RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3476
(1417 letters)
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 137 bits (346), Expect = 4e-36
Identities = 39/274 (14%), Positives = 82/274 (29%), Gaps = 27/274 (9%)
Query: 381 GRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISS 440
G I ++ + + I ++ F+ I +
Sbjct: 1 GTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWI---------LADKRPTAWFLPSIRAANV 51
Query: 441 IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR 500
+ + ++ G V+ L+ E + P I++T+IAE + +
Sbjct: 52 MAASLRK-----AGKSVVVLNRKTFEREYPTIKQKKP----DFILATDIAEMGANLC-VE 101
Query: 501 FVVDSG-KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG----VCYRLYSEEQ 555
V+D K + D K++ IS +SA QR+GR GR Y + E
Sbjct: 102 RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSEN 161
Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
+ + + +++ + + P E + +
Sbjct: 162 NAHHVCWLEASMLLDNMEVRGGM---VAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVR 218
Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQI 649
+ + L ++ + K G H+I
Sbjct: 219 NCDLPVWLSWQVAKAGLKTNDRKWCFEGPEEHEI 252
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 105 bits (263), Expect = 3e-25
Identities = 44/250 (17%), Positives = 79/250 (31%), Gaps = 41/250 (16%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
+ + + +Y+++++DE H G I + E I M+AT
Sbjct: 91 RLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEM-GEAAGIFMTATP-------- 141
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
P PI E I E + D K G +
Sbjct: 142 ---PGSRDPFPQSNAPIMDEEREIPERSWN----------SGHEWVTDFK------GKTV 182
Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
F+ I + I ++ G V+ L E + +V+T+I
Sbjct: 183 WFVPSIKAGNDIAACLRK-----NGKKVIQLSRKTFDSEYIKTRTND----WDFVVTTDI 233
Query: 490 AETSITIDGIRFVVDSGKVKE--MSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
+E V+D + + + D ++ ++ +SA QR+GR GR
Sbjct: 234 SEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEN 292
Query: 548 YR-LYSEEQY 556
+ +Y E
Sbjct: 293 DQYIYMGEPL 302
Score = 59.9 bits (144), Expect = 6e-10
Identities = 11/96 (11%), Positives = 30/96 (31%), Gaps = 10/96 (10%)
Query: 47 IIDTVLKE-RVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAY 102
I D + ++ R+ I+ G GK+ + +V+ + R P R+ + + +
Sbjct: 1 IEDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRG 60
Query: 103 ETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLR 138
+ + + + +
Sbjct: 61 LPIRYQT------PAIRAEHTGREIVDLMCHATFTM 90
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 53.3 bits (127), Expect = 9e-09
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 55 RVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGY 114
+V + TG GKST++P G++ + P A + ++ + G
Sbjct: 9 QVAHLHAPTGSGKSTKVPAAYAAQGYK-VLVLNPSVAATLGFGAYMSKAHGVDPNIRTGV 67
Query: 115 QIRFEKHR 122
+
Sbjct: 68 RTITTGSP 75
Score = 48.7 bits (115), Expect = 3e-07
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 360
+YD+++ DE H +G + + ++L +AT
Sbjct: 91 SGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATAT 135
Score = 48.7 bits (115), Expect = 3e-07
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 1121 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 1165
+YD+++ DE H +G + + ++L +AT
Sbjct: 91 SGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATAT 135
Score = 33.7 bits (76), Expect = 0.056
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 275 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLL 305
+YD+++ DE H +G +
Sbjct: 91 SGGAYDIIICDECHSTDATSILGIGTVLDQA 121
Score = 32.9 bits (74), Expect = 0.088
Identities = 9/76 (11%), Positives = 17/76 (22%)
Query: 184 RKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILD 243
+ + + R + +YDI+I D
Sbjct: 42 SVAATLGFGAYMSKAHGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICD 101
Query: 244 EVHERHLYGDFLLGVI 259
E H +G +
Sbjct: 102 ECHSTDATSILGIGTV 117
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 48.7 bits (115), Expect = 2e-06
Identities = 45/280 (16%), Positives = 93/280 (33%), Gaps = 29/280 (10%)
Query: 285 DEIHE-RHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIK 343
+ E R L + L +K L + + ++ + +VL +I +
Sbjct: 13 EIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGL 72
Query: 344 CLLHSTAEV--KIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKS 401
L H+ A I + T + Y ++ + K ++ ++ +
Sbjct: 73 LLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLL 132
Query: 402 EKLDPGPYI-----RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQ--- 453
+ ++ II ++ R + +++F + IV + K++
Sbjct: 133 VQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFV 192
Query: 454 GWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSY 513
G LS EQ + G +V+T++ E + + + VV Y
Sbjct: 193 GQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF--------Y 244
Query: 514 DVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553
+ S + QR+GR GR PG L ++
Sbjct: 245 E----------PVPSAIRSIQRRGRTGRHMPGRVIILMAK 274
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 39.3 bits (90), Expect = 7e-04
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 360
+ + +++V+++DE H G + E ILM+AT
Sbjct: 89 RMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARAN-ESATILMTAT 138
Score = 38.9 bits (89), Expect = 9e-04
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 1165
+ +++V+++DE H G + E ILM+AT
Sbjct: 93 PTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARAN-ESATILMTAT 138
Score = 34.3 bits (77), Expect = 0.038
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 53 KERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACI 94
K ++ G GK+ + ++ +R T +
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRV 47
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 37.8 bits (87), Expect = 0.004
Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 26/178 (14%)
Query: 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK 451
P+V + T+++ LD ++ I ++ R ER L+ + + + E
Sbjct: 6 PLVRVKPTENQILD------LMEGIRERAARGER--TLVTVLTVRMAEELTSFLVE---- 53
Query: 452 SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEM 511
G LH L ++ + G C+V N+ + I + V + +
Sbjct: 54 -HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVA----ILDA 108
Query: 512 SYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRR 569
+ + S Q GRA R G + ++ RR
Sbjct: 109 DKEGFLRSER---------SLIQTIGRAARNARGEVWLYADRVSEAMQRAIEETNRRR 157
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 34.5 bits (78), Expect = 0.049
Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 24/160 (15%)
Query: 413 LSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRV 472
LS I KY E + I E+S + H+ L ++ V
Sbjct: 60 LSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKG-------AAFHHAGLLNGQRRVV 112
Query: 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASA 532
G K +V+T + + R +V S +D +K + E+
Sbjct: 113 EDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYR----FDGYSKRIKVSEYK------ 162
Query: 533 EQRKGRAGRTG---PGVCYRLYSEEQYSLLAE---YSTPE 566
Q GRAGR G G + + + + + PE
Sbjct: 163 -QMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPE 201
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 34.3 bits (78), Expect = 0.074
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
L + +LDE L+ F+ V K L + +I+L SAT+ E+ +AK
Sbjct: 143 LKNVKYFILDEAD-EMLNMGFIKDVEKILNACNKDKRILLFSATMPREI-----LNLAKK 196
Query: 1182 LLS 1184
+
Sbjct: 197 YMG 199
Score = 33.1 bits (75), Expect = 0.16
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIEL 365
L + +LDE L+ F+ V K L + +I+L SAT+ E+
Sbjct: 143 LKNVKYFILDEAD-EMLNMGFIKDVEKILNACNKDKRILLFSATMPREI 190
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 33.9 bits (76), Expect = 0.10
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 45 QEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYET 104
++ ++ V + G GKS L +IA + V Y
Sbjct: 20 DYVLPNMVAGTVGALVSPGGAGKSM-----LALQLAAQIAGGPDLLEVGELPTGPVIYLP 74
Query: 105 LSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDI 147
+ +++ + + +GLL++ G + +I
Sbjct: 75 AEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNI 117
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 31.5 bits (70), Expect = 0.56
Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 56 VVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISL 96
++ ++G T GKS+ + +VQ Q + +++ +S
Sbjct: 4 LIGVSGGTASGKSS-VCAKIVQLLGQNEVDYRQKQVVILSQ 43
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 31.0 bits (69), Expect = 0.63
Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 25/147 (17%)
Query: 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD 470
RI K + ++ +I R + S+ +++ + S EE++
Sbjct: 72 RIAFNSKNKIRKLRE---ILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREERE 128
Query: 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKA 530
+ G + IVS+ + + I + V + S
Sbjct: 129 EILEGFRTGRFRAIVSSQVLDEGIDVPDANVGV------------------IMSGSGSAR 170
Query: 531 SAEQRKGRAGRTGPG----VCYRLYSE 553
QR GR R G V Y L S
Sbjct: 171 EYIQRLGRILRPSKGKKEAVLYELISR 197
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 30.8 bits (68), Expect = 1.1
Identities = 14/121 (11%), Positives = 28/121 (23%), Gaps = 5/121 (4%)
Query: 24 KFSTLMKIRETQNSLPVAQYKQEIIDTVL-----KERVVIIAGDTGCGKSTQIPQYLVQA 78
F T + E + + + D +L + G+ GK+ V A
Sbjct: 2 GFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 61
Query: 79 GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLR 138
+I I + L ++ + + L
Sbjct: 62 QLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELL 121
Query: 139 Q 139
Sbjct: 122 D 122
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 29.3 bits (64), Expect = 2.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 53 KERVVIIAGDTGCGKSTQIPQYL 75
K R + I G GKS+ Q++
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFV 25
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.9 bits (63), Expect = 2.4
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 55 RVVIIAGDTGCGKSTQIPQYLVQA-GFQRIACTQPRR 90
++++ G G GKST +++ + GF I R+
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQ 39
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 28.8 bits (63), Expect = 2.8
Identities = 14/150 (9%), Positives = 33/150 (22%), Gaps = 13/150 (8%)
Query: 53 KERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLV 112
+ ++ G +G GKS +A ++ L + +
Sbjct: 5 DHHIYVLMGVSGSGKSAVA---------SEVA----HQLHAAFLDGDFLHPRRNIEKMAS 51
Query: 113 GYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAI 172
G + + + + + LI + L+
Sbjct: 52 GEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGD 111
Query: 173 KRKKAEEAPKRRKMLKADNAYEIEEEEEEE 202
R+ + E +E
Sbjct: 112 FDVIESRLKARKGHFFKTQMLVTQFETLQE 141
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 29.0 bits (63), Expect = 2.9
Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 10/187 (5%)
Query: 43 YKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLS 97
Y++ I + +I+ TG GK+ G + + + S
Sbjct: 13 YQEVIYAKCKETNCLIVL-PTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAES 71
Query: 98 KRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSR 157
R + + + + E+ + + I ++ L I D SL
Sbjct: 72 FRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVF 131
Query: 158 ERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEF 217
+ A R I R+ +A + + E+ E + ++ +E+
Sbjct: 132 DEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIM----EVINNLGIEHIEY 187
Query: 218 RLKHDPK 224
R ++ P
Sbjct: 188 RSENSPD 194
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 29.2 bits (64), Expect = 2.9
Identities = 33/213 (15%), Positives = 53/213 (24%), Gaps = 17/213 (7%)
Query: 43 YKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAY 102
+ D L E V ++G G GKST V A + R +
Sbjct: 15 FFARTFD--LDELVTTLSGGNGAGKST-TMAAFVTALIPDLTLLHFRNTTEAGATSGSRD 71
Query: 103 ETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGP---------DAS 153
+ L + ++V + + P
Sbjct: 72 KGLHGKLKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQ 131
Query: 154 LSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDAN 213
L + R + L +K K + K + Y + RL S
Sbjct: 132 LVTETLNERQARVLPLNELKDKLEAMEGVQFKQFNSITDYHSLMFDLGIIARRLRSASDR 191
Query: 214 EVEFRLKHD--PKQVQVATDNFLSSYDILILDE 244
+RL + A L Y +L E
Sbjct: 192 SKFYRLIEASLYGGISSAITRSLRDY---LLPE 221
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.8 bits (63), Expect = 3.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 55 RVVIIAGDTGCGKSTQI 71
+VV++ G G G +T
Sbjct: 2 KVVVVTGVPGVGSTTSS 18
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 29.0 bits (63), Expect = 3.6
Identities = 7/54 (12%), Positives = 12/54 (22%)
Query: 55 RVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQY 108
+ + G+ GK+ V + I E L
Sbjct: 24 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 77
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 28.8 bits (63), Expect = 4.0
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 53 KERVVIIAGDTGCGKSTQIPQYLVQA-GFQRIAC 85
K +++ + G G GK TQ + +VQ G+ ++
Sbjct: 7 KSKIIFVVGGPGSGKGTQC-EKIVQKYGYTHLST 39
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 29.0 bits (63), Expect = 4.2
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 43 YKQEIIDTVLKERVVIIAGDTGCGKST 69
+ +++ KE + +I G G GKS+
Sbjct: 14 HSDTVVE--FKEGINLIIGQNGSGKSS 38
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.4 bits (62), Expect = 4.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 52 LKERVVIIAGDTGCGKSTQIPQYL 75
L+E V + GDTG GKS+ + +++
Sbjct: 2 LRELKVCLLGDTGVGKSSIMWRFV 25
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.4 bits (62), Expect = 4.5
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 52 LKERVVIIAGDTGCGKSTQIPQYL 75
++E +++ G G GKS Q++
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFV 24
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 28.4 bits (62), Expect = 4.5
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 53 KERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIAC 93
K VV + G G GK TQ + G+ ++ R
Sbjct: 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQ 45
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 28.3 bits (62), Expect = 4.6
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 57 VIIAGDTGCGKSTQIPQYLVQA-GFQRIACTQPRRIACISLSKR 99
+++ G G GK TQ +V+ G I+ R A ++
Sbjct: 3 IVLMGLPGAGKGTQA-DRIVEKYGTPHISTGDMFRAAIQEGTEL 45
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 28.7 bits (63), Expect = 5.0
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 1121 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAK 1180
+ VLDE L F + + +++L+SAT+ ++ + K
Sbjct: 152 SPKYIKMFVLDEAD-EMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDV-----LEVTK 205
Query: 1181 DLL 1183
+
Sbjct: 206 KFM 208
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 28.4 bits (62), Expect = 5.2
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 53 KERVVIIAGDTGCGKSTQIP---QYLVQAGFQRIACTQPRRIACISLSKR 99
+ ++++ G GKSTQ + L AG + P R I
Sbjct: 2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLS 51
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 28.3 bits (62), Expect = 5.3
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 14/74 (18%)
Query: 1120 NFLSSYDVLVLDEIHE----------RHLHGDFLLGVIKCLLHSTAEVKIILMSATINIE 1169
L +D + +D++ F + A +++ +AT
Sbjct: 158 RELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKG 217
Query: 1170 LFHTYFNRIAKDLL 1183
+ + LL
Sbjct: 218 KKA----ELFRQLL 227
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 28.3 bits (62), Expect = 5.5
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 57 VIIAGDTGCGKSTQIPQYLVQA-GFQRIACTQPRRIAC 93
+++ G G GK TQ + +V A G I+ R A
Sbjct: 3 LVLMGLPGAGKGTQA-EKIVAAYGIPHISTGDMFRAAM 39
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 28.5 bits (62), Expect = 5.5
Identities = 8/67 (11%), Positives = 14/67 (20%)
Query: 55 RVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGY 114
+ + G+ GKS V + I L + G
Sbjct: 35 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGL 94
Query: 115 QIRFEKH 121
+
Sbjct: 95 DPDDALN 101
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 28.3 bits (62), Expect = 5.9
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 1122 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181
L +LDE + D V + + E ++++ SAT++ E+ + +
Sbjct: 143 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEI-----RPVCRK 197
Query: 1182 LL 1183
+
Sbjct: 198 FM 199
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 28.0 bits (61), Expect = 6.0
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 53 KERVVIIAGDTGCGKSTQIPQYLVQA-GFQRIACTQPRR 90
+ V+ + G G GK TQ + LV+ F ++ R
Sbjct: 7 QVSVIFVLGGPGAGKGTQC-EKLVKDYSFVHLSAGDLLR 44
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 28.0 bits (61), Expect = 6.0
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 49 DTVLKERVVIIAGDTGCGKSTQIPQYL 75
D + K ++ G+ G GKS + Q++
Sbjct: 3 DFLFK---FLVIGNAGTGKSCLLHQFI 26
>d1knza_ e.34.1.1 (A:) NSP3 homodimer {Simian 11 rotavirus [TaxId:
10923]}
Length = 157
Score = 27.6 bits (61), Expect = 6.4
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 707 VRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGP----DASLSSRER-ALR 761
V + + GIE ++++++F V+ DSG+ + G D +L+++ A+R
Sbjct: 18 VAATSALENMGIEYDYQDIYSRVKNKFDFVMDDSGVKNNPIGKAITIDQALNNKFGSAIR 77
Query: 762 HGEIKLLQAIKRKKAEEAPKRRKMLKADN 790
+ + K E+ K R ML +
Sbjct: 78 NRNWLADTSRPAKLDEDVNKLRMMLSSKG 106
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 28.3 bits (62), Expect = 6.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 56 VVIIAGDTGCGKSTQIPQYLVQAGFQRIAC 85
V ++ G G GK+T + L + +IA
Sbjct: 5 VTLLTGFLGAGKTTLLRHILNEQHGYKIAV 34
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 27.6 bits (60), Expect = 6.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 52 LKERVVIIAGDTGCGKSTQIPQYL 75
++E V++ G G GKS Q++
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFV 24
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 27.7 bits (60), Expect = 7.3
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 57 VIIAGDTGCGKSTQIPQYL 75
++ GD GK+ + Y
Sbjct: 8 CVVVGDGAVGKTCLLISYT 26
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 27.7 bits (60), Expect = 7.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 55 RVVIIAGDTGCGKSTQI 71
++ I+ G G GKST +
Sbjct: 2 KIGIVTGIPGVGKSTVL 18
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 28.0 bits (62), Expect = 7.7
Identities = 19/139 (13%), Positives = 35/139 (25%), Gaps = 34/139 (24%)
Query: 422 RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEE----------QDR 471
+ G LIF + + + G + + L +
Sbjct: 33 VIKGGRHLIFCHSKKKCDELAA-----KLVALGINAVAYYRGLDVSVIPTSGDVVVVATD 87
Query: 472 VFHYAPEGLRKCIVSTNIAETSITIDGIR--FVVDSGKVKEMSYDVTAKMSTLQEFWISK 529
G ++ N T + F +++ +
Sbjct: 88 ALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIET-------TTLP----------QDA 130
Query: 530 ASAEQRKGRAGRTGPGVCY 548
S QR+GR GR PG+
Sbjct: 131 VSRTQRRGRTGRGKPGIYR 149
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 27.7 bits (60), Expect = 7.9
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 52 LKERVVIIAGDTGCGKSTQIPQYL 75
+++++VI+ GD CGK+ +
Sbjct: 1 IRKKLVIV-GDGACGKTCLLIVNS 23
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 27.7 bits (60), Expect = 7.9
Identities = 23/187 (12%), Positives = 44/187 (23%), Gaps = 11/187 (5%)
Query: 54 ERVVIIAGDTGCGKSTQIPQYL---VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSN 110
+ +IIAG GK++ + V+ ++ +
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYK 62
Query: 111 LVGYQIRFEKHRREKTKIVFITEGL--------LLRQDSGLITDIPGPDASLSSRERALR 162
L Y K + +V T L + +
Sbjct: 63 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE 122
Query: 163 HGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHD 222
+ IK E K + K + EE+ E + + F+ +
Sbjct: 123 LFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFANL 182
Query: 223 PKQVQVA 229
V
Sbjct: 183 EASVVAF 189
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.5 bits (60), Expect = 8.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 55 RVVIIAGDTGCGKSTQIPQYLVQAGFQRI 83
VV+ G G GKST I ++LV AG+ +
Sbjct: 15 EVVVAVGFPGAGKSTFIQEHLVSAGYVHV 43
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 27.4 bits (59), Expect = 8.3
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 53 KERVVIIAGDTGCGKSTQIPQYL 75
+E ++I G G GK+T + +
Sbjct: 4 REMRILILGLDGAGKTTILYRLQ 26
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.7 bits (60), Expect = 8.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 55 RVVIIAGDTGCGKSTQIPQYLVQA 78
R +++G +G GK+ Q+L
Sbjct: 27 RSTLVSGTSGTGKTLFSIQFLYNG 50
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 27.7 bits (60), Expect = 8.8
Identities = 9/90 (10%), Positives = 21/90 (23%), Gaps = 4/90 (4%)
Query: 55 RVVIIAGDTGCGKSTQIP---QYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNL 111
+ + I G+ GKST + Q + + + N+
Sbjct: 3 KKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNV 62
Query: 112 VGYQIR-FEKHRREKTKIVFITEGLLLRQD 140
+ E+ ++
Sbjct: 63 LQMMYEKPERWSFTFQTYACLSRIRAQLAS 92
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 27.3 bits (59), Expect = 9.1
Identities = 20/162 (12%), Positives = 49/162 (30%), Gaps = 7/162 (4%)
Query: 53 KERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVAYETLSQYSN 110
K ++I G G GK++ + + GFQ + + + +T
Sbjct: 4 KGINILITGTPGTGKTSMA-EMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEK 62
Query: 111 LVGYQIRFEKHRREKTKIVFITE---GLLLRQDSGLITDIPGPDASLSSRERALRHGEIK 167
+ F + + L + ++ + L R ++ E K
Sbjct: 63 DEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAK 122
Query: 168 LLQAIKRKKAEEAPKRRKML-KADNAYEIEEEEEEEEGERLE 208
+ ++ + + + + D E + E+ +E
Sbjct: 123 RAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVE 164
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.392
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,187,384
Number of extensions: 253247
Number of successful extensions: 842
Number of sequences better than 10.0: 1
Number of HSP's gapped: 828
Number of HSP's successfully gapped: 83
Length of query: 1417
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1320
Effective length of database: 1,075,786
Effective search space: 1420037520
Effective search space used: 1420037520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.2 bits)