BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3479
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 248 bits (633), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 127/216 (58%), Positives = 161/216 (74%), Gaps = 10/216 (4%)
Query: 208 EGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQE 267
EG+ Q TEVDLFIST++I VLN D +E MMDHALRTISYIADIG++VVLMARRR
Sbjct: 59 EGDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSA 118
Query: 268 ADEPPKISRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEMDYQE 327
+ KMICHVFES++AQ IAQSIGQAF VAY EFL+ANGI ++ +Y +
Sbjct: 119 G------KKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQK-EYSD 171
Query: 328 VLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGA 387
++N+QE++ D+L F+ E KE+ + K KGEILGVV+VES S+LPTV++AN+ G
Sbjct: 172 IINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVES---SILPTVILANMMNGGP 228
Query: 388 AARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKIL 423
AAR G+L+IGDQI+++NG SLVGLPL+TCQ IK L
Sbjct: 229 AARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGL 264
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 113/201 (56%), Gaps = 57/201 (28%)
Query: 10 KEIMMDHALRTISYIADIGDLVVLMARRR----------------FVSQEAD-------- 45
+E MMDHALRTISYIADIG++VVLMARRR F S++A
Sbjct: 85 QETMMDHALRTISYIADIGNIVVLMARRRMPRSAGKKQYKMICHVFESEDAQLIAQSIGQ 144
Query: 46 -----------------------EPPKISRTPKM----ICHVFESD---EVVVPKAKGEI 75
E I T +M + H S+ E+ + K KGEI
Sbjct: 145 AFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEI 204
Query: 76 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 135
LGVV+VES S+LPTV++AN+ G AAR G+L+IGDQI+++NG SLVGLPL+TCQ I
Sbjct: 205 LGVVVVES---SILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGII 261
Query: 136 KNSKNQTVVKLTVVPCAPVVE 156
K KNQT VKL +V C PV E
Sbjct: 262 KGLKNQTQVKLNIVSCPPVTE 282
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 56/69 (81%), Gaps = 3/69 (4%)
Query: 444 VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
+ K KGEILGVV+VES S+LPTV++AN+ G AAR G+L+IGDQI+++NG SLVGLP
Sbjct: 197 LEKHKGEILGVVVVES---SILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP 253
Query: 504 LSTCQTYIK 512
L+TCQ IK
Sbjct: 254 LATCQGIIK 262
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 92/115 (80%)
Query: 62 ESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
E +V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++NG
Sbjct: 1 EFKDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 60
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTKYQLGFSVQNGV 176
SLVGLPLSTCQ+ IK KNQ+ VKL +V C PV V I+RPD +YQLGFSVQNG+
Sbjct: 61 SLVGLPLSTCQSIIKGLKNQSRVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGI 115
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 94/155 (60%), Gaps = 9/155 (5%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
K+V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++NG SL
Sbjct: 3 KDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSL 62
Query: 409 VGLPLSTCQTYIKILMKTMPTSMFRLLTGQETPVVVPKAKGEILGVVIVESGWGSMLPTV 468
VGLPLSTCQ+ IK L + + T V++ + + G +
Sbjct: 63 VGLPLSTCQSIIKGLKNQSRVKLNIVRCPPVTTVLIRRPD--------LRYQLGFSVQNG 114
Query: 469 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
+I +L G A R G + +G +II +NG S+V P
Sbjct: 115 IICSLMRGGIAER-GGVRVGHRIIEINGQSVVATP 148
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 60/71 (84%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++NG SLVG
Sbjct: 5 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 64
Query: 502 LPLSTCQTYIK 512
LPLSTCQ+ IK
Sbjct: 65 LPLSTCQSIIK 75
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 378 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI-----KILMKTMPTSMF 432
+I +L G A R G + +G +II +NG S+V P + +I MKTMP +M+
Sbjct: 115 IICSLMRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMY 173
Query: 433 RLLTGQETPVVV 444
RLLT QE PV +
Sbjct: 174 RLLTAQEQPVYI 185
>pdb|4DBB|A Chain A, The Ptb Domain Of Mint1 Is Autoinhibited By A Helix In The
C-Terminal Linker Region
Length = 162
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 97/129 (75%), Gaps = 11/129 (8%)
Query: 207 PEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQ 266
PEGE+QP TEVDLFIST++I VLN D +E MMDH LRTISYIADIG++VVLMARRR
Sbjct: 45 PEGESQPMTEVDLFISTQRIKVLNADTQEPMMDHPLRTISYIADIGNIVVLMARRRMPRS 104
Query: 267 EADEPPKISRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEMDYQ 326
+ KMICHVFES++AQ IAQSIGQAF VAY EFL+ANGI ++ +Y
Sbjct: 105 QY----------KMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQK-EYS 153
Query: 327 EVLNSQEIF 335
++LN+Q+++
Sbjct: 154 DLLNTQDMY 162
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 11/74 (14%)
Query: 10 KEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEV-VV 68
+E MMDH LRTISYIADIG++VVLMARRR + KMICHVFES++ ++
Sbjct: 72 QEPMMDHPLRTISYIADIGNIVVLMARRRMPRSQY----------KMICHVFESEDAQLI 121
Query: 69 PKAKGEILGVVIVE 82
++ G+ V E
Sbjct: 122 AQSIGQAFSVAYQE 135
>pdb|3SV1|A Chain A, Crystal Structure Of App Peptide Bound Rat Mint2 Parm
pdb|3SV1|B Chain B, Crystal Structure Of App Peptide Bound Rat Mint2 Parm
pdb|3SV1|C Chain C, Crystal Structure Of App Peptide Bound Rat Mint2 Parm
Length = 190
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 100/135 (74%), Gaps = 12/135 (8%)
Query: 208 EGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRF---V 264
EG+ Q TEVDLFIST++I VLN D +E MMDHALRTISYIADIG++VVLMARRR
Sbjct: 59 EGDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSA 118
Query: 265 SQEADE----PPKISRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGI--EDHS 318
SQ+ E + + KMICHVFES++AQ IAQSIGQAF VAY EFL+ANGI ED S
Sbjct: 119 SQDCIETTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLS 178
Query: 319 FVKEMDYQEVLNSQE 333
+ +Y +++N+QE
Sbjct: 179 ---QKEYSDIINTQE 190
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 8/81 (9%)
Query: 10 KEIMMDHALRTISYIADIGDLVVLMARRRF---VSQEADE----PPKISRTPKMICHVFE 62
+E MMDHALRTISYIADIG++VVLMARRR SQ+ E + + KMICHVFE
Sbjct: 85 QETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPGAQEGKKQYKMICHVFE 144
Query: 63 SDEV-VVPKAKGEILGVVIVE 82
S++ ++ ++ G+ V E
Sbjct: 145 SEDAQLIAQSIGQAFSVAYQE 165
>pdb|1AQC|A Chain A, X11 Ptb Domain-10mer Peptide Complex
pdb|1AQC|B Chain B, X11 Ptb Domain-10mer Peptide Complex
pdb|1X11|A Chain A, X11 Ptb Domain
pdb|1X11|B Chain B, X11 Ptb Domain
Length = 172
Score = 142 bits (358), Expect = 5e-34, Method: Composition-based stats.
Identities = 74/117 (63%), Positives = 85/117 (72%), Gaps = 7/117 (5%)
Query: 205 KAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFV 264
KAPEGE+QP TEVDLFI T++I VLN D +E DH LRTISYIADIG++VVL ARRR
Sbjct: 54 KAPEGESQPXTEVDLFILTQRIKVLNADTQETXXDHPLRTISYIADIGNIVVLXARRRIP 113
Query: 265 SQEADEPPKIS-------RTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGI 314
+ E + S R K ICHVFES++AQ IAQSIGQAF VAY EFL+ANGI
Sbjct: 114 RSNSQENVEASHPSQDGKRQYKXICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGI 170
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 10 KEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKIS-------RTPKMICHVFE 62
+E DH LRTISYIADIG++VVL ARRR + E + S R K ICHVFE
Sbjct: 83 QETXXDHPLRTISYIADIGNIVVLXARRRIPRSNSQENVEASHPSQDGKRQYKXICHVFE 142
Query: 63 SDEV-VVPKAKGEILGVVIVE 82
S++ ++ ++ G+ V E
Sbjct: 143 SEDAQLIAQSIGQAFSVAYQE 163
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 71/88 (80%)
Query: 62 ESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
E +V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++NG
Sbjct: 1 EFKDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 60
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
SLVGLPLSTCQ+ IK KNQ+ VKL +V
Sbjct: 61 SLVGLPLSTCQSIIKGLKNQSRVKLNIV 88
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 63/75 (84%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
K+V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++NG SL
Sbjct: 3 KDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSL 62
Query: 409 VGLPLSTCQTYIKIL 423
VGLPLSTCQ+ IK L
Sbjct: 63 VGLPLSTCQSIIKGL 77
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 60/71 (84%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++NG SLVG
Sbjct: 5 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 64
Query: 502 LPLSTCQTYIK 512
LPLSTCQ+ IK
Sbjct: 65 LPLSTCQSIIK 75
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 71/88 (80%)
Query: 62 ESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
S +V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++NG
Sbjct: 5 SSGDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 64
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
SLVGLPLSTCQ+ IK KNQ+ VKL +V
Sbjct: 65 SLVGLPLSTCQSIIKGLKNQSRVKLNIV 92
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 62/77 (80%)
Query: 436 TGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 495
+G V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++N
Sbjct: 3 SGSSGDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSIN 62
Query: 496 GVSLVGLPLSTCQTYIK 512
G SLVGLPLSTCQ+ IK
Sbjct: 63 GTSLVGLPLSTCQSIIK 79
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 62/74 (83%)
Query: 350 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 409
+V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++NG SLV
Sbjct: 8 DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLV 67
Query: 410 GLPLSTCQTYIKIL 423
GLPLSTCQ+ IK L
Sbjct: 68 GLPLSTCQSIIKGL 81
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 108 bits (270), Expect = 8e-24, Method: Composition-based stats.
Identities = 52/90 (57%), Positives = 67/90 (74%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
EV + K +GE LGV +VESGWGS+LPT VIANL G A R G L+IGD++ A+NG SLV
Sbjct: 12 EVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLV 71
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVPCAPV 154
GLPL+ CQ ++ +K+QT V L++V C PV
Sbjct: 72 GLPLAACQAAVRETKSQTSVTLSIVHCPPV 101
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 55/73 (75%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+EV + K +GE LGV +VESGWGS+LPT VIANL G A R G L+IGD++ A+NG SL
Sbjct: 11 REVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSL 70
Query: 409 VGLPLSTCQTYIK 421
VGLPL+ CQ ++
Sbjct: 71 VGLPLAACQAAVR 83
Score = 88.2 bits (217), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 53/71 (74%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
V + K +GE LGV +VESGWGS+LPT VIANL G A R G L+IGD++ A+NG SLVG
Sbjct: 13 VHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVG 72
Query: 502 LPLSTCQTYIK 512
LPL+ CQ ++
Sbjct: 73 LPLAACQAAVR 83
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 55/325 (16%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
P++ I + P GAAA+ G+L + D I+ VN V + + S +K + ++V+L V+
Sbjct: 89 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG--SIVRLYVM 146
Query: 150 ----PCAPVVEVK-IKRPDTKYQLGFSVQNGVAPEGETQPSTEVDLFISTEKIMVLNTDL 204
P V+E+K IK P LGFS+ GV G + ++++ ++
Sbjct: 147 RRKPPAEKVMEIKLIKGPKG---LGFSIAGGV---GNQHIPGDNSIYVTK----IIEGGA 196
Query: 205 KAPEGETQPSTEVDLFISTEKIMVLNT-DLKEIMMDHALRTISYIADIGDLVVLMARRRF 263
+G Q +KI+ +N+ L+++M + A+ + D+ L V +
Sbjct: 197 AHKDGRLQIG---------DKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAY 247
Query: 264 VSQEADEPPKISRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEM 323
+S ++ PP I+ + +Q + ++++ +L + +
Sbjct: 248 LS-DSYAPPDITTS---------------YSQHLDN--EISHSSYLGTDYPTAMTPTSPR 289
Query: 324 DYQEVLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLA 383
Y V ++++ G+E +E ++ V+ + G +V E G G + I+ +
Sbjct: 290 RYSPV--AKDLLGEED---IPREPRRIVIHRGSTGLGFNIVGGEDGEG-----IFISFIL 339
Query: 384 PAGAAARCGQLNIGDQIIAVNGVSL 408
G A G+L GDQI++VNGV L
Sbjct: 340 AGGPADLSGELRKGDQILSVNGVDL 364
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRL 434
P++ I + P GAAA+ G+L + D I+ VN V + + S +K + + R
Sbjct: 89 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 148
Query: 435 LTGQETPVVVPKAKG-EILGVVIVESGWGSMLP---TVVIANLAPAGAAARCGQLNIGDQ 490
E + + KG + LG I +P ++ + + GAA + G+L IGD+
Sbjct: 149 KPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDK 208
Query: 491 IIAVNGVSL 499
I+AVN V L
Sbjct: 209 ILAVNSVGL 217
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 97/254 (38%), Gaps = 78/254 (30%)
Query: 319 FVKEMDYQEVLNSQEI-----FGDELQMF---AKKELQKEVVVPKAKG-EILGVVIVESG 369
FV E+D +EV +S + G ++++ K +K + + KG + LG I
Sbjct: 116 FVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGV 175
Query: 370 WGSMLP---TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL---------VGLPLSTCQ 417
+P ++ + + GAA + G+L IGD+I+AVN V L L +
Sbjct: 176 GNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDV 235
Query: 418 TYIKI----------------------------------LMKTMPTSMFRLLTGQETPVV 443
Y+K+ L PT+M + +PV
Sbjct: 236 VYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVA 295
Query: 444 --------VPKAKGEI--------LGVVIV--ESGWGSMLPTVVIANLAPAGAAARCGQL 485
+P+ I LG IV E G G + I+ + G A G+L
Sbjct: 296 KDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEG-----IFISFILAGGPADLSGEL 350
Query: 486 NIGDQIIAVNGVSL 499
GDQI++VNGV L
Sbjct: 351 RKGDQILSVNGVDL 364
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 76 LGVVIV--ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQT 133
LG IV E G G + I+ + G A G+L GDQI++VNGV L
Sbjct: 320 LGFNIVGGEDGEG-----IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 374
Query: 134 YIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTKYQL 168
+KN+ QTV + + K D + QL
Sbjct: 375 ALKNA-GQTVTIIAQYKPEEYSRFEAKIHDLREQL 408
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 25/175 (14%)
Query: 355 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 414
K +G LG+ + SG ++NL G AAR QL++GD I AVNG++L
Sbjct: 15 KKEGTTLGLTV--SGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHD 72
Query: 415 TCQTYIKILMKTM---------PTS------MFRLLTGQETPVVVPKAKGEILGVVIVES 459
+ +K + + + P S MFR T V +G G VI
Sbjct: 73 EIISLLKNVGERVVLEVEYELPPVSIQGSSVMFR------TVEVTLHKEGNTFGFVIRGG 126
Query: 460 GWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+ VVI + P G A R G + GD++++V+G+ L+G + + +K
Sbjct: 127 AHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 181
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 70 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 129
K +G LG+ + SG ++NL G AAR QL++GD I AVNG++L
Sbjct: 15 KKEGTTLGLTV--SGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHD 72
Query: 130 TCQTYIKNSKNQTVVKL 146
+ +KN + V+++
Sbjct: 73 EIISLLKNVGERVVLEV 89
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 21 ISYIADIGDLVVLMARRRFVSQEADEPP-KISRTPKMICHVFESDEVVVPKAKGEILGVV 79
IS + ++G+ VVL E + PP I + M F + EV + K +G G V
Sbjct: 75 ISLLKNVGERVVLEV-------EYELPPVSIQGSSVM----FRTVEVTLHK-EGNTFGFV 122
Query: 80 IVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 136
I + VVI + P G A R G + GD++++V+G+ L+G + + +K
Sbjct: 123 IRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 181
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRL 434
P++ I + P GAAA+ G+L + D I+ VN V + + S +K + + R
Sbjct: 42 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 101
Query: 435 LTGQETPVVVPKAKG-EILGVVIVESGWGSMLP---TVVIANLAPAGAAARCGQLNIGDQ 490
E + + KG + LG I +P ++ + + GAA + G+L IGD+
Sbjct: 102 KPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDK 161
Query: 491 IIAVNGVSL 499
I+AVN V L
Sbjct: 162 ILAVNSVGL 170
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
P++ I + P GAAA+ G+L + D I+ VN V + + S +K + ++V+L V+
Sbjct: 42 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA--GSIVRLYVM 99
Query: 150 ----PCAPVVEVK-IKRPDTKYQLGFSVQNGVA 177
P V+E+K IK P LGFS+ GV
Sbjct: 100 RRKPPAEKVMEIKLIKGPKG---LGFSIAGGVG 129
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLT 147
++ + + GAA + G+L IGD+I+AVN V L + +KN+ + +K+
Sbjct: 138 SIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVA 194
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRL 434
P++ I + P GAAA+ G+L + D I+ VN V + + S +K + + R
Sbjct: 32 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 91
Query: 435 LTGQETPVVVPKAKG-EILGVVIVESGWGSMLP---TVVIANLAPAGAAARCGQLNIGDQ 490
E + + KG + LG I +P ++ + + GAA + G+L IGD+
Sbjct: 92 KPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDK 151
Query: 491 IIAVNGVSL 499
I+AVN V L
Sbjct: 152 ILAVNSVGL 160
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
P++ I + P GAAA+ G+L + D I+ VN V + + S +K + ++V+L V+
Sbjct: 32 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA--GSIVRLYVM 89
Query: 150 ----PCAPVVEVK-IKRPDTKYQLGFSVQNGVA 177
P V+E+K IK P LGFS+ GV
Sbjct: 90 RRKPPAEKVMEIKLIKGPKG---LGFSIAGGVG 119
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLT 147
++ + + GAA + G+L IGD+I+AVN V L + +KN+ + +K+
Sbjct: 128 SIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVA 184
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRL 434
P++ I + P GAAA+ G+L + D I+ VN V + + S +K + + R
Sbjct: 35 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 94
Query: 435 LTGQETPVVVPKAKG-EILGVVIVESGWGSMLP---TVVIANLAPAGAAARCGQLNIGDQ 490
E + + KG + LG I +P ++ + + GAA + G+L IGD+
Sbjct: 95 KPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDK 154
Query: 491 IIAVNGVSL 499
I+AVN V L
Sbjct: 155 ILAVNSVGL 163
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
P++ I + P GAAA+ G+L + D I+ VN V + + S +K + ++V+L V+
Sbjct: 35 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA--GSIVRLYVM 92
Query: 150 ----PCAPVVEVK-IKRPDTKYQLGFSVQNGVA 177
P V+E+K IK P LGFS+ GV
Sbjct: 93 RRKPPAEKVMEIKLIKGPKG---LGFSIAGGVG 122
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLT 147
++ + + GAA + G+L IGD+I+AVN V L + +KN+ + +K+
Sbjct: 131 SIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVA 187
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 378 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLL-- 435
+I+ + A RCG L IGD+++A+NG+ ST + ++L + TS L
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTED---STFEEANQLLRDSSITSKVTLEIE 95
Query: 436 ---------TGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLN 486
+ V +PK LG+ I +VI+++ A R G L
Sbjct: 96 FDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLE 155
Query: 487 IGDQIIAVNGVSL 499
+GD+++A++ + L
Sbjct: 156 LGDKLLAIDNIRL 168
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 93 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL------ 146
+I+ + A RCG L IGD+++A+NG+ +++S + V L
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDV 98
Query: 147 --TVVPCAPVVEVKIKRPDTKYQLGFSVQN 174
+V+P + VK+ + + +LG ++ +
Sbjct: 99 AESVIPSSGTFHVKLPKKHS-VELGITISS 127
>pdb|1N3H|A Chain A, Coupling Of Folding And Binding In The Ptb Domain Of The
Signaling Protein Shc
pdb|1OY2|A Chain A, Coupling Of Folding And Binding In The Ptb Domain Of The
Signaling Protein Shc
Length = 207
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 12/96 (12%)
Query: 217 VDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISR 276
+ L +ST + ++ D K+I+ +H +++IS+ A GD +V+ A +P
Sbjct: 122 ITLTVSTSSLNLMAADCKQIIANHHMQSISF-ASGGDPDTA----EYVAYVAKDP----- 171
Query: 277 TPKMICHVFESDE--AQFIAQSIGQAFQVAYMEFLK 310
+ CH+ E E AQ + +IGQAF++ + ++L+
Sbjct: 172 VNQRACHILECPEGLAQDVISTIGQAFELRFKQYLR 207
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 361 LGVVIVESGWGS---MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQ 417
LG IV G+GS LP + + + GAA+ G+L GDQIIAVNG SL G+ T +
Sbjct: 38 LGFSIV-GGYGSPHGDLP-IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGV---THE 92
Query: 418 TYIKILMKTMPTSMFRLLTGQETPV 442
+ IL +T T +L+ ET V
Sbjct: 93 EAVAILKRTKGTVTLMVLSSDETSV 117
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 76 LGVVIVESGWGS---MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQ 132
LG IV G+GS LP + + + GAA+ G+L GDQIIAVNG SL G+
Sbjct: 38 LGFSIV-GGYGSPHGDLP-IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAV 95
Query: 133 TYIKNSKN 140
+K +K
Sbjct: 96 AILKRTKG 103
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 452 LGVVIVESGWGS---MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
LG IV G+GS LP + + + GAA+ G+L GDQIIAVNG SL G+
Sbjct: 38 LGFSIV-GGYGSPHGDLP-IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGV 89
>pdb|2L1C|A Chain A, Shc-Ptb:biphosphorylated Integrin Beta3 Cytoplasmic Tail
Complex (1:1)
Length = 211
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 12/96 (12%)
Query: 217 VDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISR 276
+ L +ST + ++ D K+I+ +H +++IS+ A GD +V+ A +P
Sbjct: 126 ITLTVSTSSLNLMAADCKQIIANHHMQSISF-ASGGDPDTA----EYVAYVAKDP----- 175
Query: 277 TPKMICHVFESDE--AQFIAQSIGQAFQVAYMEFLK 310
+ CH+ E E AQ + +IGQAF++ + ++L+
Sbjct: 176 VNQRACHILECPEGLAQDVISTIGQAFELRFKQYLR 211
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 378 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLST-----CQTYIKILMKTMPTSMF 432
+I +L G A R G + +G +II +NG S+V P + + Y ++ +KTMP + +
Sbjct: 30 IICSLLRGGIAER-GGIRVGHRIIEINGQSVVATPHARIIELLTEAYGEVHIKTMPAATY 88
Query: 433 RLLTGQ 438
RLLTGQ
Sbjct: 89 RLLTGQ 94
>pdb|1SHC|A Chain A, Shc Ptb Domain Complexed With A Trka Receptor
Phosphopeptide, Nmr, Minimized Average Structure
Length = 195
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 12/96 (12%)
Query: 217 VDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISR 276
+ L +ST + ++ D K+I+ +H +++IS+ A GD +V+ A +P
Sbjct: 110 ITLTVSTSSLNLMAADCKQIIANHHMQSISF-ASGGDPDTA----EYVAYVAKDP----- 159
Query: 277 TPKMICHVFESDE--AQFIAQSIGQAFQVAYMEFLK 310
+ CH+ E E AQ + +IGQAF++ + ++L+
Sbjct: 160 VNQRACHILECPEGLAQDVISTIGQAFELRFKQYLR 195
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 61 FESDEVVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQ 114
++ +VV+ + + E G VI+ ESG +P I + A RC +L +GD+
Sbjct: 9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHK-IGRIIDGSPADRCAKLKVGDR 67
Query: 115 IIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150
I+AVNG S++ +P + IK++ V L ++P
Sbjct: 68 ILAVNGQSIINMPHADIVKLIKDAG--LSVTLRIIP 101
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 438 QETPVVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 491
Q + VV+ + + E G VI+ ESG +P I + A RC +L +GD+I
Sbjct: 10 QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHK-IGRIIDGSPADRCAKLKVGDRI 68
Query: 492 IAVNGVSLVGLPLSTCQTYIK 512
+AVNG S++ +P + IK
Sbjct: 69 LAVNGQSIINMPHADIVKLIK 89
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 350 EVVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 403
+VV+ + + E G VI+ ESG +P I + A RC +L +GD+I+AV
Sbjct: 13 DVVIHRKENEGFGFVIISSLNRPESGSTITVPHK-IGRIIDGSPADRCAKLKVGDRILAV 71
Query: 404 NGVSLVGLPLSTCQTYIK 421
NG S++ +P + IK
Sbjct: 72 NGQSIINMPHADIVKLIK 89
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 76 LGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 131
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLVG+ +
Sbjct: 93 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 152
Query: 132 QTYIKNSK 139
T ++N+K
Sbjct: 153 ATVLRNTK 160
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 361 LGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 416
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLVG+
Sbjct: 93 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGV----T 148
Query: 417 QTYIKILMKTMPTSMFRLLTGQE 439
Q + +++ ++ R + G+E
Sbjct: 149 QNFAATVLRNTKGNV-RFVIGRE 170
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 452 LGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 507
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLVG+ +
Sbjct: 93 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 152
Query: 508 QTYIK 512
T ++
Sbjct: 153 ATVLR 157
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 153 PVVEVKIKRPDTKYQLGFSVQNGV 176
PV V I+RPD +YQLGFSVQNG+
Sbjct: 2 PVTTVLIRRPDLRYQLGFSVQNGI 25
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ + N+ P GAA + G+L GD++I VNGV LVG + ++++K + V L V
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLV 116
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 410
+ + N+ P GAA + G+L GD++I VNGV LVG
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVG 93
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ + N+ P GAA + G+L GD++I VNGV LVG
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVG 93
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 76 LGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 131
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLVG+ +
Sbjct: 17 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 76
Query: 132 QTYIKNSKNQ 141
T ++N+K
Sbjct: 77 ATVLRNTKGN 86
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 361 LGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 416
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLVG+
Sbjct: 17 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGV----T 72
Query: 417 QTYIKILMKTMPTSMFRLLTGQE 439
Q + +++ ++ R + G+E
Sbjct: 73 QNFAATVLRNTKGNV-RFVIGRE 94
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 452 LGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 507
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLVG+ +
Sbjct: 17 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 76
Query: 508 QTYIK 512
T ++
Sbjct: 77 ATVLR 81
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 70 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 129
K G LG+ I SG ++I++L G A R G ++IGD+I+A+N SL G PLS
Sbjct: 12 KRYGGPLGITI--SGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLS 69
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 355 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 414
K G LG+ I SG ++I++L G A R G ++IGD+I+A+N SL G PLS
Sbjct: 12 KRYGGPLGITI--SGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLS 69
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 446 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 505
K G LG+ I SG ++I++L G A R G ++IGD+I+A+N SL G PLS
Sbjct: 12 KRYGGPLGITI--SGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLS 69
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 58 CHVFESDEVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 116
C + E+++ +KG LG+ IV G + L +VI + GAAAR G+L GDQI+
Sbjct: 11 CPIVPGQEMIIEISKGRSGLGLSIV-GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQIL 69
Query: 117 AVNGVSL 123
VNGV L
Sbjct: 70 EVNGVDL 76
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 434 LLTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 493
++ GQE + + K + LG+ IV G + L +VI + GAAAR G+L GDQI+
Sbjct: 13 IVPGQEMIIEISKGRSG-LGLSIV-GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILE 70
Query: 494 VNGVSL 499
VNGV L
Sbjct: 71 VNGVDL 76
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 349 KEVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 407
+E+++ +KG LG+ IV G + L +VI + GAAAR G+L GDQI+ VNGV
Sbjct: 17 QEMIIEISKGRSGLGLSIV-GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVD 75
Query: 408 L 408
L
Sbjct: 76 L 76
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSM----LPT---VVIANLAPAGAAARCGQLNIGDQII 401
+E+ + KA GE LG+ I G PT + I+ ++P GAA R G+L +G +++
Sbjct: 11 RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLL 70
Query: 402 AVNGVSLVGL 411
VN SL+GL
Sbjct: 71 EVNQQSLLGL 80
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSM----LPT---VVIANLAPAGAAARCGQLNIGDQIIA 117
E+ + KA GE LG+ I G PT + I+ ++P GAA R G+L +G +++
Sbjct: 12 ELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLE 71
Query: 118 VNGVSLVGL 126
VN SL+GL
Sbjct: 72 VNQQSLLGL 80
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 444 VPKAKGEILGVVIVESGWGSM----LPT---VVIANLAPAGAAARCGQLNIGDQIIAVNG 496
+ KA GE LG+ I G PT + I+ ++P GAA R G+L +G +++ VN
Sbjct: 15 IQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQ 74
Query: 497 VSLVGL 502
SL+GL
Sbjct: 75 QSLLGL 80
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 76 LGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 131
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLVG+ +
Sbjct: 22 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 81
Query: 132 QTYIKNSKNQ 141
T ++N+K
Sbjct: 82 ATVLRNTKGN 91
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 361 LGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 416
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLVG+
Sbjct: 22 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGV----T 77
Query: 417 QTYIKILMKTMPTSMFRLLTGQETP 441
Q + +++ ++ R + G+E P
Sbjct: 78 QNFAATVLRNTKGNV-RFVIGREKP 101
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 452 LGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 507
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLVG+ +
Sbjct: 22 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 81
Query: 508 QTYIK 512
T ++
Sbjct: 82 ATVLR 86
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
++V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 29 RKVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 86
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 123
+V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 30 KVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 86
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 31 VLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 86
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP-------LSTCQTYIKILMKTMPT 429
+ I+ + P G A R G L GDQ+++VNGVS+ G L Q +K+++++ P+
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGPS 91
Query: 430 S 430
S
Sbjct: 92 S 92
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ I+ + P G A R G L GDQ+++VNGVS+ G +K + Q VKL V
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA--QGSVKLVV 86
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ I+ + P G A R G L GDQ+++VNGVS+ G
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 65
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
++V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 11 RKVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 68
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 123
+V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 12 KVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 68
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 13 VLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 68
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ + N+ P GAA + G+L GD++I VNGV L G + ++++K + V L V
Sbjct: 35 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLV 91
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 410
+ + N+ P GAA + G+L GD++I VNGV L G
Sbjct: 35 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 68
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ + N+ P GAA + G+L GD++I VNGV L G
Sbjct: 35 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 68
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ + N+ P GAA + G+L GD++I VNGV L G + ++++K + V L V
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLV 97
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 410
+ + N+ P GAA + G+L GD++I VNGV L G
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 74
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ + N+ P GAA + G+L GD++I VNGV L G
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 74
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 154 VVEVKIKRPDTKYQLGFSVQNGV 176
V V I+RPD +YQLGFSVQNG+
Sbjct: 12 VTTVLIRRPDLRYQLGFSVQNGI 34
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 74 EILGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 129
E LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G SLVG+ S
Sbjct: 91 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS 150
Query: 130 TCQTYIKNSKNQ 141
+ ++N+K +
Sbjct: 151 FAASVLRNTKGR 162
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 337 DELQMFAKKELQKEV-------VVPKAKGEILGVVIVESGWGSMLP----TVVIANLAPA 385
D + A+ EL+K V V + E LG+ I+ G G+ + + + +
Sbjct: 62 DPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEG 121
Query: 386 GAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQE 439
GAA R G++ + D ++ V+G SLVG+ Q++ +++ R + G+E
Sbjct: 122 GAAHRDGRIQVNDLLVEVDGTSLVGV----TQSFAASVLRNT-KGRVRFMIGRE 170
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 441 PVVVPKAKGEILGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNG 496
PV + K E LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G
Sbjct: 83 PVELEK-DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDG 141
Query: 497 VSLVGLPLSTCQTYIK 512
SLVG+ S + ++
Sbjct: 142 TSLVGVTQSFAASVLR 157
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 74 EILGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 129
E LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G SLVG+ S
Sbjct: 15 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS 74
Query: 130 TCQTYIKNSKNQ 141
+ ++N+K +
Sbjct: 75 FAASVLRNTKGR 86
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 359 EILGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 414
E LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G SLVG+
Sbjct: 15 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV--- 71
Query: 415 TCQTYIKILMKTMPTSMFRLLTGQETP 441
Q++ +++ + R + G+E P
Sbjct: 72 -TQSFAASVLRNTKGRV-RFMIGRERP 96
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 441 PVVVPKAKGEILGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNG 496
PV + K E LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G
Sbjct: 7 PVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDG 65
Query: 497 VSLVGLPLSTCQTYIK 512
SLVG+ S + ++
Sbjct: 66 TSLVGVTQSFAASVLR 81
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 436 TGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 495
+G +V K LG+ I E G + P I + G+A CGQL +G I+ VN
Sbjct: 3 SGSSGTLVRVKKSAATLGIAI-EGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVN 61
Query: 496 GVSLVG 501
G++L G
Sbjct: 62 GLTLRG 67
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 63 SDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 122
S +V K LG+ I E G + P I + G+A CGQL +G I+ VNG++
Sbjct: 6 SGTLVRVKKSAATLGIAI-EGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLT 64
Query: 123 LVG 125
L G
Sbjct: 65 LRG 67
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 355 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 410
K LG+ I E G + P I + G+A CGQL +G I+ VNG++L G
Sbjct: 13 KKSAATLGIAI-EGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
++V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 4 RKVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 61
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 123
+V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 5 KVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 61
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 6 VLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 61
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLT 436
+ + ++ + A G++ IGDQIIAV+G +L G T Q +++L T T + L+
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGF---TNQQAVEVLRHTGQTVLLTLMR 91
Query: 437 GQETPV 442
ET V
Sbjct: 92 RGETSV 97
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 516
+ + ++ + A G++ IGDQIIAV+G +L G T Q ++V H
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGF---TNQQAVEVLRH 80
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 127
+ + ++ + A G++ IGDQIIAV+G +L G
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFT 70
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 126
P + I L P AA G+L++GD+I+ VNG SL+GL
Sbjct: 36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGL 72
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
P + I L P AA G+L++GD+I+ VNG SL+GL
Sbjct: 36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGL 72
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
P + I L P AA G+L++GD+I+ VNG SL+GL
Sbjct: 36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGL 72
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 437 GQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 496
G ET + + K + LG+ IV G ++L ++I + GAA + G+L GDQI+ VNG
Sbjct: 3 GCETTIEISKGRTG-LGLSIV-GGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNG 60
Query: 497 VSL 499
+ L
Sbjct: 61 IDL 63
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 65 EVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 123
E + +KG LG+ IV G ++L ++I + GAA + G+L GDQI+ VNG+ L
Sbjct: 5 ETTIEISKGRTGLGLSIV-GGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 350 EVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
E + +KG LG+ IV G ++L ++I + GAA + G+L GDQI+ VNG+ L
Sbjct: 5 ETTIEISKGRTGLGLSIV-GGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 74 EILGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 129
E LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G SLVG+ S
Sbjct: 91 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS 150
Query: 130 TCQTYIKNSKNQ 141
+ ++N+K +
Sbjct: 151 FAASVLRNTKGR 162
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 337 DELQMFAKKELQKEV-------VVPKAKGEILGVVIVESGWGSMLPT----VVIANLAPA 385
D + A+ EL+K V V + E LG+ I+ G G+ + + + +
Sbjct: 62 DPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEG 121
Query: 386 GAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
GAA R G++ + D ++ V+G SLVG+ S + ++
Sbjct: 122 GAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR 157
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 441 PVVVPKAKGEILGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAVNG 496
PV + K E LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G
Sbjct: 83 PVELEK-DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDG 141
Query: 497 VSLVGLPLSTCQTYIK 512
SLVG+ S + ++
Sbjct: 142 TSLVGVTQSFAASVLR 157
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPT 429
+ + ++ GAA++ G+L + DQ+IAVNG SL+G Q ++ L ++M T
Sbjct: 41 IFVKSIINGGAASKDGRLRVNDQLIAVNGESLLG---KANQEAMETLRRSMST 90
Score = 35.8 bits (81), Expect = 0.058, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 125
+ + ++ GAA++ G+L + DQ+IAVNG SL+G
Sbjct: 41 IFVKSIINGGAASKDGRLRVNDQLIAVNGESLLG 74
Score = 35.8 bits (81), Expect = 0.058, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ + ++ GAA++ G+L + DQ+IAVNG SL+G
Sbjct: 41 IFVKSIINGGAASKDGRLRVNDQLIAVNGESLLG 74
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 81 VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKN 140
+E G S + VV++ + GAA R G + GD+I+A+NG + L+ + ++ + N
Sbjct: 34 LEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWN 93
Query: 141 Q--TVVKLTVVPCAP 153
Q + L V C P
Sbjct: 94 QGGDWIDLVVAVCPP 108
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 341 MFAKKELQ-KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQ 399
MF+ +++ K+V + + K E + +E G S + VV++ + GAA R G + GD+
Sbjct: 8 MFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDE 67
Query: 400 IIAVNGVSLVGLPLSTCQTYIK 421
I+A+NG + L+ + ++
Sbjct: 68 IMAINGKIVTDYTLAEAEAALQ 89
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 457 VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+E G S + VV++ + GAA R G + GD+I+A+NG + L+ + ++
Sbjct: 34 LEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQ 89
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPT 429
+ + ++ GAA++ G+L + DQ+IAVNG SL+G Q ++ L ++M T
Sbjct: 38 IFVKSIINGGAASKDGRLRVNDQLIAVNGESLLG---KANQEAMETLRRSMST 87
Score = 35.4 bits (80), Expect = 0.072, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 125
+ + ++ GAA++ G+L + DQ+IAVNG SL+G
Sbjct: 38 IFVKSIINGGAASKDGRLRVNDQLIAVNGESLLG 71
Score = 35.4 bits (80), Expect = 0.072, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ + ++ GAA++ G+L + DQ+IAVNG SL+G
Sbjct: 38 IFVKSIINGGAASKDGRLRVNDQLIAVNGESLLG 71
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL 146
++ + + GAA + G+L IGD+++AVN VSL + T +KN+ + +K+
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKV 89
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 12/66 (18%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL---------VGLPLSTCQTYIKILMKT 426
++ + + GAA + G+L IGD+++AVN VSL L ++ Y+K+
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKV---A 90
Query: 427 MPTSMF 432
PTSM+
Sbjct: 91 KPTSMY 96
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
++ + + GAA + G+L IGD+++AVN VSL
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSL 66
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTV 143
P + I+++ P +A G L IGDQI+ VNGV L +K+S++ T+
Sbjct: 27 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTI 79
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHL 517
P + I+++ P +A G L IGDQI+ VNGV L +K + L
Sbjct: 27 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSL 77
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
P + I+++ P +A G L IGDQI+ VNGV L
Sbjct: 27 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNL 62
>pdb|3R0H|A Chain A, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|B Chain B, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|C Chain C, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|D Chain D, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|E Chain E, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|F Chain F, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|G Chain G, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|H Chain H, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
Length = 206
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 10/163 (6%)
Query: 355 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL-VG--L 411
K + + +GV++ + VI ++ P G A +L I D I +NG + VG
Sbjct: 25 KVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMT 84
Query: 412 PLSTCQTYIKILMKTMPTSMFRLLTG--QETPVVVPKAKGEILGVVIVESGWGSMLPTVV 469
L Q + K + ++FR ++ V + K G+ LG+ + + G
Sbjct: 85 TLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIG-----CT 139
Query: 470 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
IA+L +L GD I NG +L GLP C K
Sbjct: 140 IADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK 182
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 108 QLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLT 147
+L GD I NG +L GLP C K + + +++T
Sbjct: 154 KLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVT 193
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 24/131 (18%)
Query: 12 IMMDHALRTISYIADIGDLVVLMARR-RFVSQEADEPPKISRTPKMICHVFESDEVVVPK 70
I + H R +S I D+ D+V RR R + +D+P + ++ + V V
Sbjct: 9 ISIPHDFRQVSAIIDV-DIVPETHRRVRLLKHGSDKP--------LGFYIRDGTSVRVTA 59
Query: 71 AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS- 129
+ E P + I+ L P G A G L + D++I VNG+ + G L
Sbjct: 60 SGLE-------------KQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQ 106
Query: 130 TCQTYIKNSKN 140
+ NS N
Sbjct: 107 VTDMMVANSSN 117
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 514
P + I+ L P G A G L + D++I VNG+ + G L + N
Sbjct: 66 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVAN 114
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 413
P + I+ L P G A G L + D++I VNG+ + G L
Sbjct: 66 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 104
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 89 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS-TCQTYIKNSKN 140
+P + I+ L P G A G L + D+++ VNG+ + G L I NS+N
Sbjct: 64 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRN 116
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 374 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 413
+P + I+ L P G A G L + D+++ VNG+ + G L
Sbjct: 64 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSL 103
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 465 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 504
+P + I+ L P G A G L + D+++ VNG+ + G L
Sbjct: 64 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSL 103
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 384 PAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQ 438
P GAA G+++ GD+++AVNGVSL G +T + ++ L T L GQ
Sbjct: 51 PQGAAESDGRIHKGDRVLAVNGVSLEG---ATHKQAVETLRNTGQVVHLLLEKGQ 102
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 99 PAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNS 138
P GAA G+++ GD+++AVNGVSL G ++N+
Sbjct: 51 PQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 90
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 475 PAGAAARCGQLNIGDQIIAVNGVSLVG 501
P GAA G+++ GD+++AVNGVSL G
Sbjct: 51 PQGAAESDGRIHKGDRVLAVNGVSLEG 77
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLT 436
+++A + GAA R G +++GD++ VNG+ + + I+IL ++ F+++
Sbjct: 30 IIVARIXRGGAADRSGLIHVGDELREVNGIPVED---KRPEEIIQILAQSQGAITFKIIP 86
Query: 437 G--QETP 441
G +ETP
Sbjct: 87 GSKEETP 93
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
+++A + GAA R G +++GD++ VNG+
Sbjct: 30 IIVARIXRGGAADRSGLIHVGDELREVNGI 59
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGV 497
+++A + GAA R G +++GD++ VNG+
Sbjct: 30 IIVARIXRGGAADRSGLIHVGDELREVNGI 59
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL 146
++ + ++ GAA + G+L IGD+++AVN V L + T +KN+ + +K+
Sbjct: 34 SIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKV 89
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 12/66 (18%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL---------VGLPLSTCQTYIKILMKT 426
++ + ++ GAA + G+L IGD+++AVN V L L ++ Y+K+
Sbjct: 34 SIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKV---A 90
Query: 427 MPTSMF 432
PTSM+
Sbjct: 91 KPTSMY 96
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
++ + ++ GAA + G+L IGD+++AVN V L
Sbjct: 34 SIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGL 66
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 35.4 bits (80), Expect = 0.074, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTV 143
P + I+++ P +A G L IGDQI+ VNGV L +K+S++ T+
Sbjct: 41 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTI 93
Score = 32.0 bits (71), Expect = 0.91, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
P + I+++ P +A G L IGDQI+ VNGV L
Sbjct: 41 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNL 76
Score = 32.0 bits (71), Expect = 0.91, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
P + I+++ P +A G L IGDQI+ VNGV L
Sbjct: 41 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNL 76
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 384 PAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQ 438
P GAA G+++ GD+++AVNGVSL G +T + ++ L T L GQ
Sbjct: 42 PQGAAESDGRIHKGDRVLAVNGVSLEG---ATHKQAVETLRNTGQVVHLLLEKGQ 93
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 99 PAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNS 138
P GAA G+++ GD+++AVNGVSL G ++N+
Sbjct: 42 PQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 81
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 475 PAGAAARCGQLNIGDQIIAVNGVSLVG 501
P GAA G+++ GD+++AVNGVSL G
Sbjct: 42 PQGAAESDGRIHKGDRVLAVNGVSLEG 68
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLT 436
+ + + P GAA G+++ GD+++AVNGVSL G +T + ++ L T L
Sbjct: 34 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG---ATHKQAVETLRNTGQVVHLLLEK 90
Query: 437 GQ 438
GQ
Sbjct: 91 GQ 92
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNS 138
+ + + P GAA G+++ GD+++AVNGVSL G ++N+
Sbjct: 34 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 80
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ + + P GAA G+++ GD+++AVNGVSL G
Sbjct: 34 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 67
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 384 PAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQ 438
P GAA G+++ GD+++AVNGVSL G +T + ++ L T L GQ
Sbjct: 42 PQGAAESDGRIHKGDRVLAVNGVSLEG---ATHKQAVETLRNTGQVVHLLLEKGQ 93
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 99 PAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNS 138
P GAA G+++ GD+++AVNGVSL G ++N+
Sbjct: 42 PQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 81
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 475 PAGAAARCGQLNIGDQIIAVNGVSLVG 501
P GAA G+++ GD+++AVNGVSL G
Sbjct: 42 PQGAAESDGRIHKGDRVLAVNGVSLEG 68
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS-TCQTYIKNSKN 140
P + I+ L P G A G L + D++I VNG+ + G L + NS N
Sbjct: 38 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSN 89
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 413
P + I+ L P G A G L + D++I VNG+ + G L
Sbjct: 38 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 76
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 504
P + I+ L P G A G L + D++I VNG+ + G L
Sbjct: 38 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 76
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 66 VVVPKAKGEILGVVIVESGWGSMLPTV--VIANLAPAGAAARCGQLNIGDQIIAVNGVSL 123
V + K + LG+ I G GS L V IA + P G AA+ +L +GD+I+ + G S
Sbjct: 28 VEMKKGPTDSLGISIA-GGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTST 86
Query: 124 VGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKI 159
G+ + +KN+ +++ VV V E +
Sbjct: 87 EGMTHTQAVNLLKNASGS--IEMQVVAGGDVSETSV 120
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTV--VIANLAPAGAAARCGQLNIGDQIIAVNGV 406
+ V + K + LG+ I G GS L V IA + P G AA+ +L +GD+I+ + G
Sbjct: 26 RTVEMKKGPTDSLGISIA-GGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGT 84
Query: 407 SLVGL 411
S G+
Sbjct: 85 STEGM 89
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 442 VVVPKAKGEILGVVIVESGWGSMLPTV--VIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
V + K + LG+ I G GS L V IA + P G AA+ +L +GD+I+ + G S
Sbjct: 28 VEMKKGPTDSLGISIA-GGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTST 86
Query: 500 VGL 502
G+
Sbjct: 87 EGM 89
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLT 436
+ + + P GAA G+++ GD+++AVNGVSL G +T + ++ L T L
Sbjct: 42 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG---ATHKQAVETLRNTGQVVHLLLEK 98
Query: 437 GQ 438
GQ
Sbjct: 99 GQ 100
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNS 138
+ + + P GAA G+++ GD+++AVNGVSL G ++N+
Sbjct: 42 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 88
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ + + P GAA G+++ GD+++AVNGVSL G
Sbjct: 42 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 75
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 35.4 bits (80), Expect = 0.084, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 60 VFESDEVVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGD 113
+FE+ V + + G+ LG+ IV +G S + + ++ P AA G + + D
Sbjct: 13 LFETYNVELVRKDGQSLGIRIVGYVGTSHTGEAS---GIYVKSVIPGSAAYHNGHIQVND 69
Query: 114 QIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
+I+AV+GV++ G ++N+ VV LT+V
Sbjct: 70 KIVAVDGVNIQGFANHDVVEVLRNAGQ--VVHLTLV 103
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLT 436
+ + ++ P AA G + + D+I+AV+GV++ G ++ + + ++ R T
Sbjct: 48 IYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKT 107
Query: 437 GQET-PVVVPKAKGEILG 453
T P+ P +G + G
Sbjct: 108 SSSTSPLEPPSDRGTVSG 125
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
+ + ++ P AA G + + D+I+AV+GV++ G
Sbjct: 48 IYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGF 82
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 51 SRTPKMIC--HVFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQ 108
S P+ +C HV E + + G LG IV G VV+ + P G A R G+
Sbjct: 5 SSGPETVCWGHVEEVELI----NDGSGLGFGIV----GGKTSGVVVRTIVPGGLADRDGR 56
Query: 109 LNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQ 141
L GD I+ + G ++ G+ ++N N
Sbjct: 57 LQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNS 89
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 358 GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP----- 412
G LG IV G VV+ + P G A R G+L GD I+ + G ++ G+
Sbjct: 25 GSGLGFGIV----GGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVA 80
Query: 413 --LSTCQTYIKILMKTMPTSMFRLLTG 437
L C +++L+ P + +G
Sbjct: 81 QVLRNCGNSVRMLVARDPAGDISVTSG 107
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 449 GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
G LG IV G VV+ + P G A R G+L GD I+ + G ++ G+
Sbjct: 25 GSGLGFGIV----GGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGM 74
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 35.0 bits (79), Expect = 0.092, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL 146
++ + + GAA + G+L IGD+++AVN V+L + T +KN+ + +K+
Sbjct: 33 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKV 88
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
++ + + GAA + G+L IGD+++AVN V+L
Sbjct: 33 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVAL 65
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
++ + + GAA + G+L IGD+++AVN V+L
Sbjct: 33 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVAL 65
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS-TCQTYIKNSKN 140
P + I+ L P G A G L + D++I VNG+ + G L + NS N
Sbjct: 40 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSN 91
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 413
P + I+ L P G A G L + D++I VNG+ + G L
Sbjct: 40 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 78
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 504
P + I+ L P G A G L + D++I VNG+ + G L
Sbjct: 40 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 78
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSK 139
P V I + P G + G+L GDQ++++N S++G+ ++ I +K
Sbjct: 41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK 90
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 420
P V I + P G + G+L GDQ++++N S++G+ ++ I
Sbjct: 41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 86
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 511
P V I + P G + G+L GDQ++++N S++G+ ++ I
Sbjct: 41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 86
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 123
+ ++ +A GAA R G L +GD+++++NGV +
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDV 71
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+ ++ +A GAA R G L +GD+++++NGV +
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDV 71
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
+ ++ +A GAA R G L +GD+++++NGV +
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDV 71
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL 146
++ + + GAA + G+L IGD+++AVN V L + T +KN+ + +K+
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKV 89
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL---------VGLPLSTCQTYIKILMKT 426
++ + + GAA + G+L IGD+++AVN V L L ++ Y+K+
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKV---A 90
Query: 427 MPTSMF 432
PTSM+
Sbjct: 91 KPTSMY 96
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGL 66
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL 146
++ + + GAA + G+L IGD+++AVN V+L + T +KN+ + +K+
Sbjct: 39 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKV 94
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
++ + + GAA + G+L IGD+++AVN V+L
Sbjct: 39 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVAL 71
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
++ + + GAA + G+L IGD+++AVN V+L
Sbjct: 39 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVAL 71
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150
+ +A + G R G L++GD+I+ +NG ++ + Q +K +K ++ L V+P
Sbjct: 37 SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKG--MISLKVIP 94
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
+ +A + G R G L++GD+I+ +NG ++ + Q +K
Sbjct: 37 SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK 82
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+ +A + G R G L++GD+I+ +NG ++ + Q +K
Sbjct: 37 SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK 82
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ I ++ P GAA G+L GD++I+V+G ++G ++ + Q V LTV
Sbjct: 29 IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTV 85
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 410
+ I ++ P GAA G+L GD++I+V+G ++G
Sbjct: 29 IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIG 62
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ I ++ P GAA G+L GD++I+V+G ++G
Sbjct: 29 IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIG 62
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS-TCQTYIKNSKN 140
P + I+ L P G A G L + D++I VNG+ + G L + NS N
Sbjct: 66 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSN 117
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 413
P + I+ L P G A G L + D++I VNG+ + G L
Sbjct: 66 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 104
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL 504
P + I+ L P G A G L + D++I VNG+ + G L
Sbjct: 66 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 104
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150
+ +A + G R G L++GD+I+ +NG ++ + Q +K +K ++ L V+P
Sbjct: 37 SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKG--MISLKVIP 94
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
+ +A + G R G L++GD+I+ +NG ++ + Q +K
Sbjct: 37 SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK 82
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
+ +A + G R G L++GD+I+ +NG ++ + Q +K
Sbjct: 37 SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK 82
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 89 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
+ T+ + + G A G L GD+II VNG S++G S I+NS T ++L+V
Sbjct: 60 MDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNS--DTTLELSV 116
Query: 149 VP 150
+P
Sbjct: 117 MP 118
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL 146
++ + + GAA + G+L IGD+++AVN V L + T +KN+ + +K+
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLKV 89
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL---------VGLPLSTCQTYIKILMKT 426
++ + + GAA + G+L IGD+++AVN V L L ++ Y+K+
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLKV---A 90
Query: 427 MPTSMF 432
PTSM+
Sbjct: 91 KPTSMY 96
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 66
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 136
VVI ++ P G A R G + GD++++V+G+ L+G + + +K
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 78
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
VVI ++ P G A R G + GD++++V+G+ L+G + + +K
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 78
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
VVI ++ P G A R G + GD++++V+G+ L+G + + +K
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 78
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL 146
++ + + GAA + G+L IGD+++AVN V L + T +KN+ + +K+
Sbjct: 42 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 97
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL---------VGLPLSTCQTYIKILMKT 426
++ + + GAA + G+L IGD+++AVN V L L ++ Y+K+
Sbjct: 42 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKV---A 98
Query: 427 MPTSMF 432
PTSM+
Sbjct: 99 KPTSMY 104
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 42 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 74
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL 146
P V+I++L GAA + G + GD I+AVN LV L + ++ ++T V L
Sbjct: 33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL 89
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC---------QTYIKILMK 425
P V+I++L GAA + G + GD I+AVN LV L + +T++ ++++
Sbjct: 33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 92
Query: 426 ---TMPTSMFRLLTGQETP 441
T + TG TP
Sbjct: 93 GPEGFTTHLETTFTGDGTP 111
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
P V+I++L GAA + G + GD I+AVN LV L
Sbjct: 33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 69
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 125
+ + + P GAA G+++ GD+++AVNGVSL G
Sbjct: 39 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 72
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 410
+ + + P GAA G+++ GD+++AVNGVSL G
Sbjct: 39 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 72
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ + + P GAA G+++ GD+++AVNGVSL G
Sbjct: 39 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 72
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 66 VVVPKAKGEILGVVIVESG----WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 121
V + K GE LG+ + W LP VI+ + P G +R G++ GD ++ V+GV
Sbjct: 28 VNIQKDPGESLGMTVAGGASHREWD--LPIYVIS-VEPGGVISRDGRIKTGDILLNVDGV 84
Query: 122 SLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVV 155
L + S +K + + V+K V +V
Sbjct: 85 ELTEVSRSEAVALLKRTSSSIVLKALEVKEGSIV 118
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 340 QMFAKKELQKEVVVPKAKGEILGVVIVESG----WGSMLPTVVIANLAPAGAAARCGQLN 395
++ + +K V + K GE LG+ + W LP VI+ + P G +R G++
Sbjct: 17 NLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWD--LPIYVIS-VEPGGVISRDGRIK 73
Query: 396 IGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETPVV 443
GD ++ V+GV L + S + +L +T + + + L +E +V
Sbjct: 74 TGDILLNVDGVELTEVSRSEA---VALLKRTSSSIVLKALEVKEGSIV 118
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 438 QETPVVVPKAKGEILGVVIVESG----WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 493
E V + K GE LG+ + W LP VI+ + P G +R G++ GD ++
Sbjct: 24 HEKVVNIQKDPGESLGMTVAGGASHREWD--LPIYVIS-VEPGGVISRDGRIKTGDILLN 80
Query: 494 VNGVSLVGLPLSTCQTYIK 512
V+GV L + S +K
Sbjct: 81 VDGVELTEVSRSEAVALLK 99
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
P V+I++L GAA + G + GD I+AVN LV L + ++ ++T V L +
Sbjct: 26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLIL 84
Score = 32.0 bits (71), Expect = 0.81, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
P V+I++L GAA + G + GD I+AVN LV L
Sbjct: 26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 62
Score = 32.0 bits (71), Expect = 0.81, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
P V+I++L GAA + G + GD I+AVN LV L
Sbjct: 26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 62
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVK 145
++ + + GAA + G+L IGD+++AVN V L + T +KN+ + +K
Sbjct: 29 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLK 83
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 29 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 61
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 29 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 61
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
P V+I++L GAA + G + GD I+AVN LV L + ++ ++T V L +
Sbjct: 28 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLIL 86
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
P V+I++L GAA + G + GD I+AVN LV L
Sbjct: 28 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 64
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
P V+I++L GAA + G + GD I+AVN LV L
Sbjct: 28 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 64
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL 146
++ + + GAA + G+L IGD+++AVN V L + T +KN+ + +K+
Sbjct: 40 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 95
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 40 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 72
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 40 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 72
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
P++ I + P GAAA+ G+L + D I+ VN V + + S +K + ++V+L V+
Sbjct: 31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG--SIVRLYVM 88
Query: 150 PCAP 153
P
Sbjct: 89 RRKP 92
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
P++ I + P GAAA+ G+L + D I+ VN V +
Sbjct: 31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
P++ I + P GAAA+ G+L + D I+ VN V +
Sbjct: 31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
P++ I + P GAAA+ G+L + D I+ VN V + + S +K + ++V+L V+
Sbjct: 31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG--SIVRLYVM 88
Query: 150 PCAP 153
P
Sbjct: 89 RRKP 92
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
P++ I + P GAAA+ G+L + D I+ VN V +
Sbjct: 31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
P++ I + P GAAA+ G+L + D I+ VN V +
Sbjct: 31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
>pdb|2M38|A Chain A, Ptb Domain Of Aida1
Length = 153
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 22/111 (19%)
Query: 212 QPSTE-------VDLFISTEKIMVLNTDLKEIMMDHALRTISYIA-DIGDLVVLMARRRF 263
Q STE + L +S + + ++ K I+ +H +R IS A D DL +
Sbjct: 52 QKSTEQMKKVPTIILSVSAKGVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFA----Y 107
Query: 264 VSQEADEPPKISRTPKMICHVFESDEAQFIAQ---SIGQAFQVAYMEFLKA 311
++++ ++ CHVF + + A+ ++GQAF+VAY L+A
Sbjct: 108 ITKDL-------KSNHHYCHVFTAFDVNLAAEIILTLGQAFEVAYQLALQA 151
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 346 ELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 405
E K V + KA+ LG + + +V+I+ + GAA + G L+ GD+++ +NG
Sbjct: 24 ETVKIVRIEKARDIPLGATVRNE-----MDSVIISRIVKGGAAEKSGLLHEGDEVLEING 78
Query: 406 VSLVG 410
+ + G
Sbjct: 79 IEIRG 83
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 89 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 125
+ +V+I+ + GAA + G L+ GD+++ +NG+ + G
Sbjct: 47 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRG 83
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 465 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ +V+I+ + GAA + G L+ GD+++ +NG+ + G
Sbjct: 47 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRG 83
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
P++ I + P GAAA+ G+L + D I+ VN V + + S +K + ++V+L V+
Sbjct: 32 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG--SIVRLYVM 89
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
P++ I + P GAAA+ G+L + D I+ VN V +
Sbjct: 32 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
P++ I + P GAAA+ G+L + D I+ VN V +
Sbjct: 32 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL 146
++ + + GAA + G+L IGD+++AVN V L + T +KN+ + +K+
Sbjct: 30 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 85
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 30 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 62
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 30 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 62
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 125
+ I ++ GAA + G+L + DQ+IAVNG +L+G
Sbjct: 57 IFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLG 90
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 410
+ I ++ GAA + G+L + DQ+IAVNG +L+G
Sbjct: 57 IFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLG 90
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ I ++ GAA + G+L + DQ+IAVNG +L+G
Sbjct: 57 IFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLG 90
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 126
+ + L G A RCG+L +GD ++ +NG S GL
Sbjct: 40 LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGL 74
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
+ + L G A RCG+L +GD ++ +NG S GL
Sbjct: 40 LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGL 74
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
+ + L G A RCG+L +GD ++ +NG S GL
Sbjct: 40 LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGL 74
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 79 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 127
++ G G + + ++ GAA G+L GDQ+++V+G SLVGL
Sbjct: 21 IVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS 69
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 364 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
++ G G + + ++ GAA G+L GDQ+++V+G SLVGL
Sbjct: 21 IVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS 69
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 455 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
++ G G + + ++ GAA G+L GDQ+++V+G SLVGL
Sbjct: 21 IVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS 69
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 79 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 127
++ G G + + ++ GAA G+L GDQ+++V+G SLVGL
Sbjct: 21 IVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS 69
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 364 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
++ G G + + ++ GAA G+L GDQ+++V+G SLVGL
Sbjct: 21 IVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS 69
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 455 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
++ G G + + ++ GAA G+L GDQ+++V+G SLVGL
Sbjct: 21 IVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS 69
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk P55
Subfamily Member 2
Length = 91
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 66 VVVPKAKGEILGVVI-VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124
V + K GE LGV VE G +VIA + G A+ G L++GD I VNG V
Sbjct: 10 VGIRKTAGEHLGVTFRVEGG------ELVIARILHGGMVAQQGLLHVGDIIKEVNG-QPV 62
Query: 125 GLPLSTCQTYIKNSKNQTVVKLTVVPCA 152
G Q ++N+ ++K+ P +
Sbjct: 63 GSDPRALQELLRNASGSVILKILSGPSS 90
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 94 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKN 137
+ LA G A R G++ IGD+I+ +NG + + S IKN
Sbjct: 53 VLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKN 96
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 379 IANLAPAGAAARCGQLNIGDQIIAVNG 405
+ LA G A R G++ IGD+I+ +NG
Sbjct: 53 VLRLAEDGPAERSGKMRIGDEILEING 79
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 470 IANLAPAGAAARCGQLNIGDQIIAVNG 496
+ LA G A R G++ IGD+I+ +NG
Sbjct: 53 VLRLAEDGPAERSGKMRIGDEILEING 79
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 79 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNS 138
++ G G + + ++ GAA G+L GDQ+++V+G SLVGL + +
Sbjct: 27 IVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM--T 84
Query: 139 KNQTVVKLTVVPCAPV 154
+ +VV L V +
Sbjct: 85 RTSSVVTLEVAKQGAI 100
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 364 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 412
++ G G + + ++ GAA G+L GDQ+++V+G SLVGL
Sbjct: 27 IVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS 75
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 455 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 503
++ G G + + ++ GAA G+L GDQ+++V+G SLVGL
Sbjct: 27 IVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS 75
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLT 147
++ + + GAA + G+L IGD+I+AVN V L + +KN+ + +K+
Sbjct: 34 SIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVA 90
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
++ + + GAA + G+L IGD+I+AVN V L
Sbjct: 34 SIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 66
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
++ + + GAA + G+L IGD+I+AVN V L
Sbjct: 34 SIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 66
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL 146
++ I + GAA + G+L IGD+++AVN +L + +KN+ + +K+
Sbjct: 34 SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKV 89
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
++ I + GAA + G+L IGD+++AVN +L
Sbjct: 34 SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
++ I + GAA + G+L IGD+++AVN +L
Sbjct: 34 SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 79 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNS 138
++ G G + + ++ GAA G+L GDQ+++V+G SLVGL + +
Sbjct: 27 IVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM--T 84
Query: 139 KNQTVVKLTVVPCAPV 154
+ +VV L V +
Sbjct: 85 RTSSVVTLEVAKQGAI 100
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 364 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
++ G G + + ++ GAA G+L GDQ+++V+G SLVGL
Sbjct: 27 IVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGL 74
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 455 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
++ G G + + ++ GAA G+L GDQ+++V+G SLVGL
Sbjct: 27 IVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGL 74
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 93 VIANLAPAGAAARCGQLNIGDQIIAVNGV 121
+I+ + A RCG L IGD+++A+NG+
Sbjct: 48 LISYIEADSPAERCGVLQIGDRVMAINGI 76
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 378 VIANLAPAGAAARCGQLNIGDQIIAVNGV 406
+I+ + A RCG L IGD+++A+NG+
Sbjct: 48 LISYIEADSPAERCGVLQIGDRVMAINGI 76
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 469 VIANLAPAGAAARCGQLNIGDQIIAVNGV 497
+I+ + A RCG L IGD+++A+NG+
Sbjct: 48 LISYIEADSPAERCGVLQIGDRVMAINGI 76
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 93 VIANLAPAGAAARCGQLNIGDQIIAVNGV 121
+I+ + A RCG L IGD+++A+NG+
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGI 67
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 378 VIANLAPAGAAARCGQLNIGDQIIAVNGV 406
+I+ + A RCG L IGD+++A+NG+
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGI 67
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 469 VIANLAPAGAAARCGQLNIGDQIIAVNGV 497
+I+ + A RCG L IGD+++A+NG+
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGI 67
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 32.0 bits (71), Expect = 0.77, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 94 IANLAPAGAAARCGQLNIGDQIIAVNGVS 122
+ LA G A R G++ +GDQII +NG S
Sbjct: 40 VLRLAEDGPAIRNGRMRVGDQIIEINGES 68
Score = 32.0 bits (71), Expect = 0.77, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 379 IANLAPAGAAARCGQLNIGDQIIAVNGVS 407
+ LA G A R G++ +GDQII +NG S
Sbjct: 40 VLRLAEDGPAIRNGRMRVGDQIIEINGES 68
Score = 32.0 bits (71), Expect = 0.77, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 470 IANLAPAGAAARCGQLNIGDQIIAVNGVS 498
+ LA G A R G++ +GDQII +NG S
Sbjct: 40 VLRLAEDGPAIRNGRMRVGDQIIEINGES 68
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 93 VIANLAPAGAAARCGQLNIGDQIIAVNGVS 122
++ + P A RCG L +GD+++++NG++
Sbjct: 48 LVCFIEPDSPAERCGLLQVGDRVLSINGIA 77
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 378 VIANLAPAGAAARCGQLNIGDQIIAVNGVS 407
++ + P A RCG L +GD+++++NG++
Sbjct: 48 LVCFIEPDSPAERCGLLQVGDRVLSINGIA 77
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 469 VIANLAPAGAAARCGQLNIGDQIIAVNGVS 498
++ + P A RCG L +GD+++++NG++
Sbjct: 48 LVCFIEPDSPAERCGLLQVGDRVLSINGIA 77
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL 146
+ I + P A CG+L +GD+I+++NG ++NS Q V+ L
Sbjct: 39 IFIKGIVPDSPAHLCGRLKVGDRILSLNGKD------------VRNSTEQAVIDL 81
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNG 405
+ I + P A CG+L +GD+I+++NG
Sbjct: 39 IFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNG 496
+ I + P A CG+L +GD+I+++NG
Sbjct: 39 IFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 429 TSMFRLLTGQETPVVVPKAKGEILGVVI---VESGWGSMLPTVVIANLAPAGAAARCGQL 485
+++ L G E V + G LG+ I E G G + I + P G+ A L
Sbjct: 11 STLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLG-----IYITGVDP-GSEAEGSGL 64
Query: 486 NIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHL 517
+GDQI+ VNG S + + +K + HL
Sbjct: 65 KVGDQILEVNGRSFLNILHDEAVRLLKSSRHL 96
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150
++ + + GAA + G+L +GD+++ VN SL + +KN+
Sbjct: 55 SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT------------ 102
Query: 151 CAPVVEVKIKRPDTKY 166
+ VV +K+ +P T Y
Sbjct: 103 -SEVVYLKVGKPTTIY 117
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
++ + + GAA + G+L +GD+++ VN SL
Sbjct: 55 SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 87
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
++ + + GAA + G+L +GD+++ VN SL
Sbjct: 55 SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 87
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 70 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL-VGLPL 128
+ GE LG+ +V + P V I +L G AA+ G+L+ D+++A+NG L G P
Sbjct: 12 RDSGEQLGIKLVRR---TDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPE 68
Query: 129 STCQTYIKNSKNQTVVKLTVV-PCAPVVEV 157
Q I+ S + V LT+ P P +E+
Sbjct: 69 LAAQI-IQASGER--VNLTIARPGKPEIEL 95
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 355 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+ GE LG+ +V + P V I +L G AA+ G+L+ D+++A+NG L
Sbjct: 12 RDSGEQLGIKLVRR---TDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDL 62
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 446 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
+ GE LG+ +V + P V I +L G AA+ G+L+ D+++A+NG L
Sbjct: 12 RDSGEQLGIKLVRR---TDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDL 62
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
P + I + P GAAA G+L + D I+ VN V + + S +K + ++V+L V
Sbjct: 39 PGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALKEAG--SIVRLYVR 96
Query: 150 PCAPVV 155
P++
Sbjct: 97 RRRPIL 102
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
P + I + P GAAA G+L + D I+ VN V +
Sbjct: 39 PGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 72
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
P + I + P GAAA G+L + D I+ VN V +
Sbjct: 39 PGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 72
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 93 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL 146
++A + G R G L++GD+I +NG+S+ + Q ++ + K+
Sbjct: 28 IVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI 81
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 378 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK-----ILMKTMPT 429
++A + G R G L++GD+I +NG+S+ + Q ++ I K +P+
Sbjct: 28 IVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS 84
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 469 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
++A + G R G L++GD+I +NG+S+ + Q ++
Sbjct: 28 IVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLR 71
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 416 CQTY--IKILMKTMPTSMFRLLTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANL 473
QTY I+ L+ + R L + G + GV + + G VV+
Sbjct: 47 AQTYDAIRKLLAVLDDPFTRFLEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTP 106
Query: 474 APAGAAARCGQLNIGDQIIAVNGVSLVGLPL 504
AP G A + G GD I+ V+G ++ GL L
Sbjct: 107 APGGPAEKAGA-RAGDVIVTVDGTAVKGLSL 136
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 73 GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQ 132
G + GV + + G VV+ AP G A + G GD I+ V+G ++ GL L
Sbjct: 82 GSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGA-RAGDVIVTVDGTAVKGLSLYDVS 140
Query: 133 TYIKNSKNQTVVKLTVVPCAP 153
++ + V + P AP
Sbjct: 141 DLLQGEADSQVEVVLHAPGAP 161
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTV 143
+ I+ + G A G+L GDQI++VNGV L +KN+ QTV
Sbjct: 40 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTV 90
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 331 SQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAAR 390
S E G+E +E ++ V+ + G ++ E G G + I+ + G A
Sbjct: 2 SPEFLGEE---DIPREPRRIVIHRGSTGLGFNIIGGEDGEG-----IFISFILAGGPADL 53
Query: 391 CGQLNIGDQIIAVNGVSL 408
G+L GDQI++VNGV L
Sbjct: 54 SGELRKGDQILSVNGVDL 71
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
+ I+ + G A G+L GDQI++VNGV L
Sbjct: 40 IFISFILAGGPADLSGELRKGDQILSVNGVDL 71
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 81 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNG 120
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG
Sbjct: 22 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLING 61
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 366 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNG 405
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG
Sbjct: 22 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLING 61
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 457 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNG 496
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG
Sbjct: 22 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLING 61
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTV 143
+ I+ + G A G+L GDQI++VNGV L +KN+ QTV
Sbjct: 40 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTV 90
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 331 SQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAAR 390
S E G+E +E ++ V+ + G +V E G G + I+ + G A
Sbjct: 2 SPEFLGEE---DIPREPRRIVIHRGSTGLGFNIVGGEDGEG-----IFISFILAGGPADL 53
Query: 391 CGQLNIGDQIIAVNGVSL 408
G+L GDQI++VNGV L
Sbjct: 54 SGELRKGDQILSVNGVDL 71
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
+ I+ + G A G+L GDQI++VNGV L
Sbjct: 40 IFISFILAGGPADLSGELRKGDQILSVNGVDL 71
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTV 143
+ I+ + G A G+L GDQI++VNGV L +KN+ QTV
Sbjct: 32 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTV 82
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 345 KELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 404
+E ++ V+ + G +V E G G + I+ + G A G+L GDQI++VN
Sbjct: 5 REPRRIVIHRGSTGLGFNIVGGEXGEG-----IFISFILAGGPADLSGELRKGDQILSVN 59
Query: 405 GVSL 408
GV L
Sbjct: 60 GVDL 63
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
+ I+ + G A G+L GDQI++VNGV L
Sbjct: 32 IFISFILAGGPADLSGELRKGDQILSVNGVDL 63
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTV 143
+ I+ + G A G+L GDQI++VNGV L +KN+ QTV
Sbjct: 37 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTV 87
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 345 KELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 404
+E ++ V+ + G +V E G G + I+ + G A G+L GDQI++VN
Sbjct: 10 REPRRIVIHRGSTGLGFNIVGGEXGEG-----IFISFILAGGPADLSGELRKGDQILSVN 64
Query: 405 GVSL 408
GV L
Sbjct: 65 GVDL 68
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
+ I+ + G A G+L GDQI++VNGV L
Sbjct: 37 IFISFILAGGPADLSGELRKGDQILSVNGVDL 68
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 81 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNG 120
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG
Sbjct: 33 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLING 72
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 366 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNG 405
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG
Sbjct: 33 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLING 72
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 457 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNG 496
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG
Sbjct: 33 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLING 72
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV 149
++ + + P G AA G++ IGD+++ +N L G IK + ++ VKL +
Sbjct: 52 SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSK--VKLVFI 108
Score = 28.9 bits (63), Expect = 7.0, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 421
++ + + P G AA G++ IGD+++ +N L G IK
Sbjct: 52 SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIK 97
Score = 28.9 bits (63), Expect = 7.0, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512
++ + + P G AA G++ IGD+++ +N L G IK
Sbjct: 52 SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIK 97
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 81 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNG 120
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG
Sbjct: 35 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLING 74
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 366 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNG 405
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG
Sbjct: 35 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLING 74
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 457 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNG 496
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG
Sbjct: 35 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLING 74
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 125
+ I+ ++ G AAR G + +GD+++ VNGV+L G
Sbjct: 48 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQG 80
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 410
+ I+ ++ G AAR G + +GD+++ VNGV+L G
Sbjct: 48 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQG 80
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ I+ ++ G AAR G + +GD+++ VNGV+L G
Sbjct: 48 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQG 80
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 59 HVFESDEVVVPKAKGEILGVVIVESG------WGSMLPTVVIANLAPAGAAARCGQLNIG 112
H++E V + +A G G+ I SG + S ++VI+++ G A GQL
Sbjct: 7 HIWEQHTVTLHRAPGFGFGIAI--SGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQEN 62
Query: 113 DQIIAVNGVSL 123
D++ VNGVS+
Sbjct: 63 DRVAMVNGVSM 73
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 125
+ I+ ++ G AAR G + +GD+++ VNGV+L G
Sbjct: 36 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQG 68
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 410
+ I+ ++ G AAR G + +GD+++ VNGV+L G
Sbjct: 36 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQG 68
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ I+ ++ G AAR G + +GD+++ VNGV+L G
Sbjct: 36 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQG 68
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 85 WGSMLPT-VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQ 141
+G L + + + ++ AAR G + GD ++ +NG + L+ +T I+ SK +
Sbjct: 17 YGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGK 74
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 457 VESGWGSML-------PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQT 509
+ESG+G + ++I + G+A R G+L+ GD+++ V+G+ + G T +
Sbjct: 18 MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAG---KTHRY 74
Query: 510 YIKVNHH 516
I + HH
Sbjct: 75 VIDLMHH 81
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 81 VESGWGSML-------PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 125
+ESG+G + ++I + G+A R G+L+ GD+++ V+G+ + G
Sbjct: 18 MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAG 69
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 366 VESGWGSML-------PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 410
+ESG+G + ++I + G+A R G+L+ GD+++ V+G+ + G
Sbjct: 18 MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAG 69
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 346 ELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 405
E +K V+ + G +V E G G + ++ + G A G+L GDQI++VNG
Sbjct: 3 EPRKVVLHKGSTGLGFNIVGGEDGEG-----IFVSFILAGGPADLSGELQRGDQILSVNG 57
Query: 406 VSLVG 410
+ L G
Sbjct: 58 IDLRG 62
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 125
+ ++ + G A G+L GDQI++VNG+ L G
Sbjct: 29 IFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 62
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 501
+ ++ + G A G+L GDQI++VNG+ L G
Sbjct: 29 IFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 62
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 86 GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVK 145
GS + ++ + +G AA+ G L I D+II VNG L K +K VV+
Sbjct: 37 GSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQ 96
Query: 146 L 146
+
Sbjct: 97 V 97
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 371 GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
GS + ++ + +G AA+ G L I D+II VNG L
Sbjct: 37 GSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDL 74
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 462 GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
GS + ++ + +G AA+ G L I D+II VNG L
Sbjct: 37 GSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDL 74
>pdb|4DG5|A Chain A, Crystal Structure Of Staphylococcal Phosphoglycerate
Kinase
Length = 403
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 16 HALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTP--KMICHVFESDEVVVPKAKG 73
AL TI YI + G +VL + V +E+D+ K++ P + + + + V VP+ +G
Sbjct: 46 QALPTIQYIIEQGGKIVLFSHLGKVKEESDK-AKLTLRPVAEDLSKKLDKEVVFVPETRG 104
Query: 74 EILGVVIVESGWGSML 89
E L I + G +L
Sbjct: 105 EKLEAAIKDLKEGDVL 120
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 435 LTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPA 476
LTGQ P V P+ + ES GS +P ++ +L P+
Sbjct: 35 LTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMVDLEPS 76
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 343 AKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 402
A L E+V K G LG+ + + + + I + PA R G L+ GD I++
Sbjct: 13 ASGPLMVEIV--KTPGSALGISLTTTSLRNK-SVITIDRIKPASVVDRSGALHPGDHILS 69
Query: 403 VNGVSL 408
++G S+
Sbjct: 70 IDGTSM 75
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 70 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 123
K G LG+ + + + + I + PA R G L+ GD I++++G S+
Sbjct: 23 KTPGSALGISLTTTSLRNK-SVITIDRIKPASVVDRSGALHPGDHILSIDGTSM 75
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 446 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
K G LG+ + + + + I + PA R G L+ GD I++++G S+
Sbjct: 23 KTPGSALGISLTTTSLRNK-SVITIDRIKPASVVDRSGALHPGDHILSIDGTSM 75
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLT 436
+ + + P G A++ G + G++++++NG SL G +T + IL + ++T
Sbjct: 44 ITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKG---TTHHDALAILRQAREPRQAVIVT 100
Query: 437 GQETPVVVP 445
+ TP +P
Sbjct: 101 RKLTPEAMP 109
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 126
+ ++ + GAAA G+L GD+I++VNG L L
Sbjct: 41 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 75
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
+ ++ + GAAA G+L GD+I++VNG L L
Sbjct: 41 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 75
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
+ ++ + GAAA G+L GD+I++VNG L L
Sbjct: 41 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 75
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 126
+ ++ + GAAA G+L GD+I++VNG L L
Sbjct: 39 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 73
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
+ ++ + GAAA G+L GD+I++VNG L L
Sbjct: 39 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 73
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
+ ++ + GAAA G+L GD+I++VNG L L
Sbjct: 39 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 73
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+ V V K + LG+ I + G + +P ++I+ + P AA + L +GD I++VNG L
Sbjct: 5 RRVRVVKQEAGGLGISI-KGGRENRMP-ILISKIFPGLAADQSRALRLGDAILSVNGTDL 62
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 126
+ ++ + GAAA G+L GD+I++VNG L L
Sbjct: 49 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 83
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 411
+ ++ + GAAA G+L GD+I++VNG L L
Sbjct: 49 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 83
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502
+ ++ + GAAA G+L GD+I++VNG L L
Sbjct: 49 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 83
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKN 140
+ + +L P AAA G++ D+I+ V+ V++ G+ S ++N+ N
Sbjct: 46 IYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGN 94
>pdb|3GGE|A Chain A, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
pdb|3GGE|B Chain B, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
pdb|3GGE|C Chain C, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
Length = 95
Score = 28.5 bits (62), Expect = 8.3, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 345 KELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 404
K ++KEV V K++ + LG+ I ++G G I + G + +GD I ++N
Sbjct: 3 KGIEKEVNVYKSE-DSLGLTITDNGVGYAF----IKRIKDGGVIDSVKTICVGDHIESIN 57
Query: 405 GVSLVG 410
G ++VG
Sbjct: 58 GENIVG 63
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 28.5 bits (62), Expect = 8.4, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 123
+ I+ + P AA+ G++ GD+II +NG+ +
Sbjct: 50 IYISEIDPNSIAAKDGRIREGDRIIQINGIEV 81
Score = 28.5 bits (62), Expect = 8.4, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 408
+ I+ + P AA+ G++ GD+II +NG+ +
Sbjct: 50 IYISEIDPNSIAAKDGRIREGDRIIQINGIEV 81
Score = 28.5 bits (62), Expect = 8.4, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 468 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499
+ I+ + P AA+ G++ GD+II +NG+ +
Sbjct: 50 IYISEIDPNSIAAKDGRIREGDRIIQINGIEV 81
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 28.5 bits (62), Expect = 8.4, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 94 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVV 144
IA + P G+A + G+L G Q++ NG+ L Q+ I + +
Sbjct: 53 IAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEI 103
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 55 KMICHVFESDEVVVPKAKGEILGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLN 110
++I V + +PK G +LG+ +V G M I + A G L
Sbjct: 18 RLIGRVILNKRTTMPKESGALLGLKVVG---GKMTDLGRLGAFITKVKKGSLADVVGHLR 74
Query: 111 IGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148
GD+++ NG L G I SK++ V++ V
Sbjct: 75 AGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIV 112
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 28.5 bits (62), Expect = 9.9, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 345 KELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 404
+E +K ++ + G +V E G G + ++ + G A G+L GD+I++VN
Sbjct: 11 REPRKIILHKGSTGLGFNIVGGEDGEG-----IFVSFILAGGPADLSGELRRGDRILSVN 65
Query: 405 GVSL 408
GV+L
Sbjct: 66 GVNL 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,053,330
Number of Sequences: 62578
Number of extensions: 558793
Number of successful extensions: 1725
Number of sequences better than 100.0: 155
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1282
Number of HSP's gapped (non-prelim): 448
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)