHHHH-HHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGS
T ss_pred cccccccccccccccccccccchhHHHHHHH-HHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 00111222222 2222346799999999999999999875421110
Q ss_pred --------------------CCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCccccee
Q psy3476 453 --------------------QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMS 512 (1417)
Q Consensus 453 --------------------~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~ 512 (1417)
....+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 483 ~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~-------- 554 (1108)
T 3l9o_A 483 IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFT-------- 554 (1108)
T ss_dssp CTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEES--------
T ss_pred HhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEe--------
Confidence 0012899999999999999999999999999999999999999999999998
Q ss_pred cccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHH
Q psy3476 513 YDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEE 554 (1417)
Q Consensus 513 yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~ 554 (1417)
|+.+.+... ..|+|.++|.||+|||||.| +|.||.++++.
T Consensus 555 ~~~~~d~~~--~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 555 SVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CSEEESSSC--EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred cCcccCccc--cccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 444443333 34899999999999999999 79999998754
No 10
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.1e-34 Score=391.67 Aligned_cols=366 Identities=18% Similarity=0.203 Sum_probs=242.5
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccC---cchHHHHHHHH----hccCCCCcEEEEccCC-CHHHH
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLH---GDFLLGVIKCL----LHSTAEVKIILMSATI-NIELF 366 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~---~d~ll~llk~l----~~~r~~~qvIlmSATl-n~~~~ 366 (1417)
|++++||++|..+.........++++++||+||+| .++ +..+..++.++ ....+++|+|+||||+ |.+++
T Consensus 183 ~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH--~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dv 260 (1724)
T 4f92_B 183 QIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIH--LLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDV 260 (1724)
T ss_dssp SEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGG--GGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHH
T ss_pred CEEEECHHHHHHHHcCCccchhhcCcCEEEEecch--hcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHH
Confidence 34444555444333332223457789999999999 232 22344444333 2346789999999999 89999
Q ss_pred HHHhccC----ceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHH-hhCCCCCCCcEEEEeCCHHHHHHH
Q psy3476 367 HTYFNRI----AKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID-KKYPRTERGDVLIFMSGISEISSI 441 (1417)
Q Consensus 367 ~~~f~~~----~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~-~~~~~~~~g~iLVFl~~~~eie~l 441 (1417)
++|++.. ..++....|+.|++.++.......... .....-..+. .......++++||||+++++++.+
T Consensus 261 A~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~ 333 (1724)
T 4f92_B 261 ATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIK-------RFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKT 333 (1724)
T ss_dssp HHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHH-------HHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHH
T ss_pred HHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhh-------hhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHH
Confidence 9999542 123444556777766554322211100 0111111111 122224467999999999999999
Q ss_pred HHHHHhhhhc--------------------------------cCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 442 VRAAQEYNEK--------------------------------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 442 a~~L~~~~~~--------------------------------~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
++.|.+.... .-...|..+||||++++|..+++.|++|.++|||||++
T Consensus 334 A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsT 413 (1724)
T 4f92_B 334 ARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTAT 413 (1724)
T ss_dssp HHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHH
T ss_pred HHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcch
Confidence 9988653211 01234889999999999999999999999999999999
Q ss_pred hhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHH---HhhccC
Q psy3476 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYS---LLAEYS 563 (1417)
Q Consensus 490 ae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~---~l~~~~ 563 (1417)
+++|||+|++++||. ....||+..+ ...++|.+++.||+|||||.| .|.++.+.++++.. .+..-.
T Consensus 414 La~GVNlPa~~vVI~----~~~~~~~~~~----~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~ 485 (1724)
T 4f92_B 414 LAWGVNLPAHTVIIK----GTQVYSPEKG----RWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQ 485 (1724)
T ss_dssp HHHHSCCCBSEEEEE----CCEEEETTTT----EEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTC
T ss_pred hHhhCCCCCceEEEe----CCEEecCcCC----CcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCC
Confidence 999999999999996 2456777654 235789999999999999998 69999888765432 222111
Q ss_pred CC-c-ccccChHHHHHHHHhhCC-CCCc--------CC--------C--------------CCCCCCcchhHHHHHHHHh
Q psy3476 564 TP-E-IRRVSIDSLLLSLVCMGL-GDVR--------KF--------P--------------FLEAPPAENIESSVRSLTQ 610 (1417)
Q Consensus 564 ~p-E-I~r~~L~~~lL~lk~lgi-~~~~--------~f--------~--------------~l~pP~~~~l~~Al~~L~~ 610 (1417)
.| | -....+.+.+++.+.+|. .+.. +| | .++....+.+..++..|.+
T Consensus 486 ~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~ 565 (1724)
T 4f92_B 486 LPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDK 565 (1724)
T ss_dssp SCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 11 1 112245566666555552 2211 00 0 0111112347789999999
Q ss_pred cCCCCCC---C--CcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCChhHHHHH
Q psy3476 611 HGAIDSK---E--RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETAR 679 (1417)
Q Consensus 611 lGaId~~---~--~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r 679 (1417)
.|+|..+ + .+|++|+++|+++++|..++.+.....-.+.+ ..+..++|..++|.....++++..+..
T Consensus 566 ~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~--~~ll~~is~s~ef~~i~~R~~E~~~l~ 637 (1724)
T 4f92_B 566 NNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSE--IELFRVFSLSSEFKNITVREEEKLELQ 637 (1724)
T ss_dssp TTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCH--HHHHHHHHTCGGGTTCCCCGGGHHHHH
T ss_pred CCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCH--HHHHHHHhCChhhccCCcCHHHHHHHH
Confidence 9999533 2 48999999999999999999998776554443 345677788889988777776655443
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=9.4e-33 Score=327.32 Aligned_cols=319 Identities=18% Similarity=0.223 Sum_probs=233.1
Q ss_pred cCCCcHHHHHHHHHHHhcC--CeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 36 NSLPVAQYKQEIIDTVLKE--RVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~--~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
.--..+.+|.++++.+.++ +++++++|||||||+++..++++.. ..+++++.|+|.++.|+++++.+. +...
T Consensus 24 ~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~-~~~~ 102 (395)
T 3pey_A 24 KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEM-GKFT 102 (395)
T ss_dssp TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH-TTTS
T ss_pred CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHH-hccc
Confidence 3345678999999999887 8999999999999999888887752 357999999999999998876543 3333
Q ss_pred CCeEEEEEee--cccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhh
Q psy3476 109 SNLVGYQIRF--EKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKM 186 (1417)
Q Consensus 109 g~~vGy~ir~--e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (1417)
+..++..... +........|+++|++.+++.+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~------------------------------------------- 139 (395)
T 3pey_A 103 KITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRK------------------------------------------- 139 (395)
T ss_dssp CCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTT-------------------------------------------
T ss_pred CeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcC-------------------------------------------
Confidence 4444433321 2222345789999998887654322
Q ss_pred hccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCC
Q psy3476 187 LKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCG 266 (1417)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~ 266 (1417)
T Consensus 140 -------------------------------------------------------------------------------- 139 (395)
T 3pey_A 140 -------------------------------------------------------------------------------- 139 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHh
Q psy3476 267 GEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL 346 (1417)
Q Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~ 346 (1417)
...+.++++||+||||....+.++...+.....
T Consensus 140 -----------------------------------------------~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~ 172 (395)
T 3pey_A 140 -----------------------------------------------LMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKR 172 (395)
T ss_dssp -----------------------------------------------CBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHH
T ss_pred -----------------------------------------------CcccccCCEEEEEChhhhcCccccHHHHHHHHH
Confidence 023567899999999944433566666666666
Q ss_pred ccCCCCcEEEEccCCCH--HHHHHHhccCceEEEeCCcccce---eEEeccccccccccccCCCCChHHHHHHHHHhhCC
Q psy3476 347 HSTAEVKIILMSATINI--ELFHTYFNRIAKIIKVPGRLYPI---QLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP 421 (1417)
Q Consensus 347 ~~r~~~qvIlmSATln~--~~~~~~f~~~~~vi~v~gr~~pv---~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 421 (1417)
..+++.++++||||++. ..+...+..+...+.+.....+. ...+... .........+...+.
T Consensus 173 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~ 239 (395)
T 3pey_A 173 FLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC-------------KNEADKFDVLTELYG 239 (395)
T ss_dssp TSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEEC-------------SSHHHHHHHHHHHHT
T ss_pred hCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEc-------------CchHHHHHHHHHHHH
Confidence 67788999999999964 34444443444444443332211 1111110 011222333444444
Q ss_pred CCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEE
Q psy3476 422 RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 422 ~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~ 501 (1417)
....+++||||+++++++.+++.|++ .++.+..+||+++.++|..+++.|++|+.+|||||+++++|||+|++++
T Consensus 240 ~~~~~~~lvf~~~~~~~~~l~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~ 314 (395)
T 3pey_A 240 LMTIGSSIIFVATKKTANVLYGKLKS-----EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSM 314 (395)
T ss_dssp TTTSSEEEEECSCHHHHHHHHHHHHH-----TTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEE
T ss_pred hccCCCEEEEeCCHHHHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCE
Confidence 44578999999999999999999987 5678999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
||+ ||.|.. ...+.|..++.||+|||||.| +|.|+.+++..+
T Consensus 315 Vi~--------~~~p~~----~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 315 VVN--------YDLPTL----ANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp EEE--------SSCCBC----TTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred EEE--------cCCCCC----CcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 999 777652 233568899999999999998 699999997543
No 12
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.3e-32 Score=328.72 Aligned_cols=321 Identities=18% Similarity=0.197 Sum_probs=231.6
Q ss_pred cCCCcHHHHHHHHHHHhcC--CeEEEEcCCCcchhHHHHHHHHHcCC-----CcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 36 NSLPVAQYKQEIIDTVLKE--RVVIIAGDTGCGKSTQIPQYLVQAGF-----QRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~--~~~iI~a~TGsGKTt~ipq~ile~~~-----~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
.--..+.+|.++++.+.++ ++++++||||||||.++..++++... .+++++.|+|.++.++++++.+......
T Consensus 44 g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 44 GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 3345678999999999887 89999999999999998887776432 3799999999999999887766543333
Q ss_pred CCeEEEEEeeccc---ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhh
Q psy3476 109 SNLVGYQIRFEKH---RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRK 185 (1417)
Q Consensus 109 g~~vGy~ir~e~~---~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1417)
+..+++.+..... ......|+++|++.+++.+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~------------------------------------------ 161 (412)
T 3fht_A 124 ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL------------------------------------------ 161 (412)
T ss_dssp TCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS------------------------------------------
T ss_pred cceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc------------------------------------------
Confidence 5667766554332 2335689999999988766432
Q ss_pred hhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcC
Q psy3476 186 MLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHC 265 (1417)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~ 265 (1417)
T Consensus 162 -------------------------------------------------------------------------------- 161 (412)
T 3fht_A 162 -------------------------------------------------------------------------------- 161 (412)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHH
Q psy3476 266 GGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCL 345 (1417)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l 345 (1417)
....+.++++||+||+|.......+...+....
T Consensus 162 -----------------------------------------------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~ 194 (412)
T 3fht_A 162 -----------------------------------------------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQ 194 (412)
T ss_dssp -----------------------------------------------CSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHH
T ss_pred -----------------------------------------------CCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHH
Confidence 001235688999999993332345666666666
Q ss_pred hccCCCCcEEEEccCCCHH--HHHHHhccCceEEEeCCccc---ceeEEeccccccccccccCCCCChHHHHHHHHHhhC
Q psy3476 346 LHSTAEVKIILMSATINIE--LFHTYFNRIAKIIKVPGRLY---PIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKY 420 (1417)
Q Consensus 346 ~~~r~~~qvIlmSATln~~--~~~~~f~~~~~vi~v~gr~~---pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~ 420 (1417)
...+++.++++||||++.. .+...+..+...+.+..... .+...+.... ........+.+.+
T Consensus 195 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~ 261 (412)
T 3fht_A 195 RMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS-------------SRDEKFQALCNLY 261 (412)
T ss_dssp HTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECS-------------SHHHHHHHHHHHH
T ss_pred hhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcC-------------ChHHHHHHHHHHH
Confidence 6667889999999999653 33333324444444432211 1111111110 0111222222222
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeE
Q psy3476 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~ 500 (1417)
.....+++||||+++++++.+++.|.+ .++.+..+||+++.++|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 262 ~~~~~~~~lvf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 336 (412)
T 3fht_A 262 GAITIAQAMIFCHTRKTASWLAAELSK-----EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 336 (412)
T ss_dssp HHHSSSEEEEECSSHHHHHHHHHHHHH-----TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEE
T ss_pred hhcCCCCEEEEeCCHHHHHHHHHHHHh-----CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCC
Confidence 223467999999999999999999987 467899999999999999999999999999999999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
+||+ ||.|..... +.|..+|.||+|||||.| +|.|+.+++..+
T Consensus 337 ~Vi~--------~~~p~~~~~----~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 337 VVIN--------FDLPVDKDG----NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp EEEE--------SSCCBCSSS----SBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred EEEE--------ECCCCCCCC----CcchheeecccCcccCCCCCceEEEEEcChh
Confidence 9999 777654322 357788899999999998 699999998554
No 13
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.8e-34 Score=359.84 Aligned_cols=302 Identities=20% Similarity=0.214 Sum_probs=221.9
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHHHHHHccccC
Q psy3476 30 KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYS 109 (1417)
Q Consensus 30 ~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g 109 (1417)
+..+.|..+|++.+|++|+..+.++++++++||||||||+++++++++.+ .+++|++|+|++|.+++++++++++...|
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g-~~vLVl~PTReLA~Qia~~l~~~~g~~vg 286 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG-YKVLVLNPSVAATLGFGAYMSKAHGIDPN 286 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTT-CCEEEEESCHHHHHHHHHHHHHHHSCCCE
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCC-CeEEEEcchHHHHHHHHHHHHHHhCCCee
Confidence 44566888999999999999999999999999999999999999999865 38999999999999999999998877665
Q ss_pred CeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhcc
Q psy3476 110 NLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKA 189 (1417)
Q Consensus 110 ~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 189 (1417)
..+|+.. ....++|+|+|+|+|++. .
T Consensus 287 ~~vG~~~-----~~~~~~IlV~TPGrLl~~---~---------------------------------------------- 312 (666)
T 3o8b_A 287 IRTGVRT-----ITTGAPVTYSTYGKFLAD---G---------------------------------------------- 312 (666)
T ss_dssp EECSSCE-----ECCCCSEEEEEHHHHHHT---T----------------------------------------------
T ss_pred EEECcEe-----ccCCCCEEEECcHHHHhC---C----------------------------------------------
Confidence 5555432 356789999999987531 0
Q ss_pred ccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcc
Q psy3476 190 DNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEI 269 (1417)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~ 269 (1417)
T Consensus 313 -------------------------------------------------------------------------------- 312 (666)
T 3o8b_A 313 -------------------------------------------------------------------------------- 312 (666)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccC
Q psy3476 270 VAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST 349 (1417)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r 349 (1417)
...++++++|||||||++ +.++...+...+...+
T Consensus 313 --------------------------------------------~l~l~~l~~lVlDEAH~l--~~~~~~~l~~Il~~l~ 346 (666)
T 3o8b_A 313 --------------------------------------------GCSGGAYDIIICDECHST--DSTTILGIGTVLDQAE 346 (666)
T ss_dssp --------------------------------------------SCCTTSCSEEEETTTTCC--SHHHHHHHHHHHHHTT
T ss_pred --------------------------------------------CcccCcccEEEEccchhc--CccHHHHHHHHHHhhh
Confidence 023567899999999954 4455444444333333
Q ss_pred --CCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCc
Q psy3476 350 --AEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427 (1417)
Q Consensus 350 --~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~ 427 (1417)
....+++||||++.. +....+ ...++.+.+..... ... .... + + ....++
T Consensus 347 ~~~~~llil~SAT~~~~-----i~~~~p------~i~~v~~~~~~~i~--~~~-~~~~----------l-~---~~~~~~ 398 (666)
T 3o8b_A 347 TAGARLVVLATATPPGS-----VTVPHP------NIEEVALSNTGEIP--FYG-KAIP----------I-E---AIRGGR 398 (666)
T ss_dssp TTTCSEEEEEESSCTTC-----CCCCCT------TEEEEECBSCSSEE--ETT-EEEC----------G-G---GSSSSE
T ss_pred hcCCceEEEECCCCCcc-----cccCCc------ceEEEeecccchhH--HHH-hhhh----------h-h---hccCCc
Confidence 333478899999631 110000 11111111111100 000 0000 0 1 124789
Q ss_pred EEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCc
Q psy3476 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGK 507 (1417)
Q Consensus 428 iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~ 507 (1417)
+||||+++++++.+++.|++ .++.+..+||+|++++ |+++..+||||||++|+||||| |++|||+|+
T Consensus 399 vLVFv~Tr~~ae~la~~L~~-----~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl 465 (666)
T 3o8b_A 399 HLIFCHSKKKCDELAAKLSG-----LGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNT 465 (666)
T ss_dssp EEEECSCHHHHHHHHHHHHT-----TTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCE
T ss_pred EEEEeCCHHHHHHHHHHHHh-----CCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCc
Confidence 99999999999999999987 5788999999999864 4556679999999999999997 999999998
Q ss_pred cccee----cccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHH
Q psy3476 508 VKEMS----YDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555 (1417)
Q Consensus 508 ~k~~~----yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~ 555 (1417)
.+..+ ||+..++.. ...|+|.++|.||+|||||..+|. |.||++.+
T Consensus 466 ~~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e 515 (666)
T 3o8b_A 466 CVTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGE 515 (666)
T ss_dssp EEEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESCCCC
T ss_pred cccccccccccccccccc-ccCcCCHHHHHHHhccCCCCCCCE-EEEEecch
Confidence 88664 445555543 357999999999999999944899 99998654
No 14
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.7e-32 Score=330.09 Aligned_cols=306 Identities=16% Similarity=0.217 Sum_probs=222.2
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc----C------CCcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA----G------FQRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~----~------~~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
..+.+|.+++..+.++++++++||||||||.++..++++. . ..+++++.|+|.+|.|+++++.+- ....
T Consensus 78 ~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~-~~~~ 156 (434)
T 2db3_A 78 IPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF-AFES 156 (434)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH-TTTS
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH-hccC
Confidence 3568899999999999999999999999999866655432 1 347999999999999998866543 3333
Q ss_pred CCeEEEEEeecc------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhH
Q psy3476 109 SNLVGYQIRFEK------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182 (1417)
Q Consensus 109 g~~vGy~ir~e~------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1417)
+..++....... .......|+++|+|.|++.+...
T Consensus 157 ~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--------------------------------------- 197 (434)
T 2db3_A 157 YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT--------------------------------------- 197 (434)
T ss_dssp SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT---------------------------------------
T ss_pred CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC---------------------------------------
Confidence 333433222111 11235678888888777654321
Q ss_pred HhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCC
Q psy3476 183 RRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPP 262 (1417)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~ 262 (1417)
T Consensus 198 -------------------------------------------------------------------------------- 197 (434)
T 2db3_A 198 -------------------------------------------------------------------------------- 197 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHH
Q psy3476 263 LHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVI 342 (1417)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ll 342 (1417)
...+.+++++|+|||| +.++.+|...+.
T Consensus 198 ---------------------------------------------------~~~l~~~~~lVlDEah-~~~~~gf~~~~~ 225 (434)
T 2db3_A 198 ---------------------------------------------------FITFEDTRFVVLDEAD-RMLDMGFSEDMR 225 (434)
T ss_dssp ---------------------------------------------------SCCCTTCCEEEEETHH-HHTSTTTHHHHH
T ss_pred ---------------------------------------------------CcccccCCeEEEccHh-hhhccCcHHHHH
Confidence 0236678999999999 778888888777
Q ss_pred HHHhcc--CCCCcEEEEccCCCH--HHHHHHhccCceEEEeCCc---ccceeEEeccccccccccccCCCCChHHHHHHH
Q psy3476 343 KCLLHS--TAEVKIILMSATINI--ELFHTYFNRIAKIIKVPGR---LYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI 415 (1417)
Q Consensus 343 k~l~~~--r~~~qvIlmSATln~--~~~~~~f~~~~~vi~v~gr---~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~ 415 (1417)
+.+... +++.|+++||||++. +.+...+..+...+.+... ...+...+..... ......+++.
T Consensus 226 ~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~----------~~k~~~l~~~ 295 (434)
T 2db3_A 226 RIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK----------YAKRSKLIEI 295 (434)
T ss_dssp HHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG----------GGHHHHHHHH
T ss_pred HHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCc----------HHHHHHHHHH
Confidence 776553 678999999999964 3444333244444444321 1122222211110 0112334444
Q ss_pred HHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCC
Q psy3476 416 IDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495 (1417)
Q Consensus 416 l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GId 495 (1417)
+.+. .+++||||+++++++.+++.|.+ .++.+..+||++++++|..+++.|++|+.+|||||+++++|||
T Consensus 296 l~~~-----~~~~lVF~~t~~~a~~l~~~L~~-----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlD 365 (434)
T 2db3_A 296 LSEQ-----ADGTIVFVETKRGADFLASFLSE-----KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLD 365 (434)
T ss_dssp HHHC-----CTTEEEECSSHHHHHHHHHHHHH-----TTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCC
T ss_pred HHhC-----CCCEEEEEeCcHHHHHHHHHHHh-----CCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCC
Confidence 4332 23499999999999999999987 5788999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHH
Q psy3476 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEE 554 (1417)
Q Consensus 496 IP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~ 554 (1417)
+|++++||+ ||.|.+. .+|.||+|||||.| +|.|+.+++++
T Consensus 366 i~~v~~VI~--------~d~p~~~----------~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 366 IKNIKHVIN--------YDMPSKI----------DDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp CTTCCEEEE--------SSCCSSH----------HHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred cccCCEEEE--------ECCCCCH----------HHHHHHhcccccCCCCCEEEEEEecc
Confidence 999999999 8887654 45559999999999 79999999843
No 15
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=3.4e-33 Score=368.67 Aligned_cols=326 Identities=15% Similarity=0.151 Sum_probs=239.7
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH--cCCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEE
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ--AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQ 115 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile--~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ 115 (1417)
.+.+.+|.++++.+.++++++|+||||||||+.....+.. ....+++|+.|+|.++.++++++.+..+ |..||..
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~~v~~l 114 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD---DVNIGLI 114 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC-----CCEEEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC---CCeEEEE
Confidence 4478999999999999999999999999999753333332 2346799999999999999888876542 3456653
Q ss_pred EeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccchhh
Q psy3476 116 IRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 195 (1417)
Q Consensus 116 ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 195 (1417)
. .+......++|+|+|+|+|++.+..+
T Consensus 115 ~-G~~~~~~~~~IlV~Tpe~L~~~l~~~---------------------------------------------------- 141 (997)
T 4a4z_A 115 T-GDVQINPDANCLIMTTEILRSMLYRG---------------------------------------------------- 141 (997)
T ss_dssp C-SSCEECTTSSEEEEEHHHHHHHHHHT----------------------------------------------------
T ss_pred e-CCCccCCCCCEEEECHHHHHHHHHhC----------------------------------------------------
Confidence 3 33345567899999999998765322
Q ss_pred hhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccccccc
Q psy3476 196 EEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADYF 275 (1417)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~~~ 275 (1417)
T Consensus 142 -------------------------------------------------------------------------------- 141 (997)
T 4a4z_A 142 -------------------------------------------------------------------------------- 141 (997)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEE
Q psy3476 276 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKII 355 (1417)
Q Consensus 276 l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvI 355 (1417)
...+.++++||||||| +..+.++...+...+...+++.++|
T Consensus 142 --------------------------------------~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iI 182 (997)
T 4a4z_A 142 --------------------------------------ADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFI 182 (997)
T ss_dssp --------------------------------------CSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEE
T ss_pred --------------------------------------chhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEE
Confidence 0234568899999999 6666666666666677778899999
Q ss_pred EEccCC-CHHHHHHHhc----cCceEEEeCCcccceeEEeccccccccccc-----------------------------
Q psy3476 356 LMSATI-NIELFHTYFN----RIAKIIKVPGRLYPIQLEYHPIVELDRTKS----------------------------- 401 (1417)
Q Consensus 356 lmSATl-n~~~~~~~f~----~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~----------------------------- 401 (1417)
+||||+ |...|.+|+. ....++..+.|++|+..++.+.........
T Consensus 183 lLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (997)
T 4a4z_A 183 LLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKT 262 (997)
T ss_dssp EEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------
T ss_pred EEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccc
Confidence 999999 7889999996 356788889999998866543110000000
Q ss_pred ------------------------------------------------------cCCCCChHHHHHHHHHhhCCCCCCCc
Q psy3476 402 ------------------------------------------------------EKLDPGPYIRILSIIDKKYPRTERGD 427 (1417)
Q Consensus 402 ------------------------------------------------------~~~~~~~~~~il~~l~~~~~~~~~g~ 427 (1417)
.......+..++..+.. ...++
T Consensus 263 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~----~~~~~ 338 (997)
T 4a4z_A 263 DNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK----RELLP 338 (997)
T ss_dssp ------------------------------------------------------CCCCTTHHHHHHHHHHH----TTCCS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHh----CCCCC
Confidence 00011112333333332 34679
Q ss_pred EEEEeCCHHHHHHHHHHHHhhhhc----------------------------------cCCcEEEEecCCCCHHHHHHHh
Q psy3476 428 VLIFMSGISEISSIVRAAQEYNEK----------------------------------SQGWIVLPLHSTLSLEEQDRVF 473 (1417)
Q Consensus 428 iLVFl~~~~eie~la~~L~~~~~~----------------------------------~~~~~V~~LHs~Ls~~eR~~v~ 473 (1417)
+||||+++++|+.+++.|....-. .....+..+||+|++.+|..++
T Consensus 339 ~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~ 418 (997)
T 4a4z_A 339 MVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 418 (997)
T ss_dssp EEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHH
Confidence 999999999999999888541100 0122588999999999999999
Q ss_pred ccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEe
Q psy3476 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRL 550 (1417)
Q Consensus 474 ~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L 550 (1417)
+.|++|.++|||||+++++|||+|++.+|+. +.. .||.. ...|+|..+|.||+|||||.| +|.||.+
T Consensus 419 ~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~-~~~---k~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l 488 (997)
T 4a4z_A 419 ILFSKGFIKVLFATETFAMGLNLPTRTVIFS-SIR---KHDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVM 488 (997)
T ss_dssp HHHHTTCCSEEEECTHHHHSCCCCCSEEEES-CSE---EEETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEE
T ss_pred HHHHCCCCcEEEEchHhhCCCCCCCceEEEe-ccc---cccCc------cCCCCCHHHHhHHhcccccCCCCcceEEEEe
Confidence 9999999999999999999999999777774 322 24432 235899999999999999988 7999999
Q ss_pred cC
Q psy3476 551 YS 552 (1417)
Q Consensus 551 ~t 552 (1417)
+.
T Consensus 489 ~~ 490 (997)
T 4a4z_A 489 AY 490 (997)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 16
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.1e-32 Score=323.19 Aligned_cols=311 Identities=18% Similarity=0.229 Sum_probs=224.0
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
..+.+|.++++.+.+++.+++++|||||||+++..++++.. ..++++..|+|.++.++++++... ....|..++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~-~~~~~~~~~ 121 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTL-GKHCGISCM 121 (400)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH-TTTTTCCEE
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHH-hcccCceEE
Confidence 36899999999999999999999999999998887777642 347999999999999998876553 334455554
Q ss_pred EEEeecc------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhh
Q psy3476 114 YQIRFEK------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKML 187 (1417)
Q Consensus 114 y~ir~e~------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (1417)
....... .......|+++|++.+++.+...
T Consensus 122 ~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-------------------------------------------- 157 (400)
T 1s2m_A 122 VTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK-------------------------------------------- 157 (400)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT--------------------------------------------
T ss_pred EEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC--------------------------------------------
Confidence 4332211 11245678888887776544221
Q ss_pred ccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCC
Q psy3476 188 KADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGG 267 (1417)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~ 267 (1417)
T Consensus 158 -------------------------------------------------------------------------------- 157 (400)
T 1s2m_A 158 -------------------------------------------------------------------------------- 157 (400)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhc
Q psy3476 268 EIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 347 (1417)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~ 347 (1417)
...+.++++||+||+| +..+.++...+...+..
T Consensus 158 ----------------------------------------------~~~~~~~~~vIiDEaH-~~~~~~~~~~~~~i~~~ 190 (400)
T 1s2m_A 158 ----------------------------------------------VADLSDCSLFIMDEAD-KMLSRDFKTIIEQILSF 190 (400)
T ss_dssp ----------------------------------------------CSCCTTCCEEEEESHH-HHSSHHHHHHHHHHHTT
T ss_pred ----------------------------------------------CcccccCCEEEEeCch-HhhhhchHHHHHHHHHh
Confidence 0235678999999999 55666666655555555
Q ss_pred cCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCccc--ceeEEeccccccccccccCCCCChHHHHHHHHHhhCCC
Q psy3476 348 STAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLY--PIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPR 422 (1417)
Q Consensus 348 ~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~--pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 422 (1417)
.++..++++||||++.. .+..++. ....+.+..... .+...+.... .......+..+.+.
T Consensus 191 ~~~~~~~i~lSAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~k~~~l~~~~~~--- 255 (400)
T 1s2m_A 191 LPPTHQSLLFSATFPLTVKEFMVKHLH-KPYEINLMEELTLKGITQYYAFVE-----------ERQKLHCLNTLFSK--- 255 (400)
T ss_dssp SCSSCEEEEEESCCCHHHHHHHHHHCS-SCEEESCCSSCBCTTEEEEEEECC-----------GGGHHHHHHHHHHH---
T ss_pred CCcCceEEEEEecCCHHHHHHHHHHcC-CCeEEEeccccccCCceeEEEEec-----------hhhHHHHHHHHHhh---
Confidence 66789999999999743 3344442 222222222111 1111111100 01111122222222
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFV 502 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~V 502 (1417)
...+++||||+++++++.+++.|.+ .++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 256 ~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~V 330 (400)
T 1s2m_A 256 LQINQAIIFCNSTNRVELLAKKITD-----LGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV 330 (400)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHH-----HTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEE
T ss_pred cCCCcEEEEEecHHHHHHHHHHHHh-----cCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEE
Confidence 3467999999999999999999987 46789999999999999999999999999999999999999999999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
|+ ||.+. |..++.||+|||||.| +|.|+.++++++...+
T Consensus 331 i~--------~~~p~----------s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~ 370 (400)
T 1s2m_A 331 IN--------FDFPK----------TAETYLHRIGRSGRFGHLGLAINLINWNDRFNL 370 (400)
T ss_dssp EE--------SSCCS----------SHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHH
T ss_pred EE--------eCCCC----------CHHHHHHhcchhcCCCCCceEEEEeccchHHHH
Confidence 99 77664 5566679999999998 8999999998876543
No 17
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.7e-32 Score=328.59 Aligned_cols=312 Identities=17% Similarity=0.241 Sum_probs=226.1
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
..+.+|.++++.+.+++++++++|||||||.++..++++.. ..++++..|+|.++.|+++++.+ ++...+..++
T Consensus 59 ~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 137 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLA-LGDYMNVQCH 137 (410)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHH-HhccCCeEEE
Confidence 46789999999999999999999999999999888887642 35799999999999999887755 3344444554
Q ss_pred EEEeeccc------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhh
Q psy3476 114 YQIRFEKH------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKML 187 (1417)
Q Consensus 114 y~ir~e~~------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (1417)
..+..... ......|+++|+|.|++.+...
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~-------------------------------------------- 173 (410)
T 2j0s_A 138 ACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR-------------------------------------------- 173 (410)
T ss_dssp EECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT--------------------------------------------
T ss_pred EEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC--------------------------------------------
Confidence 43322211 1123467777777766554321
Q ss_pred ccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCC
Q psy3476 188 KADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGG 267 (1417)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~ 267 (1417)
T Consensus 174 -------------------------------------------------------------------------------- 173 (410)
T 2j0s_A 174 -------------------------------------------------------------------------------- 173 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhc
Q psy3476 268 EIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 347 (1417)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~ 347 (1417)
...+.++++||+||+| +..+.++...+...+..
T Consensus 174 ----------------------------------------------~~~~~~~~~vViDEah-~~~~~~~~~~~~~i~~~ 206 (410)
T 2j0s_A 174 ----------------------------------------------SLRTRAIKMLVLDEAD-EMLNKGFKEQIYDVYRY 206 (410)
T ss_dssp ----------------------------------------------SSCCTTCCEEEEETHH-HHTSTTTHHHHHHHHTT
T ss_pred ----------------------------------------------CccHhheeEEEEccHH-HHHhhhhHHHHHHHHHh
Confidence 0235678999999999 56666777777777777
Q ss_pred cCCCCcEEEEccCCCHHHH---HHHhccCceEEEeCCccc---ceeEEeccccccccccccCCCCChHHHHHHHHHhhCC
Q psy3476 348 STAEVKIILMSATINIELF---HTYFNRIAKIIKVPGRLY---PIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP 421 (1417)
Q Consensus 348 ~r~~~qvIlmSATln~~~~---~~~f~~~~~vi~v~gr~~---pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 421 (1417)
.+++.++++||||++.+.. ..++ .+...+.+..... .+...+..... .......+...+...
T Consensus 207 ~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~~~~~~-- 274 (410)
T 2j0s_A 207 LPPATQVVLISATLPHEILEMTNKFM-TDPIRILVKRDELTLEGIKQFFVAVER---------EEWKFDTLCDLYDTL-- 274 (410)
T ss_dssp SCTTCEEEEEESCCCHHHHTTGGGTC-SSCEEECCCGGGCSCTTEEEEEEEESS---------TTHHHHHHHHHHHHH--
T ss_pred CccCceEEEEEcCCCHHHHHHHHHHc-CCCEEEEecCccccCCCceEEEEEeCc---------HHhHHHHHHHHHHhc--
Confidence 7788999999999975422 2333 2333333222111 11111111100 000122333333332
Q ss_pred CCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEE
Q psy3476 422 RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 422 ~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~ 501 (1417)
..+++||||+++++++.+++.|.+ .++.+..+||++++++|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 275 --~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 275 --TITQAVIFCNTKRKVDWLTEKMRE-----ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347 (410)
T ss_dssp --TSSEEEEECSSHHHHHHHHHHHHH-----TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEE
T ss_pred --CCCcEEEEEcCHHHHHHHHHHHHh-----CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCE
Confidence 356899999999999999999987 5678999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
||+ ||.|. |..+|.||+||+||.| +|.|+.++++.+...+
T Consensus 348 Vi~--------~~~p~----------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~ 388 (410)
T 2j0s_A 348 IIN--------YDLPN----------NRELYIHRIGRSGRYGRKGVAINFVKNDDIRIL 388 (410)
T ss_dssp EEE--------SSCCS----------SHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHH
T ss_pred EEE--------ECCCC----------CHHHHHHhcccccCCCCceEEEEEecHHHHHHH
Confidence 999 88765 4556669999999998 8999999998876543
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-31 Score=315.12 Aligned_cols=314 Identities=18% Similarity=0.241 Sum_probs=226.6
Q ss_pred HhcCCCcHHHHHHHHHHHhcC-CeEEEEcCCCcchhHHHHHHHHHcC----CCcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 34 TQNSLPVAQYKQEIIDTVLKE-RVVIIAGDTGCGKSTQIPQYLVQAG----FQRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 34 ~r~~lp~~~~q~~il~~i~~~-~~~iI~a~TGsGKTt~ipq~ile~~----~~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
...--..+.+|.++++.+.++ +++++.||||||||+++..++++.. ..+++++.|++.++.++++++....+. .
T Consensus 23 ~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~ 101 (367)
T 1hv8_A 23 NKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGN-K 101 (367)
T ss_dssp HHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS-S
T ss_pred HcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCC-C
Confidence 333345678999999988877 7999999999999999888877643 357999999999999999888776543 2
Q ss_pred CCeEEEEEeeccc-----ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHH
Q psy3476 109 SNLVGYQIRFEKH-----RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKR 183 (1417)
Q Consensus 109 g~~vGy~ir~e~~-----~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1417)
+..++........ ......|+++|++.+++.+...
T Consensus 102 ~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~---------------------------------------- 141 (367)
T 1hv8_A 102 NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRG---------------------------------------- 141 (367)
T ss_dssp CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTT----------------------------------------
T ss_pred CceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcC----------------------------------------
Confidence 2233322111110 1124567777777666543221
Q ss_pred hhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCC
Q psy3476 184 RKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPL 263 (1417)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~ 263 (1417)
T Consensus 142 -------------------------------------------------------------------------------- 141 (367)
T 1hv8_A 142 -------------------------------------------------------------------------------- 141 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHH
Q psy3476 264 HCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIK 343 (1417)
Q Consensus 264 ~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk 343 (1417)
...+.++++||+||+| +..+.++...+.+
T Consensus 142 --------------------------------------------------~~~~~~~~~iIiDEah-~~~~~~~~~~~~~ 170 (367)
T 1hv8_A 142 --------------------------------------------------TLNLKNVKYFILDEAD-EMLNMGFIKDVEK 170 (367)
T ss_dssp --------------------------------------------------CSCTTSCCEEEEETHH-HHHTTTTHHHHHH
T ss_pred --------------------------------------------------CcccccCCEEEEeCch-HhhhhchHHHHHH
Confidence 0235678999999999 4455567666777
Q ss_pred HHhccCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhC
Q psy3476 344 CLLHSTAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKY 420 (1417)
Q Consensus 344 ~l~~~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~ 420 (1417)
.+...+++.++++||||++.+ .+..++ .+...+..... ..+...+...... .....+.+.+
T Consensus 171 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~~l~~~l 234 (367)
T 1hv8_A 171 ILNACNKDKRILLFSATMPREILNLAKKYM-GDYSFIKAKIN-ANIEQSYVEVNEN--------------ERFEALCRLL 234 (367)
T ss_dssp HHHTSCSSCEEEEECSSCCHHHHHHHHHHC-CSEEEEECCSS-SSSEEEEEECCGG--------------GHHHHHHHHH
T ss_pred HHHhCCCCceEEEEeeccCHHHHHHHHHHc-CCCeEEEecCC-CCceEEEEEeChH--------------HHHHHHHHHH
Confidence 666677889999999999754 334555 34444333221 2222222211110 1122222333
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeE
Q psy3476 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~ 500 (1417)
. ..++++||||+++++++.+++.|.+ .++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 235 ~-~~~~~~lvf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 235 K-NKEFYGLVFCKTKRDTKELASMLRD-----IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp C-STTCCEEEECSSHHHHHHHHHHHHH-----TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred h-cCCCcEEEEECCHHHHHHHHHHHHh-----cCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 2 4567899999999999999999987 567899999999999999999999999999999999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
+||+ |+.+. |..++.||+|||||.| +|.|+.++++.++..+
T Consensus 309 ~Vi~--------~~~~~----------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 350 (367)
T 1hv8_A 309 CVIN--------YHLPQ----------NPESYMHRIGRTGRAGKKGKAISIINRREYKKL 350 (367)
T ss_dssp EEEE--------SSCCS----------CHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHH
T ss_pred EEEE--------ecCCC----------CHHHhhhcccccccCCCccEEEEEEcHHHHHHH
Confidence 9999 66654 5666779999999998 8999999998877654
No 19
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=6.3e-33 Score=339.25 Aligned_cols=295 Identities=19% Similarity=0.220 Sum_probs=204.9
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---CCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEEeecc
Q psy3476 44 KQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120 (1417)
Q Consensus 44 q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ir~e~ 120 (1417)
+....+.+.++++++|+||||||||++++.++++. ...+++|++|+|.+|.++++++. |..+++......
T Consensus 11 ~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~ 83 (459)
T 2z83_A 11 GRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQ 83 (459)
T ss_dssp ----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC----
T ss_pred HHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccc
Confidence 33345677889999999999999999977776653 33689999999999999887764 455555443322
Q ss_pred -cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccchhhhhHH
Q psy3476 121 -HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEE 199 (1417)
Q Consensus 121 -~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 199 (1417)
..++...+.++|.|.+.+.+..+
T Consensus 84 ~~~t~~~~i~~~~~~~l~~~l~~~-------------------------------------------------------- 107 (459)
T 2z83_A 84 REHQGNEIVDVMCHATLTHRLMSP-------------------------------------------------------- 107 (459)
T ss_dssp ----CCCSEEEEEHHHHHHHHHSC--------------------------------------------------------
T ss_pred cCCCCCcEEEEEchHHHHHHhhcc--------------------------------------------------------
Confidence 12345567777777766654332
Q ss_pred HHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccccccccccc
Q psy3476 200 EEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADYFLSSY 279 (1417)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~~~l~~~ 279 (1417)
T Consensus 108 -------------------------------------------------------------------------------- 107 (459)
T 2z83_A 108 -------------------------------------------------------------------------------- 107 (459)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEcc
Q psy3476 280 DVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSA 359 (1417)
Q Consensus 280 ~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSA 359 (1417)
..++++++|||||||++....++..+++..... +++.|+|+|||
T Consensus 108 -----------------------------------~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SA 151 (459)
T 2z83_A 108 -----------------------------------NRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTA 151 (459)
T ss_dssp -----------------------------------C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECS
T ss_pred -----------------------------------ccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEc
Confidence 346789999999999775555555566555433 46899999999
Q ss_pred CCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHH
Q psy3476 360 TINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEIS 439 (1417)
Q Consensus 360 Tln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie 439 (1417)
|++.+. ..+...+.++..+. ...+.... . .....+.+ .++++||||+++++++
T Consensus 152 T~~~~~-~~~~~~~~pi~~~~----------~~~~~~~~------~-----~~~~~l~~-----~~~~~LVF~~s~~~~~ 204 (459)
T 2z83_A 152 TPPGTT-DPFPDSNAPIHDLQ----------DEIPDRAW------S-----SGYEWITE-----YAGKTVWFVASVKMGN 204 (459)
T ss_dssp SCTTCC-CSSCCCSSCEEEEE----------CCCCSSCC------S-----SCCHHHHH-----CCSCEEEECSCHHHHH
T ss_pred CCCcch-hhhccCCCCeEEec----------ccCCcchh------H-----HHHHHHHh-----cCCCEEEEeCChHHHH
Confidence 996321 11111122322211 00000000 0 01122222 2679999999999999
Q ss_pred HHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecc--cCC
Q psy3476 440 SIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYD--VTA 517 (1417)
Q Consensus 440 ~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD--~~~ 517 (1417)
.+++.|.. .++.+..+||. +|..+++.|++|+++|||||+++++|||||+ ++|||+|+.+...++ ...
T Consensus 205 ~l~~~L~~-----~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~ 274 (459)
T 2z83_A 205 EIAMCLQR-----AGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEG 274 (459)
T ss_dssp HHHHHHHH-----TTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSC
T ss_pred HHHHHHHh-----cCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccccc
Confidence 99999987 47889999995 7889999999999999999999999999999 999999988877765 222
Q ss_pred CccccceeecCHhhHHhhcCcCCCCC--CCeEEEecCHH
Q psy3476 518 KMSTLQEFWISKASAEQRKGRAGRTG--PGVCYRLYSEE 554 (1417)
Q Consensus 518 ~~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy~L~t~~ 554 (1417)
.+..+...|.|.++|.||+|||||.| +|.||.+++..
T Consensus 275 ~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 275 RVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 23232448999999999999999998 89999999764
No 20
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=321.91 Aligned_cols=205 Identities=19% Similarity=0.281 Sum_probs=144.9
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhc--cC--CCCcEEEEccCCCH--HHHH-HHhccCceEEEeCCcc---cc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH--ST--AEVKIILMSATINI--ELFH-TYFNRIAKIIKVPGRL---YP 385 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~--~r--~~~qvIlmSATln~--~~~~-~~f~~~~~vi~v~gr~---~p 385 (1417)
.+.++++||+|||| +..+.++...+...+.. .+ ...++++||||++. +.+. .++ .+...+.+.... ..
T Consensus 172 ~~~~~~~iViDEah-~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (417)
T 2i4i_A 172 GLDFCKYLVLDEAD-RMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL-DEYIFLAVGRVGSTSEN 249 (417)
T ss_dssp CCTTCCEEEESSHH-HHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC-SSCEEEEEC----CCSS
T ss_pred ChhhCcEEEEEChh-HhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc-CCCEEEEeCCCCCCccC
Confidence 35678999999999 55555566665555443 22 26789999999964 3333 444 333333332211 11
Q ss_pred eeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCC
Q psy3476 386 IQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLS 465 (1417)
Q Consensus 386 v~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls 465 (1417)
+...+..... ......+.+.+.. . ..++++||||+++++++.+++.|.+ .++.+..+||+++
T Consensus 250 i~~~~~~~~~----------~~~~~~l~~~l~~-~--~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~~h~~~~ 311 (417)
T 2i4i_A 250 ITQKVVWVEE----------SDKRSFLLDLLNA-T--GKDSLTLVFVETKKGADSLEDFLYH-----EGYACTSIHGDRS 311 (417)
T ss_dssp EEEEEEECCG----------GGHHHHHHHHHHT-C--CTTCEEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTSC
T ss_pred ceEEEEEecc----------HhHHHHHHHHHHh-c--CCCCeEEEEECCHHHHHHHHHHHHH-----CCCCeeEecCCCC
Confidence 1111111100 0112223333332 2 3467899999999999999999987 5788999999999
Q ss_pred HHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-C
Q psy3476 466 LEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-P 544 (1417)
Q Consensus 466 ~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~ 544 (1417)
+++|..+++.|++|+.+|||||+++++|||+|++++||+ ||+|. |..+|.||+|||||.| +
T Consensus 312 ~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~--------~~~p~----------s~~~~~Qr~GR~gR~g~~ 373 (417)
T 2i4i_A 312 QRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FDLPS----------DIEEYVHRIGRTGRVGNL 373 (417)
T ss_dssp HHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE--------SSCCS----------SHHHHHHHHTTBCC--CC
T ss_pred HHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------EcCCC----------CHHHHHHhcCccccCCCC
Confidence 999999999999999999999999999999999999999 87765 4556669999999998 7
Q ss_pred CeEEEecCHHHHHH
Q psy3476 545 GVCYRLYSEEQYSL 558 (1417)
Q Consensus 545 G~cy~L~t~~~~~~ 558 (1417)
|.|+.++++.+...
T Consensus 374 g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 374 GLATSFFNERNINI 387 (417)
T ss_dssp EEEEEEECGGGGGG
T ss_pred ceEEEEEccccHHH
Confidence 99999999877543
No 21
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.98 E-value=1.4e-32 Score=337.46 Aligned_cols=321 Identities=18% Similarity=0.195 Sum_probs=123.1
Q ss_pred cCCCcHHHHHHHHHHHhcC--CeEEEEcCCCcchhHHHHHHHHHcCC-----CcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 36 NSLPVAQYKQEIIDTVLKE--RVVIIAGDTGCGKSTQIPQYLVQAGF-----QRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~--~~~iI~a~TGsGKTt~ipq~ile~~~-----~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
.--..+.+|.++++.+..+ ++++++||||||||.++..++++... .+++|+.|+|.+|.|+++++........
T Consensus 111 g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 111 GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 3344567899999999986 89999999999999998888876432 3799999999999999887765543333
Q ss_pred CCeEEEEEeeccc---ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhh
Q psy3476 109 SNLVGYQIRFEKH---RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRK 185 (1417)
Q Consensus 109 g~~vGy~ir~e~~---~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1417)
+..+++.+..... .....+|+++|+|.|++.+...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~------------------------------------------ 228 (479)
T 3fmp_B 191 ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL------------------------------------------ 228 (479)
T ss_dssp TCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTS------------------------------------------
T ss_pred CceEEEEeCCccccccccCCCCEEEECchHHHHHHHhc------------------------------------------
Confidence 4556665543322 2234679999999988766432
Q ss_pred hhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcC
Q psy3476 186 MLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHC 265 (1417)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~ 265 (1417)
T Consensus 229 -------------------------------------------------------------------------------- 228 (479)
T 3fmp_B 229 -------------------------------------------------------------------------------- 228 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHH
Q psy3476 266 GGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCL 345 (1417)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l 345 (1417)
....+.++++|||||+|.......+...+....
T Consensus 229 -----------------------------------------------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~ 261 (479)
T 3fmp_B 229 -----------------------------------------------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQ 261 (479)
T ss_dssp -----------------------------------------------CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHH
T ss_pred -----------------------------------------------CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHH
Confidence 002245789999999993332245666666666
Q ss_pred hccCCCCcEEEEccCCCHH--HHHHHhccCceEEEeCCccccee---EEeccccccccccccCCCCChHHHHHHHHHhhC
Q psy3476 346 LHSTAEVKIILMSATINIE--LFHTYFNRIAKIIKVPGRLYPIQ---LEYHPIVELDRTKSEKLDPGPYIRILSIIDKKY 420 (1417)
Q Consensus 346 ~~~r~~~qvIlmSATln~~--~~~~~f~~~~~vi~v~gr~~pv~---v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~ 420 (1417)
...+++.++|+||||++.+ .+...+..+...+.+........ ..+..... .......+...+
T Consensus 262 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~ 328 (479)
T 3fmp_B 262 RMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS-------------RDEKFQALCNLY 328 (479)
T ss_dssp TTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------------------------------------
T ss_pred hhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCC-------------HHHHHHHHHHHH
Confidence 6667889999999999754 44444434555555443211111 11110000 011122223333
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeE
Q psy3476 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~ 500 (1417)
.....+++||||++++.++.+++.|.. .++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 329 ~~~~~~~~lvF~~s~~~~~~l~~~L~~-----~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~ 403 (479)
T 3fmp_B 329 GAITIAQAMIFCHTRKTASWLAAELSK-----EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccCCceEEEeCcHHHHHHHHHHHHh-----CCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCC
Confidence 334467899999999999999999987 467899999999999999999999999999999999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
+||+ ||.|..... +.|..+|.||+|||||.| +|.|+.+++..+
T Consensus 404 ~VI~--------~d~p~~~~~----~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 404 VVIN--------FDLPVDKDG----NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp --------------------------------------------------------
T ss_pred EEEE--------ecCCCCCcc----CCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 9999 887754321 346667779999999998 799999998665
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.98 E-value=5.2e-31 Score=312.93 Aligned_cols=310 Identities=19% Similarity=0.229 Sum_probs=219.9
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----CCCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
..+.+|.++++.+.+++++++++|||||||.++..++++. +..++++..|+|.++.++++++.+-.....+..++
T Consensus 30 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 109 (391)
T 1xti_A 30 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 109 (391)
T ss_dssp SCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEE
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 3789999999999999999999999999999887777764 23489999999999999988776543222134444
Q ss_pred EEEeeccc-------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhh
Q psy3476 114 YQIRFEKH-------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKM 186 (1417)
Q Consensus 114 y~ir~e~~-------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (1417)
........ ......|+++|++.+++.+...
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~------------------------------------------- 146 (391)
T 1xti_A 110 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK------------------------------------------- 146 (391)
T ss_dssp EECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT-------------------------------------------
T ss_pred EEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC-------------------------------------------
Confidence 32221110 0122456666666655433211
Q ss_pred hccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCC
Q psy3476 187 LKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCG 266 (1417)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~ 266 (1417)
T Consensus 147 -------------------------------------------------------------------------------- 146 (391)
T 1xti_A 147 -------------------------------------------------------------------------------- 146 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHh
Q psy3476 267 GEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL 346 (1417)
Q Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~ 346 (1417)
...+.++++||+||||...-+.++...+...+.
T Consensus 147 -----------------------------------------------~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~ 179 (391)
T 1xti_A 147 -----------------------------------------------SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFR 179 (391)
T ss_dssp -----------------------------------------------SSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHH
T ss_pred -----------------------------------------------CccccccCEEEEeCHHHHhhccchHHHHHHHHh
Confidence 023667899999999943333466666666666
Q ss_pred ccCCCCcEEEEccCCC--HH-HHHHHhccCceEEEeCCcc----cceeEEeccccccccccccCCCCChHHHHHHHHHhh
Q psy3476 347 HSTAEVKIILMSATIN--IE-LFHTYFNRIAKIIKVPGRL----YPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKK 419 (1417)
Q Consensus 347 ~~r~~~qvIlmSATln--~~-~~~~~f~~~~~vi~v~gr~----~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 419 (1417)
..++..++++||||++ .. .+..++ .....+.+.... ..+...+..... ......+...+..
T Consensus 180 ~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~l~~- 247 (391)
T 1xti_A 180 MTPHEKQVMMFSATLSKEIRPVCRKFM-QDPMEIFVDDETKLTLHGLQQYYVKLKD----------NEKNRKLFDLLDV- 247 (391)
T ss_dssp TSCSSSEEEEEESSCCSTHHHHHHHHC-SSCEEEECCCCCCCCCTTCEEEEEECCG----------GGHHHHHHHHHHH-
T ss_pred hCCCCceEEEEEeeCCHHHHHHHHHHc-CCCeEEEecCccccCcccceEEEEEcCc----------hhHHHHHHHHHHh-
Confidence 6677899999999994 33 344555 344444433221 111111111110 0112233333332
Q ss_pred CCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCe
Q psy3476 420 YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGI 499 (1417)
Q Consensus 420 ~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V 499 (1417)
...+++||||+++++++.+++.|.+ .++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 248 ---~~~~~~lvf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~ 319 (391)
T 1xti_A 248 ---LEFNQVVIFVKSVQRCIALAQLLVE-----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV 319 (391)
T ss_dssp ---SCCSEEEEECSCHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTE
T ss_pred ---cCCCcEEEEeCcHHHHHHHHHHHHh-----CCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccC
Confidence 2468999999999999999999987 56789999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHH
Q psy3476 500 RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQY 556 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~ 556 (1417)
++||+ ||.+. |..++.||+|||||.| +|.|+.++++++.
T Consensus 320 ~~Vi~--------~~~p~----------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 320 NIAFN--------YDMPE----------DSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp EEEEE--------SSCCS----------SHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred CEEEE--------eCCCC----------CHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 99999 77765 5566669999999998 7999999986643
No 23
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.98 E-value=7.3e-31 Score=346.57 Aligned_cols=327 Identities=17% Similarity=0.195 Sum_probs=240.8
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEE
Q psy3476 37 SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGY 114 (1417)
Q Consensus 37 ~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy 114 (1417)
....+.+|.++++.+.++++++|+||||||||+++...++.. ...+++++.|+|.++.|.++++....+ .||.
T Consensus 84 ~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-----~vgl 158 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-----DVGL 158 (1010)
T ss_dssp SSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS-----CEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC-----CEEE
Confidence 345789999999999999999999999999999765555442 336899999999999999988877654 5665
Q ss_pred EEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccchh
Q psy3476 115 QIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYE 194 (1417)
Q Consensus 115 ~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 194 (1417)
. .++....+...|+++|+++|.+.+..+
T Consensus 159 l-tGd~~~~~~~~IvV~Tpe~L~~~L~~~--------------------------------------------------- 186 (1010)
T 2xgj_A 159 M-TGDITINPDAGCLVMTTEILRSMLYRG--------------------------------------------------- 186 (1010)
T ss_dssp E-CSSCEECTTCSEEEEEHHHHHHHHHHT---------------------------------------------------
T ss_pred E-eCCCccCCCCCEEEEcHHHHHHHHHcC---------------------------------------------------
Confidence 3 334445567899999999988755321
Q ss_pred hhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccccccc
Q psy3476 195 IEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADY 274 (1417)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~~ 274 (1417)
T Consensus 187 -------------------------------------------------------------------------------- 186 (1010)
T 2xgj_A 187 -------------------------------------------------------------------------------- 186 (1010)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcE
Q psy3476 275 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKI 354 (1417)
Q Consensus 275 ~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qv 354 (1417)
...+.++++|||||+| +..+.+....+...+...+++.++
T Consensus 187 ---------------------------------------~~~l~~l~lVViDEaH-~l~d~~rg~~~e~il~~l~~~~~i 226 (1010)
T 2xgj_A 187 ---------------------------------------SEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRY 226 (1010)
T ss_dssp ---------------------------------------CTTGGGEEEEEEETGG-GGGCTTTHHHHHHHHHHSCTTCEE
T ss_pred ---------------------------------------cchhhcCCEEEEechh-hhcccchhHHHHHHHHhcCCCCeE
Confidence 0235578899999999 555544444444555566788999
Q ss_pred EEEccCC-CHHHHHHHhc----cCceEEEeCCcccceeEEecccccccc----ccccC------------CC--------
Q psy3476 355 ILMSATI-NIELFHTYFN----RIAKIIKVPGRLYPIQLEYHPIVELDR----TKSEK------------LD-------- 405 (1417)
Q Consensus 355 IlmSATl-n~~~~~~~f~----~~~~vi~v~gr~~pv~v~~~~~~~~~~----~~~~~------------~~-------- 405 (1417)
|+||||+ |...+++|+. ..+.++..+.++.|+..++.+...... ..... +.
T Consensus 227 l~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 306 (1010)
T 2xgj_A 227 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPN 306 (1010)
T ss_dssp EEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--------
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccc
Confidence 9999999 7888889874 257778888898888776654220000 00000 00
Q ss_pred ---------------------CChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc-------------
Q psy3476 406 ---------------------PGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK------------- 451 (1417)
Q Consensus 406 ---------------------~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~------------- 451 (1417)
......++..+.. ...+++||||+++..++.+++.|....-.
T Consensus 307 ~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 307 STDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK----KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp ----------------------CHHHHHHHHHHH----HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccchHHHHHHHHHHHh----cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 1112223333322 23568999999999999999888641100
Q ss_pred ---------c------------CCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccc
Q psy3476 452 ---------S------------QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKE 510 (1417)
Q Consensus 452 ---------~------------~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~ 510 (1417)
. ....+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||++ .
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~ 458 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----V 458 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----S
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----C
Confidence 0 01238899999999999999999999999999999999999999999999983 2
Q ss_pred eecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHH
Q psy3476 511 MSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEE 554 (1417)
Q Consensus 511 ~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~ 554 (1417)
..||... ..|+|.++|.||+|||||.| .|.||.++++.
T Consensus 459 ~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 459 RKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred cccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 3466542 35889999999999999998 49999999753
No 24
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=1.7e-32 Score=334.71 Aligned_cols=199 Identities=21% Similarity=0.187 Sum_probs=145.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEecccc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV 394 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~ 394 (1417)
..+.++++|||||||.+....+....++... ...++.|+|+||||++.+....++ .+.+++.+. +..|..
T Consensus 106 ~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~-~~~~~~~~~-~~~p~~------- 175 (451)
T 2jlq_A 106 TRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPFPQ-SNSPIEDIE-REIPER------- 175 (451)
T ss_dssp SCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSCC-CSSCEEEEE-CCCCSS-------
T ss_pred ccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhhhc-CCCceEecC-ccCCch-------
Confidence 3467899999999995533333333333222 235689999999999653322222 344444332 222210
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
.+. .+...+.+ ..+++||||+++++++.+++.|.+ .++.+..+||.+ ++++++
T Consensus 176 --~~~-----------~~~~~l~~-----~~~~~lVF~~s~~~a~~l~~~L~~-----~g~~~~~lh~~~----~~~~~~ 228 (451)
T 2jlq_A 176 --SWN-----------TGFDWITD-----YQGKTVWFVPSIKAGNDIANCLRK-----SGKRVIQLSRKT----FDTEYP 228 (451)
T ss_dssp --CCS-----------SSCHHHHH-----CCSCEEEECSSHHHHHHHHHHHHT-----TTCCEEEECTTT----HHHHGG
T ss_pred --hhH-----------HHHHHHHh-----CCCCEEEEcCCHHHHHHHHHHHHH-----cCCeEEECCHHH----HHHHHH
Confidence 000 01122222 257899999999999999999987 467899999975 467999
Q ss_pred cCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccce---eecCHhhHHhhcCcCCCCC--CCeEEE
Q psy3476 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQE---FWISKASAEQRKGRAGRTG--PGVCYR 549 (1417)
Q Consensus 475 ~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~---~~ISkasa~QR~GRAGR~g--~G~cy~ 549 (1417)
.|++|+.+|||||+++|+|||||+ ++|||+|+.+...|| ..+...+.. .|.|.++|.||+|||||.| +|.||.
T Consensus 229 ~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~ 306 (451)
T 2jlq_A 229 KTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYV 306 (451)
T ss_dssp GGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred hhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCCccEEE
Confidence 999999999999999999999999 999999999999888 445566655 8999999999999999999 799998
Q ss_pred ecC
Q psy3476 550 LYS 552 (1417)
Q Consensus 550 L~t 552 (1417)
++.
T Consensus 307 ~~~ 309 (451)
T 2jlq_A 307 FSG 309 (451)
T ss_dssp ECS
T ss_pred EeC
Confidence 865
No 25
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=1.3e-30 Score=302.53 Aligned_cols=302 Identities=19% Similarity=0.240 Sum_probs=215.4
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEEe
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ir 117 (1417)
-..+.+|.++++.+.+++++++++|||||||.++..++++.+ .+++++.|++.++.++++++.+. +...+..++....
T Consensus 15 ~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~-~~~liv~P~~~L~~q~~~~~~~~-~~~~~~~~~~~~~ 92 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELG-MKSLVVTPTRELTRQVASHIRDI-GRYMDTKVAEVYG 92 (337)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHT-CCEEEECSSHHHHHHHHHHHHHH-TTTSCCCEEEECT
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhc-CCEEEEeCCHHHHHHHHHHHHHH-hhhcCCcEEEEEC
Confidence 346789999999999999999999999999999888888764 57888889999999998877643 3333444443322
Q ss_pred eccc-----ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccc
Q psy3476 118 FEKH-----RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNA 192 (1417)
Q Consensus 118 ~e~~-----~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 192 (1417)
.... ......|+++|++.|++.+...
T Consensus 93 ~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~------------------------------------------------- 123 (337)
T 2z0m_A 93 GMPYKAQINRVRNADIVVATPGRLLDLWSKG------------------------------------------------- 123 (337)
T ss_dssp TSCHHHHHHHHTTCSEEEECHHHHHHHHHTT-------------------------------------------------
T ss_pred CcchHHHHhhcCCCCEEEECHHHHHHHHHcC-------------------------------------------------
Confidence 1111 0123567777777766543221
Q ss_pred hhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccccc
Q psy3476 193 YEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAA 272 (1417)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~ 272 (1417)
T Consensus 124 -------------------------------------------------------------------------------- 123 (337)
T 2z0m_A 124 -------------------------------------------------------------------------------- 123 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCC
Q psy3476 273 DYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV 352 (1417)
Q Consensus 273 ~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~ 352 (1417)
...+.++++||+||+| +..+.++...+...+...+...
T Consensus 124 -----------------------------------------~~~~~~~~~iViDEah-~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T 2z0m_A 124 -----------------------------------------VIDLSSFEIVIIDEAD-LMFEMGFIDDIKIILAQTSNRK 161 (337)
T ss_dssp -----------------------------------------SCCGGGCSEEEEESHH-HHHHTTCHHHHHHHHHHCTTCS
T ss_pred -----------------------------------------CcchhhCcEEEEEChH-HhhccccHHHHHHHHhhCCccc
Confidence 0124567899999999 4444455555555555666788
Q ss_pred cEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 353 KIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 353 qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
++++||||++.. .+..++ .+...+........+...+..... .....+..+. ...++++|
T Consensus 162 ~~~~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~----~~~~~~~l 224 (337)
T 2z0m_A 162 ITGLFSATIPEEIRKVVKDFI-TNYEEIEACIGLANVEHKFVHVKD------------DWRSKVQALR----ENKDKGVI 224 (337)
T ss_dssp EEEEEESCCCHHHHHHHHHHS-CSCEEEECSGGGGGEEEEEEECSS------------SSHHHHHHHH----TCCCSSEE
T ss_pred EEEEEeCcCCHHHHHHHHHhc-CCceeeecccccCCceEEEEEeCh------------HHHHHHHHHH----hCCCCcEE
Confidence 899999999744 455666 344444333222223222221110 1112233332 24578899
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCccc
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVK 509 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k 509 (1417)
|||+++++++.+++.|. .+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 225 vf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----- 290 (337)
T 2z0m_A 225 VFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN----- 290 (337)
T ss_dssp EECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE-----
T ss_pred EEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE-----
Confidence 99999999999887764 3788999999999999999999999999999999999999999999999
Q ss_pred ceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 510 EMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 510 ~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
|+++. |..++.||+|||||.| +|.|+.++. .+..
T Consensus 291 ---~~~~~----------s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~ 325 (337)
T 2z0m_A 291 ---FDAPQ----------DLRTYIHRIGRTGRMGRKGEAITFIL-NEYW 325 (337)
T ss_dssp ---SSCCS----------SHHHHHHHHTTBCGGGCCEEEEEEES-SCHH
T ss_pred ---ecCCC----------CHHHhhHhcCccccCCCCceEEEEEe-CcHH
Confidence 77765 4556669999999998 799999988 4433
No 26
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=7.8e-31 Score=332.12 Aligned_cols=280 Identities=17% Similarity=0.175 Sum_probs=195.9
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccCCC-HHHHHHHhccCceEEEeCCcccceeEEeccc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSATIN-IELFHTYFNRIAKIIKVPGRLYPIQLEYHPI 393 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSATln-~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~ 393 (1417)
....+++|||||+| +..+.++...+...+...+ .+.+++++|||.+ .+.+....+.... +....+..|.....
T Consensus 236 l~~~v~lvVIDEaH-~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~-v~~~~r~~~l~~~~--- 310 (677)
T 3rc3_A 236 VTTPYEVAVIDEIQ-MIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVE-VRDYKRLTPISVLD--- 310 (677)
T ss_dssp SSSCEEEEEECSGG-GGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEE-EEECCCSSCEEECS---
T ss_pred hcccCCEEEEecce-ecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceE-EEEeeecchHHHHH---
Confidence 35678999999999 4577778888777777776 7889999999963 3344444422222 22222222222110
Q ss_pred cccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHh
Q psy3476 394 VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF 473 (1417)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~ 473 (1417)
..+ ..+.+ ...| .+|||+++++++.+++.|.+ .++.+.++||+|++++|..++
T Consensus 311 --------~~l---------~~l~~----~~~g-~iIf~~s~~~ie~la~~L~~-----~g~~v~~lHG~L~~~~R~~~~ 363 (677)
T 3rc3_A 311 --------HAL---------ESLDN----LRPG-DCIVCFSKNDIYSVSRQIEI-----RGLESAVIYGSLPPGTKLAQA 363 (677)
T ss_dssp --------SCC---------CSGGG----CCTT-EEEECSSHHHHHHHHHHHHH-----TTCCCEEECTTSCHHHHHHHH
T ss_pred --------HHH---------HHHHh----cCCC-CEEEEcCHHHHHHHHHHHHh-----cCCCeeeeeccCCHHHHHHHH
Confidence 000 00011 1233 47889999999999999987 468899999999999999999
Q ss_pred ccCCC--CCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC----CCeE
Q psy3476 474 HYAPE--GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG----PGVC 547 (1417)
Q Consensus 474 ~~f~~--G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g----~G~c 547 (1417)
+.|++ |.++|||||+++++|||| +|++||++|..|. .||+..+. . ..|+|.++|.||+|||||.| +|.|
T Consensus 364 ~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~-~--~~p~s~~~~~QR~GRAGR~g~~g~~G~v 438 (677)
T 3rc3_A 364 KKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER-E--LEPITTSQALQIAGRAGRFSSRFKEGEV 438 (677)
T ss_dssp HHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEE
T ss_pred HHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc-c--cccCCHHHHHHHhcCCCCCCCCCCCEEE
Confidence 99998 999999999999999999 8999999998877 67665322 2 45999999999999999998 4899
Q ss_pred EEecCHH--HHHHhhccCCCcccccChHHHHHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCC------
Q psy3476 548 YRLYSEE--QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKER------ 619 (1417)
Q Consensus 548 y~L~t~~--~~~~l~~~~~pEI~r~~L~~~lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~------ 619 (1417)
|.+++++ .+..+.....++|.+.++....++++.++.. ++...+...++.+...+.++....
T Consensus 439 ~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l~~~~~~----------l~~~~l~ell~~l~~~~~vd~~f~~~~l~~ 508 (677)
T 3rc3_A 439 TTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYH----------LPDATLSNLIDIFVDFSQVDGQYFVCNMDD 508 (677)
T ss_dssp EESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHHHHHHHH----------STTSCHHHHHHHHHHHCBCCTTEEECCCHH
T ss_pred EEEecchHHHHHHHHhcCcchhhhccCCChHHHHHHHhcc----------CCcchHHHHHHHHHHhhcccchhhccchHH
Confidence 9999877 5667888899999998888888888877621 123346777777888877774321
Q ss_pred cChhhhhccCCCCChhhHHHHHh
Q psy3476 620 VTSLGRFLSDLPVDIPLGKMLVF 642 (1417)
Q Consensus 620 lT~LG~~ls~lpldp~lak~Ll~ 642 (1417)
...++..+..+|++...--.++.
T Consensus 509 ~~~la~~l~~~~L~~~~~~~f~~ 531 (677)
T 3rc3_A 509 FKFSAELIQHIPLSLRVRYVFCT 531 (677)
T ss_dssp HHHHHHHTTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCHHHHhheEe
Confidence 23455556666665555444433
No 27
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=6.4e-32 Score=340.57 Aligned_cols=299 Identities=18% Similarity=0.186 Sum_probs=215.2
Q ss_pred HhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---CCCcEEEecchHHHHHHHHHHHHHHHccccCC
Q psy3476 34 TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---GFQRIACTQPRRIACISLSKRVAYETLSQYSN 110 (1417)
Q Consensus 34 ~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~ 110 (1417)
.+..+|++.+ .++.+.++++++++||||||||+++...+++. ...+++|+.|+|.+|.|+++.+. |.
T Consensus 169 ~~~~lpiq~~---~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~-------~~ 238 (618)
T 2whx_A 169 ERIGEPDYEV---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR-------GL 238 (618)
T ss_dssp CCCCCCCCCC---CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TS
T ss_pred cccCCCcccc---CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc-------CC
Confidence 3788999765 38899999999999999999999865544432 33589999999998888876553 45
Q ss_pred eEEEEEee-cccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhcc
Q psy3476 111 LVGYQIRF-EKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKA 189 (1417)
Q Consensus 111 ~vGy~ir~-e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 189 (1417)
.++|+++. +...++.+.+.++|.|.+.+.+..+
T Consensus 239 ~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~---------------------------------------------- 272 (618)
T 2whx_A 239 PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSS---------------------------------------------- 272 (618)
T ss_dssp CEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHC----------------------------------------------
T ss_pred ceeEecccceeccCCCceEEEEChHHHHHHHhcc----------------------------------------------
Confidence 67776653 3334556667777777666544321
Q ss_pred ccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcc
Q psy3476 190 DNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEI 269 (1417)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~ 269 (1417)
T Consensus 273 -------------------------------------------------------------------------------- 272 (618)
T 2whx_A 273 -------------------------------------------------------------------------------- 272 (618)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhcc-
Q psy3476 270 VAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHS- 348 (1417)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~- 348 (1417)
..+.++++|||||||++ +.++...+.......
T Consensus 273 ---------------------------------------------~~l~~~~~iViDEah~~--~~~~~~~~~~i~~~l~ 305 (618)
T 2whx_A 273 ---------------------------------------------TRVPNYNLIVMDEAHFT--DPCSVAARGYISTRVE 305 (618)
T ss_dssp ---------------------------------------------SSCCCCSEEEEESTTCC--SHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------ccccCCeEEEEECCCCC--CccHHHHHHHHHHHhc
Confidence 34778999999999965 433333222222222
Q ss_pred CCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcE
Q psy3476 349 TAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428 (1417)
Q Consensus 349 r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~i 428 (1417)
+++.|+|+||||++.. ...+...+.+.+.+..+ + +. .. . ..++..+.+ ..+++
T Consensus 306 ~~~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~~-------~-~~--~~------~-----~~ll~~l~~-----~~~~~ 358 (618)
T 2whx_A 306 MGEAAAIFMTATPPGS-TDPFPQSNSPIEDIERE-------I-PE--RS------W-----NTGFDWITD-----YQGKT 358 (618)
T ss_dssp HTSCEEEEECSSCTTC-CCSSCCCSSCEEEEECC-------C-CS--SC------C-----SSSCHHHHH-----CCSCE
T ss_pred ccCccEEEEECCCchh-hhhhhccCCceeeeccc-------C-CH--HH------H-----HHHHHHHHh-----CCCCE
Confidence 3688999999999533 12233223333332221 1 10 00 0 011222322 26789
Q ss_pred EEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcc
Q psy3476 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKV 508 (1417)
Q Consensus 429 LVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~ 508 (1417)
||||+++++++.+++.|.+ .++.+..+||. +|.++++.|++|+.+||||||++++||||| +++|||+|..
T Consensus 359 LVF~~s~~~a~~l~~~L~~-----~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 359 VWFVPSIKAGNDIANCLRK-----SGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp EEECSSHHHHHHHHHHHHH-----TTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred EEEECChhHHHHHHHHHHH-----cCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 9999999999999999987 46789999984 788899999999999999999999999998 9999999998
Q ss_pred cceec--ccCCCccccceeecCHhhHHhhcCcCCCCC--CCeEEEecC
Q psy3476 509 KEMSY--DVTAKMSTLQEFWISKASAEQRKGRAGRTG--PGVCYRLYS 552 (1417)
Q Consensus 509 k~~~y--D~~~~~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy~L~t 552 (1417)
+...+ +...++......|+|.++|.||+|||||.| +|.||.+++
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 77665 333345556677999999999999999996 899999997
No 28
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=1.6e-31 Score=317.36 Aligned_cols=314 Identities=18% Similarity=0.233 Sum_probs=116.1
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----CCCcEEEecchHHHHHHHHHHHHHHHccccCCeE
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLSKRVAYETLSQYSNLV 112 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~v 112 (1417)
-..+.+|.++++.+.+++.+++++|||||||.++..++++. ...++++..|+|..+.++++++.+.. ...+..+
T Consensus 42 ~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~~~~~ 120 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA-FHMDIKV 120 (394)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT-TTSCCCE
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHh-ccCCeeE
Confidence 35678999999999999999999999999999877777654 23589999999999999888765543 3334444
Q ss_pred EEEEeecccc-----cCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhh
Q psy3476 113 GYQIRFEKHR-----REKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKML 187 (1417)
Q Consensus 113 Gy~ir~e~~~-----~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (1417)
+......... .....|+++|++.+++.+...
T Consensus 121 ~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-------------------------------------------- 156 (394)
T 1fuu_A 121 HACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR-------------------------------------------- 156 (394)
T ss_dssp EEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTT--------------------------------------------
T ss_pred EEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhC--------------------------------------------
Confidence 4332211110 013567777777766544321
Q ss_pred ccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCC
Q psy3476 188 KADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGG 267 (1417)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~ 267 (1417)
T Consensus 157 -------------------------------------------------------------------------------- 156 (394)
T 1fuu_A 157 -------------------------------------------------------------------------------- 156 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhc
Q psy3476 268 EIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 347 (1417)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~ 347 (1417)
...+.++++||+||+| +..+.++...+...+..
T Consensus 157 ----------------------------------------------~~~~~~~~~vIiDEah-~~~~~~~~~~~~~~~~~ 189 (394)
T 1fuu_A 157 ----------------------------------------------RFRTDKIKMFILDEAD-EMLSSGFKEQIYQIFTL 189 (394)
T ss_dssp ----------------------------------------------SSCCTTCCEEEEETHH-HHHHTTCHHHHHHHHHH
T ss_pred ----------------------------------------------CcchhhCcEEEEEChH-HhhCCCcHHHHHHHHHh
Confidence 0235678999999999 44455566666666666
Q ss_pred cCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccce---eEEeccccccccccccCCCCChHHHHHHHHHhhCC
Q psy3476 348 STAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPI---QLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP 421 (1417)
Q Consensus 348 ~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv---~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 421 (1417)
.++..++++||||++.. .+..++ .+...+.+....... ...+...... ......+.+.+.
T Consensus 190 ~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~ 255 (394)
T 1fuu_A 190 LPPTTQVVLLSATMPNDVLEVTTKFM-RNPVRILVKKDELTLEGIKQFYVNVEEE-------------EYKYECLTDLYD 255 (394)
T ss_dssp SCTTCEEEEECSSCCHHHHHHHHHHC-CSCEEEEECC-------------------------------------------
T ss_pred CCCCceEEEEEEecCHHHHHHHHHhc-CCCeEEEecCccccCCCceEEEEEcCch-------------hhHHHHHHHHHh
Confidence 77889999999999743 344555 333333333221111 1111100000 001122222333
Q ss_pred CCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEE
Q psy3476 422 RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 422 ~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~ 501 (1417)
....+++||||+++++++.+++.|.+ .++.+..+||+++.++|..+++.|++|..+|||||+++++|+|+|++++
T Consensus 256 ~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~ 330 (394)
T 1fuu_A 256 SISVTQAVIFCNTRRKVEELTTKLRN-----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL 330 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCcEEEEECCHHHHHHHHHHHHH-----cCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCE
Confidence 33467899999999999999999976 5678999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHhh
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLLA 560 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l~ 560 (1417)
||+ ||++.+.. ++.||+||+||.| +|.|+.++++++...+.
T Consensus 331 Vi~--------~~~p~s~~----------~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~ 372 (394)
T 1fuu_A 331 VIN--------YDLPANKE----------NYIHRIGRGGRFGRKGVAINFVTNEDVGAMR 372 (394)
T ss_dssp ------------------------------------------------------------
T ss_pred EEE--------eCCCCCHH----------HHHHHcCcccCCCCCceEEEEEchhHHHHHH
Confidence 999 77765444 4559999999998 89999999988766543
No 29
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=5.3e-31 Score=329.60 Aligned_cols=213 Identities=17% Similarity=0.234 Sum_probs=147.3
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHH---hc----cCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCc--cc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCL---LH----STAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGR--LY 384 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l---~~----~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr--~~ 384 (1417)
.++++++||||||| +..+.+|...+...+ .. ..++.|+++||||++ ...+..++......+.+... ..
T Consensus 223 ~~~~~~~lViDEah-~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 301 (563)
T 3i5x_A 223 FFRFVDYKVLDEAD-RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNE 301 (563)
T ss_dssp HCTTCCEEEEETHH-HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSS
T ss_pred ccccceEEEEeCHH-HHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCC
Confidence 46678999999999 555555554443332 22 234789999999996 34555555343333332111 00
Q ss_pred c-----eeEEeccccccccccccCCCCChHHHHHHHHHhhCC-CCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEE
Q psy3476 385 P-----IQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP-RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVL 458 (1417)
Q Consensus 385 p-----v~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~ 458 (1417)
+ +...+... .. ........+..+.+.+. ...++++||||++++.++.+++.|.+... .++.+.
T Consensus 302 ~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~v~ 370 (563)
T 3i5x_A 302 PEAHERIDQSVVIS--------EK-FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPIL 370 (563)
T ss_dssp CSSCTTEEEEEEEE--------SS-TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT--TTSCEE
T ss_pred ccccccCceEEEEC--------ch-hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc--CCceEE
Confidence 0 00000000 00 00111222222222211 14467999999999999999999987432 367899
Q ss_pred EecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCc
Q psy3476 459 PLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538 (1417)
Q Consensus 459 ~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GR 538 (1417)
.+||+|++++|..+++.|++|+.+|||||+++++|||+|+|++||+ ||.|.+...| .||+||
T Consensus 371 ~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~~~p~s~~~y----------~Qr~GR 432 (563)
T 3i5x_A 371 EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGVPSELANY----------IHRIGR 432 (563)
T ss_dssp EESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESCCSSTTHH----------HHHHTT
T ss_pred EecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE--------ECCCCchhhh----------hhhcCc
Confidence 9999999999999999999999999999999999999999999999 8887755555 499999
Q ss_pred CCCCC-CCeEEEecCHHHHHH
Q psy3476 539 AGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 539 AGR~g-~G~cy~L~t~~~~~~ 558 (1417)
|||.| +|.|+.++++.+...
T Consensus 433 agR~g~~g~~i~~~~~~e~~~ 453 (563)
T 3i5x_A 433 TARSGKEGSSVLFICKDELPF 453 (563)
T ss_dssp SSCTTCCEEEEEEEEGGGHHH
T ss_pred cccCCCCceEEEEEchhHHHH
Confidence 99999 899999998876543
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.1e-31 Score=332.45 Aligned_cols=336 Identities=19% Similarity=0.232 Sum_probs=211.1
Q ss_pred cHHHHHHHHHHHhcC--CeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHcc-ccCCe
Q psy3476 40 VAQYKQEIIDTVLKE--RVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLS-QYSNL 111 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~--~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~-~~g~~ 111 (1417)
.+.+|.++++.+.++ ++++|+||||||||.++..++++.. ..+++++.|++.++.|+++++...... .+...
T Consensus 142 p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~ 221 (508)
T 3fho_A 142 XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA 221 (508)
T ss_dssp CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEE
T ss_pred cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEE
Confidence 456799999999887 8999999999999998887777642 247999999999999998887665422 12222
Q ss_pred EEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhcccc
Q psy3476 112 VGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 191 (1417)
Q Consensus 112 vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 191 (1417)
+++.............|+++|++.+++.+...
T Consensus 222 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~------------------------------------------------ 253 (508)
T 3fho_A 222 FGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRR------------------------------------------------ 253 (508)
T ss_dssp C----------CCCCSEEEECHHHHHHHHHTT------------------------------------------------
T ss_pred EEeCCcccccccCCCCEEEECHHHHHHHHHcC------------------------------------------------
Confidence 23322222223346789999998887754322
Q ss_pred chhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccc
Q psy3476 192 AYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVA 271 (1417)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~ 271 (1417)
T Consensus 254 -------------------------------------------------------------------------------- 253 (508)
T 3fho_A 254 -------------------------------------------------------------------------------- 253 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCC
Q psy3476 272 ADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE 351 (1417)
Q Consensus 272 ~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~ 351 (1417)
...+.++++||+||+|....+.++...+.......+++
T Consensus 254 ------------------------------------------~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~ 291 (508)
T 3fho_A 254 ------------------------------------------QLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRN 291 (508)
T ss_dssp ------------------------------------------CSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTT
T ss_pred ------------------------------------------CccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcC
Confidence 02356789999999994443345666666666667778
Q ss_pred CcEEEEccCCC--HHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATIN--IELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++|+||||++ .+.+...+..+...+.+..+..+......... ...........+...+.....+++|
T Consensus 292 ~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~~~~~k~~~l~~ll~~~~~~~~L 361 (508)
T 3fho_A 292 TQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYM----------DCQSEEHKYNVLVELYGLLTIGQSI 361 (508)
T ss_dssp CEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEE----------EC--CHHHHHHHHHHHC---CCCEE
T ss_pred CeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEE----------ECCchHHHHHHHHHHHHhcCCCcEE
Confidence 99999999996 56666666555555555443322211000000 0000112233333444444578999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCccc
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVK 509 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k 509 (1417)
|||+++++++.+++.|.+ .+..+..+||+++.++|..+++.|++|+.+|||||+++++|||+|++++||+
T Consensus 362 VF~~s~~~a~~l~~~L~~-----~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~----- 431 (508)
T 3fho_A 362 IFCKKKDTAEEIARRMTA-----DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN----- 431 (508)
T ss_dssp EBCSSTTTTTHHHHHHTT-----TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC-----
T ss_pred EEECCHHHHHHHHHHHHh-----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE-----
Confidence 999999999999999976 5678999999999999999999999999999999999999999999999998
Q ss_pred ceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH----HHHhhccCCCcccccCh
Q psy3476 510 EMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ----YSLLAEYSTPEIRRVSI 572 (1417)
Q Consensus 510 ~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~----~~~l~~~~~pEI~r~~L 572 (1417)
||.+... ..+.|..++.||+|||||.| +|.|+.+++..+ ...+.++...++.+.+.
T Consensus 432 ---~~~p~~~----~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 432 ---YDMPLDQ----AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp -------CC---------CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred ---ECCCCcc----cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 7766321 11246677889999999999 799999997432 23445555555555443
No 31
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.97 E-value=2.1e-30 Score=325.54 Aligned_cols=212 Identities=18% Similarity=0.164 Sum_probs=151.1
Q ss_pred CCCccEEEEecCcccccCc-chHHHHH--HHHhccCCCCcEEEEccCCCH---HHHHHHhccCceEEEeCCcccceeEEe
Q psy3476 317 LSSYDVLVLDEIHERHLHG-DFLLGVI--KCLLHSTAEVKIILMSATINI---ELFHTYFNRIAKIIKVPGRLYPIQLEY 390 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~-d~ll~ll--k~l~~~r~~~qvIlmSATln~---~~~~~~f~~~~~vi~v~gr~~pv~v~~ 390 (1417)
+.++++|||||||..+-++ ||...+. ..+....++.++|+||||++. +.+.+++....+.+...+...| .+.|
T Consensus 163 ~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~-nl~~ 241 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRP-NLYY 241 (591)
T ss_dssp TTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCT-TEEE
T ss_pred ccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCc-ccEE
Confidence 5578899999999543322 2333222 234445678999999999975 3556677433333322221111 1222
Q ss_pred ccccccccccccCCCCChHHHHHHHHHhhCC-CCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHH
Q psy3476 391 HPIVELDRTKSEKLDPGPYIRILSIIDKKYP-RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQ 469 (1417)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR 469 (1417)
...... ......+..+.+.+. ...++++||||+++++++.+++.|.. .++.+..+||+|++++|
T Consensus 242 ~v~~~~----------~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~-----~g~~~~~~h~~l~~~~R 306 (591)
T 2v1x_A 242 EVRQKP----------SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQN-----LGIHAGAYHANLEPEDK 306 (591)
T ss_dssp EEEECC----------SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHH
T ss_pred EEEeCC----------CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHH-----CCCCEEEecCCCCHHHH
Confidence 111100 011122333333332 12467999999999999999999987 57889999999999999
Q ss_pred HHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEE
Q psy3476 470 DRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCY 548 (1417)
Q Consensus 470 ~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy 548 (1417)
..+++.|++|+.+|||||+++++|||+|+|++||+ ||.|.++ .+|.||+|||||.| +|.|+
T Consensus 307 ~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~--------~~~p~s~----------~~y~Qr~GRaGR~G~~g~~i 368 (591)
T 2v1x_A 307 TTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH--------HSMSKSM----------ENYYQESGRAGRDDMKADCI 368 (591)
T ss_dssp HHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE--------SSCCSSH----------HHHHHHHTTSCTTSSCEEEE
T ss_pred HHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE--------eCCCCCH----------HHHHHHhccCCcCCCCceEE
Confidence 99999999999999999999999999999999999 8887754 45559999999999 89999
Q ss_pred EecCHHHHHHhhcc
Q psy3476 549 RLYSEEQYSLLAEY 562 (1417)
Q Consensus 549 ~L~t~~~~~~l~~~ 562 (1417)
.+|+..+...+..+
T Consensus 369 ~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 369 LYYGFGDIFRISSM 382 (591)
T ss_dssp EEECHHHHHHHHHH
T ss_pred EEEChHHHHHHHHH
Confidence 99999988765543
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=1.7e-30 Score=332.94 Aligned_cols=151 Identities=15% Similarity=0.222 Sum_probs=89.9
Q ss_pred HHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEe--------cCCCCHHHHHHHhccCCC-CCce
Q psy3476 412 ILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPL--------HSTLSLEEQDRVFHYAPE-GLRK 482 (1417)
Q Consensus 412 il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~L--------Hs~Ls~~eR~~v~~~f~~-G~rk 482 (1417)
+...+.+.+....++++||||+++++++.+++.|..... ...+.+..+ ||+|++++|.++++.|++ |.++
T Consensus 385 L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~-~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~ 463 (696)
T 2ykg_A 385 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK-LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 463 (696)
T ss_dssp HHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTT-CCSCCEEC-----------------------------CCS
T ss_pred HHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCC-ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc
Confidence 334444443334568999999999999999999987321 112667777 669999999999999998 9999
Q ss_pred EEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHH------
Q psy3476 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQY------ 556 (1417)
Q Consensus 483 VLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~------ 556 (1417)
|||||+++++|||+|++++||+ ||+|.+...|. ||+|| ||..+|.||.++++.+.
T Consensus 464 vLVaT~v~~~GiDip~v~~VI~--------~d~p~s~~~~~----------Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 464 ILIATSVADEGIDIAQCNLVIL--------YEYVGNVIKMI----------QTRGR-GRARGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp CSEEEESSCCC---CCCSEEEE--------ESCC--CCCC--------------------CCCEEEEEESCHHHHHHHHH
T ss_pred EEEEechhhcCCcCccCCEEEE--------eCCCCCHHHHH----------Hhhcc-CcCCCceEEEEecCCCHHHHHHH
Confidence 9999999999999999999999 99998877777 99999 99999999999998776
Q ss_pred ----HHhhccCCCcccccChHHHHHHHHhh
Q psy3476 557 ----SLLAEYSTPEIRRVSIDSLLLSLVCM 582 (1417)
Q Consensus 557 ----~~l~~~~~pEI~r~~L~~~lL~lk~l 582 (1417)
+.+.....+++.+.+.+.+..+++.+
T Consensus 525 ~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~ 554 (696)
T 2ykg_A 525 NMYKEKMMNDSILRLQTWDEAVFREKILHI 554 (696)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 34455666777777777776666543
No 33
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=1.6e-30 Score=326.90 Aligned_cols=213 Identities=17% Similarity=0.219 Sum_probs=146.8
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHh---cc----CCCCcEEEEccCCCH--HHHHHHhccCceEEEeCCc--cc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLL---HS----TAEVKIILMSATINI--ELFHTYFNRIAKIIKVPGR--LY 384 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~---~~----r~~~qvIlmSATln~--~~~~~~f~~~~~vi~v~gr--~~ 384 (1417)
.+.++++||||||| +..+.+|...+...+. .. .++.++++||||++. ..+..++......+.+... ..
T Consensus 172 ~~~~~~~lViDEah-~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~ 250 (579)
T 3sqw_A 172 FFRFVDYKVLDEAD-RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNE 250 (579)
T ss_dssp HCTTCCEEEEETHH-HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSS
T ss_pred ccccCCEEEEEChH-HhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccc
Confidence 45678999999999 5555555554433322 22 247899999999963 4444444333333332211 00
Q ss_pred c-----eeEEeccccccccccccCCCCChHHHHHHHHHhhCC-CCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEE
Q psy3476 385 P-----IQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP-RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVL 458 (1417)
Q Consensus 385 p-----v~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~ 458 (1417)
+ +...+... .. ........+..+.+.+. ...++++||||++++.++.+++.|.+... .++.+.
T Consensus 251 ~~~~~~i~~~~~~~--------~~-~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~ 319 (579)
T 3sqw_A 251 PEAHERIDQSVVIS--------EK-FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPIL 319 (579)
T ss_dssp CSSCTTEEEEEEEE--------SS-TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT--TTSCEE
T ss_pred cccccccceEEEEe--------cc-hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc--CCCcEE
Confidence 0 11000000 00 00111222222222221 13467999999999999999999987432 367899
Q ss_pred EecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCc
Q psy3476 459 PLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538 (1417)
Q Consensus 459 ~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GR 538 (1417)
.+||+|++++|..+++.|++|+.+|||||+++++|||+|+|++||+ ||.|.....|+ ||+||
T Consensus 320 ~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~--------~~~p~s~~~y~----------Qr~GR 381 (579)
T 3sqw_A 320 EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGVPSELANYI----------HRIGR 381 (579)
T ss_dssp EESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESCCSSTTHHH----------HHHTT
T ss_pred EecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE--------cCCCCCHHHhh----------hhccc
Confidence 9999999999999999999999999999999999999999999999 88877555554 99999
Q ss_pred CCCCC-CCeEEEecCHHHHHH
Q psy3476 539 AGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 539 AGR~g-~G~cy~L~t~~~~~~ 558 (1417)
|||.| +|.|+.++++.+...
T Consensus 382 agR~g~~g~~i~~~~~~e~~~ 402 (579)
T 3sqw_A 382 TARSGKEGSSVLFICKDELPF 402 (579)
T ss_dssp SSCTTCCEEEEEEEEGGGHHH
T ss_pred cccCCCCceEEEEEcccHHHH
Confidence 99999 799999998876553
No 34
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.96 E-value=2.9e-29 Score=311.64 Aligned_cols=204 Identities=19% Similarity=0.252 Sum_probs=151.0
Q ss_pred CCccEEEEecCcccccCc-chHHHH--HHHHhccCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEEec
Q psy3476 318 SSYDVLVLDEIHERHLHG-DFLLGV--IKCLLHSTAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLEYH 391 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~-d~ll~l--lk~l~~~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~~~ 391 (1417)
.++++|||||||..+-++ +|...+ +..+....++.++++||||++.. .+.++++-..+.+.+.+...| .+.|.
T Consensus 138 ~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~ 216 (523)
T 1oyw_A 138 WNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYM 216 (523)
T ss_dssp SCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCT-TEEEE
T ss_pred CCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC-ceEEE
Confidence 578899999999554332 343333 22334445789999999999754 556666434444444332222 12221
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
.... ......++..+.+ ..++++||||+++++++.+++.|.. .++.+..+||+|++++|..
T Consensus 217 v~~~----------~~~~~~l~~~l~~----~~~~~~IVf~~sr~~~e~l~~~L~~-----~g~~~~~~h~~l~~~~R~~ 277 (523)
T 1oyw_A 217 LMEK----------FKPLDQLMRYVQE----QRGKSGIIYCNSRAKVEDTAARLQS-----KGISAAAYHAGLENNVRAD 277 (523)
T ss_dssp EEEC----------SSHHHHHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHH
T ss_pred EEeC----------CCHHHHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHH-----CCCCEEEecCCCCHHHHHH
Confidence 1110 1223444555543 2467899999999999999999987 5788999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEe
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRL 550 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L 550 (1417)
+++.|++|+.+|||||+++++|||+|+|++||+ ||.|.+ .++|.||+|||||.| +|.|+.+
T Consensus 278 ~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~--------~~~p~s----------~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 278 VQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FDIPRN----------IESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp HHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE--------SSCCSS----------HHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHHHHHcCCCeEEEEechhhCCCCccCccEEEE--------ECCCCC----------HHHHHHHhccccCCCCCceEEEE
Confidence 999999999999999999999999999999999 887764 455669999999999 8999999
Q ss_pred cCHHHHHHh
Q psy3476 551 YSEEQYSLL 559 (1417)
Q Consensus 551 ~t~~~~~~l 559 (1417)
|+.++...+
T Consensus 340 ~~~~d~~~~ 348 (523)
T 1oyw_A 340 YDPADMAWL 348 (523)
T ss_dssp ECHHHHHHH
T ss_pred eCHHHHHHH
Confidence 999887643
No 35
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.96 E-value=2.2e-29 Score=306.30 Aligned_cols=200 Identities=20% Similarity=0.182 Sum_probs=134.1
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEecccc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV 394 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~ 394 (1417)
..+.++++||+||+|......++..+++..+.. +++.++++||||++.. ...+..... |+........
T Consensus 95 ~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~-~~~~~~~~~----------~~~~~~~~~~ 162 (440)
T 1yks_A 95 TRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGT-SDEFPHSNG----------EIEDVQTDIP 162 (440)
T ss_dssp SCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCCCSS----------CEEEEECCCC
T ss_pred ccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCch-hhhhhhcCC----------CeeEeeeccC
Confidence 457889999999999542222233444444432 4679999999999532 111111111 1111111000
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
... . ...+..+.+ .++++||||+++++++.+++.|++ .++.+..+|| ++|.++++
T Consensus 163 ~~~------~-----~~~~~~l~~-----~~~~~lVF~~s~~~a~~l~~~L~~-----~~~~v~~lhg----~~R~~~~~ 217 (440)
T 1yks_A 163 SEP------W-----NTGHDWILA-----DKRPTAWFLPSIRAANVMAASLRK-----AGKSVVVLNR----KTFEREYP 217 (440)
T ss_dssp SSC------C-----SSSCHHHHH-----CCSCEEEECSCHHHHHHHHHHHHH-----TTCCEEECCS----SSCC----
T ss_pred hHH------H-----HHHHHHHHh-----cCCCEEEEeCCHHHHHHHHHHHHH-----cCCCEEEecc----hhHHHHHh
Confidence 000 0 001222222 257999999999999999999987 4678999999 46899999
Q ss_pred cCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecc-cCCCccccceeecCHhhHHhhcCcCCCC-C-CCeEEEec
Q psy3476 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYD-VTAKMSTLQEFWISKASAEQRKGRAGRT-G-PGVCYRLY 551 (1417)
Q Consensus 475 ~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD-~~~~~~~l~~~~ISkasa~QR~GRAGR~-g-~G~cy~L~ 551 (1417)
.|++|+.+|||||+++|+|||+| +++||++|+.+.+.|+ ...++......|.|.++|.||+|||||. + +|.||.++
T Consensus 218 ~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 218 TIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp ----CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred hhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 99999999999999999999999 9999999998887763 3334555566789999999999999998 4 89999997
Q ss_pred C
Q psy3476 552 S 552 (1417)
Q Consensus 552 t 552 (1417)
+
T Consensus 297 ~ 297 (440)
T 1yks_A 297 E 297 (440)
T ss_dssp S
T ss_pred c
Confidence 3
No 36
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.96 E-value=3.3e-29 Score=303.97 Aligned_cols=197 Identities=22% Similarity=0.228 Sum_probs=140.6
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEecccc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV 394 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~ 394 (1417)
..+.++++|||||+|......+.....++.+. .+++.++++||||++.. +..+.....+++.+.. .+ +
T Consensus 89 ~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~-~~~~~~~~~~i~~~~~-------~~-~-- 156 (431)
T 2v6i_A 89 VRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGT-TEAFPPSNSPIIDEET-------RI-P-- 156 (431)
T ss_dssp CCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTC-CCSSCCCSSCCEEEEC-------CC-C--
T ss_pred ccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc-hhhhcCCCCceeeccc-------cC-C--
Confidence 34678999999999954333333444444443 35689999999999632 1111111122221111 00 0
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
.. .. ..++..+.+ .++++||||+++++++.+++.|++ .++.+..+||+ +|+++++
T Consensus 157 ~~------~~-----~~~~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~-----~~~~v~~lhg~----~r~~~~~ 211 (431)
T 2v6i_A 157 DK------AW-----NSGYEWITE-----FDGRTVWFVHSIKQGAEIGTCLQK-----AGKKVLYLNRK----TFESEYP 211 (431)
T ss_dssp SS------CC-----SSCCHHHHS-----CSSCEEEECSSHHHHHHHHHHHHH-----TTCCEEEESTT----THHHHTT
T ss_pred HH------HH-----HHHHHHHHc-----CCCCEEEEeCCHHHHHHHHHHHHH-----cCCeEEEeCCc----cHHHHHH
Confidence 00 00 011222322 267899999999999999999987 36789999997 5888999
Q ss_pred cCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC--CCeEEEe
Q psy3476 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG--PGVCYRL 550 (1417)
Q Consensus 475 ~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy~L 550 (1417)
.|++|+.+|||||+++|+|||+| +.+||++|..+...|| ..++......|.|.++|.||+||+||.| +|.++.+
T Consensus 212 ~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 212 KCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp HHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred hhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 99999999999999999999999 9999999999998888 4556666778999999999999999998 3444443
No 37
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.96 E-value=9.2e-29 Score=306.65 Aligned_cols=116 Identities=18% Similarity=0.290 Sum_probs=79.8
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhh-------ccCCcEEEEecCCCCHHHHHHHhccCCC-CCceEEEecchhhccC
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNE-------KSQGWIVLPLHSTLSLEEQDRVFHYAPE-GLRKCIVSTNIAETSI 494 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~-------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~-G~rkVLVATnIae~GI 494 (1417)
...+++||||++++.++.+++.|..... ...+.....+||+|++++|.++++.|++ |..+|||||+++++||
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 4568999999999999999999987421 1123445566789999999999999999 9999999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
|+|++++||+ ||+|.+...|. ||+|| ||..+|.||.|+++.+..
T Consensus 467 Dlp~v~~VI~--------~d~p~s~~~~~----------Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 467 DIAECNLVIL--------YEYVGNVIKMI----------QTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp ETTSCSEEEE--------ESCCSSCCCEE----------CSSCC-CTTTSCEEEEEESCHHHH
T ss_pred ccccCCEEEE--------eCCCCCHHHHH----------HhcCc-CcCCCceEEEEEcCCCHH
Confidence 9999999999 99999888888 99999 999899999999887654
No 38
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=6.2e-30 Score=307.71 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=128.7
Q ss_pred CCCCccEEEEecCc---------ccccC-cchHHH-HHHHHhccC-----------CCCcEEEEccCC-CH----HHHHH
Q psy3476 316 FLSSYDVLVLDEIH---------ERHLH-GDFLLG-VIKCLLHST-----------AEVKIILMSATI-NI----ELFHT 368 (1417)
Q Consensus 316 ~L~~~~~VIlDEaH---------ER~l~-~d~ll~-llk~l~~~r-----------~~~qvIlmSATl-n~----~~~~~ 368 (1417)
.+.++++||+|||| +++++ .+|... +...+...+ ++.++++||||+ +. ..+..
T Consensus 136 ~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~ 215 (414)
T 3oiy_A 136 SQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRD 215 (414)
T ss_dssp TTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHH
T ss_pred ccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHH
Confidence 35578999999999 34444 444444 222222222 788999999995 31 23333
Q ss_pred HhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhh
Q psy3476 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEY 448 (1417)
Q Consensus 369 ~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~ 448 (1417)
++.-.. .........+...+... .....+...+.+. ++++||||+++++++.+++.|..
T Consensus 216 ~~~~~~--~~~~~~~~~i~~~~~~~-------------~~~~~l~~~l~~~-----~~~~lVF~~~~~~~~~l~~~L~~- 274 (414)
T 3oiy_A 216 LLNFTV--GRLVSVARNITHVRISS-------------RSKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKR- 274 (414)
T ss_dssp HHSCCS--SCCCCCCCSEEEEEESS-------------CCHHHHHHHHHHH-----CSSEEEEESSHHHHHHHHHHHHH-
T ss_pred hhccCc--Cccccccccchheeecc-------------CHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHH-
Confidence 332000 00000011111112111 1233444444441 47899999999999999999987
Q ss_pred hhccCCcEEE-EecCCCCHHHHHHHhccCCCCCceEEEe----cchhhccCCcCC-eEEEEcCCcccceecccCCCcccc
Q psy3476 449 NEKSQGWIVL-PLHSTLSLEEQDRVFHYAPEGLRKCIVS----TNIAETSITIDG-IRFVVDSGKVKEMSYDVTAKMSTL 522 (1417)
Q Consensus 449 ~~~~~~~~V~-~LHs~Ls~~eR~~v~~~f~~G~rkVLVA----TnIae~GIdIP~-V~~VIdsG~~k~~~yD~~~~~~~l 522 (1417)
.++.+. .+||. +|. ++.|++|+.+|||| |+++++|||+|+ |++||+ ||.|.+
T Consensus 275 ----~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~--------~~~p~~---- 332 (414)
T 3oiy_A 275 ----FKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF--------WGTPSG---- 332 (414)
T ss_dssp ----TTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE--------ESCCTT----
T ss_pred ----cCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE--------ECCCCC----
Confidence 567887 89985 344 99999999999999 999999999999 999999 887731
Q ss_pred ceeecCHhhHHhhcCcCCCCC-----CCeEEEecCHH
Q psy3476 523 QEFWISKASAEQRKGRAGRTG-----PGVCYRLYSEE 554 (1417)
Q Consensus 523 ~~~~ISkasa~QR~GRAGR~g-----~G~cy~L~t~~ 554 (1417)
.|..+|.||+|||||.| +|.|+.++.+.
T Consensus 333 ----~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~ 365 (414)
T 3oiy_A 333 ----PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDE 365 (414)
T ss_dssp ----TCHHHHHHHHGGGCCEETTEECCEEEEEECCCH
T ss_pred ----CCHHHHHHHhCccccCCCCCCcceEEEEEEccH
Confidence 24556669999999986 69999999543
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.96 E-value=6.9e-29 Score=308.41 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=56.4
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhh-------ccCCcEEEEecCCCCHHHHHHHhccCCC-CCceEEEecchhhccC
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNE-------KSQGWIVLPLHSTLSLEEQDRVFHYAPE-GLRKCIVSTNIAETSI 494 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~-------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~-G~rkVLVATnIae~GI 494 (1417)
..++++||||++++.++.+++.|.+... ...+.....+||+|++++|..+++.|++ |..+|||||+++++||
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 4468999999999999999999976311 0124455667899999999999999999 9999999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
|+|++++||+ ||+|.+.. +|.||+|| ||..+|.||.|+++.+.+
T Consensus 468 Dip~v~~VI~--------~d~p~s~~----------~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 468 DIVQCNLVVL--------YEYSGNVT----------KMIQVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp -----CEEEE--------ETCCSCHH----------HHHHC---------CCEEEEESCHHHH
T ss_pred CchhCCEEEE--------eCCCCCHH----------HHHHhcCC-CCCCCceEEEEEeCcchH
Confidence 9999999999 99886554 45599999 999999999999887664
No 40
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.6e-28 Score=297.21 Aligned_cols=112 Identities=22% Similarity=0.333 Sum_probs=98.3
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecC--------CCCHHHHHHHhccCCCCCceEEEecchhhccC
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHS--------TLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs--------~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GI 494 (1417)
..++++||||++++.++.+++.|.. .++.+..+|| +++.++|..+++.|++|..+|||||+++++||
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~-----~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gl 433 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVK-----DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGL 433 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHH-----TTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGG
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHH-----cCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCC
Confidence 3578999999999999999999987 4788999999 99999999999999999999999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
|+|++++||. ||++. +.+++.||+|||||.|+|.+|+|+++...+
T Consensus 434 dl~~~~~Vi~--------~d~~~----------~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~e 478 (494)
T 1wp9_A 434 DVPEVDLVVF--------YEPVP----------SAIRSIQRRGRTGRHMPGRVIILMAKGTRD 478 (494)
T ss_dssp GSTTCCEEEE--------SSCCH----------HHHHHHHHHTTSCSCCCSEEEEEEETTSHH
T ss_pred CchhCCEEEE--------eCCCC----------CHHHHHHHHhhccCCCCceEEEEEecCCHH
Confidence 9999999998 77764 455666999999999999999999876554
No 41
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.96 E-value=1.8e-28 Score=311.32 Aligned_cols=200 Identities=21% Similarity=0.233 Sum_probs=143.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEecccc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV 394 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~ 394 (1417)
..+.++++|||||+|+.....+.....++.+.. +.+.++++||||++.. +..+.....++..+.. ...
T Consensus 328 ~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~-i~~~~~~~~~i~~v~~----------~~~ 395 (673)
T 2wv9_A 328 LRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGT-SDPFPDTNSPVHDVSS----------EIP 395 (673)
T ss_dssp SCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCCCSSCEEEEEC----------CCC
T ss_pred cccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChh-hhhhcccCCceEEEee----------ecC
Confidence 357789999999999653333444455554432 3678999999999632 1111111222221111 000
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
.. .. ...+..+. ..++++||||+++++++.+++.|++ .++.+..+||. +|.++++
T Consensus 396 ~~------~~-----~~~l~~l~-----~~~~~~lVF~~s~~~~e~la~~L~~-----~g~~v~~lHg~----eR~~v~~ 450 (673)
T 2wv9_A 396 DR------AW-----SSGFEWIT-----DYAGKTVWFVASVKMSNEIAQCLQR-----AGKRVIQLNRK----SYDTEYP 450 (673)
T ss_dssp SS------CC-----SSCCHHHH-----SCCSCEEEECSSHHHHHHHHHHHHT-----TTCCEEEECSS----SHHHHGG
T ss_pred HH------HH-----HHHHHHHH-----hCCCCEEEEECCHHHHHHHHHHHHh-----CCCeEEEeChH----HHHHHHH
Confidence 00 00 01122222 2368999999999999999999987 46889999994 7999999
Q ss_pred cCCCCCceEEEecchhhccCCcCCeEEEEcCCcccce--ecccCCCccccceeecCHhhHHhhcCcCCCC-C-CCeEEEe
Q psy3476 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEM--SYDVTAKMSTLQEFWISKASAEQRKGRAGRT-G-PGVCYRL 550 (1417)
Q Consensus 475 ~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~--~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~-g-~G~cy~L 550 (1417)
.|++|+.+|||||+++|+||||| +++|||+|+.... .||...++..+...|.|.++|.||+|||||. + +|.||.+
T Consensus 451 ~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 451 KCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp GGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred HHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 99999999999999999999999 9999999876653 3566555555567899999999999999999 4 8999999
Q ss_pred cC
Q psy3476 551 YS 552 (1417)
Q Consensus 551 ~t 552 (1417)
+.
T Consensus 530 ~~ 531 (673)
T 2wv9_A 530 GG 531 (673)
T ss_dssp CS
T ss_pred Ee
Confidence 73
No 42
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.95 E-value=6e-29 Score=282.10 Aligned_cols=182 Identities=23% Similarity=0.378 Sum_probs=160.2
Q ss_pred CcCCCC-CCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCcc
Q psy3476 587 VRKFPF-LEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665 (1417)
Q Consensus 587 ~~~f~~-l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F 665 (1417)
...|+| ++||+.+++..|++.|..+||||.+++||++|+.|++||++|++||||+.|..++|++++++|+|+||++++|
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f 84 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF 84 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCB
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCccc
Confidence 356788 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChhHHHHHhhcccCCCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCCCcC
Q psy3476 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITD 745 (1417)
Q Consensus 666 ~~~~~~~~~~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~gl~~~ 745 (1417)
..|..++++++++|+.|....|||+|++|+|++|.+.+ ..++||++|+|++++|+++.++|+||.++|++.|+...
T Consensus 85 ~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~----~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~ 160 (270)
T 3i4u_A 85 YRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNK----FSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVV 160 (270)
T ss_dssp CCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTT----TCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcC----chhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 99988888888999999999999999999999998642 35689999999999999999999999999999998655
Q ss_pred CCCCCCChhHHHHHHhcCchHHHHHHHhh
Q psy3476 746 IPGPDASLSSRERALRHGEIKLLQAIKRK 774 (1417)
Q Consensus 746 ~~~~~~~~~s~~ral~~G~~~~L~~l~~~ 774 (1417)
+++. +.+.+.+++.+|++.+++....+
T Consensus 161 s~~~--~~~~i~~~L~aG~~~nvA~~~~~ 187 (270)
T 3i4u_A 161 SCGK--STVRVQKAICSGFFRNAAKKDPQ 187 (270)
T ss_dssp CCTT--CTHHHHHHHHHHHGGGEEEECSS
T ss_pred CCcc--hHHHHHHHHHHHhHHHHheeCCC
Confidence 5433 46789999999999998865443
No 43
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.95 E-value=5.4e-29 Score=319.26 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=85.8
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhh-ccCCcEEEEecCC--------CCHHHHHHHhccCCCCCceEEEecchhhccCC
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNE-KSQGWIVLPLHST--------LSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~-~~~~~~V~~LHs~--------Ls~~eR~~v~~~f~~G~rkVLVATnIae~GId 495 (1417)
++++||||++++.++.+++.|..... ...++.+..+||+ |++++|.++++.|++|..+|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 68999999999999999999986311 1126889999999 99999999999999999999999999999999
Q ss_pred cCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEec
Q psy3476 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLY 551 (1417)
Q Consensus 496 IP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~ 551 (1417)
+|++++||+ ||.|.+. .++.||+|||||.| +.++.++
T Consensus 480 ip~v~~VI~--------~d~p~s~----------~~~~Qr~GRArr~g-~~~~l~~ 516 (699)
T 4gl2_A 480 IKECNIVIR--------YGLVTNE----------IAMVQARGRARADE-STYVLVA 516 (699)
T ss_dssp CCSCCCCEE--------ESCCCCH----------HHHHHHHTTSCSSS-CEEEEEE
T ss_pred cccCCEEEE--------eCCCCCH----------HHHHHHcCCCCCCC-ceEEEEE
Confidence 999999999 9987654 45559999998876 4444333
No 44
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.95 E-value=3.8e-27 Score=306.75 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=62.2
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhh-------ccCCcEEEEecCCCCHHHHHHHhccCCC-CCceEEEecchhhccC
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNE-------KSQGWIVLPLHSTLSLEEQDRVFHYAPE-GLRKCIVSTNIAETSI 494 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~-------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~-G~rkVLVATnIae~GI 494 (1417)
..++++||||++++.++.+++.|.+... ...+.....+||+|++++|..+++.|++ |..+|||||+++++||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 4568999999999999999999976210 1124456677999999999999999999 9999999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
|+|++++||+ ||++.+.. ++.||+|| ||..+|.||.|+++.+..
T Consensus 709 Dlp~v~~VI~--------yd~p~s~~----------~~iQr~GR-GR~~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 709 DIVQCNLVVL--------YEYSGNVT----------KMIQVRGR-GRAAGSKCILVTSKTEVV 752 (797)
T ss_dssp --CCCSEEEE--------ESCCSCHH----------HHHTC--------CCCEEEEECCHHHH
T ss_pred CchhCCEEEE--------eCCCCCHH----------HHHHhcCC-CCCCCceEEEEEeCCcHH
Confidence 9999999999 99876544 45599999 999999999999887654
No 45
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=1.6e-27 Score=306.07 Aligned_cols=198 Identities=21% Similarity=0.249 Sum_probs=131.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEe---CCcccceeEEec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKV---PGRLYPIQLEYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v---~gr~~pv~v~~~ 391 (1417)
..+.++++||+||+|...... ...+.....+.++++||||+..+.+...+.+...+..+ +....|+...+.
T Consensus 486 ~~~~~l~lVVIDEaHr~g~~q------r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~ 559 (780)
T 1gm5_A 486 VHFKNLGLVIIDEQHRFGVKQ------REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLV 559 (780)
T ss_dssp CCCSCCCEEEEESCCCC-----------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCC
T ss_pred hhccCCceEEecccchhhHHH------HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEe
Confidence 457789999999999422111 11122233578999999999666555333232222222 111223333222
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHH--------HHHHHHHHHhhhhccCCcEEEEecCC
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE--------ISSIVRAAQEYNEKSQGWIVLPLHST 463 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~e--------ie~la~~L~~~~~~~~~~~V~~LHs~ 463 (1417)
+ ......++..+.+.+ ..+++++|||++.++ ++.+++.|.+. ..+++.+..+||+
T Consensus 560 ~-------------~~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~--~~~~~~v~~lHG~ 622 (780)
T 1gm5_A 560 P-------------MDRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE--VFPEFKLGLMHGR 622 (780)
T ss_dssp C-------------SSTHHHHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGS--CC---CBCCCCSS
T ss_pred c-------------cchHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh--hcCCCcEEEEeCC
Confidence 1 112334555565554 346789999997765 34444444330 1245789999999
Q ss_pred CCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 464 LSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 464 Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
|++++|..+++.|++|+.+|||||+++++|||+|++++||+ ||++.. +.+++.||+||+||.|
T Consensus 623 m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi--------~d~~r~---------~l~~l~Qr~GRaGR~g 685 (780)
T 1gm5_A 623 LSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI--------ENPERF---------GLAQLHQLRGRVGRGG 685 (780)
T ss_dssp SCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB--------CSCSSS---------CTTHHHHHHHTSCCSS
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE--------eCCCCC---------CHHHHHHHhcccCcCC
Confidence 99999999999999999999999999999999999999998 777641 3456679999999998
Q ss_pred -CCeEEEecC
Q psy3476 544 -PGVCYRLYS 552 (1417)
Q Consensus 544 -~G~cy~L~t 552 (1417)
+|.||.+++
T Consensus 686 ~~g~~ill~~ 695 (780)
T 1gm5_A 686 QEAYCFLVVG 695 (780)
T ss_dssp TTCEEECCCC
T ss_pred CCCEEEEEEC
Confidence 899999997
No 46
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.94 E-value=3e-26 Score=302.29 Aligned_cols=127 Identities=20% Similarity=0.304 Sum_probs=69.3
Q ss_pred HHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh-------ccCCcEEEEecCCCCHHHHHHHhccCCC-CCceE
Q psy3476 412 ILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE-------KSQGWIVLPLHSTLSLEEQDRVFHYAPE-GLRKC 483 (1417)
Q Consensus 412 il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~-------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~-G~rkV 483 (1417)
+.+.+.+.+....++++||||++++.++.+++.|.+... ...+.....+||+|++.+|..+++.|++ |..+|
T Consensus 618 L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~V 697 (936)
T 4a2w_A 618 LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRL 697 (936)
T ss_dssp HHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSE
T ss_pred HHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeE
Confidence 334444444445578999999999999999999987310 0124456677999999999999999999 99999
Q ss_pred EEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 484 IVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 484 LVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
||||+++++|||+|++++||+ ||++.+...|+ ||+|| ||..+|.||.|+++.+.+
T Consensus 698 LVaT~~~~eGIDlp~v~~VI~--------yD~p~s~~~~i----------Qr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 698 LIATSVADEGIDIVQCNLVVL--------YEYSGNVTKMI----------QVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp EEEECC------CCCCSEEEE--------ESCCSCSHHHH----------CC--------CCCEEEEESCHHHH
T ss_pred EEEeCchhcCCcchhCCEEEE--------eCCCCCHHHHH----------HhcCC-CCCCCCEEEEEEeCCCHH
Confidence 999999999999999999999 99887655555 99999 999999999999887664
No 47
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.93 E-value=2.3e-26 Score=306.09 Aligned_cols=262 Identities=13% Similarity=0.095 Sum_probs=176.4
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEE
Q psy3476 37 SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGY 114 (1417)
Q Consensus 37 ~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy 114 (1417)
....+.+|.++++.+.++++++++||||||||+.....++.. ...+++++.|+|.+|.|+++++.. ++ ..|-.|+.
T Consensus 76 gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~v~~ 153 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK-LA-DEKVKIFG 153 (1104)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSCEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH-hh-CCCCeEEE
Confidence 345678999999999999999999999999999655444442 346899999999999999998876 44 44555655
Q ss_pred EEeeccc---------c-cCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHh
Q psy3476 115 QIRFEKH---------R-REKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRR 184 (1417)
Q Consensus 115 ~ir~e~~---------~-~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (1417)
..+..+. . ....+|+++|+|.|++.+..
T Consensus 154 l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~------------------------------------------ 191 (1104)
T 4ddu_A 154 FYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK------------------------------------------ 191 (1104)
T ss_dssp ECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH------------------------------------------
T ss_pred EeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh------------------------------------------
Confidence 4433221 0 11255666666665543210
Q ss_pred hhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCc
Q psy3476 185 KMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264 (1417)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~ 264 (1417)
T Consensus 192 -------------------------------------------------------------------------------- 191 (1104)
T 4ddu_A 192 -------------------------------------------------------------------------------- 191 (1104)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcc---------cccC-
Q psy3476 265 CGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHE---------RHLH- 334 (1417)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHE---------R~l~- 334 (1417)
..+.++++|||||||. |+++
T Consensus 192 --------------------------------------------------l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 192 --------------------------------------------------LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp --------------------------------------------------HHTSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred --------------------------------------------------hcccCcCEEEEeCCCccccccccchhhhHh
Confidence 2245788999999982 3333
Q ss_pred cchHHH-HHHHHhccC-----------CCCcEEEEccCC-CH----HHHHHHhccCceEEEeCCc---ccceeEEecccc
Q psy3476 335 GDFLLG-VIKCLLHST-----------AEVKIILMSATI-NI----ELFHTYFNRIAKIIKVPGR---LYPIQLEYHPIV 394 (1417)
Q Consensus 335 ~d~ll~-llk~l~~~r-----------~~~qvIlmSATl-n~----~~~~~~f~~~~~vi~v~gr---~~pv~v~~~~~~ 394 (1417)
.+|... +...+...+ .+.|+++||||+ +. ..+..++. +.+... ...+...+...
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-----i~v~~~~~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVGRLVSVARNITHVRISS- 295 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-----CCCCBCCCCCCCEEEEEESC-
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-----EEeccCCCCcCCceeEEEec-
Confidence 344444 333333223 688999999995 31 23333331 111111 11111112111
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEE-EecCCCCHHHHHHHh
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVL-PLHSTLSLEEQDRVF 473 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~-~LHs~Ls~~eR~~v~ 473 (1417)
.....+...+.+. ++++||||++++.++.+++.|.. .++.+. .+|| +|++ +
T Consensus 296 ------------~k~~~L~~ll~~~-----~~~~LVF~~s~~~a~~l~~~L~~-----~g~~~~~~lhg-----~rr~-l 347 (1104)
T 4ddu_A 296 ------------RSKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKR-----FKFNVGETWSE-----FEKN-F 347 (1104)
T ss_dssp ------------CCHHHHHHHHHHH-----CSSEEEEESSSHHHHHHHHHHHH-----TTCCEEESSSS-----HHHH-H
T ss_pred ------------CHHHHHHHHHHhc-----CCCEEEEECcHHHHHHHHHHHHh-----CCCCeeeEecC-----cHHH-H
Confidence 1233444555442 48999999999999999999987 567888 9999 2555 9
Q ss_pred ccCCCCCceEEEe----cchhhccCCcCC-eEEEEcCC
Q psy3476 474 HYAPEGLRKCIVS----TNIAETSITIDG-IRFVVDSG 506 (1417)
Q Consensus 474 ~~f~~G~rkVLVA----TnIae~GIdIP~-V~~VIdsG 506 (1417)
+.|++|+.+|||| |+++++|||||+ |++||+.|
T Consensus 348 ~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d 385 (1104)
T 4ddu_A 348 EDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWG 385 (1104)
T ss_dssp HHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEES
T ss_pred HHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEEC
Confidence 9999999999999 999999999999 99999933
No 48
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.93 E-value=2.1e-25 Score=298.69 Aligned_cols=198 Identities=17% Similarity=0.168 Sum_probs=140.3
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeC---CcccceeEEec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVP---GRLYPIQLEYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~---gr~~pv~v~~~ 391 (1417)
..+.++++|||||+|. +.. .....+...+.+.++++||||+....+...+........+. ....++...+.
T Consensus 721 ~~~~~l~lvIiDEaH~--~g~----~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~ 794 (1151)
T 2eyq_A 721 VKFKDLGLLIVDEEHR--FGV----RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR 794 (1151)
T ss_dssp CCCSSEEEEEEESGGG--SCH----HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEE
T ss_pred ccccccceEEEechHh--cCh----HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEe
Confidence 3467899999999993 221 22333444456789999999996665555443222221111 11223332222
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
+.. ...+...+.+.+ ..+++++|||+++++++.+++.|++.. ++..+..+||+|++.+|.+
T Consensus 795 ~~~--------------~~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~---p~~~v~~lhg~~~~~eR~~ 855 (1151)
T 2eyq_A 795 EYD--------------SMVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELER 855 (1151)
T ss_dssp ECC--------------HHHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHC---TTSCEEECCSSCCHHHHHH
T ss_pred cCC--------------HHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhC---CCCeEEEEeCCCCHHHHHH
Confidence 110 112233333333 246899999999999999999998743 4678999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEe
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRL 550 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L 550 (1417)
+++.|++|+.+|||||+++++|||+|++++||. ++... .+.+++.||+||+||.| +|.||.+
T Consensus 856 il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi--------~~~~~---------~~l~~l~Qr~GRvgR~g~~g~~~ll 918 (1151)
T 2eyq_A 856 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERADH---------FGLAQLHQLRGRVGRSHHQAYAWLL 918 (1151)
T ss_dssp HHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE--------TTTTS---------SCHHHHHHHHTTCCBTTBCEEEEEE
T ss_pred HHHHHHcCCCcEEEECCcceeeecccCCcEEEE--------eCCCC---------CCHHHHHHHHhccCcCCCceEEEEE
Confidence 999999999999999999999999999999996 54422 13456779999999999 8999999
Q ss_pred cCHH
Q psy3476 551 YSEE 554 (1417)
Q Consensus 551 ~t~~ 554 (1417)
+++.
T Consensus 919 ~~~~ 922 (1151)
T 2eyq_A 919 TPHP 922 (1151)
T ss_dssp ECCG
T ss_pred ECCc
Confidence 8653
No 49
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.93 E-value=2.5e-25 Score=275.01 Aligned_cols=205 Identities=13% Similarity=0.072 Sum_probs=128.4
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCH-----HHHHHHhccCceEEEeCCc-------c
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINI-----ELFHTYFNRIAKIIKVPGR-------L 383 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~-----~~~~~~f~~~~~vi~v~gr-------~ 383 (1417)
.+.++++||+||+| +... ..+.+.+....+..++++||||++. -.+..+++ ..++.++.. .
T Consensus 222 ~~~~~~liIiDE~H-~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 294 (510)
T 2oca_A 222 WFSQFGMMMNDECH-LATG----KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFG--EIFKPVTTSKLMEDGQV 294 (510)
T ss_dssp GGGGEEEEEEETGG-GCCH----HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHC--SEECCCCCC--------
T ss_pred hhhcCCEEEEECCc-CCCc----ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhC--CeEEeeCHHHHhhCCcC
Confidence 34568999999999 3332 2233334455677899999999932 22344552 222222211 1
Q ss_pred cceeEEeccccc----------ccccc---ccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh
Q psy3476 384 YPIQLEYHPIVE----------LDRTK---SEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE 450 (1417)
Q Consensus 384 ~pv~v~~~~~~~----------~~~~~---~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~ 450 (1417)
.|..+....... ..+.. ...........+...+.+... ..+..++||++ .++++.+++.|.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~ivf~~-~~~~~~l~~~L~~--- 369 (510)
T 2oca_A 295 TELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQ-KDENAFVMFKH-VSHGKAIFDLIKN--- 369 (510)
T ss_dssp -CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHT-TTCEEEEEESS-HHHHHHHHHHHHT---
T ss_pred CCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHh-cCCCeEEEEec-HHHHHHHHHHHHH---
Confidence 111111110000 00000 000000011223334444332 23445666666 8889989998876
Q ss_pred ccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEec-chhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCH
Q psy3476 451 KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST-NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISK 529 (1417)
Q Consensus 451 ~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVAT-nIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISk 529 (1417)
.+..+..+||+++.++|.++++.|++|+.+||||| +++++|+|+|++++||. |+++.+.
T Consensus 370 --~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~--------~~~~~s~---------- 429 (510)
T 2oca_A 370 --EYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL--------AHGVKSK---------- 429 (510)
T ss_dssp --TCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE--------SSCCCSC----------
T ss_pred --cCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE--------eCCCCCH----------
Confidence 33479999999999999999999999999999999 99999999999999998 7777554
Q ss_pred hhHHhhcCcCCCCCCCe-EEEecC
Q psy3476 530 ASAEQRKGRAGRTGPGV-CYRLYS 552 (1417)
Q Consensus 530 asa~QR~GRAGR~g~G~-cy~L~t 552 (1417)
+++.||+||+||.|+|. ++.+|+
T Consensus 430 ~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 430 IIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHHHhcccccCCCCceEEEEE
Confidence 45559999999999543 555554
No 50
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.92 E-value=7.2e-26 Score=277.09 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=89.6
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFV 502 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~V 502 (1417)
..++++||||++.+.++.+++.|. +..+||+++..+|.++++.|++|..+|||||+++++|+|+|++++|
T Consensus 347 ~~~~k~lvF~~~~~~~~~l~~~l~----------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~V 416 (472)
T 2fwr_A 347 HRKDKIIIFTRHNELVYRISKVFL----------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVG 416 (472)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHTT----------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEE
T ss_pred CCCCcEEEEECCHHHHHHHHHHhC----------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEE
Confidence 346899999999999999988762 4568999999999999999999999999999999999999999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCC----eEEEecCHH
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG----VCYRLYSEE 554 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G----~cy~L~t~~ 554 (1417)
|+ ||++.+. .++.||+|||||.|+| .+|.++++.
T Consensus 417 i~--------~~~~~s~----------~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 417 VI--------MSGSGSA----------REYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp EE--------ECCSSCC----------HHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred EE--------ECCCCCH----------HHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 98 8876544 4555999999999976 466676543
No 51
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.91 E-value=9e-24 Score=267.10 Aligned_cols=106 Identities=23% Similarity=0.248 Sum_probs=93.9
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC-------
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID------- 497 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP------- 497 (1417)
+.++||||+|++.++.+++.|.. .++.+..|||++.+.++..+.++++.| .|+||||+|+||+||+
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~-----~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~ 504 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKN-----KGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKE 504 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHT-----TTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHH-----CCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhh
Confidence 56899999999999999999987 678899999999999998888888776 6999999999999999
Q ss_pred -CeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 498 -GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 498 -~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
++.+||+ ||.|.+...|. ||+||+||.| +|.++.+++.++
T Consensus 505 ~ggl~VIn--------~d~p~s~r~y~----------hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 505 LGGLAVVG--------TERHESRRIDN----------QLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp GTSEEEEE--------SSCCSSHHHHH----------HHHTTSSGGGCCEEEEEEEETTS
T ss_pred cCCcEEEE--------ecCCCCHHHHH----------hhcCccccCCCCCeEEEEecHHH
Confidence 8999999 88877555555 9999999999 899998887654
No 52
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.91 E-value=2.8e-25 Score=295.68 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=60.0
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEe----cchhhccCCcCCe-
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS----TNIAETSITIDGI- 499 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVA----TnIae~GIdIP~V- 499 (1417)
++++||||+++++++.+++.|.. . +.+..+||++ ..+++.|++|+.+|||| ||++++|||+|+|
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~-----~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI 343 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKN-----K-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERI 343 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTT-----S-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTC
T ss_pred CCCEEEEEcCHHHHHHHHHHHhh-----c-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcc
Confidence 57899999999999999998876 3 7899999998 47788899999999999 9999999999995
Q ss_pred EEEEcCCcc
Q psy3476 500 RFVVDSGKV 508 (1417)
Q Consensus 500 ~~VIdsG~~ 508 (1417)
++||+.|..
T Consensus 344 ~~VI~~~~P 352 (1054)
T 1gku_B 344 RFAVFVGCP 352 (1054)
T ss_dssp CEEEEESCC
T ss_pred cEEEEeCCC
Confidence 999995544
No 53
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=7e-24 Score=236.38 Aligned_cols=178 Identities=39% Similarity=0.661 Sum_probs=156.2
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-------CCcEEEecchHHHHHHHHHH
Q psy3476 27 TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-------FQRIACTQPRRIACISLSKR 99 (1417)
Q Consensus 27 ~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-------~~~i~~tqPrr~aa~~~a~r 99 (1417)
.+.++.+.|..+|++.+|+++++.+.++++++|+|||||||||++++++++.. ..++++++|+|.++.+++++
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~ 128 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAER 128 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999998887642 23799999999999999999
Q ss_pred HHHHHccccCCeEEEEEeeccccc-CCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhh
Q psy3476 100 VAYETLSQYSNLVGYQIRFEKHRR-EKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 178 (1417)
Q Consensus 100 va~e~~~~~g~~vGy~ir~e~~~~-~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1417)
++.+++..+|..+||.++++.... ..++|+|+|+|+|++.+..
T Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~------------------------------------ 172 (235)
T 3llm_A 129 VAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA------------------------------------ 172 (235)
T ss_dssp HHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH------------------------------------
T ss_pred HHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh------------------------------------
Confidence 999999999999999999888765 6789999999999986421
Q ss_pred hhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeec
Q psy3476 179 EAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGV 258 (1417)
Q Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~ 258 (1417)
T Consensus 173 -------------------------------------------------------------------------------- 172 (235)
T 3llm_A 173 -------------------------------------------------------------------------------- 172 (235)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchH
Q psy3476 259 ISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFL 338 (1417)
Q Consensus 259 ~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~l 338 (1417)
.++++++||+||+|+|+++.++.
T Consensus 173 ---------------------------------------------------------~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 173 ---------------------------------------------------------GIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp ---------------------------------------------------------CCTTCCEEEECCTTSCCHHHHHH
T ss_pred ---------------------------------------------------------hhcCCcEEEEECCccCCcchHHH
Confidence 25578999999999888999999
Q ss_pred HHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEE
Q psy3476 339 LGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIK 378 (1417)
Q Consensus 339 l~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~ 378 (1417)
...++.+....++.|+++||||++.+.+++|| .+++++.
T Consensus 196 ~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~-~~~pvi~ 234 (235)
T 3llm_A 196 LVVLRDVVQAYPEVRIVLMSATIDTSMFCEYF-FNCPIIE 234 (235)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSSCCHHHHHHT-TSCCCEE
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCHHHHHHHc-CCCCEEe
Confidence 88888888888899999999999888899999 5666664
No 54
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.88 E-value=4.6e-22 Score=250.88 Aligned_cols=168 Identities=18% Similarity=0.189 Sum_probs=124.3
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++.+||+|. ..+.|.+.+ +..++.+|.. .|+.-...+...... ....+..++..+.... ..+.++|
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY--~l~vv~IPtn-~p~~R~d~~d~v~~~------~~~K~~al~~~i~~~~--~~gqpvL 445 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIY--KLDTVVVPTN-RPMIRKDLPDLVYMT------EAEKIQAIIEDIKERT--AKGQPVL 445 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHH--CCEEEECCCS-SCCCCEECCCEEESS------HHHHHHHHHHHHHHHH--TTTCCEE
T ss_pred hhhhcCCCCchhHHHHHHHHh--CCcEEEcCCC-CCceeecCCcEEEeC------HHHHHHHHHHHHHHHh--cCCCCEE
Confidence 4889999999 577888888 4667777742 232211111000000 0012334444444332 2356899
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCC-----------
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDG----------- 498 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~----------- 498 (1417)
|||+|++.++.+++.|.+ .++.+..|||+....++..+.++++.| .|+||||+|+||+||+.
T Consensus 446 Vft~sie~se~Ls~~L~~-----~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~ 518 (853)
T 2fsf_A 446 VGTISIEKSELVSNELTK-----AGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAAL 518 (853)
T ss_dssp EEESSHHHHHHHHHHHHH-----TTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHC
T ss_pred EEECcHHHHHHHHHHHHH-----CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhc
Confidence 999999999999999988 678899999999999999999999998 69999999999999997
Q ss_pred ---------------------e-----EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEec
Q psy3476 499 ---------------------I-----RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLY 551 (1417)
Q Consensus 499 ---------------------V-----~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~ 551 (1417)
| .+||+ |+.|.+ ...+.||+||+||.| ||.+..++
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~--------te~pes----------~riy~qr~GRTGRqGd~G~s~~fl 580 (853)
T 2fsf_A 519 ENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG--------TERHES----------RRIDNQLRGRSGRQGDAGSSRFYL 580 (853)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE--------SSCCSS----------HHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred ccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE--------ccCCCC----------HHHHHhhccccccCCCCeeEEEEe
Confidence 4 79999 777664 445559999999999 89998888
Q ss_pred CHHH
Q psy3476 552 SEEQ 555 (1417)
Q Consensus 552 t~~~ 555 (1417)
+.++
T Consensus 581 s~eD 584 (853)
T 2fsf_A 581 SMED 584 (853)
T ss_dssp ETTS
T ss_pred cccH
Confidence 7654
No 55
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.88 E-value=7.2e-23 Score=257.81 Aligned_cols=102 Identities=15% Similarity=0.093 Sum_probs=83.6
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhc---cCCcEEEEecCCCCHHHHHHHhccCCCCCce---EEEecchhhccCCcC
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEK---SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRK---CIVSTNIAETSITID 497 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~---~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rk---VLVATnIae~GIdIP 497 (1417)
..+++||||++++.++.+++.|.+.... ...-.+..+||.++ ++|..+++.|++|..+ |+|||+++++|||+|
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip 516 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccch
Confidence 4579999999999999999999875321 12234778899976 4799999999998765 889999999999999
Q ss_pred CeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCC
Q psy3476 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544 (1417)
Q Consensus 498 ~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~ 544 (1417)
++++||. |+++.+ ...+.||+||+||.++
T Consensus 517 ~v~~Vi~--------~~~~~s----------~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 517 TCKNVVL--------ARVVNS----------MSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TEEEEEE--------ESCCCC----------HHHHHHHHTTSCCCBG
T ss_pred heeEEEE--------EecCCC----------hHHHHHHHhhhcccCc
Confidence 9999998 777654 4556699999999874
No 56
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.88 E-value=5.9e-22 Score=249.99 Aligned_cols=119 Identities=20% Similarity=0.235 Sum_probs=97.3
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
..++..+.+.. ..+.++||||+|++.++.+++.|.+ .++.+..|||+....++..+.++++.| .|+||||+
T Consensus 447 ~al~~~i~~~~--~~gqpvLVft~Sie~sE~Ls~~L~~-----~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnm 517 (922)
T 1nkt_A 447 IAVVDDVAERY--AKGQPVLIGTTSVERSEYLSRQFTK-----RRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNM 517 (922)
T ss_dssp HHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHH-----TTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETT
T ss_pred HHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHH-----CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecch
Confidence 34444444332 2345899999999999999999988 678899999999888888888999988 69999999
Q ss_pred hhccCCcCCe----------------------------------------------------EEEEcCCcccceecccCC
Q psy3476 490 AETSITIDGI----------------------------------------------------RFVVDSGKVKEMSYDVTA 517 (1417)
Q Consensus 490 ae~GIdIP~V----------------------------------------------------~~VIdsG~~k~~~yD~~~ 517 (1417)
|+||+||+.+ .+||+ |+.|.
T Consensus 518 AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~--------te~pe 589 (922)
T 1nkt_A 518 AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG--------TERHE 589 (922)
T ss_dssp CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE--------CSCCS
T ss_pred hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe--------ccCCC
Confidence 9999999975 69999 77766
Q ss_pred CccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 518 KMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 518 ~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
+ +..+.||+||+||.| ||.+..+++.++
T Consensus 590 s----------~riy~qr~GRTGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 590 S----------RRIDNQLRGRSGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp S----------HHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred C----------HHHHHHHhcccccCCCCeeEEEEechhH
Confidence 4 445559999999999 899988877543
No 57
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.85 E-value=1.2e-22 Score=223.13 Aligned_cols=162 Identities=22% Similarity=0.333 Sum_probs=136.1
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
.++++||||+++++++.+++.|.. .++.+..+||+|++++|..+++.|++|.++|||||+++++|+|+|++++||
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~-----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi 104 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLR-----LGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVV 104 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHH-----HTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHH-----cCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEE
Confidence 468999999999999999999987 468899999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh--------------hccCCCccc
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL--------------AEYSTPEIR 568 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l--------------~~~~~pEI~ 568 (1417)
+ ||.|. |.++|.||+|||||.| +|.|+.++++.+...+ .....+++.
T Consensus 105 ~--------~~~p~----------~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ei~ 166 (212)
T 3eaq_A 105 H--------YRLPD----------RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVL 166 (212)
T ss_dssp E--------SSCCS----------SHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHHHH
T ss_pred E--------CCCCc----------CHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHHHH
Confidence 9 77765 5666779999999999 8999999998764322 223445677
Q ss_pred ccChHHHHHHHHhhCCCCCcCC-----CCCCCCCcchhHHHHHHH
Q psy3476 569 RVSIDSLLLSLVCMGLGDVRKF-----PFLEAPPAENIESSVRSL 608 (1417)
Q Consensus 569 r~~L~~~lL~lk~lgi~~~~~f-----~~l~pP~~~~l~~Al~~L 608 (1417)
+..+..+++.++.++..+...| .++++|+.+.+..|+..|
T Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 167 EAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp HHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 7788888888888776555555 567888888888888765
No 58
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.82 E-value=6.4e-22 Score=228.48 Aligned_cols=166 Identities=21% Similarity=0.321 Sum_probs=138.1
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEc
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVD 504 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VId 504 (1417)
++++||||+++++++.+++.|.. .++.+.++||+|++.+|..+++.|++|.++||||||++++|||||++++||+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~-----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR-----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVH 102 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT-----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHh-----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEE
Confidence 78999999999999999999977 5788999999999999999999999999999999999999999999999999
Q ss_pred CCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH--------------hhccCCCcccc
Q psy3476 505 SGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL--------------LAEYSTPEIRR 569 (1417)
Q Consensus 505 sG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~--------------l~~~~~pEI~r 569 (1417)
||.|.+ .++|.||+|||||.| +|.||.++++.+... +.....+||.+
T Consensus 103 --------~d~p~s----------~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~ 164 (300)
T 3i32_A 103 --------YRMPDR----------AEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLE 164 (300)
T ss_dssp --------SSCCSS----------TTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHHHHH
T ss_pred --------cCCCCC----------HHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHHHHH
Confidence 777664 445559999999998 899999998776432 22235567888
Q ss_pred cChHHHHHHHHhhCCCCCcCC-----CCCCCCCcchhHHHHHHHHhcCC
Q psy3476 570 VSIDSLLLSLVCMGLGDVRKF-----PFLEAPPAENIESSVRSLTQHGA 613 (1417)
Q Consensus 570 ~~L~~~lL~lk~lgi~~~~~f-----~~l~pP~~~~l~~Al~~L~~lGa 613 (1417)
..+..+++.++.++..+...| .++++|+.+.+..|+..|.....
T Consensus 165 ~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 165 AKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 889999999987765555555 46778999999999999966654
No 59
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.81 E-value=3.9e-19 Score=220.05 Aligned_cols=169 Identities=21% Similarity=0.265 Sum_probs=121.3
Q ss_pred CCcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcE
Q psy3476 351 EVKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428 (1417)
Q Consensus 351 ~~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~i 428 (1417)
-.|+.+||+|+ ..+.|.+.+ +..++.+|...-............. ....+..++..+.+.. ..+.++
T Consensus 409 Y~kL~GMTGTa~te~~Ef~~iY--~l~vv~IPtnkp~~R~d~~d~vy~t-------~~eK~~al~~~I~~~~--~~gqpV 477 (822)
T 3jux_A 409 YEKLAGMTGTAKTEESEFVQVY--GMEVVVIPTHKPMIRKDHDDLVFRT-------QKEKYEKIVEEIEKRY--KKGQPV 477 (822)
T ss_dssp SSEEEEEESSCGGGHHHHHHHS--CCCEEECCCSSCCCCEECCCEEESS-------HHHHHHHHHHHHHHHH--HHTCCE
T ss_pred hhHHeEECCCCchHHHHHHHHh--CCeEEEECCCCCcceeecCcEEEec-------HHHHHHHHHHHHHHHh--hCCCCE
Confidence 35799999999 466787777 4667777643211111110000000 0012334455554432 235689
Q ss_pred EEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC--------CeE
Q psy3476 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID--------GIR 500 (1417)
Q Consensus 429 LVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP--------~V~ 500 (1417)
||||+|++.++.+++.|.+ .++.+..+||+....++..+.++++.| .|+||||+|+||+||+ +..
T Consensus 478 LVFt~S~e~sE~Ls~~L~~-----~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~Ggl 550 (822)
T 3jux_A 478 LVGTTSIEKSELLSSMLKK-----KGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGL 550 (822)
T ss_dssp EEEESSHHHHHHHHHHHHT-----TTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSC
T ss_pred EEEECCHHHHHHHHHHHHH-----CCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCC
Confidence 9999999999999999987 678899999997777777777777777 5999999999999998 777
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
+||+ |+.|.....|. ||+||+||.| ||.++.+++.++
T Consensus 551 hVIn--------te~Pes~r~y~----------qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 551 CIIG--------TERHESRRIDN----------QLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EEEE--------SSCCSSHHHHH----------HHHTTSSCSSCCCEEEEEEETTS
T ss_pred EEEe--------cCCCCCHHHHH----------HhhCccccCCCCeeEEEEechhH
Confidence 9999 88776555544 9999999999 899988887654
No 60
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.79 E-value=2.7e-19 Score=236.59 Aligned_cols=110 Identities=20% Similarity=0.249 Sum_probs=94.7
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCC--ceEEEecchhhccCCcCCeE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL--RKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~--rkVLVATnIae~GIdIP~V~ 500 (1417)
..++++||||++++.++.+++.|... .++.+..+||+|++.+|..+++.|++|+ .+|||||+++++|+|+|+++
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~----~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~ 576 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLRER----EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFAS 576 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTT----TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCC
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCc
Confidence 45789999999999999999999741 3688999999999999999999999998 99999999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CC--eEEEecCHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PG--VCYRLYSEE 554 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G--~cy~L~t~~ 554 (1417)
+||+ ||++.+.. .+.||+||+||.| .| .+|.++.+.
T Consensus 577 ~VI~--------~d~p~~~~----------~~~Q~~GR~~R~Gq~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 577 HMVM--------FDLPFNPD----------LLEQRIGRLDRIGQAHDIQIHVPYLEK 615 (968)
T ss_dssp EEEC--------SSCCSSHH----------HHHHHHHTTSCSSSCSCCEEEEEEETT
T ss_pred EEEE--------ecCCCCHH----------HHHHHhhccccCCCCceEEEEEecCCC
Confidence 9999 88876544 4559999999998 45 455555443
No 61
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.78 E-value=2.8e-18 Score=218.45 Aligned_cols=126 Identities=18% Similarity=0.223 Sum_probs=105.2
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa 490 (1417)
.++..+.+.. ..++++||||+|+..++.+++.|.+ .++.+..+||++++.+|..+++.|++|+.+|+|||+++
T Consensus 427 ~Ll~~l~~~~--~~~~~vlVf~~t~~~ae~L~~~L~~-----~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l 499 (664)
T 1c4o_A 427 DLMEGIRERA--ARGERTLVTVLTVRMAEELTSFLVE-----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL 499 (664)
T ss_dssp HHHHHHHHHH--HTTCEEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCC
T ss_pred HHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHh-----cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChh
Confidence 3444444332 2357999999999999999999987 56788999999999999999999999999999999999
Q ss_pred hccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHH
Q psy3476 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQY 556 (1417)
Q Consensus 491 e~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~ 556 (1417)
++|+|+|++++||+ ||.... ..|.|..+|.||+|||||.++|.|+.++++.+.
T Consensus 500 ~~GlDip~v~lVI~--------~d~d~~-----G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 500 REGLDIPEVSLVAI--------LDADKE-----GFLRSERSLIQTIGRAARNARGEVWLYADRVSE 552 (664)
T ss_dssp CTTCCCTTEEEEEE--------TTTTSC-----SGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCH
T ss_pred hcCccCCCCCEEEE--------eCCccc-----CCCCCHHHHHHHHCccCcCCCCEEEEEEcCCCH
Confidence 99999999999999 654221 124577788899999999999999999976443
No 62
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.77 E-value=1.2e-18 Score=214.74 Aligned_cols=111 Identities=19% Similarity=0.129 Sum_probs=91.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC-Cce-EEEecchhhccCCcCCeEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG-LRK-CIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G-~rk-VLVATnIae~GIdIP~V~~ 501 (1417)
.+.++|||+...+.++.+++.|... .++.+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+|++++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~----~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~ 415 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKE----LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANR 415 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHH----HTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSE
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHh----hCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCE
Confidence 4678999999999999999998762 156688899999999999999999988 444 7999999999999999999
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQY 556 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~ 556 (1417)
||. ||++.+...+. ||+||++|.| +..+|+++++...
T Consensus 416 vi~--------~d~~~~~~~~~----------Q~~gR~~R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 416 VIH--------FDRWWNPAVED----------QATDRVYRIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp EEE--------SSCCSCC---C----------HHHHTTTTTTTTSCEEEEEEEETTSH
T ss_pred EEE--------eCCCCCcchHH----------HHHHHHHHcCCCCeeEEEEEEeCCCH
Confidence 999 99887777766 9999999998 3456888876533
No 63
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.75 E-value=2.2e-18 Score=226.93 Aligned_cols=209 Identities=12% Similarity=0.122 Sum_probs=128.3
Q ss_pred CCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCH-------HHHHHHhccCceEEEe-------CCcc
Q psy3476 318 SSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINI-------ELFHTYFNRIAKIIKV-------PGRL 383 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~-------~~~~~~f~~~~~vi~v-------~gr~ 383 (1417)
..+.+||+|||| |+..+++.. .+....++.++++||||+.. .....+|+. ++... .|-.
T Consensus 400 ~~~~lvIiDEAH-rs~~~~~~~----~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~--~i~~Y~l~~AI~dg~l 472 (1038)
T 2w00_A 400 NQQVVFIFDECH-RSQFGEAQK----NLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGR--ELHSYVITDAIRDEKV 472 (1038)
T ss_dssp GSCEEEEEESCC-TTHHHHHHH----HHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCS--EEEEECHHHHHHHTSS
T ss_pred ccccEEEEEccc-hhcchHHHH----HHHHhCCcccEEEEeCCccccccchhhhHHHHHhCC--eeEeecHHHHHhCCCc
Confidence 356899999999 766544333 33333456899999999932 245677742 22221 2344
Q ss_pred cceeEEecccccc--------c---c--cccc-C-CCCChHHHHHHHHHhhCC----C----CCCCcEEEEeCCHHHHHH
Q psy3476 384 YPIQLEYHPIVEL--------D---R--TKSE-K-LDPGPYIRILSIIDKKYP----R----TERGDVLIFMSGISEISS 440 (1417)
Q Consensus 384 ~pv~v~~~~~~~~--------~---~--~~~~-~-~~~~~~~~il~~l~~~~~----~----~~~g~iLVFl~~~~eie~ 440 (1417)
.|+.+.|...... + . .... . ..+.....++..+.+.+. . ..++++||||+++..+..
T Consensus 473 ~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~ 552 (1038)
T 2w00_A 473 LKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKA 552 (1038)
T ss_dssp CCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHH
T ss_pred CCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHH
Confidence 5666555431100 0 0 0000 0 111112333443333221 0 124589999999999999
Q ss_pred HHHHHHhhhh-------ccCCcEE-EEecCC----------C----------CHH-------------------------
Q psy3476 441 IVRAAQEYNE-------KSQGWIV-LPLHST----------L----------SLE------------------------- 467 (1417)
Q Consensus 441 la~~L~~~~~-------~~~~~~V-~~LHs~----------L----------s~~------------------------- 467 (1417)
+++.|.+... ...+..+ ..+|++ + ++.
T Consensus 553 ~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~ 632 (1038)
T 2w00_A 553 YYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSN 632 (1038)
T ss_dssp HHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHH
T ss_pred HHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccch
Confidence 9999987542 1123444 445542 2 221
Q ss_pred ----HHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 468 ----EQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 468 ----eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
+|..+.+.|++|..+|||+|+++.+|+|+|.+. |+. +|.|.. ...+.||+||+||.+
T Consensus 633 ~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~-tly--------lDkpl~----------~~~liQaIGRtnR~~ 693 (1038)
T 2w00_A 633 GFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLN-TLF--------VDKNLR----------YHGLMQAFSRTNRIY 693 (1038)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEE-EEE--------EESCCC----------HHHHHHHHHTTCCCC
T ss_pred hhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCccccc-EEE--------EccCCC----------ccceeehhhccCcCC
Confidence 477888999999999999999999999999995 454 666654 345559999999988
Q ss_pred C-----CeEEEecC
Q psy3476 544 P-----GVCYRLYS 552 (1417)
Q Consensus 544 ~-----G~cy~L~t 552 (1417)
+ |.++.+..
T Consensus 694 ~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 694 DATKTFGNIVTFRD 707 (1038)
T ss_dssp CTTCCSEEEEESSC
T ss_pred CCCCCcEEEEEccc
Confidence 5 55665554
No 64
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=8.5e-18 Score=178.71 Aligned_cols=129 Identities=19% Similarity=0.339 Sum_probs=105.0
Q ss_pred HHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhc
Q psy3476 413 LSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492 (1417)
Q Consensus 413 l~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~ 492 (1417)
...+.+.+.....+++||||++++.++.+++.|.. .++.+..+||+|++.+|..+++.|++|..+|||||+++++
T Consensus 22 ~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~-----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 96 (175)
T 2rb4_A 22 YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQ-----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCAR 96 (175)
T ss_dssp HHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHT-----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCT
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH-----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhc
Confidence 33444444444578999999999999999999987 5688999999999999999999999999999999999999
Q ss_pred cCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 493 GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
|+|+|++++||+ ||.|.... ...+..+|.||+|||||.| +|.|+.++++.+...
T Consensus 97 Gid~~~~~~Vi~--------~d~p~~~~----~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~ 151 (175)
T 2rb4_A 97 GIDVKQVTIVVN--------FDLPVKQG----EEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPS 151 (175)
T ss_dssp TTCCTTEEEEEE--------SSCCC--C----CSCCHHHHHHHHCBC----CCEEEEEEECGGGHHH
T ss_pred CCCcccCCEEEE--------eCCCCCcc----ccCCHHHHHHHhcccccCCCCceEEEEEccchHHH
Confidence 999999999999 88773221 1257778889999999998 799999998876543
No 65
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.71 E-value=9.8e-18 Score=176.50 Aligned_cols=112 Identities=21% Similarity=0.415 Sum_probs=98.5
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
..+++||||++++.++.+++.|.. .++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi 103 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRN-----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 103 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH-----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEE
Confidence 467999999999999999999987 568899999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
+ ||.|.+...|. ||+|||||.| +|.|+.++++.+...
T Consensus 104 ~--------~~~p~~~~~~~----------qr~GR~gR~g~~g~~~~~~~~~~~~~ 141 (165)
T 1fuk_A 104 N--------YDLPANKENYI----------HRIGRGGRFGRKGVAINFVTNEDVGA 141 (165)
T ss_dssp E--------SSCCSSGGGGG----------GSSCSCC-----CEEEEEEETTTHHH
T ss_pred E--------eCCCCCHHHHH----------HHhcccccCCCCceEEEEEcchHHHH
Confidence 9 88877666665 9999999998 799999998776543
No 66
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.71 E-value=8.9e-18 Score=176.55 Aligned_cols=113 Identities=23% Similarity=0.413 Sum_probs=102.0
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
.++++||||++++.++.+++.|.. .++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~-----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi 108 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDD-----LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVI 108 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHH-----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEE
Confidence 467899999999999999999987 578899999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
+ ||.|. |..++.||+||+||.| +|.|+.++++.+...+
T Consensus 109 ~--------~~~p~----------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~ 147 (163)
T 2hjv_A 109 N--------YDLPL----------EKESYVHRTGRTGRAGNKGKAISFVTAFEKRFL 147 (163)
T ss_dssp E--------SSCCS----------SHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHH
T ss_pred E--------eCCCC----------CHHHHHHhccccCcCCCCceEEEEecHHHHHHH
Confidence 9 88765 4556669999999998 8999999988765543
No 67
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.68 E-value=6.1e-16 Score=196.69 Aligned_cols=110 Identities=16% Similarity=0.250 Sum_probs=95.0
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCc---eEEEecchhhccCCcCCeE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR---KCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~r---kVLVATnIae~GIdIP~V~ 500 (1417)
.+.++|||+.....++.+.+.|.. .++.+..+||+++.++|.++++.|++|.. .+|+||.+++.|+|+++++
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~-----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~ 489 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRN-----RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGAN 489 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHH-----HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEE
T ss_pred CCCEEEEEEccHHHHHHHHHHHHH-----CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCC
Confidence 357899999999999999998876 56789999999999999999999998864 4899999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQY 556 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~ 556 (1417)
+||. ||++-+ .+.+.|+.||++|.| +..+|++++....
T Consensus 490 ~Vi~--------~d~~wn----------p~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ti 530 (644)
T 1z3i_X 490 RLVM--------FDPDWN----------PANDEQAMARVWRDGQKKTCYIYRLLSTGTI 530 (644)
T ss_dssp EEEE--------CSCCSS----------HHHHHHHHTTSSSTTCCSCEEEEEEEETTSH
T ss_pred EEEE--------ECCCCC----------ccHHHHHHHhhhhcCCCCceEEEEEEECCCH
Confidence 9999 888754 455559999999998 4568888876543
No 68
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.67 E-value=1.2e-16 Score=203.32 Aligned_cols=127 Identities=20% Similarity=0.181 Sum_probs=105.6
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
..++..+.+.. ..++++||||+|+..++.+++.|.+ .++.+..+||++++.+|..+++.|++|+.+|+|||++
T Consensus 432 ~~Ll~~l~~~~--~~~~~vlVf~~t~~~ae~L~~~L~~-----~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~ 504 (661)
T 2d7d_A 432 DDLIGEIQARI--ERNERVLVTTLTKKMSEDLTDYLKE-----IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL 504 (661)
T ss_dssp HHHHHHHHHHH--TTTCEEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC
T ss_pred HHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHh-----cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch
Confidence 34444454443 2357999999999999999999987 5678899999999999999999999999999999999
Q ss_pred hhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHH
Q psy3476 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQY 556 (1417)
Q Consensus 490 ae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~ 556 (1417)
+++|+|+|++++||+ ||.+.. ..|.|..+|.||+|||||.++|.|+.++++.+.
T Consensus 505 l~~GlDip~v~lVi~--------~d~d~~-----G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 505 LREGLDIPEVSLVAI--------LDADKE-----GFLRSERSLIQTIGRAARNAEGRVIMYADKITK 558 (661)
T ss_dssp CSTTCCCTTEEEEEE--------TTTTCC-----TTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCH
T ss_pred hhCCcccCCCCEEEE--------eCcccc-----cCCCCHHHHHHHhCcccCCCCCEEEEEEeCCCH
Confidence 999999999999999 664221 124567778899999999999999999976543
No 69
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.66 E-value=3.7e-17 Score=173.61 Aligned_cols=108 Identities=23% Similarity=0.410 Sum_probs=98.9
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
..+++||||++++.++.+++.|.. .++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~-----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi 104 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVE-----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF 104 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh-----cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEE
Confidence 467999999999999999999987 578899999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHH
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEE 554 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~ 554 (1417)
+ ||.|.+ ..+|.||+|||||.| +|.|+.+++..
T Consensus 105 ~--------~d~p~~----------~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 105 N--------YDMPED----------SDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp E--------SSCCSS----------HHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred E--------ECCCCC----------HHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 9 887754 455669999999999 79999999854
No 70
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.66 E-value=6e-17 Score=174.12 Aligned_cols=111 Identities=20% Similarity=0.405 Sum_probs=87.2
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
.++++||||++++.++.+++.|.. .++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~-----~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI 119 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYH-----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 119 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHH-----TTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH-----cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEE
Confidence 467899999999999999999987 578899999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
+ ||+|.+ ..++.||+|||||.| +|.|+.++++.+..
T Consensus 120 ~--------~d~p~s----------~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 156 (185)
T 2jgn_A 120 N--------FDLPSD----------IEEYVHRIGRTGRVGNLGLATSFFNERNIN 156 (185)
T ss_dssp E--------SSCCSS----------HHHHHHHHTTBCCTTSCEEEEEEECGGGGG
T ss_pred E--------eCCCCC----------HHHHHHHccccCCCCCCcEEEEEEchhhHH
Confidence 9 887754 455669999999998 89999999977643
No 71
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.65 E-value=5.5e-17 Score=175.40 Aligned_cols=107 Identities=22% Similarity=0.418 Sum_probs=96.0
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEc
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVD 504 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VId 504 (1417)
++++||||++++.++.+++.|.. .++.+..+||++++++|..+++.|++|..+|||||+++++|+|+|++++||+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~-----~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~ 128 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLL-----KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN 128 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH-----HTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE
Confidence 56899999999999999999987 4678999999999999999999999999999999999999999999999999
Q ss_pred CCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHH
Q psy3476 505 SGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEE 554 (1417)
Q Consensus 505 sG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~ 554 (1417)
||+|.+. .+|.||+||+||.| +|.|+.++++.
T Consensus 129 --------~d~p~~~----------~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 129 --------YDMPEEI----------ENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp --------SSCCSSH----------HHHHHHHTTSCC---CCEEEEEECTT
T ss_pred --------eCCCCCH----------HHHHHHhCccccCCCCcEEEEEEcCc
Confidence 8887654 45559999999998 89999999864
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.4e-16 Score=201.90 Aligned_cols=111 Identities=20% Similarity=0.151 Sum_probs=96.1
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCC---ceEEEecchhhccCCcCCeE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL---RKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~---rkVLVATnIae~GIdIP~V~ 500 (1417)
.+.++|||+.....++.+.+.|.. .++.+..+||+++..+|..+++.|.++. ..+|+||.+++.|||+++++
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~-----~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~ 645 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSI-----KGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTAD 645 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHH-----HTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHh-----CCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccc
Confidence 467999999999999999999976 4688999999999999999999999854 35999999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYS 557 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~ 557 (1417)
+||. ||++-+... ..||.||++|.| +..+|+|+++...+
T Consensus 646 ~VI~--------~D~~wnp~~----------~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiE 687 (800)
T 3mwy_W 646 TVVI--------FDSDWNPQA----------DLQAMARAHRIGQKNHVMVYRLVSKDTVE 687 (800)
T ss_dssp EEEE--------SSCCSCSHH----------HHHHHTTTSCSSCCSCEEEEEEEETTSHH
T ss_pred eEEE--------ecCCCChhh----------HHHHHHHHHhcCCCceEEEEEEecCCCHH
Confidence 9998 888765544 459999999998 57789999876443
No 73
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.45 E-value=1.5e-17 Score=176.01 Aligned_cols=119 Identities=20% Similarity=0.316 Sum_probs=104.0
Q ss_pred hhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 418 KKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 418 ~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
+.+....++++||||++++.++.+++.|.. .++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|
T Consensus 23 ~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~-----~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~ 97 (170)
T 2yjt_D 23 HLLKQPEATRSIVFVRKRERVHELANWLRE-----AGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 97 (170)
Confidence 333334567899999999999999999977 467899999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 498 ~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
++++||+ ||.|.+...|. ||+||+||.| +|.|+.+++..+...+
T Consensus 98 ~~~~Vi~--------~~~p~~~~~~~----------qr~GR~~R~g~~g~~~~~~~~~~~~~~ 142 (170)
T 2yjt_D 98 DVSHVFN--------FDMPRSGDTYL----------HRIGRTARAGRKGTAISLVEAHDHLLL 142 (170)
Confidence 9999999 88776555555 9999999998 8999999988765543
No 74
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.63 E-value=3.2e-15 Score=168.01 Aligned_cols=111 Identities=17% Similarity=0.114 Sum_probs=79.5
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----CCCcEEEecchHHHHHHHHHHHHHH
Q psy3476 29 MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 29 ~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----~~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.+..+...-...+.+|.++++.+.++++++++||||||||+++..++++. ...+++|+.|+|.++.++++++..-
T Consensus 55 ~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 55 CEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 34444445557789999999999999999999999999999877776653 2347999999999999999877543
Q ss_pred HccccCCeEEEEEeeccc------ccCCccEEEEccchhHHhh
Q psy3476 104 TLSQYSNLVGYQIRFEKH------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 104 ~~~~~g~~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l 140 (1417)
....|..++........ ....+.|+++|+|.|++.+
T Consensus 135 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l 176 (249)
T 3ber_A 135 -GSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHL 176 (249)
T ss_dssp -HGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHH
T ss_pred -hccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHH
Confidence 33445555543332111 1245678888888777654
No 75
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.60 E-value=1.2e-14 Score=159.53 Aligned_cols=104 Identities=16% Similarity=0.100 Sum_probs=72.6
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----CCCcEEEecchHHHHHHHHHHHHHHHccccCC
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLSKRVAYETLSQYSN 110 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~ 110 (1417)
.--..+.+|.++++.+.+++++++++|||||||.++..++++. ...++++..|+|.++.++++++..- ....+.
T Consensus 33 g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~ 111 (224)
T 1qde_A 33 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL-AFHMDI 111 (224)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH-TTTSCC
T ss_pred CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHH-hcccCc
Confidence 3345689999999999999999999999999999877666653 2358999999999999998877543 333344
Q ss_pred eEEEEEeeccc-----ccCCccEEEEccchhHHhh
Q psy3476 111 LVGYQIRFEKH-----RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 111 ~vGy~ir~e~~-----~~~~t~I~~~T~g~llr~l 140 (1417)
.++........ .-...+|+++|++.+++.+
T Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~ 146 (224)
T 1qde_A 112 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNI 146 (224)
T ss_dssp CEEEECC----------CTTCSEEEECHHHHHHHH
T ss_pred eEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHH
Confidence 44432221111 1123678888888777654
No 76
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.60 E-value=1e-14 Score=161.70 Aligned_cols=110 Identities=19% Similarity=0.138 Sum_probs=76.2
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---------CCCcEEEecchHHHHHHHHHHH
Q psy3476 30 KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---------GFQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 30 ~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---------~~~~i~~tqPrr~aa~~~a~rv 100 (1417)
+..+.+.--..+.+|.+++..+.+++++++++|||||||+++..++++. ...+++++.|+|.++.++++++
T Consensus 38 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 117 (236)
T 2pl3_A 38 KGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVL 117 (236)
T ss_dssp HHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHH
Confidence 3334445556789999999999999999999999999999866655542 2357999999999999998876
Q ss_pred HHHHccccCCeEEEEEeeccc-----ccCCccEEEEccchhHHhh
Q psy3476 101 AYETLSQYSNLVGYQIRFEKH-----RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 101 a~e~~~~~g~~vGy~ir~e~~-----~~~~t~I~~~T~g~llr~l 140 (1417)
.. ++...+..++........ ......|+++|+|.+++.+
T Consensus 118 ~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l 161 (236)
T 2pl3_A 118 RK-VGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHM 161 (236)
T ss_dssp HH-HTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred HH-HhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 54 333444455443322111 1134678888887776543
No 77
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.59 E-value=9e-15 Score=163.15 Aligned_cols=101 Identities=12% Similarity=-0.034 Sum_probs=68.5
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc----------CCCcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA----------GFQRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~----------~~~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
..+.+|.++++.+.++++++++||||||||..+..+++.. ...++++..|+|.++.|+++.+..- ....
T Consensus 51 ~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~-~~~~ 129 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY-CRAC 129 (242)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH-HHHT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH-Hhhc
Confidence 3679999999999999999999999999998866555542 2356899999999999998766443 3333
Q ss_pred CCeEEEEEeeccc------ccCCccEEEEccchhHHhh
Q psy3476 109 SNLVGYQIRFEKH------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 109 g~~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l 140 (1417)
|..++........ .....+|+++|+|.|++.+
T Consensus 130 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l 167 (242)
T 3fe2_A 130 RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 167 (242)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHH
Confidence 4444432221111 1123466777776666543
No 78
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=159.11 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=67.9
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----------CCCcEEEecchHHHHHHHHHHHHHHHccc
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----------GFQRIACTQPRRIACISLSKRVAYETLSQ 107 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----------~~~~i~~tqPrr~aa~~~a~rva~e~~~~ 107 (1417)
..+.+|.++++.+.++++++++||||||||..+..+++.. ...++++..|+|.++.|+++++.... .
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~--~ 119 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS--Y 119 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHC--C
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc--c
Confidence 4578899999999999999999999999998765555431 33578999999999999988876643 1
Q ss_pred cCCeEEEEEeeccc------ccCCccEEEEccchhHHhh
Q psy3476 108 YSNLVGYQIRFEKH------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 108 ~g~~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l 140 (1417)
.+..++........ ......|+++|+|.+++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~ 158 (228)
T 3iuy_A 120 KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQ 158 (228)
T ss_dssp TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHH
T ss_pred cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHH
Confidence 22233322211111 1233567777777766543
No 79
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.58 E-value=1.7e-14 Score=156.01 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=57.8
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--------CCCcEEEecchHHHHHHHHHHHHHHH
Q psy3476 35 QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--------GFQRIACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 35 r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--------~~~~i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
..--..+.+|.++++.+.+++++++++|||||||.++..++++. ...+++++.|+|..+.++++++....
T Consensus 19 ~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 96 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA 96 (207)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHh
Confidence 33345678999999999999999999999999999877777654 23579999999999999988776653
No 80
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.58 E-value=1.7e-14 Score=160.57 Aligned_cols=101 Identities=18% Similarity=0.111 Sum_probs=71.8
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----CCCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
..+.+|.++++.+.++++++++||||||||.++..++++. ...++++..|+|.++.++++++.. ++...+..++
T Consensus 52 ~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 130 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILA-LGDYMGATCH 130 (237)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHH-HhhhcCceEE
Confidence 3678999999999999999999999999999888777764 235899999999999999887754 3333344443
Q ss_pred EEEeeccc-------ccCCccEEEEccchhHHhh
Q psy3476 114 YQIRFEKH-------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 114 y~ir~e~~-------~~~~t~I~~~T~g~llr~l 140 (1417)
..+..... ......|+++|+|.|++.+
T Consensus 131 ~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l 164 (237)
T 3bor_A 131 ACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDML 164 (237)
T ss_dssp EECC-------------CCCSEEEECHHHHHHHH
T ss_pred EEECCCchHHHHHHHhcCCCCEEEECHHHHHHHH
Confidence 32222111 1122578888887777654
No 81
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.57 E-value=2.3e-14 Score=157.23 Aligned_cols=105 Identities=15% Similarity=0.059 Sum_probs=72.7
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHcccc-
Q psy3476 35 QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQY- 108 (1417)
Q Consensus 35 r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~- 108 (1417)
..--..+.+|.++++.+.+++++++++|||||||.++..++++.. ..++++..|+|.++.|+++++.+-.. ..
T Consensus 22 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~ 100 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITK-FCP 100 (219)
T ss_dssp TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHT-TSC
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhh-hcc
Confidence 344456889999999999999999999999999998777776642 35799999999999999887755432 22
Q ss_pred ---CCeEEEEEeeccc------ccCCccEEEEccchhHHhh
Q psy3476 109 ---SNLVGYQIRFEKH------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 109 ---g~~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l 140 (1417)
+..++........ ......|+++|+|.+.+.+
T Consensus 101 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l 141 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFI 141 (219)
T ss_dssp GGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHH
T ss_pred cccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHH
Confidence 2333332222111 1124567777777766544
No 82
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.56 E-value=5.5e-14 Score=152.14 Aligned_cols=102 Identities=17% Similarity=0.095 Sum_probs=70.6
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
..+.+|.++++.+.+++++++++|||||||..+..++++.. ..++++..|+|..+.++++++..-.....+..++
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 104 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVM 104 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 46789999999999999999999999999988777776542 2479999999999999988775543221134444
Q ss_pred EEEeeccc------ccCCccEEEEccchhHHhh
Q psy3476 114 YQIRFEKH------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 114 y~ir~e~~------~~~~t~I~~~T~g~llr~l 140 (1417)
........ .....+|+++|++.+.+.+
T Consensus 105 ~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~ 137 (206)
T 1vec_A 105 ATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI 137 (206)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHH
T ss_pred EEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHH
Confidence 33221111 1234567777776665543
No 83
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.56 E-value=3.9e-14 Score=163.64 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=76.8
Q ss_pred cCCCcHHHHHHHHHHHhcC--CeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 36 NSLPVAQYKQEIIDTVLKE--RVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~--~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
.--..+.+|.+++..+..+ ++++++||||||||..+..++++.. ..+++|..|+|.+|.|+++.+..-.....
T Consensus 111 g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 111 GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 3344567899999999987 8999999999999998777777543 23799999999999999887654332222
Q ss_pred CCeEEEEEeeccc---ccCCccEEEEccchhHHhhc
Q psy3476 109 SNLVGYQIRFEKH---RREKTKIVFITEGLLLRQDS 141 (1417)
Q Consensus 109 g~~vGy~ir~e~~---~~~~t~I~~~T~g~llr~l~ 141 (1417)
+..+++.++.... .....+|+++|+|.|++.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~ 226 (300)
T 3fmo_B 191 ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCS 226 (300)
T ss_dssp TCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHT
T ss_pred CcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHH
Confidence 4455555443322 22346799999999887764
No 84
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.54 E-value=5.1e-14 Score=155.86 Aligned_cols=102 Identities=13% Similarity=0.046 Sum_probs=70.9
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
..+.+|.++++.+.+++++++++|||||||.++..++++.. ..++++..|+|..+.|+++++........+..++
T Consensus 46 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 125 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECH 125 (230)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEE
Confidence 36899999999999999999999999999998766665532 3589999999999999988776543221244444
Q ss_pred EEEeeccc-----ccCCccEEEEccchhHHhh
Q psy3476 114 YQIRFEKH-----RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 114 y~ir~e~~-----~~~~t~I~~~T~g~llr~l 140 (1417)
........ ......|+++|+|.+++.+
T Consensus 126 ~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~ 157 (230)
T 2oxc_A 126 VFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLI 157 (230)
T ss_dssp EECTTSCHHHHHHHTTSCSEEEECHHHHHHHH
T ss_pred EEeCCCCHHHHHHhccCCCEEEECHHHHHHHH
Confidence 32221110 1124567777777666543
No 85
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.53 E-value=9.7e-14 Score=154.72 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=71.7
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc------CCCcEEEecchHHHHHHHHHHHHHHHccccCCe
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA------GFQRIACTQPRRIACISLSKRVAYETLSQYSNL 111 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~------~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~ 111 (1417)
-..+.+|.++++.+.++++++++||||||||..+..++++. ...++++..|+|.++.|+++++.+- ....|..
T Consensus 50 ~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~ 128 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI-SEGTGFR 128 (245)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH-TTTSCCC
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH-hcccCce
Confidence 34688999999999999999999999999999866666542 2247999999999999998876543 3333433
Q ss_pred EEEEEe-------ecccccCCccEEEEccchhHHhhc
Q psy3476 112 VGYQIR-------FEKHRREKTKIVFITEGLLLRQDS 141 (1417)
Q Consensus 112 vGy~ir-------~e~~~~~~t~I~~~T~g~llr~l~ 141 (1417)
++.... ..........|+++|+|.+...+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 165 (245)
T 3dkp_A 129 IHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLK 165 (245)
T ss_dssp EECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHH
T ss_pred EEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHH
Confidence 332111 111123345778888877776553
No 86
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.53 E-value=3.3e-14 Score=160.86 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=72.2
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---------CCCcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---------GFQRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---------~~~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
-..+.+|.+++..+..+++++++||||||||..+..++++. ...++++..|+|.+|.++++++.+. ....
T Consensus 75 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~-~~~~ 153 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKEL-MTHH 153 (262)
T ss_dssp CBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH-TTTC
T ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHH-Hhhc
Confidence 33678999999999999999999999999998766555531 2357999999999999998877553 3445
Q ss_pred CCeEEEEEeecccc------cCCccEEEEccchhHHhh
Q psy3476 109 SNLVGYQIRFEKHR------REKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 109 g~~vGy~ir~e~~~------~~~t~I~~~T~g~llr~l 140 (1417)
+..++..+...... ....+|+++|+|.+++.+
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~ 191 (262)
T 3ly5_A 154 VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHM 191 (262)
T ss_dssp CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHH
Confidence 55555443322211 123567777777776544
No 87
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.52 E-value=1.6e-13 Score=150.39 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----CCCcEEEecchHHHHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----~~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.+.+|.++++.+.+++++++++|||||||..+..++++. +..+++++.|+|..+.|+++++.+-
T Consensus 37 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 37 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999887777764 2248999999999999998877554
No 88
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.47 E-value=3.8e-13 Score=150.74 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=68.8
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--------------CCCcEEEecchHHHHHHHHHHHHHHH
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--------------GFQRIACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--------------~~~~i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
..+.+|.++++.+.+++++++++|||||||..+..++++. ...++++..|+|.++.++++++....
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999998766555532 12479999999999999988765532
Q ss_pred ccccCCeEEEEEeeccc------ccCCccEEEEccchhHHhh
Q psy3476 105 LSQYSNLVGYQIRFEKH------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 105 ~~~~g~~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l 140 (1417)
...+..++........ ......|+++|+|.|++.+
T Consensus 125 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 125 -LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp -TTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred -ccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 2233333322211111 1234567777777666543
No 89
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.47 E-value=8.6e-13 Score=166.53 Aligned_cols=99 Identities=9% Similarity=-0.030 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH--cCCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ--AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQI 116 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile--~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~i 116 (1417)
--+..|...+..+.+++ |..+.||||||..+..+++- .....+.|..|+|.+|.+.++.+.. +...+|-+||..+
T Consensus 79 ~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~-l~~~lGLsv~~i~ 155 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGP-VYRGLGLSVGVIQ 155 (997)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHH-HHHTTTCCEEECC
T ss_pred CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHH-HHHhcCCeEEEEe
Confidence 33788888888888888 89999999999876555532 2224677788999999998876544 3456788888755
Q ss_pred eecc----cccCCccEEEEccchh-HHhh
Q psy3476 117 RFEK----HRREKTKIVFITEGLL-LRQD 140 (1417)
Q Consensus 117 r~e~----~~~~~t~I~~~T~g~l-lr~l 140 (1417)
...+ +....+.|+|+|+|.| ++.+
T Consensus 156 Gg~~~~~r~~ay~~DIvyGTpgrlgfDyL 184 (997)
T 2ipc_A 156 HASTPAERRKAYLADVTYVTNSELGFDYL 184 (997)
T ss_dssp TTCCHHHHHHHHTSSEEEEEHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCCEEEECchhhhhHHH
Confidence 4322 1123578999999998 5554
No 90
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.35 E-value=1.8e-12 Score=140.57 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=71.6
Q ss_pred HhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--------CCCcEEEecchHHHHHH-HHHHHHHHH
Q psy3476 34 TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--------GFQRIACTQPRRIACIS-LSKRVAYET 104 (1417)
Q Consensus 34 ~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--------~~~~i~~tqPrr~aa~~-~a~rva~e~ 104 (1417)
.....+.+.+|.++++.+.+++.++|.+|||||||+++..++.+. ...+++++.|++..+.+ +.+.+. .+
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~-~~ 106 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ-PF 106 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH-HH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH-HH
Confidence 345678899999999999999999999999999999877666542 13588999999998888 444443 33
Q ss_pred ccccCCeEEEEEeecc------cccCCccEEEEccchhHHhhc
Q psy3476 105 LSQYSNLVGYQIRFEK------HRREKTKIVFITEGLLLRQDS 141 (1417)
Q Consensus 105 ~~~~g~~vGy~ir~e~------~~~~~t~I~~~T~g~llr~l~ 141 (1417)
... +..|+....... .......|+++|++.|.+.+.
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~ 148 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLL 148 (216)
T ss_dssp HTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHH
T ss_pred hcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHh
Confidence 221 223332111110 011236788888888877654
No 91
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.21 E-value=7.9e-13 Score=170.18 Aligned_cols=147 Identities=15% Similarity=0.095 Sum_probs=116.5
Q ss_pred hhhhhHHHhhhccccccC---CCcccccccHHH-Hhhhhc---CCccchhhcchHH------HHHHHHHhcCC----Ccc
Q psy3476 794 IEEEEEEEEGERLESRTG---PGVCYRLYSEEQ-YSLLAE---YSTPEIRRVSIDS------LLLSLVCMGLG----DVR 856 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~---pG~CyRLyt~~~-~~~l~~---~~~PEI~r~~L~~------~vL~lk~~g~~----~~~ 856 (1417)
..|.+...||.|||||.+ +|.||++|++.. +..+.+ ...||+.+++|.. .+|.++++|.- ++.
T Consensus 377 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~ 456 (715)
T 2va8_A 377 EIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLE 456 (715)
T ss_dssp --CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHH
T ss_pred cCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHH
Confidence 477999999999999999 999999998876 433322 5689999998876 68888888832 232
Q ss_pred cC---CCCC-CCCccchHHHHHHHhhccccccc---cccchhhhhcccCCCCccccchhhhcccc---cchhhHHHHHHh
Q psy3476 857 KF---PFLE-APPAENIESSVRSLTQHGAIDSK---ERVTTLGRFLSDLPVDIPLGKMLVFGSMF---HQIDTMLLLDLA 926 (1417)
Q Consensus 857 ~f---~~l~-~P~~~~l~~A~~~L~~lgald~~---~~lT~lG~~l~~lPvdp~lak~Ll~~~~~---~cl~~~l~i~a~ 926 (1417)
.| .|+. +|+...+..|++.|..+|+|+.+ ..+|++|+.|+.+|++|+.|+|++.+... .|..+++.|+|+
T Consensus 457 ~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 536 (715)
T 2va8_A 457 NFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAF 536 (715)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred HHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhc
Confidence 22 3443 55566799999999999999876 48999999999999999999999999887 799999998887
Q ss_pred hc-cccccchhhhcc
Q psy3476 927 LN-FGAIDSKERVTS 940 (1417)
Q Consensus 927 ls-~~~~~~~~~~~~ 940 (1417)
.+ +++++.++.+..
T Consensus 537 ~~e~~~~~~r~~e~~ 551 (715)
T 2va8_A 537 TPDGPLVSVGRNEEE 551 (715)
T ss_dssp STTSCCCCCCHHHHH
T ss_pred CcccccCccChHHHH
Confidence 77 566665555443
No 92
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.19 E-value=3.6e-11 Score=137.19 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=54.3
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH---cCCCcEEEecchHHHHHHHHHHHHHH
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ---AGFQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile---~~~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
+..+.+|.++++.+.+++..+|++|||||||.++...+.. .+..+++++.|++..+.+..+++.+.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 5778999999998888888899999999999987655543 34458999999999988888887654
No 93
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.17 E-value=5e-12 Score=162.40 Aligned_cols=145 Identities=19% Similarity=0.196 Sum_probs=118.4
Q ss_pred hhhhhHHHhhhccccccC---CCcccccccHHHHhhhhc---CCccchhhcchHH------HHHHHHHhcC-CCcc---c
Q psy3476 794 IEEEEEEEEGERLESRTG---PGVCYRLYSEEQYSLLAE---YSTPEIRRVSIDS------LLLSLVCMGL-GDVR---K 857 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~---pG~CyRLyt~~~~~~l~~---~~~PEI~r~~L~~------~vL~lk~~g~-~~~~---~ 857 (1417)
..|.+...||.|||||.+ +|.||++|++..++.+.+ ...||+.+++|.. .+|.++++|. .+.. .
T Consensus 357 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~ 436 (702)
T 2p6r_A 357 RIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELED 436 (702)
T ss_dssp ECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHH
T ss_pred cCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHH
Confidence 467899999999999999 999999999988765443 5789999998876 6778888883 2222 1
Q ss_pred C---CCC----CCCCccchHHHHHHHhhccccccc--cccchhhhhcccCCCCccccchhhhcccc--cchhhHHHHHHh
Q psy3476 858 F---PFL----EAPPAENIESSVRSLTQHGAIDSK--ERVTTLGRFLSDLPVDIPLGKMLVFGSMF--HQIDTMLLLDLA 926 (1417)
Q Consensus 858 f---~~l----~~P~~~~l~~A~~~L~~lgald~~--~~lT~lG~~l~~lPvdp~lak~Ll~~~~~--~cl~~~l~i~a~ 926 (1417)
| .|+ ++|+.+.+..|++.|..+|+|+.+ +.+|++|+.|+.+|++|+.++|++.+... .|..+++.++|+
T Consensus 437 ~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 516 (702)
T 2p6r_A 437 FFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICR 516 (702)
T ss_dssp HHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred HHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhC
Confidence 1 222 378889999999999999999977 88999999999999999999999999888 899999999887
Q ss_pred hc-cccccchhhh
Q psy3476 927 LN-FGAIDSKERV 938 (1417)
Q Consensus 927 ls-~~~~~~~~~~ 938 (1417)
.+ +.++..++.+
T Consensus 517 ~~e~~~i~~r~~e 529 (702)
T 2p6r_A 517 TPDMERLTVRKTD 529 (702)
T ss_dssp STTSCCCCCCTTT
T ss_pred CcccccCCCCCch
Confidence 77 3445444433
No 94
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.14 E-value=3.4e-11 Score=137.07 Aligned_cols=122 Identities=20% Similarity=0.169 Sum_probs=90.2
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC-Cce-EEEecc
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG-LRK-CIVSTN 488 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G-~rk-VLVATn 488 (1417)
.+.+.+.+.. ..+.++|||+.....++.+.+.|... .++.+..+||+++.++|..+++.|++| ..+ +|+||+
T Consensus 100 ~L~~ll~~~~--~~~~kvlIFs~~~~~~~~l~~~L~~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 100 RTMEIIEEAL--DEGDKIAIFTQFVDMGKIIRNIIEKE----LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp HHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHHH----HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHHHH--hCCCeEEEEeccHHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 3444444432 23679999999999999999998762 156788899999999999999999988 566 789999
Q ss_pred hhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHH
Q psy3476 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQY 556 (1417)
Q Consensus 489 Iae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~ 556 (1417)
++++|+|++++++||+ ||++.+...+. ||.||++|.| +-.+|+++++...
T Consensus 174 ~~g~Glnl~~a~~VI~--------~d~~wnp~~~~----------Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 174 AGGFGINLTSANRVIH--------FDRWWNPAVED----------QATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp TTCCCCCCTTCSEEEE--------CSCCSCTTTC------------------------CCEEEEEEETTSH
T ss_pred hhcCCcCcccCCEEEE--------ECCCCChhHHH----------HHHHhccccCCCCceEEEEEeeCCCH
Confidence 9999999999999999 99988877777 9999999998 4567888876543
No 95
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.12 E-value=4.2e-10 Score=140.23 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=70.1
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEE--ecc
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV--STN 488 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLV--ATn 488 (1417)
.+.+.+.+.+. ..+|.+|||+||....+.+++.+.. ..+ ..++.. .++..+++.|++|. .|++ +|.
T Consensus 371 ~~~~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~-------~~~-~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~ 438 (540)
T 2vl7_A 371 IYSILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG-------IPV-IEENKK--TRHEEVLELMKTGK-YLVMLVMRA 438 (540)
T ss_dssp HHHHHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT-------SCE-EESTTT--CCHHHHHHHHHTSC-CEEEEEC--
T ss_pred HHHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc-------Cce-EecCCC--CcHHHHHHHHhcCC-eEEEEEecC
Confidence 34444444443 3467899999999999999877643 222 335443 35777888887764 5666 899
Q ss_pred hhhccCCcCC----eEEEEcCCcccceecccCC-------------CccccceeecCHhhHHhhcCcCCCCC--CCeEEE
Q psy3476 489 IAETSITIDG----IRFVVDSGKVKEMSYDVTA-------------KMSTLQEFWISKASAEQRKGRAGRTG--PGVCYR 549 (1417)
Q Consensus 489 Iae~GIdIP~----V~~VIdsG~~k~~~yD~~~-------------~~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy~ 549 (1417)
.+..|||+|+ +++||..|+.....-|+.. +...|. .+.......|-+||+-|.. .|..+.
T Consensus 439 ~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 439 KESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp -------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred ceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 9999999998 8999987775322211100 000011 1122456789999999986 477664
Q ss_pred e
Q psy3476 550 L 550 (1417)
Q Consensus 550 L 550 (1417)
+
T Consensus 518 l 518 (540)
T 2vl7_A 518 C 518 (540)
T ss_dssp E
T ss_pred E
Confidence 4
No 96
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.02 E-value=2.1e-09 Score=119.86 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=68.5
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHHHHHHccccCCe-EEE
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNL-VGY 114 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~-vGy 114 (1417)
.....+.+|.++++.+.+++.++|+||||+|||.++..++... ..++++..|++..+.+..+++.+ +|.. ++.
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~-----~~~~~v~~ 163 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGI-----FGEEYVGE 163 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGG-----GCGGGEEE
T ss_pred CCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh-----CCCCeEEE
Confidence 3456789999999999999899999999999999988777765 45778888998777776665544 3444 553
Q ss_pred EEeecccccCCccEEEEccchhHH
Q psy3476 115 QIRFEKHRREKTKIVFITEGLLLR 138 (1417)
Q Consensus 115 ~ir~e~~~~~~t~I~~~T~g~llr 138 (1417)
... .......|+++|.+.+.+
T Consensus 164 ~~g---~~~~~~~i~v~T~~~l~~ 184 (237)
T 2fz4_A 164 FSG---RIKELKPLTVSTYDSAYV 184 (237)
T ss_dssp ESS---SCBCCCSEEEEEHHHHHH
T ss_pred EeC---CCCCcCCEEEEeHHHHHh
Confidence 222 223456788888776554
No 97
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.85 E-value=2.4e-10 Score=147.17 Aligned_cols=146 Identities=15% Similarity=0.001 Sum_probs=111.0
Q ss_pred hhhhhHHHhhhccccccC---CCcccccccHHHHh----hhhcCCccchhhc-----chHHHHHHHHHhcCC----Ccc-
Q psy3476 794 IEEEEEEEEGERLESRTG---PGVCYRLYSEEQYS----LLAEYSTPEIRRV-----SIDSLLLSLVCMGLG----DVR- 856 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~---pG~CyRLyt~~~~~----~l~~~~~PEI~r~-----~L~~~vL~lk~~g~~----~~~- 856 (1417)
..|.+...||.|||||.+ +|.||++|++..++ .+....+++|... .|...++.+++.|.. ++.
T Consensus 356 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~ 435 (720)
T 2zj8_A 356 RIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILK 435 (720)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHH
T ss_pred cCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHH
Confidence 477899999999999998 89999999987643 3444555555433 456667777777632 122
Q ss_pred --cCCCC------CCCCccchHHHHHHHhhccccc-ccc---ccchhhhhcccCCCCccccchhhhcccc----cchhhH
Q psy3476 857 --KFPFL------EAPPAENIESSVRSLTQHGAID-SKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMF----HQIDTM 920 (1417)
Q Consensus 857 --~f~~l------~~P~~~~l~~A~~~L~~lgald-~~~---~lT~lG~~l~~lPvdp~lak~Ll~~~~~----~cl~~~ 920 (1417)
.+.|+ ++|..+.+..|++.|...|+|+ .++ .+|++|+.|+.+|++|..+++++.+... .|..++
T Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (720)
T 2zj8_A 436 FISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGI 515 (720)
T ss_dssp HHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHH
Confidence 22443 2233467999999999999998 655 7999999999999999999999998887 899999
Q ss_pred HHHHHhhc-cccccchhhhc
Q psy3476 921 LLLDLALN-FGAIDSKERVT 939 (1417)
Q Consensus 921 l~i~a~ls-~~~~~~~~~~~ 939 (1417)
+.|+|+++ +++++.++.+.
T Consensus 516 l~i~~~~~e~~~i~~r~~e~ 535 (720)
T 2zj8_A 516 FHLISLTPDITPFNYSKREF 535 (720)
T ss_dssp HHHHHTSTTCCCCCCCHHHH
T ss_pred HHHhccCccccccccCHHHH
Confidence 99999988 46665554443
No 98
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.81 E-value=5.2e-08 Score=121.72 Aligned_cols=127 Identities=17% Similarity=0.079 Sum_probs=77.5
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEec--
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST-- 487 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVAT-- 487 (1417)
..+.+.|.+... ..+|.+|||+|+....+.+++. .+..++.=..+++..+..+.++ .++ .-|++||
T Consensus 379 ~~l~~~i~~l~~-~~~g~~lvlF~Sy~~l~~v~~~--------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~g 446 (551)
T 3crv_A 379 KRYADYLLKIYF-QAKANVLVVFPSYEIMDRVMSR--------ISLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGK 446 (551)
T ss_dssp HHHHHHHHHHHH-HCSSEEEEEESCHHHHHHHHTT--------CCSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESS
T ss_pred HHHHHHHHHHHH-hCCCCEEEEecCHHHHHHHHHh--------cCCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEec
Confidence 445555554432 3467899999999999888762 2334444444566555544443 233 4799998
Q ss_pred chhhccCCcC---C--eEEEEcCCcccceecccC-----------CCcccc---ceeecCHhhHHhhcCcCCCCC--CCe
Q psy3476 488 NIAETSITID---G--IRFVVDSGKVKEMSYDVT-----------AKMSTL---QEFWISKASAEQRKGRAGRTG--PGV 546 (1417)
Q Consensus 488 nIae~GIdIP---~--V~~VIdsG~~k~~~yD~~-----------~~~~~l---~~~~ISkasa~QR~GRAGR~g--~G~ 546 (1417)
.....|||+| + .+.||-.|+.-... |+. .+.+.+ ...| ......|-+||+=|.. .|.
T Consensus 447 g~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~ 524 (551)
T 3crv_A 447 GKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCN 524 (551)
T ss_dssp CCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEE
T ss_pred ceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEE
Confidence 6899999999 3 67777667643322 221 111111 1223 4456779999999987 366
Q ss_pred EEEe
Q psy3476 547 CYRL 550 (1417)
Q Consensus 547 cy~L 550 (1417)
.+.+
T Consensus 525 v~ll 528 (551)
T 3crv_A 525 VWLL 528 (551)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6644
No 99
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.85 E-value=7.9e-07 Score=98.54 Aligned_cols=77 Identities=30% Similarity=0.425 Sum_probs=67.4
Q ss_pred HHhcCChhhHHhhcccccccchHHHHHHHhhhccccchhHHHHHHhhccchhhhHhhhhccccccchhhhcccccccc
Q psy3476 1105 FRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDL 1182 (1417)
Q Consensus 1105 ~~~~~~g~~l~~~~~~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~~~lk~ilmsat~~~~~f~~yf~~~~~~~ 1182 (1417)
+-++|.|.+++.... .++++.++||||+|+|.++.|+++..++..+...++.++++||||++.+.|..||+++|+..
T Consensus 158 Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~~pvi~ 234 (235)
T 3llm_A 158 IMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIE 234 (235)
T ss_dssp EEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTSCCCEE
T ss_pred EEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCCCCEEe
Confidence 446677777764333 58999999999999999999999999999999889999999999999999999999998864
No 100
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.80 E-value=2.1e-06 Score=93.83 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=70.4
Q ss_pred hhhhHHHhhhccccccC-CCcccccccHHH--------------HhhhhcCCccchhhcchHHHHHHHHHhcCCCcccC-
Q psy3476 795 EEEEEEEEGERLESRTG-PGVCYRLYSEEQ--------------YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF- 858 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~-pG~CyRLyt~~~--------------~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f- 858 (1417)
.|.+...||.||+||.+ +|.||.+|+..+ +..+...+.|||.+.++..+++.++.++.++...|
T Consensus 110 ~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~ 189 (212)
T 3eaq_A 110 DRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQ 189 (212)
T ss_dssp SSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTH
T ss_pred cCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 46788899999999996 999999999877 44566778899999999999999999998777667
Q ss_pred ----CCCCCCCccchHHHHHHH
Q psy3476 859 ----PFLEAPPAENIESSVRSL 876 (1417)
Q Consensus 859 ----~~l~~P~~~~l~~A~~~L 876 (1417)
+|+++|+.+++.+|+..|
T Consensus 190 ~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 190 DFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHhh
Confidence 788999999999998765
No 101
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=97.69 E-value=3e-06 Score=97.72 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=72.5
Q ss_pred hhhhHHHhhhccccccC-CCcccccccHHH--------------HhhhhcCCccchhhcchHHHHHHHHHhcCCCcccC-
Q psy3476 795 EEEEEEEEGERLESRTG-PGVCYRLYSEEQ--------------YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF- 858 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~-pG~CyRLyt~~~--------------~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f- 858 (1417)
.+.+...||.||+||.+ +|.||.+|+..+ +..+...+.|||.+.++..+++.++.++.++...|
T Consensus 107 ~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~ 186 (300)
T 3i32_A 107 DRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQ 186 (300)
T ss_dssp SSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred CCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 45778899999999996 999999999877 45567778899999999999999999888777777
Q ss_pred ----CCCCCCCccchHHHHHHHhhccc
Q psy3476 859 ----PFLEAPPAENIESSVRSLTQHGA 881 (1417)
Q Consensus 859 ----~~l~~P~~~~l~~A~~~L~~lga 881 (1417)
+|+++|+.+.+.+|+..|.....
T Consensus 187 ~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 187 DFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 68899999999999999976655
No 102
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.30 E-value=0.00058 Score=86.16 Aligned_cols=62 Identities=23% Similarity=0.390 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHH--HH----cCCCcEEEecchHHHHHHHHHHHHH
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL--VQ----AGFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~i--le----~~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
...|++++..+..+++++|+|++||||||.+-..+ +. ....+|+++.|++.||.++.+.+..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 35688888888899999999999999998654332 22 1234899999999999888776543
No 103
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.79 E-value=0.00034 Score=89.07 Aligned_cols=81 Identities=9% Similarity=0.117 Sum_probs=69.4
Q ss_pred hhhhHHHhhhccccccC----CCcccccccHH--HHhhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccc
Q psy3476 795 EEEEEEEEGERLESRTG----PGVCYRLYSEE--QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~----pG~CyRLyt~~--~~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~ 868 (1417)
+|.++..||+|||||.+ +|.||++|+++ .+..+.....|||.+++|....++++.|+.. ++...
T Consensus 414 ~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l~~~~~~----------l~~~~ 483 (677)
T 3rc3_A 414 ITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYH----------LPDAT 483 (677)
T ss_dssp CCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHHHHHHHH----------STTSC
T ss_pred CCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHHHHHHHhcc----------CCcch
Confidence 67899999999999999 69999999988 6678999999999999999999999999842 34456
Q ss_pred hHHHHHHHhhccccccc
Q psy3476 869 IESSVRSLTQHGAIDSK 885 (1417)
Q Consensus 869 l~~A~~~L~~lgald~~ 885 (1417)
+.+.++.+..++.+|..
T Consensus 484 l~ell~~l~~~~~vd~~ 500 (677)
T 3rc3_A 484 LSNLIDIFVDFSQVDGQ 500 (677)
T ss_dssp HHHHHHHHHHHCBCCTT
T ss_pred HHHHHHHHHHhhcccch
Confidence 78888888888877743
No 104
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.54 E-value=0.0063 Score=74.05 Aligned_cols=61 Identities=25% Similarity=0.328 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHh----cC-CeEEEEcCCCcchhHHHH---HHHHHcCCCcEEEecchHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVL----KE-RVVIIAGDTGCGKSTQIP---QYLVQAGFQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 40 ~~~~q~~il~~i~----~~-~~~iI~a~TGsGKTt~ip---q~ile~~~~~i~~tqPrr~aa~~~a~rv 100 (1417)
+...|++++..+. ++ .+++|.|+.|||||+.+- .++...+..+|+++.|+..||..+.+++
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 3456777777553 23 499999999999998654 3445556568999999988877776654
No 105
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.53 E-value=0.0061 Score=76.28 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHH--HcCCCcEEEecchHHHHHHHHHH
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV--QAGFQRIACTQPRRIACISLSKR 99 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~il--e~~~~~i~~tqPrr~aa~~~a~r 99 (1417)
..+...|.+++..+..+++++|.|+.||||||.+-..+. .....+|+++.|+..||..+.+.
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhh
Confidence 345789999999999999999999999999987544332 22335788888888777666543
No 106
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.16 E-value=0.0024 Score=80.64 Aligned_cols=185 Identities=15% Similarity=0.188 Sum_probs=96.8
Q ss_pred CCCcEEEEccCC-CHHHHHHHhccCceEEEeCCccccee---EEeccccccccccccCCCCChHHHHHHHHHhhCCCCCC
Q psy3476 350 AEVKIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPIQ---LEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTER 425 (1417)
Q Consensus 350 ~~~qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv~---v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 425 (1417)
....+|++|||+ +.+.+.+.++-+...+.++ .+|+-+ +.+.+.....+.. -+...+..+.+.|.+.+. ..+
T Consensus 374 ~~~~~il~SaTL~p~~~~~~~lGl~~~~~~~~-spf~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~i~~l~~-~~~ 448 (620)
T 4a15_A 374 KESKTIHMSGTLDPFDFYSDITGFEIPFKKIG-EIFPPENRYIAYYDGVSSKYDT---LDEKELDRMATVIEDIIL-KVK 448 (620)
T ss_dssp GGSEEEEEESSCCSHHHHHHHHCCCCCEEECC-CCSCGGGEEEEEECCC----------CHHHHHHHHHHHHHHHH-HHC
T ss_pred hCCeEEEEccCCCcHHHHHHHhCCCceeeecC-CCCCHHHeEEEEeCCCCCcCCC---CCHHHHHHHHHHHHHHHH-hCC
Confidence 345799999999 6667777664332222222 222211 1111111000000 011112334444444332 236
Q ss_pred CcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc--hhhccCCcCC--eEE
Q psy3476 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN--IAETSITIDG--IRF 501 (1417)
Q Consensus 426 g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn--Iae~GIdIP~--V~~ 501 (1417)
|.+|||+|+....+.+++.+.. .+.. ...+++..++..+++.|+ +...|+++|. .+..|||+|+ .+.
T Consensus 449 g~~lvlF~Sy~~l~~v~~~l~~-----~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~ 519 (620)
T 4a15_A 449 KNTIVYFPSYSLMDRVENRVSF-----EHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEM 519 (620)
T ss_dssp SCEEEEESCHHHHHHHTSSCCS-----CCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCE
T ss_pred CCEEEEeCCHHHHHHHHHHHHh-----cchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEE
Confidence 7899999999999988877641 1112 555666678899999998 8889999974 8999999997 446
Q ss_pred EEcCCcccceecccC-------------CCccccceeecCHhhHHhhcCcCCCCC--CCeEEEe
Q psy3476 502 VVDSGKVKEMSYDVT-------------AKMSTLQEFWISKASAEQRKGRAGRTG--PGVCYRL 550 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~-------------~~~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy~L 550 (1417)
||-.|+.-... |+. .++..-...| ......|-+||+=|.. .|..+.+
T Consensus 520 viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 520 IILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp EEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred EEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 66666542211 110 0000001112 2345679999999987 4776654
No 107
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.58 E-value=0.015 Score=73.89 Aligned_cols=63 Identities=29% Similarity=0.469 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHHh-cCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVL-KERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 40 ~~~~q~~il~~i~-~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
+...|.+++.... +.+..+|.||.|||||+.+...|... ...+|+++.|+..|+..+++|+..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 4677887777654 56799999999999998776655442 235899999999999999999864
No 108
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.15 E-value=0.029 Score=70.98 Aligned_cols=63 Identities=21% Similarity=0.347 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH---cCCCcEEEecchHHHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ---AGFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile---~~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
+...|.+++..+..++.++|.||+|+|||+.+...+.. ....+|+++.|+..|+..+.+++.+
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 46889999998888899999999999999876554432 2456899999999999999888754
No 109
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.13 E-value=0.027 Score=71.16 Aligned_cols=58 Identities=14% Similarity=0.047 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---CCCcEEEecchHHHHHHHHHHH
Q psy3476 43 YKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---GFQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 43 ~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---~~~~i~~tqPrr~aa~~~a~rv 100 (1417)
+..++.+++.+++++++.||||+|||.....+++.. ...+|++..|++..+.|+.+.+
T Consensus 11 ~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 11 AIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp HHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHH
Confidence 344566778899999999999999998755544432 2357888889988877776544
No 110
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.039 Score=71.66 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHH---HHcCCCcEEEecchHHHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL---VQAGFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~i---le~~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
+...|.+++..+..+++++|.||.|||||+.+...+ ......+|+++.|+..|+..+.+|+.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 468899999999888999999999999998765444 333457899999999999999999865
No 111
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=94.73 E-value=0.37 Score=57.13 Aligned_cols=100 Identities=13% Similarity=0.219 Sum_probs=69.2
Q ss_pred CChhhHHHHHHHHHHHhhhhhhhhhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH---
Q psy3476 1 MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ--- 77 (1417)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile--- 77 (1417)
|+++..++|+..+.....|.+... .+....-....+.+..+|.+++..+...+.+++..+-+.|||+.+..+++-
T Consensus 127 ~t~~~~e~~~k~~~d~i~Fae~~~--~i~~~~g~~~p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~ 204 (385)
T 2o0j_A 127 WTREMVEEWKKCRDDIVYFAETYC--AITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVC 204 (385)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHC--EEECSSSCEEECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhHHHHHHHHhc--cCcccccccCCCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHH
Confidence 677888899888888877764321 000000012446779999999998877788999999999999875544332
Q ss_pred -cCCCcEEEecchHHHHHHHHHHHHH
Q psy3476 78 -AGFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 78 -~~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
....+|+++.|++-.|..+..++..
T Consensus 205 ~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 205 FNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp SSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 2235799999998887776655543
No 112
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.42 E-value=0.39 Score=60.26 Aligned_cols=101 Identities=13% Similarity=0.211 Sum_probs=69.4
Q ss_pred CChhhHHHHHHHHHHHhhhhhhhhhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHH----
Q psy3476 1 MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV---- 76 (1417)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~il---- 76 (1417)
|+++..++++........|.+.- + ...........+....+|..++..+..++.+++.++-|+|||+.+..+++
T Consensus 127 ~~~~~~~~~~~~~~d~~~f~~~~-~-~~~~~~g~~~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~ 204 (592)
T 3cpe_A 127 WTREMVEEWKKCRDDIVYFAETY-C-AITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVC 204 (592)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHT-C-BCCBTTTBSBBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCHHHHHHhh-e-EeecCCCCcccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHH
Confidence 78888888888777777664331 1 11000011234667899999999886678899999999999997654432
Q ss_pred HcCCCcEEEecchHHHHHHHHHHHHHH
Q psy3476 77 QAGFQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 77 e~~~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.....+|+++.|++-.|..+...+...
T Consensus 205 ~~~~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 205 FNKDKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp TSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 223347999999988887777655443
No 113
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.33 E-value=0.06 Score=69.89 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHH---HcCCCcEEEecchHHHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV---QAGFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~il---e~~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
+...|.+++..+..+++++|.||+|+|||+.+...+. +....+|+++.|+..|+..+.+++..
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4688999999888889999999999999987654443 22446899999999999999888754
No 114
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.67 E-value=0.064 Score=64.59 Aligned_cols=51 Identities=14% Similarity=0.014 Sum_probs=38.9
Q ss_pred chhhhcccccccCCCCccCCCCCcccccccccc---chhhHHHHhhhhccccch
Q psy3476 934 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQ---IDTMLLLDLALNFGAIDS 984 (1417)
Q Consensus 934 ~~~~~~~~~~~~~~~~f~~~~gd~lt~l~~~~~---~~~~~c~~~~l~~~~~~~ 984 (1417)
.+++.+...++.....+-.+.|+|.++.+.|.- |+..||.++|+.+.++|+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (431)
T 2v6i_A 378 DGPNEHLLLENNQEIEVWTRQGQRRVLKPRWLDGRITSDHLNLKSFKEFASGKR 431 (431)
T ss_dssp CSCGGGCCCBTTBCCEEECSSCCEEECCCSSCBGGGGSSHHHHHHHHHHHTTCC
T ss_pred eCCccceecccCCceEEecCCCCeeeecceEecccccchhHHHHHHHHHhhcCC
Confidence 333443444445557777999999999999974 689999999999988774
No 115
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.73 E-value=0.31 Score=56.34 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=28.6
Q ss_pred CccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC
Q psy3476 319 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN 362 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln 362 (1417)
..-+|++||+| +....+++..++.........+-+|+.++|++
T Consensus 132 ~~~ii~lDE~d-~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 132 RKTLILIQNPE-NLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CEEEEEEECCS-SSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CceEEEEecHH-HhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 34589999999 44466666666554333344567778899984
No 116
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.71 E-value=0.69 Score=53.63 Aligned_cols=41 Identities=24% Similarity=0.410 Sum_probs=25.3
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
...+..+|||||+| .+..+....+++.+...+.+..+|+.+
T Consensus 116 ~~~~~~vliiDe~~--~l~~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 116 ARGRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSSSEEEEEECGG--GSCHHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred ccCCeEEEEEECcc--hhcHHHHHHHHHHHhcCCCceEEEEEe
Confidence 34567899999999 344555556666665444444444443
No 117
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.60 E-value=0.78 Score=51.82 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.1
Q ss_pred CCeEEEEcCCCcchhH
Q psy3476 54 ERVVIIAGDTGCGKST 69 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt 69 (1417)
...+++.||+|+|||+
T Consensus 67 ~~~vll~G~~GtGKT~ 82 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTT 82 (309)
T ss_dssp CCEEEEEECTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 3479999999999996
No 118
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.57 E-value=0.92 Score=52.45 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=26.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...++.++||||+| .+..+....+++.+..-+++..+|+.+
T Consensus 104 ~~~~~~kvviIdead--~l~~~a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 104 ARLGGAKVVWVTDAA--LLTDAAANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp CTTSSCEEEEESCGG--GBCHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred cccCCcEEEEECchh--hcCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 345678999999999 344455566677665544445555544
No 119
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=91.17 E-value=0.017 Score=70.16 Aligned_cols=75 Identities=17% Similarity=0.089 Sum_probs=54.9
Q ss_pred hcCChhhHH-hhcccccccchHHHHHHHhhhccccchhHHHHHHhhccchhhhHhhhhccccccchhhhcccccccc
Q psy3476 1107 LKHDPKQVQ-VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDL 1182 (1417)
Q Consensus 1107 ~~~~g~~l~-~~~~~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~~~lk~ilmsat~~~~~f~~yf~~~~~~~ 1182 (1417)
+++.+...+ +.+++.++.+.++||||+|++...++..+++++.... .++.++++||||.+...........|+..
T Consensus 94 ~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~~~~~~~~~pi~~ 169 (459)
T 2z83_A 94 VMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTTDPFPDSNAPIHD 169 (459)
T ss_dssp EEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCCCSSCCCSSCEEE
T ss_pred EEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcchhhhccCCCCeEE
Confidence 344444443 6667789999999999999998888888988887653 46899999999998776444334455443
No 120
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=91.11 E-value=0.22 Score=62.73 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHH---HHHHc-CC--CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ---YLVQA-GF--QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq---~ile~-~~--~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
+...|.+++. ..+..++|.|+.|||||+.+.. ++++. +. .+|+++-+++-||..+.+|+....+
T Consensus 10 Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 10 LNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp CCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 3466777776 3467789999999999987654 34444 32 4799999999999999999987754
No 121
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=89.99 E-value=0.32 Score=61.40 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhc--CCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHH
Q psy3476 41 AQYKQEIIDTVLK--ERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISL 96 (1417)
Q Consensus 41 ~~~q~~il~~i~~--~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~ 96 (1417)
...|+++++.+.. ..+.+|+|+-|.|||+.+-..+-.. ..+++||.|+..++..+
T Consensus 177 T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-~~~~~vtAP~~~a~~~l 233 (671)
T 2zpa_A 177 QPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-AGRAIVTAPAKASTDVL 233 (671)
T ss_dssp CHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-SSCEEEECSSCCSCHHH
T ss_pred CHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-HhCcEEECCCHHHHHHH
Confidence 4578899988876 5688999999999998766555443 34578888886655444
No 122
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=89.88 E-value=0.061 Score=68.43 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=75.3
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---CC----CcEEEecchHHHHHHHHHHHHHHHccccCCe
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---GF----QRIACTQPRRIACISLSKRVAYETLSQYSNL 111 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---~~----~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~ 111 (1417)
..+.+|.++++.+.+++++||++|||||||+++..++++. .. .+++++.|++.++.+.++.+.+.. ...|-.
T Consensus 13 ~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~-~~~~~~ 91 (696)
T 2ykg_A 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF-ERHGYR 91 (696)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHT-TTTTCC
T ss_pred CccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHh-ccCCce
Confidence 4578999999999999999999999999999887777642 11 689999999998888877665543 233555
Q ss_pred EEEEEeecccc------cCCccEEEEccchhHHhhcC
Q psy3476 112 VGYQIRFEKHR------REKTKIVFITEGLLLRQDSG 142 (1417)
Q Consensus 112 vGy~ir~e~~~------~~~t~I~~~T~g~llr~l~~ 142 (1417)
|+......... ...++|+|+|+|+|++.+..
T Consensus 92 v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~ 128 (696)
T 2ykg_A 92 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 128 (696)
T ss_dssp EEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT
T ss_pred EEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc
Confidence 55433322111 13578999999998876543
No 123
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.73 E-value=1 Score=51.72 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=34.4
Q ss_pred CccEEEEccchhHHhhcCCCCCCCCCCCcchhh--HHhhhhhhHHHHHHHHhhhh
Q psy3476 125 KTKIVFITEGLLLRQDSGLITDIPGPDASLSSR--ERALRHGEIKLLQAIKRKKA 177 (1417)
Q Consensus 125 ~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 177 (1417)
+..|+++-+|..++.+..+..++|..|.++-+. +...+.|.-.|.+.|+..|.
T Consensus 100 ~~pilVGGTglYi~all~gl~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~DP 154 (316)
T 3foz_A 100 RIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDP 154 (316)
T ss_dssp CEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHhCH
Confidence 456889999999999988866666544433221 12345666667777775553
No 124
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=89.57 E-value=0.026 Score=68.47 Aligned_cols=74 Identities=18% Similarity=0.105 Sum_probs=52.8
Q ss_pred hcCChhhHH-hhcccccccchHHHHHHHhhhccccchhHHHHHHhhccchhhhHhhhhccccccchhhhccccccc
Q psy3476 1107 LKHDPKQVQ-VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181 (1417)
Q Consensus 1107 ~~~~g~~l~-~~~~~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~~~lk~ilmsat~~~~~f~~yf~~~~~~ 1181 (1417)
+++.|.+.+ +.+++.++.+.++||||+|+.....+.++.++... ...++.++++||||.+...+..++++.++.
T Consensus 92 ~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 166 (451)
T 2jlq_A 92 LMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPFPQSNSPIE 166 (451)
T ss_dssp EEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSCCCSSCEE
T ss_pred EEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhhhcCCCceE
Confidence 445555444 66778899999999999998855555555555432 245689999999999888777776555544
No 125
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.10 E-value=0.22 Score=53.94 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHH
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
|-..-+..+++.+..++++.|.||.||||||.+
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 333446678888999999999999999999954
No 126
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.07 E-value=0.38 Score=50.10 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=16.5
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.++.++|.||+||||||.+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4789999999999999843
No 127
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=87.80 E-value=0.23 Score=52.05 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=16.6
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.++.++|+||+||||||.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999854
No 128
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.28 E-value=0.38 Score=48.51 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCcchhH
Q psy3476 45 QEIIDTVLKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 45 ~~il~~i~~~~~~iI~a~TGsGKTt 69 (1417)
+.+-.....+..++|.||+|||||+
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~ 39 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMT 39 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHH
Confidence 3344444677899999999999996
No 129
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.01 E-value=0.41 Score=48.23 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcchhH
Q psy3476 44 KQEIIDTVLKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 44 q~~il~~i~~~~~~iI~a~TGsGKTt 69 (1417)
++.+......+..++|.||+|+|||+
T Consensus 17 ~~~~~~~~~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 17 NREVEAAAKRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp HHHHHHHHTCSSCEEEEEETTCCHHH
T ss_pred HHHHHHHhCCCCcEEEECCCCccHHH
Confidence 33444445677889999999999996
No 130
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.82 E-value=0.27 Score=51.98 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=17.4
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+.++.|.||+||||||++
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHH
Confidence 346789999999999999854
No 131
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=86.78 E-value=0.51 Score=64.25 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHH---HcCC-----CcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV---QAGF-----QRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~il---e~~~-----~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
......|++++.. .+++++|.|.-|||||+.+.+-+. ..+. .+|+|+.+++.||..+.+|+...++.
T Consensus 9 ~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~ 83 (1232)
T 3u4q_A 9 STWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEK 83 (1232)
T ss_dssp -CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHH
Confidence 3456778888775 377999999999999998655433 3322 48999999999999999999876543
No 132
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=86.66 E-value=0.54 Score=59.75 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHH---HHHHc-CC--CcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ---YLVQA-GF--QRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq---~ile~-~~--~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
...|.+++.. .+..++|.|+.|||||+.+.. ++++. +. .+|+++-.++-||..+.+|+....+.
T Consensus 4 ~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 4 NPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 4567788774 367889999999999987654 33433 43 57999888999999999999876543
No 133
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=86.42 E-value=0.48 Score=51.93 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
.+..++++|++|+||||.+.+.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999977766654
No 134
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=86.40 E-value=1.7 Score=49.44 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=22.3
Q ss_pred CCCccEEEEecCcccccC-cchHHHHHHHHhccCCCCcEEEE
Q psy3476 317 LSSYDVLVLDEIHERHLH-GDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~-~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
..+.+++||||+| .+. .+....+++.+.....+.++|+.
T Consensus 103 ~~~~~vliiDEi~--~l~~~~~~~~L~~~le~~~~~~~iI~~ 142 (324)
T 3u61_B 103 DGRQKVIVIDEFD--RSGLAESQRHLRSFMEAYSSNCSIIIT 142 (324)
T ss_dssp SSCEEEEEEESCC--CGGGHHHHHHHHHHHHHHGGGCEEEEE
T ss_pred CCCCeEEEEECCc--ccCcHHHHHHHHHHHHhCCCCcEEEEE
Confidence 3467899999999 333 33444444444433345555553
No 135
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.07 E-value=0.32 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=17.5
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+.+++|+|++||||||++
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 456889999999999999854
No 136
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=85.91 E-value=0.33 Score=51.97 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=17.6
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..++++.|.||+||||||.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 6788999999999999999954
No 137
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.75 E-value=0.41 Score=58.87 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=20.9
Q ss_pred HHHHHhcCCeEEEEcCCCcchhHHH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+--.+..+.+++|+|||||||||.+
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHH
Confidence 4445678899999999999999965
No 138
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.67 E-value=0.32 Score=54.53 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=18.7
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+..+.|+|||||||||.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 677889999999999999954
No 139
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=85.61 E-value=0.99 Score=57.94 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHH---HHHH-cCC--CcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ---YLVQ-AGF--QRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq---~ile-~~~--~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
+...|.+++.. .+..++|.|..|||||+.+.. ++++ .+. .+|+++-.++-||..+.+|+....+.
T Consensus 12 Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 12 LNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp SCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 34667777765 356789999999999986543 3444 343 57999999999999999999887654
No 140
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=85.48 E-value=0.32 Score=51.87 Aligned_cols=19 Identities=42% Similarity=0.735 Sum_probs=15.4
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.++.++|+||+||||||.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5678999999999999854
No 141
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=85.10 E-value=0.37 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=17.3
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..++.+.|.||+||||||.+
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHH
T ss_pred ecCCCCEEEEECCCCCCHHHHH
Confidence 3567899999999999999854
No 142
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=84.99 E-value=0.69 Score=48.89 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=19.9
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
.+.+.++.|+.||||||.+.+.+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999977665543
No 143
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=84.87 E-value=0.92 Score=46.45 Aligned_cols=28 Identities=18% Similarity=0.462 Sum_probs=20.4
Q ss_pred HHHHHHHHhc--CCeEEEEcCCCcchhHHH
Q psy3476 44 KQEIIDTVLK--ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 44 q~~il~~i~~--~~~~iI~a~TGsGKTt~i 71 (1417)
.+++.+.+.. ...++|.||+|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 4455555554 368999999999999743
No 144
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=84.85 E-value=0.66 Score=49.55 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=26.7
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecch
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPR 89 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPr 89 (1417)
.++..++.|++||||||.+.+.+... ...++++.+|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 46789999999999999877766543 22456665554
No 145
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.64 E-value=0.62 Score=54.70 Aligned_cols=28 Identities=39% Similarity=0.623 Sum_probs=22.3
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~ipq 73 (1417)
.+--.+..+.+++|+|||||||||.+-.
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~ 194 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKA 194 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHH
Confidence 3444667899999999999999996543
No 146
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=84.57 E-value=0.29 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=18.1
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+.+++|.|+.||||||.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHH
Confidence 3567889999999999999854
No 147
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=84.43 E-value=0.28 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=18.5
Q ss_pred hcCCeEEEEcCCCcchhHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq 73 (1417)
..+.++.|.||+||||||.+-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4678999999999999996543
No 148
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=84.12 E-value=0.55 Score=50.39 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=17.1
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+.+++|+||+||||||++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 35789999999999999854
No 149
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=84.03 E-value=2.3 Score=48.66 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=27.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...+++++||||+| .+..+-...+++.+..-++...+|+.+
T Consensus 78 p~~~~~kvviIdead--~lt~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 78 PELYTRKYVIVHDCE--RMTQQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp CSSSSSEEEEETTGG--GBCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred cccCCceEEEeccHH--HhCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 445678999999999 344455566676665544455555543
No 150
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.75 E-value=0.77 Score=47.04 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=19.1
Q ss_pred HHHHHHHhc--CCeEEEEcCCCcchhHH
Q psy3476 45 QEIIDTVLK--ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 45 ~~il~~i~~--~~~~iI~a~TGsGKTt~ 70 (1417)
+++++.+.. ...++|.||+|+|||+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAI 59 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHH
Confidence 344555544 56889999999999974
No 151
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.72 E-value=0.49 Score=51.64 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=18.7
Q ss_pred HHhcCCeEEEEcCCCcchhHHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+.+.++++|.||+||||+||.-
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHH
Confidence 34566789999999999999653
No 152
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=83.45 E-value=0.75 Score=48.77 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=16.9
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+++++|+|++||||||+.
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHH
Confidence 456789999999999999854
No 153
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=83.41 E-value=0.58 Score=54.28 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=20.0
Q ss_pred HHHHhcCCeEEEEcCCCcchhHHH
Q psy3476 48 IDTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 48 l~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
--.+..++++.|+|||||||||.+
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHH
T ss_pred hhhccCCCEEEEECCCCCCHHHHH
Confidence 345678999999999999999953
No 154
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=83.31 E-value=0.16 Score=67.62 Aligned_cols=85 Identities=12% Similarity=0.131 Sum_probs=57.5
Q ss_pred hhhhHHHhhhccccccC---CCcccccccH-----HHHhhhhcCCccchhhc------chHHHHHHHHHhcCCCcccCCC
Q psy3476 795 EEEEEEEEGERLESRTG---PGVCYRLYSE-----EQYSLLAEYSTPEIRRV------SIDSLLLSLVCMGLGDVRKFPF 860 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~---pG~CyRLyt~-----~~~~~l~~~~~PEI~r~------~L~~~vL~lk~~g~~~~~~f~~ 860 (1417)
.|.++..||.|||||.+ +|+||.+++. ..+..+. ...|+.+++ ++..-+|++...++.++..+.|
T Consensus 462 ~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i-~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf 540 (997)
T 4a4z_A 462 LTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVT-MGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSF 540 (997)
T ss_dssp CCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHH-HSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSH
T ss_pred CCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHh-cCCCcccccccccchHHHHHHHhhccccHHHHHHHHH
Confidence 37889999999999987 9999999943 2333332 234666666 4555556667777777777888
Q ss_pred CCCCCccchHHHHHHHhhcc
Q psy3476 861 LEAPPAENIESSVRSLTQHG 880 (1417)
Q Consensus 861 l~~P~~~~l~~A~~~L~~lg 880 (1417)
.+.|....+......|..++
T Consensus 541 ~~~~~~~~~~~~~~~l~~l~ 560 (997)
T 4a4z_A 541 SENAKETLQPEHEKQIKVLQ 560 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHH
Confidence 77666555555555554443
No 155
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=83.27 E-value=0.48 Score=49.78 Aligned_cols=18 Identities=44% Similarity=0.807 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+++++|.||+||||||.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467899999999999854
No 156
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.05 E-value=0.84 Score=54.71 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=20.0
Q ss_pred HHHHHHHH--hcCCeEEEEcCCCcchhHHH
Q psy3476 44 KQEIIDTV--LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 44 q~~il~~i--~~~~~~iI~a~TGsGKTt~i 71 (1417)
+.+++..+ ..+..++|+|||||||||.+
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 33444433 34568999999999999954
No 157
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=82.67 E-value=0.69 Score=49.71 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=17.4
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
.++.++|+||+||||||++-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 67899999999999998543
No 158
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=82.49 E-value=0.71 Score=55.55 Aligned_cols=45 Identities=29% Similarity=0.507 Sum_probs=34.9
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rv 100 (1417)
..++++|.|+.|||||+.+...+. ..++++..|++.++..+.+++
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~---~~~~lVlTpT~~aa~~l~~kl 204 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN---FEEDLILVPGRQAAEMIRRRA 204 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC---TTTCEEEESCHHHHHHHHHHH
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc---cCCeEEEeCCHHHHHHHHHHh
Confidence 456899999999999998766542 256788889988887776665
No 159
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=82.19 E-value=2.6 Score=50.70 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=26.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCC
Q psy3476 709 SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSG 741 (1417)
Q Consensus 709 ~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~g 741 (1417)
.++-++--|.+.+.+.++.+-..|+++.+++++
T Consensus 398 ~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 430 (443)
T 3dm5_A 398 IKRIARGSGTSTKDVKELLDQYRQMKKLFKSMN 430 (443)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 446777888888888888888888888888764
No 160
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.17 E-value=1.2 Score=47.34 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=24.7
Q ss_pred CCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEcc
Q psy3476 318 SSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSA 359 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSA 359 (1417)
.+..+|||||+| .++.+....+++.+........+|+.|.
T Consensus 125 ~~~~vlviDe~~--~l~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 125 GRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSSEEEEEETGG--GSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred CCceEEEEECcc--cccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 345789999999 3455555556665554444555555543
No 161
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.02 E-value=1.2 Score=46.90 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=14.6
Q ss_pred CeEEEEcCCCcchhHH
Q psy3476 55 RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ 70 (1417)
..++|.||+|+|||+.
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999974
No 162
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=81.90 E-value=0.66 Score=54.44 Aligned_cols=20 Identities=40% Similarity=0.745 Sum_probs=17.1
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+..++|+|||||||||.+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45669999999999999954
No 163
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=81.32 E-value=1 Score=46.82 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
.++++++|++||||||+.
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 568899999999999843
No 164
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=81.29 E-value=0.67 Score=53.89 Aligned_cols=17 Identities=47% Similarity=0.882 Sum_probs=14.9
Q ss_pred cCCeEEEEcCCCcchhH
Q psy3476 53 KERVVIIAGDTGCGKST 69 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt 69 (1417)
.+++++|+||||||||+
T Consensus 39 ~~~lIvI~GPTgsGKTt 55 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSR 55 (339)
T ss_dssp CCEEEEEECSTTSSHHH
T ss_pred CCceEEEECCCCCCHHH
Confidence 44689999999999997
No 165
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=81.26 E-value=0.85 Score=46.26 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=15.6
Q ss_pred CeEEEEcCCCcchhHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq 73 (1417)
.+++|+|++||||||+.-.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKL 20 (179)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3689999999999996543
No 166
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=81.26 E-value=0.41 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=14.6
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+.++.|.||+||||||.+
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CEECCCEEEEECSCC----CHH
T ss_pred ccCCCCEEEEECCCCCCHHHHH
Confidence 3467889999999999999854
No 167
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.04 E-value=0.68 Score=48.09 Aligned_cols=18 Identities=33% Similarity=0.680 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+..++|+|+.||||||+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 568899999999999853
No 168
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=80.88 E-value=0.61 Score=54.99 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=18.2
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+.+++|+|||||||||.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 456789999999999999964
No 169
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=80.78 E-value=0.66 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=21.5
Q ss_pred HHhcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
-+..+.++.|.||+||||||.+-+++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45688999999999999999765443
No 170
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=80.78 E-value=4.3 Score=52.26 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=18.1
Q ss_pred CccEEEEecCcccccCcchHHHHHHHHhc
Q psy3476 319 SYDVLVLDEIHERHLHGDFLLGVIKCLLH 347 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~d~ll~llk~l~~ 347 (1417)
.+++|+|||+| ....++...+++.+..
T Consensus 579 ~~~vl~lDEi~--~~~~~~~~~Ll~~le~ 605 (758)
T 3pxi_A 579 PYSVVLLDAIE--KAHPDVFNILLQVLED 605 (758)
T ss_dssp SSSEEEEECGG--GSCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCcc--ccCHHHHHHHHHHhcc
Confidence 35689999998 3455666666665544
No 171
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=80.62 E-value=0.73 Score=50.01 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=21.6
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+..+.+++|.|++|+|||+.+.|++.+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 345789999999999999877666543
No 172
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=80.43 E-value=0.76 Score=52.90 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=15.1
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
.++++|+||||||||+..
T Consensus 3 ~~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCcCCHHHHH
Confidence 457899999999999743
No 173
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=80.43 E-value=1.6 Score=45.71 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=19.5
Q ss_pred HHHHHHHHhcC--CeEEEEcCCCcchhHH
Q psy3476 44 KQEIIDTVLKE--RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 44 q~~il~~i~~~--~~~iI~a~TGsGKTt~ 70 (1417)
.+++.+.+..+ ..++|.||+|+|||+.
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTAT 54 (226)
T ss_dssp HHHHHHHHHTTCCCCEEEECSTTSSHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 34455555544 3599999999999974
No 174
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=80.42 E-value=0.74 Score=49.91 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=21.1
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
+..+.+++|.|++||||||.+.+++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999997665544
No 175
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=80.27 E-value=0.76 Score=50.08 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=17.1
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..++.++|+||.||||||.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 457889999999999999854
No 176
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=79.98 E-value=0.94 Score=48.22 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=16.6
Q ss_pred hcCCeEEEEcCCCcchhHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ 70 (1417)
..+..++|+||+||||||+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCEEEECCTTSCHHHH
T ss_pred ccCCEEEEECCCCCCHHHH
Confidence 4577999999999999984
No 177
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=79.47 E-value=0.81 Score=48.71 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=20.4
Q ss_pred HHhcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
-+..+.+++|.|++||||||.+.+++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 34567899999999999998655433
No 178
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=79.41 E-value=0.65 Score=51.11 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.2
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..++++.|.||.||||||.+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 357889999999999999964
No 179
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=79.40 E-value=0.67 Score=49.72 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=20.8
Q ss_pred HHhcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
-+..++++.|.||+||||||.+-+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999999999765543
No 180
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=79.34 E-value=0.15 Score=64.44 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=47.3
Q ss_pred hcCChhhHH-hhcccccccchHHHHHHHhhhccccchhHHHHHHhhccchhhhHhhhhcccccc
Q psy3476 1107 LKHDPKQVQ-VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIE 1169 (1417)
Q Consensus 1107 ~~~~g~~l~-~~~~~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~~~lk~ilmsat~~~~ 1169 (1417)
+++.+.+.+ +..++.++.+.++||||+|+.....+..+..++..+ .+++.++++||||.+..
T Consensus 259 ~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l-~~~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 259 LMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-EMGEAAAIFMTATPPGS 321 (618)
T ss_dssp EEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HHTSCEEEEECSSCTTC
T ss_pred EEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHh-cccCccEEEEECCCchh
Confidence 344444443 556678999999999999999776777777777666 33678999999999766
No 181
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=79.33 E-value=0.85 Score=48.38 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=16.3
Q ss_pred hcCCeEEEEcCCCcchhHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ 70 (1417)
..+.+++|.|+.||||||+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4578999999999999984
No 182
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=79.14 E-value=1.1 Score=48.40 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=16.3
Q ss_pred hcCCeEEEEcCCCcchhHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ip 72 (1417)
.....++|+|++||||||+.-
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHH
Confidence 345689999999999998653
No 183
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=78.92 E-value=1.4 Score=45.91 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=17.7
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.....+++|+|+.||||||+.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHH
Confidence 456779999999999999854
No 184
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=78.91 E-value=0.91 Score=48.89 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=16.0
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+..++|.||||+|||+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35678999999999997443
No 185
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=78.89 E-value=0.83 Score=48.85 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=20.7
Q ss_pred HHhcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
-+..+.+++|.||+||||||.+-+++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 34568899999999999998655443
No 186
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=78.81 E-value=0.87 Score=46.68 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+.+++|.|+.||||||+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999843
No 187
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=78.60 E-value=1.8 Score=46.91 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=16.7
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+++.|+.|||||||+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~ 20 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTAR 20 (213)
T ss_dssp CCCEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4678999999999999975
No 188
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=78.57 E-value=1.6 Score=52.08 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=20.9
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
.+.++.|.||+||||||.+.++++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 5789999999999999977766543
No 189
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=78.41 E-value=1.1 Score=48.36 Aligned_cols=17 Identities=35% Similarity=0.685 Sum_probs=14.3
Q ss_pred eEEEEcCCCcchhHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ip 72 (1417)
++++.||+||||+||.-
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999999654
No 190
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=78.40 E-value=1.2 Score=49.36 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=13.0
Q ss_pred eEEEEcCCCcchhH
Q psy3476 56 VVIIAGDTGCGKST 69 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt 69 (1417)
+++|+|+|||||||
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 67999999999997
No 191
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=78.28 E-value=2.1 Score=45.84 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=15.8
Q ss_pred cCCeEEEEcCCCcchhHH
Q psy3476 53 KERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ 70 (1417)
.+..++|.||+|+|||+.
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467999999999999973
No 192
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=78.21 E-value=11 Score=40.03 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=56.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch-----h-hccCCcCC
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI-----A-ETSITIDG 498 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI-----a-e~GIdIP~ 498 (1417)
...+||.+|+++-+.++++.++++....++..+..++|+.+..++...+.. +...|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc---CCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999999998887654457889999999998776655542 44589999962 1 23456677
Q ss_pred eEEEE
Q psy3476 499 IRFVV 503 (1417)
Q Consensus 499 V~~VI 503 (1417)
+.+||
T Consensus 159 ~~~lV 163 (220)
T 1t6n_A 159 IKHFI 163 (220)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 76655
No 193
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=77.99 E-value=0.89 Score=46.68 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=14.5
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
.+++|+|+.||||||+.
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 36899999999999854
No 194
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=77.79 E-value=1.5 Score=46.04 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=17.1
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+..++|+|+.||||||+.-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46789999999999999754
No 195
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=77.76 E-value=8.2 Score=41.51 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=56.6
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh------hccCCc
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA------ETSITI 496 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa------e~GIdI 496 (1417)
..+..+||.+|+++-+.++++.++++.....++.+..++|+.+..++...+. ...|+|+|.-- ...++.
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~~~~~ 164 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELDYLNP 164 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTTSSCG
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcCCccc
Confidence 3456899999999999999999988765445788999999999887766553 35899999731 234556
Q ss_pred CCeEEEE
Q psy3476 497 DGIRFVV 503 (1417)
Q Consensus 497 P~V~~VI 503 (1417)
.++.+||
T Consensus 165 ~~~~~lV 171 (230)
T 2oxc_A 165 GSIRLFI 171 (230)
T ss_dssp GGCCEEE
T ss_pred ccCCEEE
Confidence 6665444
No 196
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=77.74 E-value=0.82 Score=48.91 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=15.8
Q ss_pred cCCeEEEEcCCCcchhHH
Q psy3476 53 KERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ 70 (1417)
.+.++.|.||+||||||.
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466899999999999984
No 197
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=77.73 E-value=3.1 Score=53.72 Aligned_cols=78 Identities=12% Similarity=0.097 Sum_probs=65.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc-hhhccCCcCCeEEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN-IAETSITIDGIRFVV 503 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn-Iae~GIdIP~V~~VI 503 (1417)
+.+++|.+|++.-+.+.++.+.++... .++.+..+||+++..+|..+++...+|...|+|+|. .+...+.+.++.+||
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~-~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSK-FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC-SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhh-cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 568999999999999999988876532 367899999999999999999999999999999996 444567788887665
No 198
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=77.59 E-value=0.8 Score=50.48 Aligned_cols=45 Identities=11% Similarity=0.184 Sum_probs=27.5
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHh---ccCCCCcEEEEccCC
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLL---HSTAEVKIILMSATI 361 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~---~~r~~~qvIlmSATl 361 (1417)
.+.+-+++++||.= -.++......+...+. ....+.-+|+.|-.+
T Consensus 142 L~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~ 189 (237)
T 2cbz_A 142 VYSNADIYLFDDPL-SAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSM 189 (237)
T ss_dssp HHHCCSEEEEESTT-TTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCS
T ss_pred HhcCCCEEEEeCcc-cccCHHHHHHHHHHHHHHHhhcCCCEEEEEecCh
Confidence 34567899999997 5677666666666663 222344445554443
No 199
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=77.57 E-value=1.9 Score=49.46 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=20.7
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
..+.+++|.|++|||||+.+.+++.+
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999876665543
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=77.45 E-value=7.1 Score=46.85 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=30.4
Q ss_pred CeEEEEcCCCcchhHHHHHH---HHHcCCC-cEEEecchHHHHHHHHHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQY---LVQAGFQ-RIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~---ile~~~~-~i~~tqPrr~aa~~~a~rva~ 102 (1417)
.+++++|++||||||.+... +...+.. .++...+.|.++..-...++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~ 149 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGN 149 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHH
Confidence 48899999999999975433 3344443 244556777776554444433
No 201
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=77.44 E-value=1 Score=46.34 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=14.9
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
+.+++|+|+.||||||.
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 46789999999999983
No 202
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=77.36 E-value=1.4 Score=44.84 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=14.0
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
+++|+|+.||||||+.
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999843
No 203
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=77.22 E-value=1.4 Score=45.38 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=17.9
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..++++.|.||.||||||.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 67889999999999999854
No 204
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=76.89 E-value=0.97 Score=46.54 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=15.5
Q ss_pred cCCeEEEEcCCCcchhHH
Q psy3476 53 KERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ 70 (1417)
.+.+++|+|+.||||||+
T Consensus 7 ~g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp TSEEEEEECSTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356899999999999984
No 205
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=76.71 E-value=1.3 Score=45.21 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=16.3
Q ss_pred cCCeEEEEcCCCcchhHH
Q psy3476 53 KERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ 70 (1417)
.++.++|.||+||||||.
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678999999999999984
No 206
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=76.69 E-value=1 Score=48.71 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=21.3
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
+..+.++.|.||+||||||.+.+++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 44678999999999999997766554
No 207
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=76.67 E-value=0.85 Score=49.78 Aligned_cols=50 Identities=22% Similarity=0.135 Sum_probs=29.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHH
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELF 366 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~ 366 (1417)
..+.+-+++++||-- -.+|......+...+......-..|+++ |=+.+..
T Consensus 154 al~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~l~~~g~tvi~v-tHd~~~~ 203 (224)
T 2pcj_A 154 ALANEPILLFADEPT-GNLDSANTKRVMDIFLKINEGGTSIVMV-THERELA 203 (224)
T ss_dssp HTTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEE-CSCHHHH
T ss_pred HHHcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEE-cCCHHHH
Confidence 456778999999997 5667655555555444432222344443 4455443
No 208
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=76.64 E-value=1.5 Score=48.27 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=16.3
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
....++|.|+.||||||+.-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 44578999999999998653
No 209
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=76.58 E-value=1.9 Score=45.06 Aligned_cols=17 Identities=47% Similarity=0.669 Sum_probs=14.5
Q ss_pred eEEEEcCCCcchhHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ip 72 (1417)
.++|.|+.||||||+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999653
No 210
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=76.35 E-value=15 Score=38.34 Aligned_cols=76 Identities=8% Similarity=0.162 Sum_probs=54.8
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc-----hhhc-cCCcC
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN-----IAET-SITID 497 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn-----Iae~-GIdIP 497 (1417)
.+..+||.+|+++-+.++++.+.++.....+..+..++|+.+..++...+. +...|+|+|. .+.. .+...
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 345799999999999999999888765545788999999998776554432 3467999996 2222 34556
Q ss_pred CeEEEE
Q psy3476 498 GIRFVV 503 (1417)
Q Consensus 498 ~V~~VI 503 (1417)
++.+||
T Consensus 146 ~~~~lV 151 (206)
T 1vec_A 146 HVQMIV 151 (206)
T ss_dssp TCCEEE
T ss_pred cCCEEE
Confidence 666554
No 211
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=76.29 E-value=1.6 Score=48.28 Aligned_cols=20 Identities=30% Similarity=0.523 Sum_probs=16.8
Q ss_pred HHhcCCeEEEEcCCCcchhH
Q psy3476 50 TVLKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt 69 (1417)
....+..++|.||+|+|||+
T Consensus 25 ~~~~~~~vll~G~~GtGKt~ 44 (265)
T 2bjv_A 25 LAPLDKPVLIIGERGTGKEL 44 (265)
T ss_dssp HTTSCSCEEEECCTTSCHHH
T ss_pred HhCCCCCEEEECCCCCcHHH
Confidence 34567789999999999996
No 212
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=76.27 E-value=1.6 Score=45.10 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=17.3
Q ss_pred cCCeEEEEcCCCcchhHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq 73 (1417)
..++++|+|++||||||+.-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 467899999999999986543
No 213
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=76.26 E-value=0.87 Score=51.44 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=18.8
Q ss_pred HhcCCeEEEEcCCCcchhHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
+..++++.|.||.||||||.+-
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999999653
No 214
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=76.24 E-value=1.9 Score=45.11 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=17.4
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+....+++|+|++||||||+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 445678999999999999854
No 215
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=76.18 E-value=1 Score=47.94 Aligned_cols=20 Identities=45% Similarity=0.448 Sum_probs=16.1
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+.++.|.|++||||||.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHH
Confidence 35668899999999999853
No 216
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=76.05 E-value=1.6 Score=45.45 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=16.5
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+..++|+|+.||||||+.-
T Consensus 4 ~~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35688999999999999653
No 217
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=75.95 E-value=2.9 Score=47.83 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=15.8
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+..+++.||||+|||+.+
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 579999999999999743
No 218
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=75.62 E-value=0.92 Score=47.44 Aligned_cols=17 Identities=47% Similarity=0.755 Sum_probs=14.6
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
.+++|.||.||||||.+
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57899999999999854
No 219
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=75.58 E-value=0.86 Score=52.33 Aligned_cols=48 Identities=15% Similarity=0.202 Sum_probs=28.4
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHH
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELF 366 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~ 366 (1417)
.+.+-+++|+||.= -.++......+...+.....+ +.+++. |=+...+
T Consensus 205 L~~~p~iLlLDEPt-s~LD~~~~~~i~~~l~~l~~~-~Tvi~i-tH~l~~~ 252 (306)
T 3nh6_A 205 ILKAPGIILLDEAT-SALDTSNERAIQASLAKVCAN-RTTIVV-AHRLSTV 252 (306)
T ss_dssp HHHCCSEEEEECCS-SCCCHHHHHHHHHHHHHHHTT-SEEEEE-CCSHHHH
T ss_pred HHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCC-CEEEEE-EcChHHH
Confidence 35567899999997 566665555555555444344 455553 4454443
No 220
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=75.49 E-value=1.3 Score=45.88 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=15.8
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..++++|+.||||||+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3557899999999999854
No 221
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=75.43 E-value=1.1 Score=47.52 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=16.7
Q ss_pred hcCCeEEEEcCCCcchhHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ 70 (1417)
..+.+++|.|+.||||||.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp SCCEEEEEECSTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 5678999999999999983
No 222
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=75.34 E-value=1.3 Score=46.02 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=15.1
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
.+++|+||+||||||.+
T Consensus 27 g~~~i~G~NGsGKStll 43 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIG 43 (182)
T ss_dssp SEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 48899999999999864
No 223
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=75.31 E-value=1.6 Score=47.52 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=27.5
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecch
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPR 89 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPr 89 (1417)
.+.+.+++|+.||||||.+.+.+... ...++++.+|.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~ 65 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 45688899999999999888776653 22466666665
No 224
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=75.29 E-value=0.98 Score=49.45 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=28.9
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHH-hccCCCCcEEEEccCCCHHHH
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCL-LHSTAEVKIILMSATINIELF 366 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l-~~~r~~~qvIlmSATln~~~~ 366 (1417)
.+.+-+++++||-- -.++......+.+.+ .....+ +.|+++ |=+.+.+
T Consensus 145 l~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~~~-~tvi~v-tH~~~~~ 193 (229)
T 2pze_A 145 VYKDADLYLLDSPF-GYLDVLTEKEIFESCVCKLMAN-KTRILV-TSKMEHL 193 (229)
T ss_dssp HHSCCSEEEEESTT-TTSCHHHHHHHHHHCCCCCTTT-SEEEEE-CCCHHHH
T ss_pred HhcCCCEEEEECcc-cCCCHHHHHHHHHHHHHHhhCC-CEEEEE-cCChHHH
Confidence 45677899999997 667766666666543 233333 445544 4455443
No 225
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=75.17 E-value=0.97 Score=49.09 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=18.2
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..++++.|.||.||||||.+
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 357889999999999999964
No 226
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=75.17 E-value=2.8 Score=49.33 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=54.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
++.+||.+|+++-+.++++.+..+.. .++.+..+||+.+..++....+....|...|+|+|+-
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~ 126 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 126 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHH
Confidence 46899999999999999999988654 5788999999999988877777777787899999973
No 227
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=75.09 E-value=1.8 Score=46.19 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=14.6
Q ss_pred eEEEEcCCCcchhHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq 73 (1417)
.++|.|+.||||||+.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986543
No 228
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=75.08 E-value=1 Score=50.45 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=30.3
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccCCCHHHHHHHh
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSATln~~~~~~~f 370 (1417)
.+.+-+++++||-- -.+|......+...+.... .+.-+|+. |=+.+.+..+.
T Consensus 168 L~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l~~~g~tvi~v--tHd~~~~~~~~ 220 (262)
T 1b0u_A 168 LAMEPDVLLFDEPT-SALDPELVGEVLRIMQQLAEEGKTMVVV--THEMGFARHVS 220 (262)
T ss_dssp HHTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHTTCCEEEE--CSCHHHHHHHC
T ss_pred HhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhCCCEEEEE--eCCHHHHHHhC
Confidence 45677899999997 5677655555554444332 23334443 44655555554
No 229
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=75.06 E-value=1 Score=50.01 Aligned_cols=42 Identities=10% Similarity=0.213 Sum_probs=26.1
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
..+.+-+++++||.- -.++......+...+.....+ +.|+++
T Consensus 159 aL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~g-~tviiv 200 (247)
T 2ff7_A 159 ALVNNPKILIFDEAT-SALDYESEHVIMRNMHKICKG-RTVIII 200 (247)
T ss_dssp HHTTCCSEEEECCCC-SCCCHHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred HHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHcCC-CEEEEE
Confidence 346678899999997 567765555555554443333 344444
No 230
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=75.05 E-value=1.1 Score=50.59 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=22.8
Q ss_pred HHHHHhcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
+.-.+..+.+++|.|++||||||.+-++.
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 44456688999999999999999665543
No 231
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=75.05 E-value=1 Score=50.28 Aligned_cols=21 Identities=52% Similarity=0.665 Sum_probs=18.3
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..++++.|.||.||||||.+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EeCCCEEEEECCCCCCHHHHH
Confidence 357889999999999999964
No 232
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=75.03 E-value=1.7 Score=46.15 Aligned_cols=17 Identities=47% Similarity=0.851 Sum_probs=14.6
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
+.+||+||.|+||||++
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999854
No 233
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=74.99 E-value=1.2 Score=49.96 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=21.5
Q ss_pred HHhcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
-+..+.+++|.||+||||||.+.+++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 35678999999999999999765544
No 234
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=74.97 E-value=1.6 Score=50.08 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=24.6
Q ss_pred CeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecch
Q psy3476 55 RVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPR 89 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPr 89 (1417)
++++|+|+.||||||.+-..+-.....++++..|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 47899999999999977554433333466666553
No 235
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=74.95 E-value=1.2 Score=46.22 Aligned_cols=16 Identities=44% Similarity=0.684 Sum_probs=14.0
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
.++|+|+.||||||+.
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999843
No 236
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=74.91 E-value=5.3 Score=46.03 Aligned_cols=110 Identities=6% Similarity=-0.105 Sum_probs=62.5
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCC-----cCC
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT-----IDG 498 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GId-----IP~ 498 (1417)
.+.+||||+...+..+-+.+.+.. .++....+.|.....++. . .+....|.+.|....-|++ .-+
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~-----~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~~gin~~~~nl~~ 193 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLG-----NKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGINFTKYPIKSKAR 193 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTT-----SSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSC
T ss_pred CCCEEEEEECChhHHHHHHHHHhc-----CCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCCCCcCcccccCCC
Confidence 467999999998888877777755 678899999885543322 1 2345566666665555565 445
Q ss_pred eEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCC--CCCCCeEEEecCHHHHH
Q psy3476 499 IRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG--RTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 499 V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAG--R~g~G~cy~L~t~~~~~ 557 (1417)
.+.||- ||+.-+.+.= --++..|+-|.| ...+=.+|||++....+
T Consensus 194 aD~VI~--------~DsdwNp~~d------~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 194 FDMLIC--------LDTTVDTSQK------DIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CSEEEE--------CSTTCCTTSH------HHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCEEEE--------ECCCCCCCCh------HHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 666665 7765443321 012223444442 22256799998766554
No 237
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=74.85 E-value=0.88 Score=53.90 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=57.6
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---CCCcEEEecchHHHHHHHHHHHHHHH
Q psy3476 37 SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---GFQRIACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 37 ~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---~~~~i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
.++.+.+|.++++.+.++ .++|++|||+|||.++..++.+. ...+++++.|++.++.+.++++.+..
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 356789999999999998 89999999999999988887764 45689999999999888888887664
No 238
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=74.75 E-value=1.5 Score=45.51 Aligned_cols=18 Identities=44% Similarity=0.652 Sum_probs=15.3
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
...++|+|++||||||+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 457899999999999854
No 239
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=74.74 E-value=1.1 Score=50.25 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=25.9
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
.+.+-+++++||.- -.++......+...+.....+ +.|+++
T Consensus 170 L~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~l~~~-~tviiv 210 (260)
T 2ghi_A 170 LLKDPKIVIFDEAT-SSLDSKTEYLFQKAVEDLRKN-RTLIII 210 (260)
T ss_dssp HHHCCSEEEEECCC-CTTCHHHHHHHHHHHHHHTTT-SEEEEE
T ss_pred HHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHhcCC-CEEEEE
Confidence 34567899999997 567766655555555544444 445544
No 240
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=74.73 E-value=1.9 Score=45.97 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=14.8
Q ss_pred eEEEEcCCCcchhHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq 73 (1417)
.++|+|+.||||||+.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999996544
No 241
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=74.50 E-value=1.1 Score=49.54 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=31.3
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccCCCHHHHHHHh
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSATln~~~~~~~f 370 (1417)
..+.+-+++++||-- -.++......+...+.... .+.-+|+. |=+.+.+..+.
T Consensus 153 aL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~g~tvi~v--tHd~~~~~~~~ 206 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPS-LGLAPILVSEVFEVIQKINQEGTTILLV--EQNALGALKVA 206 (240)
T ss_dssp HHTTCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHTTCCEEEE--ESCHHHHHHHC
T ss_pred HHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEE--ecCHHHHHHhC
Confidence 345678899999997 5677665555555444432 23334443 44555555554
No 242
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=74.49 E-value=1.3 Score=46.57 Aligned_cols=16 Identities=44% Similarity=0.559 Sum_probs=13.8
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
.++|.|+.||||||+.
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 5789999999999843
No 243
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=74.38 E-value=1.1 Score=50.43 Aligned_cols=50 Identities=18% Similarity=0.079 Sum_probs=29.3
Q ss_pred CccEEEEecCcccccCcchHHHHHHHHhccCCC-CcEEEEccCCCHHHHHHHh
Q psy3476 319 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-VKIILMSATINIELFHTYF 370 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~-~qvIlmSATln~~~~~~~f 370 (1417)
+-+++++||-= -.++......+...+...... -..|+++ |=+.+....+.
T Consensus 165 ~p~lLllDEPt-s~LD~~~~~~i~~~l~~l~~~~~~tvi~v-tHdl~~~~~~~ 215 (266)
T 4g1u_C 165 TPRWLFLDEPT-SALDLYHQQHTLRLLRQLTRQEPLAVCCV-LHDLNLAALYA 215 (266)
T ss_dssp CCEEEEECCCC-SSCCHHHHHHHHHHHHHHHHHSSEEEEEE-CSCHHHHHHHC
T ss_pred CCCEEEEeCcc-ccCCHHHHHHHHHHHHHHHHcCCCEEEEE-EcCHHHHHHhC
Confidence 67899999997 566665555555544443222 2344443 55666666665
No 244
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=74.30 E-value=0.94 Score=50.02 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.1
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..++++.|.||.||||||.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 357889999999999999964
No 245
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=74.03 E-value=1.4 Score=48.26 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=16.8
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
...+++|.|+.||||||++-
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35789999999999999653
No 246
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=73.86 E-value=1.3 Score=46.82 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=15.3
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+..++|.|+.||||||+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 467899999999999843
No 247
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=73.78 E-value=1.3 Score=48.33 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=16.9
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+.++.|.|+.||||||++
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHH
T ss_pred CCceEEEEECCCCCCHHHHH
Confidence 35678999999999999964
No 248
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=73.77 E-value=1.1 Score=47.72 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=18.1
Q ss_pred HHHhcCCeEEEEcCCCcchhHHH
Q psy3476 49 DTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 49 ~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+.+..+.++.|+|++||||||+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHH
Confidence 34455678999999999999843
No 249
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=73.70 E-value=1.1 Score=50.15 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=27.3
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
.+.+-+++++||-- -.+|......+...+......-+.|++
T Consensus 179 L~~~p~lLlLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tvii 219 (267)
T 2zu0_C 179 AVLEPELCILDESD-SGLDIDALKVVADGVNSLRDGKRSFII 219 (267)
T ss_dssp HHHCCSEEEEESTT-TTCCHHHHHHHHHHHHTTCCSSCEEEE
T ss_pred HHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 34567899999997 667776666777766665433344444
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=73.70 E-value=2 Score=45.32 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=14.9
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
..+++|+|+.||||||+
T Consensus 18 ~~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SSCEEEECSTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45899999999999984
No 251
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=73.60 E-value=1.1 Score=49.58 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=26.0
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCC-CCcEEEEc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-EVKIILMS 358 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~-~~qvIlmS 358 (1417)
+.+-+++++||.- -.+|......+...+..... +.-+|+.|
T Consensus 159 ~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tvi~vt 200 (250)
T 2d2e_A 159 VLEPTYAVLDETD-SGLDIDALKVVARGVNAMRGPNFGALVIT 200 (250)
T ss_dssp HHCCSEEEEECGG-GTTCHHHHHHHHHHHHHHCSTTCEEEEEC
T ss_pred HcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4567899999997 66777666666665555433 33344444
No 252
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=73.60 E-value=3.7 Score=46.43 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=16.2
Q ss_pred CCeEEEEcCCCcchhHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq 73 (1417)
...++|+|+.||||||++-.
T Consensus 33 ~~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35789999999999986543
No 253
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=73.51 E-value=1.3 Score=45.80 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.0
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+.+++|+|+.||||||+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4668899999999999853
No 254
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=73.41 E-value=1.5 Score=47.14 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCcchhHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ip 72 (1417)
..++.|.|++||||||+.-
T Consensus 5 ~~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578999999999999653
No 255
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=73.39 E-value=1.4 Score=44.96 Aligned_cols=18 Identities=39% Similarity=0.720 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
..+.+|.||+|||||+.+
T Consensus 23 ~g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLL 40 (149)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 458899999999999864
No 256
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=73.32 E-value=1.2 Score=49.98 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=32.6
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
..+.+-+++++||-= -.+|......+...+......-..|+++ |=+.+.+..+.
T Consensus 173 aL~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l~~~g~tvi~v-tHd~~~~~~~~ 226 (263)
T 2olj_A 173 ALAMEPKIMLFDEPT-SALDPEMVGEVLSVMKQLANEGMTMVVV-THEMGFAREVG 226 (263)
T ss_dssp HHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHTTCEEEEE-CSCHHHHHHHC
T ss_pred HHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEE-cCCHHHHHHhC
Confidence 346678899999997 6677665555555544432222344443 55666665555
No 257
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.32 E-value=1.2 Score=49.75 Aligned_cols=54 Identities=22% Similarity=0.112 Sum_probs=31.6
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
..+.+-+++++||-- -.++......+...+......-+.|+++ |=+.+.+..+.
T Consensus 160 aL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tiiiv-tHd~~~~~~~~ 213 (256)
T 1vpl_A 160 ALMVNPRLAILDEPT-SGLDVLNAREVRKILKQASQEGLTILVS-SHNMLEVEFLC 213 (256)
T ss_dssp HHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEE-ECCHHHHTTTC
T ss_pred HHHcCCCEEEEeCCc-cccCHHHHHHHHHHHHHHHhCCCEEEEE-cCCHHHHHHHC
Confidence 346678899999997 5677665555555544432222445553 44555544443
No 258
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=73.18 E-value=1.5 Score=46.36 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=16.2
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..++|+|+.||||||+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999853
No 259
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=73.09 E-value=1.2 Score=50.07 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=31.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCC-CCcEEEEccCCCHHH
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-EVKIILMSATINIEL 365 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~-~~qvIlmSATln~~~ 365 (1417)
..+.+-+++++||.- -.+|......+...+..... .-+.|+++ |=+.+.
T Consensus 170 aL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~~~g~tviiv-tHd~~~ 219 (271)
T 2ixe_A 170 ALIRKPRLLILDNAT-SALDAGNQLRVQRLLYESPEWASRTVLLI-TQQLSL 219 (271)
T ss_dssp HHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHCTTTTTSEEEEE-CSCHHH
T ss_pred HHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHhhcCCEEEEE-eCCHHH
Confidence 346778999999998 67777666666666665543 23445554 445444
No 260
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.99 E-value=2.4 Score=49.48 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.0
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
..+.++.|.||.||||||.+.+++..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999977665543
No 261
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=72.98 E-value=2.4 Score=45.84 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=16.7
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+++.|+.|||||||+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEEcCCCCCHHHHH
Confidence 4678999999999999975
No 262
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=72.59 E-value=1.3 Score=49.72 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=27.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccC
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSAT 360 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSAT 360 (1417)
..+.+-+++++||-- -.+|......+...+.... ...-+|+.|--
T Consensus 152 aL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 152 VIVHEPDILILDEPL-VGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp HHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHcCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 346678999999998 6677766665555554432 23344444433
No 263
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=72.59 E-value=1.7 Score=46.38 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=17.8
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+.+++|+|+.||||||+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 456789999999999999843
No 264
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=72.57 E-value=1.6 Score=45.91 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=27.5
Q ss_pred CCCccEEEEecCc-ccccCcchHHHHHHHHhccCCCCcEEEEcc-CCCHHHHHHHh
Q psy3476 317 LSSYDVLVLDEIH-ERHLHGDFLLGVIKCLLHSTAEVKIILMSA-TINIELFHTYF 370 (1417)
Q Consensus 317 L~~~~~VIlDEaH-ER~l~~d~ll~llk~l~~~r~~~qvIlmSA-Tln~~~~~~~f 370 (1417)
..+.+++|+||++ --.++..+...+.+.+.. ....+|+.|- |-+.+.+..+.
T Consensus 97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~ 150 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIR 150 (178)
T ss_dssp HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHH
T ss_pred ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHH
Confidence 4567899999976 123444455555555433 2333555553 44544444443
No 265
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=72.55 E-value=1.2 Score=50.25 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.3
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..++++.|.||.||||||.+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 357889999999999999964
No 266
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=72.53 E-value=1.6 Score=46.23 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=16.8
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+..++|+|+.||||||+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 35678999999999999854
No 267
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=72.50 E-value=2 Score=45.60 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=15.0
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
+.++.|.|++||||||.
T Consensus 22 ~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp SEEEEEEECTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45899999999999984
No 268
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=72.48 E-value=2 Score=49.11 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcchhH
Q psy3476 44 KQEIIDTVLKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 44 q~~il~~i~~~~~~iI~a~TGsGKTt 69 (1417)
.+.+...+..+..+++.||+|+|||+
T Consensus 36 ~~~l~~~l~~~~~vll~G~pGtGKT~ 61 (331)
T 2r44_A 36 INRLLIGICTGGHILLEGVPGLAKTL 61 (331)
T ss_dssp HHHHHHHHHHTCCEEEESCCCHHHHH
T ss_pred HHHHHHHHHcCCeEEEECCCCCcHHH
Confidence 34555666778899999999999996
No 269
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=72.46 E-value=3 Score=44.46 Aligned_cols=34 Identities=41% Similarity=0.574 Sum_probs=21.9
Q ss_pred eEEEEcCCCcchhHHHH---HHHHHcCCCcEEEecch
Q psy3476 56 VVIIAGDTGCGKSTQIP---QYLVQAGFQRIACTQPR 89 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ip---q~ile~~~~~i~~tqPr 89 (1417)
.+++.|.-|||||||+- +++-+.|..-+..-.|.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~ 38 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG 38 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 36789999999999853 34444454444444453
No 270
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=72.44 E-value=4.2 Score=45.48 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=15.4
Q ss_pred cCCeEEEEcCCCcchhHH
Q psy3476 53 KERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ 70 (1417)
....+++.||+|+|||+.
T Consensus 49 ~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 356889999999999973
No 271
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=72.38 E-value=3 Score=47.37 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=24.0
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
++.+.+..+++++|.|+.|+|||+.+-++.-+
T Consensus 23 ~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 23 KLEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 44455555689999999999999876655543
No 272
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=72.37 E-value=2.3 Score=49.14 Aligned_cols=16 Identities=44% Similarity=0.592 Sum_probs=14.3
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
++-|.||+||||||.+
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 8899999999999853
No 273
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=72.33 E-value=2 Score=44.90 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=16.1
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+.+++|+|++||||||+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4568999999999999843
No 274
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=72.31 E-value=1.2 Score=50.93 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=16.5
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+.++.+.||+||||||.+-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 34588999999999999643
No 275
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=72.11 E-value=3.9 Score=45.48 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=16.0
Q ss_pred hcCCeEEEEcCCCcchhHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ 70 (1417)
.....++|.||+|||||+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCSEEEEESSSSSSHHHH
T ss_pred CCCCeEEEECCCCCcHHHH
Confidence 3566899999999999973
No 276
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=72.01 E-value=2.2 Score=45.83 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
...++|.|+.||||||+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999854
No 277
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=71.95 E-value=2.4 Score=45.48 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+..++|.|+.||||||+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999854
No 278
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=71.91 E-value=2.1 Score=49.50 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=13.7
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
.+++|+|||||||||
T Consensus 6 ~~i~i~GptGsGKTt 20 (323)
T 3crm_A 6 PAIFLMGPTAAGKTD 20 (323)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 478999999999997
No 279
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=71.88 E-value=2.7 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=17.5
Q ss_pred cCCeEEEEcCCCcchhHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQY 74 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ 74 (1417)
....++|.||+|+|||+.+-.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~ 64 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLV 64 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHH
Confidence 4568999999999999865433
No 280
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=71.86 E-value=1.3 Score=49.15 Aligned_cols=47 Identities=21% Similarity=0.100 Sum_probs=27.7
Q ss_pred EEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 322 VLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 322 ~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
++++||-- -.+|......+...+......-+.|+++ |=+.+.+..+.
T Consensus 154 lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tviiv-tHd~~~~~~~~ 200 (249)
T 2qi9_C 154 LLLLDEPM-NSLDVAQQSALDKILSALSQQGLAIVMS-SHDLNHTLRHA 200 (249)
T ss_dssp EEEESSTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEE-CSCHHHHHHHC
T ss_pred EEEEECCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEE-eCCHHHHHHhC
Confidence 99999997 5677665555555554432222344443 45666555554
No 281
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=71.84 E-value=2.7 Score=44.35 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=14.8
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
..++|+|+.||||||+.
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999854
No 282
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=71.83 E-value=2.6 Score=43.05 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.2
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
-++++|.|+.||||||+.
T Consensus 7 ~~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp -CEEEEESCTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 368999999999999854
No 283
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=71.79 E-value=4.3 Score=47.00 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCcchhHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQY 74 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~ 74 (1417)
...++|.||+|+|||+.+-.+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l 65 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYI 65 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 457999999999999865433
No 284
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=71.71 E-value=1.3 Score=49.25 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=32.0
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCC-CcEEEEccCCCHHHHHHHh
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-VKIILMSATINIELFHTYF 370 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~-~qvIlmSATln~~~~~~~f 370 (1417)
.+.+-+++++||-- -.+|......+...+.....+ -+.|+++ |=+.+.+..+.
T Consensus 143 L~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~~g~tvi~v-tHd~~~~~~~~ 196 (253)
T 2nq2_C 143 IASECKLILLDEPT-SALDLANQDIVLSLLIDLAQSQNMTVVFT-THQPNQVVAIA 196 (253)
T ss_dssp HHTTCSEEEESSSS-TTSCHHHHHHHHHHHHHHHHTSCCEEEEE-ESCHHHHHHHC
T ss_pred HHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhC
Confidence 45677899999997 567766665555555443222 2344443 45666655555
No 285
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=71.69 E-value=2.3 Score=44.77 Aligned_cols=19 Identities=37% Similarity=0.674 Sum_probs=15.6
Q ss_pred CeEEEEcCCCcchhHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq 73 (1417)
..++|+|+.||||||+.-.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~ 34 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4789999999999986533
No 286
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=71.64 E-value=1.6 Score=45.58 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=16.1
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+.+++++|+.||||||+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4568999999999999853
No 287
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=71.61 E-value=2.1 Score=49.76 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=13.7
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
.+++|+|||||||||
T Consensus 8 ~lI~I~GptgSGKTt 22 (340)
T 3d3q_A 8 FLIVIVGPTASGKTE 22 (340)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred ceEEEECCCcCcHHH
Confidence 478999999999997
No 288
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=71.60 E-value=1.3 Score=47.05 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=14.1
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
.++|+|+.||||||++
T Consensus 2 ~I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5789999999999854
No 289
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=71.54 E-value=1.7 Score=49.77 Aligned_cols=19 Identities=53% Similarity=0.851 Sum_probs=16.2
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+.++.|.||+||||||.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSSEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3568999999999999964
No 290
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=71.43 E-value=5.3 Score=43.58 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=15.1
Q ss_pred cCCeEEEEcCCCcchhHH
Q psy3476 53 KERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ 70 (1417)
....+++.||+|||||+.
T Consensus 38 ~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCCEEEEESCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 356789999999999973
No 291
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=71.26 E-value=3.1 Score=43.04 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=14.1
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
+++|+|+.||||||+.
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999964
No 292
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=71.25 E-value=1.7 Score=49.85 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 45 QEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 45 ~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
++++.-+..+..++|.|++|+|||+.+.+++..
T Consensus 59 D~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 59 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 344444667889999999999999876665543
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=71.23 E-value=2.1 Score=49.09 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.3
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..++.+.|.||+||||||.+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHH
Confidence 357899999999999999964
No 294
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=71.09 E-value=2.5 Score=45.20 Aligned_cols=18 Identities=33% Similarity=0.411 Sum_probs=14.9
Q ss_pred eEEEEcCCCcchhHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq 73 (1417)
.++|.|+.||||||+.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999996543
No 295
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=71.00 E-value=2.3 Score=43.93 Aligned_cols=17 Identities=47% Similarity=0.741 Sum_probs=14.7
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
.+++|+|+.||||||+.
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47899999999999854
No 296
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=70.83 E-value=1.8 Score=45.93 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
++.+.|.|++||||||.+
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 457899999999999964
No 297
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=70.63 E-value=3 Score=45.66 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=14.7
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
...+..+++.|+.|||||||+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~ 42 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHL 42 (227)
T ss_dssp -CCCCEEEEECCC---CHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHH
Confidence 356789999999999999975
No 298
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=70.42 E-value=6.5 Score=44.68 Aligned_cols=19 Identities=32% Similarity=0.744 Sum_probs=16.2
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+++++++|++|+||||.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3569999999999999854
No 299
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=70.40 E-value=1.2 Score=50.87 Aligned_cols=60 Identities=7% Similarity=0.066 Sum_probs=46.4
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn 488 (1417)
..+..+||.+|++.-+.++++.+.++... .+..+..++|+....++...+. ..+|+|+|.
T Consensus 72 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~ 131 (367)
T 1hv8_A 72 NNGIEAIILTPTRELAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKALK-----NANIVVGTP 131 (367)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHHH-----TCSEEEECH
T ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHhCC-CCceEEEEECCcchHHHHhhcC-----CCCEEEecH
Confidence 34668999999999999999998876532 4577889999988776655554 357999995
No 300
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=70.37 E-value=2.6 Score=43.40 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=12.7
Q ss_pred CCeEEEEcCCCcchhHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq 73 (1417)
..+++|+|+.||||||+.-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56889999999999996543
No 301
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=70.37 E-value=1.9 Score=51.23 Aligned_cols=15 Identities=60% Similarity=1.030 Sum_probs=13.6
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
++++|+||||||||+
T Consensus 3 ~~i~i~GptgsGKtt 17 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQ 17 (409)
T ss_dssp EEEEEEECSSSSHHH
T ss_pred cEEEEECcchhhHHH
Confidence 478999999999997
No 302
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.20 E-value=3.6 Score=47.38 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=20.0
Q ss_pred HHHHHHhcCCe--EEEEcCCCcchhHHH
Q psy3476 46 EIIDTVLKERV--VIIAGDTGCGKSTQI 71 (1417)
Q Consensus 46 ~il~~i~~~~~--~iI~a~TGsGKTt~i 71 (1417)
.+...+.+++. +++.||.|+||||.+
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHH
Confidence 44455667766 999999999999843
No 303
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=70.12 E-value=1.7 Score=45.47 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.6
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
+.+.|+|++||||||.+
T Consensus 3 ~~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLI 19 (171)
T ss_dssp CEEEEEESCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46789999999999864
No 304
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=69.88 E-value=2.8 Score=46.07 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=27.2
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHHcCC--CcEEEecch
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQAGF--QRIACTQPR 89 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile~~~--~~i~~tqPr 89 (1417)
.+.+.+++|+.||||||.+.+.+..... .++++.+|.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~ 56 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 56 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 4779999999999999987776654322 356666664
No 305
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=69.86 E-value=1.5 Score=51.32 Aligned_cols=21 Identities=33% Similarity=0.743 Sum_probs=18.1
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+.++.|.||.||||||.+
T Consensus 27 i~~Ge~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLL 47 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHH
Confidence 357889999999999999954
No 306
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=69.85 E-value=1.1 Score=52.36 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=46.0
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn 488 (1417)
..+.+||.+|+++-+.++++.+..+... .+..+..++|+.....+...+ ..+...|+|+|.
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~T~ 167 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDY-MGASCHACIGGTNVRAEVQKL---QMEAPHIIVGTP 167 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGG-SCCCEEECCCCTTHHHHHHHH---TTTCCSEEEECH
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcc-cCceEEEEECCcchHHHHHHH---hcCCCCEEEECH
Confidence 4678999999999999999998876533 466788888888766554433 335568999995
No 307
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=69.79 E-value=4.2 Score=45.58 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=15.1
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
...++|.||+|||||+.
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 57899999999999974
No 308
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=69.73 E-value=5.6 Score=45.53 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCcchhHHHHHHH---HHcCCCc-EEEecchHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYL---VQAGFQR-IACTQPRRIACI 94 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~i---le~~~~~-i~~tqPrr~aa~ 94 (1417)
+++++|+|++||||||.+.... ...+..- ++-.-++|.++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~ 148 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAI 148 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHH
Confidence 3478999999999999754332 2333222 333346666554
No 309
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=69.72 E-value=1.8 Score=47.32 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=16.6
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..++|.|+.|||||||+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 5678999999999999864
No 310
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=69.69 E-value=2.7 Score=42.85 Aligned_cols=17 Identities=29% Similarity=0.642 Sum_probs=14.5
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
.+++|+|+.||||||+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999843
No 311
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=69.67 E-value=1.7 Score=47.64 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=17.2
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+.++-|.||.||||||.+
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHH
Confidence 3456778999999999999854
No 312
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=69.55 E-value=1.6 Score=49.65 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=28.8
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHh-ccCCCCcEEEEccCCCHHHH
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLL-HSTAEVKIILMSATINIELF 366 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~-~~r~~~qvIlmSATln~~~~ 366 (1417)
.+.+-+++++||-- -.++......+.+.+. ....+ +.|+++ |=+.+.+
T Consensus 174 L~~~p~lllLDEPt-s~LD~~~~~~i~~~ll~~~~~~-~tviiv-tHd~~~~ 222 (290)
T 2bbs_A 174 VYKDADLYLLDSPF-GYLDVLTEKEIFESCVCKLMAN-KTRILV-TSKMEHL 222 (290)
T ss_dssp HHSCCSEEEEESTT-TTCCHHHHHHHHHHCCCCCTTT-SEEEEE-CCCHHHH
T ss_pred HHCCCCEEEEECCc-ccCCHHHHHHHHHHHHHHhhCC-CEEEEE-ecCHHHH
Confidence 45677899999997 5677666666665432 33333 345554 4455443
No 313
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=69.33 E-value=1.4 Score=53.77 Aligned_cols=102 Identities=12% Similarity=0.049 Sum_probs=70.9
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc----C---CCcEEEecchHHHHHHHHHHHHHHHccccCC
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA----G---FQRIACTQPRRIACISLSKRVAYETLSQYSN 110 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~----~---~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~ 110 (1417)
+..+.+|.++++.+.+++++++++|||||||.++..++++. . ..++++..|++..+.+.++.+..... ..|.
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~ 84 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE-RQGY 84 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG-GGTC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc-ccCc
Confidence 45678999999999999999999999999999877666543 1 45789999999999998887766543 2244
Q ss_pred eEEEEEeeccc------ccCCccEEEEccchhHHhh
Q psy3476 111 LVGYQIRFEKH------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 111 ~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l 140 (1417)
.|+........ ......|+++|+|.|.+.+
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~ 120 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSF 120 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHH
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHH
Confidence 44432221111 1123568888888877654
No 314
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=69.09 E-value=4 Score=47.14 Aligned_cols=65 Identities=23% Similarity=0.185 Sum_probs=46.2
Q ss_pred CCCCCCC--CcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCChhHHHH
Q psy3476 612 GAIDSKE--RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETA 678 (1417)
Q Consensus 612 GaId~~~--~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~ 678 (1417)
|+++.++ ..|++|+++|.++|++.+++.+.....-.. ....+..++|...+|.....++.+....
T Consensus 1 ~~~~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~--~~~~lL~ils~a~Ef~~i~vR~~E~~~l 67 (328)
T 3im1_A 1 GAMEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTS--TLKNMLYVLSTAVEFESVPLRKGDRALL 67 (328)
T ss_dssp ---CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTC--CHHHHHHHHHTCGGGGGSCCCTTHHHHH
T ss_pred CCccCCCCccCCchhHHHHHHCCCHHHHHHHHHHhcccC--CHHHHHHHhccHHHHHhcccCcchHHHH
Confidence 5666655 479999999999999999999987654332 2345677888889998876666554433
No 315
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=69.06 E-value=2.5 Score=48.82 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=14.5
Q ss_pred CeEEEEcCCCcchhHH
Q psy3476 55 RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ 70 (1417)
+.+++.||+||||||.
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6899999999999983
No 316
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=69.01 E-value=3.2 Score=42.95 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=14.5
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
.+++|+|+.||||||+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999843
No 317
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=68.91 E-value=4.7 Score=46.06 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=14.3
Q ss_pred CeEEEEcCCCcchhHH
Q psy3476 55 RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ 70 (1417)
..++|.||+|+|||+.
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5899999999999974
No 318
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=68.91 E-value=4.2 Score=44.78 Aligned_cols=19 Identities=42% Similarity=0.732 Sum_probs=16.9
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+++.|+.|||||||+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~ 44 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAI 44 (236)
T ss_dssp CCCEEEEEESTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5779999999999999975
No 319
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=68.82 E-value=2.1 Score=51.16 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=28.8
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIA 92 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~a 92 (1417)
.+.+++|.|+||||||+.+...+... ...+++|.-|....
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~ 93 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDM 93 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCch
Confidence 46789999999999999764443322 22478888888655
No 320
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=68.74 E-value=5.3 Score=45.23 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=16.4
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..++.+++.||+|||||+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHH
T ss_pred CCCceEEEECCCCcCHHHHH
Confidence 34678999999999999743
No 321
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=68.54 E-value=6.1 Score=45.86 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=15.3
Q ss_pred cCCeEEEEcCCCcchhHH
Q psy3476 53 KERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ 70 (1417)
....+++.||+|||||+.
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 456899999999999973
No 322
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=68.41 E-value=3.4 Score=45.77 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
...++|+|+.||||||+.
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 457899999999999854
No 323
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=68.30 E-value=1.7 Score=50.82 Aligned_cols=54 Identities=13% Similarity=0.027 Sum_probs=30.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCC-CcEEEEccCCCHHHHHHHh
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-VKIILMSATINIELFHTYF 370 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~-~qvIlmSATln~~~~~~~f 370 (1417)
..+.+-+++++||-= -.+|......+...+...... -..+++ .|=+.+....+.
T Consensus 159 AL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~-vTHd~~~a~~~a 213 (355)
T 1z47_A 159 ALAPRPQVLLFDEPF-AAIDTQIRRELRTFVRQVHDEMGVTSVF-VTHDQEEALEVA 213 (355)
T ss_dssp HHTTCCSEEEEESTT-CCSSHHHHHHHHHHHHHHHHHHTCEEEE-ECSCHHHHHHHC
T ss_pred HHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEE-ECCCHHHHHHhC
Confidence 346678899999986 566665555555444433221 123444 355666655554
No 324
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.28 E-value=3.2 Score=47.53 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=20.0
Q ss_pred HHHHHHHhcC--CeEEEEcCCCcchhHH
Q psy3476 45 QEIIDTVLKE--RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 45 ~~il~~i~~~--~~~iI~a~TGsGKTt~ 70 (1417)
+.+...+..+ ..+++.||+|+|||+.
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTST 74 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHH
Confidence 4555666666 5699999999999973
No 325
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=68.27 E-value=1.8 Score=51.25 Aligned_cols=20 Identities=40% Similarity=0.797 Sum_probs=17.8
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+.++.|.||.||||||.+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLL 46 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEcCCCchHHHHH
Confidence 57889999999999999964
No 326
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=68.24 E-value=2.3 Score=47.05 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=16.9
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+.++.|.||+||||||..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 35678999999999999854
No 327
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=68.10 E-value=4.3 Score=46.91 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=16.8
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+.++.+.||+||||||.+-
T Consensus 128 ~g~vi~lvG~nGaGKTTll~ 147 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIA 147 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35689999999999999754
No 328
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=68.09 E-value=2.7 Score=45.40 Aligned_cols=17 Identities=41% Similarity=0.559 Sum_probs=14.5
Q ss_pred eEEEEcCCCcchhHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ip 72 (1417)
.++|.|+.||||||+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999653
No 329
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=68.02 E-value=5.7 Score=43.55 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=14.6
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
.+.++|.||+|||||+.
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 45689999999999973
No 330
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=68.02 E-value=4.3 Score=46.93 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=17.3
Q ss_pred eEEEEcCCCcchhHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~il 76 (1417)
.++|.||+|+|||+.+-.+.-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 899999999999997655443
No 331
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=67.87 E-value=21 Score=43.49 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=24.8
Q ss_pred cCCeEEEEcCCCcchhHHHHHH--HHHcCCCcEEE--ecchHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQY--LVQAGFQRIAC--TQPRRIA 92 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~--ile~~~~~i~~--tqPrr~a 92 (1417)
.+.++.|.|++||||||.+-.. ++.....+|.+ ..+.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~a 335 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA 335 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchh
Confidence 3568999999999999975432 23222345555 3344543
No 332
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=67.84 E-value=2.9 Score=45.56 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=25.6
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecch
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPR 89 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPr 89 (1417)
..+.+.+|+|+.||||||.+.+.+... ...++++.+|.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~ 65 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPA 65 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 457899999999999999766554332 12345555554
No 333
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=67.76 E-value=3.5 Score=48.52 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=26.8
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRR 90 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr 90 (1417)
.+.+++|.|+|||||||.+-..+... .-.+|++.-|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~ 73 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPER 73 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57789999999999999765444332 124677777764
No 334
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=67.70 E-value=1.8 Score=47.78 Aligned_cols=53 Identities=15% Similarity=0.050 Sum_probs=30.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCC--CCcEEEEccCCCHHHHHHHh
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA--EVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~--~~qvIlmSATln~~~~~~~f 370 (1417)
..+.+-+++++||-- -.+|......+...+..... +.-+|+. |=+.+.+..+.
T Consensus 140 al~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l~~~~g~tvi~v--tHd~~~~~~~~ 194 (240)
T 2onk_A 140 ALVIQPRLLLLDEPL-SAVDLKTKGVLMEELRFVQREFDVPILHV--THDLIEAAMLA 194 (240)
T ss_dssp HHTTCCSSBEEESTT-SSCCHHHHHHHHHHHHHHHHHHTCCEEEE--ESCHHHHHHHC
T ss_pred HHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEE--eCCHHHHHHhC
Confidence 346678899999997 56676555555554444321 3334443 44555555554
No 335
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=67.69 E-value=0.48 Score=60.30 Aligned_cols=54 Identities=22% Similarity=0.216 Sum_probs=44.4
Q ss_pred hhcccccccchHHHHHHHhhhccccchhHHHHHHhhccchhhhHhhhhccccccc
Q psy3476 1116 VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIEL 1170 (1417)
Q Consensus 1116 ~~~~~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~~~lk~ilmsat~~~~~ 1170 (1417)
+..+..++.+.++||||+|+.....+..+++++..+. +++.++++||||.....
T Consensus 324 l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~i 377 (673)
T 2wv9_A 324 LMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGTS 377 (673)
T ss_dssp HHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC
T ss_pred HhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChhh
Confidence 4455678999999999999997777788888888764 36789999999997654
No 336
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=67.52 E-value=3.5 Score=41.87 Aligned_cols=16 Identities=31% Similarity=0.221 Sum_probs=13.9
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
.++|+|+.||||||+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999854
No 337
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=67.41 E-value=1.9 Score=50.60 Aligned_cols=53 Identities=15% Similarity=0.111 Sum_probs=30.5
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCC--CCcEEEEccCCCHHHHHHHh
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA--EVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~--~~qvIlmSATln~~~~~~~f 370 (1417)
..+.+-+++++||-= -.+|......+...+..... +. .++++ |=+.+....+.
T Consensus 147 AL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~-tvi~v-THd~~~~~~~a 201 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPL-SNLDANLRMIMRAEIKHLQQELGI-TSVYV-THDQAEAMTMA 201 (359)
T ss_dssp HHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHHCC-EEEEE-ESCHHHHHHHC
T ss_pred HHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhcCC-EEEEE-cCCHHHHHHhC
Confidence 346678899999997 56666555555544443321 23 34443 45655555544
No 338
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=67.39 E-value=2.1 Score=45.79 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=15.3
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+.++.|+|+.||||||+.
T Consensus 4 ~~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVA 21 (218)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 357899999999999854
No 339
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=67.30 E-value=1.9 Score=50.65 Aligned_cols=53 Identities=19% Similarity=0.105 Sum_probs=30.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCC--CCcEEEEccCCCHHHHHHHh
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA--EVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~--~~qvIlmSATln~~~~~~~f 370 (1417)
..+.+-+++++||-= -.+|......+...+..... +. .++++ |=+.+....+.
T Consensus 147 AL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~-tvi~v-THd~~~a~~~a 201 (362)
T 2it1_A 147 ALVKEPEVLLLDEPL-SNLDALLRLEVRAELKRLQKELGI-TTVYV-THDQAEALAMA 201 (362)
T ss_dssp HHTTCCSEEEEESGG-GGSCHHHHHHHHHHHHHHHHHHTC-EEEEE-ESCHHHHHHHC
T ss_pred HHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHHhCCC-EEEEE-CCCHHHHHHhC
Confidence 346678899999997 56666555555554444321 33 34443 55655555554
No 340
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=67.29 E-value=1.8 Score=50.85 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=16.1
Q ss_pred CCeEEEEcCCCcchhHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ip 72 (1417)
+.++.|.||+||||||.+-
T Consensus 157 g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4588999999999999643
No 341
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=67.14 E-value=1.8 Score=49.74 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=17.5
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+.++.|.||+||||||.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHH
Confidence 355678999999999999853
No 342
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=67.13 E-value=1.9 Score=51.17 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.4
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+..+.|.||+||||||.+
T Consensus 44 i~~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHH
Confidence 357889999999999999965
No 343
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=67.08 E-value=1.7 Score=50.70 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=30.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCC--CCcEEEEccCCCHHHHHHHh
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA--EVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~--~~qvIlmSATln~~~~~~~f 370 (1417)
..+.+-+++++||-= -.+|......+...+..... +.-+|+. |=+.+....+.
T Consensus 141 aL~~~P~lLLLDEP~-s~LD~~~~~~l~~~l~~l~~~~g~tii~v--THd~~~~~~~a 195 (348)
T 3d31_A 141 ALVTNPKILLLDEPL-SALDPRTQENAREMLSVLHKKNKLTVLHI--THDQTEARIMA 195 (348)
T ss_dssp HTTSCCSEEEEESSS-TTSCHHHHHHHHHHHHHHHHHTTCEEEEE--ESCHHHHHHHC
T ss_pred HHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEE--eCCHHHHHHhC
Confidence 456778999999987 56666555555554444322 3333333 45655555544
No 344
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=67.00 E-value=3.1 Score=47.45 Aligned_cols=18 Identities=39% Similarity=0.684 Sum_probs=15.9
Q ss_pred hcCCeEEEEcCCCcchhH
Q psy3476 52 LKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt 69 (1417)
..+..++|.||||+|||+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~ 40 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKEL 40 (304)
T ss_dssp STTSCEEEESCTTSCHHH
T ss_pred CCCCcEEEECCCCchHHH
Confidence 456789999999999996
No 345
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=66.98 E-value=3.3 Score=44.38 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCcchhHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ip 72 (1417)
...++|.|+.||||||+.-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468999999999998643
No 346
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=66.97 E-value=3.5 Score=44.76 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=16.0
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
....+++.|++||||||+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3468899999999999854
No 347
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=66.84 E-value=3.1 Score=43.54 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.2
Q ss_pred CeEEEEcCCCcchhHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ip 72 (1417)
.++.|+|+.||||||.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~ 22 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLME 22 (169)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 578999999999998543
No 348
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=66.82 E-value=0.63 Score=56.08 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=42.3
Q ss_pred hhcccccccchHHHHHHHhhhccccchhHHHHHHhhccchhhhHhhhhcccccc
Q psy3476 1116 VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIE 1169 (1417)
Q Consensus 1116 ~~~~~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~~~lk~ilmsat~~~~ 1169 (1417)
+.++..++.+.++||||+|+.....+..++++..... +++.++++||||....
T Consensus 91 ~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~ 143 (440)
T 1yks_A 91 MLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGT 143 (440)
T ss_dssp HTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC
T ss_pred hhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCch
Confidence 5555668899999999999986666677888877664 4678999999999654
No 349
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=66.81 E-value=4.2 Score=45.09 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=14.1
Q ss_pred CeEEEEcCCCcchhHH
Q psy3476 55 RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ 70 (1417)
..+++.||+|+|||+.
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4789999999999973
No 350
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=66.79 E-value=2.4 Score=44.72 Aligned_cols=16 Identities=44% Similarity=0.802 Sum_probs=13.8
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
.+.|.|+.||||||+.
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5789999999999843
No 351
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=66.69 E-value=5.4 Score=45.09 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=14.8
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
...++|.||+|+|||+.
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46889999999999973
No 352
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=66.36 E-value=4.9 Score=43.60 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=17.3
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+..+++.|+.|||||||+-
T Consensus 4 ~g~~i~~eG~~g~GKst~~~ 23 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCN 23 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 57789999999999999753
No 353
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=66.33 E-value=2.6 Score=48.50 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=21.0
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
..+.+++|.|++|||||+.+.+++..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 45689999999999999876665554
No 354
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=66.32 E-value=1.8 Score=50.42 Aligned_cols=75 Identities=9% Similarity=0.103 Sum_probs=52.2
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc-----hhhc-cCCcC
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN-----IAET-SITID 497 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn-----Iae~-GIdIP 497 (1417)
.+..+||.+|++.-+...++.+..+... .+..+..++|+....++.... .+...|+|+|. .+.. ...+.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~ 162 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKH-CGISCMVTTGGTNLRDDILRL----NETVHILVGTPGRVLDLASRKVADLS 162 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcc-cCceEEEEeCCcchHHHHHHh----cCCCCEEEEchHHHHHHHHhCCcccc
Confidence 3568999999999999999988876533 357788899998876654433 23467999995 2222 34566
Q ss_pred CeEEEE
Q psy3476 498 GIRFVV 503 (1417)
Q Consensus 498 ~V~~VI 503 (1417)
++.+||
T Consensus 163 ~~~~vI 168 (400)
T 1s2m_A 163 DCSLFI 168 (400)
T ss_dssp TCCEEE
T ss_pred cCCEEE
Confidence 665544
No 355
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=66.25 E-value=2.3 Score=49.90 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=15.0
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
..++|+|||||||||.+
T Consensus 24 g~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 37889999999999975
No 356
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=66.25 E-value=3.2 Score=43.52 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=15.9
Q ss_pred CCeEEEEcCCCcchhHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ip 72 (1417)
-+.++|+|+.||||||.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~ 24 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLK 24 (174)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHH
Confidence 3678999999999998543
No 357
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=66.23 E-value=2.2 Score=50.11 Aligned_cols=18 Identities=39% Similarity=0.708 Sum_probs=15.8
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
....+|+|+||+|||+.+
T Consensus 25 ~gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIF 42 (371)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468899999999999874
No 358
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=66.21 E-value=2.4 Score=44.78 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=14.0
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
++.|.|+.||||||..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999954
No 359
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=66.09 E-value=2.3 Score=45.72 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.7
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
++.+++.|.-|||||||+
T Consensus 2 ~kFI~~EG~dGsGKsTq~ 19 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVI 19 (205)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 357899999999999975
No 360
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=66.04 E-value=1.7 Score=52.89 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=73.8
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc----C---CCcEEEecchHHHHHHHHHHHHHHHccccCC
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA----G---FQRIACTQPRRIACISLSKRVAYETLSQYSN 110 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~----~---~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~ 110 (1417)
+..+.+|.++++.+.+++++++++|||||||.++..++++. . ..++++..|++.++.+..+.+..... ..|.
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~ 81 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFE-RLGY 81 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH-TTTC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhc-cCCc
Confidence 45678999999999999999999999999999876666543 2 45799999999999998887765442 2344
Q ss_pred eEEEEEeeccccc------CCccEEEEccchhHHhhc
Q psy3476 111 LVGYQIRFEKHRR------EKTKIVFITEGLLLRQDS 141 (1417)
Q Consensus 111 ~vGy~ir~e~~~~------~~t~I~~~T~g~llr~l~ 141 (1417)
.++.......... ....|+++|+|.|.+.+.
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~ 118 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLN 118 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHH
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHh
Confidence 5554332221111 236788888888776543
No 361
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=65.97 E-value=2.4 Score=44.46 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=15.1
Q ss_pred CeEEEEcCCCcchhHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ip 72 (1417)
.++.|+|++||||||+.-
T Consensus 9 ~~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478899999999998543
No 362
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=65.90 E-value=5.6 Score=45.15 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=19.4
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
+.. ++++|.||.|+|||+.+-++.-
T Consensus 28 l~~-~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 28 LRA-PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp TCS-SEEEEEESTTSSHHHHHHHHHH
T ss_pred hcC-CcEEEECCCCCCHHHHHHHHHH
Confidence 444 7999999999999986655443
No 363
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=65.83 E-value=2.1 Score=50.45 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=30.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCC--CCcEEEEccCCCHHHHHHHh
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA--EVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~--~~qvIlmSATln~~~~~~~f 370 (1417)
..+.+-+++++||-- -.+|......+...+..... .. .++++ |=+.+....+.
T Consensus 155 AL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~-tvi~v-THd~~~a~~~a 209 (372)
T 1v43_A 155 AIVVEPDVLLMDEPL-SNLDAKLRVAMRAEIKKLQQKLKV-TTIYV-THDQVEAMTMG 209 (372)
T ss_dssp HHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHHTC-EEEEE-ESCHHHHHHHC
T ss_pred HHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhCCC-EEEEE-eCCHHHHHHhC
Confidence 345678899999997 56666555555554444322 23 34443 55655555554
No 364
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=65.81 E-value=2.1 Score=50.49 Aligned_cols=52 Identities=17% Similarity=0.092 Sum_probs=29.9
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCC--CCcEEEEccCCCHHHHHHHh
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA--EVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~--~~qvIlmSATln~~~~~~~f 370 (1417)
.+.+-+++++||-- -.+|......+...+..... +.-+|+. |=+.+....+.
T Consensus 154 L~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~v--THd~~~a~~~a 207 (372)
T 1g29_1 154 IVRKPQVFLMDEPL-SNLDAKLRVRMRAELKKLQRQLGVTTIYV--THDQVEAMTMG 207 (372)
T ss_dssp HHTCCSEEEEECTT-TTSCHHHHHHHHHHHHHHHHHHTCEEEEE--ESCHHHHHHHC
T ss_pred HhcCCCEEEECCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEE--CCCHHHHHHhC
Confidence 45677899999987 56666555555544443321 3333433 45655555554
No 365
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=65.76 E-value=2.1 Score=48.03 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=24.2
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCC
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA 350 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~ 350 (1417)
.+.+-+++++||-- -.++......+...+.....
T Consensus 143 L~~~p~lllLDEPt-s~LD~~~~~~l~~~L~~~~~ 176 (263)
T 2pjz_A 143 LASQPEIVGLDEPF-ENVDAARRHVISRYIKEYGK 176 (263)
T ss_dssp HHTCCSEEEEECTT-TTCCHHHHHHHHHHHHHSCS
T ss_pred HHhCCCEEEEECCc-cccCHHHHHHHHHHHHHhcC
Confidence 45677899999997 66777666666666665543
No 366
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=65.71 E-value=1.5 Score=45.01 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=22.7
Q ss_pred hhhhHHHhhhcccccc-CCCcccccccHHHHh
Q psy3476 795 EEEEEEEEGERLESRT-GPGVCYRLYSEEQYS 825 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~-~pG~CyRLyt~~~~~ 825 (1417)
.+.+.-.||.||+||. ++|.||.++++.+..
T Consensus 109 ~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 109 ANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 140 (165)
T ss_dssp SSGGGGGGSSCSCC-----CEEEEEEETTTHH
T ss_pred CCHHHHHHHhcccccCCCCceEEEEEcchHHH
Confidence 3567789999999999 589999999986654
No 367
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=65.68 E-value=3.7 Score=50.32 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcchhH
Q psy3476 44 KQEIIDTVLKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 44 q~~il~~i~~~~~~iI~a~TGsGKTt 69 (1417)
...++.++..+..+++.||+|+|||+
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~ 56 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSL 56 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHH
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHH
Confidence 34566677788999999999999996
No 368
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=65.44 E-value=4.8 Score=45.30 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=23.6
Q ss_pred CCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 318 SSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
.+..+|||||+| .+..+....+++.+.....+..+|+.+
T Consensus 109 ~~~~vliiDe~~--~l~~~~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEAD--ALTQDAQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGG--GSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCC--cCCHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 356799999999 334444555555554444555555543
No 369
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=65.40 E-value=2.7 Score=48.58 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCcchhHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
.+.+++|.||+|||||+...++.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 45678999999999998655543
No 370
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=65.38 E-value=2.8 Score=47.12 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.7
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
..+++.||+|||||+
T Consensus 48 ~~~ll~G~~GtGKt~ 62 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTE 62 (311)
T ss_dssp EEEEEESCSSSSHHH
T ss_pred eEEEEECCCCcCHHH
Confidence 478999999999996
No 371
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=65.29 E-value=4.6 Score=44.23 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=14.3
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
+-++|.||+||||||.+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34899999999999854
No 372
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=64.88 E-value=3.9 Score=48.80 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=19.6
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+-.......++.|.|++||||||.+=
T Consensus 61 ~L~~~~~~~~~valvG~nGaGKSTLln 87 (413)
T 1tq4_A 61 ALKEIDSSVLNVAVTGETGSGKSSFIN 87 (413)
T ss_dssp HHHHHHHCCEEEEEEECTTSSHHHHHH
T ss_pred hhhhcccCCeEEEEECCCCCcHHHHHH
Confidence 333344455599999999999999653
No 373
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=64.59 E-value=3.9 Score=42.01 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.8
Q ss_pred CeEEEEcCCCcchhHH
Q psy3476 55 RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ 70 (1417)
++++|.|+.||||||+
T Consensus 5 ~~i~i~G~~GsGKsTl 20 (175)
T 1via_A 5 KNIVFIGFMGSGKSTL 20 (175)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 3689999999999983
No 374
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=64.50 E-value=2.9 Score=48.77 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=20.4
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
+..+.+++|.|++||||||.+.+++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33578999999999999986655543
No 375
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=64.42 E-value=3.7 Score=47.23 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+..++|.||+|+|||+.+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999743
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=64.13 E-value=3.9 Score=45.07 Aligned_cols=18 Identities=28% Similarity=0.665 Sum_probs=15.2
Q ss_pred cCCeEEEEcCCCcchhHH
Q psy3476 53 KERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ 70 (1417)
....++++|+.||||||+
T Consensus 31 ~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp SCEEEEEESCGGGTTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345889999999999984
No 377
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=64.13 E-value=2.9 Score=51.49 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=22.5
Q ss_pred HHhcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
.+..+.++.|.||+||||||.+-++++
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll 61 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLY 61 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999998777643
No 378
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=64.11 E-value=1.8 Score=50.71 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=31.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCC--CCcEEEEccCCCHHHHHHHh
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA--EVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~--~~qvIlmSATln~~~~~~~f 370 (1417)
..+.+-+++++||-= -.+|......+...+..... ..-+|+. |=+.+....+.
T Consensus 154 aL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~v--THd~~~~~~~a 208 (353)
T 1oxx_K 154 ALVKDPSLLLLDEPF-SNLDARMRDSARALVKEVQSRLGVTLLVV--SHDPADIFAIA 208 (353)
T ss_dssp HHTTCCSEEEEESTT-TTSCGGGHHHHHHHHHHHHHHHCCEEEEE--ESCHHHHHHHC
T ss_pred HHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEE--eCCHHHHHHhC
Confidence 346678899999997 56776666555555544322 2333333 55655555554
No 379
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=64.09 E-value=2.7 Score=44.97 Aligned_cols=18 Identities=39% Similarity=0.720 Sum_probs=15.7
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
..+.+|.||+||||||.+
T Consensus 23 ~~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLL 40 (203)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEcCCCCCHHHHH
Confidence 468899999999999964
No 380
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=64.04 E-value=3.7 Score=43.97 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=19.9
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
.++..+|.|+.||||||-+.+.+.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~ 42 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVR 42 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999987766554
No 381
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=64.01 E-value=0.69 Score=58.56 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=48.3
Q ss_pred HHHhcCChhhHHhhcccccccchHHHHHHHhhhccccchhHHHHHHhhccchhhhHhhhhcccccc
Q psy3476 1104 EFRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIE 1169 (1417)
Q Consensus 1104 ~~~~~~~g~~l~~~~~~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~~~lk~ilmsat~~~~ 1169 (1417)
.+.+.+.|.++. ...-.++.+.++||||+|.+....+..+..+++.+...++..+++||||.+..
T Consensus 299 ~IlV~TPGrLl~-~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 299 PVTYSTYGKFLA-DGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS 363 (666)
T ss_dssp SEEEEEHHHHHH-TTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC
T ss_pred CEEEECcHHHHh-CCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcc
Confidence 344566666432 12234566999999999999888888888888888777776688899999763
No 382
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=64.00 E-value=2.8 Score=50.52 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=22.6
Q ss_pred HHHHHhcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
++.-+..++.++|.|++|+||||.+.+++.
T Consensus 196 ~~gGl~~G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 196 MTSGFQRSDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp HHSSBCTTCEEEEECCTTSCHHHHHHHHHH
T ss_pred hcCCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 333355678999999999999986665544
No 383
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=63.81 E-value=2.7 Score=47.74 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=14.7
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
+.++.|+|++||||||.
T Consensus 31 ~~ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFT 47 (290)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44788999999999984
No 384
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=63.79 E-value=8.2 Score=44.21 Aligned_cols=17 Identities=35% Similarity=0.474 Sum_probs=14.6
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
.+.+++.||+|||||+.
T Consensus 45 ~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CceEEEECCCCccHHHH
Confidence 36789999999999973
No 385
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=63.75 E-value=6.3 Score=45.85 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=15.7
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
..+.++|.||+|||||+.+
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3568999999999999743
No 386
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=63.53 E-value=5.4 Score=46.01 Aligned_cols=16 Identities=50% Similarity=0.856 Sum_probs=14.2
Q ss_pred CeEEEEcCCCcchhHH
Q psy3476 55 RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ 70 (1417)
+.+++.||+|+|||+.
T Consensus 71 ~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAI 86 (368)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4799999999999973
No 387
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=63.51 E-value=11 Score=50.74 Aligned_cols=78 Identities=9% Similarity=0.125 Sum_probs=65.1
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEec-chhhccCCcCCeEEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST-NIAETSITIDGIRFVV 503 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVAT-nIae~GIdIP~V~~VI 503 (1417)
+.+++|.+|++.-+.+.++.+.+.... .++.+..+++..+..++..+.+....|...|+|+| ..+...+.+.++.+||
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~-~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFAN-WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTT-TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhc-CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 457999999999999999888765432 35678999999999999999999999999999999 4566668888888766
No 388
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=63.49 E-value=2.5 Score=49.69 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=30.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCC--CCcEEEEccCCCHHHHHHHh
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA--EVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~--~~qvIlmSATln~~~~~~~f 370 (1417)
....+-+++++||.= -.++......++..+..... ..-+|+. |=+.+....+.
T Consensus 177 AL~~~P~lLLlDEPT-s~LD~~~~~~i~~lL~~l~~~~g~Tii~v--THdl~~~~~~a 231 (366)
T 3tui_C 177 ALASNPKVLLCDQAT-SALDPATTRSILELLKDINRRLGLTILLI--THEMDVVKRIC 231 (366)
T ss_dssp HTTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHSCCEEEEE--ESCHHHHHHHC
T ss_pred HHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHHHhCCCEEEEE--ecCHHHHHHhC
Confidence 456778999999997 55666555555444443321 3334443 44555555554
No 389
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=63.41 E-value=27 Score=40.05 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=56.8
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh------hccCCcC
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA------ETSITID 497 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa------e~GIdIP 497 (1417)
.+..+||.+|+++-+.++++.+.++....+++.+..++|+.+..++...+.. +...|+|+|.-. ...++..
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc---CCCCEEEECHHHHHHHHHcCCcccc
Confidence 3558999999999999999998887655557889999999998777665543 445899999521 1234566
Q ss_pred CeEEEE
Q psy3476 498 GIRFVV 503 (1417)
Q Consensus 498 ~V~~VI 503 (1417)
.+.+||
T Consensus 152 ~~~~vV 157 (391)
T 1xti_A 152 HIKHFI 157 (391)
T ss_dssp TCSEEE
T ss_pred ccCEEE
Confidence 666554
No 390
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=63.16 E-value=3.7 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=17.8
Q ss_pred HHHHHhcCC--eEEEEcCCCcchhH
Q psy3476 47 IIDTVLKER--VVIIAGDTGCGKST 69 (1417)
Q Consensus 47 il~~i~~~~--~~iI~a~TGsGKTt 69 (1417)
+...+..++ .+++.||+|+||||
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTt 65 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTT 65 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHH
Confidence 345555555 59999999999997
No 391
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=63.12 E-value=2.9 Score=46.34 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=16.4
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
....++|.|+.||||||++
T Consensus 23 ~~~~I~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFV 41 (263)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4568899999999999965
No 392
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=62.64 E-value=3.1 Score=48.32 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=20.7
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
..+.+++|.|++|||||+.+.+++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999876665544
No 393
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=62.57 E-value=3.8 Score=46.70 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.8
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
...++|.||+|+|||+.
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 35899999999999974
No 394
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=62.37 E-value=2.6 Score=52.56 Aligned_cols=20 Identities=45% Similarity=0.506 Sum_probs=17.7
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..++.+.|+||+||||||.+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll 384 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLI 384 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCChHHHHH
Confidence 46789999999999999964
No 395
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=61.93 E-value=2.5 Score=44.41 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=17.0
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+..++|.|++|+||||.+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 45668999999999999865
No 396
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=61.78 E-value=4.6 Score=44.82 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=15.9
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
+++++|.|+.||||||+
T Consensus 48 g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp TCCEEEECSTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 88999999999999984
No 397
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=61.58 E-value=2.6 Score=44.26 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=26.2
Q ss_pred hhhhHHHhhhccccccC-CCcccccccHHHHh
Q psy3476 795 EEEEEEEEGERLESRTG-PGVCYRLYSEEQYS 825 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~-pG~CyRLyt~~~~~ 825 (1417)
.|.+.-.||.||+||.+ +|.||.+|++.+..
T Consensus 125 ~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 156 (185)
T 2jgn_A 125 SDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 156 (185)
T ss_dssp SSHHHHHHHHTTBCCTTSCEEEEEEECGGGGG
T ss_pred CCHHHHHHHccccCCCCCCcEEEEEEchhhHH
Confidence 35777899999999995 99999999986653
No 398
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.56 E-value=8.2 Score=47.30 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=14.9
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
.+.++|+||+|+|||+.
T Consensus 77 ~~~lLL~GppGtGKTtl 93 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTA 93 (516)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 36899999999999973
No 399
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=61.28 E-value=3.2 Score=45.26 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=15.3
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+..++|.|..||||||++
T Consensus 2 ~~~i~~~G~~g~GKtt~~ 19 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFV 19 (241)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 357899999999999964
No 400
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=61.26 E-value=3.2 Score=48.60 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
.+.+++|.||+||||||.+.+++.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999997666554
No 401
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=61.25 E-value=22 Score=38.36 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=55.6
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc-----hhh-ccCCcC
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN-----IAE-TSITID 497 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn-----Iae-~GIdIP 497 (1417)
.+..+||.+|+++-+.++++.+.++... .++.+..++|+.+..++...+.. ...|+|+|+ .+. ..+++.
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~ 175 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLR 175 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhh-cCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcc
Confidence 3567999999999999998888775543 46788999999998887666543 257999995 232 235677
Q ss_pred CeEEEE
Q psy3476 498 GIRFVV 503 (1417)
Q Consensus 498 ~V~~VI 503 (1417)
++.+||
T Consensus 176 ~~~~lV 181 (242)
T 3fe2_A 176 RTTYLV 181 (242)
T ss_dssp TCCEEE
T ss_pred cccEEE
Confidence 777655
No 402
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=61.04 E-value=5.3 Score=50.03 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcchhHH
Q psy3476 44 KQEIIDTVLKERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 44 q~~il~~i~~~~~~iI~a~TGsGKTt~ 70 (1417)
.+.+-..+..+..++|.||+||||||.
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHH
Confidence 345666778899999999999999974
No 403
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=60.92 E-value=5.2 Score=45.57 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=16.5
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+.++.|.|++||||||.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 34568899999999999853
No 404
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=60.69 E-value=6.7 Score=44.27 Aligned_cols=17 Identities=41% Similarity=0.425 Sum_probs=14.1
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
...+++.||+|||||+.
T Consensus 36 p~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQ 52 (293)
T ss_dssp CSEEEEEECTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35788999999999963
No 405
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=60.65 E-value=3.2 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=19.5
Q ss_pred HHHhcCCeEEEEcCCCcchhHHH
Q psy3476 49 DTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 49 ~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
-.+..+..+.|.||+||||||.+
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLl 155 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLS 155 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHH
T ss_pred eEeCCCCEEEEECCCCCCHHHHH
Confidence 34568999999999999999954
No 406
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=60.49 E-value=6.5 Score=45.70 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=14.9
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
...+++.||+|||||+.+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356899999999999743
No 407
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=60.49 E-value=3.1 Score=51.91 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=27.3
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
..+.+-+++|+||.- -.+|......+.+.+.....+ +.+++.
T Consensus 494 al~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~~-~tvi~i 535 (582)
T 3b5x_A 494 ALLRDAPVLILDEAT-SALDTESERAIQAALDELQKN-KTVLVI 535 (582)
T ss_pred HHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHcCC-CEEEEE
Confidence 346778899999997 567766666666655554444 344443
No 408
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=60.44 E-value=3.9 Score=47.88 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=20.5
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
+..+.+++|.|++||||||.+.+++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33578999999999999986655544
No 409
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=60.27 E-value=2.9 Score=52.41 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=26.6
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEcc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSA 359 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSA 359 (1417)
..+.+-+++|+||.- -.+|......+.+.+.....+.-+|+.|-
T Consensus 505 al~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~~~t~i~itH 548 (598)
T 3qf4_B 505 AFLANPKILILDEAT-SNVDTKTEKSIQAAMWKLMEGKTSIIIAH 548 (598)
T ss_dssp HHHTCCSEEEECCCC-TTCCHHHHHHHHHHHHHHHTTSEEEEESC
T ss_pred HHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 345678899999997 56666555555555544434433444433
No 410
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=60.21 E-value=3.3 Score=47.87 Aligned_cols=20 Identities=40% Similarity=0.690 Sum_probs=16.6
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
...+.+|+||+|||||+.+-
T Consensus 22 ~~~~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLD 41 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34688999999999999753
No 411
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=60.04 E-value=3.6 Score=49.51 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=22.4
Q ss_pred HHHHHhcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
++.-+..+..++|.|++|+|||+.+.+++.
T Consensus 193 ~lgGl~~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 193 LIGTLGPGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp HHCCCCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred hcCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 333345678999999999999986665544
No 412
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=60.01 E-value=6.4 Score=43.82 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=14.3
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
+-++|.||+||||||.+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34899999999999854
No 413
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=60.00 E-value=3 Score=52.06 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=25.8
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
.+.+-+++|+||.- -.+|......+.+.+.....+.-+|+.|
T Consensus 495 l~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~~~tvi~it 536 (582)
T 3b60_A 495 LLRDSPILILDEAT-SALDTESERAIQAALDELQKNRTSLVIA 536 (582)
T ss_dssp HHHCCSEEEEETTT-SSCCHHHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHhCCCEEEEECcc-ccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45577899999997 5667665555555554443343344443
No 414
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=59.79 E-value=3.6 Score=46.20 Aligned_cols=16 Identities=38% Similarity=0.765 Sum_probs=14.0
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
++.|.||+||||||.+
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999965
No 415
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=59.76 E-value=3.6 Score=46.24 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.2
Q ss_pred CeEEEEcCCCcchhHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ip 72 (1417)
.+++|+|+.||||||+.-
T Consensus 3 ~~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999653
No 416
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=59.58 E-value=3.1 Score=52.03 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=27.1
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
..+.+-+++|+||.- -.+|......+.+.+.....+ +.+++.
T Consensus 493 al~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~~-~tvi~i 534 (587)
T 3qf4_A 493 ALVKKPKVLILDDCT-SSVDPITEKRILDGLKRYTKG-CTTFII 534 (587)
T ss_dssp HHHTCCSEEEEESCC-TTSCHHHHHHHHHHHHHHSTT-CEEEEE
T ss_pred HHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 345678899999997 566766666666655554444 444443
No 417
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.49 E-value=8.6 Score=43.10 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=18.9
Q ss_pred HHHHHHHhcCC--eEEEEcCCCcchhHH
Q psy3476 45 QEIIDTVLKER--VVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 45 ~~il~~i~~~~--~~iI~a~TGsGKTt~ 70 (1417)
+.+.+.+..++ .+++.||+|+|||+.
T Consensus 31 ~~l~~~l~~~~~~~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 31 DRLQQIAKDGNMPHMIISGMPGIGKTTS 58 (323)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSSHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHH
Confidence 34555555543 489999999999973
No 418
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=59.25 E-value=4.1 Score=43.05 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=27.9
Q ss_pred EEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 57 VIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 57 ~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
++|.|++|||||+..-++..+ +. ++++..+-...-....+|++..+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~-~~~yiaT~~~~d~e~~~rI~~h~~~ 49 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-AP-QVLYIATSQILDDEMAARIQHHKDG 49 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CS-SEEEEECCCC------CHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHhc-CC-CeEEEecCCCCCHHHHHHHHHHHhc
Confidence 689999999999988887766 43 3434333222233455666665543
No 419
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=59.18 E-value=7.7 Score=49.99 Aligned_cols=42 Identities=21% Similarity=0.523 Sum_probs=31.8
Q ss_pred cCCC--cHHHHHHHHHHH---hcCCeEEEEcCCCcchhH---HHHHHHHH
Q psy3476 36 NSLP--VAQYKQEIIDTV---LKERVVIIAGDTGCGKST---QIPQYLVQ 77 (1417)
Q Consensus 36 ~~lp--~~~~q~~il~~i---~~~~~~iI~a~TGsGKTt---~ipq~ile 77 (1417)
..+| ||..-+.+...+ ..++.+||+|+.|+|||+ .+.+|+..
T Consensus 117 ~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~ 166 (784)
T 2v26_A 117 GTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTE 166 (784)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHHHHHHh
Confidence 4566 566677776655 367899999999999997 47777765
No 420
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=59.15 E-value=5.6 Score=44.56 Aligned_cols=16 Identities=44% Similarity=0.833 Sum_probs=13.7
Q ss_pred CeEEEEcCCCcchhHH
Q psy3476 55 RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ 70 (1417)
+-+++.||.||||||.
T Consensus 45 ~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLL 60 (274)
T ss_dssp SEEEEESSTTSCHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 3489999999999974
No 421
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=59.08 E-value=3.9 Score=47.49 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 45 QEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 45 ~~il~~i~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
++++.-+..++.++|.|++|+|||+.+.+++.
T Consensus 37 D~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~ 68 (338)
T 4a1f_A 37 DNYTSGFNKGSLVIIGARPSMGKTSLMMNMVL 68 (338)
T ss_dssp HHHHCSBCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 44555567789999999999999986655544
No 422
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=58.98 E-value=5.2 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=18.3
Q ss_pred HHHHHH--hcCCeEEEEcCCCcchhH
Q psy3476 46 EIIDTV--LKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 46 ~il~~i--~~~~~~iI~a~TGsGKTt 69 (1417)
.+++.+ ....++++.||+|+|||+
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~ 216 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTA 216 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHH
Confidence 345555 345688999999999997
No 423
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=58.81 E-value=3.7 Score=47.09 Aligned_cols=18 Identities=50% Similarity=0.774 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
..+++|.||+|||||+.+
T Consensus 24 ~g~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNII 41 (322)
T ss_dssp SSEEEEECCTTTCSTHHH
T ss_pred CCcEEEECCCCCcHHHHH
Confidence 348999999999999864
No 424
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=58.52 E-value=4 Score=48.17 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=17.4
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+..++|.||+||||||.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46789999999999999854
No 425
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=58.50 E-value=4 Score=49.23 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=20.5
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
+..++.++|.|++|+|||+.+.+++.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 45678999999999999986555443
No 426
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=58.17 E-value=6 Score=45.03 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=20.4
Q ss_pred HHhcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
.+..++.+.+.|++|+||||.+=..+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999999999764433
No 427
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=57.97 E-value=9.2 Score=44.88 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.9
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
...++|.||+|+|||+.
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999963
No 428
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=57.93 E-value=5.5 Score=44.62 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=13.5
Q ss_pred eEEEEcCCCcchhHH
Q psy3476 56 VVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ 70 (1417)
.+++.||+|+|||+.
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 589999999999973
No 429
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=57.76 E-value=5 Score=49.22 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=19.0
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
.+..+++|.|.||||||+.+-..+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHH
Confidence 356789999999999998654443
No 430
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=57.50 E-value=4.2 Score=50.46 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=17.1
Q ss_pred HhcCCeEEEEcCCCcchhHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ 70 (1417)
+..+.+++|.|+.||||||.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTL 385 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTL 385 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHH
T ss_pred cccceEEEEECCCCChHHHH
Confidence 34678999999999999983
No 431
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=57.18 E-value=3.2 Score=51.88 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=29.1
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHH
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELF 366 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~ 366 (1417)
.+.+-+++++||.- -.+|......+.+.+.....+ +.+++. |=+.+.+
T Consensus 498 l~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~~-~tvi~i-tH~~~~~ 545 (595)
T 2yl4_A 498 LLKNPKILLLDEAT-SALDAENEYLVQEALDRLMDG-RTVLVI-AHRLSTI 545 (595)
T ss_dssp HHHCCSEEEEECCC-SSCCHHHHHHHHHHHHHHHTT-SEEEEE-CCCHHHH
T ss_pred HHcCCCEEEEECcc-cCCCHHHHHHHHHHHHHHhcC-CEEEEE-ecCHHHH
Confidence 45677899999997 567766555555555544334 455554 3344443
No 432
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=56.59 E-value=6.1 Score=42.24 Aligned_cols=21 Identities=24% Similarity=0.619 Sum_probs=16.3
Q ss_pred eEEEEcCCCcchhHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~il 76 (1417)
+++++|+.|||||+.+...+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 678999999999985544433
No 433
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=56.32 E-value=9.2 Score=51.36 Aligned_cols=78 Identities=10% Similarity=0.131 Sum_probs=61.1
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhh-c---cCCcCCe
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAE-T---SITIDGI 499 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae-~---GIdIP~V 499 (1417)
.++.+||.+|+++-+.++++.+.++. ..++.+..+||+++..+|....+.+..|...|+|+|+-.- . -++..++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l 197 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRF 197 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCC
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCc
Confidence 46789999999999999999998855 4578899999999998888778888888889999996321 0 1344566
Q ss_pred EEEE
Q psy3476 500 RFVV 503 (1417)
Q Consensus 500 ~~VI 503 (1417)
.+||
T Consensus 198 ~~lV 201 (1104)
T 4ddu_A 198 DFVF 201 (1104)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 6554
No 434
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=56.30 E-value=5.7 Score=39.31 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=17.2
Q ss_pred eEEEEcCCCcchhHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~il 76 (1417)
.+++.|++|+|||+.+-.++-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999997766553
No 435
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=56.15 E-value=0.89 Score=48.08 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=25.4
Q ss_pred cccccchHHHHHHHhhhccccchhHHHHHHhhccc--------------hhhhHhhhhcc
Q psy3476 1120 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST--------------AEVKIILMSAT 1165 (1417)
Q Consensus 1120 ~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~--------------~~lk~ilmsat 1165 (1417)
..+..++++|+||+|.=. ...+.-.+++..+..+ +..++++||||
T Consensus 158 ~~~~~~~~iIiDEah~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 158 VQLSDFSLIIIDECHHTN-KEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp CCGGGCSEEEETTC--------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred cchhcccEEEEECchhhc-cCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 356788999999999653 2223333333333222 67889999998
No 436
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=56.14 E-value=3.4 Score=42.66 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=23.1
Q ss_pred hhhhHHHhhhcccccc-CCCcccccccHHHHh
Q psy3476 795 EEEEEEEEGERLESRT-GPGVCYRLYSEEQYS 825 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~-~pG~CyRLyt~~~~~ 825 (1417)
.+.+.-.||.||+||. .+|.||.+++..+..
T Consensus 119 ~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 119 PDYETYLHRIGRTGRFGKKGLAFNMIEVDELP 150 (175)
T ss_dssp CCHHHHHHHHCBC----CCEEEEEEECGGGHH
T ss_pred CCHHHHHHHhcccccCCCCceEEEEEccchHH
Confidence 5567788999999998 589999999986543
No 437
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=56.07 E-value=7.4 Score=44.42 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.6
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
.+.+++.||+|||||+.
T Consensus 51 ~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCEEEEECSSSSCHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 45799999999999973
No 438
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=56.02 E-value=4.1 Score=49.75 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 45 QEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 45 ~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
++++.-+..+..++|.|++|+|||+.+.|++..
T Consensus 233 D~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 233 NDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp HHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred hHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 444444567889999999999999877776654
No 439
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=55.88 E-value=5.6 Score=45.45 Aligned_cols=17 Identities=47% Similarity=0.601 Sum_probs=14.6
Q ss_pred cCCeEEEEcCCCcchhH
Q psy3476 53 KERVVIIAGDTGCGKST 69 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt 69 (1417)
....+++.||+|+|||+
T Consensus 44 ~~~~vLl~G~~GtGKT~ 60 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKST 60 (350)
T ss_dssp GGCCEEEECCGGGCTTH
T ss_pred CCceEEEECCCCccHHH
Confidence 34569999999999996
No 440
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=55.84 E-value=8.3 Score=44.93 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=14.8
Q ss_pred cCCeEEEEcCCCcchhH
Q psy3476 53 KERVVIIAGDTGCGKST 69 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt 69 (1417)
....+++.||+|+|||+
T Consensus 71 ~~~~ill~Gp~GtGKT~ 87 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTL 87 (376)
T ss_dssp CCCCEEEECCTTSSHHH
T ss_pred CCCCEEEECCCCCCHHH
Confidence 35689999999999996
No 441
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=55.83 E-value=3.8 Score=41.83 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=26.0
Q ss_pred hhhhHHHhhhccccccC-CCcccccccHHHHh
Q psy3476 795 EEEEEEEEGERLESRTG-PGVCYRLYSEEQYS 825 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~-pG~CyRLyt~~~~~ 825 (1417)
.+.+.-.||.||+||.+ +|.||-++++.+..
T Consensus 114 ~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 114 LEKESYVHRTGRTGRAGNKGKAISFVTAFEKR 145 (163)
T ss_dssp SSHHHHHHHTTTSSCTTCCEEEEEEECGGGHH
T ss_pred CCHHHHHHhccccCcCCCCceEEEEecHHHHH
Confidence 45677899999999995 99999999986553
No 442
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=55.79 E-value=31 Score=36.45 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=46.6
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh------hccCCc
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA------ETSITI 496 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa------e~GIdI 496 (1417)
..+..+||.+|+++-+.++++.+..+... .+..+..++|+.+..++...+. ...|+|+|.-. ...++.
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv~Tp~~l~~~~~~~~~~~ 153 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRT 153 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEECC----------CT-----TCSEEEECHHHHHHHHHTTSSCC
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcc-cCceEEEEeCCcchHHHHhcCC-----CCCEEEECHHHHHHHHHhCCcch
Confidence 34568999999999999999988875533 3678889999987766554432 26799999622 234556
Q ss_pred CCeEEEE
Q psy3476 497 DGIRFVV 503 (1417)
Q Consensus 497 P~V~~VI 503 (1417)
..+.+||
T Consensus 154 ~~~~~iV 160 (224)
T 1qde_A 154 DKIKMFI 160 (224)
T ss_dssp TTCCEEE
T ss_pred hhCcEEE
Confidence 6666554
No 443
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=55.68 E-value=31 Score=37.05 Aligned_cols=76 Identities=9% Similarity=0.079 Sum_probs=46.4
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc-----hhhc-cCCcC
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN-----IAET-SITID 497 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn-----Iae~-GIdIP 497 (1417)
.+..+||.+|+++-+.++++.++++... .+..+..++|+....++. .....+...|+|+|. .+.. .++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~---~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 172 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDY-MGATCHACIGGTNVRNEM---QKLQAEAPHIVVGTPGRVFDMLNRRYLSPK 172 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCST
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhh-cCceEEEEECCCchHHHH---HHHhcCCCCEEEECHHHHHHHHHhCCcCcc
Confidence 4568999999999999999999876532 356778888887654432 334455578999994 3333 35566
Q ss_pred CeEEEE
Q psy3476 498 GIRFVV 503 (1417)
Q Consensus 498 ~V~~VI 503 (1417)
.+.+||
T Consensus 173 ~~~~lV 178 (237)
T 3bor_A 173 WIKMFV 178 (237)
T ss_dssp TCCEEE
T ss_pred cCcEEE
Confidence 676655
No 444
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=55.40 E-value=6 Score=39.07 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=16.8
Q ss_pred eEEEEcCCCcchhHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~il 76 (1417)
.+++.|++|+||||.+-.++-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999997655543
No 445
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=55.15 E-value=8 Score=42.16 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.3
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+++.|+.||||||++
T Consensus 20 ~~~~i~~~G~~g~GKst~~ 38 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQS 38 (223)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4568899999999999964
No 446
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=55.03 E-value=5.1 Score=42.04 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=14.1
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
++.|.|+.||||||+.
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7889999999999854
No 447
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=54.79 E-value=9.7 Score=40.30 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=19.5
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
...+++|.|.+|+||||.+-.++..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4468899999999999976655544
No 448
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=54.54 E-value=5.5 Score=46.78 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=20.0
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
+..+.+++|.|++|||||+...+++.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 34578999999999999986555443
No 449
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=54.51 E-value=5 Score=45.16 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.1
Q ss_pred CeEEEEcCCCcchhHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ip 72 (1417)
.++.|+|+.||||||+.-
T Consensus 76 ~iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 378999999999998543
No 450
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=54.44 E-value=13 Score=44.61 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=15.1
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
.+.+++.||+|||||+.+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999743
No 451
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=54.43 E-value=26 Score=36.34 Aligned_cols=73 Identities=8% Similarity=0.079 Sum_probs=51.4
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc-----hhh-ccCCcC
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN-----IAE-TSITID 497 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn-----Iae-~GIdIP 497 (1417)
.+..+||.+|+++-+.++++.+.++.. .+.+..++|+.+..++...+.. ...|+|+|. .+. ..++..
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~ 143 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVLDLS 143 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSSCCT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCcchh
Confidence 356899999999999999999887652 3678889999876655444332 357999995 222 245566
Q ss_pred CeEEEE
Q psy3476 498 GIRFVV 503 (1417)
Q Consensus 498 ~V~~VI 503 (1417)
++.+||
T Consensus 144 ~~~~iV 149 (207)
T 2gxq_A 144 RVEVAV 149 (207)
T ss_dssp TCSEEE
T ss_pred hceEEE
Confidence 666555
No 452
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=54.12 E-value=6.7 Score=45.88 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=18.8
Q ss_pred HhcCCeEEEEcCCCcchhHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
...++.+.|.|++|+||||.+=
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln 233 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLN 233 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHH
T ss_pred hcCCCEEEEECCCCccHHHHHH
Confidence 3478899999999999999763
No 453
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=53.98 E-value=5.3 Score=43.91 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=13.5
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
.++.|.|+.||||||
T Consensus 23 ~iI~I~G~~GSGKST 37 (252)
T 1uj2_A 23 FLIGVSGGTASGKSS 37 (252)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 378899999999997
No 454
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=53.89 E-value=4 Score=52.88 Aligned_cols=103 Identities=12% Similarity=0.049 Sum_probs=73.5
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc----C---CCcEEEecchHHHHHHHHHHHHHHHccccCC
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA----G---FQRIACTQPRRIACISLSKRVAYETLSQYSN 110 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~----~---~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~ 110 (1417)
...+.+|.++++.+.++++++|++|||||||.++..++++. . ..+++|..|++..+.+...++.+... ..|.
T Consensus 247 ~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~-~~~~ 325 (797)
T 4a2q_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE-RQGY 325 (797)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG-GGTC
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc-cCCc
Confidence 34578999999999999999999999999999877766553 1 46799999999999998887766543 2244
Q ss_pred eEEEEEeeccc------ccCCccEEEEccchhHHhhc
Q psy3476 111 LVGYQIRFEKH------RREKTKIVFITEGLLLRQDS 141 (1417)
Q Consensus 111 ~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l~ 141 (1417)
.|+........ ......|+++|+|+|.+.+.
T Consensus 326 ~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~ 362 (797)
T 4a2q_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFE 362 (797)
T ss_dssp CEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHH
T ss_pred eEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHH
Confidence 55443322211 11356788888888877553
No 455
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=53.89 E-value=6.8 Score=45.18 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=18.5
Q ss_pred eEEEEcCCCcchhHHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~ile 77 (1417)
++.|.||.||||||...|++.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999977766543
No 456
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=53.88 E-value=4 Score=47.75 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=54.4
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc----C-------------------CCcEEEecchHHH
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA----G-------------------FQRIACTQPRRIA 92 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~----~-------------------~~~i~~tqPrr~a 92 (1417)
.--..+.+|.++++.+.++++++++||||||||..+..++++. + ..+++++.|+|.+
T Consensus 34 ~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 113 (417)
T 2i4i_A 34 RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTREL 113 (417)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHH
T ss_pred CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHH
Confidence 3335578899999999999999999999999998766655432 1 1469999999999
Q ss_pred HHHHHHHHHHH
Q psy3476 93 CISLSKRVAYE 103 (1417)
Q Consensus 93 a~~~a~rva~e 103 (1417)
+.|+++++.+.
T Consensus 114 ~~q~~~~~~~~ 124 (417)
T 2i4i_A 114 AVQIYEEARKF 124 (417)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877554
No 457
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=53.83 E-value=5.2 Score=42.50 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCcchhHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ip 72 (1417)
+.++.|+|+.||||||..-
T Consensus 12 ~~iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3477899999999998653
No 458
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=53.69 E-value=6.7 Score=39.03 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=16.3
Q ss_pred eEEEEcCCCcchhHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~i 75 (1417)
.++|.|++|+||||.+-.++
T Consensus 7 ~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47899999999999765544
No 459
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=53.62 E-value=4.3 Score=48.60 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=18.5
Q ss_pred HHhcCCe--EEEEcCCCcchhHHHH
Q psy3476 50 TVLKERV--VIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 50 ~i~~~~~--~iI~a~TGsGKTt~ip 72 (1417)
.+..+.+ +.|.|++||||||.+=
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln 60 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMD 60 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHH
T ss_pred EecCCCeeEEEEECCCCCCHHHHHH
Confidence 4567888 9999999999999653
No 460
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=53.61 E-value=4.6 Score=47.14 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
++.+.|.|++||||||.+
T Consensus 170 g~k~~IvG~nGsGKSTLl 187 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLV 187 (365)
T ss_dssp CEEEEEECCTTSHHHHHH
T ss_pred hCeEEEECCCCCCHHHHH
Confidence 778899999999999954
No 461
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=53.34 E-value=10 Score=45.62 Aligned_cols=15 Identities=47% Similarity=0.893 Sum_probs=13.8
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
+.+++.||+|||||+
T Consensus 64 ~~iLl~GppGtGKT~ 78 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTA 78 (456)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred CeEEEECCCcCCHHH
Confidence 579999999999996
No 462
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=52.94 E-value=8.4 Score=42.30 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=15.5
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
...++.|.||+||||||..
T Consensus 8 ~~~~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVS 26 (233)
T ss_dssp -CCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3458899999999999854
No 463
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=52.91 E-value=11 Score=48.08 Aligned_cols=40 Identities=25% Similarity=0.486 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHH---hcCCeEEEEcCCCcchhHH---HHHHHHHcC
Q psy3476 40 VAQYKQEIIDTV---LKERVVIIAGDTGCGKSTQ---IPQYLVQAG 79 (1417)
Q Consensus 40 ~~~~q~~il~~i---~~~~~~iI~a~TGsGKTt~---ipq~ile~~ 79 (1417)
||..-+.+...+ ..++.+||+|+.|+|||+. +.+|+...+
T Consensus 77 ifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~ 122 (697)
T 1lkx_A 77 MYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVS 122 (697)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhc
Confidence 355666666555 4678999999999999974 778877644
No 464
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=52.63 E-value=6.5 Score=42.54 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=13.6
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
..+++.||.|+|||+
T Consensus 59 n~ili~GPPGtGKTt 73 (212)
T 1tue_A 59 NCLVFCGPANTGKSY 73 (212)
T ss_dssp SEEEEESCGGGCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 368999999999997
No 465
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=52.59 E-value=6.9 Score=40.29 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCcchhHHHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
.-.++|.|++|+|||+.+-.+.-
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999997765543
No 466
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=52.48 E-value=4.9 Score=47.00 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=52.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc-----hhhc-cCCcC
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN-----IAET-SITID 497 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn-----Iae~-GIdIP 497 (1417)
.++++||.+|+++-+.++++.+..+... .++.+..++|+....++...+.. ...|+|+|. .+.. .+...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~----~~~ivv~Tp~~l~~~l~~~~~~~~ 178 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRSLRTR 178 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcc-CCeEEEEEECCCCHHHHHHHhhc----CCCEEEcCHHHHHHHHHhCCccHh
Confidence 4578999999999999999988875532 45778889999988776655542 237999995 2333 34445
Q ss_pred CeEEEE
Q psy3476 498 GIRFVV 503 (1417)
Q Consensus 498 ~V~~VI 503 (1417)
.+.+||
T Consensus 179 ~~~~vV 184 (410)
T 2j0s_A 179 AIKMLV 184 (410)
T ss_dssp TCCEEE
T ss_pred heeEEE
Confidence 555444
No 467
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=52.37 E-value=7.1 Score=39.42 Aligned_cols=21 Identities=43% Similarity=0.784 Sum_probs=17.2
Q ss_pred eEEEEcCCCcchhHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~il 76 (1417)
.++|.|++|+|||+.+-.++-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999997765553
No 468
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=52.30 E-value=8.4 Score=43.72 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=17.8
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..++.+.+.||+||||||.+
T Consensus 166 ~l~geiv~l~G~sG~GKSTll 186 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLL 186 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHH
T ss_pred HhcCCeEEEECCCCCcHHHHH
Confidence 346789999999999999865
No 469
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=52.24 E-value=7.1 Score=40.78 Aligned_cols=20 Identities=35% Similarity=0.760 Sum_probs=15.9
Q ss_pred eEEEEcCCCcchhHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~i 75 (1417)
.++|.|+.|+||||.+-.+.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 46899999999999765443
No 470
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=52.01 E-value=8.7 Score=46.12 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.7
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
...++|.||+|+||||.
T Consensus 130 ~~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHL 146 (440)
T ss_dssp SCCEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35799999999999974
No 471
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=51.97 E-value=7.2 Score=46.48 Aligned_cols=22 Identities=45% Similarity=0.570 Sum_probs=17.8
Q ss_pred CCeEEEEcCCCcchhHHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
..+++|+|+.||||||+.-...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4688999999999999765443
No 472
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=51.81 E-value=8.1 Score=45.08 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.0
Q ss_pred CCeEEE--EcCCCcchhHHH
Q psy3476 54 ERVVII--AGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI--~a~TGsGKTt~i 71 (1417)
...++| .|+.|+|||+.+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 457888 999999999754
No 473
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=51.80 E-value=5.1 Score=49.50 Aligned_cols=22 Identities=45% Similarity=0.542 Sum_probs=19.2
Q ss_pred HhcCCeEEEEcCCCcchhHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
+..+.++.|.||.||||||.+-
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk 65 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVK 65 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHH
Confidence 5688999999999999999653
No 474
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=51.74 E-value=11 Score=50.10 Aligned_cols=43 Identities=21% Similarity=0.545 Sum_probs=31.9
Q ss_pred cCCC--cHHHHHHHHHHHh---cCCeEEEEcCCCcchhHH---HHHHHHHc
Q psy3476 36 NSLP--VAQYKQEIIDTVL---KERVVIIAGDTGCGKSTQ---IPQYLVQA 78 (1417)
Q Consensus 36 ~~lp--~~~~q~~il~~i~---~~~~~iI~a~TGsGKTt~---ipq~ile~ 78 (1417)
..+| ||...+.+...+. .++.+||+|++|||||+. +.+|+...
T Consensus 121 ~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~yLa~~ 171 (1052)
T 4anj_A 121 GTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTES 171 (1052)
T ss_dssp TTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 3455 4666777766654 678999999999999974 77777653
No 475
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=51.74 E-value=7.5 Score=38.66 Aligned_cols=21 Identities=19% Similarity=0.556 Sum_probs=16.8
Q ss_pred eEEEEcCCCcchhHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~il 76 (1417)
.+++.|++|+|||+.+-.++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999997765543
No 476
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=51.72 E-value=2.7 Score=49.68 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=28.7
Q ss_pred cEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccC
Q psy3476 321 DVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 360 (1417)
Q Consensus 321 ~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSAT 360 (1417)
.++|+||.. -.++......+...+.....+.++|+.|--
T Consensus 317 ~~LlLDEpt-~~LD~~~~~~l~~~L~~l~~~~~vi~itH~ 355 (415)
T 4aby_A 317 PSVVFDEVD-AGIGGAAAIAVAEQLSRLADTRQVLVVTHL 355 (415)
T ss_dssp SEEEESSTT-TTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CEEEEECCC-CCCCHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 899999998 677877666666666655556777776654
No 477
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=51.65 E-value=7.2 Score=40.60 Aligned_cols=20 Identities=35% Similarity=0.760 Sum_probs=16.0
Q ss_pred eEEEEcCCCcchhHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~i 75 (1417)
.++|.|+.||||||.+-.+.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 57899999999999765443
No 478
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=51.32 E-value=7.7 Score=38.40 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=16.8
Q ss_pred eEEEEcCCCcchhHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~il 76 (1417)
.+++.|++|+|||+.+-.++-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999997655543
No 479
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=51.30 E-value=7.7 Score=38.38 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=16.7
Q ss_pred eEEEEcCCCcchhHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~il 76 (1417)
.+++.|++|+|||+.+-.++-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999997655443
No 480
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=51.17 E-value=5 Score=50.90 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.6
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+..+.|.||+||||||.+
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl 365 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLV 365 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEEeeCCCCHHHHH
Confidence 36789999999999999965
No 481
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=51.13 E-value=7.7 Score=39.13 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=16.8
Q ss_pred eEEEEcCCCcchhHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~i 75 (1417)
.++|.|++|+||||.+-.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999776654
No 482
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=51.06 E-value=7.3 Score=39.90 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=17.6
Q ss_pred CeEEEEcCCCcchhHHHHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~il 76 (1417)
..++|.|++|+|||+.+-.++-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999997765543
No 483
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=50.99 E-value=7.7 Score=38.65 Aligned_cols=21 Identities=29% Similarity=0.683 Sum_probs=17.0
Q ss_pred eEEEEcCCCcchhHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~il 76 (1417)
.++|.|++|+|||+.+-.++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999997766553
No 484
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=50.80 E-value=18 Score=45.05 Aligned_cols=59 Identities=20% Similarity=0.107 Sum_probs=51.5
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccC--CCCCceEEEecc
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA--PEGLRKCIVSTN 488 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f--~~G~rkVLVATn 488 (1417)
.+.+||.+|+++-+....+.+.++ ++.+..++|+++..++..+.... ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 578999999999999999888873 67889999999999998888766 567889999998
No 485
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=50.79 E-value=6.1 Score=48.54 Aligned_cols=26 Identities=23% Similarity=0.650 Sum_probs=21.2
Q ss_pred HHhcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
.+..+.++.|.|++||||||.+-+++
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~ 302 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFV 302 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34678899999999999999766554
No 486
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=50.68 E-value=7.9 Score=38.56 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=16.9
Q ss_pred eEEEEcCCCcchhHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~il 76 (1417)
.+++.|++|+|||+.+-.++-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999997665543
No 487
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=50.58 E-value=6.5 Score=48.59 Aligned_cols=18 Identities=33% Similarity=0.636 Sum_probs=15.6
Q ss_pred cCCeEEEEcCCCcchhHH
Q psy3476 53 KERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ 70 (1417)
.+.++++.||+||||||.
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 367899999999999973
No 488
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=50.56 E-value=5.1 Score=45.36 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=11.7
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
..++.|+|+.||||||.
T Consensus 5 ~~iIgItG~sGSGKSTv 21 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTV 21 (290)
T ss_dssp SCEEEEESCC---CCTH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45789999999999983
No 489
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=50.54 E-value=7.3 Score=56.71 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=21.0
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
++.+.+..+.-++++||||||||+.+
T Consensus 915 ql~e~~~~r~gvmlvGptgsGKTt~~ 940 (2695)
T 4akg_A 915 QFYYMQKTQQALILVGKAGCGKTATW 940 (2695)
T ss_dssp HHHHHHHHCSEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhcceEEEECCCCCCHHHHH
Confidence 34556667888999999999999864
No 490
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=50.38 E-value=4.4 Score=55.53 Aligned_cols=21 Identities=38% Similarity=0.733 Sum_probs=0.0
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..++.+-|+|+|||||||.+
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~ 1122 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVV 1122 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHH
T ss_pred ECCCCEEEEECCCCChHHHHH
No 491
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=50.38 E-value=20 Score=43.20 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=15.3
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
.+.+++.||+|||||+.+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999744
No 492
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=50.30 E-value=8.1 Score=38.50 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=16.4
Q ss_pred eEEEEcCCCcchhHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~i 75 (1417)
.+++.|++|+|||+.+-.++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999765554
No 493
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=50.18 E-value=4.8 Score=44.30 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=14.2
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
.+.+++.||+|||||+.
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 44589999999999973
No 494
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.18 E-value=6.9 Score=44.83 Aligned_cols=43 Identities=12% Similarity=0.363 Sum_probs=28.7
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCC
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 361 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATl 361 (1417)
..+.+++|+||+|. ++.+....+++.+....++..+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 45788999999993 67666667777766655565666655443
No 495
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=50.15 E-value=8.4 Score=49.50 Aligned_cols=25 Identities=20% Similarity=0.515 Sum_probs=18.8
Q ss_pred HHHHHHh--cCCeEEEEcCCCcchhHH
Q psy3476 46 EIIDTVL--KERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 46 ~il~~i~--~~~~~iI~a~TGsGKTt~ 70 (1417)
++++.+. ...++++.||+|+|||+.
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~l 217 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAI 217 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHH
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHH
Confidence 4555553 455899999999999973
No 496
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=50.02 E-value=8.3 Score=38.28 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=16.2
Q ss_pred eEEEEcCCCcchhHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~i 75 (1417)
.+++.|++|+|||+.+-.++
T Consensus 5 ki~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999998765544
No 497
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=49.96 E-value=7.8 Score=39.91 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCcchhHHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
.-.++|.|++|+||||.+-.++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999776554
No 498
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=49.94 E-value=27 Score=41.77 Aligned_cols=17 Identities=35% Similarity=0.687 Sum_probs=14.5
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
.+++++|++|+||||.+
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 37899999999999843
No 499
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=49.88 E-value=8.9 Score=40.75 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
...++|.|+.|+||||.+-.++..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357788999999999988777655
No 500
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=49.62 E-value=9.6 Score=38.41 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCcchhHHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
...++|.|++|+|||+.+-.++
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999998765544
Done!