Query psy3479
Match_columns 518
No_of_seqs 335 out of 2973
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 17:46:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3479.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3479hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3605|consensus 100.0 2.3E-57 5.1E-62 460.1 8.5 213 8-248 523-803 (829)
2 KOG3209|consensus 100.0 6.1E-43 1.3E-47 357.8 32.3 408 65-516 347-828 (984)
3 KOG3605|consensus 100.0 3.5E-41 7.7E-46 342.5 10.9 316 182-514 466-803 (829)
4 KOG3209|consensus 100.0 1.3E-37 2.8E-42 318.8 29.3 348 65-516 487-973 (984)
5 KOG3580|consensus 99.9 1.8E-25 4E-30 225.9 22.7 91 59-153 5-99 (1027)
6 KOG3580|consensus 99.6 1.5E-14 3.3E-19 147.4 18.2 85 65-159 201-286 (1027)
7 PF00595 PDZ: PDZ domain (Also 99.6 4.5E-15 9.7E-20 119.0 10.5 81 65-149 1-81 (81)
8 cd01208 X11 X11 Phosphotyrosin 99.6 4.4E-16 9.4E-21 135.6 3.3 63 3-65 62-131 (156)
9 PRK10139 serine endoprotease; 99.4 2.6E-12 5.7E-17 135.4 17.3 151 359-515 267-436 (455)
10 KOG3550|consensus 99.4 3.8E-13 8.3E-18 114.6 7.5 85 65-154 93-177 (207)
11 TIGR02037 degP_htrA_DO peripla 99.4 3.2E-12 6.9E-17 134.8 15.9 150 359-514 234-407 (428)
12 PRK10942 serine endoprotease; 99.4 4.8E-12 1E-16 134.1 17.3 151 359-515 288-454 (473)
13 PRK10779 zinc metallopeptidase 99.3 6.9E-12 1.5E-16 132.7 12.0 127 377-514 128-266 (449)
14 PF00595 PDZ: PDZ domain (Also 99.3 1.5E-11 3.2E-16 98.5 9.3 79 350-430 1-79 (81)
15 TIGR00054 RIP metalloprotease 99.3 4E-11 8.7E-16 125.6 13.9 121 375-514 128-248 (420)
16 KOG3550|consensus 99.1 1.1E-10 2.5E-15 99.6 7.6 80 348-431 91-171 (207)
17 cd00992 PDZ_signaling PDZ doma 99.1 6.4E-10 1.4E-14 89.0 11.2 79 65-148 3-81 (82)
18 cd00136 PDZ PDZ domain, also c 99.1 7.9E-10 1.7E-14 85.7 9.6 68 75-148 2-69 (70)
19 KOG3549|consensus 99.1 2.5E-10 5.5E-15 110.2 7.3 83 65-151 57-139 (505)
20 smart00228 PDZ Domain present 99.1 2.1E-09 4.6E-14 86.3 11.5 81 65-151 4-84 (85)
21 KOG3571|consensus 99.0 4.6E-10 1E-14 113.4 8.4 104 45-151 235-339 (626)
22 PRK10942 serine endoprotease; 99.0 1.4E-08 3E-13 107.9 20.1 62 90-154 311-372 (473)
23 KOG3553|consensus 99.0 1.2E-10 2.5E-15 92.5 2.1 90 55-151 11-116 (124)
24 PF13180 PDZ_2: PDZ domain; PD 99.0 6.8E-09 1.5E-13 83.2 11.6 79 75-159 2-80 (82)
25 KOG3551|consensus 99.0 6.4E-10 1.4E-14 109.0 6.4 85 64-152 86-170 (506)
26 TIGR02037 degP_htrA_DO peripla 99.0 5.9E-09 1.3E-13 110.1 13.5 143 90-248 257-407 (428)
27 KOG1892|consensus 98.9 2.6E-09 5.7E-14 114.6 9.3 82 65-150 936-1018(1629)
28 cd00988 PDZ_CTP_protease PDZ d 98.9 2.5E-08 5.5E-13 80.3 11.7 79 75-160 3-82 (85)
29 KOG3651|consensus 98.9 1.1E-08 2.4E-13 97.3 9.4 84 62-149 4-87 (429)
30 cd00136 PDZ PDZ domain, also c 98.8 1.3E-08 2.9E-13 78.7 8.3 60 451-515 2-61 (70)
31 cd00992 PDZ_signaling PDZ doma 98.8 2.8E-08 6E-13 79.4 10.0 75 349-426 2-76 (82)
32 KOG3553|consensus 98.8 1.1E-08 2.5E-13 81.3 6.3 63 451-515 36-107 (124)
33 PRK10139 serine endoprotease; 98.8 8.8E-08 1.9E-12 101.3 15.0 134 90-247 290-434 (455)
34 cd01208 X11 X11 Phosphotyrosin 98.7 7.7E-09 1.7E-13 90.6 4.3 128 183-314 22-156 (156)
35 KOG3551|consensus 98.7 1.5E-08 3.3E-13 99.5 5.4 82 348-431 85-166 (506)
36 smart00228 PDZ Domain present 98.7 1.7E-07 3.8E-12 75.1 10.2 77 349-429 3-79 (85)
37 KOG3549|consensus 98.7 2.7E-08 5.9E-13 96.4 6.2 83 348-433 55-138 (505)
38 KOG0609|consensus 98.6 1.1E-07 2.4E-12 98.1 8.0 80 66-151 126-205 (542)
39 PRK10779 zinc metallopeptidase 98.6 3.6E-07 7.8E-12 96.9 12.3 126 92-246 128-264 (449)
40 PF13180 PDZ_2: PDZ domain; PD 98.5 1.7E-07 3.8E-12 75.0 6.5 56 451-512 2-57 (82)
41 cd00988 PDZ_CTP_protease PDZ d 98.5 3.2E-07 6.9E-12 73.8 7.5 58 450-513 2-59 (85)
42 KOG1892|consensus 98.5 2.1E-07 4.5E-12 100.4 7.9 83 349-433 935-1018(1629)
43 cd00990 PDZ_glycyl_aminopeptid 98.5 9.7E-07 2.1E-11 70.1 9.9 73 76-159 3-75 (80)
44 cd00991 PDZ_archaeal_metallopr 98.5 1.3E-06 2.7E-11 69.5 10.5 68 89-159 9-76 (79)
45 COG0793 Prc Periplasmic protea 98.5 6.1E-07 1.3E-11 93.3 10.0 89 66-161 93-183 (406)
46 cd00989 PDZ_metalloprotease PD 98.4 2.3E-06 5.1E-11 67.7 10.5 74 76-158 3-76 (79)
47 KOG3552|consensus 98.4 2.3E-07 5E-12 100.0 5.7 85 54-150 47-131 (1298)
48 PRK11186 carboxy-terminal prot 98.4 1.1E-06 2.3E-11 96.2 10.9 82 74-161 244-333 (667)
49 PLN00049 carboxyl-terminal pro 98.4 2.4E-06 5.2E-11 88.9 12.2 86 74-161 85-171 (389)
50 KOG3938|consensus 98.4 5.2E-07 1.1E-11 84.7 6.0 80 65-149 129-208 (334)
51 KOG3606|consensus 98.4 9.2E-07 2E-11 83.2 7.6 84 65-150 161-252 (358)
52 TIGR00054 RIP metalloprotease 98.3 3.1E-06 6.8E-11 88.9 11.4 121 89-247 127-247 (420)
53 KOG3571|consensus 98.3 1.1E-06 2.5E-11 89.3 7.6 79 348-426 250-328 (626)
54 KOG3651|consensus 98.3 1.6E-06 3.6E-11 82.7 7.5 73 443-517 9-81 (429)
55 TIGR00225 prc C-terminal pepti 98.3 6E-06 1.3E-10 84.3 11.2 72 74-152 51-122 (334)
56 cd00986 PDZ_LON_protease PDZ d 98.2 1.1E-05 2.3E-10 64.0 10.0 63 91-157 9-71 (79)
57 cd01209 SHC SHC phosphotyrosin 98.2 4.8E-07 1.1E-11 79.8 2.3 49 3-65 87-139 (160)
58 cd00991 PDZ_archaeal_metallopr 98.2 2.7E-06 6E-11 67.5 6.4 46 466-514 10-55 (79)
59 cd00990 PDZ_glycyl_aminopeptid 98.2 4E-06 8.6E-11 66.6 6.5 53 451-511 2-54 (80)
60 cd00989 PDZ_metalloprotease PD 98.1 9.9E-06 2.1E-10 64.0 7.8 56 360-423 2-57 (79)
61 KOG3542|consensus 98.1 4.3E-06 9.3E-11 87.6 6.6 80 65-150 538-618 (1283)
62 cd00987 PDZ_serine_protease PD 98.1 2E-05 4.4E-10 63.9 9.4 60 90-152 24-83 (90)
63 KOG3606|consensus 98.1 6.3E-06 1.4E-10 77.7 6.6 82 345-426 156-245 (358)
64 KOG3542|consensus 97.9 7.3E-06 1.6E-10 85.9 3.7 68 447-517 545-612 (1283)
65 TIGR01713 typeII_sec_gspC gene 97.9 9.9E-05 2.2E-09 72.2 11.3 80 75-159 178-257 (259)
66 cd00986 PDZ_LON_protease PDZ d 97.9 2.6E-05 5.5E-10 61.8 5.9 43 467-513 9-51 (79)
67 cd00987 PDZ_serine_protease PD 97.9 2.3E-05 5E-10 63.5 5.7 46 466-514 24-69 (90)
68 TIGR00225 prc C-terminal pepti 97.9 2.7E-05 5.9E-10 79.5 7.2 59 449-513 50-108 (334)
69 PLN00049 carboxyl-terminal pro 97.8 4E-05 8.7E-10 79.8 7.9 63 450-513 85-148 (389)
70 KOG4371|consensus 97.8 5.7E-05 1.2E-09 83.1 8.6 152 65-248 1150-1318(1332)
71 KOG3552|consensus 97.8 2.7E-05 6E-10 84.5 5.9 76 348-433 56-131 (1298)
72 KOG0609|consensus 97.8 5.9E-05 1.3E-09 78.3 7.2 84 346-433 121-204 (542)
73 COG0793 Prc Periplasmic protea 97.7 6E-05 1.3E-09 78.5 6.7 60 449-513 99-158 (406)
74 KOG4371|consensus 97.7 7.9E-05 1.7E-09 82.0 7.0 154 349-512 1149-1316(1332)
75 TIGR02038 protease_degS peripl 97.5 0.00036 7.8E-09 71.7 9.5 67 90-159 278-344 (351)
76 PF04495 GRASP55_65: GRASP55/6 97.5 0.00099 2.1E-08 58.6 10.9 98 73-175 25-130 (138)
77 KOG4407|consensus 97.5 0.00014 3.1E-09 81.5 6.2 122 349-515 47-191 (1973)
78 PRK11186 carboxy-terminal prot 97.5 0.00015 3.3E-09 79.6 6.5 58 450-513 244-307 (667)
79 TIGR02860 spore_IV_B stage IV 97.5 0.00077 1.7E-08 69.3 11.1 91 73-174 95-197 (402)
80 PRK10898 serine endoprotease; 97.5 0.00055 1.2E-08 70.3 10.1 67 90-159 279-345 (353)
81 KOG3938|consensus 97.4 0.00018 3.9E-09 67.9 5.2 83 347-435 126-208 (334)
82 KOG3834|consensus 97.4 0.00086 1.9E-08 67.8 10.1 134 377-515 17-156 (462)
83 TIGR03279 cyano_FeS_chp putati 97.4 0.0017 3.7E-08 67.2 12.1 132 94-248 2-138 (433)
84 KOG3129|consensus 97.3 0.0013 2.9E-08 60.3 8.7 74 89-165 138-212 (231)
85 TIGR01713 typeII_sec_gspC gene 97.2 0.00053 1.1E-08 67.1 5.4 59 450-513 177-235 (259)
86 PF04495 GRASP55_65: GRASP55/6 97.2 0.0011 2.3E-08 58.4 6.6 65 449-516 25-91 (138)
87 TIGR02038 protease_degS peripl 97.1 0.00056 1.2E-08 70.3 5.3 45 466-513 278-322 (351)
88 COG3975 Predicted protease wit 97.1 0.0013 2.9E-08 68.5 7.6 70 75-160 452-521 (558)
89 PRK10898 serine endoprotease; 97.1 0.00086 1.9E-08 68.9 6.4 45 466-513 279-323 (353)
90 KOG0606|consensus 97.0 0.0016 3.4E-08 73.2 8.0 83 65-151 629-716 (1205)
91 TIGR03279 cyano_FeS_chp putati 97.0 0.001 2.3E-08 68.8 5.9 127 379-513 2-137 (433)
92 KOG0606|consensus 96.8 0.0016 3.5E-08 73.1 5.6 72 446-518 633-709 (1205)
93 PF14685 Tricorn_PDZ: Tricorn 96.8 0.021 4.4E-07 46.0 10.4 70 76-153 3-81 (88)
94 cd01273 CED-6 CED-6 Phosphotyr 96.7 0.00051 1.1E-08 60.9 1.0 50 4-65 68-120 (142)
95 KOG1320|consensus 96.7 0.015 3.3E-07 60.8 11.8 45 467-514 399-443 (473)
96 KOG1738|consensus 96.7 0.0024 5.2E-08 67.7 5.4 81 66-152 204-285 (638)
97 PRK09681 putative type II secr 96.4 0.015 3.2E-07 57.0 8.4 53 104-159 221-273 (276)
98 KOG3129|consensus 96.3 0.0074 1.6E-07 55.5 5.7 48 466-514 139-187 (231)
99 TIGR02860 spore_IV_B stage IV 96.3 0.0082 1.8E-07 61.8 6.7 57 449-515 95-159 (402)
100 KOG4407|consensus 96.3 0.0056 1.2E-07 69.3 5.7 131 63-257 46-199 (1973)
101 COG3975 Predicted protease wit 96.2 0.0034 7.3E-08 65.5 3.1 41 451-497 452-492 (558)
102 KOG3532|consensus 96.0 0.02 4.3E-07 61.1 7.4 81 60-149 372-452 (1051)
103 KOG1421|consensus 95.9 0.064 1.4E-06 57.6 10.6 130 377-515 305-448 (955)
104 PF12812 PDZ_1: PDZ-like domai 95.8 0.039 8.4E-07 43.5 6.7 45 469-516 33-77 (78)
105 cd01267 CED6_AIDA1b Phosphotyr 95.7 0.0053 1.2E-07 53.8 1.7 48 4-64 58-108 (132)
106 COG0265 DegQ Trypsin-like seri 95.7 0.11 2.4E-06 53.4 11.6 68 89-159 269-336 (347)
107 KOG1421|consensus 95.6 0.12 2.5E-06 55.7 11.5 125 376-515 772-907 (955)
108 cd01274 AIDA-1b AIDA-1b Phosph 95.5 0.0062 1.3E-07 52.8 1.4 47 3-63 53-102 (127)
109 COG0265 DegQ Trypsin-like seri 95.1 0.032 7E-07 57.3 5.5 46 466-514 270-315 (347)
110 KOG1738|consensus 94.2 0.058 1.3E-06 57.5 4.8 64 447-514 210-273 (638)
111 KOG3532|consensus 93.9 0.15 3.2E-06 54.8 7.0 74 350-430 377-450 (1051)
112 COG3480 SdrC Predicted secrete 93.8 0.48 1E-05 46.8 9.7 58 90-151 130-187 (342)
113 PF14685 Tricorn_PDZ: Tricorn 93.7 0.2 4.4E-06 40.3 5.9 54 376-431 13-76 (88)
114 KOG1320|consensus 93.6 0.26 5.6E-06 51.8 8.2 68 90-160 398-465 (473)
115 COG3031 PulC Type II secretory 93.1 0.36 7.8E-06 45.6 7.3 70 69-155 200-269 (275)
116 PRK09681 putative type II secr 91.9 0.23 4.9E-06 48.8 4.7 38 472-512 210-250 (276)
117 cd01270 DYC-1 DYC-1 (DYB-1 bin 91.3 0.12 2.7E-06 45.2 1.9 49 3-64 67-118 (140)
118 KOG3834|consensus 91.2 1.1 2.4E-05 46.0 8.7 118 89-228 14-137 (462)
119 COG3480 SdrC Predicted secrete 90.4 0.44 9.4E-06 47.1 5.0 44 467-514 131-174 (342)
120 PF00640 PID: Phosphotyrosine 89.4 0.2 4.3E-06 43.9 1.7 49 4-65 65-117 (140)
121 cd01268 Numb Numb Phosphotyros 87.2 0.31 6.7E-06 42.8 1.4 49 3-64 62-113 (138)
122 smart00462 PTB Phosphotyrosine 87.0 0.34 7.3E-06 42.1 1.6 49 3-64 56-107 (134)
123 PF12812 PDZ_1: PDZ-like domai 84.8 2.6 5.7E-05 33.1 5.4 46 377-425 32-77 (78)
124 cd01216 Fe65 Fe65 Phosphotyros 81.0 0.58 1.3E-05 40.3 0.4 49 2-64 51-101 (123)
125 cd00934 PTB Phosphotyrosine-bi 80.2 1 2.2E-05 38.3 1.7 48 4-64 55-105 (123)
126 COG0750 Predicted membrane-ass 77.3 3.9 8.4E-05 42.3 5.3 41 469-512 132-172 (375)
127 cd01209 SHC SHC phosphotyrosin 73.3 3.4 7.4E-05 37.0 3.1 77 217-307 77-159 (160)
128 COG3031 PulC Type II secretory 70.5 12 0.00027 35.6 6.2 52 357-425 203-254 (275)
129 PF11874 DUF3394: Domain of un 67.9 8.5 0.00018 35.4 4.5 38 75-118 112-149 (183)
130 cd01212 JIP JNK-interacting pr 67.0 4.1 8.8E-05 36.3 2.2 48 4-64 58-114 (148)
131 COG0750 Predicted membrane-ass 66.5 13 0.00028 38.3 6.3 57 93-150 132-188 (375)
132 KOG2921|consensus 66.1 8.5 0.00018 39.3 4.4 45 466-513 220-265 (484)
133 PF11874 DUF3394: Domain of un 65.0 10 0.00022 34.9 4.5 38 451-494 112-149 (183)
134 cd01215 Dab Disabled (Dab) Pho 59.0 2.9 6.2E-05 36.7 -0.2 24 3-26 65-88 (139)
135 KOG0792|consensus 58.3 4.6 0.0001 46.2 1.1 75 66-140 708-799 (1144)
136 KOG1945|consensus 52.3 6 0.00013 39.8 0.7 83 65-150 102-188 (377)
137 cd06919 Asp_decarbox Aspartate 36.0 93 0.002 26.1 5.2 45 65-118 42-87 (111)
138 PRK05449 aspartate alpha-decar 33.0 1.1E+02 0.0023 26.4 5.2 45 65-118 43-88 (126)
139 COG0853 PanD Aspartate 1-decar 31.7 1.1E+02 0.0024 26.1 5.0 56 64-131 41-97 (126)
140 KOG0792|consensus 31.6 26 0.00056 40.5 1.7 67 449-516 715-799 (1144)
141 TIGR00223 panD L-aspartate-alp 31.3 1.2E+02 0.0026 26.0 5.2 45 65-118 43-88 (126)
142 KOG1945|consensus 31.1 30 0.00064 35.0 1.8 81 349-430 101-185 (377)
143 PF02261 Asp_decarbox: Asparta 30.2 1.1E+02 0.0023 26.0 4.7 46 64-118 42-88 (116)
144 cd01271 Fe65_C Fe65 C-terminal 29.8 20 0.00044 30.7 0.4 48 2-64 51-102 (124)
145 cd01269 PLX Pollux (PLX) Phosp 28.5 20 0.00042 30.7 0.1 50 3-62 55-107 (129)
146 PRK13810 orotate phosphoribosy 26.4 1.1E+02 0.0025 28.2 4.8 35 106-140 116-150 (187)
147 PRK13810 orotate phosphoribosy 25.5 71 0.0015 29.6 3.2 33 483-515 117-149 (187)
148 KOG2921|consensus 25.2 71 0.0015 32.9 3.3 46 90-137 220-265 (484)
149 COG5233 GRH1 Peripheral Golgi 20.4 62 0.0013 32.3 1.8 31 469-500 66-96 (417)
No 1
>KOG3605|consensus
Probab=100.00 E-value=2.3e-57 Score=460.09 Aligned_cols=213 Identities=59% Similarity=0.887 Sum_probs=196.8
Q ss_pred hhhhhhhhccccccceeeecCcEEEEEEeecCCCCCCC---C----CCCCCCCCccccccccce----------------
Q psy3479 8 VHKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEAD---E----PPKISRTPKMICHVFESD---------------- 64 (518)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~---~----~~~~~~~~~~~~~vf~s~---------------- 64 (518)
.+||+||||+||||||||||||+||||||||+.+.... + .++.+|+||||||||+|+
T Consensus 523 dlqe~mmdhaLrtisyiadIg~lvvlMarrr~~~~s~~~~~~~~~~~~~~~rtpKMICHVFESdeAQfIAQSIGQAFqVA 602 (829)
T KOG3605|consen 523 DLQETMMDHALRTISYIADIGNVVVLMARRRDVRSSSEDCSEDIDPAQKGNRTPKMICHVFESDEAQFIAQSIGQAFQVA 602 (829)
T ss_pred hhHHhhhhhhhhhhHHHhhhhHHHHHHHHhhcccccccccCCCCCcccccCCCcceEEEEeccchHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999765332 2 246789999999999998
Q ss_pred ---------------------------------------------eEEEEccCCcceeEEEEecCCcCCCCcEEEEEecC
Q psy3479 65 ---------------------------------------------EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAP 99 (518)
Q Consensus 65 ---------------------------------------------~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~ 99 (518)
||+|+|.+|++||+.|++++||+.+|+++|+++++
T Consensus 603 Y~EFLrANGI~~e~l~~q~dYqevlNsQei~gDeLe~FakkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~ 682 (829)
T KOG3605|consen 603 YMEFLRANGIEPEDLVSQMDYQEVLNSQEIFGDELEHFAKKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMH 682 (829)
T ss_pred HHHHHHHcCCCchHhhhhcchhhccchhhhhccHHHHhhhhcccceeeeecccCceeeEEEEecCccccchHHHHHhccc
Confidence 49999999999999999999999999999999999
Q ss_pred CChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCceeEEEeeCCCCccccceEecCCCCCC
Q psy3479 100 AGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTKYQLGFSVQNGVAPE 179 (518)
Q Consensus 100 gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~~~~~~rp~~~~~~g~~v~~~~~~~ 179 (518)
+|||+|+|+|.+||+|++|||++|+|+++..|+.+||+.++++.|+|+|++|||+++++|+||+.+|||||+|++|++=
T Consensus 683 ~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~cpPV~~V~I~RPd~kyQLGFSVQNGiIC- 761 (829)
T KOG3605|consen 683 GGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSCPPVTTVLIRRPDLRYQLGFSVQNGIIC- 761 (829)
T ss_pred CChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEecCCCceEEEeecccchhhccceeeCcEee-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988772
Q ss_pred CCCCCCCcccccccccceeEeeecccCCCCCCCCCCccceeeeceEEEEcccchhhhhHHHHHHHhhcc
Q psy3479 180 GETQPSTEVDLFISTEKIMVLNTDLKAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYI 248 (518)
Q Consensus 180 ~~~~P~~~~~~~~s~~~~gi~v~~i~~p~g~a~~~~~g~L~~gD~il~Vng~~~~~~~~~eav~~lk~~ 248 (518)
+-. -||-|.+. ++++|.+|++|||.++-.+.|+..+++|..+
T Consensus 762 ----------------------SLl--RGGIAERG---GVRVGHRIIEINgQSVVA~pHekIV~lLs~a 803 (829)
T KOG3605|consen 762 ----------------------SLL--RGGIAERG---GVRVGHRIIEINGQSVVATPHEKIVQLLSNA 803 (829)
T ss_pred ----------------------hhh--cccchhcc---CceeeeeEEEECCceEEeccHHHHHHHHHHh
Confidence 222 36767665 8999999999999999999999999999765
No 2
>KOG3209|consensus
Probab=100.00 E-value=6.1e-43 Score=357.76 Aligned_cols=408 Identities=20% Similarity=0.268 Sum_probs=279.2
Q ss_pred eEEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEE
Q psy3479 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVV 144 (518)
Q Consensus 65 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v 144 (518)
.+.|.|...+ |||+|.+++.-....-+-|++|+++|||+++|+|.+||.|+.|||.++.|.||++|+++++..+-+..|
T Consensus 347 st~LvKg~~G-FGfTliGGdd~~gDefLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiPvg~~V 425 (984)
T KOG3209|consen 347 STKLVKGYMG-FGFTLIGGDDVRGDEFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIPVGQSV 425 (984)
T ss_pred EEEEeecccc-cceEEecCCcCCCCceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccccCCee
Confidence 3788888777 999999876433345566999999999999999999999999999999999999999999999877899
Q ss_pred EEEEEeCCce------------eEEEeeCC------------------------------------CCccccceEecCCC
Q psy3479 145 KLTVVPCAPV------------VEVKIKRP------------------------------------DTKYQLGFSVQNGV 176 (518)
Q Consensus 145 ~l~v~~~~~~------------~~~~~~rp------------------------------------~~~~~~g~~v~~~~ 176 (518)
.|+++|.-+. +.+.-.-| +...++||+++.
T Consensus 426 ~L~lcRgyelp~dp~dp~~sp~~~iv~~~P~~~~~~~gp~v~~~~sss~~~a~~~~~~el~ti~i~kgpegfgftiAD-- 503 (984)
T KOG3209|consen 426 DLVLCRGYELPFDPEDPVGSPRVAIVPSWPDSSTDKGGPMVTGRPSSSTHLAQHDGPPELTTIKIVKGPEGFGFTIAD-- 503 (984)
T ss_pred eEEEecCccCCCCCcccCCCCccccccCCCCCCCCCCCCeeecCCCCccccccCCCCcccEEEeeecCCCCCCceecc--
Confidence 9999987321 11111101 112222222221
Q ss_pred CCCCCCCCCCcccccccccceeEeeecccCCCCCCCCCCccceeeeceEEEEcccchhhhhHHHHHHHhhcccccccEEE
Q psy3479 177 APEGETQPSTEVDLFISTEKIMVLNTDLKAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVV 256 (518)
Q Consensus 177 ~~~~~~~P~~~~~~~~s~~~~gi~v~~i~~p~g~a~~~~~g~L~~gD~il~Vng~~~~~~~~~eav~~lk~~~~~~~lvv 256 (518)
.++|-.+.+|..|. .+ -.|..||.|+++|..++++.+|.+++++|+.+.- |.-+.
T Consensus 504 ------------------sPtgqrvK~ilDp~----~c--~gl~eGd~IVei~~rnvr~L~h~qvvdmlke~pi-G~r~~ 558 (984)
T KOG3209|consen 504 ------------------SPTGQRVKQILDPQ----DC--PGLSEGDLIVEINERNVRALTHTQVVDMLKECPI-GSRVH 558 (984)
T ss_pred ------------------CCCCCceeeecCcc----cC--CCCCCCCeEEecccccccccchHHHHHHHHhccC-Cccee
Confidence 11222333333221 12 3678899999999999999999999999999743 33333
Q ss_pred EEeecccCCCCCCCCCCCCCCCccccccccCchhhhHhhhccchhhhhhHHHH--hhCCCCC----CCCccccchhhhcc
Q psy3479 257 LMARRRFVSQEADEPPKISRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFL--KANGIED----HSFVKEMDYQEVLN 330 (518)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~ 330 (518)
+...|- .+++..++++.. +..++.+....+++.+...+.+.|+ .++..++ ..+.+++.|+.|..
T Consensus 559 Llv~RG-------gp~s~~ktpk~~---~r~~~~~s~~~s~sap~i~q~~Pfpp~~rs~~pd~t~~~~qrkpdp~~~we~ 628 (984)
T KOG3209|consen 559 LLVKRG-------GPPSPSKTPKAA---DRKENQGSNQMSSSAPLIPQKLPFPPTSRSEEPDNTRNTLQRKPDPTEEWEK 628 (984)
T ss_pred EEEecC-------CCCCCCcCcchh---hhccCCCCccccccccccCCCCCCCCcccccCCcccccccccCCChHHHhhh
Confidence 333322 122223333311 1111111001111222111122222 1111121 22346778888888
Q ss_pred ccccccccccccc----ccCccEEEEEeCCCCCceeEEEEeCCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCe
Q psy3479 331 SQEIFGDELQMFA----KKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 406 (518)
Q Consensus 331 ~~~~~~~~~~~~~----~~~~~~~V~L~k~~~~~lG~~i~~~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~ 406 (518)
+..+|.+....-+ .+....+|.|.|. ..+|||.|.||.. +...++|..|.+.++|+++|||+.||+|+.|+|.
T Consensus 629 Sraiyesr~~Ps~tsn~~pdk~ldV~L~rk-esGFGFRiLGG~e--p~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~ 705 (984)
T KOG3209|consen 629 SRAIYESRMRPSSTSNQKPDKELDVFLRRK-ESGFGFRILGGDE--PGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGI 705 (984)
T ss_pred cccchhccCCCCCccccCCccceeEEEEee-ccccceEEecCCC--CCCeeEEeeeeecccccccCcccCCCeEEEecCe
Confidence 8887776632111 1223468999995 5689999997321 2236999999999999999999999999999999
Q ss_pred eccCCChHHHHHHHHHhcC--cCCeeEEEeee-e--c-----------ccceeccCCCCccccEEEEecCCCCCCCcEEE
Q psy3479 407 SLVGLPLSTCQTYIKILMK--TMPTSMFRLLT-G--Q-----------ETPVVVPKAKGEILGVVIVESGWGSMLPTVVI 470 (518)
Q Consensus 407 ~v~~~s~~~~~~~l~~~~~--~v~~~v~r~~~-~--~-----------~~~~~~~~~~~~~lG~~i~~~g~~~~~~~i~I 470 (518)
+|.+.+|.+++.++..+.. .|.+.|.|-.. . . ...+++.++.+++|||.|... ...+..+ |
T Consensus 706 pV~GksH~~vv~Lm~~AArnghV~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR~ENeGFGFVi~sS-~~kp~sg--i 782 (984)
T KOG3209|consen 706 PVEGKSHSEVVDLMEAAARNGHVNLTVRRKVRTGPARRSPRNSAAPSGPYDVVLHRKENEGFGFVIMSS-QNKPESG--I 782 (984)
T ss_pred eccCccHHHHHHHHHHHHhcCceEEEEeeeeeeccccCCcccccCCCCCeeeEEecccCCceeEEEEec-ccCCCCC--c
Confidence 9999999999999987654 35555554221 0 0 012667788889999999843 3344444 9
Q ss_pred EEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhcCC
Q psy3479 471 ANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 516 (518)
Q Consensus 471 ~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~~~ 516 (518)
.+|++||||+++|+|++||+|++|||+++-+++|.+.|++||.+|.
T Consensus 783 GrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGl 828 (984)
T KOG3209|consen 783 GRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGL 828 (984)
T ss_pred cccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999885
No 3
>KOG3605|consensus
Probab=100.00 E-value=3.5e-41 Score=342.51 Aligned_cols=316 Identities=61% Similarity=0.900 Sum_probs=280.5
Q ss_pred CCCCCcccccccccceeEeeeccc-----------CCCCCCCCCCccceeeeceEEEEcccchhhhhHHHHHHHhhcccc
Q psy3479 182 TQPSTEVDLFISTEKIMVLNTDLK-----------APEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIAD 250 (518)
Q Consensus 182 ~~P~~~~~~~~s~~~~gi~v~~i~-----------~p~g~a~~~~~g~L~~gD~il~Vng~~~~~~~~~eav~~lk~~~~ 250 (518)
+.|.+..+|.|+++ .+++++ +|+|..++..+.+|++..+.+.|.+.+++...++++++.+.++.+
T Consensus 466 ~~psk~~rm~Qaqe----avsrvk~~~~~~~s~~~Apegesqp~tevdlfist~ri~VLnadlqe~mmdhaLrtisyiad 541 (829)
T KOG3605|consen 466 RNPSKAVRMMQAQE----AVSRVKGGQKNAKSGKKAPEGESQPMTEVDLFISTQRIKVLNADLQETMMDHALRTISYIAD 541 (829)
T ss_pred CCCcHHHHHHHHHH----HHhhhccccccccccccCCCCCCCcceeeeeeeecceeEEEechhHHhhhhhhhhhhHHHhh
Confidence 45888888988774 555555 899999999999999999999999999999999999999999999
Q ss_pred cccEEEEEeecccCCCCC-------CCCCCCCCCCccccccccCchhhhHhhhccchhhhhhHHHHhhCCCCCCCCcccc
Q psy3479 251 IGDLVVLMARRRFVSQEA-------DEPPKISRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEM 323 (518)
Q Consensus 251 ~~~lvv~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (518)
.++++++++||+...+.. ......+++|+|.||+|+++++|+|++++||+|+++|++|++.|++.+.+.++..
T Consensus 542 Ig~lvvlMarrr~~~~s~~~~~~~~~~~~~~~rtpKMICHVFESdeAQfIAQSIGQAFqVAY~EFLrANGI~~e~l~~q~ 621 (829)
T KOG3605|consen 542 IGNVVVLMARRRDVRSSSEDCSEDIDPAQKGNRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLRANGIEPEDLVSQM 621 (829)
T ss_pred hhHHHHHHHHhhcccccccccCCCCCcccccCCCcceEEEEeccchHHHHHHHHHHHHHHHHHHHHHHcCCCchHhhhhc
Confidence 999999999988765421 1233457899999999999999999999999999999999999999999999999
Q ss_pred chhhhcccccccccccccccccCccEEEEEeCCCCCceeEEEEeCCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEE
Q psy3479 324 DYQEVLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 403 (518)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~L~k~~~~~lG~~i~~~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~V 403 (518)
+|++++++|+++.+++.+|+++++|++|.|.|..++.||+.|+.++||+..|-++|.+...++||+++|+|..||+|++|
T Consensus 622 dYqevlNsQei~gDeLe~FakkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaI 701 (829)
T KOG3605|consen 622 DYQEVLNSQEIFGDELEHFAKKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSI 701 (829)
T ss_pred chhhccchhhhhccHHHHhhhhcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeeccCCChHHHHHHHHHhcCcCCeeEEEeeeeccccee--ccCCCC--ccccEEEEecCCCCCCCcEEEEEECCCChh
Q psy3479 404 NGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETPVV--VPKAKG--EILGVVIVESGWGSMLPTVVIANLAPAGAA 479 (518)
Q Consensus 404 ng~~v~~~s~~~~~~~l~~~~~~v~~~v~r~~~~~~~~~~--~~~~~~--~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A 479 (518)
||.++.+++...+...++..... +.+++.+-...|++ ..+++. ..|||++..+ +|.++..||.|
T Consensus 702 NG~SLVGLPLstcQs~Ik~~KnQ---T~VkltiV~cpPV~~V~I~RPd~kyQLGFSVQNG---------iICSLlRGGIA 769 (829)
T KOG3605|consen 702 NGTSLVGLPLSTCQSIIKGLKNQ---TAVKLNIVSCPPVTTVLIRRPDLRYQLGFSVQNG---------IICSLLRGGIA 769 (829)
T ss_pred cCceeccccHHHHHHHHhccccc---ceEEEEEecCCCceEEEeecccchhhccceeeCc---------Eeehhhcccch
Confidence 99999999999999999987764 33444443444432 233333 5799999732 78999999999
Q ss_pred hhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhc
Q psy3479 480 ARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 514 (518)
Q Consensus 480 ~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~ 514 (518)
+|.| +|+|-||++|||++|--..|+.+|++|..+
T Consensus 770 ERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~a 803 (829)
T KOG3605|consen 770 ERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNA 803 (829)
T ss_pred hccC-ceeeeeEEEECCceEEeccHHHHHHHHHHh
Confidence 9999 999999999999999999999999999764
No 4
>KOG3209|consensus
Probab=100.00 E-value=1.3e-37 Score=318.85 Aligned_cols=348 Identities=22% Similarity=0.311 Sum_probs=259.3
Q ss_pred eEEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEE
Q psy3479 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVV 144 (518)
Q Consensus 65 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v 144 (518)
.+.|.|.+-+ |||+++.+-.| --|+.|.. |-..-| |+.||.|++||+..+..++|.+++++||+++-+.++
T Consensus 487 ti~i~kgpeg-fgftiADsPtg-----qrvK~ilD--p~~c~g-l~eGd~IVei~~rnvr~L~h~qvvdmlke~piG~r~ 557 (984)
T KOG3209|consen 487 TIKIVKGPEG-FGFTIADSPTG-----QRVKQILD--PQDCPG-LSEGDLIVEINERNVRALTHTQVVDMLKECPIGSRV 557 (984)
T ss_pred EEeeecCCCC-CCceeccCCCC-----CceeeecC--cccCCC-CCCCCeEEecccccccccchHHHHHHHHhccCCcce
Confidence 4667777655 99999976543 34666654 333335 999999999999999999999999999999999999
Q ss_pred EEEEEeCCcee---------------------------------------------------------------------
Q psy3479 145 KLTVVPCAPVV--------------------------------------------------------------------- 155 (518)
Q Consensus 145 ~l~v~~~~~~~--------------------------------------------------------------------- 155 (518)
.|.|.|..|.+
T Consensus 558 ~Llv~RGgp~s~~ktpk~~~r~~~~~s~~~s~sap~i~q~~Pfpp~~rs~~pd~t~~~~qrkpdp~~~we~Sraiyesr~ 637 (984)
T KOG3209|consen 558 HLLVKRGGPPSPSKTPKAADRKENQGSNQMSSSAPLIPQKLPFPPTSRSEEPDNTRNTLQRKPDPTEEWEKSRAIYESRM 637 (984)
T ss_pred eEEEecCCCCCCCcCcchhhhccCCCCccccccccccCCCCCCCCcccccCCcccccccccCCChHHHhhhcccchhccC
Confidence 99998863211
Q ss_pred --------------EEEeeCCCCccccceEecCCCCCCCCCCCCCcccccccccceeEeeecccCCCCCCCCCCccceee
Q psy3479 156 --------------EVKIKRPDTKYQLGFSVQNGVAPEGETQPSTEVDLFISTEKIMVLNTDLKAPEGETQPSTEVDLFI 221 (518)
Q Consensus 156 --------------~~~~~rp~~~~~~g~~v~~~~~~~~~~~P~~~~~~~~s~~~~gi~v~~i~~p~g~a~~~~~g~L~~ 221 (518)
.|.+.| ...++||.+.+|.. |+ ..|||-.|. |.|+|..+ |+|+.
T Consensus 638 ~Ps~tsn~~pdk~ldV~L~r--kesGFGFRiLGG~e------p~-----------qpi~iG~Iv-~lGaAe~D--GRL~~ 695 (984)
T KOG3209|consen 638 RPSSTSNQKPDKELDVFLRR--KESGFGFRILGGDE------PG-----------QPIYIGAIV-PLGAAEED--GRLRE 695 (984)
T ss_pred CCCCccccCCccceeEEEEe--eccccceEEecCCC------CC-----------CeeEEeeee-eccccccc--CcccC
Confidence 011110 01123333333322 21 458999998 99999999 89999
Q ss_pred eceEEEEcccchhhhhHHHHHHHhhcccccccEEEEEeecccCCCCCCCCCCCCCCCccccccccCchhhhHhhhccchh
Q psy3479 222 STEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEAQFIAQSIGQAF 301 (518)
Q Consensus 222 gD~il~Vng~~~~~~~~~eav~~lk~~~~~~~lvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 301 (518)
||.++.|+|+++.+.+|.+++.++..++..+.+-+.+.| +..... .+++++..
T Consensus 696 gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRR-kv~~~~------~~rsp~~s-------------------- 748 (984)
T KOG3209|consen 696 GDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRR-KVRTGP------ARRSPRNS-------------------- 748 (984)
T ss_pred CCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEee-eeeecc------ccCCcccc--------------------
Confidence 999999999999999999999999888766655544433 211110 00011000
Q ss_pred hhhhHHHHhhCCCCCCCCccccchhhhcccccccccccccccccCccEEEEEeCCCCCceeEEEEeCCCCCcCCcEEEEE
Q psy3479 302 QVAYMEFLKANGIEDHSFVKEMDYQEVLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIAN 381 (518)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~L~k~~~~~lG~~i~~~~~g~~~~g~~I~~ 381 (518)
+. +...-+|.|+|+.+++|||.|..+-. .+.+| |..
T Consensus 749 -----------------------~~------------------~~~~yDV~lhR~ENeGFGFVi~sS~~-kp~sg--iGr 784 (984)
T KOG3209|consen 749 -----------------------AA------------------PSGPYDVVLHRKENEGFGFVIMSSQN-KPESG--IGR 784 (984)
T ss_pred -----------------------cC------------------CCCCeeeEEecccCCceeEEEEeccc-CCCCC--ccc
Confidence 00 01123799999999999999986332 23333 999
Q ss_pred ecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCcCCeeEEEeee--------e----------------
Q psy3479 382 LAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLT--------G---------------- 437 (518)
Q Consensus 382 V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~v~~~v~r~~~--------~---------------- 437 (518)
|.+||||+|+|+|++||+|++|||.++.+++|.+.+.+++.++-.|.+.++--.. .
T Consensus 785 IieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~ 864 (984)
T KOG3209|consen 785 IIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQ 864 (984)
T ss_pred cccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcChhccCCCCCCcchhhcCcccccCCHhHc
Confidence 9999999999999999999999999999999999999999999988777642110 0
Q ss_pred -----------ccc--c-------------------eeccCCCCccccEEEEecCCCCCCCcEEEEEECCCChhhhcCCC
Q psy3479 438 -----------QET--P-------------------VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQL 485 (518)
Q Consensus 438 -----------~~~--~-------------------~~~~~~~~~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L 485 (518)
.+. | .+.+.+...+|||+|. +|. ....++||-++..+|||.++||+
T Consensus 865 ~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG~kGFGFSiR-GGr-eynM~LfVLRlAeDGPA~rdGrm 942 (984)
T KOG3209|consen 865 YGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERGAKGFGFSIR-GGR-EYNMDLFVLRLAEDGPAIRDGRM 942 (984)
T ss_pred cCCCCCCccccccCCCCccccceeccccccccCCeeEEEeeccccccceEee-ccc-ccccceEEEEeccCCCccccCce
Confidence 000 0 1222344578999998 553 45568999999999999999999
Q ss_pred CCCCEEEEECCEeCCCCCHHHHHHHhhhcCC
Q psy3479 486 NIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 516 (518)
Q Consensus 486 ~~GD~Il~VNg~~v~~~s~~e~v~~lk~~~~ 516 (518)
++||+|++|||++..+++|..|+++||+.|.
T Consensus 943 ~VGDqi~eINGesTkgmtH~rAIelIk~gg~ 973 (984)
T KOG3209|consen 943 RVGDQITEINGESTKGMTHDRAIELIKQGGR 973 (984)
T ss_pred eecceEEEecCcccCCCcHHHHHHHHHhCCe
Confidence 9999999999999999999999999999875
No 5
>KOG3580|consensus
Probab=99.94 E-value=1.8e-25 Score=225.88 Aligned_cols=91 Identities=24% Similarity=0.342 Sum_probs=77.6
Q ss_pred ccccceeEEEEccCCcceeEEEEecCC----cCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy3479 59 HVFESDEVVVPKAKGEILGVVIVESGW----GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY 134 (518)
Q Consensus 59 ~vf~s~~v~l~k~~~~~lG~~l~~~~~----~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~ 134 (518)
.+||...|+|.|+++.+|||.|.++-. .++...++|++|.|||||+ |+|+.||+|+.|||+++.+..|+-|+++
T Consensus 5 ~IWEQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQq 82 (1027)
T KOG3580|consen 5 LIWEQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQ 82 (1027)
T ss_pred hhhhhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHH
Confidence 467777899999999999999996331 2345579999999999995 9999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEEeCCc
Q psy3479 135 IKNSKNQTVVKLTVVPCAP 153 (518)
Q Consensus 135 l~~~~~~~~v~l~v~~~~~ 153 (518)
||.|+. ...++|.|...
T Consensus 83 LrksgK--~A~ItvkRprk 99 (1027)
T KOG3580|consen 83 LRKSGK--VAAITVKRPRK 99 (1027)
T ss_pred HHhhcc--ceeEEecccce
Confidence 999995 67777766543
No 6
>KOG3580|consensus
Probab=99.62 E-value=1.5e-14 Score=147.37 Aligned_cols=85 Identities=25% Similarity=0.417 Sum_probs=73.1
Q ss_pred eEEEEcc-CCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcE
Q psy3479 65 EVVVPKA-KGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTV 143 (518)
Q Consensus 65 ~v~l~k~-~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~ 143 (518)
.|.|.|. .++-||+.|. .-|||++|...|.|+|+|.|+.||.||.|||+...+|++.+|..+|-... +.
T Consensus 201 kv~LvKsR~nEEyGlrLg--------SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~--GK 270 (1027)
T KOG3580|consen 201 KVLLVKSRANEEYGLRLG--------SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSR--GK 270 (1027)
T ss_pred eEEEEeeccchhhccccc--------chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhcc--Cc
Confidence 4777664 4566999883 24799999999999999999999999999999999999999999999988 59
Q ss_pred EEEEEEeCCceeEEEe
Q psy3479 144 VKLTVVPCAPVVEVKI 159 (518)
Q Consensus 144 v~l~v~~~~~~~~~~~ 159 (518)
+.|+|.|...-+.+.|
T Consensus 271 L~lvVlRD~~qtLiNi 286 (1027)
T KOG3580|consen 271 LQLVVLRDSQQTLINI 286 (1027)
T ss_pred eEEEEEecCCceeeec
Confidence 9999998876665554
No 7
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.61 E-value=4.5e-15 Score=119.01 Aligned_cols=81 Identities=28% Similarity=0.466 Sum_probs=72.9
Q ss_pred eEEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEE
Q psy3479 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVV 144 (518)
Q Consensus 65 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v 144 (518)
.|+|.|..+++|||++.+..... ..++||++|.|+|||+++| |++||+|++|||+++.+++|++++.+|+.+.+ .|
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~-~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~--~v 76 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDND-EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASN--PV 76 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSS-SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTS--EE
T ss_pred CEEEEeCCCCCcCEEEEecCCCC-cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCC--cE
Confidence 37889988888999999866522 3689999999999999999 99999999999999999999999999999996 89
Q ss_pred EEEEE
Q psy3479 145 KLTVV 149 (518)
Q Consensus 145 ~l~v~ 149 (518)
+|+|.
T Consensus 77 ~L~V~ 81 (81)
T PF00595_consen 77 TLTVQ 81 (81)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 98874
No 8
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=99.59 E-value=4.4e-16 Score=135.59 Aligned_cols=63 Identities=65% Similarity=0.888 Sum_probs=50.6
Q ss_pred ccccchhhhhhhhccccccceeeecCcEEEEEEeecCCCCCCCC---C----CCCCCCCcccccccccee
Q psy3479 3 TFNDRVHKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADE---P----PKISRTPKMICHVFESDE 65 (518)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~---~----~~~~~~~~~~~~vf~s~~ 65 (518)
.+-+.-|||+|||||||+||||||+||++++||||+........ . ....++++|+||||++++
T Consensus 62 ~v~~~~tk~im~~h~L~~ISy~AD~~d~~v~mAkr~~~~~~~~~~~~~~~~~~~~~~~~k~~ChVFes~~ 131 (156)
T cd01208 62 MVLNTDLQEIXMDHALRTISYIADIGDLVVLMARRRIPRSSSQENSEASHPSQDGKRTPKXICHVFESDE 131 (156)
T ss_pred EEEecCccceeccCcccceEEEecCCCeEEEEEeccccccccccccccCCcccccccccceeEEEEecCc
Confidence 34566799999999999999999999999999999986432211 1 234678899999999874
No 9
>PRK10139 serine endoprotease; Provisional
Probab=99.44 E-value=2.6e-12 Score=135.44 Aligned_cols=151 Identities=18% Similarity=0.269 Sum_probs=101.3
Q ss_pred CceeEEEEeC------CCCCc-CCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHH--hcCcCCe
Q psy3479 359 EILGVVIVES------GWGSM-LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKI--LMKTMPT 429 (518)
Q Consensus 359 ~~lG~~i~~~------~~g~~-~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~--~~~~v~~ 429 (518)
.+||+.+..- .++.. ..|++|..|.++|||+++| |++||+|++|||+.+. ++.+....+.. .+..+.+
T Consensus 267 ~~LGv~~~~l~~~~~~~lgl~~~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l 343 (455)
T PRK10139 267 GLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKL 343 (455)
T ss_pred cceeEEEEECCHHHHHhcCCCCCCceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEE
Confidence 5788887641 12222 2489999999999999999 9999999999999999 67787777765 3444445
Q ss_pred eEEEeeeecccceeccCCCC----------ccccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy3479 430 SMFRLLTGQETPVVVPKAKG----------EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 499 (518)
Q Consensus 430 ~v~r~~~~~~~~~~~~~~~~----------~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v 499 (518)
.+.|-.......+.+..... ...|+.+..........+++|.+|.++|||+++| |++||+|++|||+++
T Consensus 344 ~V~R~G~~~~l~v~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v 422 (455)
T PRK10139 344 GLLRNGKPLEVEVTLDTSTSSSASAEMITPALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRV 422 (455)
T ss_pred EEEECCEEEEEEEEECCCCCcccccccccccccccEecccccccCCCceEEEEeCCCChHHHcC-CCCCCEEEEECCEEc
Confidence 54442111111111111100 1123333311000111378999999999999999 999999999999999
Q ss_pred CCCCHHHHHHHhhhcC
Q psy3479 500 VGLPLSTCQTYIKVNH 515 (518)
Q Consensus 500 ~~~s~~e~v~~lk~~~ 515 (518)
.+ ++++.++|++..
T Consensus 423 ~~--~~~~~~~l~~~~ 436 (455)
T PRK10139 423 NS--IAEMRKVLAAKP 436 (455)
T ss_pred CC--HHHHHHHHHhCC
Confidence 55 589999987643
No 10
>KOG3550|consensus
Probab=99.42 E-value=3.8e-13 Score=114.63 Aligned_cols=85 Identities=32% Similarity=0.430 Sum_probs=75.2
Q ss_pred eEEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEE
Q psy3479 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVV 144 (518)
Q Consensus 65 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v 144 (518)
-|+|.|.+.+ |||.|.+++. ....++|+.|.|||.|+|.|.|+-||++++|||++++|-.|+.|+++||.+.. .|
T Consensus 93 vvelpktdeg-lgfnvmggke--qnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~g--sv 167 (207)
T KOG3550|consen 93 VVELPKTDEG-LGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVG--SV 167 (207)
T ss_pred eeecCccccc-cceeeccCcc--cCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcC--cE
Confidence 3888887655 9999997653 45569999999999999999999999999999999999999999999999994 89
Q ss_pred EEEEEeCCce
Q psy3479 145 KLTVVPCAPV 154 (518)
Q Consensus 145 ~l~v~~~~~~ 154 (518)
+|+|...|.+
T Consensus 168 klvvrytpkv 177 (207)
T KOG3550|consen 168 KLVVRYTPKV 177 (207)
T ss_pred EEEEecChHH
Confidence 9999877654
No 11
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.41 E-value=3.2e-12 Score=134.80 Aligned_cols=150 Identities=23% Similarity=0.349 Sum_probs=103.9
Q ss_pred CceeEEEEeC------CCCCc-CCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHH--hcCcCCe
Q psy3479 359 EILGVVIVES------GWGSM-LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKI--LMKTMPT 429 (518)
Q Consensus 359 ~~lG~~i~~~------~~g~~-~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~--~~~~v~~ 429 (518)
.+||+.+..- ..|.+ ..|++|..|.++|||+++| |+.||+|++|||..+. ++.+....+.. .+..+.+
T Consensus 234 ~~lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~--~~~~~~~~l~~~~~g~~v~l 310 (428)
T TIGR02037 234 GWLGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPIS--SFADLRRAIGTLKPGKKVTL 310 (428)
T ss_pred CcCceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEE
Confidence 5788887641 12222 2489999999999999999 9999999999999998 56666666654 3344555
Q ss_pred eEEEeeeecccceeccC-------CCCccccEEEEecCC------CCC--CCcEEEEEECCCChhhhcCCCCCCCEEEEE
Q psy3479 430 SMFRLLTGQETPVVVPK-------AKGEILGVVIVESGW------GSM--LPTVVIANLAPAGAAARCGQLNIGDQIIAV 494 (518)
Q Consensus 430 ~v~r~~~~~~~~~~~~~-------~~~~~lG~~i~~~g~------~~~--~~~i~I~~V~~gs~A~~aG~L~~GD~Il~V 494 (518)
.+.|-.......+.+.. .....+|+.+..... +.+ ..+++|.+|.++|+|+++| |++||+|++|
T Consensus 311 ~v~R~g~~~~~~v~l~~~~~~~~~~~~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aG-L~~GDvI~~I 389 (428)
T TIGR02037 311 GILRKGKEKTITVTLGASPEEQASSSNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAG-LQPGDVILSV 389 (428)
T ss_pred EEEECCEEEEEEEEECcCCCccccccccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcC-CCCCCEEEEE
Confidence 55442211111111111 112357877752110 111 1479999999999999999 9999999999
Q ss_pred CCEeCCCCCHHHHHHHhhhc
Q psy3479 495 NGVSLVGLPLSTCQTYIKVN 514 (518)
Q Consensus 495 Ng~~v~~~s~~e~v~~lk~~ 514 (518)
||+++.+ ++++.++|++.
T Consensus 390 ng~~V~s--~~d~~~~l~~~ 407 (428)
T TIGR02037 390 NQQPVSS--VAELRKVLDRA 407 (428)
T ss_pred CCEEcCC--HHHHHHHHHhc
Confidence 9999965 58888888763
No 12
>PRK10942 serine endoprotease; Provisional
Probab=99.41 E-value=4.8e-12 Score=134.14 Aligned_cols=151 Identities=19% Similarity=0.267 Sum_probs=102.1
Q ss_pred CceeEEEEe------CCCCCc-CCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHh--cCcCCe
Q psy3479 359 EILGVVIVE------SGWGSM-LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKIL--MKTMPT 429 (518)
Q Consensus 359 ~~lG~~i~~------~~~g~~-~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~--~~~v~~ 429 (518)
++||+.+.. ..++.. ..|++|..|.++|||+++| |+.||+|++|||+.+. ++.+....+... +..+.+
T Consensus 288 g~lGv~~~~l~~~~a~~~~l~~~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l 364 (473)
T PRK10942 288 GELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTL 364 (473)
T ss_pred ceeeeEeeecCHHHHHhcCCCCCCceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEE
Confidence 478888764 112222 2489999999999999999 9999999999999999 567777777643 334444
Q ss_pred eEEEeeeecccceeccC-------CCCccccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCC
Q psy3479 430 SMFRLLTGQETPVVVPK-------AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 502 (518)
Q Consensus 430 ~v~r~~~~~~~~~~~~~-------~~~~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~ 502 (518)
.+.|-.......+.+.. .....+|+............+++|.+|.++|+|+++| |++||+|++|||+++.+
T Consensus 365 ~v~R~G~~~~v~v~l~~~~~~~~~~~~~~lGl~g~~l~~~~~~~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s- 442 (473)
T PRK10942 365 GLLRDGKPVNVNVELQQSSQNQVDSSNIFNGIEGAELSNKGGDKGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN- 442 (473)
T ss_pred EEEECCeEEEEEEEeCcCcccccccccccccceeeecccccCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC-
Confidence 44442111111111111 1112355543311111122478999999999999999 99999999999999965
Q ss_pred CHHHHHHHhhhcC
Q psy3479 503 PLSTCQTYIKVNH 515 (518)
Q Consensus 503 s~~e~v~~lk~~~ 515 (518)
++++.++|++.+
T Consensus 443 -~~dl~~~l~~~~ 454 (473)
T PRK10942 443 -IAELRKILDSKP 454 (473)
T ss_pred -HHHHHHHHHhCC
Confidence 599999988754
No 13
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.33 E-value=6.9e-12 Score=132.71 Aligned_cols=127 Identities=22% Similarity=0.305 Sum_probs=88.1
Q ss_pred EEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHh--cCcCCeeEEEeeeecccceeccC--------
Q psy3479 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKIL--MKTMPTSMFRLLTGQETPVVVPK-------- 446 (518)
Q Consensus 377 ~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~--~~~v~~~v~r~~~~~~~~~~~~~-------- 446 (518)
.+|..|.++|||+++| |++||+|++|||+.+.+ +++....+... +.++++.+.|-.......+.+..
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~--~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~ 204 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPD--WDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPD 204 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCcc
Confidence 5789999999999999 99999999999999994 45555554432 23445555442211111111110
Q ss_pred --CCCccccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhc
Q psy3479 447 --AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 514 (518)
Q Consensus 447 --~~~~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~ 514 (518)
.....+|+... .+..+++|.+|.++|||+++| |++||+|++|||+++. +++++.+.++..
T Consensus 205 ~~~~~~~lGl~~~-----~~~~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~ 266 (449)
T PRK10779 205 KQDPVSSLGIRPR-----GPQIEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDN 266 (449)
T ss_pred ccchhhccccccc-----CCCcCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhC
Confidence 11124565321 122247899999999999999 9999999999999995 458888888763
No 14
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.29 E-value=1.5e-11 Score=98.50 Aligned_cols=79 Identities=23% Similarity=0.404 Sum_probs=67.8
Q ss_pred EEEEeCCCCCceeEEEEeCCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCcCCe
Q psy3479 350 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPT 429 (518)
Q Consensus 350 ~V~L~k~~~~~lG~~i~~~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~v~~ 429 (518)
.|+|.|....+|||++.++.... ..++||..|.++|+|+++| |+.||+|++|||.++.++++.+++.+++.+...+.+
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~-~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L 78 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDND-EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTL 78 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSS-SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCC-cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEE
Confidence 37788877899999999733221 3589999999999999999 999999999999999999999999999998875544
Q ss_pred e
Q psy3479 430 S 430 (518)
Q Consensus 430 ~ 430 (518)
.
T Consensus 79 ~ 79 (81)
T PF00595_consen 79 T 79 (81)
T ss_dssp E
T ss_pred E
Confidence 4
No 15
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.27 E-value=4e-11 Score=125.65 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=90.3
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCcCCeeEEEeeeecccceeccCCCCccccE
Q psy3479 375 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETPVVVPKAKGEILGV 454 (518)
Q Consensus 375 ~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~v~~~v~r~~~~~~~~~~~~~~~~~~lG~ 454 (518)
.+++|..|.++|||+++| +++||.|++|||+.+. ++.+....+....+.+...+.|-.. . ..+. -.+++
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~--~~~dl~~~ia~~~~~v~~~I~r~g~---~-~~l~----v~l~~ 196 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIP--GFKDVRQQIADIAGEPMVEILAERE---N-WTFE----VMKEL 196 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhcccceEEEEEecC---c-eEec----ccccc
Confidence 467899999999999999 9999999999999998 5667776666555555555544211 1 1110 11232
Q ss_pred EEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhc
Q psy3479 455 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 514 (518)
Q Consensus 455 ~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~ 514 (518)
... .+..+++|.+|.++|||+++| |++||+|++|||+++.+ ++|+.+.++..
T Consensus 197 ~~~-----~~~~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s--~~dl~~~l~~~ 248 (420)
T TIGR00054 197 IPR-----GPKIEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRS--WTDFVSAVKEN 248 (420)
T ss_pred eec-----CCCcCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhC
Confidence 221 122367999999999999999 99999999999999965 68998888763
No 16
>KOG3550|consensus
Probab=99.14 E-value=1.1e-10 Score=99.63 Aligned_cols=80 Identities=30% Similarity=0.476 Sum_probs=71.3
Q ss_pred cEEEEEeCCCCCceeEEEEeCCCCCcC-CcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCc
Q psy3479 348 QKEVVVPKAKGEILGVVIVESGWGSML-PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKT 426 (518)
Q Consensus 348 ~~~V~L~k~~~~~lG~~i~~~~~g~~~-~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~ 426 (518)
++.|+|.| ..++|||.+-| |.+. ..+||+.|.||+.|++.|.|+.||++++|||+++++-.|+.++.+|+.+.+.
T Consensus 91 prvvelpk-tdeglgfnvmg---gkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gs 166 (207)
T KOG3550|consen 91 PRVVELPK-TDEGLGFNVMG---GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGS 166 (207)
T ss_pred CceeecCc-cccccceeecc---CcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCc
Confidence 57899999 47889999997 4433 3799999999999999999999999999999999999999999999999998
Q ss_pred CCeeE
Q psy3479 427 MPTSM 431 (518)
Q Consensus 427 v~~~v 431 (518)
+.+.+
T Consensus 167 vklvv 171 (207)
T KOG3550|consen 167 VKLVV 171 (207)
T ss_pred EEEEE
Confidence 76654
No 17
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.13 E-value=6.4e-10 Score=88.96 Aligned_cols=79 Identities=35% Similarity=0.506 Sum_probs=67.9
Q ss_pred eEEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEE
Q psy3479 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVV 144 (518)
Q Consensus 65 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v 144 (518)
++.+.+....+|||.+.+.... ..+++|..|.+++||++.| |++||+|++|||..+..++++++..+|+.... .+
T Consensus 3 ~~~l~~~~~~~~G~~~~~~~~~--~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~--~v 77 (82)
T cd00992 3 TVTLRKDPGGGLGFSLRGGKDS--GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGD--EV 77 (82)
T ss_pred EEEEEeCCCCCcCEEEeCcccC--CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCC--eE
Confidence 5788888677799999864421 4589999999999999977 99999999999999999999999999999774 67
Q ss_pred EEEE
Q psy3479 145 KLTV 148 (518)
Q Consensus 145 ~l~v 148 (518)
+|++
T Consensus 78 ~l~v 81 (82)
T cd00992 78 TLTV 81 (82)
T ss_pred EEEE
Confidence 7765
No 18
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.09 E-value=7.9e-10 Score=85.66 Aligned_cols=68 Identities=35% Similarity=0.465 Sum_probs=60.5
Q ss_pred ceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEE
Q psy3479 75 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148 (518)
Q Consensus 75 ~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v 148 (518)
.|||.+..... .+++|.+|.+++||+++| |++||+|++|||.++.+++++++.++|+... +..|+|+|
T Consensus 2 ~~G~~~~~~~~----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEV-GEKVTLTV 69 (70)
T ss_pred CccEEEecCCC----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCC-CCeEEEEE
Confidence 48999985442 479999999999999988 9999999999999999999999999999987 46888876
No 19
>KOG3549|consensus
Probab=99.07 E-value=2.5e-10 Score=110.18 Aligned_cols=83 Identities=30% Similarity=0.360 Sum_probs=74.7
Q ss_pred eEEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEE
Q psy3479 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVV 144 (518)
Q Consensus 65 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v 144 (518)
.|+|.|++-++||++|.++.. . .-.++|+.|.+.-+|+..|.|-+||-|+.|||+.++.++|+|++++||++++ .|
T Consensus 57 tVtirRQ~vGGlGLSIKGGaE-H-n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGd--eV 132 (505)
T KOG3549|consen 57 TVTIRRQKVGGLGLSIKGGAE-H-NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGD--EV 132 (505)
T ss_pred eEEEEeeecCcceeeeccccc-c-CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCC--EE
Confidence 499999999999999996543 2 3348999999999999999999999999999999999999999999999997 99
Q ss_pred EEEEEeC
Q psy3479 145 KLTVVPC 151 (518)
Q Consensus 145 ~l~v~~~ 151 (518)
+|+|...
T Consensus 133 tlTV~~l 139 (505)
T KOG3549|consen 133 TLTVKHL 139 (505)
T ss_pred EEEeHhh
Confidence 9999643
No 20
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.06 E-value=2.1e-09 Score=86.31 Aligned_cols=81 Identities=32% Similarity=0.411 Sum_probs=69.6
Q ss_pred eEEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEE
Q psy3479 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVV 144 (518)
Q Consensus 65 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v 144 (518)
.+++.|.. ..|||.+....+. ..+++|..|.+++||+++| |++||+|++|||+.+.++++.+...+++..+. .+
T Consensus 4 ~~~~~~~~-~~~G~~~~~~~~~--~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~--~~ 77 (85)
T smart00228 4 LVELEKGG-GGLGFSLVGGKDE--GGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGG--KV 77 (85)
T ss_pred EEEEEECC-CcccEEEECCCCC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC--eE
Confidence 47778877 6699999854431 2689999999999999999 99999999999999999999999999999863 78
Q ss_pred EEEEEeC
Q psy3479 145 KLTVVPC 151 (518)
Q Consensus 145 ~l~v~~~ 151 (518)
+|++.|.
T Consensus 78 ~l~i~r~ 84 (85)
T smart00228 78 TLTVLRG 84 (85)
T ss_pred EEEEEeC
Confidence 8888764
No 21
>KOG3571|consensus
Probab=99.04 E-value=4.6e-10 Score=113.39 Aligned_cols=104 Identities=21% Similarity=0.299 Sum_probs=83.6
Q ss_pred CCCCCCCCCCccccccccceeEEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcC
Q psy3479 45 DEPPKISRTPKMICHVFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 124 (518)
Q Consensus 45 ~~~~~~~~~~~~~~~vf~s~~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~ 124 (518)
.++.+......|...+.+ |.|.-..--.|||+|++.....+..||||.+|.+||+.+.+||+.+||+||.||.++++
T Consensus 235 ~SSfSSiTdSsmslnIIT---V~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFE 311 (626)
T KOG3571|consen 235 ASSFSSITDSSMSLNIIT---VTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFE 311 (626)
T ss_pred ccccccccccccceeEEE---EEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchh
Confidence 333445556667776664 77766555559999998443345779999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhcCCCCc-EEEEEEEeC
Q psy3479 125 GLPLSTCQTYIKNSKNQT-VVKLTVVPC 151 (518)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~-~v~l~v~~~ 151 (518)
+++.++||.+||.+-... .++|+|.-|
T Consensus 312 NmSNd~AVrvLREaV~~~gPi~ltvAk~ 339 (626)
T KOG3571|consen 312 NMSNDQAVRVLREAVSRPGPIKLTVAKC 339 (626)
T ss_pred hcCchHHHHHHHHHhccCCCeEEEEeec
Confidence 999999999999765433 499999877
No 22
>PRK10942 serine endoprotease; Provisional
Probab=99.04 E-value=1.4e-08 Score=107.93 Aligned_cols=62 Identities=16% Similarity=0.321 Sum_probs=51.4
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCce
Q psy3479 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPV 154 (518)
Q Consensus 90 ~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~ 154 (518)
.|++|..|.+++||+++| |+.||.|++|||..+..+ ++....|.....+..+.|+|.|....
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~G~~ 372 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKP 372 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCeE
Confidence 489999999999999999 999999999999999864 66777777665556788888765533
No 23
>KOG3553|consensus
Probab=99.01 E-value=1.2e-10 Score=92.47 Aligned_cols=90 Identities=22% Similarity=0.313 Sum_probs=70.7
Q ss_pred ccccccccceeEEEEccC-----C---cceeEEEEecC--------CcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEE
Q psy3479 55 KMICHVFESDEVVVPKAK-----G---EILGVVIVESG--------WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 118 (518)
Q Consensus 55 ~~~~~vf~s~~v~l~k~~-----~---~~lG~~l~~~~--------~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~V 118 (518)
.|.|.+.. |+|.|.+ | -.+||.|-++- .+....|++|++|.+||||+++| |+++|.||.|
T Consensus 11 aveclsi~---velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQv 86 (124)
T KOG3553|consen 11 AVECLSIR---VELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQV 86 (124)
T ss_pred ceEEEEEE---EEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEe
Confidence 45565443 7776654 2 26899997532 22235599999999999999999 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeC
Q psy3479 119 NGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPC 151 (518)
Q Consensus 119 Ng~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~ 151 (518)
||-+..=++|++|+..|++.+ .+.|.|.|.
T Consensus 87 NG~DfTMvTHd~Avk~i~k~~---vl~mLVaR~ 116 (124)
T KOG3553|consen 87 NGWDFTMVTHDQAVKRITKEE---VLRMLVARQ 116 (124)
T ss_pred cCceeEEEEhHHHHHHhhHhH---HHHHHHHhh
Confidence 999999999999999999966 677766554
No 24
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.99 E-value=6.8e-09 Score=83.21 Aligned_cols=79 Identities=28% Similarity=0.370 Sum_probs=64.3
Q ss_pred ceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCce
Q psy3479 75 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPV 154 (518)
Q Consensus 75 ~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~ 154 (518)
.||+.+..... ..+++|.++.++|||+++| |++||.|++|||..+ -+..+...+|.....+..|+|+|.|....
T Consensus 2 ~lGv~~~~~~~---~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v--~~~~~~~~~l~~~~~g~~v~l~v~R~g~~ 75 (82)
T PF13180_consen 2 GLGVTVQNLSD---TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPV--NSSEDLVNILSKGKPGDTVTLTVLRDGEE 75 (82)
T ss_dssp E-SEEEEECSC---SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEES--SSHHHHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred EECeEEEEccC---CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEc--CCHHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 48999985442 4589999999999999999 999999999999999 55688888887777778999999998766
Q ss_pred eEEEe
Q psy3479 155 VEVKI 159 (518)
Q Consensus 155 ~~~~~ 159 (518)
.++.+
T Consensus 76 ~~~~v 80 (82)
T PF13180_consen 76 LTVEV 80 (82)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 25
>KOG3551|consensus
Probab=98.98 E-value=6.4e-10 Score=108.95 Aligned_cols=85 Identities=26% Similarity=0.257 Sum_probs=75.6
Q ss_pred eeEEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcE
Q psy3479 64 DEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTV 143 (518)
Q Consensus 64 ~~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~ 143 (518)
+.|.+.|.+.++|||+|.++.. . ...|+|+.|.+|=+|+..+.|..||.||+|||.+|...+|+|||+.||.++. .
T Consensus 86 R~V~V~K~d~gGLGISIKGGre-N-kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGk--e 161 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRE-N-KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGK--E 161 (506)
T ss_pred ceeEEEEecCCcceEEeecCcc-c-CCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCc--e
Confidence 4699999999999999996543 3 4459999999999999999999999999999999999999999999999995 8
Q ss_pred EEEEEEeCC
Q psy3479 144 VKLTVVPCA 152 (518)
Q Consensus 144 v~l~v~~~~ 152 (518)
|.|.|....
T Consensus 162 V~levKy~R 170 (506)
T KOG3551|consen 162 VLLEVKYMR 170 (506)
T ss_pred eeeeeeeeh
Confidence 888886553
No 26
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.97 E-value=5.9e-09 Score=110.07 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=97.4
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCceeEEEee--C-CCC--
Q psy3479 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIK--R-PDT-- 164 (518)
Q Consensus 90 ~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~~~~~~--r-p~~-- 164 (518)
.|++|.+|.++|||+++| |++||+|++|||..+.. ..+...+|.....+..|+|+|.|.....++.+. + |..
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~--~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~ 333 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISS--FADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQA 333 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCCCccc
Confidence 589999999999999999 99999999999999985 456667776655556899999998655444332 1 211
Q ss_pred ---ccccceEecCCCCCCCCCCCCCcccccccccceeEeeecccCCCCCCCCCCccceeeeceEEEEcccchhhhhHHHH
Q psy3479 165 ---KYQLGFSVQNGVAPEGETQPSTEVDLFISTEKIMVLNTDLKAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHA 241 (518)
Q Consensus 165 ---~~~~g~~v~~~~~~~~~~~P~~~~~~~~s~~~~gi~v~~i~~p~g~a~~~~~g~L~~gD~il~Vng~~~~~~~~~ea 241 (518)
..-+|+.++.-..... ..+.......|++|+.+. ++++|+.. +|+.||.|++|||..+.+. ++.
T Consensus 334 ~~~~~~lGi~~~~l~~~~~-------~~~~l~~~~~Gv~V~~V~-~~SpA~~a---GL~~GDvI~~Ing~~V~s~--~d~ 400 (428)
T TIGR02037 334 SSSNPFLGLTVANLSPEIR-------KELRLKGDVKGVVVTKVV-SGSPAARA---GLQPGDVILSVNQQPVSSV--AEL 400 (428)
T ss_pred cccccccceEEecCCHHHH-------HHcCCCcCcCceEEEEeC-CCCHHHHc---CCCCCCEEEEECCEEcCCH--HHH
Confidence 1123444432100000 000000112589999998 99998776 6999999999999998764 455
Q ss_pred HHHhhcc
Q psy3479 242 LRTISYI 248 (518)
Q Consensus 242 v~~lk~~ 248 (518)
.+.++..
T Consensus 401 ~~~l~~~ 407 (428)
T TIGR02037 401 RKVLDRA 407 (428)
T ss_pred HHHHHhc
Confidence 5555543
No 27
>KOG1892|consensus
Probab=98.94 E-value=2.6e-09 Score=114.56 Aligned_cols=82 Identities=30% Similarity=0.510 Sum_probs=72.3
Q ss_pred eEEEEccCCcceeEEEEe-cCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcE
Q psy3479 65 EVVVPKAKGEILGVVIVE-SGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTV 143 (518)
Q Consensus 65 ~v~l~k~~~~~lG~~l~~-~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~ 143 (518)
.|+|.|. |+ .|++|+. -|.|....||||+.|.+||+|+.+|||..||++|+|||++|.|++.+.|..++-..++ .
T Consensus 936 ~vtL~Kn-nG-mGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~--v 1011 (1629)
T KOG1892|consen 936 TVTLKKN-NG-MGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGN--V 1011 (1629)
T ss_pred EEEEecc-CC-ceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCC--e
Confidence 5888887 55 8888875 3445557799999999999999999999999999999999999999999999999996 9
Q ss_pred EEEEEEe
Q psy3479 144 VKLTVVP 150 (518)
Q Consensus 144 v~l~v~~ 150 (518)
|.|.|..
T Consensus 1012 V~leVaK 1018 (1629)
T KOG1892|consen 1012 VHLEVAK 1018 (1629)
T ss_pred EEEehhh
Confidence 9999853
No 28
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.89 E-value=2.5e-08 Score=80.31 Aligned_cols=79 Identities=27% Similarity=0.431 Sum_probs=65.6
Q ss_pred ceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeC-Cc
Q psy3479 75 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPC-AP 153 (518)
Q Consensus 75 ~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~-~~ 153 (518)
+||+.+.... .+++|..|.+++||+++| |++||+|++|||..+.+.++.++..+++... +..+.|++.|. ..
T Consensus 3 ~lG~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~-~~~i~l~v~r~~~~ 75 (85)
T cd00988 3 GIGLELKYDD-----GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKA-GTKVRLTLKRGDGE 75 (85)
T ss_pred EEEEEEEEcC-----CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCC-CCEEEEEEEcCCCC
Confidence 4999987533 368999999999999998 9999999999999999999999999998754 35899999887 55
Q ss_pred eeEEEee
Q psy3479 154 VVEVKIK 160 (518)
Q Consensus 154 ~~~~~~~ 160 (518)
..++.+.
T Consensus 76 ~~~~~~~ 82 (85)
T cd00988 76 PREVTLT 82 (85)
T ss_pred EEEEEEE
Confidence 5444443
No 29
>KOG3651|consensus
Probab=98.85 E-value=1.1e-08 Score=97.25 Aligned_cols=84 Identities=29% Similarity=0.422 Sum_probs=74.0
Q ss_pred cceeEEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCC
Q psy3479 62 ESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQ 141 (518)
Q Consensus 62 ~s~~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~ 141 (518)
.++.|+|.|+...-.||+|-+++ ..-|.++|..|..+.||+++|+++.||.|++|||+++.|.+--++.++|+.+.+
T Consensus 4 ~~~~v~ltKD~~nliGISIGGGa--pyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~- 80 (429)
T KOG3651|consen 4 QSETVELTKDEKNLIGISIGGGA--PYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLN- 80 (429)
T ss_pred ccCcEEEeeccccceeEEecCCC--CcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhcc-
Confidence 35679999998888999996443 356789999999999999999999999999999999999999999999999996
Q ss_pred cEEEEEEE
Q psy3479 142 TVVKLTVV 149 (518)
Q Consensus 142 ~~v~l~v~ 149 (518)
.|+++..
T Consensus 81 -eV~IhyN 87 (429)
T KOG3651|consen 81 -EVKIHYN 87 (429)
T ss_pred -ceEEEeh
Confidence 6766654
No 30
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.85 E-value=1.3e-08 Score=78.66 Aligned_cols=60 Identities=33% Similarity=0.465 Sum_probs=52.7
Q ss_pred cccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhcC
Q psy3479 451 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 515 (518)
Q Consensus 451 ~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~~ 515 (518)
.+||.+.... ..+++|.+|.++|||+++| |++||+|++|||.++.+++++++.++|+...
T Consensus 2 ~~G~~~~~~~----~~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~ 61 (70)
T cd00136 2 GLGFSIRGGT----EGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEV 61 (70)
T ss_pred CccEEEecCC----CCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCC
Confidence 5789987321 1478999999999999999 9999999999999999999999999999864
No 31
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.84 E-value=2.8e-08 Score=79.39 Aligned_cols=75 Identities=29% Similarity=0.419 Sum_probs=63.2
Q ss_pred EEEEEeCCCCCceeEEEEeCCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCc
Q psy3479 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKT 426 (518)
Q Consensus 349 ~~V~L~k~~~~~lG~~i~~~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~ 426 (518)
+++.+.+....+|||.+.+... ...+++|..|.++++|+++| |++||+|++|||.++..++++++...++.....
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~--~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~ 76 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKD--SGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDE 76 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCccc--CCCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCe
Confidence 4677888667899999986321 13479999999999999998 999999999999999999999999999876553
No 32
>KOG3553|consensus
Probab=98.80 E-value=1.1e-08 Score=81.27 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=54.1
Q ss_pred cccEEEEecCCCC---------CCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhcC
Q psy3479 451 ILGVVIVESGWGS---------MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 515 (518)
Q Consensus 451 ~lG~~i~~~g~~~---------~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~~ 515 (518)
.+||.|. +|.+. ...|+||.+|..||||+.|| |+.+|.|+.|||-.+.=++|.+|++.|+++.
T Consensus 36 ~~GFkIG-GGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~~ 107 (124)
T KOG3553|consen 36 ILGFKIG-GGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKEE 107 (124)
T ss_pred EEEEEec-cccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHhH
Confidence 4799986 55432 12389999999999999999 9999999999999999999999999998854
No 33
>PRK10139 serine endoprotease; Provisional
Probab=98.79 E-value=8.8e-08 Score=101.33 Aligned_cols=134 Identities=17% Similarity=0.243 Sum_probs=92.7
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCceeEEEeeC---CCC-c
Q psy3479 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKR---PDT-K 165 (518)
Q Consensus 90 ~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~~~~~~r---p~~-~ 165 (518)
.|++|..|.+++||+++| |++||.|++|||+.+..+ .+....|.....+..+.|+|.|.....++.+.. +.. .
T Consensus 290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~~~~~~~ 366 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSA 366 (455)
T ss_pred CceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCCccc
Confidence 489999999999999999 999999999999999854 777777776443458999999876554444431 100 0
Q ss_pred ccc-------ceEecCCCCCCCCCCCCCcccccccccceeEeeecccCCCCCCCCCCccceeeeceEEEEcccchhhhhH
Q psy3479 166 YQL-------GFSVQNGVAPEGETQPSTEVDLFISTEKIMVLNTDLKAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMM 238 (518)
Q Consensus 166 ~~~-------g~~v~~~~~~~~~~~P~~~~~~~~s~~~~gi~v~~i~~p~g~a~~~~~g~L~~gD~il~Vng~~~~~~~~ 238 (518)
... |+.+... ... ....|++|..+. ++++|+.. +|+.||.|++|||..+.+.
T Consensus 367 ~~~~~~~~~~g~~l~~~-------------~~~--~~~~Gv~V~~V~-~~spA~~a---GL~~GD~I~~Ing~~v~~~-- 425 (455)
T PRK10139 367 SAEMITPALQGATLSDG-------------QLK--DGTKGIKIDEVV-KGSPAAQA---GLQKDDVIIGVNRDRVNSI-- 425 (455)
T ss_pred ccccccccccccEeccc-------------ccc--cCCCceEEEEeC-CCChHHHc---CCCCCCEEEEECCEEcCCH--
Confidence 000 1111110 000 011478999998 99998776 7999999999999988764
Q ss_pred HHHHHHhhc
Q psy3479 239 DHALRTISY 247 (518)
Q Consensus 239 ~eav~~lk~ 247 (518)
++..+.++.
T Consensus 426 ~~~~~~l~~ 434 (455)
T PRK10139 426 AEMRKVLAA 434 (455)
T ss_pred HHHHHHHHh
Confidence 344444443
No 34
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=98.75 E-value=7.7e-09 Score=90.55 Aligned_cols=128 Identities=73% Similarity=1.023 Sum_probs=106.4
Q ss_pred CCCCcccccccccceeEeeecccCCCCCCCCCCccceeeeceEEEEcccchhhhhHHHHHHHhhcccccccEEEEEeecc
Q psy3479 183 QPSTEVDLFISTEKIMVLNTDLKAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRR 262 (518)
Q Consensus 183 ~P~~~~~~~~s~~~~gi~v~~i~~p~g~a~~~~~g~L~~gD~il~Vng~~~~~~~~~eav~~lk~~~~~~~lvv~~~~~~ 262 (518)
.|..+.+|.|++ ..|++|++|+|...+..+..|.+.-+-+.|.+.+.+...|+++++.+.++.|.+++++++++++
T Consensus 22 ~~~~~tR~~~a~----Eai~rik~~eG~~~~~t~V~L~IS~~gV~v~~~~tk~im~~h~L~~ISy~AD~~d~~v~mAkr~ 97 (156)
T cd01208 22 TPSKNVRMXQAQ----EAVSRIKAPEGESQPSTEVDLFISTEKIMVLNTDLQEIXMDHALRTISYIADIGDLVVLMARRR 97 (156)
T ss_pred CCChhhhHHHHH----HHHHHHhccccCCCCCcEEEEEEEeCeEEEEecCccceeccCcccceEEEecCCCeEEEEEecc
Confidence 366666777765 4889999899998888888999999999999999999999999999999999999999999876
Q ss_pred cCCCCCC-------CCCCCCCCCccccccccCchhhhHhhhccchhhhhhHHHHhhCCC
Q psy3479 263 FVSQEAD-------EPPKISRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGI 314 (518)
Q Consensus 263 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 314 (518)
....... ......+++++.||+|.++.++.++.++||+|.++|++|++.|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~k~~ChVFes~~Aq~Ia~TIGQAF~lAY~~fL~~nGi 156 (156)
T cd01208 98 IPRSSSQENSEASHPSQDGKRTPKXICHVFESDEAQFIAQSIGQAFQVAYQEFLRANGI 156 (156)
T ss_pred ccccccccccccCCcccccccccceeEEEEecCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5422110 011224567799999999999999999999999999999998874
No 35
>KOG3551|consensus
Probab=98.71 E-value=1.5e-08 Score=99.48 Aligned_cols=82 Identities=24% Similarity=0.250 Sum_probs=72.7
Q ss_pred cEEEEEeCCCCCceeEEEEeCCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCcC
Q psy3479 348 QKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTM 427 (518)
Q Consensus 348 ~~~V~L~k~~~~~lG~~i~~~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~v 427 (518)
.+.|.+.|...++||++|.||.. +.-.|+|++|.+|-+|++.+.|..||.|++|||.++.+.+|+++++.|+.++..|
T Consensus 85 ~R~V~V~K~d~gGLGISIKGGre--NkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV 162 (506)
T KOG3551|consen 85 ERRVRVVKQDAGGLGISIKGGRE--NKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEV 162 (506)
T ss_pred cceeEEEEecCCcceEEeecCcc--cCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCcee
Confidence 47899999889999999997332 2237999999999999999999999999999999999999999999999999987
Q ss_pred CeeE
Q psy3479 428 PTSM 431 (518)
Q Consensus 428 ~~~v 431 (518)
.+.+
T Consensus 163 ~lev 166 (506)
T KOG3551|consen 163 LLEV 166 (506)
T ss_pred eeee
Confidence 6654
No 36
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.68 E-value=1.7e-07 Score=75.07 Aligned_cols=77 Identities=29% Similarity=0.356 Sum_probs=62.1
Q ss_pred EEEEEeCCCCCceeEEEEeCCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCcCC
Q psy3479 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMP 428 (518)
Q Consensus 349 ~~V~L~k~~~~~lG~~i~~~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~v~ 428 (518)
+.+.+.+.. ..|||.+..... ...+++|..|.++++|+++| |++||+|++|||..+.++++.+....+...+..+.
T Consensus 3 ~~~~~~~~~-~~~G~~~~~~~~--~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~ 78 (85)
T smart00228 3 RLVELEKGG-GGLGFSLVGGKD--EGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVT 78 (85)
T ss_pred EEEEEEECC-CcccEEEECCCC--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence 357777865 789999975221 11589999999999999999 99999999999999999988888888877654433
Q ss_pred e
Q psy3479 429 T 429 (518)
Q Consensus 429 ~ 429 (518)
+
T Consensus 79 l 79 (85)
T smart00228 79 L 79 (85)
T ss_pred E
Confidence 3
No 37
>KOG3549|consensus
Probab=98.68 E-value=2.7e-08 Score=96.37 Aligned_cols=83 Identities=25% Similarity=0.347 Sum_probs=74.3
Q ss_pred cEEEEEeCCCCCceeEEEEeCCCCCcCC-cEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCc
Q psy3479 348 QKEVVVPKAKGEILGVVIVESGWGSMLP-TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKT 426 (518)
Q Consensus 348 ~~~V~L~k~~~~~lG~~i~~~~~g~~~~-g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~ 426 (518)
.|+|+|.|..-++||++|.| |.+.. .++|+.|.++.+|+..|.|-.||-|++|||..+..++|++++.+|+++++.
T Consensus 55 eRtVtirRQ~vGGlGLSIKG---GaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGde 131 (505)
T KOG3549|consen 55 ERTVTIRRQKVGGLGLSIKG---GAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDE 131 (505)
T ss_pred ceeEEEEeeecCcceeeecc---ccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCE
Confidence 47899999888999999998 33333 689999999999999999999999999999999999999999999999998
Q ss_pred CCeeEEE
Q psy3479 427 MPTSMFR 433 (518)
Q Consensus 427 v~~~v~r 433 (518)
|.+.+..
T Consensus 132 VtlTV~~ 138 (505)
T KOG3549|consen 132 VTLTVKH 138 (505)
T ss_pred EEEEeHh
Confidence 8777643
No 38
>KOG0609|consensus
Probab=98.59 E-value=1.1e-07 Score=98.07 Aligned_cols=80 Identities=33% Similarity=0.520 Sum_probs=73.3
Q ss_pred EEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEE
Q psy3479 66 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVK 145 (518)
Q Consensus 66 v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~ 145 (518)
|.|.|..++.||.++..... . .++|+.|+.||.|+|.|.|++||.|++|||+++.+....+++.+|+++. +.++
T Consensus 126 v~i~k~~~eplG~Tik~~e~---~-~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~--G~it 199 (542)
T KOG0609|consen 126 VRIVKNTGEPLGATIRVEED---T-KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR--GSIT 199 (542)
T ss_pred EEEeecCCCccceEEEeccC---C-ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC--CcEE
Confidence 88899999999999985442 2 5899999999999999999999999999999999999999999999999 5899
Q ss_pred EEEEeC
Q psy3479 146 LTVVPC 151 (518)
Q Consensus 146 l~v~~~ 151 (518)
+.|.+.
T Consensus 200 fkiiP~ 205 (542)
T KOG0609|consen 200 FKIIPS 205 (542)
T ss_pred EEEccc
Confidence 999765
No 39
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.59 E-value=3.6e-07 Score=96.91 Aligned_cols=126 Identities=17% Similarity=0.258 Sum_probs=85.7
Q ss_pred EEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCceeE--EEeeC-CCC----
Q psy3479 92 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVE--VKIKR-PDT---- 164 (518)
Q Consensus 92 ~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~~--~~~~r-p~~---- 164 (518)
.+|..|.++|||+++| |++||.|++|||+.+.+. ++....+.....+..++++|.|.....+ +.+.. |..
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~ 204 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPD 204 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCcc
Confidence 3799999999999999 999999999999999977 4555555555544689999998765332 23321 100
Q ss_pred ----ccccceEecCCCCCCCCCCCCCcccccccccceeEeeecccCCCCCCCCCCccceeeeceEEEEcccchhhhhHHH
Q psy3479 165 ----KYQLGFSVQNGVAPEGETQPSTEVDLFISTEKIMVLNTDLKAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDH 240 (518)
Q Consensus 165 ----~~~~g~~v~~~~~~~~~~~P~~~~~~~~s~~~~gi~v~~i~~p~g~a~~~~~g~L~~gD~il~Vng~~~~~~~~~e 240 (518)
...+|+ .+. .|. ....|+.+. |+++|+.. +|+.||.|++|||..+.+. ++
T Consensus 205 ~~~~~~~lGl------~~~---~~~-----------~~~vV~~V~-~~SpA~~A---GL~~GDvIl~Ing~~V~s~--~d 258 (449)
T PRK10779 205 KQDPVSSLGI------RPR---GPQ-----------IEPVLAEVQ-PNSAASKA---GLQAGDRIVKVDGQPLTQW--QT 258 (449)
T ss_pred ccchhhcccc------ccc---CCC-----------cCcEEEeeC-CCCHHHHc---CCCCCCEEEEECCEEcCCH--HH
Confidence 001111 000 010 235788897 99998776 7999999999999988653 33
Q ss_pred HHHHhh
Q psy3479 241 ALRTIS 246 (518)
Q Consensus 241 av~~lk 246 (518)
..+.++
T Consensus 259 l~~~l~ 264 (449)
T PRK10779 259 FVTLVR 264 (449)
T ss_pred HHHHHH
Confidence 444443
No 40
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.55 E-value=1.7e-07 Score=74.99 Aligned_cols=56 Identities=30% Similarity=0.424 Sum_probs=44.9
Q ss_pred cccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhh
Q psy3479 451 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512 (518)
Q Consensus 451 ~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk 512 (518)
.||+.+... ....+++|.+|.++|||+++| |++||+|++|||.++. +..++..+|.
T Consensus 2 ~lGv~~~~~---~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~ 57 (82)
T PF13180_consen 2 GLGVTVQNL---SDTGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILS 57 (82)
T ss_dssp E-SEEEEEC---SCSSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHH
T ss_pred EECeEEEEc---cCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHH
Confidence 578888632 123479999999999999999 9999999999999994 4588888885
No 41
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.52 E-value=3.2e-07 Score=73.82 Aligned_cols=58 Identities=26% Similarity=0.429 Sum_probs=50.2
Q ss_pred ccccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhh
Q psy3479 450 EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 513 (518)
Q Consensus 450 ~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~ 513 (518)
.+||+.+.. ...+++|..|.+++||+++| |++||+|++|||.++.+++++++..+++.
T Consensus 2 ~~lG~~~~~-----~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~ 59 (85)
T cd00988 2 GGIGLELKY-----DDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRG 59 (85)
T ss_pred eEEEEEEEE-----cCCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcC
Confidence 367888762 22468999999999999999 99999999999999999988999998865
No 42
>KOG1892|consensus
Probab=98.52 E-value=2.1e-07 Score=100.39 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=72.9
Q ss_pred EEEEEeCCCCCceeEEEEe-CCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCcC
Q psy3479 349 KEVVVPKAKGEILGVVIVE-SGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTM 427 (518)
Q Consensus 349 ~~V~L~k~~~~~lG~~i~~-~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~v 427 (518)
..|+|.|+ +|+|++|+. .+.|-+.-||||+.|.+|++|+.+|||+.||++|+|||.++.+.+.+.|..++.+.+..|
T Consensus 935 ~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV 1012 (1629)
T KOG1892|consen 935 ITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVV 1012 (1629)
T ss_pred EEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCeE
Confidence 57889885 689999974 455666679999999999999999999999999999999999999999999999998877
Q ss_pred CeeEEE
Q psy3479 428 PTSMFR 433 (518)
Q Consensus 428 ~~~v~r 433 (518)
.+.|..
T Consensus 1013 ~leVaK 1018 (1629)
T KOG1892|consen 1013 HLEVAK 1018 (1629)
T ss_pred EEehhh
Confidence 776643
No 43
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.51 E-value=9.7e-07 Score=70.12 Aligned_cols=73 Identities=26% Similarity=0.354 Sum_probs=54.2
Q ss_pred eeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCcee
Q psy3479 76 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVV 155 (518)
Q Consensus 76 lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~ 155 (518)
||+.+...+ .+++|..|.+++||+++| |++||.|++|||..+.. ..++++....+..+.|++.|.....
T Consensus 3 ~G~~~~~~~-----~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~-----~~~~l~~~~~~~~v~l~v~r~g~~~ 71 (80)
T cd00990 3 LGLTLDKEE-----GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA-----LQDRLKEYQAGDPVELTVFRDDRLI 71 (80)
T ss_pred ccEEEEccC-----CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH-----HHHHHHhcCCCCEEEEEEEECCEEE
Confidence 788886432 368999999999999999 99999999999999876 3334554322347888888765444
Q ss_pred EEEe
Q psy3479 156 EVKI 159 (518)
Q Consensus 156 ~~~~ 159 (518)
.+.+
T Consensus 72 ~~~v 75 (80)
T cd00990 72 EVPL 75 (80)
T ss_pred EEEE
Confidence 4333
No 44
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.51 E-value=1.3e-06 Score=69.47 Aligned_cols=68 Identities=25% Similarity=0.368 Sum_probs=55.5
Q ss_pred CCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCceeEEEe
Q psy3479 89 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKI 159 (518)
Q Consensus 89 ~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~~~~~ 159 (518)
..|++|..|.+++||+++| |+.||.|++|||..+. +.++...+|+....+..+.|++.|......+.+
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~~~~~~~ 76 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTTKLTNVS 76 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCEEEEEEE
Confidence 4589999999999999999 9999999999999998 557888888876433589999988765444443
No 45
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.47 E-value=6.1e-07 Score=93.28 Aligned_cols=89 Identities=22% Similarity=0.311 Sum_probs=73.0
Q ss_pred EEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEE
Q psy3479 66 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVK 145 (518)
Q Consensus 66 v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~ 145 (518)
...... -+++|+.+..... .++.|.+..+++||+++| |++||+|++|||.++.+++.++|+..||..+. +.|+
T Consensus 93 ~~~~~~-~~GiG~~i~~~~~----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~G-t~V~ 165 (406)
T COG0793 93 TDTSGE-FGGIGIELQMEDI----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPG-TKVT 165 (406)
T ss_pred hhcccc-ccceeEEEEEecC----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCC-CeEE
Confidence 444443 3459999986442 478999999999999999 99999999999999999999999999999985 8999
Q ss_pred EEEEeC--CceeEEEeeC
Q psy3479 146 LTVVPC--APVVEVKIKR 161 (518)
Q Consensus 146 l~v~~~--~~~~~~~~~r 161 (518)
|+|.|. .....+.+.|
T Consensus 166 L~i~r~~~~k~~~v~l~R 183 (406)
T COG0793 166 LTILRAGGGKPFTVTLTR 183 (406)
T ss_pred EEEEEcCCCceeEEEEEE
Confidence 999996 3334455554
No 46
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.44 E-value=2.3e-06 Score=67.65 Aligned_cols=74 Identities=26% Similarity=0.374 Sum_probs=57.1
Q ss_pred eeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCcee
Q psy3479 76 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVV 155 (518)
Q Consensus 76 lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~ 155 (518)
|||..-. ....++|..|.+++||++.| |++||.|++|||..+.+ .++...+|+.... ..+.|++.|.....
T Consensus 3 ~~~~~g~-----~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~~-~~~~l~v~r~~~~~ 73 (79)
T cd00989 3 LGFVPGG-----PPIEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENPG-KPLTLTVERNGETI 73 (79)
T ss_pred eeEeccC-----CccCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCCC-ceEEEEEEECCEEE
Confidence 5666632 23357899999999999999 99999999999999985 5788888887642 47888888765444
Q ss_pred EEE
Q psy3479 156 EVK 158 (518)
Q Consensus 156 ~~~ 158 (518)
.+.
T Consensus 74 ~~~ 76 (79)
T cd00989 74 TLT 76 (79)
T ss_pred EEE
Confidence 443
No 47
>KOG3552|consensus
Probab=98.43 E-value=2.3e-07 Score=99.97 Aligned_cols=85 Identities=27% Similarity=0.435 Sum_probs=71.6
Q ss_pred CccccccccceeEEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy3479 54 PKMICHVFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQT 133 (518)
Q Consensus 54 ~~~~~~vf~s~~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~ 133 (518)
..-.|-+++.+.|++.+... |||.++.+ . .++|..|.+|||+. |+|++||+||+|||.++...+.+.+++
T Consensus 47 ~~~~~i~~~pr~vq~~r~~~--lGFgfvag-----r-PviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervId 116 (1298)
T KOG3552|consen 47 EAPECIRWEPRQVQLQRNAS--LGFGFVAG-----R-PVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVID 116 (1298)
T ss_pred CCCccccCcchhhhhhcccc--ccceeecC-----C-ceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHH
Confidence 34567777777888887544 56655544 2 48999999999996 899999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEEe
Q psy3479 134 YIKNSKNQTVVKLTVVP 150 (518)
Q Consensus 134 ~l~~~~~~~~v~l~v~~ 150 (518)
++|.|.. .|.|+|++
T Consensus 117 lvRace~--sv~ltV~q 131 (1298)
T KOG3552|consen 117 LVRACES--SVNLTVCQ 131 (1298)
T ss_pred HHHHHhh--hcceEEec
Confidence 9999996 89999987
No 48
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.43 E-value=1.1e-06 Score=96.22 Aligned_cols=82 Identities=30% Similarity=0.515 Sum_probs=66.1
Q ss_pred cceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECC-----EEcCCCCHHHHHHHHhcCCCCcEEEEEE
Q psy3479 74 EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG-----VSLVGLPLSTCQTYIKNSKNQTVVKLTV 148 (518)
Q Consensus 74 ~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg-----~~l~~~~~~~~~~~l~~~~~~~~v~l~v 148 (518)
+++|+.+...+ ..++|..|.|||||++++.|++||+|++||| .++.|++.++++++|++... +.|+|+|
T Consensus 244 ~GIGa~l~~~~-----~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~G-t~V~LtV 317 (667)
T PRK11186 244 EGIGAVLQMDD-----DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKG-SKVRLEI 317 (667)
T ss_pred eEEEEEEEEeC-----CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCC-CEEEEEE
Confidence 45888887533 2588999999999999955999999999994 47889999999999998774 8999999
Q ss_pred EeCC---ceeEEEeeC
Q psy3479 149 VPCA---PVVEVKIKR 161 (518)
Q Consensus 149 ~~~~---~~~~~~~~r 161 (518)
.|.. ....+.+.|
T Consensus 318 ~r~~~~~~~~~vtl~R 333 (667)
T PRK11186 318 LPAGKGTKTRIVTLTR 333 (667)
T ss_pred EeCCCCCceEEEEEEe
Confidence 8732 234555555
No 49
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.40 E-value=2.4e-06 Score=88.88 Aligned_cols=86 Identities=27% Similarity=0.366 Sum_probs=68.5
Q ss_pred cceeEEEEecCC-cCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCC
Q psy3479 74 EILGVVIVESGW-GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCA 152 (518)
Q Consensus 74 ~~lG~~l~~~~~-~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~ 152 (518)
.++|+.+..... +....+++|..+.++|||+++| |+.||+|++|||+++.+++..++..+|+.... ..|.|+|.|..
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g-~~v~ltv~r~g 162 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEG-SSVELTLRRGP 162 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-CEEEEEEEECC
Confidence 458888764221 1112378999999999999999 99999999999999999999999999987553 68999999876
Q ss_pred ceeEEEeeC
Q psy3479 153 PVVEVKIKR 161 (518)
Q Consensus 153 ~~~~~~~~r 161 (518)
...++.+.|
T Consensus 163 ~~~~~~l~r 171 (389)
T PLN00049 163 ETRLVTLTR 171 (389)
T ss_pred EEEEEEEEe
Confidence 555666654
No 50
>KOG3938|consensus
Probab=98.38 E-value=5.2e-07 Score=84.68 Aligned_cols=80 Identities=26% Similarity=0.385 Sum_probs=72.0
Q ss_pred eEEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEE
Q psy3479 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVV 144 (518)
Q Consensus 65 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v 144 (518)
||.+.|+... ||++|...+. .-.||+.|.+||.-+|--.+++||.|-+|||+++.|+.|.++..+||+.+.+...
T Consensus 129 Ev~v~Kseda-lGlTITDNG~----GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~f 203 (334)
T KOG3938|consen 129 EVEVVKSEDA-LGLTITDNGA----GYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETF 203 (334)
T ss_pred eEEEEecccc-cceEEeeCCc----ceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCee
Confidence 7999999888 9999997664 3679999999999999889999999999999999999999999999999987766
Q ss_pred EEEEE
Q psy3479 145 KLTVV 149 (518)
Q Consensus 145 ~l~v~ 149 (518)
+|.+.
T Consensus 204 tlrLi 208 (334)
T KOG3938|consen 204 TLRLI 208 (334)
T ss_pred EEEee
Confidence 66654
No 51
>KOG3606|consensus
Probab=98.38 E-value=9.2e-07 Score=83.24 Aligned_cols=84 Identities=27% Similarity=0.495 Sum_probs=67.8
Q ss_pred eEEEEccCC-cceeEEEEecC------Cc-CCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHh
Q psy3479 65 EVVVPKAKG-EILGVVIVESG------WG-SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 136 (518)
Q Consensus 65 ~v~l~k~~~-~~lG~~l~~~~------~~-~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~ 136 (518)
.|.|.|... .+|||.|..+- .| ...||+||+.+.|||-|+..|.|-+.|++|+|||+-+.|.|++++..|+-
T Consensus 161 RVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMv 240 (358)
T KOG3606|consen 161 RVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMV 240 (358)
T ss_pred heehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHh
Confidence 378877544 37999998532 11 24689999999999999999999999999999999999999999999887
Q ss_pred cCCCCcEEEEEEEe
Q psy3479 137 NSKNQTVVKLTVVP 150 (518)
Q Consensus 137 ~~~~~~~v~l~v~~ 150 (518)
...+ -+-++|.+
T Consensus 241 ANsh--NLIiTVkP 252 (358)
T KOG3606|consen 241 ANSH--NLIITVKP 252 (358)
T ss_pred hccc--ceEEEecc
Confidence 6654 35555543
No 52
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.33 E-value=3.1e-06 Score=88.91 Aligned_cols=121 Identities=16% Similarity=0.192 Sum_probs=84.2
Q ss_pred CCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCceeEEEeeCCCCcccc
Q psy3479 89 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTKYQL 168 (518)
Q Consensus 89 ~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~~~~~~rp~~~~~~ 168 (518)
..+.+|.++.++|||+++| |++||.|++|||..+.+. .+....+.... ..+.+++.|......+.+ .+
T Consensus 127 ~~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~--~dl~~~ia~~~--~~v~~~I~r~g~~~~l~v-------~l 194 (420)
T TIGR00054 127 EVGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGF--KDVRQQIADIA--GEPMVEILAERENWTFEV-------MK 194 (420)
T ss_pred CCCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhc--ccceEEEEEecCceEecc-------cc
Confidence 3467899999999999999 999999999999998766 45555555555 367777776533222111 11
Q ss_pred ceEecCCCCCCCCCCCCCcccccccccceeEeeecccCCCCCCCCCCccceeeeceEEEEcccchhhhhHHHHHHHhhc
Q psy3479 169 GFSVQNGVAPEGETQPSTEVDLFISTEKIMVLNTDLKAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISY 247 (518)
Q Consensus 169 g~~v~~~~~~~~~~~P~~~~~~~~s~~~~gi~v~~i~~p~g~a~~~~~g~L~~gD~il~Vng~~~~~~~~~eav~~lk~ 247 (518)
++... .|. .+..|..+. ++++|+.. +|+.||.|++|||..+.+. ++..+.++.
T Consensus 195 ~~~~~---------~~~-----------~g~vV~~V~-~~SpA~~a---GL~~GD~Iv~Vng~~V~s~--~dl~~~l~~ 247 (420)
T TIGR00054 195 ELIPR---------GPK-----------IEPVLSDVT-PNSPAEKA---GLKEGDYIQSINGEKLRSW--TDFVSAVKE 247 (420)
T ss_pred cceec---------CCC-----------cCcEEEEEC-CCCHHHHc---CCCCCCEEEEECCEECCCH--HHHHHHHHh
Confidence 11100 011 346888897 89988776 7999999999999998764 455555544
No 53
>KOG3571|consensus
Probab=98.33 E-value=1.1e-06 Score=89.29 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=68.0
Q ss_pred cEEEEEeCCCCCceeEEEEeCCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCc
Q psy3479 348 QKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKT 426 (518)
Q Consensus 348 ~~~V~L~k~~~~~lG~~i~~~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~ 426 (518)
..+|.|....-..||++|++..+.....||||..|.++++.+.+||+.+||.||+||.++.++++-++|+..|+.+-.+
T Consensus 250 IITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~ 328 (626)
T KOG3571|consen 250 IITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSR 328 (626)
T ss_pred EEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhcc
Confidence 4678888765567999999844433456899999999999999999999999999999999999999999999987554
No 54
>KOG3651|consensus
Probab=98.30 E-value=1.6e-06 Score=82.74 Aligned_cols=73 Identities=27% Similarity=0.452 Sum_probs=60.0
Q ss_pred eccCCCCccccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhcCCC
Q psy3479 443 VVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHL 517 (518)
Q Consensus 443 ~~~~~~~~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~~~~ 517 (518)
.+.+....-.|++|. +| ...-|-+||..|..++||+++|+++.||.|++|||.+|.+.+..++.+||+.+-+.
T Consensus 9 ~ltKD~~nliGISIG-GG-apyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~e 81 (429)
T KOG3651|consen 9 ELTKDEKNLIGISIG-GG-APYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNE 81 (429)
T ss_pred EEeeccccceeEEec-CC-CCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccc
Confidence 334444567899995 22 23335679999999999999999999999999999999999999999999986553
No 55
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.26 E-value=6e-06 Score=84.31 Aligned_cols=72 Identities=28% Similarity=0.466 Sum_probs=61.7
Q ss_pred cceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCC
Q psy3479 74 EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCA 152 (518)
Q Consensus 74 ~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~ 152 (518)
.+||+.+.... .+++|..|.++|||+++| |++||+|++|||..+.+++..++..+|+... +..|.|+|.|..
T Consensus 51 ~~lG~~~~~~~-----~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-g~~v~l~v~R~g 122 (334)
T TIGR00225 51 EGIGIQVGMDD-----GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKK-GTKVSLEILRAG 122 (334)
T ss_pred EEEEEEEEEEC-----CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCC-CCEEEEEEEeCC
Confidence 35999987533 268999999999999999 9999999999999999998888888887754 368999998874
No 56
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.24 E-value=1.1e-05 Score=64.04 Aligned_cols=63 Identities=29% Similarity=0.334 Sum_probs=50.8
Q ss_pred cEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCceeEE
Q psy3479 91 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEV 157 (518)
Q Consensus 91 ~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~~~ 157 (518)
|++|..|.+++||+. | |++||.|++|||..+.. .++...+|+....+..+.|++.|......+
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g~~~~~ 71 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREEKELPE 71 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEEEEE
Confidence 689999999999986 7 99999999999999974 567888887644345899999876544333
No 57
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain. SHC phosphotyrosine-binding (PTB) domain. SHC is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. SHC contains an PTB domain followed by an SH2 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=98.24 E-value=4.8e-07 Score=79.82 Aligned_cols=49 Identities=27% Similarity=0.502 Sum_probs=40.8
Q ss_pred ccccchhhhhhhhccccccceee----ecCcEEEEEEeecCCCCCCCCCCCCCCCCcccccccccee
Q psy3479 3 TFNDRVHKEIMMDHALRTISYIA----DIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE 65 (518)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~vf~s~~ 65 (518)
.+-+--|||.||+|+|++|||+| |+.+++..||+++. .++.||||++.+
T Consensus 87 ~~~~~~t~~ii~~H~l~~ISfaa~gd~d~~~~~ayIAKd~~--------------~~r~ChVf~~~~ 139 (160)
T cd01209 87 NLMAQDCKQIIANHHMQSISFASGGDPDTAEYVAYIAKNPD--------------NQRACHVLECPE 139 (160)
T ss_pred EEeccCchhHHhcCCCcceEEEeCCCCCcceeEEEEEcCCC--------------CCceeEEEEcCC
Confidence 34455589999999999999999 78999999999863 467899998654
No 58
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.23 E-value=2.7e-06 Score=67.51 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=41.2
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhc
Q psy3479 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 514 (518)
Q Consensus 466 ~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~ 514 (518)
.|++|.+|.++|||+++| |++||+|++|||.++. +++++..+|+..
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~ 55 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPT 55 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcC
Confidence 478999999999999999 9999999999999997 458888888763
No 59
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.19 E-value=4e-06 Score=66.56 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=42.4
Q ss_pred cccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHh
Q psy3479 451 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI 511 (518)
Q Consensus 451 ~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~l 511 (518)
.+|+.+.. ...+++|.+|.++|+|+++| |++||+|++|||.++.+ +.+++..+
T Consensus 2 ~~G~~~~~-----~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~ 54 (80)
T cd00990 2 YLGLTLDK-----EEGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY 54 (80)
T ss_pred cccEEEEc-----cCCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc
Confidence 46777752 22468999999999999999 99999999999999976 45555444
No 60
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.14 E-value=9.9e-06 Score=64.02 Aligned_cols=56 Identities=32% Similarity=0.478 Sum_probs=46.5
Q ss_pred ceeEEEEeCCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHh
Q psy3479 360 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKIL 423 (518)
Q Consensus 360 ~lG~~i~~~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~ 423 (518)
++||.. |.....++|..|.++++|+++| |++||.|++|||..+. ++++....+...
T Consensus 2 ~~~~~~-----g~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~~ 57 (79)
T cd00989 2 ILGFVP-----GGPPIEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQEN 57 (79)
T ss_pred eeeEec-----cCCccCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHC
Confidence 477776 4444468999999999999999 9999999999999998 567777777764
No 61
>KOG3542|consensus
Probab=98.12 E-value=4.3e-06 Score=87.63 Aligned_cols=80 Identities=28% Similarity=0.399 Sum_probs=69.9
Q ss_pred eEEEEc-cCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcE
Q psy3479 65 EVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTV 143 (518)
Q Consensus 65 ~v~l~k-~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~ 143 (518)
.|.|.| .....|=|.++++.. ..-|+||..|.||+-|+++| |+-||+||+|||++..+++...|.++|++.- .
T Consensus 538 qviLtk~sre~pl~f~L~GGsE--kGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnt---h 611 (1283)
T KOG3542|consen 538 QVILTKASREDPLMFRLVGGSE--KGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNT---H 611 (1283)
T ss_pred eEEEecccccCCceeEeccCcc--ccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCc---e
Confidence 588888 445679999996543 35689999999999999999 9999999999999999999999999999887 7
Q ss_pred EEEEEEe
Q psy3479 144 VKLTVVP 150 (518)
Q Consensus 144 v~l~v~~ 150 (518)
++|+|..
T Consensus 612 LtltvKt 618 (1283)
T KOG3542|consen 612 LTLTVKT 618 (1283)
T ss_pred EEEEEec
Confidence 8888854
No 62
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.12 E-value=2e-05 Score=63.85 Aligned_cols=60 Identities=32% Similarity=0.463 Sum_probs=49.4
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCC
Q psy3479 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCA 152 (518)
Q Consensus 90 ~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~ 152 (518)
.+++|..|.+++||+++| |++||.|++|||..+.+. .+..++++....+..+.|.+.|..
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 489999999999999999 999999999999999855 456677776543357888887654
No 63
>KOG3606|consensus
Probab=98.10 E-value=6.3e-06 Score=77.71 Aligned_cols=82 Identities=26% Similarity=0.440 Sum_probs=68.8
Q ss_pred cCccEEEEEeCCC-CCceeEEEEeC------CCCC-cCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHH
Q psy3479 345 KELQKEVVVPKAK-GEILGVVIVES------GWGS-MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 416 (518)
Q Consensus 345 ~~~~~~V~L~k~~-~~~lG~~i~~~------~~g~-~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~ 416 (518)
+|..+.|.|+|-+ ..+|||.|.+| +.|. ..|||||++..+|+.|+..|.|-+.|++++|||..|.+.+.+++
T Consensus 156 PEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQV 235 (358)
T KOG3606|consen 156 PETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQV 235 (358)
T ss_pred chhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHH
Confidence 3667889999943 47999999873 3333 34699999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCc
Q psy3479 417 QTYIKILMKT 426 (518)
Q Consensus 417 ~~~l~~~~~~ 426 (518)
..++-.....
T Consensus 236 TDMMvANshN 245 (358)
T KOG3606|consen 236 TDMMVANSHN 245 (358)
T ss_pred HHHHhhcccc
Confidence 9988765543
No 64
>KOG3542|consensus
Probab=97.91 E-value=7.3e-06 Score=85.93 Aligned_cols=68 Identities=29% Similarity=0.443 Sum_probs=59.2
Q ss_pred CCCccccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhcCCC
Q psy3479 447 AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHL 517 (518)
Q Consensus 447 ~~~~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~~~~ 517 (518)
.....|-|.+. +|.... -++||.+|.||+.|+++| |+.||+|++|||++.++++...|.++|+.+.|+
T Consensus 545 sre~pl~f~L~-GGsEkG-fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnthL 612 (1283)
T KOG3542|consen 545 SREDPLMFRLV-GGSEKG-FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNTHL 612 (1283)
T ss_pred cccCCceeEec-cCcccc-ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCceE
Confidence 34467888887 554333 269999999999999999 999999999999999999999999999999876
No 65
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.90 E-value=9.9e-05 Score=72.17 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=63.1
Q ss_pred ceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCce
Q psy3479 75 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPV 154 (518)
Q Consensus 75 ~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~ 154 (518)
.+|+.....+ | ...|+.|..+.+++||++.| |+.||.|++|||+++... +++.+++.+...+..++|+|.|....
T Consensus 178 ~lgi~p~~~~-g-~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 178 YIRLSPVMKN-D-KLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred eEeEEEEEeC-C-ceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCEE
Confidence 4788876433 2 25689999999999999999 999999999999999854 55777777766656899999987655
Q ss_pred eEEEe
Q psy3479 155 VEVKI 159 (518)
Q Consensus 155 ~~~~~ 159 (518)
.++.+
T Consensus 253 ~~i~v 257 (259)
T TIGR01713 253 EDIYV 257 (259)
T ss_pred EEEEE
Confidence 44433
No 66
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.90 E-value=2.6e-05 Score=61.83 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=38.3
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhh
Q psy3479 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 513 (518)
Q Consensus 467 ~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~ 513 (518)
|++|..|.++|||+. | |++||+|++|||.++.+ ++++..+|+.
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~ 51 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQS 51 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHh
Confidence 689999999999996 8 99999999999999964 5788888874
No 67
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.89 E-value=2.3e-05 Score=63.49 Aligned_cols=46 Identities=30% Similarity=0.486 Sum_probs=39.9
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhc
Q psy3479 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 514 (518)
Q Consensus 466 ~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~ 514 (518)
.+++|.+|.++|+|+++| |++||+|++|||.++.++ .++.++++..
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~--~~~~~~l~~~ 69 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV--ADLRRALAEL 69 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH--HHHHHHHHhc
Confidence 378999999999999999 999999999999999754 6777777653
No 68
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.87 E-value=2.7e-05 Score=79.50 Aligned_cols=59 Identities=27% Similarity=0.392 Sum_probs=49.9
Q ss_pred CccccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhh
Q psy3479 449 GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 513 (518)
Q Consensus 449 ~~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~ 513 (518)
..++|+.+.. ...+++|..|.++|||+++| |++||+|++|||+++.+++.+++..+|+.
T Consensus 50 ~~~lG~~~~~-----~~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~ 108 (334)
T TIGR00225 50 LEGIGIQVGM-----DDGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRG 108 (334)
T ss_pred eEEEEEEEEE-----ECCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccC
Confidence 3567888752 12368999999999999999 99999999999999999988888888754
No 69
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.84 E-value=4e-05 Score=79.76 Aligned_cols=63 Identities=29% Similarity=0.395 Sum_probs=50.2
Q ss_pred ccccEEEEecC-CCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhh
Q psy3479 450 EILGVVIVESG-WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 513 (518)
Q Consensus 450 ~~lG~~i~~~g-~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~ 513 (518)
.++|+.+.... .+.+..+++|..|.++|||+++| |++||+|++|||+++.++++.++..+|+.
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g 148 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQG 148 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence 46777765211 11112368999999999999999 99999999999999999999999988864
No 70
>KOG4371|consensus
Probab=97.81 E-value=5.7e-05 Score=83.05 Aligned_cols=152 Identities=19% Similarity=0.295 Sum_probs=109.5
Q ss_pred eEEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEE
Q psy3479 65 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVV 144 (518)
Q Consensus 65 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v 144 (518)
++.+.|+++. ||..++.. ...+.|+.+.-.+.-.+-. |++||.++.|||+-+.+.-|.+|+.+++..++ .|
T Consensus 1150 ~~~~~r~~~~-l~~~~a~~-----~~~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~--~~ 1220 (1332)
T KOG4371|consen 1150 DVELDRNEGS-LGVQIASL-----SGRVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGD--RV 1220 (1332)
T ss_pred cccCCCCCCC-CCceeccC-----ccceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCc--eE
Confidence 4777888866 99999732 2246677776655555544 99999999999999999999999999999996 99
Q ss_pred EEEEEeCCcee-----------------EEEeeCCCCccccceEecCCCCCCCCCCCCCcccccccccceeEeeecccCC
Q psy3479 145 KLTVVPCAPVV-----------------EVKIKRPDTKYQLGFSVQNGVAPEGETQPSTEVDLFISTEKIMVLNTDLKAP 207 (518)
Q Consensus 145 ~l~v~~~~~~~-----------------~~~~~rp~~~~~~g~~v~~~~~~~~~~~P~~~~~~~~s~~~~gi~v~~i~~p 207 (518)
.|-|.|.+|-. ...+..|... +|++... ++| ..|+++..+. .
T Consensus 1221 ~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~--~~~~~~~-------~~~-----------s~~~~~~~~~-~ 1279 (1332)
T KOG4371|consen 1221 VLGVQRPPPAYSDQHHASSTSASAPLISVMLLKKPMAT--LGLSLAK-------RTM-----------SDGIFIRNIA-Q 1279 (1332)
T ss_pred EEEeecCCcccccchhhhhhcccchhhhheeeeccccc--ccccccc-------cCc-----------CCceeeeccc-c
Confidence 99999987632 1122223332 2222211 011 2567877775 3
Q ss_pred CCCCCCCCccceeeeceEEEEcccchhhhhHHHHHHHhhcc
Q psy3479 208 EGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYI 248 (518)
Q Consensus 208 ~g~a~~~~~g~L~~gD~il~Vng~~~~~~~~~eav~~lk~~ 248 (518)
. ++...++.+++||+++...+.++.+.+..+.++-++..
T Consensus 1280 ~--~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v 1318 (1332)
T KOG4371|consen 1280 D--SAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLV 1318 (1332)
T ss_pred c--ccccccccccccceeeccCCccCCCCChHHHHHHhhhc
Confidence 3 33445689999999999999999999888888877765
No 71
>KOG3552|consensus
Probab=97.80 E-value=2.7e-05 Score=84.46 Aligned_cols=76 Identities=24% Similarity=0.419 Sum_probs=64.7
Q ss_pred cEEEEEeCCCCCceeEEEEeCCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCcC
Q psy3479 348 QKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTM 427 (518)
Q Consensus 348 ~~~V~L~k~~~~~lG~~i~~~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~v 427 (518)
+|.|.+.+.. .|||-++. | ..++|..|.+|||+ .|+|++||+|++|||.++.+.+|+.++++++.|...+
T Consensus 56 pr~vq~~r~~--~lGFgfva---g---rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv 125 (1298)
T KOG3552|consen 56 PRQVQLQRNA--SLGFGFVA---G---RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSV 125 (1298)
T ss_pred chhhhhhccc--cccceeec---C---CceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHhhhc
Confidence 6778888854 46666654 3 24789999999998 5789999999999999999999999999999999998
Q ss_pred CeeEEE
Q psy3479 428 PTSMFR 433 (518)
Q Consensus 428 ~~~v~r 433 (518)
.+.|++
T Consensus 126 ~ltV~q 131 (1298)
T KOG3552|consen 126 NLTVCQ 131 (1298)
T ss_pred ceEEec
Confidence 888876
No 72
>KOG0609|consensus
Probab=97.75 E-value=5.9e-05 Score=78.27 Aligned_cols=84 Identities=29% Similarity=0.395 Sum_probs=72.6
Q ss_pred CccEEEEEeCCCCCceeEEEEeCCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcC
Q psy3479 346 ELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMK 425 (518)
Q Consensus 346 ~~~~~V~L~k~~~~~lG~~i~~~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~ 425 (518)
+..+.|.+.|..+.+||.++.-.. ...++|..|..|+.+++.|.|+.||.|++|||.++.+.+..+...+|+.+.+
T Consensus 121 ~~vriv~i~k~~~eplG~Tik~~e----~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G 196 (542)
T KOG0609|consen 121 EAVRIVRIVKNTGEPLGATIRVEE----DTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRG 196 (542)
T ss_pred ceeEEEEEeecCCCccceEEEecc----CCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCC
Confidence 446889999987899999997411 1268999999999999999999999999999999999999999999999988
Q ss_pred cCCeeEEE
Q psy3479 426 TMPTSMFR 433 (518)
Q Consensus 426 ~v~~~v~r 433 (518)
.+.+.++.
T Consensus 197 ~itfkiiP 204 (542)
T KOG0609|consen 197 SITFKIIP 204 (542)
T ss_pred cEEEEEcc
Confidence 77666543
No 73
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=6e-05 Score=78.52 Aligned_cols=60 Identities=23% Similarity=0.332 Sum_probs=51.8
Q ss_pred CccccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhh
Q psy3479 449 GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 513 (518)
Q Consensus 449 ~~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~ 513 (518)
.+++|+.+... ...++.|.++.+++||+++| |++||+|+.|||.++.+++.+++++.|+-
T Consensus 99 ~~GiG~~i~~~----~~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG 158 (406)
T COG0793 99 FGGIGIELQME----DIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRG 158 (406)
T ss_pred ccceeEEEEEe----cCCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCC
Confidence 46778887631 11468999999999999999 99999999999999999999999998875
No 74
>KOG4371|consensus
Probab=97.67 E-value=7.9e-05 Score=82.01 Aligned_cols=154 Identities=22% Similarity=0.315 Sum_probs=112.7
Q ss_pred EEEEEeCCCCCceeEEEEeCCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCcCC
Q psy3479 349 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMP 428 (518)
Q Consensus 349 ~~V~L~k~~~~~lG~~i~~~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~v~ 428 (518)
..+++.|+. +.||..++...- .+.++...-.+.-.+-. |+.||.++.+||..+++.-|.+++..++..++.+.
T Consensus 1149 i~~~~~r~~-~~l~~~~a~~~~-----~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~ 1221 (1332)
T KOG4371|consen 1149 IDVELDRNE-GSLGVQIASLSG-----RVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVV 1221 (1332)
T ss_pred ccccCCCCC-CCCCceeccCcc-----ceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCceEE
Confidence 346677754 789999874211 23445444444444444 99999999999999999999999999998888776
Q ss_pred eeEEEeeeec-----------c---cceeccCCCCccccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEE
Q psy3479 429 TSMFRLLTGQ-----------E---TPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 494 (518)
Q Consensus 429 ~~v~r~~~~~-----------~---~~~~~~~~~~~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~V 494 (518)
+.+.|-...- . ..+.+.+++-.++|+.+... .+..++||..+..++.|...|.|++||++...
T Consensus 1222 ~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~---~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~ 1298 (1332)
T KOG4371|consen 1222 LGVQRPPPAYSDQHHASSTSASAPLISVMLLKKPMATLGLSLAKR---TMSDGIFIRNIAQDSAASSEGTLRVGDRLVSL 1298 (1332)
T ss_pred EEeecCCcccccchhhhhhcccchhhhheeeeccccccccccccc---CcCCceeeecccccccccccccccccceeecc
Confidence 6665522100 0 12445667778889888632 34568999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHHHHhh
Q psy3479 495 NGVSLVGLPLSTCQTYIK 512 (518)
Q Consensus 495 Ng~~v~~~s~~e~v~~lk 512 (518)
+|+++.+.+-.+.++.++
T Consensus 1299 ~~~~~~~~~p~~~l~~~~ 1316 (1332)
T KOG4371|consen 1299 DGEPVDGFTPATILEKLK 1316 (1332)
T ss_pred CCccCCCCChHHHHHHhh
Confidence 999999988776666554
No 75
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.55 E-value=0.00036 Score=71.69 Aligned_cols=67 Identities=25% Similarity=0.443 Sum_probs=54.3
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCceeEEEe
Q psy3479 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKI 159 (518)
Q Consensus 90 ~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~~~~~ 159 (518)
.|++|..|.+++||+++| |++||.|++|||+.+.. .++..+.|+....+..|.|+|.|.....++.+
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v 344 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLRQGKQLELPV 344 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence 489999999999999999 99999999999999975 45666777765444689999998765544444
No 76
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.54 E-value=0.00099 Score=58.57 Aligned_cols=98 Identities=24% Similarity=0.316 Sum_probs=63.2
Q ss_pred CcceeEEEEecCCc-CCCCcEEEEEecCCChhhhcCCCCC-CCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEe
Q psy3479 73 GEILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNI-GDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150 (518)
Q Consensus 73 ~~~lG~~l~~~~~~-~~~~~~~V~~v~~gg~A~~~G~L~~-GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~ 150 (518)
++.||++|.-.... ....++-|.+|.|+|||+++| |++ .|-|+.+++..+.+ .++..++++...+ ..+.|.|-.
T Consensus 25 ~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~--~~~l~~~v~~~~~-~~l~L~Vyn 100 (138)
T PF04495_consen 25 QGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDD--EDDLFELVEANEN-KPLQLYVYN 100 (138)
T ss_dssp SSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--S--TCHHHHHHHHTTT-S-EEEEEEE
T ss_pred CCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCC--HHHHHHHHHHcCC-CcEEEEEEE
Confidence 35699999864432 345677899999999999999 998 69999999988884 5677888888776 689999976
Q ss_pred CCc--eeEEEeeCCCC----ccccceEecCC
Q psy3479 151 CAP--VVEVKIKRPDT----KYQLGFSVQNG 175 (518)
Q Consensus 151 ~~~--~~~~~~~rp~~----~~~~g~~v~~~ 175 (518)
... +.++.+. |.. ..-||..+..|
T Consensus 101 s~~~~vR~V~i~-P~~~WgG~GlLGc~ig~G 130 (138)
T PF04495_consen 101 SKTDSVREVTIT-PSRNWGGRGLLGCHIGYG 130 (138)
T ss_dssp TTTTCEEEEEE----TTSSSSTSSSEEEE-S
T ss_pred CCCCeEEEEEEE-cCCCCCCCeeeeEEecce
Confidence 543 3455554 332 33356666544
No 77
>KOG4407|consensus
Probab=97.50 E-value=0.00014 Score=81.46 Aligned_cols=122 Identities=21% Similarity=0.299 Sum_probs=91.7
Q ss_pred EEEEEeCCCCCceeEEEEe-------------CCCC----CcC------CcEEEEEecCCChhhhcCCCCCCCEEEEEcC
Q psy3479 349 KEVVVPKAKGEILGVVIVE-------------SGWG----SML------PTVVIANLAPAGAAARCGQLNIGDQIIAVNG 405 (518)
Q Consensus 349 ~~V~L~k~~~~~lG~~i~~-------------~~~g----~~~------~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng 405 (518)
+.+.+.|..+.||||+|.- ...| ... .-+++..+..++++..+| +..||.|..|||
T Consensus 47 ~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~itG 125 (1973)
T KOG4407|consen 47 KLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAGITG 125 (1973)
T ss_pred ceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceeeecc
Confidence 3444445589999999862 0111 100 135667777788899999 999999999999
Q ss_pred eeccCCChHHHHHHHHHhcCcCCeeEEEeeeecccceeccCCCCccccEEEEecCCCCCCCcEEEEEECCCChhhhcCCC
Q psy3479 406 VSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETPVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQL 485 (518)
Q Consensus 406 ~~v~~~s~~~~~~~l~~~~~~v~~~v~r~~~~~~~~~~~~~~~~~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L 485 (518)
..+.+.+ ......++. ..-+||.+|.++++|.-+- |
T Consensus 126 ~e~~~~T-S~~~~~vk~------------------------------------------~eT~~~~eV~~n~~~~~a~-L 161 (1973)
T KOG4407|consen 126 LEPTSPT-SLPPYQVKA------------------------------------------METIFIKEVQANGPAHYAN-L 161 (1973)
T ss_pred cccCCCc-cccHHHHhh------------------------------------------hhhhhhhhhccCChhHHHh-h
Confidence 8887654 332233221 1136899999999999998 9
Q ss_pred CCCCEEEEECCEeCCCCCHHHHHHHhhhcC
Q psy3479 486 NIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 515 (518)
Q Consensus 486 ~~GD~Il~VNg~~v~~~s~~e~v~~lk~~~ 515 (518)
|-||+++.||.+++.++.+.+++.++|.+.
T Consensus 162 Q~~~~V~~v~~q~~A~i~~s~~~S~~~qt~ 191 (1973)
T KOG4407|consen 162 QTGDRVLMVNNQPIAGIAYSTIVSMIKQTP 191 (1973)
T ss_pred hccceeEEeecCcccchhhhhhhhhhccCC
Confidence 999999999999999999999999999864
No 78
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.50 E-value=0.00015 Score=79.57 Aligned_cols=58 Identities=33% Similarity=0.484 Sum_probs=47.2
Q ss_pred ccccEEEEecCCCCCCCcEEEEEECCCChhhhc-CCCCCCCEEEEECC-----EeCCCCCHHHHHHHhhh
Q psy3479 450 EILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNG-----VSLVGLPLSTCQTYIKV 513 (518)
Q Consensus 450 ~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~a-G~L~~GD~Il~VNg-----~~v~~~s~~e~v~~lk~ 513 (518)
.++|+.+... ...++|.+|.|||||+++ | |++||+|++||+ +++.+++.++++++|+-
T Consensus 244 ~GIGa~l~~~-----~~~~~V~~vipGsPA~ka~g-Lk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG 307 (667)
T PRK11186 244 EGIGAVLQMD-----DDYTVINSLVAGGPAAKSKK-LSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKG 307 (667)
T ss_pred eEEEEEEEEe-----CCeEEEEEccCCChHHHhCC-CCCCCEEEEECCCCCcccccccCCHHHHHHHhcC
Confidence 5667776521 135799999999999998 7 999999999994 46678999999999984
No 79
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.50 E-value=0.00077 Score=69.27 Aligned_cols=91 Identities=21% Similarity=0.473 Sum_probs=66.9
Q ss_pred CcceeEEEEecCCcCCCCcEEEEEec--------CCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEE
Q psy3479 73 GEILGVVIVESGWGSMLPTVVIANLA--------PAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVV 144 (518)
Q Consensus 73 ~~~lG~~l~~~~~~~~~~~~~V~~v~--------~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v 144 (518)
|..+|+.+. ..|++|.... .++||+++| |++||.|++|||..+.. .++..++|+..+. ..+
T Consensus 95 G~~iGI~l~-------t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s--~~DL~~iL~~~~g-~~V 163 (402)
T TIGR02860 95 GQSIGVKLN-------TKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKN--MDDLANLINKAGG-EKL 163 (402)
T ss_pred CEEEEEEEe-------cCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCC-CeE
Confidence 457888885 3366664432 368999999 99999999999999975 4778889988763 689
Q ss_pred EEEEEeCCceeEEEeeC----CCCccccceEecC
Q psy3479 145 KLTVVPCAPVVEVKIKR----PDTKYQLGFSVQN 174 (518)
Q Consensus 145 ~l~v~~~~~~~~~~~~r----p~~~~~~g~~v~~ 174 (518)
.|+|.|.....++.+.. .+..+.+|+-+..
T Consensus 164 ~LtV~R~Ge~~tv~V~Pv~~~~d~~ykLGl~VrD 197 (402)
T TIGR02860 164 TLTIERGGKIIETVIKPVKDKEEGRYRIGLYIRD 197 (402)
T ss_pred EEEEEECCEEEEEEEEEeeeCCCCCEEEEEEEEc
Confidence 99999887655555541 1455678887764
No 80
>PRK10898 serine endoprotease; Provisional
Probab=97.49 E-value=0.00055 Score=70.33 Aligned_cols=67 Identities=19% Similarity=0.400 Sum_probs=53.0
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCceeEEEe
Q psy3479 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKI 159 (518)
Q Consensus 90 ~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~~~~~ 159 (518)
.|++|..|.+++||+++| |++||.|++|||+.+... .+..+.|.....+..+.|+|.|.....++.+
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v 345 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQLTLQV 345 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence 589999999999999999 999999999999998754 4455556554444689999998765544444
No 81
>KOG3938|consensus
Probab=97.44 E-value=0.00018 Score=67.94 Aligned_cols=83 Identities=30% Similarity=0.429 Sum_probs=69.3
Q ss_pred ccEEEEEeCCCCCceeEEEEeCCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCc
Q psy3479 347 LQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKT 426 (518)
Q Consensus 347 ~~~~V~L~k~~~~~lG~~i~~~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~ 426 (518)
..++|++.|. ...||++|.+.+.| -+||+.|.++|..++--.+++||.|-+|||+++.++.|-++..+|+.....
T Consensus 126 q~kEv~v~Ks-edalGlTITDNG~G----yAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg 200 (334)
T KOG3938|consen 126 QAKEVEVVKS-EDALGLTITDNGAG----YAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG 200 (334)
T ss_pred cceeEEEEec-ccccceEEeeCCcc----eeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence 3578999995 56799999975543 479999999999999888999999999999999999999999999987665
Q ss_pred CCeeEEEee
Q psy3479 427 MPTSMFRLL 435 (518)
Q Consensus 427 v~~~v~r~~ 435 (518)
-.+. +|+.
T Consensus 201 e~ft-lrLi 208 (334)
T KOG3938|consen 201 ETFT-LRLI 208 (334)
T ss_pred CeeE-EEee
Confidence 3444 3443
No 82
>KOG3834|consensus
Probab=97.43 E-value=0.00086 Score=67.84 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=86.5
Q ss_pred EEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCcCCeeEEEeeeecccceeccCCCC---cccc
Q psy3479 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETPVVVPKAKG---EILG 453 (518)
Q Consensus 377 ~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~v~~~v~r~~~~~~~~~~~~~~~~---~~lG 453 (518)
.-|-+|..+|+|+++|...--|.|++|||..+..- .+....+|+....+|.+++.......-+.+.+..... ..||
T Consensus 17 ~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~sekVkltv~n~kt~~~R~v~I~ps~~wggqllG 95 (462)
T KOG3834|consen 17 YHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANSEKVKLTVYNSKTQEVRIVEIVPSNNWGGQLLG 95 (462)
T ss_pred EEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcccceEEEEEecccceeEEEEecccccccccccc
Confidence 34567999999999995555799999999998743 4555566666666666665443222222233333332 3488
Q ss_pred EEEEecCC-CCCCCcEEEEEECCCChhhhcCCCC-CCCEEEEE-CCEeCCCCCHHHHHHHhhhcC
Q psy3479 454 VVIVESGW-GSMLPTVVIANLAPAGAAARCGQLN-IGDQIIAV-NGVSLVGLPLSTCQTYIKVNH 515 (518)
Q Consensus 454 ~~i~~~g~-~~~~~~i~I~~V~~gs~A~~aG~L~-~GD~Il~V-Ng~~v~~~s~~e~v~~lk~~~ 515 (518)
+++.=... +.....--|-+|.+++||+++| |+ -+|-|+-+ |...-+ .++...+|.++.
T Consensus 96 vsvrFcsf~~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~~~---~eDl~~lIeshe 156 (462)
T KOG3834|consen 96 VSVRFCSFDGAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVMHE---EEDLFTLIESHE 156 (462)
T ss_pred eEEEeccCccchhheeeeeecCCCCHHHhcc-cccccceEecchhhhccc---hHHHHHHHHhcc
Confidence 88861111 0111123588999999999999 88 89999988 554332 367777776654
No 83
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.39 E-value=0.0017 Score=67.22 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=85.3
Q ss_pred EEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEE-eCCceeEEEeeCCCCccccceEe
Q psy3479 94 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVV-PCAPVVEVKIKRPDTKYQLGFSV 172 (518)
Q Consensus 94 V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~-~~~~~~~~~~~rp~~~~~~g~~v 172 (518)
|..|.|++||+++| |++||+|++|||+.+..+ .+....+.. ..+.|+|. +.....++.+. |+....||...
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw--~D~~~~l~~----e~l~L~V~~rdGe~~~l~Ie-~~~dedlG~~f 73 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDL--IDYQFLCAD----EELELEVLDANGESHQIEIE-KDLDEDLGLEF 73 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHhcC----CcEEEEEEcCCCeEEEEEEe-cCCCCCCcEEe
Confidence 67899999999999 999999999999999754 455555532 36888886 44444566666 46677888877
Q ss_pred cCCCCCCCCCCCCCcccccccccc-eeEeeecccCCCCCCCCCCccceeeeceEEEE---cccchhhhhHHHHHHHhhcc
Q psy3479 173 QNGVAPEGETQPSTEVDLFISTEK-IMVLNTDLKAPEGETQPSTEVDLFISTEKIMV---LNTDLKEIMMDHALRTISYI 248 (518)
Q Consensus 173 ~~~~~~~~~~~P~~~~~~~~s~~~-~gi~v~~i~~p~g~a~~~~~g~L~~gD~il~V---ng~~~~~~~~~eav~~lk~~ 248 (518)
.+.....-. +=.++ ...||... |.|--.. -.++-.|..++- |=+.+.|++-++.-++++.-
T Consensus 74 ~~~~~d~~~----------~C~N~C~FCFidQl--P~gmR~s---LY~KDDDyRLSFL~GnyiTLTNl~~~d~~RI~~~~ 138 (433)
T TIGR03279 74 TTALFDGLI----------QCNNRCPFCFIDQQ--PPGKRES---LYLKDDDYRLSFLYGSYLTLTNLPPAEWQRIEQLR 138 (433)
T ss_pred ccccCCccc----------ccCCcCceEeccCC--CCCCcCc---ceeccCcchhhhhccceeeecCCCHHHHHHHHHcC
Confidence 765431110 00111 24566666 3332111 234455666653 55777888888877777654
No 84
>KOG3129|consensus
Probab=97.28 E-value=0.0013 Score=60.28 Aligned_cols=74 Identities=22% Similarity=0.407 Sum_probs=54.9
Q ss_pred CCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCC-HHHHHHHHhcCCCCcEEEEEEEeCCceeEEEeeCCCCc
Q psy3479 89 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP-LSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTK 165 (518)
Q Consensus 89 ~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~-~~~~~~~l~~~~~~~~v~l~v~~~~~~~~~~~~rp~~~ 165 (518)
.|-++|..|.|+|||+++| ||+||.|+++..+.-.+.. +.......+.... ..|.++|.|........+. |+..
T Consensus 138 ~~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~-~~v~v~v~R~g~~v~L~lt-P~~W 212 (231)
T KOG3129|consen 138 RPFAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNED-QIVSVTVIREGQKVVLSLT-PKKW 212 (231)
T ss_pred cceEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccC-cceeEEEecCCCEEEEEeC-cccc
Confidence 5578899999999999999 9999999998876554444 5555555555554 6899999888766555554 4443
No 85
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.18 E-value=0.00053 Score=67.11 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=45.4
Q ss_pred ccccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhh
Q psy3479 450 EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 513 (518)
Q Consensus 450 ~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~ 513 (518)
..+|+.....+ + ...|+.|..+.++++|+++| |++||+|++|||+++.+. +++.+++..
T Consensus 177 ~~lgi~p~~~~-g-~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~ 235 (259)
T TIGR01713 177 DYIRLSPVMKN-D-KLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQM 235 (259)
T ss_pred heEeEEEEEeC-C-ceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHh
Confidence 35666654221 1 23478999999999999999 999999999999999765 666666654
No 86
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.16 E-value=0.0011 Score=58.39 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=45.3
Q ss_pred CccccEEEEecCCC-CCCCcEEEEEECCCChhhhcCCCCC-CCEEEEECCEeCCCCCHHHHHHHhhhcCC
Q psy3479 449 GEILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNI-GDQIIAVNGVSLVGLPLSTCQTYIKVNHH 516 (518)
Q Consensus 449 ~~~lG~~i~~~g~~-~~~~~i~I~~V~~gs~A~~aG~L~~-GD~Il~VNg~~v~~~s~~e~v~~lk~~~~ 516 (518)
...||+++.-.... ....+.-|-+|.|+|||++|| |++ .|-|+.+|+..+.+. +++.++++++.+
T Consensus 25 ~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~~v~~~~~ 91 (138)
T PF04495_consen 25 QGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFELVEANEN 91 (138)
T ss_dssp SSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHHHHHHTTT
T ss_pred CCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHHHHHHcCC
Confidence 46789998732222 234467899999999999999 999 699999999999854 788888887654
No 87
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.13 E-value=0.00056 Score=70.30 Aligned_cols=45 Identities=29% Similarity=0.502 Sum_probs=39.8
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhh
Q psy3479 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 513 (518)
Q Consensus 466 ~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~ 513 (518)
.|++|.+|.++|||+++| |++||+|++|||+++.+ ++++.++|+.
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~dl~~~l~~ 322 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG--AEELMDRIAE 322 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence 478999999999999999 99999999999999965 4777777764
No 88
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.11 E-value=0.0013 Score=68.46 Aligned_cols=70 Identities=29% Similarity=0.436 Sum_probs=52.4
Q ss_pred ceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCce
Q psy3479 75 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPV 154 (518)
Q Consensus 75 ~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~ 154 (518)
.||+.+...+ ....|+.|.++|||+++| |.+||.|++|||.+. .+...+-.-.+.+++.+..+.
T Consensus 452 ~LGl~v~~~~-----g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~----------~l~~~~~~d~i~v~~~~~~~L 515 (558)
T COG3975 452 YLGLKVKSEG-----GHEKITFVFPGGPAYKAG-LSPGDKIVAINGISD----------QLDRYKVNDKIQVHVFREGRL 515 (558)
T ss_pred ccceEecccC-----CeeEEEecCCCChhHhcc-CCCccEEEEEcCccc----------cccccccccceEEEEccCCce
Confidence 5999987433 367899999999999999 999999999999921 122222224788888888877
Q ss_pred eEEEee
Q psy3479 155 VEVKIK 160 (518)
Q Consensus 155 ~~~~~~ 160 (518)
.+..+.
T Consensus 516 ~e~~v~ 521 (558)
T COG3975 516 REFLVK 521 (558)
T ss_pred EEeecc
Confidence 766554
No 89
>PRK10898 serine endoprotease; Provisional
Probab=97.10 E-value=0.00086 Score=68.90 Aligned_cols=45 Identities=24% Similarity=0.465 Sum_probs=39.0
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhh
Q psy3479 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 513 (518)
Q Consensus 466 ~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~ 513 (518)
.|++|.+|.++|||+++| |++||+|++|||+++.++ +++.+.|+.
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~~l~~~l~~ 323 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISA--LETMDQVAE 323 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHh
Confidence 479999999999999999 999999999999999654 666666654
No 90
>KOG0606|consensus
Probab=97.04 E-value=0.0016 Score=73.16 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=67.0
Q ss_pred eEEEEccCCcceeEEEEe-----cCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Q psy3479 65 EVVVPKAKGEILGVVIVE-----SGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSK 139 (518)
Q Consensus 65 ~v~l~k~~~~~lG~~l~~-----~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~ 139 (518)
.|.|.+...+ |||++.- ++.....--..|.+|.+|+||...| |+.||.|..|||+.+.++.|.+++++|-+.+
T Consensus 629 pI~i~~~~~~-yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~g 706 (1205)
T KOG0606|consen 629 PITIHFSGKK-YGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSG 706 (1205)
T ss_pred ceeeeccccc-cCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcC
Confidence 3888887556 9998764 2221122235689999999999988 9999999999999999999999999999888
Q ss_pred CCcEEEEEEEeC
Q psy3479 140 NQTVVKLTVVPC 151 (518)
Q Consensus 140 ~~~~v~l~v~~~ 151 (518)
+ .|.+.+..+
T Consensus 707 n--~v~~~ttpl 716 (1205)
T KOG0606|consen 707 N--KVTLRTTPL 716 (1205)
T ss_pred C--eeEEEeecc
Confidence 6 788887655
No 91
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.01 E-value=0.001 Score=68.77 Aligned_cols=127 Identities=19% Similarity=0.248 Sum_probs=75.5
Q ss_pred EEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCcCCeeEEEeeeecccceeccCCCCccccEEEEe
Q psy3479 379 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETPVVVPKAKGEILGVVIVE 458 (518)
Q Consensus 379 I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~v~~~v~r~~~~~~~~~~~~~~~~~~lG~~i~~ 458 (518)
|..|.++|+|+++| |++||+|++|||+.+. +|.+....+. ...+.+.+.+ ..+......+.+..++.||+....
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~l~--~e~l~L~V~~-rdGe~~~l~Ie~~~dedlG~~f~~ 75 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFLCA--DEELELEVLD-ANGESHQIEIEKDLDEDLGLEFTT 75 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHhc--CCcEEEEEEc-CCCeEEEEEEecCCCCCCcEEecc
Confidence 56789999999999 9999999999999998 6677666663 2333333321 112222334555667889988752
Q ss_pred cCCCC----CCC--cEEEEEECCCChhhhcCCCCCCCE---EEEECCEeCCCCCHHHHHHHhhh
Q psy3479 459 SGWGS----MLP--TVVIANLAPAGAAARCGQLNIGDQ---IIAVNGVSLVGLPLSTCQTYIKV 513 (518)
Q Consensus 459 ~g~~~----~~~--~i~I~~V~~gs~A~~aG~L~~GD~---Il~VNg~~v~~~s~~e~v~~lk~ 513 (518)
.-.+. .+. =-||...-||- -..-= +|--|- .|.=|=+.+.|++.+|+-.+++.
T Consensus 76 ~~~d~~~~C~N~C~FCFidQlP~gm-R~sLY-~KDDDyRLSFL~GnyiTLTNl~~~d~~RI~~~ 137 (433)
T TIGR03279 76 ALFDGLIQCNNRCPFCFIDQQPPGK-RESLY-LKDDDYRLSFLYGSYLTLTNLPPAEWQRIEQL 137 (433)
T ss_pred ccCCcccccCCcCceEeccCCCCCC-cCcce-eccCcchhhhhccceeeecCCCHHHHHHHHHc
Confidence 11111 111 12555543322 11111 343443 23335577788888888888774
No 92
>KOG0606|consensus
Probab=96.80 E-value=0.0016 Score=73.08 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=57.6
Q ss_pred CCCCccccEEEEe-----cCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhcCCCC
Q psy3479 446 KAKGEILGVVIVE-----SGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHLC 518 (518)
Q Consensus 446 ~~~~~~lG~~i~~-----~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~~~~~ 518 (518)
...+..|||++.. |+.+.......|..|.++|||..+| |++||.|+.|||.+++++.|.|++++|-++++-|
T Consensus 633 ~~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v 709 (1205)
T KOG0606|consen 633 HFSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKV 709 (1205)
T ss_pred eccccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcCCee
Confidence 3456789988652 2222222234789999999999999 9999999999999999999999999999887643
No 93
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.79 E-value=0.021 Score=46.05 Aligned_cols=70 Identities=24% Similarity=0.264 Sum_probs=44.0
Q ss_pred eeEEEEecCCcCCCCcEEEEEecCC--------ChhhhcC-CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEE
Q psy3479 76 LGVVIVESGWGSMLPTVVIANLAPA--------GAAARCG-QLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKL 146 (518)
Q Consensus 76 lG~~l~~~~~~~~~~~~~V~~v~~g--------g~A~~~G-~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l 146 (518)
||.-+.-.+ .++.|.+|.+| ||-.+-| .+++||.|++|||+.+..-. ....+|.+..+ ..|.|
T Consensus 3 LGAd~~~~~-----~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~--~~~~lL~~~ag-k~V~L 74 (88)
T PF14685_consen 3 LGADFSYDN-----GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA--NPYRLLEGKAG-KQVLL 74 (88)
T ss_dssp -SEEEEEET-----TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTT-SEEEE
T ss_pred cceEEEEcC-----CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC--CHHHHhcccCC-CEEEE
Confidence 776666442 36789999997 6666655 35699999999999997542 24446666664 69999
Q ss_pred EEEeCCc
Q psy3479 147 TVVPCAP 153 (518)
Q Consensus 147 ~v~~~~~ 153 (518)
+|.+.+-
T Consensus 75 tv~~~~~ 81 (88)
T PF14685_consen 75 TVNRKPG 81 (88)
T ss_dssp EEE-STT
T ss_pred EEecCCC
Confidence 9987763
No 94
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=96.75 E-value=0.00051 Score=60.92 Aligned_cols=50 Identities=26% Similarity=0.356 Sum_probs=38.8
Q ss_pred cccchhhhhhhhccccccceeeecC---cEEEEEEeecCCCCCCCCCCCCCCCCcccccccccee
Q psy3479 4 FNDRVHKEIMMDHALRTISYIADIG---DLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE 65 (518)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~vf~s~~ 65 (518)
+-|.-|++.|++|+|+.|||+++.. ++.-+++|.... ..++.||||.+++
T Consensus 68 v~d~~t~~~~~~~~i~~ISfca~d~~~~r~FayIak~~~~------------~~~~~ChvF~s~~ 120 (142)
T cd01273 68 IAEPKTKAPMHTFPLGRISFCADDKDDKRMFSFIAKAEGA------------SGKHSCFVFTSEK 120 (142)
T ss_pred EEEcCCCcEEEEcCcceEEEEecCCCCCeEEEEEecCCCC------------CCcEEEEEEeccc
Confidence 4467799999999999999999764 456788876531 3479999998753
No 95
>KOG1320|consensus
Probab=96.74 E-value=0.015 Score=60.83 Aligned_cols=45 Identities=27% Similarity=0.441 Sum_probs=39.9
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhc
Q psy3479 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 514 (518)
Q Consensus 467 ~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~ 514 (518)
+++|..|.|+++|...+ +++||+|++|||+++.++ .++.++|..+
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~ 443 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEEC 443 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhc
Confidence 57899999999999999 999999999999999887 6667776654
No 96
>KOG1738|consensus
Probab=96.67 E-value=0.0024 Score=67.72 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=67.7
Q ss_pred EEEE-ccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEE
Q psy3479 66 VVVP-KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVV 144 (518)
Q Consensus 66 v~l~-k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v 144 (518)
|.+. .++++++|+-|...- ...++|..+.+++||++++++..||+++.||+..++|..+...++-|+.... -|
T Consensus 204 vqls~~kp~eglg~~I~Ssy----dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~s--gi 277 (638)
T KOG1738|consen 204 VQLSTLSPSEGLGLYIDSSY----DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPA--GI 277 (638)
T ss_pred HHhccCCcccCCceEEeeec----CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcc--cc
Confidence 4443 256778999997433 4568999999999999999999999999999999999999999999999994 66
Q ss_pred EEEEEeCC
Q psy3479 145 KLTVVPCA 152 (518)
Q Consensus 145 ~l~v~~~~ 152 (518)
.+++...+
T Consensus 278 ~l~lkKrp 285 (638)
T KOG1738|consen 278 ELTLKKRP 285 (638)
T ss_pred eeeeeccC
Confidence 66665443
No 97
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=96.37 E-value=0.015 Score=56.96 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=43.6
Q ss_pred hhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCceeEEEe
Q psy3479 104 ARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKI 159 (518)
Q Consensus 104 ~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~~~~~ 159 (518)
.+.| |+.||.+++|||.+|.. .+++.+++++..+.+.++|+|.|.....++.+
T Consensus 221 ~~~G-Lq~GDva~sING~dL~D--~~qa~~l~~~L~~~tei~ltVeRdGq~~~i~i 273 (276)
T PRK09681 221 DASG-FKEGDIAIALNQQDFTD--PRAMIALMRQLPSMDSIQLTVLRKGARHDISI 273 (276)
T ss_pred HHcC-CCCCCEEEEeCCeeCCC--HHHHHHHHHHhccCCeEEEEEEECCEEEEEEE
Confidence 3667 99999999999999995 45777788877777899999999877665544
No 98
>KOG3129|consensus
Probab=96.34 E-value=0.0074 Score=55.51 Aligned_cols=48 Identities=25% Similarity=0.464 Sum_probs=37.4
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCC-HHHHHHHhhhc
Q psy3479 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP-LSTCQTYIKVN 514 (518)
Q Consensus 466 ~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s-~~e~v~~lk~~ 514 (518)
+-.+|.+|.|+|||+++| |+.||.|+.+..+.-.+.. +.......+++
T Consensus 139 ~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~ 187 (231)
T KOG3129|consen 139 PFAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSN 187 (231)
T ss_pred ceEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhc
Confidence 346899999999999999 9999999999877665543 55555555544
No 99
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.32 E-value=0.0082 Score=61.85 Aligned_cols=57 Identities=21% Similarity=0.445 Sum_probs=43.1
Q ss_pred CccccEEEEecCCCCCCCcEEEEEE---C-----CCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhcC
Q psy3479 449 GEILGVVIVESGWGSMLPTVVIANL---A-----PAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 515 (518)
Q Consensus 449 ~~~lG~~i~~~g~~~~~~~i~I~~V---~-----~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~~ 515 (518)
+..+|+.+.. .|++|... . .++||+++| |++||+|++|||.++.+ ++|+.++|+...
T Consensus 95 G~~iGI~l~t-------~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s--~~DL~~iL~~~~ 159 (402)
T TIGR02860 95 GQSIGVKLNT-------KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKN--MDDLANLINKAG 159 (402)
T ss_pred CEEEEEEEec-------CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCC
Confidence 5677887752 24555332 2 258999999 99999999999999965 588888887753
No 100
>KOG4407|consensus
Probab=96.31 E-value=0.0056 Score=69.31 Aligned_cols=131 Identities=16% Similarity=0.208 Sum_probs=99.0
Q ss_pred ceeEEEEccCCcceeEEEEe---------------cC--CcC------CCCcEEEEEecCCChhhhcCCCCCCCEEEEEC
Q psy3479 63 SDEVVVPKAKGEILGVVIVE---------------SG--WGS------MLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 119 (518)
Q Consensus 63 s~~v~l~k~~~~~lG~~l~~---------------~~--~~~------~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VN 119 (518)
...+++.|.++.+|||+|.- .| .|+ ..-.+++..+..++|+..+| ++.||+|..||
T Consensus 46 ~~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~it 124 (1973)
T KOG4407|consen 46 PKLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAGIT 124 (1973)
T ss_pred CceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceeeec
Confidence 33588899999999999864 01 011 11256788999999999999 99999999999
Q ss_pred CEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCceeEEEeeCCCCccccceEecCCCCCCCCCCCCCcccccccccceeE
Q psy3479 120 GVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIKRPDTKYQLGFSVQNGVAPEGETQPSTEVDLFISTEKIMV 199 (518)
Q Consensus 120 g~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~~~~~~rp~~~~~~g~~v~~~~~~~~~~~P~~~~~~~~s~~~~gi 199 (518)
|....+.+ ......+|... -+
T Consensus 125 G~e~~~~T-S~~~~~vk~~e----------------------------------------------------------T~ 145 (1973)
T KOG4407|consen 125 GLEPTSPT-SLPPYQVKAME----------------------------------------------------------TI 145 (1973)
T ss_pred ccccCCCc-cccHHHHhhhh----------------------------------------------------------hh
Confidence 99888877 55555555444 13
Q ss_pred eeecccCCCCCCCCCCccceeeeceEEEEcccchhhhhHHHHHHHhhcccccccEEEE
Q psy3479 200 LNTDLKAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVL 257 (518)
Q Consensus 200 ~v~~i~~p~g~a~~~~~g~L~~gD~il~Vng~~~~~~~~~eav~~lk~~~~~~~lvv~ 257 (518)
|+..|. +.|++.-. .||.||+.+.||+..+....-.+++..++.......+++.
T Consensus 146 ~~~eV~-~n~~~~~a---~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~ 199 (1973)
T KOG4407|consen 146 FIKEVQ-ANGPAHYA---NLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVV 199 (1973)
T ss_pred hhhhhc-cCChhHHH---hhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceec
Confidence 555566 77776665 6999999999999999999999999999887665555543
No 101
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.20 E-value=0.0034 Score=65.52 Aligned_cols=41 Identities=37% Similarity=0.561 Sum_probs=34.3
Q ss_pred cccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCE
Q psy3479 451 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 497 (518)
Q Consensus 451 ~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~ 497 (518)
.||+.+. .......|..|.++|||.+|| |.+||.|++|||.
T Consensus 452 ~LGl~v~-----~~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 452 YLGLKVK-----SEGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred ccceEec-----ccCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 5666654 223457899999999999999 9999999999999
No 102
>KOG3532|consensus
Probab=95.96 E-value=0.02 Score=61.13 Aligned_cols=81 Identities=14% Similarity=0.238 Sum_probs=64.2
Q ss_pred cccceeEEEEccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Q psy3479 60 VFESDEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSK 139 (518)
Q Consensus 60 vf~s~~v~l~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~ 139 (518)
|..+-|+.+.+.....+|+.....+ ...+-|..|.|++||.++. |.+||.+++|||+++. +..++...++...
T Consensus 372 v~~ilD~f~~~~~s~~ig~vf~~~~----~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~ 444 (1051)
T KOG3532|consen 372 VVNVLDTFSRYDVSSPIGLVFDKNT----NRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTT 444 (1051)
T ss_pred hhhhhhhhccccccCceeEEEecCC----ceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcc
Confidence 3333367778888888999997544 4567799999999999999 9999999999999987 5678888999887
Q ss_pred CCcEEEEEEE
Q psy3479 140 NQTVVKLTVV 149 (518)
Q Consensus 140 ~~~~v~l~v~ 149 (518)
. .|...+.
T Consensus 445 ~--~~~~l~~ 452 (1051)
T KOG3532|consen 445 G--DLTVLVE 452 (1051)
T ss_pred c--ceEEEEe
Confidence 3 4444443
No 103
>KOG1421|consensus
Probab=95.85 E-value=0.064 Score=57.59 Aligned_cols=130 Identities=21% Similarity=0.241 Sum_probs=81.5
Q ss_pred EEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHH-hcCcCCeeEEEeeeecccceeccCCC----C--
Q psy3479 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKI-LMKTMPTSMFRLLTGQETPVVVPKAK----G-- 449 (518)
Q Consensus 377 ~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~-~~~~v~~~v~r~~~~~~~~~~~~~~~----~-- 449 (518)
.+|..|.++|+|++ .|++||.+++||++-+. +...+.+.|-. .+..+.+.+.|-...-+......... .
T Consensus 305 LvV~~vL~~gpa~k--~Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~Rggqelel~vtvqdlh~itp~R~ 380 (955)
T KOG1421|consen 305 LVVETVLPEGPAEK--KLEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQRGGQELELTVTVQDLHGITPDRF 380 (955)
T ss_pred EEEEEeccCCchhh--ccCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEEeCCEEEEEEEEeccccCCCCceE
Confidence 67899999999987 49999999999988776 44555555544 34444555544211111111111110 0
Q ss_pred -ccccEEEEecC------CCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhcC
Q psy3479 450 -EILGVVIVESG------WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 515 (518)
Q Consensus 450 -~~lG~~i~~~g------~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~~ 515 (518)
+--|-.+.... ...+..|+||++-. |+++.+.+ +. |-.|.+||+.++-++ ..+++++|.-.
T Consensus 381 levcGav~hdlsyq~ar~y~lP~~GvyVa~~~-gsf~~~~~-~y-~~ii~~vanK~tPdL--daFidvlk~L~ 448 (955)
T KOG1421|consen 381 LEVCGAVFHDLSYQLARLYALPVEGVYVASPG-GSFRHRGP-RY-GQIIDSVANKPTPDL--DAFIDVLKELP 448 (955)
T ss_pred EEEcceEecCCCHHHHhhcccccCcEEEccCC-CCccccCC-cc-eEEEEeecCCcCCCH--HHHHHHHHhcc
Confidence 11122221100 01233489999887 89999988 55 999999999999665 88888887644
No 104
>PF12812 PDZ_1: PDZ-like domain
Probab=95.78 E-value=0.039 Score=43.46 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=37.1
Q ss_pred EEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhcCC
Q psy3479 469 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 516 (518)
Q Consensus 469 ~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~~~ 516 (518)
++.....|+++...| +..|-.|.+|||+++.++ +++++.+|+-.|
T Consensus 33 v~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ipd 77 (78)
T PF12812_consen 33 VYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPDL--DDFIKVVKKIPD 77 (78)
T ss_pred EEEEecCCChhhhCC-CCCCeEEEeECCcCCcCH--HHHHHHHHhCCC
Confidence 444567788888877 999999999999999765 999998887654
No 105
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=95.68 E-value=0.0053 Score=53.76 Aligned_cols=48 Identities=31% Similarity=0.414 Sum_probs=35.7
Q ss_pred cccchhhhhhhhccccccceeeecC---cEEEEEEeecCCCCCCCCCCCCCCCCccccccccce
Q psy3479 4 FNDRVHKEIMMDHALRTISYIADIG---DLVVLMARRRFVSQEADEPPKISRTPKMICHVFESD 64 (518)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~vf~s~ 64 (518)
.-|.-|++.+|+|||+.|||+++-. ++.-++||... ..++.||||.++
T Consensus 58 i~d~~t~~~l~~~~i~~ISfc~~d~~~~~~FafIa~~~~-------------~~~~~ChvF~~~ 108 (132)
T cd01267 58 IIDPKTKTVLHGHPLYNISCCAQDKEDLRFFAFIAKDTE-------------TNKHYCHVFCSE 108 (132)
T ss_pred EEeCCCCcEEEEcccceEEEEecCCCCCeEEEEEEecCC-------------CCceEEEEEECC
Confidence 3466789999999999999999543 35556665432 257999999865
No 106
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.11 Score=53.36 Aligned_cols=68 Identities=25% Similarity=0.381 Sum_probs=53.5
Q ss_pred CCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCceeEEEe
Q psy3479 89 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKI 159 (518)
Q Consensus 89 ~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~~~~~ 159 (518)
..|++|..+.++|||+++| ++.||.|+++||..+.+. .+-+..+.....+..+.+.+.|.....++.+
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~--~~l~~~v~~~~~g~~v~~~~~r~g~~~~~~v 336 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASL--SDLVAAVASNRPGDEVALKLLRGGKERELAV 336 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCH--HHHHHHHhccCCCCEEEEEEEECCEEEEEEE
Confidence 3478999999999999999 999999999999998765 4445555555555799999998855544443
No 107
>KOG1421|consensus
Probab=95.62 E-value=0.12 Score=55.67 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=75.4
Q ss_pred cEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCcCCeeEEEeeeecccceeccC--CCC---c
Q psy3479 376 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPTSMFRLLTGQETPVVVPK--AKG---E 450 (518)
Q Consensus 376 g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~v~~~v~r~~~~~~~~~~~~~--~~~---~ 450 (518)
=.+|+.|.+.-.- .|..||.|+++||+.+..++.-. ... ++...++|-....+....... ... -
T Consensus 772 l~~ishv~~~~~k----il~~gdiilsvngk~itr~~dl~--d~~-----eid~~ilrdg~~~~ikipt~p~~et~r~vi 840 (955)
T KOG1421|consen 772 LYVISHVRPLLHK----ILGVGDIILSVNGKMITRLSDLH--DFE-----EIDAVILRDGIEMEIKIPTYPEYETSRAVI 840 (955)
T ss_pred EEEEEeeccCccc----ccccccEEEEecCeEEeeehhhh--hhh-----hhheeeeecCcEEEEEeccccccccceEEE
Confidence 3567777776542 27899999999999887664333 211 233444442211111000000 000 1
Q ss_pred cccEEEEec------CCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhcC
Q psy3479 451 ILGVVIVES------GWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 515 (518)
Q Consensus 451 ~lG~~i~~~------g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~~ 515 (518)
.+|-.|... .......|+|+.+...||||.+ + |++-.-|.+|||+.+. ++++++.+|+.-.
T Consensus 841 ~~gailq~ph~av~~q~edlp~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~--~lddf~~~~~~ip 907 (955)
T KOG1421|consen 841 WMGAILQPPHSAVFEQVEDLPEGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTN--TLDDFYHMLLEIP 907 (955)
T ss_pred EEeccccCchHHHHHHHhccCCceEEeecccCChhHh-h-cchheeEEEecccccC--cHHHHHHHHhhCC
Confidence 223222200 0001114799999999999999 7 9999999999999995 4599999998643
No 108
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=95.49 E-value=0.0062 Score=52.82 Aligned_cols=47 Identities=23% Similarity=0.479 Sum_probs=35.5
Q ss_pred ccccchhhhhhhhccccccceee-ecCc--EEEEEEeecCCCCCCCCCCCCCCCCccccccccc
Q psy3479 3 TFNDRVHKEIMMDHALRTISYIA-DIGD--LVVLMARRRFVSQEADEPPKISRTPKMICHVFES 63 (518)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~vf~s 63 (518)
.+-|.-|++.||+|+|+.|||++ |..| .+-+++|-. . ..+.||||..
T Consensus 53 ~v~d~~tk~~i~~~~i~~ISf~~~D~~d~~~FayIakd~-------------~-~~~~CHvF~~ 102 (127)
T cd01274 53 KFIDETFKTLIDGHGIYNIRCVCQDREDLNFFAYITKDT-------------E-NRHYCHVFCV 102 (127)
T ss_pred EEEECCCCeEEEEeeeeEEEEEecCCCCceEEEEEeeCC-------------C-CCEEEEEEEc
Confidence 34567789999999999999998 5543 677776521 1 4899999974
No 109
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.032 Score=57.27 Aligned_cols=46 Identities=33% Similarity=0.500 Sum_probs=39.3
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhc
Q psy3479 466 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 514 (518)
Q Consensus 466 ~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~ 514 (518)
.|++|..|.++|||+++| +++||.|+++||.++.+. .+..+.+...
T Consensus 270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~--~~l~~~v~~~ 315 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASL--SDLVAAVASN 315 (347)
T ss_pred CceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCH--HHHHHHHhcc
Confidence 368999999999999999 999999999999999654 6666666543
No 110
>KOG1738|consensus
Probab=94.22 E-value=0.058 Score=57.55 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=54.5
Q ss_pred CCCccccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhc
Q psy3479 447 AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 514 (518)
Q Consensus 447 ~~~~~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~ 514 (518)
++..++|+.|.. ......+|..+.+++||+....|..||.|+.||++.+-++.+.-+|.-|+..
T Consensus 210 kp~eglg~~I~S----sydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~ 273 (638)
T KOG1738|consen 210 SPSEGLGLYIDS----SYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRET 273 (638)
T ss_pred CcccCCceEEee----ecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccC
Confidence 567899999973 2233468999999999999999999999999999999999998888877654
No 111
>KOG3532|consensus
Probab=93.91 E-value=0.15 Score=54.81 Aligned_cols=74 Identities=12% Similarity=0.230 Sum_probs=58.0
Q ss_pred EEEEeCCCCCceeEEEEeCCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcCcCCe
Q psy3479 350 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMKTMPT 429 (518)
Q Consensus 350 ~V~L~k~~~~~lG~~i~~~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~~v~~ 429 (518)
++.+.+..+..+|+..... ....+-|-.|.++++|.++. +.+||.+++|||+++. +..++...++.....+..
T Consensus 377 D~f~~~~~s~~ig~vf~~~----~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~ 449 (1051)
T KOG3532|consen 377 DTFSRYDVSSPIGLVFDKN----TNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTV 449 (1051)
T ss_pred hhhccccccCceeEEEecC----CceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEE
Confidence 3445555677888887532 12356789999999999999 9999999999999999 788899999887776533
Q ss_pred e
Q psy3479 430 S 430 (518)
Q Consensus 430 ~ 430 (518)
.
T Consensus 450 l 450 (1051)
T KOG3532|consen 450 L 450 (1051)
T ss_pred E
Confidence 3
No 112
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=93.76 E-value=0.48 Score=46.80 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=51.5
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeC
Q psy3479 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPC 151 (518)
Q Consensus 90 ~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~ 151 (518)
-|+++..+..++||. |.|+.||.|.+|||+.+. +.++....+++.+-+..|++...|.
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEec
Confidence 378999999999994 789999999999999886 5688999999888888999999974
No 113
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=93.68 E-value=0.2 Score=40.33 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=30.6
Q ss_pred cEEEEEecCC--------ChhhhcC-CCCCCCEEEEEcCeeccCCChHHHHHHHHH-hcCcCCeeE
Q psy3479 376 TVVIANLAPA--------GAAARCG-QLNIGDQIIAVNGVSLVGLPLSTCQTYIKI-LMKTMPTSM 431 (518)
Q Consensus 376 g~~I~~V~~~--------s~A~~~G-~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~-~~~~v~~~v 431 (518)
+..|..|.++ ||..+.| .+++||.|++|||+++.. ......+|.. ++..+.+.+
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~--~~~~~~lL~~~agk~V~Ltv 76 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTA--DANPYRLLEGKAGKQVLLTV 76 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BT--TB-HHHHHHTTTTSEEEEEE
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCC--CCCHHHHhcccCCCEEEEEE
Confidence 4567888776 5655665 356999999999999983 3445556654 444444443
No 114
>KOG1320|consensus
Probab=93.60 E-value=0.26 Score=51.84 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=54.0
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCceeEEEee
Q psy3479 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAPVVEVKIK 160 (518)
Q Consensus 90 ~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~~~~~~~~ 160 (518)
.+++|..|.|+++|..-+ +..||+|++|||..+.++. +...+|+.|.....|.+...+.....+..+.
T Consensus 398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~--~l~~~i~~~~~~~~v~vl~~~~~e~~tl~Il 465 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLK--HLYELIEECSTEDKVAVLDRRSAEDATLEIL 465 (473)
T ss_pred eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeechH--HHHHHHHhcCcCceEEEEEecCccceeEEec
Confidence 368899999999999877 9999999999999999875 4678888888544677766666555555443
No 115
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=93.08 E-value=0.36 Score=45.65 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=50.8
Q ss_pred EccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEE
Q psy3479 69 PKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTV 148 (518)
Q Consensus 69 ~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v 148 (518)
.+..+..+|+.+..+. +++.=+++| ||.||..+++|+.+++. -+++-++|+...+.....|+|
T Consensus 200 v~r~eki~Gyr~~pgk--------------d~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~~m~s~qlTv 262 (275)
T COG3031 200 VIRNEKIEGYRFEPGK--------------DGSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLRNMPSLQLTV 262 (275)
T ss_pred EeeCCceEEEEecCCC--------------Ccchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhhcCcceEEEE
Confidence 3344455777765433 334557888 99999999999998864 466777888888777899999
Q ss_pred EeCCcee
Q psy3479 149 VPCAPVV 155 (518)
Q Consensus 149 ~~~~~~~ 155 (518)
.|.....
T Consensus 263 ~R~G~rh 269 (275)
T COG3031 263 IRRGKRH 269 (275)
T ss_pred EecCccc
Confidence 8875443
No 116
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=91.87 E-value=0.23 Score=48.76 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=27.8
Q ss_pred EECCCChh---hhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhh
Q psy3479 472 NLAPAGAA---ARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512 (518)
Q Consensus 472 ~V~~gs~A---~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk 512 (518)
.|.||..+ .++| ||+||++++|||.++.+. +++.++++
T Consensus 210 rl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~D~--~qa~~l~~ 250 (276)
T PRK09681 210 AVKPGADRSLFDASG-FKEGDIAIALNQQDFTDP--RAMIALMR 250 (276)
T ss_pred EECCCCcHHHHHHcC-CCCCCEEEEeCCeeCCCH--HHHHHHHH
Confidence 45566544 4579 999999999999999876 54444444
No 117
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 contains an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domains of both SHC and IRS-1, for example, bind to a NPXpY sequence. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=91.26 E-value=0.12 Score=45.18 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=36.3
Q ss_pred ccccchhhhhhhhccccccceeeec---CcEEEEEEeecCCCCCCCCCCCCCCCCccccccccce
Q psy3479 3 TFNDRVHKEIMMDHALRTISYIADI---GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESD 64 (518)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~vf~s~ 64 (518)
++-+|.|++.+|+|||+-|||.++- -+++-.|||.- ......||||.+.
T Consensus 67 ~~~~~~tk~li~~~~i~rISf~a~D~~~~k~FayIakd~-------------~~~~~~ChvF~~~ 118 (140)
T cd01270 67 NWTWDESKILVMNHPIYRIFYVSHDSQDLKIFSYIARDG-------------ASNTFKCNVFKSH 118 (140)
T ss_pred cccccCcccEEEecCeeEEEEeecCCCCCcEEEEEecCC-------------CCCceEEEEEEEc
Confidence 4556778999999999999999854 34555666541 1347899999865
No 118
>KOG3834|consensus
Probab=91.15 E-value=1.1 Score=46.03 Aligned_cols=118 Identities=20% Similarity=0.211 Sum_probs=80.8
Q ss_pred CCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEeCCc--eeEEEeeCCCCcc
Q psy3479 89 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVPCAP--VVEVKIKRPDTKY 166 (518)
Q Consensus 89 ~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~~~~--~~~~~~~rp~~~~ 166 (518)
..|+-|-.|.++++|+++|-.-=-|-|++|||.-|.. ..+....+||..-. .|+|+|....- +..+.|. |....
T Consensus 14 teg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~se--kVkltv~n~kt~~~R~v~I~-ps~~w 89 (462)
T KOG3834|consen 14 TEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSE--KVKLTVYNSKTQEVRIVEIV-PSNNW 89 (462)
T ss_pred ceeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhccc--ceEEEEEecccceeEEEEec-ccccc
Confidence 4466688999999999999778889999999998764 44666667777664 59999987653 3344555 35544
Q ss_pred c---cceEecCCCCCCCCCCCCCcccccccccceeEeeecccCCCCCCCCCCcccee-eeceEEEE
Q psy3479 167 Q---LGFSVQNGVAPEGETQPSTEVDLFISTEKIMVLNTDLKAPEGETQPSTEVDLF-ISTEKIMV 228 (518)
Q Consensus 167 ~---~g~~v~~~~~~~~~~~P~~~~~~~~s~~~~gi~v~~i~~p~g~a~~~~~g~L~-~gD~il~V 228 (518)
+ ||.+|+-... ++... ..-.|-++. |.++|+.. .|. .+|.|+-+
T Consensus 90 ggqllGvsvrFcsf------~~A~~--------~vwHvl~V~-p~SPaalA---gl~~~~DYivG~ 137 (462)
T KOG3834|consen 90 GGQLLGVSVRFCSF------DGAVE--------SVWHVLSVE-PNSPAALA---GLRPYTDYIVGI 137 (462)
T ss_pred cccccceEEEeccC------ccchh--------heeeeeecC-CCCHHHhc---ccccccceEecc
Confidence 5 7888863222 11000 223566676 88888887 454 67888876
No 119
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=90.43 E-value=0.44 Score=47.09 Aligned_cols=44 Identities=25% Similarity=0.416 Sum_probs=38.1
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhhhc
Q psy3479 467 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN 514 (518)
Q Consensus 467 ~i~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~ 514 (518)
|+|+..|..+++|. |.|++||.|++|||+++.+ .+|+++.+++.
T Consensus 131 gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~ 174 (342)
T COG3480 131 GVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTS--SDELIDYVSSK 174 (342)
T ss_pred eEEEEEccCCcchh--ceeccCCeEEeeCCeecCC--HHHHHHHHhcc
Confidence 78999999999887 4599999999999999954 59999988763
No 120
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=89.41 E-value=0.2 Score=43.92 Aligned_cols=49 Identities=31% Similarity=0.605 Sum_probs=34.1
Q ss_pred cccchhhhhhhhccccccceeee--c--CcEEEEEEeecCCCCCCCCCCCCCCCCcccccccccee
Q psy3479 4 FNDRVHKEIMMDHALRTISYIAD--I--GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE 65 (518)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~vf~s~~ 65 (518)
.-|.-|.+.+|.|||+.|||++- . -+.+-++++. .+..++.||||...+
T Consensus 65 v~~~~t~~~l~~~~i~~Is~~~~~d~~~~~~Fafi~~~-------------~~~~~~~CHVF~~~~ 117 (140)
T PF00640_consen 65 VIDPDTGEVLMSHPIRRISFCAVGDPDDKRVFAFIARD-------------PRSSRFYCHVFKCED 117 (140)
T ss_dssp EEETTTTCEEEEEEGGGEEEEEESSTTETTEEEEEEEE-------------TSSSCEEEEEEEESS
T ss_pred EecCccccccccCCccceEEEEecCCCcceEEEEEecc-------------CCCCccccEeeeHhh
Confidence 44666889999999999999987 2 2244443433 233479999998553
No 121
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=87.18 E-value=0.31 Score=42.75 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=35.6
Q ss_pred ccccchhhhhhhhccccccceeeec---CcEEEEEEeecCCCCCCCCCCCCCCCCccccccccce
Q psy3479 3 TFNDRVHKEIMMDHALRTISYIADI---GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESD 64 (518)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~vf~s~ 64 (518)
.+-|.-|++.+++|+|+.|||+|+= .+.+-.+||. ....++.||+|.+.
T Consensus 62 ~vvd~~Tk~~i~~~~i~~ISfca~D~~d~r~FayIakd-------------~~~~r~~CHvF~~~ 113 (138)
T cd01268 62 RVVDEKTKGLIVDQTIEKVSFCAPDRNFDRGFSYICRD-------------GTTRRWMCHGFLAV 113 (138)
T ss_pred EEEecCCCcEEEEEeEEEEEEEecCCCCCcEEEEEecC-------------CCcccEEEEEEEee
Confidence 3457789999999999999999953 4455555542 23347899999753
No 122
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=87.01 E-value=0.34 Score=42.11 Aligned_cols=49 Identities=31% Similarity=0.462 Sum_probs=36.7
Q ss_pred ccccchhhhhhhhccccccceeeec---CcEEEEEEeecCCCCCCCCCCCCCCCCccccccccce
Q psy3479 3 TFNDRVHKEIMMDHALRTISYIADI---GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESD 64 (518)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~vf~s~ 64 (518)
..-|.-+++.++.|||+.|||++.- .+++.+++|.... ..+.||||..+
T Consensus 56 ~v~~~~~~~~l~~~~l~~Isf~~~~~~~~~~F~fI~~~~~~-------------~~~~CHvF~c~ 107 (134)
T smart00462 56 KLIDEDTKAVLHEHPLRRISFCAVGPDDLDVFGYIARDPGS-------------SRFACHVFRCE 107 (134)
T ss_pred EEEECCCCeEEEEccccceEEEecCCCCCcEEEEEeeCCCC-------------CeEEEEEEEcC
Confidence 3456667789999999999998854 6677888765321 26999999754
No 123
>PF12812 PDZ_1: PDZ-like domain
Probab=84.77 E-value=2.6 Score=33.10 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=36.1
Q ss_pred EEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcC
Q psy3479 377 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMK 425 (518)
Q Consensus 377 ~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~ 425 (518)
.++.....++++...| +..|-.|.+|||+++. +.++.+..+++.++
T Consensus 32 gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTP--DLDDFIKVVKKIPD 77 (78)
T ss_pred EEEEEecCCChhhhCC-CCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence 3444567788887777 9999999999999999 56777788776543
No 124
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=81.00 E-value=0.58 Score=40.33 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=34.7
Q ss_pred cccccchhhhhhhhccccccceeeec-C-cEEEEEEeecCCCCCCCCCCCCCCCCccccccccce
Q psy3479 2 LTFNDRVHKEIMMDHALRTISYIADI-G-DLVVLMARRRFVSQEADEPPKISRTPKMICHVFESD 64 (518)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~vf~s~ 64 (518)
|++.|.-|++.+.+++|+.|||.++= . ...-+++|.. + ....||||.++
T Consensus 51 l~l~d~~t~~~l~~~~i~~Isf~~~gk~~r~FafI~~~~-------------~-~~~~CHVF~c~ 101 (123)
T cd01216 51 LSLIDPDNLTVLHECRVRYLSFWGVGRDVRDFAFIMRTE-------------R-RRFMCHVFRCE 101 (123)
T ss_pred EEEEcCCCCeEEEEEEeeEEEEEEcCCCCcEEEEEEEcC-------------C-CeEEEEEEEcC
Confidence 56678889999999999999999962 1 2222333221 1 57999999864
No 125
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=80.22 E-value=1 Score=38.29 Aligned_cols=48 Identities=29% Similarity=0.506 Sum_probs=34.8
Q ss_pred cccchhhhhhhhccccccceeeec---CcEEEEEEeecCCCCCCCCCCCCCCCCccccccccce
Q psy3479 4 FNDRVHKEIMMDHALRTISYIADI---GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESD 64 (518)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~vf~s~ 64 (518)
.-|.-+++.++.|||+.|||++-- .++..+++|.... ..+.||||...
T Consensus 55 l~d~~~~~~l~~~~l~~Is~~~~~~~~~~~F~~i~~~~~~-------------~~~~CHvF~c~ 105 (123)
T cd00934 55 LIDPKTKEVLASHPIRRISFCAADPDDLRIFAFIAREPGS-------------SRFECHVFKCE 105 (123)
T ss_pred EEeCCCCcEEEeeccceEEEEECCCCCCcEEEEEEEcCCC-------------CcEEEEEEEeC
Confidence 344556789999999999998733 5677777665322 47899999744
No 126
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=77.30 E-value=3.9 Score=42.30 Aligned_cols=41 Identities=34% Similarity=0.575 Sum_probs=34.2
Q ss_pred EEEEECCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHhh
Q psy3479 469 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 512 (518)
Q Consensus 469 ~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~s~~e~v~~lk 512 (518)
++..+..+++|+.+| |++||+|+++|+..+..+ +++...+.
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~--~~~~~~~~ 172 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASW--DDVRRLLV 172 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCH--HHHHHHHH
Confidence 566899999999999 999999999999999665 55554443
No 127
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain. SHC phosphotyrosine-binding (PTB) domain. SHC is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. SHC contains an PTB domain followed by an SH2 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=73.30 E-value=3.4 Score=37.00 Aligned_cols=77 Identities=29% Similarity=0.581 Sum_probs=55.5
Q ss_pred cceeeeceEEEEcccchhhhhHHHHHHHhhccc----ccccEEEEEeecccCCCCCCCCCCCCCCCccccccccCch--h
Q psy3479 217 VDLFISTEKIMVLNTDLKEIMMDHALRTISYIA----DIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE--A 290 (518)
Q Consensus 217 g~L~~gD~il~Vng~~~~~~~~~eav~~lk~~~----~~~~lvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 290 (518)
..|.+.-+-+.+-..+.....+++.+..+..+. +..+.+...++++ .....||+|+..+ +
T Consensus 77 V~l~IS~~~v~~~~~~t~~ii~~H~l~~ISfaa~gd~d~~~~~ayIAKd~--------------~~~r~ChVf~~~~~lA 142 (160)
T cd01209 77 ITINVSSSSLNLMAQDCKQIIANHHMQSISFASGGDPDTAEYVAYIAKNP--------------DNQRACHVLECPEGLA 142 (160)
T ss_pred EEEEEEeeEEEEeccCchhHHhcCCCcceEEEeCCCCCcceeEEEEEcCC--------------CCCceeEEEEcCCchH
Confidence 456666667777777778888888888888876 3334444444432 1345799998877 8
Q ss_pred hhHhhhccchhhhhhHH
Q psy3479 291 QFIAQSIGQAFQVAYME 307 (518)
Q Consensus 291 ~~~~~s~~~~~~~~~~~ 307 (518)
+.+..++||+|.++|++
T Consensus 143 q~Ii~TIGQAF~lay~~ 159 (160)
T cd01209 143 QDLISTIGQAFELRFKQ 159 (160)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88999999999999854
No 128
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=70.53 E-value=12 Score=35.65 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=37.4
Q ss_pred CCCceeEEEEeCCCCCcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhcC
Q psy3479 357 KGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILMK 425 (518)
Q Consensus 357 ~~~~lG~~i~~~~~g~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~~ 425 (518)
.++-+|+.+.. ..+++.-+..| |+.||..+++|+.++. +-+++.+++.....
T Consensus 203 ~eki~Gyr~~p--------------gkd~slF~~sg-lq~GDIavaiNnldlt--dp~~m~~llq~l~~ 254 (275)
T COG3031 203 NEKIEGYRFEP--------------GKDGSLFYKSG-LQRGDIAVAINNLDLT--DPEDMFRLLQMLRN 254 (275)
T ss_pred CCceEEEEecC--------------CCCcchhhhhc-CCCcceEEEecCcccC--CHHHHHHHHHhhhc
Confidence 45567777643 24557788889 9999999999999987 45556666655433
No 129
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=67.94 E-value=8.5 Score=35.42 Aligned_cols=38 Identities=21% Similarity=0.425 Sum_probs=32.1
Q ss_pred ceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEE
Q psy3479 75 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 118 (518)
Q Consensus 75 ~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~V 118 (518)
..|+++...+. .+.|..+..||||+++| +.-|++|.+|
T Consensus 112 ~~GL~l~~e~~-----~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 112 AAGLTLMEEGG-----KVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred hCCCEEEeeCC-----EEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 47899886442 58999999999999999 9999988875
No 130
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=67.03 E-value=4.1 Score=36.29 Aligned_cols=48 Identities=23% Similarity=0.381 Sum_probs=31.1
Q ss_pred cccchhhh----hhhh--ccccccceeeec---CcEEEEEEeecCCCCCCCCCCCCCCCCccccccccce
Q psy3479 4 FNDRVHKE----IMMD--HALRTISYIADI---GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESD 64 (518)
Q Consensus 4 ~~~~~~~~----~~~~--~~~~~~~~~~~~---~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~vf~s~ 64 (518)
+-|.-|++ ++++ ++|+.|||.|+- -.+.-+++|.. ...++.||||.|.
T Consensus 58 l~D~~t~~~~~~~~~~~f~~l~nISFCa~d~~~~r~F~FIak~~-------------~~~~~~CHVF~s~ 114 (148)
T cd01212 58 MVDRSGPNKDKKPCIDFFYSLKNISFCGFHPRDHRYFGFITKHP-------------LLQRFACHVFKSS 114 (148)
T ss_pred EEecCCCcccccchhhccccccceEEEEEcCCCCcEEEEEeccC-------------CCCceEEEEEEeC
Confidence 44555664 4565 579999999965 23455555431 1247999999864
No 131
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=66.50 E-value=13 Score=38.32 Aligned_cols=57 Identities=26% Similarity=0.362 Sum_probs=39.5
Q ss_pred EEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCcEEEEEEEe
Q psy3479 93 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKNQTVVKLTVVP 150 (518)
Q Consensus 93 ~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~~~~v~l~v~~ 150 (518)
++.++..+++|+.+| +++||+|+++|+..+.....-.-............+.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCHHHHHHHHHhccCCcccceEEEEEe
Confidence 455899999999999 999999999999999876543333333222210025666666
No 132
>KOG2921|consensus
Probab=66.08 E-value=8.5 Score=39.32 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=35.3
Q ss_pred CcEEEEEECCCChhhhc-CCCCCCCEEEEECCEeCCCCCHHHHHHHhhh
Q psy3479 466 PTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV 513 (518)
Q Consensus 466 ~~i~I~~V~~gs~A~~a-G~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~ 513 (518)
.++.|.+|...||+--- | |.+||+|.++||-+|+.. ++..+.|+.
T Consensus 220 ~gV~Vtev~~~Spl~gprG-L~vgdvitsldgcpV~~v--~dW~ecl~t 265 (484)
T KOG2921|consen 220 EGVTVTEVPSVSPLFGPRG-LSVGDVITSLDGCPVHKV--SDWLECLAT 265 (484)
T ss_pred ceEEEEeccccCCCcCccc-CCccceEEecCCcccCCH--HHHHHHHHh
Confidence 35788888888887654 6 999999999999999765 666665554
No 133
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=65.04 E-value=10 Score=34.88 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=30.1
Q ss_pred cccEEEEecCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEE
Q psy3479 451 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 494 (518)
Q Consensus 451 ~lG~~i~~~g~~~~~~~i~I~~V~~gs~A~~aG~L~~GD~Il~V 494 (518)
..|+.+... ...+.|..|..||+|+++| +.-|+.|++|
T Consensus 112 ~~GL~l~~e-----~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 112 AAGLTLMEE-----GGKVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred hCCCEEEee-----CCEEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 346665521 2357999999999999999 9999999987
No 134
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=59.00 E-value=2.9 Score=36.66 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.8
Q ss_pred ccccchhhhhhhhccccccceeee
Q psy3479 3 TFNDRVHKEIMMDHALRTISYIAD 26 (518)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (518)
.+-|.-|.+.|++||+.-|||+|+
T Consensus 65 ~v~D~~T~~ll~~~~i~rISfca~ 88 (139)
T cd01215 65 KVLDEKTGAVLHHHPVHRISFIAR 88 (139)
T ss_pred EEEcCCCCcEEEeeceeeEEEEec
Confidence 345778999999999999999993
No 135
>KOG0792|consensus
Probab=58.26 E-value=4.6 Score=46.21 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=56.7
Q ss_pred EEEEccCCcceeEEEEecCCcC---CCCcEEEEEec-------------CCChhhh-cCCCCCCCEEEEECCEEcCCCCH
Q psy3479 66 VVVPKAKGEILGVVIVESGWGS---MLPTVVIANLA-------------PAGAAAR-CGQLNIGDQIIAVNGVSLVGLPL 128 (518)
Q Consensus 66 v~l~k~~~~~lG~~l~~~~~~~---~~~~~~V~~v~-------------~gg~A~~-~G~L~~GD~Il~VNg~~l~~~~~ 128 (518)
+.|..++.+.+||.+.++..-. ......++.+. |+++|+. .-++..||+++.|||.+.....|
T Consensus 708 ~~~~~~~~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~ 787 (1144)
T KOG0792|consen 708 SYLAEDPPGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEH 787 (1144)
T ss_pred cccccCCCccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccc
Confidence 3344444678999998644311 01345677777 8888854 45799999999999999999999
Q ss_pred HHHHHHHhcCCC
Q psy3479 129 STCQTYIKNSKN 140 (518)
Q Consensus 129 ~~~~~~l~~~~~ 140 (518)
+..+.+|+++..
T Consensus 788 ~~~vs~irs~r~ 799 (1144)
T KOG0792|consen 788 DQVVSLIRSPRE 799 (1144)
T ss_pred cchHHHHhhhhh
Confidence 999999998874
No 136
>KOG1945|consensus
Probab=52.33 E-value=6 Score=39.79 Aligned_cols=83 Identities=29% Similarity=0.360 Sum_probs=67.5
Q ss_pred eEEEEccCCcceeEEEEecC----CcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCC
Q psy3479 65 EVVVPKAKGEILGVVIVESG----WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKN 140 (518)
Q Consensus 65 ~v~l~k~~~~~lG~~l~~~~----~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~ 140 (518)
++.+.+..- ++|+.+++.+ ||-..-++|+....+|+.-+|+|+..+=|.+.++.+..+.+++..-+++.++.+-+
T Consensus 102 e~av~~~~~-g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S~~ 180 (377)
T KOG1945|consen 102 EVAVEKGAE-GLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGSSS 180 (377)
T ss_pred hhhccCCcC-CCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhcccccchh
Confidence 366665443 4888777633 44456689999999999999999999999999999999999999999999999885
Q ss_pred CcEEEEEEEe
Q psy3479 141 QTVVKLTVVP 150 (518)
Q Consensus 141 ~~~v~l~v~~ 150 (518)
.+.++..+
T Consensus 181 --~~n~~s~~ 188 (377)
T KOG1945|consen 181 --RVNFTSPT 188 (377)
T ss_pred --ccCCcccc
Confidence 66665544
No 137
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=36.03 E-value=93 Score=26.11 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=29.7
Q ss_pred eEEE-EccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEE
Q psy3479 65 EVVV-PKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 118 (518)
Q Consensus 65 ~v~l-~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~V 118 (518)
.|.+ ....|+.|-=-+..+..|| |+ |--+|+|+| ..++||+|+=.
T Consensus 42 ~V~I~Nv~NG~Rf~TYvI~g~~gS---g~----I~lNGAAAr--~~~~GD~vII~ 87 (111)
T cd06919 42 KVLVVNVNNGARFETYVIPGERGS---GV----ICLNGAAAR--LGQPGDRVIIM 87 (111)
T ss_pred EEEEEECCCCcEEEEEEEEcCCCC---CE----EEeCCHHHh--cCCCCCEEEEE
Confidence 5665 4456677776676666543 32 334688888 56999999844
No 138
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=32.97 E-value=1.1e+02 Score=26.36 Aligned_cols=45 Identities=29% Similarity=0.468 Sum_probs=29.8
Q ss_pred eEEE-EccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEE
Q psy3479 65 EVVV-PKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 118 (518)
Q Consensus 65 ~v~l-~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~V 118 (518)
.|.+ ....|+.|-=-+..+..|| |+ |--+|+|+| ..++||+|+=.
T Consensus 43 ~V~V~Nv~NG~Rf~TYvI~g~~GS---g~----I~lNGAAAr--~~~~GD~vII~ 88 (126)
T PRK05449 43 KVQIVNVNNGARFETYVIAGERGS---GV----ICLNGAAAR--LVQVGDLVIIA 88 (126)
T ss_pred EEEEEECCCCcEEEEEEEEcCCCC---CE----EEeCCHHHh--cCCCCCEEEEE
Confidence 5665 4456677776676666543 32 334688888 56999999854
No 139
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=31.68 E-value=1.1e+02 Score=26.10 Aligned_cols=56 Identities=23% Similarity=0.392 Sum_probs=34.4
Q ss_pred eeEEE-EccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHH
Q psy3479 64 DEVVV-PKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 131 (518)
Q Consensus 64 ~~v~l-~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~ 131 (518)
|.|.| ....|..|-=-+..+..||+ + |-.+|+|+| ..++||+++=.. -..++-+|+
T Consensus 41 EkV~I~N~nNGaRf~TYvI~g~rGSg---~----I~lNGAAAr--l~~~GD~VII~s---y~~~~e~e~ 97 (126)
T COG0853 41 EKVDIVNVNNGARFSTYVIAGERGSG---V----ICLNGAAAR--LVQVGDLVIIMS---YAQMSEEEA 97 (126)
T ss_pred ceEEEEECCCCcEEEEEEEEccCCCc---E----EEechHHHh--hCCCCCEEEEEE---cccCCHHHH
Confidence 45666 44556677766666666532 2 344688888 469999998543 234444554
No 140
>KOG0792|consensus
Probab=31.64 E-value=26 Score=40.47 Aligned_cols=67 Identities=22% Similarity=0.396 Sum_probs=51.9
Q ss_pred CccccEEEEecCCCC----CCCcEEEEEEC-------------CCChhhhc-CCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy3479 449 GEILGVVIVESGWGS----MLPTVVIANLA-------------PAGAAARC-GQLNIGDQIIAVNGVSLVGLPLSTCQTY 510 (518)
Q Consensus 449 ~~~lG~~i~~~g~~~----~~~~i~I~~V~-------------~gs~A~~a-G~L~~GD~Il~VNg~~v~~~s~~e~v~~ 510 (518)
.+.+||.+. ++.+. ...+..+++|. |+++|+.. -++-.||.++.|||..+....|+.++.+
T Consensus 715 ~g~~g~~~~-g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~ 793 (1144)
T KOG0792|consen 715 PGRFGFNLK-GGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSL 793 (1144)
T ss_pred Ccccccccc-chhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHH
Confidence 356888876 44332 12345677888 99988775 5689999999999999999999999999
Q ss_pred hhhcCC
Q psy3479 511 IKVNHH 516 (518)
Q Consensus 511 lk~~~~ 516 (518)
|++..+
T Consensus 794 irs~r~ 799 (1144)
T KOG0792|consen 794 IRSPRE 799 (1144)
T ss_pred Hhhhhh
Confidence 998653
No 141
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=31.26 E-value=1.2e+02 Score=26.02 Aligned_cols=45 Identities=27% Similarity=0.446 Sum_probs=29.9
Q ss_pred eEEE-EccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEE
Q psy3479 65 EVVV-PKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 118 (518)
Q Consensus 65 ~v~l-~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~V 118 (518)
.|.+ ....|+.|-=-+..+..|| |+ |--+|+|+| ..++||+|+=+
T Consensus 43 ~V~V~Nv~NG~Rf~TYvI~G~~GS---g~----I~lNGAAAr--l~~~GD~VII~ 88 (126)
T TIGR00223 43 KVDIVNVNNGKRFSTYAIAGKRGS---RI----ICVNGAAAR--CVSVGDIVIIA 88 (126)
T ss_pred EEEEEECCCCcEEEEEEEEcCCCC---CE----EEeCCHHHh--cCCCCCEEEEE
Confidence 5665 4456667776677666643 32 334688888 56999999854
No 142
>KOG1945|consensus
Probab=31.13 E-value=30 Score=35.02 Aligned_cols=81 Identities=27% Similarity=0.309 Sum_probs=61.3
Q ss_pred EEEEEeCCCCCceeEEEEeCCCC----CcCCcEEEEEecCCChhhhcCCCCCCCEEEEEcCeeccCCChHHHHHHHHHhc
Q psy3479 349 KEVVVPKAKGEILGVVIVESGWG----SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKILM 424 (518)
Q Consensus 349 ~~V~L~k~~~~~lG~~i~~~~~g----~~~~g~~I~~V~~~s~A~~~G~l~~GD~Il~Vng~~v~~~s~~~~~~~l~~~~ 424 (518)
..+.+.+ +..++|+++.+.+.| ....++++....++..-+++|+..+-|.+.++.+.....++...+....+.+.
T Consensus 101 ~e~av~~-~~~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S~ 179 (377)
T KOG1945|consen 101 FEVAVEK-GAEGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGSS 179 (377)
T ss_pred hhhhccC-CcCCCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhcccccch
Confidence 3455666 456788888763333 33348999999999999999999999999999999988888887777777655
Q ss_pred CcCCee
Q psy3479 425 KTMPTS 430 (518)
Q Consensus 425 ~~v~~~ 430 (518)
..+.+.
T Consensus 180 ~~~n~~ 185 (377)
T KOG1945|consen 180 SRVNFT 185 (377)
T ss_pred hccCCc
Confidence 544443
No 143
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=30.19 E-value=1.1e+02 Score=26.00 Aligned_cols=46 Identities=33% Similarity=0.541 Sum_probs=26.2
Q ss_pred eeEEE-EccCCcceeEEEEecCCcCCCCcEEEEEecCCChhhhcCCCCCCCEEEEE
Q psy3479 64 DEVVV-PKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 118 (518)
Q Consensus 64 ~~v~l-~k~~~~~lG~~l~~~~~~~~~~~~~V~~v~~gg~A~~~G~L~~GD~Il~V 118 (518)
|.|.+ ....|+.|-=-+..+..|| |++ --+|+|+| ..++||+|+=+
T Consensus 42 E~V~V~Nv~nG~Rf~TYvI~g~~GS---g~I----~lNGaAAr--l~~~GD~vII~ 88 (116)
T PF02261_consen 42 EQVQVVNVNNGERFETYVIPGERGS---GVI----CLNGAAAR--LVQVGDRVIIM 88 (116)
T ss_dssp BEEEEEETTT--EEEEEEEEESTTT---T-E----EEEGGGGG--CS-TT-EEEEE
T ss_pred CEEEEEECCCCcEEEEEEEEccCCC---cEE----EECCHHHh--ccCCCCEEEEE
Confidence 35665 4566677776677666643 323 23488888 56999999844
No 144
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=29.75 E-value=20 Score=30.68 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=30.7
Q ss_pred cccccchh-hhhhhhccccccceeeecCc---EEEEEEeecCCCCCCCCCCCCCCCCccccccccce
Q psy3479 2 LTFNDRVH-KEIMMDHALRTISYIADIGD---LVVLMARRRFVSQEADEPPKISRTPKMICHVFESD 64 (518)
Q Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~vf~s~ 64 (518)
++..+.=+ .|.+-+..+|-|||+++ |. +.-+++. ....++.||||..+
T Consensus 51 v~v~~~~~~~~~l~ecrVr~lSF~Gv-gKd~k~fafI~~--------------~~~~~f~ChVF~ce 102 (124)
T cd01271 51 ITVISEKNEEEVLVECRVRYLSFLGI-GKDVHTCAFIMD--------------TGNQRFECHVFWCE 102 (124)
T ss_pred EEEEccCccceeeeeeeEEEeccccC-CCCccEEEEEEe--------------cCCCcEEEEEEEec
Confidence 34444333 57899999999999987 43 2222221 12347999999755
No 145
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=28.50 E-value=20 Score=30.68 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=33.9
Q ss_pred ccccchhhhhhhhccccccceee-ec--CcEEEEEEeecCCCCCCCCCCCCCCCCcccccccc
Q psy3479 3 TFNDRVHKEIMMDHALRTISYIA-DI--GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFE 62 (518)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~vf~ 62 (518)
.+-|.-|...++.|+++-||+.+ |+ =|..-+++|.- ........+|+||+
T Consensus 55 ~lispdtK~vl~~k~f~dISsC~qg~~~~dhFgFIcrEs----------~~~~~~~f~CyVFq 107 (129)
T cd01269 55 NLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRES----------PEPGLSQYICYVFQ 107 (129)
T ss_pred EEEcCCcceEEEecCccccchhhcCCCCcceEEEEeccC----------CCCCcceEEEEEEE
Confidence 34566688899999999999976 34 34455555532 12233468999998
No 146
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=26.41 E-value=1.1e+02 Score=28.22 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=32.5
Q ss_pred cCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCC
Q psy3479 106 CGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKNSKN 140 (518)
Q Consensus 106 ~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~~~~ 140 (518)
.|.+..||+++=|++.-..|-|..++++++++++-
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga 150 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGA 150 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCC
Confidence 46789999999999999999999999999999983
No 147
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=25.50 E-value=71 Score=29.61 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=30.5
Q ss_pred CCCCCCCEEEEECCEeCCCCCHHHHHHHhhhcC
Q psy3479 483 GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH 515 (518)
Q Consensus 483 G~L~~GD~Il~VNg~~v~~~s~~e~v~~lk~~~ 515 (518)
|.+.+||+++-|+++-..+-|..+++++|+++|
T Consensus 117 g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~G 149 (187)
T PRK13810 117 GDLKPEDRIVMLEDVTTSGGSVREAIEVVREAG 149 (187)
T ss_pred ccCCCcCEEEEEEeccCCChHHHHHHHHHHHCC
Confidence 558899999999999999999999999999876
No 148
>KOG2921|consensus
Probab=25.19 E-value=71 Score=32.93 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=34.5
Q ss_pred CcEEEEEecCCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc
Q psy3479 90 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKN 137 (518)
Q Consensus 90 ~~~~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~l~~~~~~~~~~~l~~ 137 (518)
.++.|.+|...+|+----.|.+||.|.++||-.+... ++=.+.|+.
T Consensus 220 ~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v--~dW~ecl~t 265 (484)
T KOG2921|consen 220 EGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV--SDWLECLAT 265 (484)
T ss_pred ceEEEEeccccCCCcCcccCCccceEEecCCcccCCH--HHHHHHHHh
Confidence 3788999999999863334999999999999988754 444444444
No 149
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=20.44 E-value=62 Score=32.29 Aligned_cols=31 Identities=26% Similarity=0.522 Sum_probs=27.6
Q ss_pred EEEEECCCChhhhcCCCCCCCEEEEECCEeCC
Q psy3479 469 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 500 (518)
Q Consensus 469 ~I~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~ 500 (518)
-+-+|.|.++|+++| .-.||-|+-+|+.++.
T Consensus 66 ~~lrv~~~~~~e~~~-~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 66 EVLRVNPESPAEKAG-MVVGDYILGINEDPLR 96 (417)
T ss_pred hheeccccChhHhhc-cccceeEEeecCCcHH
Confidence 466788999999999 9999999999988773
Done!