RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3476
(1417 letters)
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 417 bits (1074), Expect = e-129
Identities = 153/456 (33%), Positives = 237/456 (51%), Gaps = 25/456 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D+ LS Y ++LDE HER L D L+G++K ++ ++KII+MSAT++ E F Y
Sbjct: 199 EAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRY 258
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR-ILSIIDKKYPRTERGDV 428
FN A ++ VPGR YP++L Y P + D Y+ + + + + E GD+
Sbjct: 259 FND-APLLAVPGRTYPVELYYTPEFQRD-----------YLDSAIRTVLQIHATEEAGDI 306
Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGW------IVLPLHSTLSLEEQDRVFHYAPEGL-- 480
L+F++G EI VR ++ V PL+ +L +Q R+F APE
Sbjct: 307 LLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNG 366
Query: 481 ---RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKG 537
RK ++STNIAETS+TIDGI +VVD G K+ Y+ ++ +L ISKASA+QR G
Sbjct: 367 RPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAG 426
Query: 538 RAGRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
RAGRT PG C+RLY+EE + L E S PEI R ++ S +L L +G+ D+ F F++ P
Sbjct: 427 RAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPP 486
Query: 597 PAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLA 656
E + ++ L +D + +T LGR S P+D L ML+ F +L++
Sbjct: 487 APETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIV 546
Query: 657 AVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRR 716
A+LSV + F + A+ GD +T+LN Y + + KWC+
Sbjct: 547 AMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDH 606
Query: 717 GIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDAS 752
+ + +RSQ ++++ L + ++
Sbjct: 607 YLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESP 642
Score = 132 bits (335), Expect = 1e-31
Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 5/125 (4%)
Query: 19 FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV-- 76
F +E + I + + LPV + E + ++++ G+TG GK+TQIPQ+++
Sbjct: 74 FTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFD 133
Query: 77 ---QAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITE 133
++ACTQPRR+A +S+++RVA E + VGY IRFE KT + ++T+
Sbjct: 134 EMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTD 193
Query: 134 GLLLR 138
G+LLR
Sbjct: 194 GMLLR 198
Score = 121 bits (305), Expect = 6e-28
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RT PG C+RLY+EE + L E S PEI R ++ S +L L +G+ D+ F F++ P E
Sbjct: 430 RTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPE 489
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
+ ++ L +D + +T LGR S P+D L ML+ F +L
Sbjct: 490 TMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEIL 543
Score = 80.1 bits (198), Expect = 3e-15
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
D+ LS Y ++LDE HER L D L+G++K ++ ++KII+MSAT++ E F YFN
Sbjct: 202 EDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260
Score = 47.7 bits (114), Expect = 3e-05
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 230 TDNFLSSYDILILDEVHERHLYGDFLLGVI 259
D+ LS Y +ILDE HER L D L+G++
Sbjct: 202 EDHDLSRYSCIILDEAHERTLATDILMGLL 231
Score = 44.6 bits (106), Expect = 2e-04
Identities = 41/279 (14%), Positives = 81/279 (29%), Gaps = 84/279 (30%)
Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
+D + +T LGR S P+D L ML+ F +L + L+ F+ +++
Sbjct: 502 ACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKD 561
Query: 1086 EEE-EEAGERLESMDA---------NEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHE 1135
++ ++A D + + ++ + D++L+ + D I
Sbjct: 562 KKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRS 621
Query: 1136 RHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVT 1195
+ L ++ R +L +
Sbjct: 622 Q------LERLMN----------------------------RYNLELNTTDYESPKYFDN 647
Query: 1196 ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDD 1255
I K + SG + QVA KD V +HP +V +
Sbjct: 648 IRKALA-SGFFMQVAKKRSGAKGYI------TVKDNQDVLIHPSTVLGHDAE-------- 692
Query: 1256 IVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNC 1294
++Y + TSK ++
Sbjct: 693 ---------------------WVIYNEFVLTSKNYIRTV 710
Score = 40.0 bits (94), Expect = 0.006
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 980 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 1021
+D + +T LGR S P+D L ML+ F +L
Sbjct: 502 ACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEIL 543
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 182 bits (463), Expect = 1e-49
Identities = 51/303 (16%), Positives = 96/303 (31%), Gaps = 52/303 (17%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
+ + + +Y+++V+DE H G I E I M+AT
Sbjct: 101 RLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIS-TRVEMGEAAAIFMTATP-------- 151
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
PG P PI +++R E+ + I +G +
Sbjct: 152 ----------PGSTDPFPQSNSPIEDIEREIPERSWNTGFDWI---------TDYQGKTV 192
Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
F+ I + I ++ G V+ L E + +V+T+I
Sbjct: 193 WFVPSIKAGNDIANCLRK-----SGKRVIQLSRKTFDTEYPK----TKLTDWDFVVTTDI 243
Query: 490 AETSITIDGIRFVVDSGKVKE--MSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
+E V+D + + + D ++ ++ ASA QR+GR GR
Sbjct: 244 SEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED 302
Query: 548 YRLYS----EEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
+ + A ++ ++ LL + G + E + I+
Sbjct: 303 DQYVFSGDPLKNDEDHAHWTEAKM--------LLDNIYTPEGIIPTLFGPEREKTQAIDG 354
Query: 604 SVR 606
R
Sbjct: 355 EFR 357
Score = 82.6 bits (204), Expect = 2e-16
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 14/106 (13%)
Query: 37 SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
P + ++I K+R+ I+ G GK+ +I +V+ R P R+
Sbjct: 5 GEPDYEVDEDIFR---KKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVA 61
Query: 94 ISLSKRVAYETLSQYSNLVGYQ-IRFEKHRREKTKIVFITEGLLLR 138
+ + + + YQ + + + +
Sbjct: 62 AEMEEALRGLP-------IRYQTPAVKSDHTGREIVDLMCHATFTT 100
Score = 48.7 bits (116), Expect = 9e-06
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 1116 VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 1166
+ + + +Y+++V+DE H G I E I M+AT
Sbjct: 102 LLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIS-TRVEMGEAAAIFMTATP 151
Score = 37.1 bits (86), Expect = 0.037
Identities = 8/70 (11%), Positives = 18/70 (25%), Gaps = 12/70 (17%)
Query: 809 RTGPGVCYRLYS----EEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 864
R + + A ++ ++ LL + G + E
Sbjct: 296 RNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM--------LLDNIYTPEGIIPTLFGPERE 347
Query: 865 PAENIESSVR 874
+ I+ R
Sbjct: 348 KTQAIDGEFR 357
Score = 32.1 bits (73), Expect = 1.3
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 228 VATDNFLSSYDILILDEVHERHLYGDFLLGVIS 260
+ + + +Y+++++DE H G IS
Sbjct: 102 LLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIS 134
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 182 bits (464), Expect = 2e-48
Identities = 52/305 (17%), Positives = 95/305 (31%), Gaps = 52/305 (17%)
Query: 308 TVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 367
T + + + +Y+++V+DE H G I E I M+AT
Sbjct: 266 TTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIS-TRVEMGEAAAIFMTATP------ 318
Query: 368 TYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
PG P PI +++R E+ + I +G
Sbjct: 319 ------------PGSTDPFPQSNSPIEDIEREIPERSWNTGFDWI---------TDYQGK 357
Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
+ F+ I A + G V+ L E + +V+T
Sbjct: 358 TVWFVPSIKAG---NDIANCLRKS--GKRVIQLSRKTFDTEYPK----TKLTDWDFVVTT 408
Query: 488 NIAETSITIDGIRFVVDSGKVKE--MSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
+I+E V+D + + + D ++ ++ ASA QR+GR GR
Sbjct: 409 DISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 467
Query: 546 VCYRLYS----EEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENI 601
+ + A ++ ++ LL + G + E + I
Sbjct: 468 EDDQYVFSGDPLKNDEDHAHWTEAKM--------LLDNIYTPEGIIPTLFGPEREKTQAI 519
Query: 602 ESSVR 606
+ R
Sbjct: 520 DGEFR 524
Score = 75.8 bits (186), Expect = 6e-14
Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 11/110 (10%)
Query: 33 ETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPR 89
TQ + D K+R+ I+ G GK+ +I +V+ R P
Sbjct: 165 ITQAERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPT 224
Query: 90 RIACISLSKRVAYETLSQYSNLVGYQ-IRFEKHRREKTKIVFITEGLLLR 138
R+ + + + + YQ + + + +
Sbjct: 225 RVVAAEMEEALRGLP-------IRYQTPAVKSDHTGREIVDLMCHATFTT 267
Score = 48.0 bits (114), Expect = 2e-05
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 1166
+ + +Y+++V+DE H G I E I M+AT
Sbjct: 271 SSTRVPNYNLIVMDEAHFTDPCSVAARGYIS-TRVEMGEAAAIFMTATP 318
Score = 38.0 bits (88), Expect = 0.022
Identities = 8/70 (11%), Positives = 18/70 (25%), Gaps = 12/70 (17%)
Query: 809 RTGPGVCYRLYS----EEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 864
R + + A ++ ++ LL + G + E
Sbjct: 463 RNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM--------LLDNIYTPEGIIPTLFGPERE 514
Query: 865 PAENIESSVR 874
+ I+ R
Sbjct: 515 KTQAIDGEFR 524
Score = 32.6 bits (74), Expect = 1.0
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 230 TDNFLSSYDILILDEVHERHLYGDFLLGVIS 260
+ + +Y+++++DE H G IS
Sbjct: 271 SSTRVPNYNLIVMDEAHFTDPCSVAARGYIS 301
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 169 bits (430), Expect = 1e-47
Identities = 50/134 (37%), Positives = 79/134 (58%), Gaps = 9/134 (6%)
Query: 19 FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA 78
Q E+ L I + + LPV +++ EI++ + + VVII G TGCGK+TQ+PQ+++
Sbjct: 41 MYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDD 100
Query: 79 GFQ-------RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE-KHRREKTKIVF 130
Q I TQPRRI+ +S+++RVA+E + GY +RFE R I+F
Sbjct: 101 FIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMF 160
Query: 131 ITEGLLLRQ-DSGL 143
T G+LLR+ ++G+
Sbjct: 161 CTVGVLLRKLEAGI 174
Score = 87.3 bits (217), Expect = 3e-19
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 314 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
+ + +++DEIHER ++ DFLL V++ ++ + EV+I+LMSATI+ +F YF
Sbjct: 171 EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN- 229
Query: 374 AKIIKV 379
II+V
Sbjct: 230 CPIIEV 235
Score = 87.0 bits (216), Expect = 5e-19
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
+ + +++DEIHER ++ DFLL V++ ++ + EV+I+LMSATI+ +F YF
Sbjct: 171 EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228
Score = 46.1 bits (110), Expect = 3e-05
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 231 DNFLSSYDILILDEVHERHLYGDFLLGVI 259
+ + +I+DE+HER + DFLL V+
Sbjct: 171 EAGIRGISHVIVDEIHERDINTDFLLVVL 199
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 175 bits (444), Expect = 3e-47
Identities = 55/327 (16%), Positives = 98/327 (29%), Gaps = 57/327 (17%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
++ + +Y++ ++DE H G I+ S + I M+AT
Sbjct: 84 KLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIE-TRVSMGDAGAIFMTATP-------- 134
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
PG PI++ + +K + I G +
Sbjct: 135 ----------PGTTEAFPPSNSPIIDEETRIPDK----AWNSGYEWI-----TEFDGRTV 175
Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
F+ I + + I Q+ G VL L+ E + +++T+I
Sbjct: 176 WFVHSIKQGAEIGTCLQK-----AGKKVLYLNRKTFESEYPK----CKSEKWDFVITTDI 226
Query: 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT--GPGVC 547
+E V+D K + + ++S I+ ASA QR+GR GR G
Sbjct: 227 SEMGANFK-ADRVIDPRKTIK-PILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDI 284
Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
Y S E R + L + + +
Sbjct: 285 YAYSGNVSSDNEGHVSWTEAR--------MLLDNVHVQGGVVAQLYTPE-----REKTEA 331
Query: 608 LTQHGAIDSKERVTSLGRFLS--DLPV 632
+ + +R + DLPV
Sbjct: 332 YEGEFKLKTNQRKV-FSELIRTGDLPV 357
Score = 78.3 bits (193), Expect = 5e-15
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 11/90 (12%)
Query: 53 KERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYS 109
K + ++ G GK+ ++ LV+ R P R+ + + + E
Sbjct: 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRGEP----- 55
Query: 110 NLVGYQ-IRFEKHRREKTKIVFITEGLLLR 138
+ Y + R + F+
Sbjct: 56 --IRYMTPAVQSERTGNEIVDFMCHSTFTM 83
Score = 48.3 bits (115), Expect = 1e-05
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN 1167
+ +Y++ ++DE H G I+ S + I M+AT
Sbjct: 87 QGVRVPNYNLYIMDEAHFLDPASVAARGYIE-TRVSMGDAGAIFMTATPP 135
Score = 32.5 bits (74), Expect = 1.2
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 230 TDNFLSSYDILILDEVHERHLYGDFLLGVIS 260
+ +Y++ I+DE H G I
Sbjct: 87 QGVRVPNYNLYIMDEAHFLDPASVAARGYIE 117
Score = 30.6 bits (69), Expect = 4.0
Identities = 11/94 (11%), Positives = 19/94 (20%), Gaps = 16/94 (17%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
G Y S E R + L + +
Sbjct: 278 PEKLGDIYAYSGNVSSDNEGHVSWTEAR--------MLLDNVHVQGGVVAQLYTPE---- 325
Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLS--DLPV 900
+ + + +R + DLPV
Sbjct: 326 -REKTEAYEGEFKLKTNQR-KVFSELIRTGDLPV 357
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 171 bits (436), Expect = 5e-46
Identities = 69/335 (20%), Positives = 112/335 (33%), Gaps = 61/335 (18%)
Query: 304 LLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINI 363
L H + + N + +Y++ V+DE H G I E I M+AT
Sbjct: 100 LTH---RLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIA-TKVELGEAAAIFMTATP-- 153
Query: 364 ELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRT 423
PG P PI +L ++ Y I
Sbjct: 154 ----------------PGTTDPFPDSNAPIHDLQDEIPDRAWSSGYEWI---------TE 188
Query: 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKC 483
G + F++ + + I Q +K V+ L+ E + G
Sbjct: 189 YAGKTVWFVASVKMGNEIAMCLQRAGKK-----VIQLNRKSYDTEYPK----CKNGDWDF 239
Query: 484 IVSTNIAETSITIDGIRFVVDSGK--VKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
+++T+I+E V+D K + + ++ I+ ASA QR+GR GR
Sbjct: 240 VITTDISEMGANFG-ASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGR 298
Query: 542 T--GPGVCYRLYSE--EQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 597
G Y E S LA ++ +I +L + M G V + E
Sbjct: 299 NPNQVGDEYHYGGATSEDDSNLAHWTEAKI--------MLDNIHMPNGLVAQLYGPEREK 350
Query: 598 AENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPV 632
A ++ R + K+ L R +DLPV
Sbjct: 351 AFTMDGEYRLRG-----EEKKNFLELLR-TADLPV 379
Score = 78.7 bits (194), Expect = 4e-15
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACISLSK 98
Q + + + K ++ ++ G GK+ +I +++ R A P R+
Sbjct: 9 QMGRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVA----A 64
Query: 99 RVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLLR 138
+A E L V YQ ++ + + + L
Sbjct: 65 EMA-EALRGLP--VRYQTSAVQREHQGNEIVDVMCHATLTH 102
Score = 46.0 bits (109), Expect = 7e-05
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 1117 AADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 1166
+ N + +Y++ V+DE H G I E I M+AT
Sbjct: 105 MSPNRVPNYNLFVMDEAHFTDPASIAARGYIA-TKVELGEAAAIFMTATP 153
Score = 30.6 bits (69), Expect = 4.0
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 229 ATDNFLSSYDILILDEVHERHLYGDFLLGVIS 260
+ N + +Y++ ++DE H G I+
Sbjct: 105 MSPNRVPNYNLFVMDEAHFTDPASIAARGYIA 136
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 169 bits (429), Expect = 1e-43
Identities = 46/295 (15%), Positives = 91/295 (30%), Gaps = 46/295 (15%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
+ + + +Y++ V+DE H G I + + E I M+AT
Sbjct: 323 RLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAG-EAAAIFMTATP-------- 373
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
PG P P+ S ++ + I G +
Sbjct: 374 ----------PGTSDPFPDTNSPV----HDVSSEIPDRAWSSGFEWI-----TDYAGKTV 414
Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
F++ + + I + Q G V+ L+ + D + G +++T+I
Sbjct: 415 WFVASVKMSNEIAQCLQR-----AGKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDI 465
Query: 490 AETSITIDGIRFVVDSG--KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
+E R V+D + + ++ I+ ASA QR+GR GR +
Sbjct: 466 SEMGANFGASR-VIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIG 524
Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
+ S + ++ +L + L + +
Sbjct: 525 DEYHYGGGTS-----EDDTMLAHWTEAKILLDN-IHLPNGLVAQLYGPERDKTYT 573
Score = 70.0 bits (171), Expect = 4e-12
Identities = 14/132 (10%), Positives = 41/132 (31%), Gaps = 17/132 (12%)
Query: 12 LLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQI 71
L + S +++ + +P A + + K ++ ++ G GK+ +I
Sbjct: 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAY----NPEMLKKRQLTVLDLHPGAGKTRRI 258
Query: 72 PQYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQI--RFEKHRREKT 126
+++ R A P R+ +++ + + ++
Sbjct: 259 LPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGL--------PVRYLTPAVQREHSGNE 310
Query: 127 KIVFITEGLLLR 138
+ + L
Sbjct: 311 IVDVMCHATLTH 322
Score = 43.8 bits (103), Expect = 5e-04
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 1117 AADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 1165
+ + +Y++ V+DE H G I + + E I M+AT
Sbjct: 325 MSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAG-EAAAIFMTAT 372
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 161 bits (410), Expect = 1e-42
Identities = 45/263 (17%), Positives = 84/263 (31%), Gaps = 43/263 (16%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
+ + +++V+++DE H G + E ILM+AT
Sbjct: 90 RMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARAN-ESATILMTATP-------- 140
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
PG I ++ + P+ I ++
Sbjct: 141 ----------PGTSDEFPHSNGEIEDVQT----DIPSEPWNTGHDWI-----LADKRPTA 181
Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
F+ I + + + ++ G V+ L+ E + I++T+I
Sbjct: 182 WFLPSIRAANVMAASLRK-----AGKSVVVLNRKTFEREYPT----IKQKKPDFILATDI 232
Query: 490 AETSITIDGIRFVVDSG-KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT--GPGV 546
AE + + V+D K + D K++ IS +SA QR+GR GR G
Sbjct: 233 AEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGD 291
Query: 547 CYRLYSE--EQYSLLAEYSTPEI 567
Y E + + +
Sbjct: 292 SYYYSEPTSENNAHHVCWLEASM 314
Score = 74.5 bits (183), Expect = 9e-14
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 12/95 (12%)
Query: 49 DTVLKER-VVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACISLSKRVAYET 104
+LK+ ++ G GK+ + ++ R P R+ + +
Sbjct: 2 SHMLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLD 61
Query: 105 LSQYSNLVGYQIR-FEKHRREKTKIVFITEGLLLR 138
V + + F H + I + L
Sbjct: 62 -------VKFHTQAFSAHGSGREVIDAMCHATLTY 89
Score = 46.8 bits (111), Expect = 4e-05
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 1116 VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN 1167
+ + +++V+++DE H G + E ILM+AT
Sbjct: 91 MLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARAN-ESATILMTATPP 141
Score = 32.1 bits (73), Expect = 1.3
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 228 VATDNFLSSYDILILDEVHERHLYGDFLLGVIS 260
+ + +++++I+DE H G +
Sbjct: 91 MLEPTRVVNWEVIIMDEAHFLDPASIAARGWAA 123
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 163 bits (413), Expect = 1e-41
Identities = 40/247 (16%), Positives = 70/247 (28%), Gaps = 44/247 (17%)
Query: 314 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
+YD+++ DE H +G + + ++L +AT + + N
Sbjct: 313 GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIE 372
Query: 374 AKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMS 433
+ G P + PI G LIF
Sbjct: 373 EVALSNTGE-IPFYGKAIPIEA---------------------------IRGGRHLIFCH 404
Query: 434 GISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETS 493
+ + G + + L + P +V+T+ T
Sbjct: 405 SKKKCDELAAKLSG-----LGINAVAYYRGLDVSVI-------PTIGDVVVVATDALMTG 452
Query: 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW---ISKASAEQRKGRAGRTGPGVCYRL 550
T D V+D + D + + E S QR+GR GR G+ +
Sbjct: 453 YTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFV 511
Query: 551 YSEEQYS 557
E+ S
Sbjct: 512 TPGERPS 518
Score = 86.2 bits (213), Expect = 4e-17
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 6/112 (5%)
Query: 29 MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQP 88
++ ET PV +V + TG GKST++P G ++ P
Sbjct: 207 VESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG-YKVLVLNP 265
Query: 89 RRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQD 140
A + ++ + + +R + + T G L
Sbjct: 266 SVAATLGFGAYMSKAHGIDPN--IRTGVRT---ITTGAPVTYSTYGKFLADG 312
Score = 50.0 bits (119), Expect = 5e-06
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 1166
+YD+++ DE H +G + + ++L +AT
Sbjct: 313 GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATP 360
Score = 36.9 bits (85), Expect = 0.058
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 8/63 (12%)
Query: 215 VEFRLKHDPKQVQVATD--------NFLSSYDILILDEVHERHLYGDFLLGVISPPLHCG 266
R V +T +YDI+I DE H +G +
Sbjct: 289 TGVRTITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETA 348
Query: 267 GEI 269
G
Sbjct: 349 GAR 351
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase,
mRNA processing, splicing, nucleotide-binding, nucleus,
phosphoprotein, SPLI; 2.10A {Homo sapiens}
Length = 270
Score = 112 bits (282), Expect = 2e-27
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 6/157 (3%)
Query: 582 MGLGDVRKFPFLEAP-PAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKML 640
MG F P E + +++ L GA+D + +T LGR +++ P++ L KML
Sbjct: 1 MGDRGPE-FELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKML 59
Query: 641 VFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWL 700
+ + +L++ ++LSVQ+ F + + + + GD LT+L Y W
Sbjct: 60 IMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW- 118
Query: 701 GVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVL 737
K+ S WC I+ + +R Q ++
Sbjct: 119 ---KNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIM 152
Score = 61.1 bits (149), Expect = 5e-10
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 850 MGLGDVRKFPFLEAP-PAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKML 908
MG F P E + +++ L GA+D + +T LGR +++ P++ L KML
Sbjct: 1 MGDRGPE-FELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKML 59
Query: 909 VFGSMFH 915
+
Sbjct: 60 IMSVHLG 66
Score = 39.5 bits (93), Expect = 0.004
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 1029 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML----LLDLALNFVHHSE 1084
GA+D + +T LGR +++ P++ L KML+ + ML +L + F +
Sbjct: 30 LGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKD 89
Query: 1085 EEEEEEA 1091
++ +
Sbjct: 90 KQALADQ 96
Score = 39.5 bits (93), Expect = 0.005
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 929 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 965
GA+D + +T LGR +++ P++ L KML+
Sbjct: 30 LGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLG 66
Score = 39.5 bits (93), Expect = 0.005
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 979 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFH 1015
GA+D + +T LGR +++ P++ L KML+
Sbjct: 30 LGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLG 66
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 80.7 bits (198), Expect = 3e-15
Identities = 116/733 (15%), Positives = 204/733 (27%), Gaps = 231/733 (31%)
Query: 288 HERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 347
H H H DF G + + V D F+ ++D + + D ++
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDC--------KDVQ-DMPKSIL----- 46
Query: 348 STAEVKIILMSATINIE----LFHTYFNRIAKIIK--VPGRLYPIQLEYHPIVELDRTKS 401
S E+ I+MS + LF T ++ ++++ V L ++ Y ++ K+
Sbjct: 47 SKEEIDHIIMSKD-AVSGTLRLFWTLLSKQEEMVQKFVEEVL---RINYKFLMS--PIKT 100
Query: 402 EKLDP-GPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPL 460
E+ P + D+ Y D +F ++ R Q Y + L
Sbjct: 101 EQRQPSMMTRMYIEQRDRLY-----NDNQVFAKY-----NVSR-LQPYLK---------L 140
Query: 461 HSTL-SLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKM 519
L L V G K T + +D +M + +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGK---------TWVALDVCL---SYKVQCKMDFKI---- 184
Query: 520 STLQEFWIS-------KASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSI 572
FW++ + E + + P R L E+RR+
Sbjct: 185 -----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 573 -----DSLL-LSLVC-------MGLG--------DVRKFPFLEAPPAENI--ESSVRSLT 609
+ LL L V L + FL A +I + +LT
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 610 QHGAIDSKERVTSLGRFL----SDLPVDI----PLGKMLVFGSMFHQIDTVLSLAAVLSV 661
E + L ++L DLP ++ P LS+ A
Sbjct: 300 P------DEVKSLLLKYLDCRPQDLPREVLTTNPR---------------RLSIIAESIR 338
Query: 662 QSPFTNRAFRDPDCETARKELES--NHGDPLTVLNAYKEWLGV-KKD-----RVRSKKWC 713
T ++ +C+ +ES N +P + L V + S W
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-LSVFPPSAHIPTILLSLIWF 397
Query: 714 KRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSR---ERALR-HGEIKLLQ 769
+ V KL SL + E + +
Sbjct: 398 DVIKSDVMVV--VNKLHKY-------------------SLVEKQPKESTISIPS---IYL 433
Query: 770 AIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLE------SRTGPGVCYRLYSEEQ 823
+K K E R ++ + Y I + + ++ S G + L + E
Sbjct: 434 ELKVKLENEYALHRSIV---DHYNIPKTFDSDDLIPPYLDQYFYSHIG----HHLKNIEH 486
Query: 824 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEA-----PPAENIESSVRSL-- 876
+ + R V +D F FLE A N S+ +
Sbjct: 487 PERMTLF-----RMVFLD----------------FRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 877 ---------TQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
+ V + FL + ++ K D LL +AL
Sbjct: 526 QLKFYKPYICDNDPKYE-RLVNAILDFLPKIEENLICSKYT---------D---LLRIAL 572
Query: 928 NF---GAIDSKER 937
+ +
Sbjct: 573 MAEDEAIFEEAHK 585
Score = 62.9 bits (152), Expect = 8e-10
Identities = 88/546 (16%), Positives = 162/546 (29%), Gaps = 173/546 (31%)
Query: 5 LYEEWK-------LLLRTYLDFKQK-----EKFS--------TLMKIRETQNSLPVAQYK 44
L K ++ R Y++ + + + F+ +K+R+ L A+
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN- 152
Query: 45 QEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ--RIACTQPRRIACISLSK-RVA 101
V+I G G GK+ + ++ C +I ++L
Sbjct: 153 ------------VLIDGVLGSGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 102 YETLSQYSNLV-----GYQIRFEKHRREKTKIVFITEGL--LLRQ----DSGLITDIPGP 150
L L+ + R + K +I I L LL+ + L+
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---- 251
Query: 151 DASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESM 210
+ + A K+L R K L A I + E
Sbjct: 252 NVQNAKAWNAFNLS-CKIL-LTTRFKQVTD-----FLSAATTTHISLDHHSMTLTPDEVK 304
Query: 211 D--ANEVEFRLKHDPKQVQ-----------------VAT-DNFL------------SSYD 238
++ R + P++V +AT DN+ SS +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 239 ILILDEVHERHLYGD---FLLGV-ISPPLHCGGEIVAADYFLSSYDV-LVLDEIHER--- 290
+L E R ++ F I L ++ D + DV +V++++H+
Sbjct: 365 VLEPAEY--RKMFDRLSVFPPSAHIPTILLS---LIWFD--VIKSDVMVVVNKLHKYSLV 417
Query: 291 ---------HLHGDFLLGVIKCL----LHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337
+ +L +K LH ++ V N ++D D++ +L F
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFD---SDDLIPPYLDQYF 473
Query: 338 L--LGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI--------AKIIKVPGRLYPIQ 387
+G H + + E T F + KI
Sbjct: 474 YSHIG-----HH---------LKNIEHPERM-TLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 388 LEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTER--GDVLIFMSGISEI------S 439
+ + +L K PYI P+ ER +L F+ I E +
Sbjct: 519 SILNTLQQLKFYK-------PYIC------DNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 440 SIVRAA 445
++R A
Sbjct: 566 DLLRIA 571
Score = 53.7 bits (128), Expect = 4e-07
Identities = 105/676 (15%), Positives = 199/676 (29%), Gaps = 202/676 (29%)
Query: 724 YEVTKLRSQFKQVLGD--SGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 781
+E + + Q+K +L + + D + L EI + I K A
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS-ILSKEEIDHI--IMSKDAVSGTL 65
Query: 782 R---RKMLKADNAYE--IEEEEEEEEG---ERLESRT-GPGVCYRLYSEEQYSLLAEYST 832
R + K + + +EE +++ P + R+Y E++ L Y+
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL---YND 122
Query: 833 PEI---RRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHG--------- 880
++ VS L L R+ LE PA+N+ G
Sbjct: 123 NQVFAKYNVSRLQPYLKL--------RQ-ALLELRPAKNV-------LIDGVLGSGKTWV 166
Query: 881 AID--SKERVT----------TLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
A+D +V L + P + +ML + +QID + +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKN--CNSPETVL--EMLQ--KLLYQIDPNWT---SRS 217
Query: 929 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLD--------LALNFG 980
+ + K R+ S+ L L P L L+L A N
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCL------------LVLLNVQNAKAWNAFNLS 265
Query: 981 AIDSKERVTSLGRFLSD-----LPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSK 1035
K +T+ + ++D I L + LL L+
Sbjct: 266 ---CKILLTTRFKQVTDFLSAATTTHISLDHHS---MTLTPDEVKSLLLKYLDCRP---- 315
Query: 1036 ERVTSLGRFLSDLPVDI----PLGKMLVFGSMFHQ-IDTMLLLDLALNFVHHSEEEEEEE 1090
DLP ++ P ++ + + T + H ++
Sbjct: 316 ----------QDLPREVLTTNPR-RLSIIAESIRDGLAT-------WDNWKHVNCDKLTT 357
Query: 1091 AGER-LESMDANEVEFRLKHD----PKQVQVAAD------NFLSSYDV-LVLDEIHER-- 1136
E L ++ E ++ P + + DV +V++++H+
Sbjct: 358 IIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 1137 ----------HLHGDFLLGVIKCL----LHSTAEVKIILMSATINIELFHT--------- 1173
+ +L +K LH + I+ I
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 1174 YF-NRIAKDLLSGSTARSHKDVTIL------------KVILASGLYPQVAIGDEFNTSET 1220
YF + I L + +T+ K+ S A G NT +
Sbjct: 472 YFYSHIGHHL---KNIEHPERMTLFRMVFLDFRFLEQKIRHDS--TAWNASGSILNTLQQ 526
Query: 1221 VKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVY 1280
+K K ++ + P R+ + I+D L N+I SK+ L+
Sbjct: 527 LK------FYKPYICDN-------DPKYERL-VNAILD---FLPKIEENLICSKYTDLLR 569
Query: 1281 MSLLETSKPFLVNCLR 1296
++L+ + +
Sbjct: 570 IALMAEDEAIFEEAHK 585
Score = 48.7 bits (115), Expect = 2e-05
Identities = 54/417 (12%), Positives = 111/417 (26%), Gaps = 160/417 (38%)
Query: 1081 HHSEEEEEEEAGERLESMDANEVEFRLKHDPKQ-VQVAADNFLSSYDVLVLDEIHERHLH 1139
HH + E GE ++ K + V D F+ ++D + +
Sbjct: 1 HHHHHHMDFETGE-------------HQYQYKDILSVFEDAFVDNFDC--------KDVQ 39
Query: 1140 GDFLLGVIKCLLHSTAEVKIILMSATIN------IELFHTYFNRIAKDLLSGSTARSHK- 1192
D ++ S E+ I+MS + + + + ++K
Sbjct: 40 -DMPKSIL-----SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 1193 -------------DVTILKVILASGLYPQVAIGDEFNTS-----ETVKEALFHCKDKGFV 1234
+T + + LY + ++N S +++AL + V
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 1235 SLH------------------------PFSVF-------TSQPDVLRISED--------- 1254
+ F +F S VL + +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 1255 -DIVDPPPGLKLPGRNVISSKHQLLVYM----SLL--------ETSKPFLVNCLRMPALQ 1301
D +KL ++ + +LL LL + F ++C +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC------K 267
Query: 1302 TLLL----------------FSSAIHTNSDFT----RLVFDSWIEVFV-----------P 1330
LL S H + T + + +++ P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 1331 L---------QEAKSTADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYR 1378
++ +T D +H L + S S+ L A+ + M+
Sbjct: 328 RRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIES------SLNVLEPAEYRKMFD 376
Score = 45.2 bits (106), Expect = 2e-04
Identities = 97/669 (14%), Positives = 180/669 (26%), Gaps = 232/669 (34%)
Query: 757 ERALRHGEI--KLLQAIKR----KKAEEAPKRRKMLKADNAYEIEEEEEEEEGER----- 805
E ++ +I A K ++ P + +L + I ++ G
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMP--KSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 806 LESRTGPGVCYRLYSE---EQYSLLA-----EYSTPEIRRVSIDSLLLSLVCMGLGDVRK 857
L S+ V + E Y L E P + L D +
Sbjct: 71 LLSKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL----YNDNQV 125
Query: 858 FPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQI 917
F + ++L + + + V G +L G
Sbjct: 126 FAKYNVSRLQPYLKLRQALLE---LRPAKNVLIDG--------------VLGSGK----- 163
Query: 918 DTMLLLDLALNFGAIDSKE-RV--TSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLD 974
T + LD+ L++ + ++ +L + P + +ML + +QID
Sbjct: 164 -TWVALDVCLSYKVQCKMDFKIFWLNLKN--CNSPETVL--EMLQ--KLLYQIDPNWT-- 214
Query: 975 LALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLD--------LA 1026
+ + + + K R+ S+ L L P L L+L A
Sbjct: 215 -SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL------------LVLLNVQNAKAWNA 261
Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML---LLDLALNFVHHS 1083
N K +T+ RF D S+ H T+ + L L ++
Sbjct: 262 FNLS---CKILLTT--RFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 1084 EEEEEEEAGERLESMDANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFL 1143
++ E L +P
Sbjct: 315 PQDLPREV---------------LTTNP------------------------------RR 329
Query: 1144 LGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVTILKVILAS 1203
L +I + AT + + + D L+ TI++ L
Sbjct: 330 LSIIAESIRD--------GLATWD------NWKHVNCDKLT----------TIIESSLNV 365
Query: 1204 GLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGL 1263
L P E+ +F SVF P I P L
Sbjct: 366 -LEP-----AEY-------RKMFD----------RLSVF--PPSA------HI--PTILL 392
Query: 1264 -----KLPGRNVISSKHQLLVYMSLLET-SKPFLVNCLRMPALQTLLLFSS----AIH-- 1311
+ +V+ ++L Y SL+E K + +P++ L A+H
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTI---SIPSIYLELKVKLENEYALHRS 448
Query: 1312 -TNSDFTRLVFDSWIEVFVPLQEAKSTADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLA 1370
+ FDS +P +H+ + ++ +
Sbjct: 449 IVDHYNIPKTFDSD--DLIPPYL--------------------DQYFYSHIGHHLKNIEH 486
Query: 1371 ADLKTMYRR 1379
+ T++R
Sbjct: 487 PERMTLFRM 495
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.9 bits (168), Expect = 1e-11
Identities = 106/624 (16%), Positives = 176/624 (28%), Gaps = 213/624 (34%)
Query: 153 SLSSRERALRHGEIK---LLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLES 209
+ S+R L HG ++ L+ A + L+
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQ-------LQE-------------------- 35
Query: 210 MDANEVEFRLKHDPKQVQVATDNFLSSYDILILDE-VHERHLYGDFLLGVISPPLHCGGE 268
+F K + T+ F + DE L G F LG +S + +
Sbjct: 36 ------QFN-----KILPEPTEGFAAD------DEPTTPAELVGKF-LGYVSSLVE-PSK 76
Query: 269 IVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL--HSTVEVAADNFLSSY-DVLVL 325
+ D L+ L L E +L G+ + + LL + T V + +Y ++
Sbjct: 77 VGQFDQVLN----LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 326 DEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI-----NIELFHTYFNRIAKIIKVP 380
+ L + +++ I N + YF +
Sbjct: 133 AKRPFDKKSNSALFRAV-----GEGNAQLV----AIFGGQGNTD---DYFEELRD----- 175
Query: 381 GRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERG-DVLIFMSGISEI 438
LY YH +V L + +E L IR +K + +G ++L ++ S
Sbjct: 176 --LYQT---YHVLVGDLIKFSAETLS--ELIRTTLDAEKVFT---QGLNILEWLENPSNT 225
Query: 439 SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA---------PEGLRKCIVSTNI 489
++Y I PL + L HY P LR +
Sbjct: 226 PD-----KDYLLSIP--ISCPLIGVIQLA------HYVVTAKLLGFTPGELRSYLKG--- 269
Query: 490 AETSITIDGIRFVV-------DSGKVKEMSYDVTAKMSTLQEFWI------------SKA 530
+ G+ V DS E + K T+ F+I
Sbjct: 270 --ATGHSQGL--VTAVAIAETDSW---ESFFVSVRKAITVL-FFIGVRCYEAYPNTSLPP 321
Query: 531 SAEQRKGRAGRTGPG---VCYRLYSEEQYSLLAEYST--PEIRRVSIDSLL--------- 576
S + P L E+ + + ++ P ++V I SL+
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVS 380
Query: 577 ---LSLVCMGLG-DVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPV 632
SL GL +RK +AP + Q S+ ++ RF LPV
Sbjct: 381 GPPQSLY--GLNLTLRK---AKAPSGLD---------QSRIPFSERKLKFSNRF---LPV 423
Query: 633 DIPLGKMLVFGSMFH---------QIDTVLSLAAV--------LSVQSPFTNRAFRDPDC 675
P FH I+ L V + V F R
Sbjct: 424 ASP----------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS- 472
Query: 676 ETARKELESNHGDPLTVLNAYKEW 699
+ D + L W
Sbjct: 473 ----GSISERIVDCIIRLPVK--W 490
Score = 60.4 bits (146), Expect = 5e-09
Identities = 100/588 (17%), Positives = 167/588 (28%), Gaps = 221/588 (37%)
Query: 242 LDEVHERHL---YGDF---LLGVISPPLHCGGEIVAADYFLSS----YDVLVLDE--IHE 289
+D R L +G LL + + F + D+
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLL--VPTASFFIAS-QLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 290 RHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHG-DFLLGVIKCLLHS 348
L G FL G + L+ + D L+ L L E +L G D +H+
Sbjct: 58 AELVGKFL-GYVSSLVEPSKVGQFDQVLN----LCLTEFENCYLEGND---------IHA 103
Query: 349 TAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGP 408
A A + E T + ++IK
Sbjct: 104 LA--------AKLLQEN-DTTLVKTKELIKN----------------------------- 125
Query: 409 YIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKS------QGWIVLPLHS 462
YI + + + + S++ RA E N + QG ++
Sbjct: 126 YITARIMAKRPFDKKSN-------------SALFRAVGEGNAQLVAIFGGQG------NT 166
Query: 463 TLSLEE-QDRVFHYAPEGLRKCIVSTNIAETSITIDG-IRFVVDSGKVKEMSYDVTAKMS 520
EE +D Y +V I ++ T+ IR +D+ KV ++
Sbjct: 167 DDYFEELRDLYQTYHV------LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE--- 217
Query: 521 TLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLV 580
W+ S P + Y L S P I + + +++
Sbjct: 218 -----WLENPSNT----------PD--------KDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 581 CMGLGDVRKFPFLEAPPAENIESSVRSLTQHG-------AI---DSKERVTSLGRFLSDL 630
+G P E + S ++ T H AI DS E
Sbjct: 255 LLGF-----------TPGE-LRSYLKGATGHSQGLVTAVAIAETDSWE------------ 290
Query: 631 PVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC----ETARKELESNH 686
S F + +++ + V+ A+ P+ LE+N
Sbjct: 291 -------------SFFVSVRKAITVLFFIGVRC---YEAY--PNTSLPPSILEDSLENNE 332
Query: 687 GDP---LTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQF---KQV---L 737
G P L++ + +++V+ V K S KQV L
Sbjct: 333 GVPSPMLSIS-------NLTQEQVQDY---------------VNKTNSHLPAGKQVEISL 370
Query: 738 --GDSGLITDIPGPDASLSSRERALR--HGEIKLLQAIKRKKAEEAPK 781
G L+ + GP SL LR L Q+ + +E K
Sbjct: 371 VNGAKNLV--VSGPPQSLYGLNLTLRKAKAPSGLDQS-RIPFSERKLK 415
Score = 59.7 bits (144), Expect = 7e-09
Identities = 102/621 (16%), Positives = 174/621 (28%), Gaps = 234/621 (37%)
Query: 442 VRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF------HYAPEGLRKCIVSTNIAETSIT 495
V + E ++ Q VL L L E + + H + + + E T
Sbjct: 68 VSSLVEPSKVGQFDQVL----NLCLTEFENCYLEGNDIH--------ALAAKLLQENDTT 115
Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE-- 553
+ + ++ +Y +TA++ + F SA R G +L +
Sbjct: 116 LVKTKELI-------KNY-ITARIMAKRPFDKKSNSALFRAVGEGNA------QLVAIFG 161
Query: 554 -----EQYSLLAE----YST--PEIRRV--SIDSLLLSLVCMGLGDVRKFP-------FL 593
+ Y E Y T + + L L+ L + F +L
Sbjct: 162 GQGNTDDY--FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 594 E----APPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQI 649
E P + + S S G V L ++ + LG G + +
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIG-------VIQLAHYVVTAKL---LG--FTPGELRSYL 267
Query: 650 DTVLS-----LAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKK 704
+ AV ++ + +F + RK + VL ++GV
Sbjct: 268 KGATGHSQGLVTAVAIAETD-SWESFF----VSVRKAIT--------VLF----FIGV-- 308
Query: 705 DRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGE 764
R Y T L + ++ +P P LS + +
Sbjct: 309 ---RC-----------YEAYPNTSLPPSILEDSLENN--EGVPSP--MLS-----ISNLT 345
Query: 765 IKLLQAIKRKKAEEAPKRRKM---LK-ADNAYEIEEEEEEEEGERLESRTGPGVCYRLYS 820
+ +Q K P +++ L + +GP
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV---------------SGP-------- 382
Query: 821 EEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHG 880
P+ S+ L L+L RK +AP + Q
Sbjct: 383 ------------PQ----SLYGLNLTL--------RK---AKAPSGLD---------QSR 406
Query: 881 AIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTS 940
S+ ++ RF LPV P FH + LL+ A + D + S
Sbjct: 407 IPFSERKLKFSNRF---LPVASP----------FH---SHLLVP-ASDLINKDLVKNNVS 449
Query: 941 LGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSD--- 997
D+ IP V+ DT F D + S+ + D
Sbjct: 450 FNA--KDI--QIP-----VY-------DT---------FDGSDLRVLSGSISERIVDCII 484
Query: 998 -LPVD------IPLGKMLVFG 1011
LPV +L FG
Sbjct: 485 RLPVKWETTTQFKATHILDFG 505
Score = 59.7 bits (144), Expect = 8e-09
Identities = 113/675 (16%), Positives = 191/675 (28%), Gaps = 289/675 (42%)
Query: 872 SVRSLT-QHGAIDSKERV-TTLG--------RFLSDLPV--------DIP------LGKM 907
S R LT HG+++ V T +F LP D P +GK
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 908 LVFGSMFHQID------TMLLLDLALN-FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVF 960
L + S ++ +L+L L F E +L DI
Sbjct: 65 LGYVS--SLVEPSKVGQFDQVLNLCLTEF------EN-----CYLEG--NDI-------- 101
Query: 961 GSMFHQIDTMLLLDLALNFGAIDSKERVTS--LGRFLSDLPVDIP----L------GK-- 1006
H + LL + +KE + + R ++ P D L G
Sbjct: 102 ----HALAAKLLQENDTTLVK--TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 1007 -MLVFGSMFHQIDTMLLLDLALNFGAIDS--KERVTSLGRFLSDLPVDIPLGKMLVFGSM 1063
+ +FG Q G D +E L DL
Sbjct: 156 LVAIFGG---Q-------------GNTDDYFEE--------LRDL--------------- 176
Query: 1064 FHQIDTMLLLDLALNFVHHSEEEEEEEAGERLESMDANEVEFRLKHDPKQVQVAA----- 1118
+Q +L+ DL + + E L + ++ K + + +
Sbjct: 177 -YQTYHVLVGDLI------------KFSAETLSELIRTTLDAE-KVFTQGLNILEWLENP 222
Query: 1119 -----DNFLSSYDVLVLDEIHERHLHGDF-LLGVIKCLLHSTAEVKIILMSATINIELFH 1172
++L S + L+GVI+ L H K++ + EL
Sbjct: 223 SNTPDKDYLLSIPI-------------SCPLIGVIQ-LAHYVVTAKLLGFTPG---ELR- 264
Query: 1173 TYFNRIAKDLLSGSTARSHKDVTILKVILASGLYPQVAI-----GDEF--NTSETVKEAL 1225
L G+T S + + + A VAI + F + + + L
Sbjct: 265 --------SYLKGATGHS-QGL-----VTA------VAIAETDSWESFFVSVRKAI-TVL 303
Query: 1226 FHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPP-PGLKLPGRNVISSKHQLLVYMSLL 1284
F G + + P +L S ++ P P L + ++ Q+ Y++
Sbjct: 304 FFI---GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN----LTQEQVQDYVNKT 356
Query: 1285 ETSKPF-------LVNCLRM-----PALQTLLLFSSAIH-----TNSDFTRLVFD----- 1322
+ P LVN + P Q+L + + + D +R+ F
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPP-QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 1323 ---SWIEVFVP-----LQEAKST---------------------------ADVNQLEHSL 1347
++ V P L A +D+ L S+
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 1348 TRDLVQFM------------SSATHLAYSIRRLLAADLKTMYRRTGAESGVPGSNPFVAE 1395
+ +V + ATH+ L D G PG +
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHI------L---DF-------G-----PGGASGLG- 513
Query: 1396 FPMVVEETLG-GVRV 1409
+ G GVRV
Sbjct: 514 -VLTHRNKDGTGVRV 527
Score = 42.0 bits (98), Expect = 0.002
Identities = 93/560 (16%), Positives = 161/560 (28%), Gaps = 186/560 (33%)
Query: 752 SLSSRERALRHGEIK---LLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLES 808
+ S+R L HG ++ L+ A + L+ + E E +
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQ-------LQEQFNKILPEPTEGFAAD---- 51
Query: 809 RTGPGVCYRLYSEEQYS---LLAEY------STPEIRRVSIDSLLLSLVCMGLGDVRKF- 858
+E + L+ ++ + D +L + +F
Sbjct: 52 ------------DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL-------TEFE 92
Query: 859 -PFLEAPPAENIESSVRSLTQHGAIDSKERVTTL-----GRFLSDLPVDIP----L---- 904
+LE +I + L Q + + R ++ P D L
Sbjct: 93 NCYLEG---NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 905 --GK---MLVFG------------SMFHQIDTMLLLDLALNFGAID-SKERVTSLGRFLS 946
G + +FG +Q +L+ DL I S E ++ L R
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL------IKFSAETLSELIRTTL 203
Query: 947 DLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIP--- 1003
D G ++ + L+ N D +L +P+ P
Sbjct: 204 DAEKVFTQG-----------LNILEWLENPSNTPDKD----------YLLSIPISCPLIG 242
Query: 1004 ---LGKMLVF--------GSMFHQID--TMLLLDL--ALNFGAIDSKERVTSLGRFLSDL 1048
L +V G + + T L A+ DS E F +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES------FFVSV 296
Query: 1049 PVDIPLGKMLVF-GSMFHQIDTMLLLDLALNFVHHSEEEEEEEAGERL--ESMDANEVEF 1105
I +L F G ++ L + + S E E L ++ +V+
Sbjct: 297 RKAI---TVLFFIGVRCYE--AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 1106 RL----KHDP--KQVQVA----ADNF------LSSYD-VLVLDEIH-------------E 1135
+ H P KQV+++ A N S Y L L + E
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 1136 RHL-------------HGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDL 1182
R L H L+ + + + + I I ++ T F+ DL
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT-FD--GSDL 468
Query: 1183 --LSGSTARSHKD-VTILKV 1199
LSGS + D + L V
Sbjct: 469 RVLSGSISERIVDCIIRLPV 488
Score = 38.1 bits (88), Expect = 0.025
Identities = 52/289 (17%), Positives = 96/289 (33%), Gaps = 104/289 (35%)
Query: 241 ILDEV--HERHLYGDFLLGVI--SPP---LHCGGE---IVAADYFLSSYDVL-------- 282
+ + H + YG +L ++ +P +H GGE + +Y ++ +
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 283 -VLDEIHER----HLHGDFLLGVIKCLLHST---------VEVAADNFLSSYDVLVLDEI 328
+ EI+E + K LL +T +E AA L S ++ D
Sbjct: 1705 KIFKEINEHSTSYTFRSE------KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD-- 1756
Query: 329 HERHLHGDFLLGVIKCLLHS---------TAEVKIILMSATINIELFHTYFNRIAKIIKV 379
G HS A+V MS + +++
Sbjct: 1757 -------ATFAG------HSLGEYAALASLADV----MS-----------IESLVEVVFY 1788
Query: 380 PGRLYPIQLEYHPIVELDRTKSE--KLDPGPYIRILS------IIDKKYPRTERGDVL-- 429
G +Q+ P EL R+ ++PG S ++++ RT G ++
Sbjct: 1789 RGMT--MQVAV-PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT--GWLVEI 1843
Query: 430 ---------IFMSGISEISSIVRAAQEYNE-KSQGWIVLPLHSTLSLEE 468
+G ++ ++ N K Q ++ L +LSLEE
Sbjct: 1844 VNYNVENQQYVAAG--DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 42.1 bits (98), Expect = 0.001
Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 26/207 (12%)
Query: 355 ILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYI---- 410
I + T + Y ++ + K ++ ++ + +
Sbjct: 286 IELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKM 345
Query: 411 -RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQ---GWIVLPLHSTLSL 466
++ II ++ R + +++F + IV + K++ G LS
Sbjct: 346 DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQ 405
Query: 467 EEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW 526
EQ + G +V+T++ E + + + VV Y+
Sbjct: 406 REQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV--------FYEPVP--------- 448
Query: 527 ISKASAEQRKGRAGRTGPGVCYRLYSE 553
S + QR+GR GR PG L ++
Sbjct: 449 -SAIRSIQRRGRTGRHMPGRVIILMAK 474
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 41.5 bits (96), Expect = 0.002
Identities = 78/631 (12%), Positives = 180/631 (28%), Gaps = 90/631 (14%)
Query: 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVA 101
Y+ E+ +K + II TGCGK T + + + ++ Q ++ + V
Sbjct: 16 NYQLELALPAMKGKNTIICAPTGCGK-TFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 74
Query: 102 ---YETLSQYSNLVGYQI----------RFEKHRREKTKIVFITEGLLL-------RQDS 141
S+Y GY++ + E I+ +T +L+
Sbjct: 75 EQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 134
Query: 142 GLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKA--DNAYEIEEEE 199
+ T + + +S++ L + P+ + + + +E
Sbjct: 135 SIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEA 194
Query: 200 EEEEGERLESMDANEVEFRLKH--DPKQVQVATDNFLSSYDILILDEVHERHLYG----D 253
+ + S+DA+ + + + +QV F + I D+ +
Sbjct: 195 LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTE 254
Query: 254 FLLGVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAA 313
L I L +I ++ Y+ ++ + + + +
Sbjct: 255 SLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTS 314
Query: 314 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
D L++ E D+L S + F +
Sbjct: 315 H-LRKYNDALIISEHARMKDALDYL-----KDFFSNVRAAGFDEIEQDLTQRFEEKLQEL 368
Query: 374 AKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMS 433
+ + P P K E L I+ ++Y ++F+
Sbjct: 369 ESVSRDPSNENP--------------KLEDL--------CFILQEEYHLNPETITILFVK 406
Query: 434 GISEISSIVRAAQEYNEKSQ-------GWIVLPLHSTLSLEEQDRVF-HYAPEGLRKCIV 485
+ + ++ + + S G ++ ++L Q + + G ++
Sbjct: 407 TRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILI 466
Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
+T++A+ I I V+ Y+ + Q +GR R
Sbjct: 467 ATSVADEGIDIAQCNLVI--------LYEYVG----------NVIKMIQTRGRG-RARGS 507
Query: 546 VCYRLYSE---EQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
C+ L S + + Y + + L + + + +
Sbjct: 508 KCFLLTSNAGVIEKEQINMYKEKMMNDSILR--LQTWDEAVFREKILHIQTHEKFIRDSQ 565
Query: 603 SSVRSLTQHGAIDSKERVTS-LGRFLSDLPV 632
+ + R L + +D+ V
Sbjct: 566 EKPKPVPDKENKKLLCRKCKALACYTADVRV 596
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 39.5 bits (91), Expect = 0.007
Identities = 70/549 (12%), Positives = 163/549 (29%), Gaps = 84/549 (15%)
Query: 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVA 101
Y+ E+ K + II TGCGK T + + + ++ C Q ++ + + ++
Sbjct: 7 NYQLELALPAKKGKNTIICAPTGCGK-TFVSLLICEHHLKKFPCGQKGKV--VFFANQIP 63
Query: 102 -----YETLSQYSNLVGYQIRFE----------KHRREKTKIVFIT----EGLLLRQDSG 142
S+Y +GY I +H E I+ +T L
Sbjct: 64 VYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIP 123
Query: 143 LITDIP---GPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEE 199
++ + +S+ + L + + P+ + + + + E
Sbjct: 124 SLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAE 183
Query: 200 EEEEG--ERLESMDANEVEFRLKHDP----------KQVQVATDNFLSSYDILILDEVHE 247
E + + ++DA+ + + K + +++ +I + E
Sbjct: 184 EAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKE 243
Query: 248 RHLYGDFLLGVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHS 307
+S L +I ++ Y+ ++ + + +
Sbjct: 244 TEKL----AKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKA 299
Query: 308 TVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 367
+ D L++ E + ++L K H E + F
Sbjct: 300 LFLYTSH-LRKYNDALIISEDAQMTDALNYL----KAFFHDVREAAFDETERELT-RRFE 353
Query: 368 TYFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERG 426
+ K+ + P +P + L E+ P + + + +
Sbjct: 354 EKLEELEKVSRDPS-------NENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALK 406
Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH-YAPEGLRKCIV 485
+ +S + + + ++ G ++L Q V + G ++
Sbjct: 407 KWIEENPALSFLKPGILTGRGRTNRATG---------MTLPAQKCVLEAFRASGDNNILI 457
Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
+T++A+ I I V+ Y+ + Q +GR R
Sbjct: 458 ATSVADEGIDIAECNLVI--------LYEYVG----------NVIKMIQTRGRG-RARDS 498
Query: 546 VCYRLYSEE 554
C+ L S
Sbjct: 499 KCFLLTSSA 507
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 39.8 bits (93), Expect = 0.008
Identities = 68/424 (16%), Positives = 130/424 (30%), Gaps = 92/424 (21%)
Query: 315 NFLSSYDVLVLDEIH-----ERHLHGDFLLGVIKCLLHSTAEVKIILMSATI-NIELFHT 368
+++ + LV+DEIH +R G L ++ + +++I +SAT N+
Sbjct: 134 SWIKAVSCLVVDEIHLLDSEKR---GATLEILVTKMRRMNKALRVIGLSATAPNVTEIAE 190
Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSE-KLDPGPYIRILSIIDKKYPRTERGD 427
+ + A R P+ L + E + ++ ++++ E G
Sbjct: 191 WLD--ADYYVSDWR--PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--AENGG 244
Query: 428 VLIF----MSGISEISSIVRAAQEYNEKSQGWIVLP---------------------LHS 462
VL+F + +Y E + H+
Sbjct: 245 VLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA 304
Query: 463 TLSLEEQDRVFHYAPEGLRKCIVST-------NIAETSITIDGIRFVVDSGKVKEMSYDV 515
L ++ V G K +V+T N+ + + + K
Sbjct: 305 GLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSK-------- 356
Query: 516 TAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYSLLAE---YSTPE--- 566
I + +Q GRAGR G G + + + + + PE
Sbjct: 357 ----------RIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERIT 406
Query: 567 ---IRRVSIDSLLLSLVCMG----LGDVRKFP---FL----EAPPAENIESSVRSLTQHG 612
+ LS++C G L ++ F F E + +E VR L G
Sbjct: 407 SKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWG 466
Query: 613 AIDSKERV--TSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAF 670
+ + T LG +S L +D G + + + + ++
Sbjct: 467 MVVEAAHLAPTKLGSLVSRLYIDPLTGFIF-HDVLSRMELSDIGALHLICRTPDMERLTV 525
Query: 671 RDPD 674
R D
Sbjct: 526 RKTD 529
Score = 29.8 bits (67), Expect = 8.0
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 1120 NFLSSYDVLVLDEIH-----ERHLHGDFLLGVIKCLLHSTAEVKIILMSATI-NIELF 1171
+++ + LV+DEIH +R G L ++ + +++I +SAT N+
Sbjct: 134 SWIKAVSCLVVDEIHLLDSEKR---GATLEILVTKMRRMNKALRVIGLSATAPNVTEI 188
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 37.9 bits (87), Expect = 0.027
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 25 FSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIA 84
+S + K+R + L ++ V +VV++ G GCGK+ +I L + F+
Sbjct: 138 YSDMAKLRTLRRLL------KDGEPHVSSAKVVLVDGVPGCGKTKEI---LSRVNFEEDL 188
Query: 85 CTQPRRIACISLSKRVAYETLSQYSNLV-----GYQIRFEKHRREKTKIVFITEGLLL 137
P R A + +R + + + + + K R + K +FI EGL+L
Sbjct: 189 ILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML 246
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 37.4 bits (87), Expect = 0.035
Identities = 74/468 (15%), Positives = 142/468 (30%), Gaps = 116/468 (24%)
Query: 313 ADNFLSSYDVLVLDEIHERHLHGDFLLG------VIKCLLHSTAEVKIILMSATI----- 361
+L+ + VLDE+H L V++ + ++ +SATI
Sbjct: 139 RPEWLNEVNYFVLDELH--------YLNDPERGPVVESVTIRAKRRNLLALSATISNYKQ 190
Query: 362 -----NIELFHTYFNR---IAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRIL 413
E T + R + + + P R EY+ I + + TK D L
Sbjct: 191 IAKWLGAEPVATNW-RPVPLIEGVIYPERKKK---EYNVIFKDNTTKKVHGDDAIIAYTL 246
Query: 414 SIIDKKYPRTERGDVLIF-------MSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSL 466
+ K VL+F S +I++ + +
Sbjct: 247 DSLSKNGQ------VLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGG 300
Query: 467 EEQDRV----------FHYA--------------PEGLRKCIVST-------NI-AETSI 494
++ + +H+A + K IV+T N+ A T I
Sbjct: 301 SDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVI 360
Query: 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCY--- 548
I I ++ I +Q GRAGR G G
Sbjct: 361 -IGDIYR-----------FNKKIAGYYD---EIPIMEYKQMSGRAGRPGFDQIGESIVVV 405
Query: 549 --RLYSEEQYSLLAEYSTPEIR-----RVSIDSLLLSLVCMGLG----DVRKF---PFLE 594
+ + + I + + LL ++ + F L
Sbjct: 406 RDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLA 465
Query: 595 APPAEN-IESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQID 650
+ + ++R L +H I + +T+ G+ ++DL ++ ++ G H+
Sbjct: 466 KQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKAS 525
Query: 651 TVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKE 698
L+ +L+ + + E + LE + L + Y+E
Sbjct: 526 CELAYLHLLAFTPDGPLVSVGRNEEEELIELLE-DLDCELLIEEPYEE 572
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.078
Identities = 9/73 (12%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 175 KKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMD--ANEV-EFRLKHDPKQVQVATD 231
+ +E RK + + ++E + + E + ++ E+ + + + +
Sbjct: 79 RLTQEPESIRK-WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 232 N------FLSSYD 238
N F D
Sbjct: 138 NRIADKAFYQQPD 150
Score = 34.0 bits (77), Expect = 0.18
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 31/101 (30%)
Query: 705 DRVRS-----KKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERA 759
DR+ +KW R EEQ + R Q DA+ E+
Sbjct: 78 DRLTQEPESIRKW---R--EEQ------RKRLQEL---------------DAASKVMEQE 111
Query: 760 LRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEE 800
R K L+ ++++E+ K + + + ++ + +
Sbjct: 112 WREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 33.6 bits (76), Expect = 0.24
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 774 KKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAE 829
+ +E RK + + ++E + + E R + EE +E
Sbjct: 79 RLTQEPESIRK-WREEQRKRLQELDAASKVMEQEWREKA----KKDLEEWNQRQSE 129
Score = 33.2 bits (75), Expect = 0.34
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 147 IPGPDASLSSRE--RALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEE--EEEEE 202
I D E R R + K LQ + A + + + ++EE + + E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQ--ELDAASK--VMEQEWREKAKKDLEEWNQRQSE 129
Query: 203 EGERL-ESMDANEVEFRLKHD 222
+ E+ + + F + D
Sbjct: 130 QVEKNKINNRIADKAFYQQPD 150
Score = 32.4 bits (73), Expect = 0.65
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Query: 773 RKKAEEAPKRRKMLKA-DNAYEIEEEEEEEEGER-LESRTGPGVCYRLYSEE 822
RK EE +RK L+ D A ++ E+E E+ ++ LE + SE+
Sbjct: 88 RKWREE---QRKRLQELDAASKVMEQEWREKAKKDLEEW------NQRQSEQ 130
Score = 31.3 bits (70), Expect = 1.5
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 27/70 (38%)
Query: 1084 EEEEE------EEAGERLESMDANEV---------------EFRLKHDPKQVQVAADN-- 1120
+E E EE +RL+ +DA E+ + + + +N
Sbjct: 81 TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
Query: 1121 ----FLSSYD 1126
F D
Sbjct: 141 ADKAFYQQPD 150
Score = 29.7 bits (66), Expect = 4.6
Identities = 8/51 (15%), Positives = 23/51 (45%)
Query: 151 DASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEE 201
DA+ E+ R K L+ ++++E+ K + + + ++ + +
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 29.0 bits (64), Expect = 8.3
Identities = 10/77 (12%), Positives = 29/77 (37%), Gaps = 22/77 (28%)
Query: 756 RERALRHGEIKLLQAIKRKKAEEAPKRRK-MLKADNAYEIEE--EEEEEEGERLESRTGP 812
RE Q + ++ + A K + + ++EE + + E+ E+ +
Sbjct: 91 REE----------QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN-- 138
Query: 813 GVCYRLYSEEQYSLLAE 829
R+ +++ + +
Sbjct: 139 ----RI-ADKAF--YQQ 148
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 35.5 bits (81), Expect = 0.082
Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 31/100 (31%)
Query: 380 PGRLYPIQLEYHPIV-ELDRTKSEKLDPGPYIRILSII--------DKKY---------- 420
G IQ+ Y V E +K P IRI+S + KK+
Sbjct: 116 VG--MAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFEN 173
Query: 421 -----PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGW 455
P E I S +++ + E N+K W
Sbjct: 174 IAIELPPNE-----ILFSENNDMDNNNDGVDELNKKCTFW 208
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 36.0 bits (83), Expect = 0.11
Identities = 75/479 (15%), Positives = 143/479 (29%), Gaps = 118/479 (24%)
Query: 314 DNFLSSYDVLVLDEIHERHLHGDFLLG-VIKCLLHST-AEVKIILMSATI---------- 361
+++ +LV DEI HL G G ++ +L + +II +SATI
Sbjct: 133 SSWIKDVKILVADEI---HLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWL 189
Query: 362 NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP 421
N EL + + R P++L + + G R S + Y
Sbjct: 190 NAELIVSDW-R------------PVKLRRGVFYQ----GFVTWEDGSIDRFSSWEELVYD 232
Query: 422 RTERGD-VLIF--------------------MSGISEISSIVRAAQEYNEKSQGWIVLPL 460
+ LIF + EI ++ A E +
Sbjct: 233 AIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKA 292
Query: 461 --------HSTLSLEEQDRVFHYAPEGLRKCIVST-------NIAETSITIDGIRFVVDS 505
H+ L +E+ V +G+ K +V+T N + I I D
Sbjct: 293 IRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDF 352
Query: 506 GKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRL-YSEEQYSLLAE 561
G I Q GRAGR G + S++ ++
Sbjct: 353 GME-----------------RIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNH 395
Query: 562 YSTPEIRRV--------SIDSLLLSLVCMG----LGDVRK-----FPFLEAPPAEN---- 600
Y + ++ ++ S +L+L+ + ++ K F + +
Sbjct: 396 YIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEK 455
Query: 601 IESSVRSLTQHGAIDSKE----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLA 656
I + + L ++ I+ R SLG + L +D +F ++ +
Sbjct: 456 IRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYT--AKMFKDKMEEVVKDPNPI 513
Query: 657 AVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKR 715
+ + S + + E + + D +K+ +
Sbjct: 514 GIFHLISLTPD--ITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRA 570
Score = 29.4 bits (66), Expect = 10.0
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLG-VIKCLLHST-AEVKIILMSATI-NIELF 1171
+++ +LV DEI HL G G ++ +L + +II +SATI N E
Sbjct: 133 SSWIKDVKILVADEI---HLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEEL 185
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural
genomics, structural consortium, SGC, alternative
initiation, ATP-binding, devel protein; 2.80A {Homo
sapiens}
Length = 175
Score = 34.5 bits (80), Expect = 0.12
Identities = 22/135 (16%), Positives = 55/135 (40%), Gaps = 28/135 (20%)
Query: 451 KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKE 510
G V L L++E++ + +G K +++TN+ I + + VV+
Sbjct: 55 IQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVN------ 108
Query: 511 MSYDVTAKMSTLQEFWISKASAEQ------RKGRAGRTGPGVCYRLYSEEQYSLLAE--- 561
+D+ K ++ E R GR G+ G+ + + ++ L +
Sbjct: 109 --FDLPVKQGEEPDY-------ETYLHRIGRTGRFGKK--GLAFNMIEVDELPSLMKIQD 157
Query: 562 -YSTPEIRRVSIDSL 575
+++ I++++ + +
Sbjct: 158 HFNS-SIKQLNAEDM 171
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.14
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 799 EEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPE 834
E++ ++L++ +LY+++ LA +T E
Sbjct: 18 EKQALKKLQAS------LKLYADDSAPALAIKATME 47
Score = 33.0 bits (74), Expect = 0.30
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 15/41 (36%)
Query: 1364 SIRRLLAADLKTMYRRTGAESGVPGSNPFVAEFPMVVEETL 1404
++++L A LK +Y S P +A ++ T+
Sbjct: 21 ALKKL-QASLK-LY--------ADDSAPALA-----IKATM 46
Score = 31.1 bits (69), Expect = 1.3
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 165 EIKLLQA-IKRKKAEEAPKRRKMLKADNAYEIE 196
+K LQA +K + AP L A A +E
Sbjct: 21 ALKKLQASLKLYADDSAPA----L-AIKA-TME 47
Score = 31.1 bits (69), Expect = 1.3
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 764 EIKLLQA-IKRKKAEEAPKRRKMLKADNAYEIE 795
+K LQA +K + AP L A A +E
Sbjct: 21 ALKKLQASLKLYADDSAPA----L-AIKA-TME 47
Score = 30.7 bits (68), Expect = 1.7
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 11/29 (37%)
Query: 450 EKSQGWIVLPLHSTLSLEEQDRVFHYAPE 478
EK + L ++L L YA +
Sbjct: 18 EKQA---LKKLQASLKL--------YADD 35
Score = 30.3 bits (67), Expect = 2.3
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 28/54 (51%)
Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIK 772
E+Q + KL++ K DS P AL AIK
Sbjct: 18 EKQ---ALKKLQASLKLYADDSA-----P-----------AL---------AIK 43
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 34.8 bits (81), Expect = 0.19
Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 34/154 (22%)
Query: 439 SSIV-----RAAQEYNEK--SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAE 491
SI+ A+E + + G V L L ++D + G K +V+TN+
Sbjct: 359 QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIA 418
Query: 492 TSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQ------RKGRAGRTGPG 545
I + + VV+ YD+ + + + R GR GR G
Sbjct: 419 RGIDVSQVNLVVN--------YDMPLDQAGRPDP-------QTYLHRIGRTGRFGRVGVS 463
Query: 546 VCYRLYSEEQYSLLAE----YSTPEIRRVSIDSL 575
+ + ++ ++ + + + P I RV D
Sbjct: 464 INF-VHDKKSWEEMNAIQEYFQRP-ITRVPTDDY 495
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 34.9 bits (79), Expect = 0.23
Identities = 61/572 (10%), Positives = 155/572 (27%), Gaps = 87/572 (15%)
Query: 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACIS 95
+ Y+ E+ + + +I TG GK T + + + FQ + + ++ ++
Sbjct: 4 ETKKARSYQIELAQPAINGKNALICAPTGSGK-TFVSILICEHHFQNMPAGRKAKVVFLA 62
Query: 96 LSKRVA---YETLSQYSNLVGYQIR------FEKHRREK----TKIVFITEGLLLRQDSG 142
V + GY ++ F EK + I+ +T +L+
Sbjct: 63 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILV----- 117
Query: 143 LITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE---APKRRKMLKADNAYEIEEEE 199
+ G + L +E Y ++
Sbjct: 118 ----------------NSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161
Query: 200 EEEEGERLESMDAN---EVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLL 256
+ ++ + A+ ++ + + + + + E +
Sbjct: 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRF----- 216
Query: 257 GVISPPLHCGGEIVAADYFLSSYDVL-VLDEIHERHLHGDFLLGVI--KCLLHSTVEVAA 313
+V ++ L E + + + + +
Sbjct: 217 ---MNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYE 273
Query: 314 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
+ + L ++ ++ + C H +++S I +Y
Sbjct: 274 HWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEF 333
Query: 374 AKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYI-----RILSIIDKKYPRTERGDV 428
+K Q E + ++ I+D Y +
Sbjct: 334 FTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRT 393
Query: 429 LIFMSGISEISSIVRAAQEYNEKS-------QGWIVLPLHSTLSLEEQDRVFHYAPEG-L 480
L+F + +S++ + +E + G + ++L Q V
Sbjct: 394 LLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD 453
Query: 481 RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540
+ +++T++A+ I I V + Y+ + + Q +GR
Sbjct: 454 NRLLIATSVADEGIDIVQCNLV--------VLYEYSG----------NVTKMIQVRGRG- 494
Query: 541 RTGPGVCYRLYSE---EQYSLLAEYSTPEIRR 569
R C + S+ + Y + +
Sbjct: 495 RAAGSKCILVTSKTEVVENEKCNRYKEEMMNK 526
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 32.9 bits (75), Expect = 0.40
Identities = 29/203 (14%), Positives = 65/203 (32%), Gaps = 44/203 (21%)
Query: 55 RVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGY 114
+V++I G G GKS + L + G + I
Sbjct: 2 KVILITGMPGSGKSEFA-KLLKERGAKVIVM---------------------------SD 33
Query: 115 QIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKR 174
+R K + LR+ G + A L E + ++ + ++
Sbjct: 34 VVRKRYSIEAKPGERLMDFAKRLREIYG--DGVV---ARLCVEELGTSNHDLVVFDGVRS 88
Query: 175 KKAEEAPKRRKMLKADNAYEIEEEEEEEEGERL----ESMDANEVEFRLKHDPKQVQVAT 230
E + +++L + +R+ S D+ E+ ++ D +++++
Sbjct: 89 L--AEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGI 146
Query: 231 DNFLSSYDILI-----LDEVHER 248
++ D +I +E R
Sbjct: 147 GEVIAMADYIITNDSNYEEFKRR 169
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 32.1 bits (73), Expect = 0.98
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 43 YKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIA 92
Y+ E+ L+ + +II TG GK T++ Y+ + +
Sbjct: 37 YQMEVAQPALEGKNIIICLPTGSGK-TRVAVYIAKDHLDKKKKASEPGKV 85
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 32.1 bits (73), Expect = 1.0
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 33 ETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKST---QIPQYLVQAGFQRIACTQPR 89
+S V + + ++ ++ ++G T GKST +I + L Q + + R
Sbjct: 4 HHHHSSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVE----QRQR 59
Query: 90 RIACISL 96
++ +S
Sbjct: 60 KVVILSQ 66
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 31.2 bits (71), Expect = 1.8
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 40 VAQYKQEIIDTVLKERVVI-IAGDTGCGKST 69
+ + I+ R+V+ I G + GK+T
Sbjct: 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTT 37
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase;
RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo
sapiens} SCOP: c.37.1.19
Length = 172
Score = 30.6 bits (70), Expect = 1.9
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 27/99 (27%)
Query: 451 KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKE 510
Q + + +H + EE+ + + R+ +V+TN+ + I+ +
Sbjct: 52 VEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF------- 104
Query: 511 MSYDVTAKMSTLQEFWISKASAEQ------RKGRAGRTG 543
+YD+ ++ R GR G G
Sbjct: 105 -NYDMP-------------EDSDTYLHRVARAGRFGTKG 129
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein,
translation; 1.75A {Saccharomyces cerevisiae} SCOP:
c.37.1.19
Length = 165
Score = 30.2 bits (69), Expect = 2.4
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 26/133 (19%)
Query: 451 KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKE 510
++ + V ++S L +E+D + G + ++ST++ I + + V+
Sbjct: 51 RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI------- 103
Query: 511 MSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLLAE----YSTP 565
+YD + +E +I R GR GR G GV + E + E YST
Sbjct: 104 -NYD----LPANKENYIH------RIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST- 151
Query: 566 EIRRV--SIDSLL 576
+I + I +LL
Sbjct: 152 QIEELPSDIATLL 164
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 31.2 bits (71), Expect = 2.7
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 6 YEEWKL--LLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDT 63
E KL L+RT L + + +++ + ++D + R+V++ G
Sbjct: 154 RAEKKLASLIRTLLATPPADGAGNDDWAVPKKARKGLSEEQASVLDQLAGHRLVVLTGGP 213
Query: 64 GCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVA 101
G GKST +A + + + + + A
Sbjct: 214 GTGKSTTT------KAVADLAESLGLEVGLCAPTGKAA 245
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 30.6 bits (69), Expect = 3.1
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 53 KERVVI-IAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISL 96
E +I ++G T GKS+ + +VQ Q + +++ +S
Sbjct: 20 GEPFLIGVSGGTASGKSS-VCAKIVQLLGQNEVDYRQKQVVILSQ 63
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 30.5 bits (68), Expect = 3.4
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 47 IIDTVLKERVVIIAGDTGCGKST 69
++ ++ V + G GKS
Sbjct: 23 VLPNMVAGTVGALVSPGGAGKSM 45
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 30.7 bits (69), Expect = 4.0
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 49 DTVL-----KERVVIIAGDTGCGKSTQIPQYLVQA 78
D + R +++G +G GK+ Q+L
Sbjct: 29 DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNG 63
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 30.8 bits (70), Expect = 4.1
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 48 IDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIA 92
L R+ +I+G G GK+T + + L A ++A + RI
Sbjct: 158 AAVALTRRISVISGGPGTGKTTTVAKLL--AALIQMADGERCRIR 200
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 30.0 bits (68), Expect = 4.3
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 55 RVVIIAGDTGCGKSTQIPQYLVQA 78
+ + G+ G GK+ ++ +
Sbjct: 24 FFIALTGEPGTGKTIFSLHFIAKG 47
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 30.5 bits (68), Expect = 4.4
Identities = 15/76 (19%), Positives = 28/76 (36%)
Query: 154 LSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDAN 213
L + A+ +A R +A +L+A + E E E ER++ +
Sbjct: 709 LEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREM 768
Query: 214 EVEFRLKHDPKQVQVA 229
E+ + +V A
Sbjct: 769 ELIYARAQLELEVSKA 784
Score = 30.2 bits (67), Expect = 7.2
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 165 EIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVE 216
+ + A E + A + + E+E ER + +D +E E
Sbjct: 649 RTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAE 700
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 29.9 bits (68), Expect = 4.8
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 53 KERVVI-IAGDTGCGKST 69
+ VI IAG T GK+T
Sbjct: 4 PKPFVIGIAGGTASGKTT 21
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 30.0 bits (68), Expect = 4.8
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 49 DTVL-----KERVVIIAGDTGCGKSTQIPQYLVQ 77
D +L + VV+++G G GK+ Q+L
Sbjct: 13 DEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWN 46
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct
genomics, joint center for structural genomics, JCSG;
HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Length = 377
Score = 30.2 bits (69), Expect = 5.1
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 456 IVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
+ LPL ++ E +++ L + +VS +
Sbjct: 348 VSLPLWEGMTKEIVEQIV----ICLGQKVVSAD 376
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Length = 182
Score = 29.5 bits (66), Expect = 5.3
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 772 KRKKAEEAPKRRKMLK------ADNAYEIEEEEEEEEGER-LESRTGP 812
+ KK A RR+ LK A E E +E E + L + P
Sbjct: 3 EEKKRRAATARRQHLKSAMLQLAVTEIEKEAAAKEVEKQNYLAEHSPP 50
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
3.30A {Homo sapiens} SCOP: h.1.25.2
Length = 180
Score = 29.5 bits (66), Expect = 5.7
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 772 KRKKAEEAPKRRKMLK----ADNAYEIEEEEEEEEGER---LESRTGP 812
+KK++ + R+ LK E+E E EE GE+ L +R P
Sbjct: 5 AKKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQP 52
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
2gk7_A 2xzo_A* 2xzp_A
Length = 624
Score = 29.8 bits (67), Expect = 8.1
Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 31/149 (20%)
Query: 45 QEIIDTVLKERVVIIAGDTGCGKST---QIPQYLVQAGFQRIACTQPRRIACISLSKRVA 101
+ TVL+ + +I G G GK+ I +L + G + P IA L++++
Sbjct: 186 VYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 245
Query: 102 YETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERAL 161
L +R RE D P +L ++ R +
Sbjct: 246 QTGLK--------VVRLCAKSREA-------------------IDSPVSFLALHNQIRNM 278
Query: 162 -RHGEIKLLQAIKRKKAEEAPKRRKMLKA 189
E++ LQ +K + E + K +A
Sbjct: 279 DSMPELQKLQQLKDETGELSSADEKRYRA 307
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 29.1 bits (65), Expect = 9.4
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 48 IDTVL-----KERVVIIAGDTGCGKSTQIPQYLVQA 78
D ++ + V++ G TG GK+T Q++ +
Sbjct: 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKG 54
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 28.5 bits (64), Expect = 9.7
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 43 YKQEIIDTVLKERVVIIAGDTGCGKST 69
+ +++ KE + +I G G GKS+
Sbjct: 14 HSDTVVE--FKEGINLIIGQNGSGKSS 38
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in
diseases, center for structural genomics of infectious
DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio
cholerae o1 biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 29.2 bits (66), Expect = 9.8
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 64 GCGKSTQIP---QYLVQAGFQRIACT 86
G GKST I + L Q G I T
Sbjct: 37 GAGKSTAIQVVVETLQQNGIDHITRT 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.392
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,855,956
Number of extensions: 1408864
Number of successful extensions: 3756
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3599
Number of HSP's successfully gapped: 171
Length of query: 1417
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1311
Effective length of database: 3,742,167
Effective search space: 4905980937
Effective search space used: 4905980937
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.9 bits)